BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013497
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1
Length = 528
Score = 561 bits (1447), Expect = e-159, Method: Compositional matrix adjust.
Identities = 283/448 (63%), Positives = 349/448 (77%), Gaps = 15/448 (3%)
Query: 10 SKPNKKRKTNPNPETNFLINLQSCTKSKDLTTAISLYESA-HSQNLRLSLHHFNALLYLC 68
S+PNKK+K + NPETN L NL SC+KSKDL+ A++LY++A S +RLS HF LLYLC
Sbjct: 17 SRPNKKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLC 76
Query: 69 SDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128
S S TD S + A+ GF +FD+M+S+ + PNEASVTSVARLAA+K +GDYAF ++K
Sbjct: 77 SASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFV 136
Query: 129 NEFNV-VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187
+ V +PRLRTY PAL CFCE LEAEK YEVEEHM G++LE+ EI+ALLKVSA TGR
Sbjct: 137 SVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGR 196
Query: 188 VEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGG 242
KVY+YL KLR V CV+EET KIIE+WF G+K NG+ D+G+++ AVL NGGG
Sbjct: 197 ENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGG 256
Query: 243 WHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKA 302
WHG GW+G+GKW VK+G+V +G+C SC +QLACVD ++ ET++F S+ ALAM+R+ K
Sbjct: 257 WHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKM 316
Query: 303 N-------FSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSG 355
N FSEFQDWLEK+ +YEAIVDGANIGLYQQNF +G FS+ QL++V+K+LY SG
Sbjct: 317 NSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESG 376
Query: 356 N-KWPLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLL 414
N KWPL++LH +R+++L ENP+HRNLVEEW GVLY TP GSNDDWYWLYAA KL+CLL
Sbjct: 377 NNKWPLILLHKRRVKTLLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYAAAKLKCLL 436
Query: 415 VTNDEMRDHIFELLGSNFFLKWKERHQT 442
VTNDEMRDHIFELLGS FF KWKERHQ
Sbjct: 437 VTNDEMRDHIFELLGSTFFQKWKERHQV 464
>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1
Length = 576
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 271/435 (62%), Positives = 338/435 (77%), Gaps = 15/435 (3%)
Query: 23 ETNFLINLQSCTKSKDLTTAISLYESA-HSQNLRLSLHHFNALLYLCSDSATDPSSKDSA 81
E + LINL SC+K KDL+ A++LY++A S ++RL+ HF +LLYLCS +DPS + A
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQTVA 148
Query: 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTY 140
+ GF++FD+M+S+ + PNE+SVT+VARLAA+K DGDYAF L+K + V VPRLRTY
Sbjct: 149 IDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTY 208
Query: 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200
PAL CFC+ LEAEK YEVE+HM G+ LE+ EI+ALLKVSA TGR KVY+YLQKLR
Sbjct: 209 APALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRE 268
Query: 201 TVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 255
V CV+EET K IE+WF G K NG+ D+ L++ AVLKNGGGWHGLGW+G+GKW+
Sbjct: 269 CVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWI 328
Query: 256 VKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVK-------ANFSEFQ 308
VK+G+V +GKC SC + LACVD ++ ETE F S+ LAMER+ K A+FSEFQ
Sbjct: 329 VKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQ 388
Query: 309 DWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNK-WPLVILHNKR 367
+WLEK+ +YEAI+DGANIGLYQQNF +GGFS+PQL+AVVK+LY +SG+K PL++LH KR
Sbjct: 389 EWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKKR 448
Query: 368 LRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFEL 427
+ +L ENP+HRNLVEEW VLY TP GSNDDWYWLYAA KL+CLLVTNDEMRDHIFEL
Sbjct: 449 VNALLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIFEL 508
Query: 428 LGSNFFLKWKERHQT 442
L ++FF KWKERHQ
Sbjct: 509 LSNSFFQKWKERHQV 523
>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=PRORP1 PE=1 SV=1
Length = 572
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/446 (47%), Positives = 296/446 (66%), Gaps = 13/446 (2%)
Query: 4 TTSTNPSKPNKKRKTNPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNA 63
+ S N S+ KK+ +PE L C+K D+ A+ LY+ A ++LS +H+N
Sbjct: 78 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV 137
Query: 64 LLYLCS--DSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAF 121
LLY+CS ++AT+ SS + L GF +F QM+ + V+PNEA+ T+ ARLA +K+D + AF
Sbjct: 138 LLYVCSLAEAATE-SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 196
Query: 122 VLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181
++K+M F + PRLR+Y PALF FC +A+KAYEV+ HM + E+ E+AALLKV
Sbjct: 197 DMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 255
