Query 013497
Match_columns 442
No_of_seqs 433 out of 2902
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-41 2.3E-46 367.9 27.4 314 14-353 462-783 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6.9E-41 1.5E-45 361.7 29.1 295 14-329 497-799 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.4E-36 5.1E-41 329.0 22.7 311 21-359 250-623 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-35 2.3E-40 316.8 26.9 301 17-355 252-559 (697)
5 PLN03081 pentatricopeptide (PP 100.0 5.8E-36 1.3E-40 318.8 24.5 305 15-353 149-455 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 2.4E-35 5.1E-40 321.2 24.2 269 21-353 149-418 (857)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.9 3.1E-23 6.7E-28 177.8 3.4 118 318-442 4-130 (155)
8 PRK11788 tetratricopeptide rep 99.6 1.8E-12 3.9E-17 129.0 25.3 235 25-314 71-312 (389)
9 PF13041 PPR_2: PPR repeat fam 99.5 4.7E-14 1E-18 96.7 6.0 49 135-183 1-49 (50)
10 PF13041 PPR_2: PPR repeat fam 99.5 4.2E-14 9E-19 97.0 5.4 50 99-149 1-50 (50)
11 PRK11788 tetratricopeptide rep 99.5 2.7E-11 5.8E-16 120.6 25.8 266 32-359 44-317 (389)
12 KOG4422 Uncharacterized conser 99.4 2.7E-11 5.8E-16 114.7 17.1 165 23-200 207-384 (625)
13 KOG4422 Uncharacterized conser 99.3 1.4E-09 3.1E-14 103.2 23.8 190 21-225 112-328 (625)
14 TIGR02917 PEP_TPR_lipo putativ 99.2 4.6E-09 1E-13 114.9 27.8 267 25-319 535-805 (899)
15 TIGR02917 PEP_TPR_lipo putativ 99.2 5.9E-09 1.3E-13 114.1 27.6 178 25-217 603-780 (899)
16 PF12854 PPR_1: PPR repeat 99.0 2.5E-10 5.4E-15 70.8 4.3 33 96-128 2-34 (34)
17 PF12854 PPR_1: PPR repeat 99.0 5.1E-10 1.1E-14 69.5 3.4 33 132-164 2-34 (34)
18 KOG4318 Bicoid mRNA stability 98.9 8.3E-09 1.8E-13 105.8 10.1 191 14-217 15-282 (1088)
19 PRK15174 Vi polysaccharide exp 98.8 2.4E-06 5.3E-11 90.7 25.2 177 25-217 78-256 (656)
20 PRK15174 Vi polysaccharide exp 98.8 6.1E-06 1.3E-10 87.7 27.9 162 25-200 112-278 (656)
21 TIGR02521 type_IV_pilW type IV 98.7 1.1E-05 2.4E-10 73.1 25.0 180 25-217 33-213 (234)
22 TIGR00990 3a0801s09 mitochondr 98.6 1.2E-05 2.6E-10 85.1 24.0 161 25-200 333-495 (615)
23 PF13429 TPR_15: Tetratricopep 98.6 3.7E-07 8E-12 86.7 10.6 157 31-200 16-174 (280)
24 TIGR02521 type_IV_pilW type IV 98.5 2.6E-05 5.6E-10 70.6 21.1 164 25-200 67-231 (234)
25 TIGR00756 PPR pentatricopeptid 98.4 4.4E-07 9.4E-12 56.4 4.7 33 139-171 2-34 (35)
26 PF08579 RPM2: Mitochondrial r 98.4 4.6E-06 1E-10 65.6 11.3 90 25-114 27-117 (120)
27 TIGR00756 PPR pentatricopeptid 98.4 5.9E-07 1.3E-11 55.8 4.4 34 25-58 2-35 (35)
28 KOG4318 Bicoid mRNA stability 98.3 3.7E-06 7.9E-11 86.9 11.4 161 44-216 11-248 (1088)
29 PF13429 TPR_15: Tetratricopep 98.3 1.4E-05 3E-10 75.9 14.6 183 25-225 80-264 (280)
30 TIGR00990 3a0801s09 mitochondr 98.3 0.00038 8.3E-09 73.7 26.7 166 36-217 307-477 (615)
31 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.9E-11 54.0 4.3 32 139-170 3-34 (34)
32 PF13812 PPR_3: Pentatricopept 98.2 1.5E-06 3.3E-11 53.7 3.8 33 102-135 2-34 (34)
33 PRK09782 bacteriophage N4 rece 98.2 0.00047 1E-08 75.9 24.9 173 25-217 479-653 (987)
34 PF01535 PPR: PPR repeat; Int 98.1 2.9E-06 6.3E-11 51.1 3.7 29 139-167 2-30 (31)
35 PRK12370 invasion protein regu 98.1 0.00069 1.5E-08 70.8 23.3 167 36-217 317-485 (553)
36 PRK10747 putative protoheme IX 98.1 0.0019 4.1E-08 64.6 25.1 168 36-217 97-273 (398)
37 PF10037 MRP-S27: Mitochondria 98.1 6.6E-05 1.4E-09 74.2 13.8 125 52-185 60-186 (429)
38 PRK09782 bacteriophage N4 rece 98.1 0.00088 1.9E-08 73.8 23.8 151 34-200 520-671 (987)
39 PRK11447 cellulose synthase su 98.1 0.00056 1.2E-08 77.7 23.1 160 25-198 387-555 (1157)
40 PRK11447 cellulose synthase su 98.1 0.0012 2.5E-08 75.2 25.1 173 26-217 464-647 (1157)
41 PRK14574 hmsH outer membrane p 98.0 0.0016 3.4E-08 70.4 24.5 325 22-389 34-398 (822)
42 PF01535 PPR: PPR repeat; Int 98.0 4.5E-06 9.8E-11 50.3 3.0 31 102-133 1-31 (31)
43 PF10037 MRP-S27: Mitochondria 98.0 0.00013 2.8E-09 72.1 13.8 129 88-217 50-183 (429)
44 PRK12370 invasion protein regu 98.0 0.00073 1.6E-08 70.5 20.1 182 20-217 333-519 (553)
45 PRK10049 pgaA outer membrane p 98.0 0.0057 1.2E-07 66.5 27.2 161 25-199 17-177 (765)
46 KOG1840 Kinesin light chain [C 97.9 0.0031 6.6E-08 64.0 22.9 248 20-311 194-477 (508)
47 PRK10747 putative protoheme IX 97.9 0.0015 3.3E-08 65.3 20.7 193 25-236 189-388 (398)
48 TIGR00540 hemY_coli hemY prote 97.9 0.0018 3.8E-08 65.1 19.9 195 25-235 189-396 (409)
49 KOG3777 Uncharacterized conser 97.9 6.7E-06 1.5E-10 80.2 2.3 105 316-427 12-124 (443)
50 TIGR00540 hemY_coli hemY prote 97.9 0.0072 1.6E-07 60.6 24.2 120 36-168 97-218 (409)
51 PRK10049 pgaA outer membrane p 97.8 0.005 1.1E-07 67.0 24.2 175 29-217 278-470 (765)
52 TIGR03302 OM_YfiO outer membra 97.8 0.0037 7.9E-08 57.5 20.1 164 25-201 35-232 (235)
53 PF08579 RPM2: Mitochondrial r 97.8 0.00038 8.1E-09 55.0 10.1 79 105-184 29-116 (120)
54 PRK14574 hmsH outer membrane p 97.7 0.008 1.7E-07 65.1 23.0 168 27-208 296-484 (822)
55 PF06239 ECSIT: Evolutionarily 97.7 0.00046 1E-08 61.1 10.8 109 55-186 44-152 (228)
56 PF06239 ECSIT: Evolutionarily 97.6 0.0012 2.5E-08 58.6 12.1 100 25-152 49-153 (228)
57 PRK11189 lipoprotein NlpI; Pro 97.6 0.046 1E-06 52.2 24.3 149 37-199 40-192 (296)
58 KOG1126 DNA-binding cell divis 97.6 0.0017 3.8E-08 65.8 14.7 178 20-217 416-601 (638)
59 KOG4626 O-linked N-acetylgluco 97.6 0.007 1.5E-07 61.2 18.7 286 25-367 220-536 (966)
60 KOG1129 TPR repeat-containing 97.6 0.0033 7.1E-08 58.8 15.2 167 27-207 227-393 (478)
61 KOG1840 Kinesin light chain [C 97.6 0.0058 1.3E-07 62.1 18.2 172 20-199 278-477 (508)
62 PF04733 Coatomer_E: Coatomer 97.5 0.00086 1.9E-08 63.7 11.3 160 21-200 63-229 (290)
63 COG2956 Predicted N-acetylgluc 97.5 0.013 2.8E-07 54.9 18.2 164 33-208 117-285 (389)
64 PRK11189 lipoprotein NlpI; Pro 97.5 0.073 1.6E-06 50.9 24.0 127 25-164 66-192 (296)
65 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0031 6.7E-08 62.2 14.7 125 59-200 170-296 (395)
66 PF04733 Coatomer_E: Coatomer 97.4 0.003 6.5E-08 60.0 13.7 150 32-201 111-265 (290)
67 KOG2003 TPR repeat-containing 97.4 0.02 4.4E-07 55.8 18.6 232 32-314 428-690 (840)
68 COG3063 PilF Tfp pilus assembl 97.4 0.052 1.1E-06 48.7 19.6 172 25-208 37-208 (250)
69 cd05804 StaR_like StaR_like; a 97.4 0.022 4.7E-07 55.8 19.6 160 30-200 50-214 (355)
70 KOG1070 rRNA processing protei 97.3 0.014 3.1E-07 64.1 17.5 130 22-163 1455-1590(1710)
71 COG2956 Predicted N-acetylgluc 97.3 0.066 1.4E-06 50.3 19.3 139 78-222 119-262 (389)
72 KOG1126 DNA-binding cell divis 97.2 0.0093 2E-07 60.7 15.0 151 30-200 360-517 (638)
