BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013497
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 195/420 (46%), Positives = 275/420 (65%), Gaps = 13/420 (3%)
Query: 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCS--DSATDPSSKDSALRHGFR 87
L C+K D+ A+ LY+ A ++LS +H+N LLY+CS ++AT+ SS + L GF
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE-SSPNPGLSRGFD 91
Query: 88 VFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF 147
+F QM+ + V+PNEA+ T+ ARLA +K+D + AF ++K+M F + PRLR+Y PALF F
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGF 150
Query: 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207
C +A+KAYEV+ HM + E+ E+AALLKVS +T +KVY+ LQ+LR VR V++
Sbjct: 151 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210
Query: 208 ETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDES 264
T +IE+WF + K D+ +++AV+ KW VKR +DE+
Sbjct: 211 STFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDEN 270
Query: 265 GKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGA 324
G C C ++L C+DI+ ETE FA S+ LA EREVKANF++FQ+WLE++ ++A++DGA
Sbjct: 271 GVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGA 330
Query: 325 NIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNK-WPLVILHNKRLRSLWEN-PSHRNLVE 382
N+GL Q FS QL+ V++ + S +K PLVILH R+ P +R L+E
Sbjct: 331 NMGLVNQR----SFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLE 386
Query: 383 EWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQT 442
+W G LY TP GSNDDWYWLYAAV +CLLVTNDEMRDH+F+LLG++FF +WKE+HQ
Sbjct: 387 KWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQV 446
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 358 bits (920), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 191/419 (45%), Positives = 267/419 (63%), Gaps = 13/419 (3%)
Query: 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCS--DSATDPSSKDSALRHGFR 87
L C+K D+ A+ LY+ A ++LS +H+N LLY+CS ++AT+ SS + L GF
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE-SSPNPGLSRGFD 91
Query: 88 VFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF 147
+F Q + + V+PNEA+ T+ ARLA +K+D + AF +K+ F + PRLR+Y PALF F
Sbjct: 92 IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXK-AFGIQPRLRSYGPALFGF 150
Query: 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207
C +A+KAYEV+ H + E+ E+AALLKVS +T +KVY+ LQ+LR VR V++
Sbjct: 151 CRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRDLVRQVSK 210
Query: 208 ETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDES 264
T IE+WF + K D+ +++AV+ KW VKR DE+
Sbjct: 211 STFDXIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEXDEN 270
Query: 265 GKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGA 324
G C C ++L C+DI+ ETE FA S+ LA EREVKANF++FQ+WLE++ ++A++DGA
Sbjct: 271 GVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGA 330
Query: 325 NIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNK-WPLVILHNKRLRSLWEN-PSHRNLVE 382
N GL Q FS QL+ V++ + S +K PLVILH R+ P +R L+E
Sbjct: 331 NXGLVNQR----SFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLE 386
Query: 383 EWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQ 441
+W G LY TP GSNDDWYWLYAAV +CLLVTNDE RDH+F+LLG++FF +WKE+HQ
Sbjct: 387 KWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEXRDHLFQLLGNSFFPRWKEKHQ 445
>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
Ketone Derivative
pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
Chloromethyl Ketone Derivative
pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
Length = 1071
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 12/153 (7%)
Query: 65 LYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLI 124
LY S + DPS L F V + +IP + T + + + G+Y +
Sbjct: 512 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 571
Query: 125 KRMNNEFNVVPRLRTYDPALFCFCENLEAEK-AYEVEEHMGLMGLSLEQQEIAALLKVSA 183
+ ++ NV DP + LE+ Y V H E LLK
Sbjct: 572 YKRSSPINV-------DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 624
Query: 184 ETGRVEKVYQYLQKLRSTVR----CVNEETGKI 212
+T +V +V L LR + V ++ GKI