Query: 182 SAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSC---DLGLVKNAVLK 238
S +T +KVY+ LQ+LR VR V++ T +IE+WF + D+ +++AV+
Sbjct: 256 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 315
Query: 239 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMER 298
GGGWHG GW+G GKW VKR +DE+G C C ++L C+DI+ ETE FA S+ LA ER
Sbjct: 316 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACER 375
Query: 299 EVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNK- 357
EVKANF++FQ+WLE++ ++A++DGAN+GL Q FS QL+ V++ + S +K
Sbjct: 376 EVKANFNQFQEWLERHGPFDAVIDGANMGLVNQR----SFSFFQLNNTVQRCQQISPSKR 431
Query: 358 WPLVILHNKRLRSLWEN-PSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKLRCLLVT 416
PLVILH R+ P +R L+E+W G LY TP GSNDDWYWLYAAV +CLLVT
Sbjct: 432 LPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVT 491
Query: 417 NDEMRDHIFELLGSNFFLKWKERHQT 442
NDEMRDH+F+LLG++FF +WKE+HQ
Sbjct: 492 NDEMRDHLFQLLGNSFFPRWKEKHQV 517
>sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391
PE=1 SV=2
Length = 583
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 253 KWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAME------REVKANFSE 306
+W + +V +SG+C CG + + + E E + ++ +
Sbjct: 334 QWKGQFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKR 393
Query: 307 FQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNK 366
F+++++ ++ ++DG N+ E L VV +L +R+ L H
Sbjct: 394 FENFIKSRPPFDVVIDGLNVAKMFPKVRESQL----LLNVVSQLAKRNLRLLVLGRKHML 449
Query: 367 RLRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKL--RCLLVTNDEMRDH- 423
R S W R+ +EE ++ + S DD + LYA + C +T D MRDH
Sbjct: 450 RRSSQWS----RDEMEEVQKQASCFFADDISEDDPFLLYATLHSGNHCRFITRDLMRDHK 505
Query: 424 --IFELLGSNFFLKWKERHQ 441
+ + F KW++ HQ
Sbjct: 506 ACLPDAKTQRLFFKWQQGHQ 525
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 79/177 (44%), Gaps = 11/177 (6%)
Query: 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSA 81
+ ++ +Q+C D + ++LY+ + +++ H F+ ++ LC K+
Sbjct: 292 KITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLC---------KEGK 342
Query: 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141
L G+ VF+ M+ PN A T + A + A L+ RM +E P + TY
Sbjct: 343 LNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE-GFKPDVVTYS 401
Query: 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198
+ C+N E+A + GL++ ++L+ + GRV++ + +++
Sbjct: 402 VVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEM 458
>sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus
GN=Mrpp3 PE=2 SV=1
Length = 587
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 19/200 (9%)
Query: 253 KWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAME------REVKANFSE 306
+W + ++ +SG+C SCG + + + E E +++ ++ +
Sbjct: 334 QWKGQFTTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKR 393
Query: 307 FQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNK 366
F+ +++ ++ ++DG N+ + F +G S L +V +L +++ L H
Sbjct: 394 FERFVKSCPPFDIVIDGLNVA---KMFPKGRES-QNLLGIVSQLAQQNLQLLVLGRKHML 449
Query: 367 RLRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVK--LRCLLVTNDEMRDH- 423
R S W ++ +E+ ++ + + S DD + LYA + C +T D +RDH
Sbjct: 450 RPSSQWR----KDEMEQVRKQAHCFFADNISEDDPFLLYATLNSGSHCKFITKDLLRDHK 505
Query: 424 --IFELLGSNFFLKWKERHQ 441
+ + F KW++ HQ
Sbjct: 506 ACLPDARAQRLFFKWQQGHQ 525
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141
++ F F +ML + PNE + + R S D D + L +M E + P L Y+
Sbjct: 511 IKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMK-ENGLSPDLYAYN 569
Query: 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187
+ FC+ + +KA E+ + M +GL + + L+K +E+GR
Sbjct: 570 ATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGR 615
>sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391
PE=2 SV=1
Length = 584
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 85/200 (42%), Gaps = 19/200 (9%)
Query: 253 KWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAME------REVKANFSE 306
+W + ++ +SG+C CG + + + E E + + ++ +
Sbjct: 331 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 390
Query: 307 FQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNK 366
F+ ++ ++ ++DG N+ + F +G S L VV +L +++ L H
Sbjct: 391 FESFVNSCPPFDIVIDGLNVA---KMFPKGRESQ-NLLGVVSQLAQQNLQLLVLGRKHML 446
Query: 367 RLRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWYWLYAAVKL--RCLLVTNDEMRDH- 423
R S W + +E+ ++ + + S DD + LYA + C +T D +RDH
Sbjct: 447 RPSSQWR----KEEMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCKFITKDLLRDHK 502