73 KOG4626 O-linked N-acetylgluco 97.2 0.022 4.7E-07 57.8 17.3 170 19-206 314-488 (966)
74 COG3071 HemY Uncharacterized e 97.2 0.22 4.7E-06 48.1 24.3 123 81-206 168-297 (400)
75 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.022 4.7E-07 56.3 17.0 114 101-224 169-283 (395)
76 COG3071 HemY Uncharacterized e 97.2 0.11 2.4E-06 50.0 20.4 196 21-236 185-388 (400)
77 PF05843 Suf: Suppressor of fo 97.1 0.011 2.3E-07 56.1 12.9 145 59-217 2-150 (280)
78 KOG2002 TPR-containing nuclear 97.1 0.042 9.2E-07 58.4 18.0 138 78-218 624-762 (1018)
79 PF09976 TPR_21: Tetratricopep 97.1 0.031 6.7E-07 47.2 14.5 125 25-162 14-143 (145)
80 KOG2003 TPR repeat-containing 97.0 0.25 5.4E-06 48.5 21.5 166 35-217 502-669 (840)
81 PRK10370 formate-dependent nit 97.0 0.059 1.3E-06 48.2 16.5 130 81-217 54-187 (198)
82 PF12569 NARP1: NMDA receptor- 97.0 0.32 6.8E-06 50.1 23.6 111 103-217 196-307 (517)
83 COG4783 Putative Zn-dependent 97.0 0.12 2.5E-06 51.3 19.3 160 25-217 309-472 (484)
84 KOG0547 Translocase of outer m 97.0 0.13 2.9E-06 50.9 19.2 150 36-200 339-490 (606)
85 KOG3081 Vesicle coat complex C 96.9 0.042 9.2E-07 50.2 14.7 85 112-201 148-236 (299)
86 TIGR02552 LcrH_SycD type III s 96.9 0.039 8.5E-07 45.6 14.0 107 100-211 16-122 (135)
87 PRK15359 type III secretion sy 96.9 0.038 8.3E-07 46.6 13.7 116 86-210 13-128 (144)
88 TIGR02552 LcrH_SycD type III s 96.9 0.062 1.4E-06 44.4 14.6 82 81-165 32-113 (135)
89 PF05843 Suf: Suppressor of fo 96.9 0.039 8.4E-07 52.3 14.7 98 101-201 1-99 (280)
90 PF12921 ATP13: Mitochondrial 96.8 0.013 2.7E-07 48.2 9.7 97 100-217 1-98 (126)
91 PF09976 TPR_21: Tetratricopep 96.8 0.056 1.2E-06 45.6 13.9 127 59-197 13-143 (145)
92 PRK10370 formate-dependent nit 96.7 0.1 2.3E-06 46.6 15.9 129 38-181 54-186 (198)
93 cd00189 TPR Tetratricopeptide 96.7 0.025 5.4E-07 42.1 10.4 93 104-200 3-96 (100)
94 KOG1155 Anaphase-promoting com 96.7 0.26 5.7E-06 48.6 19.0 178 35-217 274-476 (559)
95 PRK15359 type III secretion sy 96.7 0.065 1.4E-06 45.2 13.6 91 81-176 39-129 (144)
96 KOG1070 rRNA processing protei 96.6 0.16 3.6E-06 56.2 18.7 168 25-207 1499-1669(1710)
97 PF12921 ATP13: Mitochondrial 96.6 0.026 5.7E-07 46.3 10.3 54 131-184 46-100 (126)
98 PRK15179 Vi polysaccharide bio 96.6 0.16 3.5E-06 54.2 18.7 131 57-200 85-216 (694)
99 cd05804 StaR_like StaR_like; a 96.6 0.46 1E-05 46.3 20.7 168 25-202 116-294 (355)
100 KOG2076 RNA polymerase III tra 96.5 1 2.2E-05 48.0 23.2 185 20-217 135-326 (895)
101 KOG3081 Vesicle coat complex C 96.4 0.25 5.5E-06 45.3 15.9 118 78-201 149-271 (299)
102 cd00189 TPR Tetratricopeptide 96.4 0.095 2.1E-06 38.8 11.9 91 28-128 5-95 (100)
103 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.093 2E-06 41.9 12.1 96 103-201 4-105 (119)
104 KOG1155 Anaphase-promoting com 96.3 0.22 4.7E-06 49.1 15.9 162 25-200 332-494 (559)
105 PRK15179 Vi polysaccharide bio 96.3 0.31 6.7E-06 52.0 18.3 140 25-179 88-229 (694)
106 KOG2076 RNA polymerase III tra 96.2 1.7 3.6E-05 46.4 22.7 158 32-200 386-554 (895)
107 PRK02603 photosystem I assembl 96.2 0.22 4.9E-06 43.2 14.2 111 100-217 34-161 (172)
108 KOG1914 mRNA cleavage and poly 96.1 0.13 2.9E-06 51.5 13.6 150 39-200 347-500 (656)
109 TIGR03302 OM_YfiO outer membra 96.1 0.6 1.3E-05 42.6 17.4 99 100-201 32-144 (235)
110 KOG1128 Uncharacterized conser 96.1 0.15 3.1E-06 53.0 14.0 186 25-217 426-633 (777)
111 KOG1129 TPR repeat-containing 96.1 0.16 3.4E-06 47.9 13.0 167 22-201 254-424 (478)
112 PF12895 Apc3: Anaphase-promot 96.0 0.016 3.4E-07 43.9 5.3 76 115-196 3-82 (84)
113 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.26 5.5E-06 39.3 12.7 84 81-167 17-106 (119)
114 COG5010 TadD Flp pilus assembl 95.9 0.36 7.7E-06 44.2 14.3 160 27-200 70-230 (257)
115 KOG0547 Translocase of outer m 95.8 0.33 7.2E-06 48.2 14.4 114 81-199 443-564 (606)
116 COG4783 Putative Zn-dependent 95.8 1.6 3.5E-05 43.5 19.2 159 25-199 276-435 (484)
117 COG5010 TadD Flp pilus assembl 95.7 0.95 2.1E-05 41.5 16.1 124 81-208 81-204 (257)
118 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.31 6.7E-06 47.9 13.6 144 59-217 398-545 (660)
119 KOG1914 mRNA cleavage and poly 95.7 0.57 1.2E-05 47.2 15.7 170 39-217 309-482 (656)
120 KOG2002 TPR-containing nuclear 95.6 0.19 4.2E-06 53.7 13.1 158 37-204 626-801 (1018)
121 PF12569 NARP1: NMDA receptor- 95.6 1.3 2.8E-05 45.7 18.8 163 25-199 145-332 (517)
122 PF12895 Apc3: Anaphase-promot 95.6 0.014 3E-07 44.1 3.6 80 80-162 3-83 (84)
123 PF14559 TPR_19: Tetratricopep 95.6 0.065 1.4E-06 38.4 7.0 52 149-201 3-54 (68)
124 KOG3941 Intermediate in Toll s 95.6 0.099 2.1E-06 48.3 9.3 48 25-72 69-121 (406)
125 KOG3616 Selective LIM binding 95.5 0.24 5.3E-06 51.4 12.8 133 34-197 743-875 (1636)
126 KOG4340 Uncharacterized conser 95.5 0.56 1.2E-05 43.8 13.9 154 33-198 154-336 (459)
127 KOG3941 Intermediate in Toll s 95.4 0.14 3.1E-06 47.2 9.9 100 98-198 64-185 (406)
128 KOG3785 Uncharacterized conser 95.4 0.3 6.5E-06 46.6 12.1 169 22-199 285-455 (557)
129 PRK14720 transcript cleavage f 95.3 3.1 6.6E-05 45.6 20.8 145 15-166 21-178 (906)
130 PF14559 TPR_19: Tetratricopep 95.2 0.066 1.4E-06 38.3 6.0 48 80-128 5-52 (68)
131 PRK02603 photosystem I assembl 95.1 1.1 2.3E-05 38.9 14.5 82 60-152 37-121 (172)
132 smart00299 CLH Clathrin heavy 95.1 1.6 3.6E-05 36.2 15.7 126 26-183 10-136 (140)
133 KOG3060 Uncharacterized conser 95.1 2.7 5.8E-05 38.6 18.4 159 35-208 24-188 (289)
134 PLN03088 SGT1, suppressor of 95.1 0.29 6.3E-06 48.1 11.8 95 81-181 17-112 (356)
135 PRK10153 DNA-binding transcrip 95.1 1.7 3.7E-05 44.9 17.8 149 19-175 332-489 (517)
136 PF03704 BTAD: Bacterial trans 95.0 0.16 3.4E-06 42.8 8.6 69 140-209 65-138 (146)
137 PF03704 BTAD: Bacterial trans 95.0 0.13 2.7E-06 43.4 7.9 72 102-175 63-139 (146)
138 PF04840 Vps16_C: Vps16, C-ter 94.9 1.1 2.3E-05 43.2 14.9 96 81-197 192-287 (319)
139 PF13929 mRNA_stabil: mRNA sta 94.9 2.2 4.8E-05 40.0 16.0 167 51-217 105-288 (292)
140 PF13170 DUF4003: Protein of u 94.8 1.2 2.6E-05 42.4 14.8 135 39-178 78-223 (297)
141 PLN03088 SGT1, suppressor of 94.8 0.63 1.4E-05 45.7 13.4 103 109-217 10-113 (356)
142 CHL00033 ycf3 photosystem I as 94.7 1.1 2.3E-05 38.7 13.4 93 25-126 37-138 (168)
143 PF12688 TPR_5: Tetratrico pep 94.7 0.92 2E-05 36.9 11.9 104 32-149 10-118 (120)
144 PRK10153 DNA-binding transcrip 94.7 3 6.5E-05 43.1 18.5 151 52-212 331-491 (517)
145 CHL00033 ycf3 photosystem I as 94.6 0.62 1.3E-05 40.2 11.6 48 81-128 50-99 (168)
146 KOG0985 Vesicle coat protein c 94.3 9.5 0.00021 41.8 20.8 82 102-192 1105-1186(1666)
147 KOG1128 Uncharacterized conser 94.3 2 4.2E-05 45.0 15.7 180 27-238 402-582 (777)