Sbjct: 625 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKI 657
>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
Length = 1045
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 12/153 (7%)
Query: 65 LYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLI 124
LY S + DPS L F V + +IP + T + + + G+Y +
Sbjct: 486 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 545
Query: 125 KRMNNEFNVVPRLRTYDPALFCFCENLEAEK-AYEVEEHMGLMGLSLEQQEIAALLKVSA 183
+ ++ NV DP + LE+ Y V H E LLK
Sbjct: 546 YKRSSPINV-------DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 598
Query: 184 ETGRVEKVYQYLQKLRSTVR----CVNEETGKI 212
+T +V +V L LR + V ++ GKI
Sbjct: 599 KTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKI 631
>pdb|4DL0|I Chain I, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4DL0|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase
pdb|4EFA|C Chain C, Crystal Structure Of The Heterotrimeric Egchead Peripheral
Stalk Complex Of The Yeast Vacuolar Atpase - Second
Conformation
Length = 130
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 28 INLQSCTKSK--DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHG 85
+NL + + K DL+ SL++ ++ L+ H +L S L+
Sbjct: 10 MNLAAAERKKTGDLSVR-SLHDIVKPEDFVLNSEHLTTVLVAVPKS----------LKSD 58
Query: 86 FRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFV---LIKRMNNEFNVVPRLRTYDP 142
F + LS NV+P ASV + D +Y L K+ EF R + + P
Sbjct: 59 FEKSYETLSKNVVPASASVIA--------EDAEYVLFNVHLFKKNVQEFTTAAREKKFIP 110
Query: 143 ALFCFCENL 151
F + E L
Sbjct: 111 REFNYSEEL 119
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 254 WVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSE-FQDWLE 312
W+ ++ S DE G C + V +DD R Q REV+ N S+ F +
Sbjct: 64 WIGQQSSRDEQGACA-----VLAVQLDDYLGGRPVQ-------HREVQGNESDLFMSYFP 111
Query: 313 KNANYEAIVDGANIGLYQQNFTEGGFS--VPQLDAVVKKLYERSGNK 357
+ YQ+ E GF VP + VV++LY+ G K
Sbjct: 112 RGLK------------YQEGGVESGFKHVVPN-EVVVQRLYQVKGKK 145
>pdb|1U7L|A Chain A, Crystal Structure Of Subunit C (Vma5p) Of The Yeast
V-Atpase
Length = 392
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 22/120 (18%)
Query: 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94
K+ DL+ SL++ ++ L+ H +L S L+ F + LS
Sbjct: 166 KTGDLSVR-SLHDIVKPEDFVLNSEHLTTVLVAVPKS----------LKSDFEKSYETLS 214
Query: 95 NNVIPNEASVTSVARLAASKNDGDYAFV---LIKRMNNEFNVVPRLRTYDPALFCFCENL 151
NV+P ASV + D +Y L K+ EF R + + P F + E L
Sbjct: 215 KNVVPASASVIA--------EDAEYVLFNVHLFKKNVQEFTTAAREKKFIPREFNYSEEL 266
>pdb|1TMO|A Chain A, Trimethylamine N-Oxide Reductase From Shewanella Massilia
Length = 829
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 355 GNKWPLVILHNKRLRSLWENPSHRNLVEEWN 385
G WPL++ H+ + LW N ++NL WN
Sbjct: 201 GTSWPLILEHSDTI-VLWSNDPYKNLQVGWN 230
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 254 WVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSE-FQDWLE 312
W+ ++ S DE G C + V +DD R Q REV+ N S+ F +
Sbjct: 64 WIGQQSSRDEQGACA-----VLAVQLDDYLGGRPVQ-------HREVQGNESDLFMSYFP 111
Query: 313 KNANYEAIVDGANIGLYQQNFTEGGFS--VPQLDAVVKKLYERSGNK 357
+ YQ+ E GF VP + VV++LY+ G K
Sbjct: 112 RGLK------------YQEGGVESGFKHVVPN-EVVVQRLYQVKGAK 145
>pdb|3IX7|A Chain A, Crystal Structure Of A Domain Of Functionally Unknown
Protein From Thermus Thermophilus Hb8
pdb|3IX7|B Chain B, Crystal Structure Of A Domain Of Functionally Unknown
Protein From Thermus Thermophilus Hb8
Length = 134
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Query: 320 IVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRN 379
+VDG + F EG VP V+K+L + ++ PL +R E
Sbjct: 15 LVDGRVAEVAAVGFLEGPLWVPHF--VLKELQHFADSQDPLRRAKGRRGLETLERLREAA 72
Query: 380 LVEEWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLLVTND 418
+E VL TP G + D L+ A L LVTND
Sbjct: 73 PLE------VLETTPKGESVDEKLLFLARDLEAALVTND 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,337,720
Number of Sequences: 62578
Number of extensions: 487687
Number of successful extensions: 1369
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 11
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)