Query: 424 --IFELLGSNFFLKWKERHQ 441
+ + F KW++ HQ
Sbjct: 503 ACLPDARTQRLFFKWQQGHQ 522
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL 144
G + D+ML P+EA+V+S+ + + A L+KR+ +F V P L Y+ +
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV-DFGVSPNLFVYNALI 374
Query: 145 FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201
C+ + +A + + MG +GL + L+ + G+++ +L ++ T
Sbjct: 375 DSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
>sp|O80608|FB96_ARATH Putative F-box protein At2g02890 OS=Arabidopsis thaliana
GN=At2g02890 PE=4 SV=1
Length = 531
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 120 AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172
AF L F+V Y PAL CFCE + K YEVE HM LE+
Sbjct: 75 AFTLSLASTAAFSVFSLASAYAPALLCFCETFGSLKGYEVENHMNASVTMLEE 127
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 8/144 (5%)
Query: 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHG 85
+ + +Q+C K+ DL A SL + L + + L S K +
Sbjct: 271 YSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILAS-------VKQGNMDDA 323
Query: 86 FRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF 145
R+ D+MLS+ + N + TS+ ND A VL +M E P T+ +
Sbjct: 324 IRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKE-GPSPNSVTFSVLIE 382
Query: 146 CFCENLEAEKAYEVEEHMGLMGLS 169
F +N E EKA E + M ++GL+
Sbjct: 383 WFRKNGEMEKALEFYKKMEVLGLT 406
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 10/185 (5%)
Query: 14 KKRKTNPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSAT 73
K+ +PN T F + K+ DL A+SLY+ + L++ + AL+
Sbjct: 190 KRDALSPNVVT-FTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI-------- 240
Query: 74 DPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV 133
D K ++ ++ +M+ + V PN T++ + D D A + +M N+ +
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQ-GM 299
Query: 134 VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193
+ Y + C N + ++A E+ E M L + ++ ++GR++
Sbjct: 300 RLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVN 359
Query: 194 YLQKL 198
KL
Sbjct: 360 MYHKL 364
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 88 VFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF 147
+ QML +VIPN + +S+ K + A L+++M ++ NVVP TY +
Sbjct: 388 IITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQ-NVVPNGFTYGTVIDGL 446
Query: 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS---TVRC 204
+ + E A E+ + M L+G+ + AL+ GR+++V ++ + S T+
Sbjct: 447 FKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQ 506
Query: 205 VNEETGKIIEDWFSG 219
+N + +I+ +F G
Sbjct: 507 INYTS--LIDVFFKG 519
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
K + +++ +RV +M S V PN S + R + + D AF + ++M P
Sbjct: 354 KANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVCE--PDA 411
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
TY + FCE E E A +V ++M G+ + L+ E +K L++
Sbjct: 412 DTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEE 471
Query: 198 L 198
+
Sbjct: 472 M 472
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 38.9 bits (89), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 4/152 (2%)
Query: 70 DSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN 129
+S P K +VFD+ML + P + + R+ + G+ F L+ +M
Sbjct: 377 NSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRT---GEEVFELLAKMR- 432
Query: 130 EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189
+ P + TY + C + + + + M + + ++ G++E
Sbjct: 433 KMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIE 492
Query: 190 KVYQYLQKLRSTVRCVNEETGKIIEDWFSGQK 221
+ Y Y ++++ NE +I+ WFSG++
Sbjct: 493 EAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQ 524
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 56 LSLHHFNALLYLCSD--SATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113
+ L+ FN +Y C+ + S +D ++ + +ML + P+ A+ + + +
Sbjct: 149 MGLYGFNPSVYTCNAILGSVVKSGEDVSV---WSFLKEMLKRKICPDVATFNILINVLCA 205
Query: 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173
+ + + L+++M P + TY+ L +C+ + A E+ +HM G+ +
Sbjct: 206 EGSFEKSSYLMQKMEKS-GYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVC 264
Query: 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ 220
L+ + R+ K Y L+ +R + NE T + + FS +
Sbjct: 265 TYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNE 311
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Query: 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141
++ F V ++M+++ + P + +++ R A D A +L++ M + +VP + ++