148 KOG1915 Cell cycle control pro 94.3 4.4 9.6E-05 40.5 17.3 80 81-165 156-235 (677)
149 PRK15363 pathogenicity island 94.0 2.4 5.3E-05 36.0 13.2 92 106-201 40-132 (157)
150 KOG2047 mRNA splicing factor [ 93.9 4.7 0.0001 41.8 17.1 173 31-217 110-291 (835)
151 PRK10866 outer membrane biogen 93.9 5.3 0.00012 36.9 18.2 165 22-199 32-239 (243)
152 PF13170 DUF4003: Protein of u 93.9 1.3 2.7E-05 42.3 12.7 131 81-213 77-223 (297)
153 PRK04841 transcriptional regul 93.8 11 0.00023 42.1 22.1 167 25-200 493-681 (903)
154 PF07035 Mic1: Colon cancer-as 93.7 4 8.7E-05 35.2 14.2 135 43-201 14-149 (167)
155 PF14938 SNAP: Soluble NSF att 93.6 2.2 4.7E-05 40.4 14.0 26 103-128 157-182 (282)
156 KOG3785 Uncharacterized conser 93.6 2.4 5.2E-05 40.7 13.5 154 38-210 338-497 (557)
157 KOG1915 Cell cycle control pro 93.6 2.1 4.5E-05 42.7 13.5 158 35-201 378-536 (677)
158 COG3063 PilF Tfp pilus assembl 93.5 5.6 0.00012 36.0 19.2 176 19-210 63-243 (250)
159 PRK10803 tol-pal system protei 93.5 1.9 4.1E-05 40.3 13.1 103 101-208 143-251 (263)
160 PF13432 TPR_16: Tetratricopep 93.4 0.49 1.1E-05 33.4 7.1 53 145-199 5-58 (65)
161 KOG2376 Signal recognition par 93.3 11 0.00024 38.7 20.6 231 24-315 13-255 (652)
162 KOG0495 HAT repeat protein [RN 93.3 12 0.00026 39.1 21.6 162 25-201 518-680 (913)
163 KOG1173 Anaphase-promoting com 93.2 7.5 0.00016 39.7 17.1 133 81-217 395-532 (611)
164 COG5107 RNA14 Pre-mRNA 3'-end 93.2 1.8 3.9E-05 42.8 12.4 143 25-183 399-546 (660)
165 KOG1173 Anaphase-promoting com 92.9 2.8 6E-05 42.7 13.5 99 81-183 429-533 (611)
166 PF14938 SNAP: Soluble NSF att 92.9 6.1 0.00013 37.3 15.8 197 25-239 37-260 (282)
167 KOG4340 Uncharacterized conser 92.7 7.6 0.00017 36.5 15.1 170 21-204 8-210 (459)
168 PF04840 Vps16_C: Vps16, C-ter 92.7 7.6 0.00017 37.4 16.2 86 101-197 177-262 (319)
169 PF12688 TPR_5: Tetratrico pep 92.6 2.1 4.6E-05 34.7 10.5 95 81-182 16-116 (120)
170 PRK04841 transcriptional regul 92.4 5.2 0.00011 44.5 16.9 162 31-200 460-640 (903)
171 PF08631 SPO22: Meiosis protei 92.3 10 0.00022 35.8 20.2 172 34-208 4-193 (278)
172 PF13432 TPR_16: Tetratricopep 92.1 0.64 1.4E-05 32.8 6.3 54 109-165 5-59 (65)
173 PF13371 TPR_9: Tetratricopept 91.9 1.5 3.3E-05 31.5 8.2 54 146-200 4-57 (73)
174 KOG4162 Predicted calmodulin-b 91.8 12 0.00025 39.7 16.9 109 90-200 312-422 (799)
175 KOG2047 mRNA splicing factor [ 91.6 20 0.00042 37.5 25.3 174 22-203 244-508 (835)
176 smart00299 CLH Clathrin heavy 91.5 7 0.00015 32.3 16.0 125 61-217 10-135 (140)
177 KOG2053 Mitochondrial inherita 91.4 24 0.00052 38.2 20.0 88 21-119 39-128 (932)
178 KOG1125 TPR repeat-containing 91.3 11 0.00025 38.4 15.8 143 38-192 409-562 (579)
179 PLN03098 LPA1 LOW PSII ACCUMUL 91.2 3 6.5E-05 41.6 11.7 65 99-166 73-141 (453)
180 PF13424 TPR_12: Tetratricopep 90.8 0.97 2.1E-05 33.2 6.2 60 103-162 7-71 (78)
181 KOG0985 Vesicle coat protein c 90.2 5.5 0.00012 43.5 13.0 89 20-124 1101-1189(1666)
182 PRK14720 transcript cleavage f 90.1 9.6 0.00021 41.9 15.2 118 81-217 131-267 (906)
183 PF13414 TPR_11: TPR repeat; P 90.0 1.3 2.8E-05 31.5 6.2 57 103-162 5-63 (69)
184 PRK15363 pathogenicity island 90.0 4.1 8.9E-05 34.7 9.9 83 81-166 50-132 (157)
185 KOG4570 Uncharacterized conser 89.9 1.4 3.1E-05 41.5 7.6 94 25-128 66-162 (418)
186 KOG3616 Selective LIM binding 89.9 3.5 7.5E-05 43.3 10.9 104 78-195 744-847 (1636)
187 KOG0495 HAT repeat protein [RN 89.7 29 0.00063 36.4 24.8 195 25-238 586-782 (913)
188 PRK10803 tol-pal system protei 89.7 6.5 0.00014 36.8 12.1 98 58-166 143-246 (263)
189 PF13371 TPR_9: Tetratricopept 89.6 1.6 3.4E-05 31.5 6.4 57 109-167 3-59 (73)
190 PF13414 TPR_11: TPR repeat; P 89.5 1.6 3.4E-05 31.1 6.3 63 137-200 3-66 (69)
191 PF13424 TPR_12: Tetratricopep 89.3 1.4 3E-05 32.3 6.0 64 22-93 2-73 (78)
192 PF04053 Coatomer_WDAD: Coatom 89.2 9.3 0.0002 38.7 13.6 82 99-196 345-426 (443)
193 KOG4570 Uncharacterized conser 89.1 2 4.3E-05 40.5 7.9 105 95-202 58-165 (418)
194 PF09205 DUF1955: Domain of un 89.0 7.3 0.00016 32.1 10.1 18 34-51 13-30 (161)
195 COG3629 DnrI DNA-binding trans 88.6 4.5 9.8E-05 38.0 10.1 80 137-217 153-237 (280)
196 KOG1156 N-terminal acetyltrans 88.5 34 0.00074 35.7 20.1 167 28-201 224-434 (700)
197 KOG3617 WD40 and TPR repeat-co 88.3 26 0.00057 37.7 16.0 71 80-163 814-884 (1416)
198 PF10300 DUF3808: Protein of u 87.8 29 0.00062 35.5 16.3 166 27-200 192-375 (468)
199 KOG2796 Uncharacterized conser 87.7 24 0.00051 32.8 15.8 128 81-214 192-326 (366)
200 KOG2796 Uncharacterized conser 87.5 14 0.00031 34.2 12.1 143 26-182 180-329 (366)
201 KOG2053 Mitochondrial inherita 87.1 16 0.00034 39.5 13.8 137 34-184 20-156 (932)
202 COG3629 DnrI DNA-binding trans 86.9 6.3 0.00014 37.0 9.9 78 102-181 154-236 (280)
203 KOG2376 Signal recognition par 86.8 41 0.0009 34.8 19.8 95 139-237 341-445 (652)
204 PF13929 mRNA_stabil: mRNA sta 86.7 29 0.00062 32.7 14.0 136 38-180 143-286 (292)
205 KOG0553 TPR repeat-containing 86.0 8.7 0.00019 36.1 10.2 115 84-217 76-192 (304)
206 KOG3617 WD40 and TPR repeat-co 85.8 9.9 0.00021 40.7 11.4 145 25-197 728-883 (1416)
207 KOG1538 Uncharacterized conser 85.6 51 0.0011 34.6 17.0 31 283-313 816-846 (1081)
208 PF13281 DUF4071: Domain of un 85.5 39 0.00085 33.2 16.7 78 106-184 146-229 (374)
209 KOG0553 TPR repeat-containing 84.4 14 0.00031 34.7 10.9 101 75-181 90-191 (304)
210 PLN03098 LPA1 LOW PSII ACCUMUL 84.0 21 0.00045 35.9 12.4 61 25-95 77-141 (453)
211 KOG1538 Uncharacterized conser 83.7 16 0.00035 38.0 11.6 88 102-201 748-846 (1081)
212 PLN02789 farnesyltranstransfer 81.6 52 0.0011 31.7 20.4 140 25-179 39-183 (320)
213 KOG3060 Uncharacterized conser 81.4 45 0.00098 30.9 19.5 167 20-201 47-220 (289)
214 PF10602 RPN7: 26S proteasome 80.9 30 0.00064 30.2 11.2 48 25-72 38-87 (177)
215 COG4235 Cytochrome c biogenesi 80.9 40 0.00086 31.8 12.4 109 25-146 158-269 (287)
216 PF10602 RPN7: 26S proteasome 80.6 18 0.00039 31.5 9.7 96 102-200 37-141 (177)
217 PLN02789 farnesyltranstransfer 80.5 57 0.0012 31.5 18.9 118 81-202 52-172 (320)
218 KOG1585 Protein required for f 80.5 26 0.00056 32.2 10.5 114 81-195 125-250 (308)
219 PF14626 RNase_Zc3h12a_2: Zc3h 80.2 7.3 0.00016 31.1 6.2 84 339-424 8-97 (122)
220 KOG2280 Vacuolar assembly/sort 80.0 22 0.00048 37.7 11.3 97 81-197 699-795 (829)
221 PF04184 ST7: ST7 protein; In 79.2 19 0.00041 36.5 10.2 50 113-162 271-320 (539)
222 PF13281 DUF4071: Domain of un 79.1 69 0.0015 31.6 19.6 168 25-201 144-334 (374)
223 PF13176 TPR_7: Tetratricopept 78.8 4 8.6E-05 25.0 3.7 23 104-126 2-24 (36)