Sbjct: 910 IKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFML-KMKLVPTIASFT 968
Query: 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201
+ C+N +A E+ M GL L+ L+ G + ++ ++++
Sbjct: 969 TLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGD 1028
Query: 202 VRCVNEETGKII-------EDWFSGQKV 222
N T K + E FSG +
Sbjct: 1029 GFLANATTYKALIRGLLARETAFSGADI 1056
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKD 79
P+ +T + I ++ + +D + A +++ +N + L +NALL D K
Sbjct: 206 PSAKT-YSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALL--------DALCKS 256
Query: 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT 139
+ G+++F +M + + P+ S D A+ ++ RM +++VP + T
Sbjct: 257 GDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMK-RYDLVPNVYT 315
Query: 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199
++ + C+N + + AY + + M G + + +++ + V + + L ++
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375
Query: 200 STVRCVNE 207
T +C+ +
Sbjct: 376 RT-KCLPD 382
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 6/159 (3%)
Query: 84 HGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPA 143
H F + ++P+ + + + R A D A + M E N V L Y+
Sbjct: 191 HAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEML-ERNCVVDLLAYNAL 249
Query: 144 LFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR 203
L C++ + + Y++ + MG +GL + A + + G V Y+ L +++
Sbjct: 250 LDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDL 309
Query: 204 CVNEET-GKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGG 241
N T II+ +KV+ D L+ + +++ G
Sbjct: 310 VPNVYTFNHIIKTLCKNEKVD----DAYLLLDEMIQKGA 344
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
K + G ++F +M ++ N + ++ + D D A +M+ F + P +
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF-FGISPDI 400
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
TY+ L C+N E EKA + E M + L+ +++ +TG+VE+ +
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS 460
Query: 198 L 198
L
Sbjct: 461 L 461
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141
+ G VF +M ++ N + T++ D D A ++ K+M ++ V P + TY+
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD-GVHPDIMTYN 430
Query: 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189
L C N E A V E+M + L+ +++ + G+VE
Sbjct: 431 ILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478
>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740
OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1
Length = 727
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 83 RHG-FRVFDQ----MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
R+G FR DQ M S P+E + R+ A G + + ++M +F PR+
Sbjct: 170 RNGHFRAADQLPELMDSQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMK-KFGFKPRV 228
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
Y+ + +N + A V E GL E L+K + GR+E++ + LQ+
Sbjct: 229 FLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQR 288
Query: 198 LR 199
+R
Sbjct: 289 MR 290
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 87 RVFDQMLSNNVIPNEASVTSVARL---AASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPA 143
R+F + ++ PN S ++ R+ A + + F L++R + E NVV TY+
Sbjct: 351 RLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVV----TYNTM 406
Query: 144 LFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201
+ + + +E EKA + + M G+ + ++ + + G++++ QKLRS+
Sbjct: 407 IKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSS 464
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 87 RVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC 146
+V+ ++ + P+E + ++ + + ++L+++M N + P+L TY +
Sbjct: 948 QVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRN-LGLDPKLDTYKSLISA 1006
Query: 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199
F + E+A ++ E + GL L++ ++K+S ++G K + LQ ++
Sbjct: 1007 FGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMK 1059
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 31/186 (16%)
Query: 25 NFLINLQSCTKSKDLTT--AISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSAL 82
N LIN + KS LT A+ L + + LR +N LL CS +DS L
Sbjct: 264 NTLINAR--LKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACS--------RDSNL 313
Query: 83 RHGFRVFDQMLSNNVIPN----EASVTSVAR--LAASKNDGDYAFVLIKRMNNEFNV--- 133
+VF+ M ++ P+ A ++ R LAA +R+ E +
Sbjct: 314 DGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEA----------ERLFMELELKGF 363
Query: 134 VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193
P TY+ L+ F EK EV + M MG ++ ++ + + G+++ Q