224 PF13176 TPR_7: Tetratricopept 78.4 4.5 9.7E-05 24.8 3.8 23 140-162 2-24 (36)
225 PF05991 NYN_YacP: YacP-like N 78.3 7.3 0.00016 33.6 6.4 39 387-425 67-111 (166)
226 TIGR02508 type_III_yscG type I 78.3 22 0.00047 27.8 8.1 50 147-202 49-98 (115)
227 PRK11906 transcriptional regul 77.7 84 0.0018 31.8 15.4 165 25-196 253-431 (458)
228 PF13512 TPR_18: Tetratricopep 77.2 26 0.00055 29.4 9.0 83 102-185 12-95 (142)
229 PF10300 DUF3808: Protein of u 76.5 29 0.00063 35.5 11.2 128 25-164 231-374 (468)
230 COG4700 Uncharacterized protei 76.3 55 0.0012 28.9 14.1 157 27-198 60-219 (251)
231 KOG1156 N-terminal acetyltrans 76.3 73 0.0016 33.4 13.6 131 55-199 366-509 (700)
232 COG1729 Uncharacterized protei 76.3 52 0.0011 30.6 11.6 103 101-208 142-249 (262)
233 PF07079 DUF1347: Protein of u 76.1 91 0.002 31.4 13.8 133 80-217 20-177 (549)
234 COG4105 ComL DNA uptake lipopr 74.3 69 0.0015 29.6 11.7 31 294-324 177-207 (254)
235 PF13762 MNE1: Mitochondrial s 73.7 38 0.00082 28.5 9.2 98 87-185 23-128 (145)
236 KOG1127 TPR repeat-containing 73.5 67 0.0015 35.5 12.9 84 77-165 573-658 (1238)
237 TIGR02561 HrpB1_HrpK type III 73.4 55 0.0012 27.6 10.7 72 81-158 25-97 (153)
238 KOG0548 Molecular co-chaperone 73.4 72 0.0016 32.6 12.5 47 147-194 368-414 (539)
239 PF04053 Coatomer_WDAD: Coatom 73.3 34 0.00073 34.7 10.6 132 33-202 271-403 (443)
240 PF07079 DUF1347: Protein of u 73.3 69 0.0015 32.2 12.1 138 34-184 17-179 (549)
241 PF07035 Mic1: Colon cancer-as 72.7 62 0.0014 27.9 15.0 126 18-166 23-149 (167)
242 COG4455 ImpE Protein of avirul 71.7 32 0.00069 31.1 8.6 77 103-181 3-81 (273)
243 PF11848 DUF3368: Domain of un 71.3 15 0.00032 24.4 5.1 32 184-215 14-45 (48)
244 COG1569 Predicted nucleic acid 71.3 12 0.00026 30.9 5.5 42 378-419 64-113 (142)
245 PRK10866 outer membrane biogen 71.0 68 0.0015 29.5 11.4 74 107-183 38-115 (243)
246 KOG0543 FKBP-type peptidyl-pro 70.6 72 0.0016 31.5 11.5 95 101-199 257-353 (397)
247 PF11848 DUF3368: Domain of un 70.5 16 0.00034 24.2 5.1 36 31-66 10-45 (48)
248 PF00637 Clathrin: Region in C 70.3 0.87 1.9E-05 38.0 -1.3 45 81-125 22-66 (143)
249 cd00923 Cyt_c_Oxidase_Va Cytoc 70.1 35 0.00076 26.5 7.4 62 155-217 25-86 (103)
250 KOG1127 TPR repeat-containing 69.9 65 0.0014 35.6 11.9 114 81-198 507-656 (1238)
251 PF13428 TPR_14: Tetratricopep 69.9 10 0.00022 24.3 4.1 26 103-128 3-28 (44)
252 KOG1174 Anaphase-promoting com 69.4 1.3E+02 0.0027 30.1 17.0 48 146-195 343-391 (564)
253 KOG3040 Predicted sugar phosph 68.8 5.1 0.00011 35.6 3.0 78 277-367 65-149 (262)
254 PF02284 COX5A: Cytochrome c o 68.6 20 0.00043 28.1 5.9 60 85-146 29-88 (108)
255 PF09613 HrpB1_HrpK: Bacterial 68.6 75 0.0016 27.2 12.1 74 81-160 25-99 (160)
256 COG4235 Cytochrome c biogenesi 68.6 93 0.002 29.4 11.5 99 99-201 154-256 (287)
257 PRK15331 chaperone protein Sic 68.6 39 0.00084 29.1 8.3 88 111-201 47-134 (165)
258 cd00923 Cyt_c_Oxidase_Va Cytoc 68.0 25 0.00054 27.3 6.3 43 86-128 27-69 (103)
259 PF00637 Clathrin: Region in C 67.8 2.6 5.7E-05 35.0 1.1 88 106-201 12-99 (143)
260 PF10366 Vps39_1: Vacuolar sor 67.5 24 0.00052 28.0 6.5 27 139-165 41-67 (108)
261 PF13762 MNE1: Mitochondrial s 67.5 74 0.0016 26.7 12.8 93 124-217 25-125 (145)
262 PF13374 TPR_10: Tetratricopep 67.4 13 0.00029 22.8 4.3 27 102-128 3-29 (42)
263 TIGR00305 probable toxin-antit 67.4 4.4 9.6E-05 32.4 2.3 22 397-418 86-108 (114)
264 KOG1125 TPR repeat-containing 67.4 1.6E+02 0.0035 30.5 17.6 109 116-238 409-520 (579)
265 PF09613 HrpB1_HrpK: Bacterial 67.1 81 0.0018 27.0 11.8 93 109-206 18-111 (160)
266 PF11207 DUF2989: Protein of u 67.1 58 0.0013 29.0 9.3 75 82-157 122-198 (203)
267 PF13428 TPR_14: Tetratricopep 66.7 22 0.00048 22.6 5.2 27 140-166 4-30 (44)
268 PF13374 TPR_10: Tetratricopep 66.7 11 0.00025 23.2 3.8 27 138-164 3-29 (42)
269 PF04184 ST7: ST7 protein; In 66.1 64 0.0014 32.9 10.4 76 142-217 264-341 (539)
270 KOG2297 Predicted translation 65.7 1.1E+02 0.0025 29.1 11.2 48 18-72 160-210 (412)
271 PF11663 Toxin_YhaV: Toxin wit 65.7 6.6 0.00014 32.3 2.9 34 147-182 105-138 (140)
272 KOG0624 dsRNA-activated protei 65.3 1.4E+02 0.003 29.1 20.4 129 32-173 115-257 (504)
273 PF13525 YfiO: Outer membrane 64.8 1E+02 0.0022 27.3 15.6 148 25-201 8-170 (203)
274 PRK10564 maltose regulon perip 64.0 19 0.00042 34.0 6.1 45 17-61 249-295 (303)
275 TIGR03504 FimV_Cterm FimV C-te 63.3 17 0.00036 23.7 4.0 22 144-165 6-27 (44)
276 PF12796 Ank_2: Ankyrin repeat 63.2 31 0.00066 25.6 6.3 10 108-117 30-39 (89)
277 KOG1174 Anaphase-promoting com 63.2 1.7E+02 0.0036 29.3 14.4 45 81-126 349-393 (564)
278 PF11663 Toxin_YhaV: Toxin wit 63.0 6.9 0.00015 32.2 2.6 34 34-69 106-139 (140)
279 PF02284 COX5A: Cytochrome c o 62.5 75 0.0016 25.0 9.3 71 146-217 17-89 (108)
280 KOG0548 Molecular co-chaperone 61.8 63 0.0014 33.0 9.5 99 79-182 15-114 (539)
281 COG4649 Uncharacterized protei 61.7 1.1E+02 0.0024 26.7 11.7 141 58-208 59-203 (221)
282 TIGR03504 FimV_Cterm FimV C-te 60.7 20 0.00044 23.3 4.0 26 178-203 5-30 (44)
283 KOG4555 TPR repeat-containing 60.2 99 0.0021 25.7 10.0 90 110-202 52-145 (175)
284 PF09205 DUF1955: Domain of un 60.0 1E+02 0.0022 25.7 13.3 119 81-203 17-151 (161)
285 COG1729 Uncharacterized protei 60.0 1.5E+02 0.0032 27.7 11.5 60 138-200 143-206 (262)
286 PF11207 DUF2989: Protein of u 59.5 75 0.0016 28.3 8.6 78 112-192 118-198 (203)
287 PF07163 Pex26: Pex26 protein; 59.1 97 0.0021 29.1 9.5 90 104-195 86-181 (309)
288 KOG2041 WD40 repeat protein [G 55.9 2.1E+02 0.0045 30.7 12.1 82 27-119 740-827 (1189)
289 PHA02875 ankyrin repeat protei 55.1 62 0.0014 32.2 8.7 12 29-40 38-49 (413)
290 PHA02875 ankyrin repeat protei 54.8 69 0.0015 31.8 8.9 144 30-195 6-155 (413)
291 PF11846 DUF3366: Domain of un 54.4 45 0.00097 29.3 6.7 31 169-199 141-171 (193)
292 PF07721 TPR_4: Tetratricopept 54.3 22 0.00049 19.8 3.1 21 105-125 5-25 (26)
293 PF13470 PIN_3: PIN domain 53.4 12 0.00026 29.9 2.6 23 397-419 95-118 (119)
294 PF11838 ERAP1_C: ERAP1-like C 51.7 2.2E+02 0.0047 27.0 12.2 110 81-196 145-261 (324)
295 PF00515 TPR_1: Tetratricopept 51.4 30 0.00065 20.3 3.6 26 103-128 3-28 (34)
296 KOG2041 WD40 repeat protein [G 51.4 3.1E+02 0.0067 29.5 12.5 12 81-92 749-760 (1189)
297 KOG3165 Predicted nucleic-acid 51.0 56 0.0012 27.7 6.1 31 389-419 128-159 (195)
298 PF11846 DUF3366: Domain of un 51.0 69 0.0015 28.1 7.3 61 106-166 113-173 (193)
299 PF12796 Ank_2: Ankyrin repeat 50.8 38 0.00081 25.1 4.9 83 31-137 2-87 (89)
300 PF13512 TPR_18: Tetratricopep 49.6 1.6E+02 0.0034 24.7 11.9 81 25-114 13-95 (142)
301 COG3898 Uncharacterized membra 49.3 2.8E+02 0.0061 27.6 16.5 130 81-215 169-304 (531)
302 KOG1920 IkappaB kinase complex 48.8 1.9E+02 0.0041 32.8 11.2 78 106-195 970-1049(1265)
303 PRK11906 transcriptional regul 47.8 3E+02 0.0066 27.9 11.7 113 37-164 318-434 (458)
304 KOG2297 Predicted translation 47.6 2.6E+02 0.0057 26.8 15.8 19 283-301 320-338 (412)
305 COG0457 NrfG FOG: TPR repeat [ 47.6 1.7E+02 0.0037 24.6 19.9 52 148-199 178-229 (291)
306 PRK14956 DNA polymerase III su 46.5 3.5E+02 0.0075 27.8 13.5 99 86-209 186-285 (484)
307 PRK10564 maltose regulon perip 46.0 40 0.00087 32.0 5.0 30 140-169 260-289 (303)
308 PF12926 MOZART2: Mitotic-spin 46.0 1.3E+02 0.0028 22.8 7.9 61 25-95 12-72 (88)
309 KOG0687 26S proteasome regulat 45.8 2.8E+02 0.0061 26.8 10.4 94 25-128 106-208 (393)
310 KOG0276 Vesicle coat complex C 45.5 2.6E+02 0.0056 29.4 10.8 95 81-197 652-746 (794)
311 KOG2610 Uncharacterized conser 44.6 3.1E+02 0.0067 26.7 12.1 90 106-197 180-272 (491)
312 PF04097 Nic96: Nup93/Nic96; 44.3 4.2E+02 0.0091 28.2 13.5 44 25-70 114-157 (613)
313 COG3118 Thioredoxin domain-con 44.0 2.9E+02 0.0063 26.3 13.3 132 81-217 149-282 (304)
314 PF13431 TPR_17: Tetratricopep 43.5 34 0.00073 20.6 2.9 22 100-121 12-33 (34)
315 PF06844 DUF1244: Protein of u 43.1 7.9 0.00017 27.3 -0.0 35 403-441 20-54 (68)
316 KOG0543 FKBP-type peptidyl-pro 42.8 2.9E+02 0.0063 27.4 10.5 105 110-217 217-334 (397)
317 KOG0624 dsRNA-activated protei 41.0 3.6E+02 0.0077 26.4 16.8 163 25-200 157-335 (504)
318 KOG2280 Vacuolar assembly/sort 39.6 1.5E+02 0.0032 31.9 8.3 92 96-198 679-770 (829)
319 PRK15331 chaperone protein Sic 39.3 2.5E+02 0.0054 24.2 13.3 82 81-165 52-133 (165)
320 PF10579 Rapsyn_N: Rapsyn N-te 39.3 65 0.0014 24.0 4.2 46 113-158 18-64 (80)
321 PF09454 Vps23_core: Vps23 cor 38.5 72 0.0016 22.7 4.3 52 54-114 4-55 (65)
322 PF02847 MA3: MA3 domain; Int 37.7 1.8E+02 0.0038 22.8 7.1 63 105-170 6-70 (113)
323 COG5108 RPO41 Mitochondrial DN 37.6 2E+02 0.0043 30.6 8.8 79 27-110 32-112 (1117)
324 COG3947 Response regulator con 37.4 1.6E+02 0.0035 28.0 7.4 126 81-210 226-356 (361)
325 COG3898 Uncharacterized membra 37.0 4.4E+02 0.0095 26.3 14.6 181 19-215 182-370 (531)
326 PF14689 SPOB_a: Sensor_kinase 36.9 48 0.001 23.2 3.2 46 81-128 5-50 (62)
327 KOG0991 Replication factor C, 36.9 3.4E+02 0.0075 25.1 12.5 92 87-182 180-282 (333)
328 PF14689 SPOB_a: Sensor_kinase 36.8 55 0.0012 22.9 3.5 47 116-165 5-51 (62)
329 COG5108 RPO41 Mitochondrial DN 36.4 2.1E+02 0.0046 30.4 8.8 91 106-200 33-131 (1117)
330 KOG2114 Vacuolar assembly/sort 36.3 6.1E+02 0.013 27.9 12.2 105 81-198 412-516 (933)
331 TIGR02561 HrpB1_HrpK type III 36.0 2.7E+02 0.0059 23.6 11.0 52 112-168 21-75 (153)
332 KOG4648 Uncharacterized conser 35.9 1.4E+02 0.0031 28.9 7.0 47 111-160 107-154 (536)
333 PF13525 YfiO: Outer membrane 35.4 3.1E+02 0.0068 24.1 12.5 48 81-128 20-69 (203)
334 PF13934 ELYS: Nuclear pore co 35.4 3E+02 0.0066 25.0 9.1 89 81-184 93-184 (226)
335 TIGR00028 Mtu_PIN_fam Mycobact 35.2 1.3E+02 0.0028 24.4 6.2 27 393-419 100-126 (142)
336 PHA02874 ankyrin repeat protei 34.2 2E+02 0.0044 28.8 8.6 69 130-206 112-184 (434)
337 PF13181 TPR_8: Tetratricopept 34.1 96 0.0021 17.8 4.1 27 25-51 3-29 (34)
338 COG4956 Integral membrane prot 33.7 1.6E+02 0.0034 28.2 6.7 92 316-419 166-264 (356)
339 smart00638 LPD_N Lipoprotein N 33.5 5.8E+02 0.013 26.7 17.5 116 56-186 308-432 (574)
340 COG2178 Predicted RNA-binding 33.5 3.5E+02 0.0075 24.1 10.4 109 82-200 19-149 (204)
341 COG4649 Uncharacterized protei 32.6 3.5E+02 0.0075 23.8 15.5 97 102-201 60-161 (221)
342 KOG1550 Extracellular protein 32.6 6E+02 0.013 26.6 15.2 163 33-206 259-431 (552)
343 KOG2114 Vacuolar assembly/sort 32.5 3.3E+02 0.0072 29.8 9.6 153 25-199 285-458 (933)
344 COG3947 Response regulator con 32.1 3E+02 0.0066 26.2 8.3 48 174-224 281-328 (361)
345 PF12926 MOZART2: Mitotic-spin 32.0 2.3E+02 0.0049 21.5 7.3 43 158-200 29-71 (88)
346 smart00670 PINc Large family o 31.8 49 0.0011 25.7 2.9 24 396-419 83-107 (111)
347 PF10366 Vps39_1: Vacuolar sor 31.8 72 0.0016 25.3 3.8 27 25-51 41-67 (108)
348 COG0457 NrfG FOG: TPR repeat [ 31.1 3.1E+02 0.0068 22.8 19.8 164 25-201 97-265 (291)
349 TIGR02508 type_III_yscG type I 30.9 2.7E+02 0.0058 22.0 6.9 79 81-167 20-98 (115)
350 KOG4077 Cytochrome c oxidase, 30.9 2.2E+02 0.0047 23.5 6.3 42 87-128 70-111 (149)
351 PF02847 MA3: MA3 domain; Int 30.6 1.2E+02 0.0026 23.7 5.1 66 140-207 5-72 (113)
352 PF13174 TPR_6: Tetratricopept 30.6 1.1E+02 0.0023 17.3 4.4 23 293-315 9-31 (33)
353 KOG4555 TPR repeat-containing 30.3 3.2E+02 0.007 22.8 10.1 86 81-167 58-145 (175)
354 PF02259 FAT: FAT domain; Int 29.6 5E+02 0.011 24.7 16.2 65 136-200 145-212 (352)
355 KOG1147 Glutamyl-tRNA syntheta 29.5 50 0.0011 33.8 3.0 26 45-70 255-285 (712)
356 PF10130 PIN_2: PIN domain; I 29.3 44 0.00094 27.7 2.3 26 394-419 88-113 (133)
357 COG0735 Fur Fe2+/Zn2+ uptake r 28.8 2.4E+02 0.0053 23.5 6.8 59 158-217 7-65 (145)
358 COG4455 ImpE Protein of avirul 28.7 4.4E+02 0.0094 24.1 8.4 77 139-216 3-81 (273)
359 PF08311 Mad3_BUB1_I: Mad3/BUB 28.6 1.7E+02 0.0036 23.8 5.6 42 84-125 81-123 (126)
360 cd00280 TRFH Telomeric Repeat 28.2 3.7E+02 0.0079 23.8 7.6 21 108-128 118-138 (200)
361 PF10579 Rapsyn_N: Rapsyn N-te 27.8 2E+02 0.0044 21.4 5.2 44 81-124 21-66 (80)
362 KOG4162 Predicted calmodulin-b 27.7 8.2E+02 0.018 26.6 18.2 66 54-128 319-384 (799)
363 PF08631 SPO22: Meiosis protei 27.4 5.1E+02 0.011 24.1 20.5 184 25-217 38-249 (278)
364 COG4105 ComL DNA uptake lipopr 27.4 5.1E+02 0.011 24.1 19.9 172 19-200 31-232 (254)
365 COG4003 Uncharacterized protei 27.0 2E+02 0.0043 21.5 5.0 36 177-213 36-71 (98)
366 KOG4077 Cytochrome c oxidase, 26.9 3.6E+02 0.0079 22.2 7.0 43 159-201 71-113 (149)
367 PF08870 DUF1832: Domain of un 26.8 3.3E+02 0.0072 21.7 7.0 88 84-186 7-96 (113)
368 KOG0159 Cytochrome P450 CYP11/ 26.7 6.6E+02 0.014 26.0 10.4 111 59-185 269-385 (519)
369 PHA03100 ankyrin repeat protei 26.7 1.9E+02 0.0041 29.3 7.0 77 86-171 121-203 (480)
370 PHA03100 ankyrin repeat protei 26.6 2.6E+02 0.0055 28.3 7.9 151 27-206 36-203 (480)
371 cd08819 CARD_MDA5_2 Caspase ac 26.6 2.9E+02 0.0063 21.0 7.5 38 113-156 48-85 (88)
372 PRK14136 recX recombination re 26.5 5.8E+02 0.013 24.4 15.8 86 19-136 157-243 (309)
373 PF07163 Pex26: Pex26 protein; 26.3 5.6E+02 0.012 24.3 10.2 57 103-160 120-181 (309)
374 PF09477 Type_III_YscG: Bacter 26.0 3.4E+02 0.0074 21.6 7.5 79 81-167 21-99 (116)
375 PF09477 Type_III_YscG: Bacter 26.0 3.4E+02 0.0074 21.6 8.3 79 116-202 21-99 (116)
376 PRK07003 DNA polymerase III su 25.7 8.7E+02 0.019 26.8 11.5 36 171-207 245-280 (830)