Sbjct: 364 FPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQ 423
Query: 194 YLQKLR 199
+ ++
Sbjct: 424 LYKDMK 429
>sp|O75127|PTCD1_HUMAN Pentatricopeptide repeat-containing protein 1, mitochondrial
OS=Homo sapiens GN=PTCD1 PE=1 SV=2
Length = 700
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSAL 82
E+N+ + + C + L A +LY ++L S + AL +C++S KDSAL
Sbjct: 173 ESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPW----KDSAL 228
Query: 83 RHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV 134
+ ++ Q+ + N N + ++ ++AA D + K + ++ +VV
Sbjct: 229 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVV 280
>sp|Q5R655|PTCD1_PONAB Pentatricopeptide repeat-containing protein 1, mitochondrial
OS=Pongo abelii GN=PTCD1 PE=2 SV=1
Length = 698
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSAL 82
E+N+ + C + L A SLY ++L S + AL +C++S KDSAL
Sbjct: 171 ESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPW----KDSAL 226
Query: 83 RHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV 134
+ ++ Q+ + N N + ++ ++AA D + K + ++ +VV
Sbjct: 227 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVV 278
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 18/201 (8%)
Query: 71 SATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNE 130
S D K + +FD + V PN T++ D A +++++M ++
Sbjct: 502 SMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK 561
Query: 131 FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190
N +P T++ + C + + ++A +EE M +GL L+ + G +
Sbjct: 562 -NCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDH 620
Query: 191 VYQYLQKLRSTVRCVNEET-----------GKII--EDWFSGQKVNGVSCDLGLVKNAVL 237
Y Q++ S+ + T G+++ ED + + NGVS DL ++++
Sbjct: 621 AYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDL-FTYSSLI 679
Query: 238 KNGGGWHGLGWIGQGKWVVKR 258
K G+ LG V+KR
Sbjct: 680 K---GYGDLGQTNFAFDVLKR 697
Score = 36.6 bits (83), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT 139
S + V ++ML V+P+ + S+ + D A+ L+ MN+ +VP T
Sbjct: 441 SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDR-GLVPDQWT 499
Query: 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199
Y + C++ E+A ++ + + G++ AL+ + G+V++ + L+K+
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 200 S 200
S
Sbjct: 560 S 560
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 49/119 (41%)
Query: 77 SKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136
S+ + H R+ + + S +E SV + + D A + KRM F P
Sbjct: 54 SETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPA 113
Query: 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYL 195
+R+Y+ L F E + K + + G++ Q L+K+S + EK +L
Sbjct: 114 IRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFL 172
>sp|Q6A037|N4BP1_MOUSE NEDD4-binding protein 1 OS=Mus musculus GN=N4bp1 PE=1 SV=2
Length = 893
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 320 IVDGANIGL---YQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS 376
++DG+N+ + ++ F+ G A+ + + + GN+ V + R R N +
Sbjct: 619 VIDGSNVAITHGLKKFFSCRGI------AIAVEYFWKLGNRNITVFVPQWRTRR-DPNIT 671
Query: 377 HRNLVEEWNEKGVLYMTPH--------GSNDDWYWLYAAVKLRCLLVTNDEMRDHIFE 426
++ + + E G+L +TP S+DD + L+ A K ++VTND R+ + E
Sbjct: 672 EQHFLTQLQELGILSLTPARMVFGERIASHDDRFLLHLADKTGGIIVTNDNFREFVTE 729
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 42 AISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101
AIS++ S LR +L +NA++ C + + + FD+M N V P+
Sbjct: 287 AISVFNSMKEYGLRPNLVTYNAVIDACGKGGME-------FKQVAKFFDEMQRNGVQPDR 339
Query: 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEE 161
+ S+ + + + A L M N + + +Y+ L C+ + + A+E+
Sbjct: 340 ITFNSLLAVCSRGGLWEAARNLFDEMTNR-RIEQDVFSYNTLLDAICKGGQMDLAFEILA 398
Query: 162 HMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199
M + + + ++ A+ GR ++ ++R
Sbjct: 399 QMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
>sp|Q5XEY7|PP309_ARATH Pentatricopeptide repeat-containing protein At4g14170
OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2
Length = 477
Score = 36.2 bits (82), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFV-LIKRMNNEFNVVPRL 137
D + F++FD+ML + PN +VT + L+A + G L R+ E+N+VP L
Sbjct: 314 DGDVVMSFKLFDEMLKEGIEPN--AVTFLGVLSACAHGGLVEKSWLYFRLMQEYNIVPEL 371
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHM 163
+ Y C E+A + E M
Sbjct: 372 KHYASVADCMSRAGLLEEAEKFLEDM 397
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 10/153 (6%)
Query: 11 KPNKKRKTNPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD 70