377 PRK11639 zinc uptake transcrip 25.5 4.1E+02 0.009 22.8 7.8 21 254-274 130-150 (169)
378 COG1412 Uncharacterized protei 25.4 72 0.0016 26.5 2.9 24 396-419 83-107 (136)
379 PRK09462 fur ferric uptake reg 25.4 3.2E+02 0.0068 22.8 7.0 60 92-153 8-68 (148)
380 PRK07003 DNA polymerase III su 25.3 9.5E+02 0.021 26.5 11.8 86 82-171 180-279 (830)
381 PRK15180 Vi polysaccharide bio 25.2 6.7E+02 0.015 25.7 9.8 110 85-199 309-418 (831)
382 PF14669 Asp_Glu_race_2: Putat 25.2 1.4E+02 0.0031 26.4 4.7 56 106-162 137-206 (233)
383 PF09797 NatB_MDM20: N-acetylt 25.0 4.3E+02 0.0093 25.8 8.9 126 62-196 184-310 (365)
384 PRK08691 DNA polymerase III su 24.6 8.1E+02 0.018 26.6 11.0 95 116-213 179-286 (709)
385 TIGR03586 PseI pseudaminic aci 24.6 3E+02 0.0065 26.7 7.4 92 339-438 145-248 (327)
386 KOG1550 Extracellular protein 24.6 8.2E+02 0.018 25.6 13.6 152 39-202 228-394 (552)
387 PHA02798 ankyrin-like protein; 24.4 3.1E+02 0.0067 28.0 8.0 118 85-207 88-214 (489)
388 PF11817 Foie-gras_1: Foie gra 24.2 2.6E+02 0.0056 25.7 6.7 58 142-199 183-245 (247)
389 COG4700 Uncharacterized protei 24.1 5.2E+02 0.011 23.1 18.7 107 97-208 85-194 (251)
390 PF09454 Vps23_core: Vps23 cor 23.9 1.5E+02 0.0033 21.0 3.9 50 134-184 5-54 (65)
391 PRK11639 zinc uptake transcrip 23.7 3.4E+02 0.0075 23.3 7.0 61 92-154 17-77 (169)
392 PF07719 TPR_2: Tetratricopept 23.5 1.5E+02 0.0034 16.8 4.5 27 174-200 3-29 (34)
393 cd08326 CARD_CASP9 Caspase act 23.5 3.2E+02 0.007 20.5 7.3 36 81-120 45-80 (84)
394 smart00028 TPR Tetratricopepti 23.4 1.3E+02 0.0028 15.8 3.7 26 103-128 3-28 (34)
395 PF07443 HARP: HepA-related pr 23.3 53 0.0012 22.5 1.4 34 115-149 6-39 (55)
396 PF02841 GBP_C: Guanylate-bind 23.3 3.9E+02 0.0084 25.4 7.9 66 93-162 21-87 (297)
397 KOG2659 LisH motif-containing 23.2 5.8E+02 0.012 23.3 9.5 97 97-197 22-128 (228)
398 PRK12356 glutaminase; Reviewed 23.1 6.9E+02 0.015 24.1 12.2 19 51-69 91-109 (319)
399 KOG0550 Molecular chaperone (D 23.1 2.6E+02 0.0055 28.0 6.4 102 81-201 241-350 (486)
400 KOG3072 Long chain fatty acid 22.8 4.1E+02 0.0088 25.0 7.5 82 277-367 66-153 (282)
401 KOG2063 Vacuolar assembly/sort 22.6 4.8E+02 0.01 29.0 9.0 119 25-150 506-639 (877)
402 PF11817 Foie-gras_1: Foie gra 22.6 6E+02 0.013 23.2 9.3 25 174-198 180-204 (247)
403 KOG4567 GTPase-activating prot 22.5 4E+02 0.0086 25.6 7.3 70 43-125 263-342 (370)
404 KOG0276 Vesicle coat complex C 22.0 9.7E+02 0.021 25.5 13.2 117 57-207 665-781 (794)
405 PF08542 Rep_fac_C: Replicatio 21.9 1.7E+02 0.0038 21.7 4.3 37 20-57 2-38 (89)
406 PRK09857 putative transposase; 21.9 5.6E+02 0.012 24.3 8.6 64 142-206 211-274 (292)
407 PF11768 DUF3312: Protein of u 21.8 3.4E+02 0.0074 28.2 7.3 95 104-201 411-507 (545)
408 smart00544 MA3 Domain in DAP-5 21.8 3.9E+02 0.0084 20.8 9.1 61 105-168 6-68 (113)
409 PF07218 RAP1: Rhoptry-associa 21.8 6.9E+02 0.015 26.0 9.2 68 110-184 587-661 (782)
410 COG0735 Fur Fe2+/Zn2+ uptake r 21.6 4.8E+02 0.01 21.7 7.3 65 88-154 8-72 (145)
411 PF03745 DUF309: Domain of unk 21.4 3E+02 0.0064 19.3 5.6 48 147-194 9-61 (62)
412 COG2405 Predicted nucleic acid 21.3 1.8E+02 0.0039 24.3 4.3 32 184-215 121-152 (157)
413 PF12813 XPG_I_2: XPG domain c 21.0 1.4E+02 0.003 27.6 4.2 41 380-423 9-52 (246)
414 KOG0414 Chromosome condensatio 20.9 9.4E+02 0.02 27.7 10.8 216 139-402 525-766 (1251)
415 KOG0687 26S proteasome regulat 20.7 7.9E+02 0.017 23.9 9.9 106 97-204 66-176 (393)
416 KOG3807 Predicted membrane pro 20.5 4.6E+02 0.0099 25.5 7.4 13 82-94 232-244 (556)
417 cd06604 GH31_glucosidase_II_Ma 20.4 3.8E+02 0.0081 26.0 7.3 78 339-419 22-111 (339)
418 PHA02743 Viral ankyrin protein 20.2 4.5E+02 0.0098 22.2 7.1 20 34-53 28-47 (166)
419 PF03102 NeuB: NeuB family; I 20.2 1.6E+02 0.0035 27.1 4.4 92 339-438 124-227 (241)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-41 Score=367.92 Aligned_cols=314 Identities=11% Similarity=0.109 Sum_probs=212.7
Q ss_pred ccccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q 013497 14 KKRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQM 92 (442)
Q Consensus 14 ~~~~~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M 92 (442)
+.++.|..|+. +||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|.+.| ++++|.++|++|
T Consensus 462 ~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--------~~eeAl~lf~~M 533 (1060)
T PLN03218 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--------QVAKAFGAYGIM 533 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--------CHHHHHHHHHHH
Confidence 34566777877 888888888888888888888888888888888888888888777777 788888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh--CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 93 LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNE--FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 93 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
.+.|+.||.+|||+||.+|++.|++++|.++|++|. . .|+.||.+||++||.+|++.|++++|.++|++|.+.|+.|
T Consensus 534 ~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 534 RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 888888888888888888888888888888888886 4 5778888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCcccc
Q 013497 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIG 250 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (442)
+..+||+||.+|++.|++++|.++|++|...|+.||..||++|+++| ++. +.+++|.+.+..... .|..
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~--~k~-------G~~eeA~~l~~eM~k-~G~~- 681 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA--GHA-------GDLDKAFEILQDARK-QGIK- 681 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhC-------CCHHHHHHHHHHHHH-cCCC-
Confidence 88888888888888888888888888888888888888888888888 665 334444433220000 0000
Q ss_pred ccceEEeeeccCCCCCCCcCCCcccccCCC-----HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccc
Q 013497 251 QGKWVVKRGSVDESGKCCSCGDQLACVDID-----DAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGAN 325 (442)
Q Consensus 251 ~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~-----~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~N 325 (442)
.+..+..+.+..+..|+...++++.++.. .+|..+|+.+|.+||+.|+.++|+++|++|...+..||.+.-..-
T Consensus 682 -pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 -LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 00001111222223333333333333211 125666666666666666666666666666666655554333222
Q ss_pred hhccccccCCCCcChhhHHHHHHHHHHh
Q 013497 326 IGLYQQNFTEGGFSVPQLDAVVKKLYER 353 (442)
Q Consensus 326 v~~~~~~~~~~~~~~~~~~~vv~~l~~~ 353 (442)
+..+.+. | .++.+..+++.+.+.