K +K + P T F+ + KS D+ ++ +++ ++H FN L+
Sbjct: 578 KEMQKLRHRPTTRT-FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI----- 631
Query: 71 SATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNE 130
+ + + + D+M V NE + T + + AS D AF R+ NE
Sbjct: 632 ---NGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE 688
Query: 131 FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163
+ + TY+ L C++ + A V + M
Sbjct: 689 -GLDVDIFTYEALLKACCKSGRMQSALAVTKEM 720
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 134 VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193
VP + T++ + E + EKA E+ + M L G+S + +++ A G K ++
Sbjct: 621 VPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFE 680
Query: 194 YLQKLR 199
Y +L+
Sbjct: 681 YFTRLQ 686
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 9/165 (5%)
Query: 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVF 89
L++C KS + +A+++ + ++N+ + +N L+ D ++ + +
Sbjct: 701 LKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILI--------DGWARRGDVWEAADLI 752
Query: 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149
QM V P+ + TS + D + A I+ M V P ++TY + +
Sbjct: 753 QQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME-ALGVKPNIKTYTTLIKGWAR 811
Query: 150 NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY 194
EKA E M MG+ ++ LL + + Y Y
Sbjct: 812 ASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIY 856
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 15 KRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSA 72
KR +P+ T N LIN C + L A ++E S++ L +N L+ C
Sbjct: 283 KRSIDPDIFTYNSLIN-GFCMHDR-LDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC---- 336
Query: 73 TDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFN 132
K + G +F +M ++ + + T++ + D D A + K+M ++
Sbjct: 337 -----KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSD-G 390
Query: 133 VVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189
V P + TY L C N + EKA EV ++M + L+ +++ + G+V+
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
>sp|O75113|N4BP1_HUMAN NEDD4-binding protein 1 OS=Homo sapiens GN=N4BP1 PE=1 SV=4
Length = 896
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 320 IVDGANIGL---YQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS 376
++DG+N+ + ++ F+ G A+ + + + GN+ V + R R N +
Sbjct: 621 VIDGSNVAITHGLKKFFSCRGI------AIAVEYFWKLGNRNITVFVPQWRTRR-DPNVT 673
Query: 377 HRNLVEEWNEKGVLYMTPH--------GSNDDWYWLYAAVKLRCLLVTNDEMRDHIFE 426
++ + + E G+L +TP S+DD + L+ A K ++VTND R+ + E
Sbjct: 674 EQHFLTQLQELGILSLTPARMVFGERIASHDDRFLLHLADKTGGIIVTNDNFREFVNE 731
>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950
OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
Length = 483
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 89 FDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC 148
+++ML N S ++ + S D AF + K M+ E V P TY+ + FC
Sbjct: 376 YNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMS-ETGVTPNAITYNALIKGFC 434
Query: 149 ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180
+ + EK ++ + + +GL AAL++
Sbjct: 435 KENKVEKGLKLYKELKALGLKPSGMAYAALVR 466
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 14/147 (9%)
Query: 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALL--YLCSDSATDPSS 77
P P + ++ C+K L A +++ S+N++ ++ N+++ Y S +A+D S
Sbjct: 548 PTPISYSILVNALCSKGH-LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNE-FNVVPR 136
++M+S +P+ S ++ + + AF L+K+M E +VP
Sbjct: 607 ----------FLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPD 656
Query: 137 LRTYDPALFCFCENLEAEKAYEVEEHM 163
+ TY+ L FC + ++A V M
Sbjct: 657 VFTYNSILHGFCRQNQMKEAEVVLRKM 683
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
KD + Q+ V P+ + ++ +SK + AF L+ M + P +
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGK-GFSPGV 305
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
TY+ + C++ + E+A EV M GLS + +LL + + G V + +
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365
Query: 198 LRS 200
+RS
Sbjct: 366 MRS 368
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 27/124 (21%)
Query: 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198
TY L C+C+ L EKA + M + ++ +L+ + +TG EKV +Q+L
Sbjct: 125 TYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQEL 184
Query: 199 R------------------------STVRCVNEET---GKIIEDWFSGQKVNGVSCDLGL 231
+ S V V EE G++ DW + + + D GL
Sbjct: 185 KAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGL 244
Query: 232 VKNA 235
+ A