T Consensus 761 L~a~~k~---G--~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 761 LVASERK---D--DADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHC---C--CHHHHHHHHHHHHHc
Confidence 2222221 1 355666666666655
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.9e-41 Score=361.67 Aligned_cols=295 Identities=15% Similarity=0.172 Sum_probs=206.4
Q ss_pred ccccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q 013497 14 KKRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQM 92 (442)
Q Consensus 14 ~~~~~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M 92 (442)
++.+.|+.|+. |||+||++|++.|++++|+++|++|.+.|+.||..|||+||.+|.+.+ .+++|.++|++|
T Consensus 497 eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G--------~~deA~~lf~eM 568 (1060)
T PLN03218 497 EMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG--------AVDRAFDVLAEM 568 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 35567888998 999999999999999999999999999999999999999999888877 777777777777
Q ss_pred Hh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 93 LS--NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 93 ~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
.. .|+.||.+||++||.+|++.|++++|.++|++|. +.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~-e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 65 5677777777777777777777777777777777 67777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCcccc
Q 013497 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIG 250 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 250 (442)
|..||++||++|++.|++++|.++|++|.+.|+.|+..+|++||.+| ++.| .+++|...+...-. .+..
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay--~k~G-------~~eeA~~lf~eM~~-~g~~- 716 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC--SNAK-------NWKKALELYEDIKS-IKLR- 716 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhCC-------CHHHHHHHHHHHHH-cCCC-
Confidence 77777777777777777777777777777777777777777777777 5552 22333222210000 0000
Q ss_pred ccceEEeeeccCCCCCCCcCCCcccccCCC-----HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccc
Q 013497 251 QGKWVVKRGSVDESGKCCSCGDQLACVDID-----DAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGAN 325 (442)
Q Consensus 251 ~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~-----~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~N 325 (442)
.+....++.+..+..++...++++.++.+ .+|..+|+.+|.+|++.|+.++|.++|.+|.+.+..+|.++-..-
T Consensus 717 -PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 717 -PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 00000011111122222222222222110 028999999999999999999999999999999998887766655
Q ss_pred hhcc
Q 013497 326 IGLY 329 (442)
Q Consensus 326 v~~~ 329 (442)
++++
T Consensus 796 Iglc 799 (1060)
T PLN03218 796 TGLC 799 (1060)
T ss_pred HHHH
Confidence 5544
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-36 Score=328.99 Aligned_cols=311 Identities=11% Similarity=0.092 Sum_probs=245.3
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 21 NPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 21 ~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.|+. +||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|.+.+ .++.|.+++..|.+.|+.|
T Consensus 250 ~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g--------~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 250 RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG--------DERLGREMHGYVVKTGFAV 321 (857)
T ss_pred CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCcc
Confidence 4566 999999999999999999999999999999999999999999999888 8899999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
|+.+||+||.+|+++|++++|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 99999999999999999999999999988 4788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCccc--CCccc--------
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWH--GLGWI-------- 249 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~-------- 249 (442)
.+|++.|++++|.+++.+|.+.|+.|+..+|++|+++| ++.| .+++|.+.+..... ...|.
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y--~k~g-------~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY--SKCK-------CIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH--HHcC-------CHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 6653 23333322211000 00000
Q ss_pred ---------------------------------------------------c-ccceEEeeeccCCCCCCCcCCCccccc
Q 013497 250 ---------------------------------------------------G-QGKWVVKRGSVDESGKCCSCGDQLACV 277 (442)
Q Consensus 250 ---------------------------------------------------~-~~~w~v~~~~~~~~g~c~~c~~~l~~~ 277 (442)
| ..+-.+.++.++.+.+|+....+++.|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 0 001123344556677788777788777
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCC
Q 013497 278 DIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNK 357 (442)
Q Consensus 278 ~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~ 357 (442)
+..+.|..+|+++|.+|++.|+.++|+++|++|.+.+..||.+.=..-+..+... | .++++..+++.+.++. +.
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~---g--~v~ea~~~f~~M~~~~-gi 621 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS---G--MVTQGLEYFHSMEEKY-SI 621 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc---C--hHHHHHHHHHHHHHHh-CC
Confidence 6557899999999999999999999999999999999877766543322222222 2 3667777777777433 24
Q ss_pred cc
Q 013497 358 WP 359 (442)
Q Consensus 358 ~~ 359 (442)
.|
T Consensus 622 ~P 623 (857)
T PLN03077 622 TP 623 (857)
T ss_pred CC
Confidence 44
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=316.79 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=161.5
Q ss_pred cCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 17 KTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 17 ~~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
+.|..|+. +||+||++|++.|++++|.++|++|. .+|+++||+||.+|.+.| ++++|.++|++|.+.
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g--------~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG--------YSEEALCLYYEMRDS 319 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCC--------CHHHHHHHHHHHHHc
Confidence 34455555 55555555555555555555555554 234455555555555555 555555555555555
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 96 NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 96 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
|+.||.+||+++|++|++.|++++|.+++.+|. +.|+.||..+||+||.+|++.|++++|.++|++|.+ ||.+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeH
Confidence 555555555555555555555555555555555 555555555555555555555555555555555532 455555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceE
Q 013497 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 255 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~ 255 (442)
|+||.+|++.|+.++|.++|++|.+.|+.||..||++++++| ++. +.+++|...+...-...|+.. +..
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~--~~~-------g~~~~a~~~f~~m~~~~g~~p--~~~ 463 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC--RYS-------GLSEQGWEIFQSMSENHRIKP--RAM 463 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH--hcC-------CcHHHHHHHHHHHHHhcCCCC--Ccc
Confidence 555555555555555555555555555555555555555555 443 223333222210000000000 000
Q ss_pred EeeeccCCCCCCCcCCCcccccCCCH--HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC----CcceEEeccchhcc
Q 013497 256 VKRGSVDESGKCCSCGDQLACVDIDD--AETERFAQSVAALAMEREVKANFSEFQDWLEKNA----NYEAIVDGANIGLY 329 (442)
Q Consensus 256 v~~~~~~~~g~c~~c~~~l~~~~l~~--~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~----~~d~vIdg~Nv~~~ 329 (442)
.....++..+.++...++++.++-.+ ++..+|+++|.+|+.+|+.+.|...++++++-.+ .|..+++ .|
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~-----~y 538 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN-----LY 538 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHH-----HH
Confidence 01112222333333333333332111 2777899999999999999988888888865332 2222222 12
Q ss_pred ccccCCCCcChhhHHHHHHHHHHhcC
Q 013497 330 QQNFTEGGFSVPQLDAVVKKLYERSG 355 (442)
Q Consensus 330 ~~~~~~~~~~~~~~~~vv~~l~~~~~ 355 (442)
.+. | .++.+..+++.+++++-
T Consensus 539 ~~~---G--~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 539 NSS---G--RQAEAAKVVETLKRKGL 559 (697)
T ss_pred HhC---C--CHHHHHHHHHHHHHcCC
Confidence 222 3 48899999999998843
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=318.83 Aligned_cols=305 Identities=15% Similarity=0.091 Sum_probs=239.4
Q ss_pred cccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 15 KRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 15 ~~~~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
.++.|..|+. +||.+|++|++.|++++|.++|++|. .||.++||+||.+|.+.| ++++|.++|++|.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g--------~~~~A~~lf~~M~ 216 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAG--------NYREAFALFREMW 216 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCc--------CHHHHHHHHHHHH
Confidence 4566888888 99999999999999999999999997 478899999999888888 8999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 94 SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 94 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
+.|+.||..||+++|.+|++.|..+.+.+++..|. +.|+.||..+||+||.+|++.|++++|.++|++|.. +|.+
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~v 291 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL-KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTV 291 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH-HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChh
Confidence 99999999999999999999999999999999998 889999999999999999999999999999999864 5888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccc
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGK 253 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 253 (442)
+||+||.+|++.|+.++|.++|++|++.|+.||..||++++.+| ++.| .+++|.+.++... ..|. ..+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~--~~~g-------~~~~a~~i~~~m~-~~g~--~~d 359 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF--SRLA-------LLEHAKQAHAGLI-RTGF--PLD 359 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--Hhcc-------chHHHHHHHHHHH-HhCC--CCC
Confidence 99999999999999999999999999999999999999999999 7663 2333322211000 0000 013
Q ss_pred eEEeeeccCCCCCCCcCCCcccccCC-CHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccc
Q 013497 254 WVVKRGSVDESGKCCSCGDQLACVDI-DDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQN 332 (442)
Q Consensus 254 w~v~~~~~~~~g~c~~c~~~l~~~~l-~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~ 332 (442)
-.+.++.++.+++|+....+.+.|+- ..+|..+|+++|.+|++.|+.++|+++|++|.+.+..||.+.=..-+..+...
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 34456677778888888888888764 34789999999999999999999999999999988876654422212111111
Q ss_pred cCCCCcChhhHHHHHHHHHHh
Q 013497 333 FTEGGFSVPQLDAVVKKLYER 353 (442)
Q Consensus 333 ~~~~~~~~~~~~~vv~~l~~~ 353 (442)
| ..++...+++.+.+.
T Consensus 440 ---g--~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 440 ---G--LSEQGWEIFQSMSEN 455 (697)
T ss_pred ---C--cHHHHHHHHHHHHHh
Confidence 2 255555666666543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-35 Score=321.17 Aligned_cols=269 Identities=11% Similarity=0.091 Sum_probs=213.3
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 21 NPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 21 ~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.|+. +||++|.+|++.|++++|+++|++|...|+.||.+||+++|.+|...+ .++.+.+++.+|.+.|+.|
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~--------~~~~~~~~~~~~~~~g~~~ 220 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP--------DLARGREVHAHVVRFGFEL 220 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc--------chhhHHHHHHHHHHcCCCc
Confidence 4666 899999999999999999999999998899999999999999888777 7888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
|+.+||+||.+|+++|++++|.++|++|. .||.+|||+||.+|++.|+.++|+++|++|.+.|+.||..||+++|
T Consensus 221 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll 295 (857)
T PLN03077 221 DVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295 (857)
T ss_pred ccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Confidence 99999999999999999999999998888 4788889999999999999999999999998889999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeee
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRG 259 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~ 259 (442)
.+|++.|+.+.|.+++.+|.+.|+.||..+|++|+.+| ++. +.+++|...+.