Sbjct: 245 SQKA 248
>sp|Q5ZLE9|N4BP1_CHICK NEDD4-binding protein 1 OS=Gallus gallus GN=N4BP1 PE=2 SV=1
Length = 931
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 320 IVDGANIGLYQ--QNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS- 376
I+DG+N+ + + F FS + V ++R G++ V + R R +PS
Sbjct: 663 IIDGSNVAISHGLRKF----FSCRGIAIAVDYFWKR-GHRNITVFVPQWRTR---RDPSI 714
Query: 377 -HRNLVEEWNEKGVLYMTPH--------GSNDDWYWLYAAVKLRCLLVTNDEMRDHIFEL 427
++ + + + G+L +TP S+DD + L+ A K ++VTND R+ + E
Sbjct: 715 TEQDFLTQLEDVGILSLTPSRMVLGARIASHDDRFLLHLADKTGGVIVTNDNFREFVTES 774
Query: 428 LGSNFFLKWKE 438
L W+E
Sbjct: 775 LA------WRE 779
>sp|Q8VZE4|PP299_ARATH Pentatricopeptide repeat-containing protein At4g01570
OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1
Length = 805
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/182 (19%), Positives = 79/182 (43%), Gaps = 7/182 (3%)
Query: 39 LTTAISLYESAHSQNLRLSLHH-FNALLYLCSDSATDPSSKDSALRHGF-----RVFDQM 92
+ T +S+Y S +L L FN + S T S S ++ G+ V DQM
Sbjct: 597 MNTFLSIYLSKGDLSLACKLFEIFNGMGVTDLTSYTYNSMMSSFVKKGYFQTARGVLDQM 656
Query: 93 LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE 152
N + A+ + + D A ++ R+ + + + Y+ + +
Sbjct: 657 FENFCAADIATYNVIIQGLGKMGRADLASAVLDRLTKQGGYLD-IVMYNTLINALGKATR 715
Query: 153 AEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKI 212
++A ++ +HM G++ + +++V+++ G++++ Y+YL+ + N T I
Sbjct: 716 LDEATQLFDHMKSNGINPDVVSYNTMIEVNSKAGKLKEAYKYLKAMLDAGCLPNHVTDTI 775
Query: 213 IE 214
++
Sbjct: 776 LD 777
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 27/186 (14%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
K A+ V + M+ N V+P+ + S+ S A +K+M ++ V P +
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDV 301
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
TY + C+N +A ++ + M GL E LL+ A G + +++ L
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 361
Query: 198 LR-----------STVRCVNEETGKIIEDWFSGQK---------------VNGVSCDLGL 231
+ S + C + GK+ + K V G+ C G
Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421
Query: 232 VKNAVL 237
V++A+L
Sbjct: 422 VEDAML 427
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Query: 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158
P+ S T+V + D D A+ M + ++P + TY+ + C+ +KA E
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVVTYNSIIAALCKAQAMDKAME 252
Query: 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200
V M G+ + ++L +G+ ++ +L+K+RS
Sbjct: 253 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 83 RHGF-----RVFDQMLSNNVIPNEASVTSVARLAASKNDG--DYAFVLIKRMNNEFNVVP 135
+HGF FDQM+ +NV PN VT V L+A + G D + MN+E+ + P
Sbjct: 770 KHGFGSEALDSFDQMIHSNVRPNH--VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP 827
Query: 136 RLRTY 140
+ Y
Sbjct: 828 KPEHY 832
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 91 QMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN-EFNVVPRLRTYDPALFCFCE 149
+M+SN + P+E + S+ + D AF L+ M + EF+ P + TY+ L FC+
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH--PSVVTYNIVLLGFCK 520
Query: 150 NLEAEKAYEVEEHM 163
E A V E M
Sbjct: 521 AHRIEDAINVLESM 534
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 4/143 (2%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKR---MNNEFNVV 134
K+S L VF +ML V PN S + A D +A L+ + M+ F V
Sbjct: 230 KESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNF-VS 288
Query: 135 PRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY 194
P TY+ + FC+ + A + M G+ ++ AL+ G ++ +
Sbjct: 289 PNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRL 348
Query: 195 LQKLRSTVRCVNEETGKIIEDWF 217
++ S VN I W
Sbjct: 349 CDEMTSKGLVVNTVIYNSIVYWL 371
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 13 NKKRKTNPNP-ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDS 71
+K RK+ +P + F L +CT S L S H Q L + L + + S+S
Sbjct: 210 SKMRKSTSDPNDYTFTALLSACTGSGALGQG----RSVHCQTLHMGLKSYLHI----SNS 261
Query: 72 ATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109
K L+ FR+FDQ + +V+ + + A+
Sbjct: 262 LISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQ 299
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 79/202 (39%), Gaps = 31/202 (15%)
Query: 15 KRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSA 72
KR+ P+ T N LI+ +C K ++ A YE ++L + ++ L+Y LC S
Sbjct: 249 KREIYPDVFTFNALID--ACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 73 TDPS--------------------------SKDSALRHGFRVFDQMLSNNVIPNEASVTS 106
D + K + HG ++F +M V+ N + T
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166
+ + + A + +RM V P + TY+ L C+N + EKA + M
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVF-CGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKN 425
Query: 167 GLSLEQQEIAALLKVSAETGRV 188
G+ + +++ + G V
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEV 447
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/183 (19%), Positives = 76/183 (41%), Gaps = 9/183 (4%)
Query: 16 RKTNPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDP 75
+ NP T I + +C++ ++ A S++ + ++ L+L + +N L++
Sbjct: 436 KSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLDVVTYNNLMH--------G 487
Query: 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135
K L F + D+M S + P+ A+ + + D A +I + VP
Sbjct: 488 YGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRR-GFVP 546
Query: 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYL 195
+ + F + + ++A+ + +M + + + +ALL + R+EK
Sbjct: 547 STLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLF 606
Query: 196 QKL 198
KL
Sbjct: 607 NKL 609
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 19 NPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSK 78
NPN T + I + S KSK + A+ +YE +++L+++ S + K
Sbjct: 340 NPNVVT-YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTG---RFK 395
Query: 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVPR 136
D+A +F+ M + V + ++ A + + A L+KRM +E + P
Sbjct: 396 DAA-----EIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPN 450
Query: 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196
+ TY P L C + + + HM +S++ L++ +G+VE+ + +
Sbjct: 451 VETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFE 510
Query: 197 KLRSTVRCVNEETGKIIED 215
+ + T K++ D
Sbjct: 511 EAVRKGMVPRDSTCKMLVD 529
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
K + G ++F +M V+ N + T + + D A + +M++ P +
Sbjct: 340 KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSR-RAPPDI 398
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
RTY+ L C N + EKA + E+M + + +++ + G+VE +
Sbjct: 399 RTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCS 458
Query: 198 LRS 200
L S
Sbjct: 459 LFS 461
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 45 LYESAHSQNLRLSLHHF-NALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103
L E+ H L +S F N + Y ++ + K + G +F +M ++ N +
Sbjct: 381 LDEAKHMFELMISKDCFPNVVTY---NTLINGFCKAKRIDEGVELFREMSQRGLVGNTVT 437
Query: 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163
T++ D D A ++ K+M ++ V P + TY+ L C+N + EKA V E++
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQMVSD-GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 88 VFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF 147
VFD+M+ V+P+ A+ ++ ++ K++ + A V+ + M P + TY+ +
Sbjct: 287 VFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRR-GYEPNVTTYNVLIRGL 345
Query: 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207
E + E+ + M G Q +++ +E VEK +K+ S N
Sbjct: 346 FHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNL 405
Query: 208 ETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238
+T I+ SG V S D+ + +L+
Sbjct: 406 DTYNIL---ISGMFVRKRSEDMVVAGKLLLE 433
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137
K ++ FRV + M+ PN + T++ + D D A L+ M + + P +
Sbjct: 433 KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW-KIGLQPNI 491
Query: 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197
TY+ + C++ E+A ++ GL+ + L+ ++G ++K + L++
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKE 551
Query: 198 L 198
+
Sbjct: 552 M 552
>sp|Q6DJS0|N4BP1_XENTR NEDD4-binding protein 1 OS=Xenopus tropicalis GN=n4bp1 PE=2 SV=1
Length = 819
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 22/120 (18%)
Query: 320 IVDGANIGL---YQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENP- 375
I+DG+N+ + Q+ F+ G A+ + + + G++ V + R + +P
Sbjct: 521 IIDGSNVAMSHGLQRFFSCRGI------ALAVEYFWKKGHRNITVFVPQWRTK---RDPF 571
Query: 376 -SHRNLVEEWNEKGVLYMTPH--------GSNDDWYWLYAAVKLRCLLVTNDEMRDHIFE 426
+ ++ +++ E G+L TP S+DD + L+ A + +++TND R+ + E
Sbjct: 572 ITEQHFLQQLQELGILSFTPSRTVLGARIASHDDRFLLHLAERTGGIIITNDNFREFVVE 631
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,729,933
Number of Sequences: 539616
Number of extensions: 7137295
Number of successful extensions: 21558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 21293
Number of HSP's gapped (non-prelim): 309
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)