T Consensus 296 ~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y--~k~-------g~~~~A~~vf~------------------- 347 (857)
T PLN03077 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY--LSL-------GSWGEAEKVFS------------------- 347 (857)
T ss_pred HHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH--Hhc-------CCHHHHHHHHh-------------------
Confidence 99999999999999999998889999999999999998 666 55666665543
Q ss_pred ccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcC
Q 013497 260 SVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFS 339 (442)
Q Consensus 260 ~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~ 339 (442)
.|. .+ |..+|+++|.+|++.|+.++|+++|++|.+.+..||.+.-..-+..+.+. | .
T Consensus 348 ~m~----~~--------------d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~---g--~ 404 (857)
T PLN03077 348 RME----TK--------------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL---G--D 404 (857)
T ss_pred hCC----CC--------------CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc---c--h
Confidence 221 12 56678888888888888888888888887777666654433333222211 1 2
Q ss_pred hhhHHHHHHHHHHh
Q 013497 340 VPQLDAVVKKLYER 353 (442)
Q Consensus 340 ~~~~~~vv~~l~~~ 353 (442)
++.+..+.+.+.+.
T Consensus 405 ~~~a~~l~~~~~~~ 418 (857)
T PLN03077 405 LDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555554
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.87 E-value=3.1e-23 Score=177.76 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=91.2
Q ss_pred ceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCCccEEEccCccccC-CCCChhhHHHHHHHHhcCeEEeCCCC
Q 013497 318 EAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRS-LWENPSHRNLVEEWNEKGVLYMTPHG 396 (442)
Q Consensus 318 d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (442)
-+||||+|||+++.+. ..|++.+|..+++++.++ |..+++|++..+... ....+++++.|++|.+++.+++||++
T Consensus 4 ~VVIDG~NVA~~~~~~--~~f~~~~i~~~v~~~~~r--G~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~ 79 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQ--KFFSVRGIQIAVEYFKSR--GHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSG 79 (155)
T ss_dssp -EEEEHHHHHHHHTTT--TSEEHHHHHHHHHHHHHT--T---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EE
T ss_pred EEEEeCHHHHhhcCCC--CCcCHHHHHHHHHHHHHc--CCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCC
Confidence 3799999999865441 238999999999999999 678888887666322 34567788899999999999999999
Q ss_pred CC--------ccHHHHHHHHhcCcEEEecCccccchhhccccchhhhhhhhcCC
Q 013497 397 SN--------DDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQT 442 (442)
Q Consensus 397 ~~--------DD~~~l~aa~~~~~~~vsnD~~rdh~~~~~~~~~f~~W~~~hq~ 442 (442)
++ ||||||++|.+.+++|||||+||||.+ ....|.+|.++|+|
T Consensus 80 ~~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i 130 (155)
T PF11977_consen 80 SNYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLI 130 (155)
T ss_dssp EETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE
T ss_pred CCCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeee
Confidence 87 999999999999999999999999999 56789999999975
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.55 E-value=1.8e-12 Score=128.96 Aligned_cols=235 Identities=10% Similarity=0.015 Sum_probs=162.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
++..+...+.+.|++++|..+++.+...+..++ ...+..|...+...| ++++|..+|+++.+.. +++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g--------~~~~A~~~~~~~l~~~-~~~~ 141 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG--------LLDRAEELFLQLVDEG-DFAE 141 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCC-cchH
Confidence 788888888999999999999998887543332 245666666777777 8899999999887652 3567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
.+++.++..+.+.|++++|.+.++.+. ..+-.+.. ..|..+...+.+.|+.++|..+|+++.+.. ..+...+..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 219 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASIL 219 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHH
Confidence 888899999999999999999998887 54322211 235567777888899999999998887653 224557777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEe
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVK 257 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~ 257 (442)
+...+.+.|+.++|.++|+++....-.....++..+...| ...| ..++|...+..
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~--~~~g-------~~~~A~~~l~~---------------- 274 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY--QALG-------DEAEGLEFLRR---------------- 274 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH--HHcC-------CHHHHHHHHHH----------------
Confidence 8888888999999999998887653222235667777777 5553 33333333220
Q ss_pred eeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 258 RGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 258 ~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
.+.. -| +...+..+...+...|+.++|...|++.++..
T Consensus 275 --~~~~---~p--------------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 275 --ALEE---YP--------------GADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred --HHHh---CC--------------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 0000 01 22233555666777788888888888877764
No 9
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=4.7e-14 Score=96.72 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=25.5
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 135 PRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 135 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.49 E-value=4.2e-14 Score=96.97 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 149 (442)
||++|||++|++|++.|++++|.++|++|. +.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999999999999999986
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.46 E-value=2.7e-11 Score=120.58 Aligned_cols=266 Identities=11% Similarity=0.072 Sum_probs=192.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN---EASVTSVA 108 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~---~~ty~~li 108 (442)
.+...|++++|+..|.++.+.+ +.+..++..+..++...+ ++++|.++++.+...+..++ ..++..+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRG--------EVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC--------cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3567789999999999998764 235567888877888888 89999999999987643332 35788999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ----QEIAALLKVSAE 184 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~----~ty~~li~~~~~ 184 (442)
..|.+.|++++|..+|+++. +. -.++..+++.++..|.+.|++++|.++++.+...+-.+.. ..|..+...+.+
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLV-DE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHH-cC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999998 53 2346788999999999999999999999999876543322 245677788889
Q ss_pred cCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCC
Q 013497 185 TGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDE 263 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~ 263 (442)
.|+.++|..+|+++.+.. |+ ...+..+...+ ...|...-....++++.....
T Consensus 193 ~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~~p----------------------- 245 (389)
T PRK11788 193 RGDLDAARALLKKALAAD--PQCVRASILLGDLA--LAQGDYAAAIEALERVEEQDP----------------------- 245 (389)
T ss_pred CCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHCh-----------------------
Confidence 999999999999987653 43 44556666777 555444444455555554311
Q ss_pred CCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcChhhH
Q 013497 264 SGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQL 343 (442)
Q Consensus 264 ~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~ 343 (442)
......+..+...|+..|+.++|...|+++++..+..... .+++..... .| .++++
T Consensus 246 -----------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~---~~la~~~~~--~g--~~~~A 301 (389)
T PRK11788 246 -----------------EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL---LALAQLLEE--QE--GPEAA 301 (389)
T ss_pred -----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH---HHHHHHHHH--hC--CHHHH
Confidence 0023456777888999999999999999998876644332 333322111 12 47788
Q ss_pred HHHHHHHHHhcCCCcc
Q 013497 344 DAVVKKLYERSGNKWP 359 (442)
Q Consensus 344 ~~vv~~l~~~~~~~~~ 359 (442)
..+++...+..+....
T Consensus 302 ~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 302 QALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHhCcCHHH
Confidence 8888777666664443
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.7e-11 Score=114.71 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 23 ~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
+.||.+||.+.||--..+.|.++|++..+...+.+..+||.+|.+-+-. ...++..+|....+.||..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------------~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------------VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------------ccHHHHHHHHHhhcCCchH
Confidence 4499999999999999999999999999988899999999999854433 2489999999999999999
Q ss_pred HHHHHHHHHHhcCCHHH----HHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHH-HHHHHHHHH----HCCCCC---
Q 013497 103 SVTSVARLAASKNDGDY----AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEK-AYEVEEHMG----LMGLSL--- 170 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~----A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~M~----~~g~~p--- 170 (442)
|||+++.+.++.|+++. |++++.||+ +-|+.|.+.+|..+|.-+++.++..+ |..+..++. .+.++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999998764 678899999 99999999999999999999998754 444444443 333443
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 171 -EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 171 -~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
|...|.+-+..|....+.+.|+++..-+..
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 456677888888888888888887766543
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=1.4e-09 Score=103.23 Aligned_cols=190 Identities=15% Similarity=0.091 Sum_probs=150.2
Q ss_pred CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCC--------------------CCCC
Q 013497 21 NPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSAT--------------------DPSS 77 (442)
Q Consensus 21 ~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~--------------------~~~~ 77 (442)
.|+. +=|.|+.... .|.+..+.-+|+.|++.|+..+...=-.|+. .|..+.. +..-
T Consensus 112 ~~~~V~~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW 190 (625)
T KOG4422|consen 112 DPLQVETENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW 190 (625)
T ss_pred CchhhcchhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc
Confidence 3554 7777877665 6789999999999999999888888888877 3333220 1112
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 157 (442)
+.|.+.+ ++-+. .+-+..||.+||.|+|+--..+.|.+++++-. ....+.+..+||.+|.+-.-. ...
T Consensus 191 K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhh----ccH
Confidence 3344422 33222 23456799999999999999999999999998 777788999999999775432 237
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhccCCCChHHHHHHHHHhccccCCCc
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK----VYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV 225 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~----a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~ 225 (442)
++..+|....+.||..|||+++.+..+.|+++. |.+++.+|++-|+.|+-.+|..||.-| ++.++.
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f--~re~dp 328 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF--KRESDP 328 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh--cccCCc
Confidence 899999999999999999999999999998765 568899999999999999999999999 776554
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.23 E-value=4.6e-09 Score=114.95 Aligned_cols=267 Identities=8% Similarity=0.018 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
++..+...+.+.|+.++|..+|.++.+.+ +.+...+..+...+...+ ++++|.++++.+.... +.+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG--------QLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC--------CHHHHHHHHHHHHHcC-CCCHHHH
Confidence 77777777777777777777777776543 234455556666666666 6777777777776543 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+..+|.+.|++++|...|+.+. ... ..+...+..+...|.+.|+.++|..+++.+.... +.+..++..+...+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLL-ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 777777777777777777777776 321 2244566677777777777777777777766542 2245666777777777
Q ss_pred cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCC
Q 013497 185 TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDES 264 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~ 264 (442)
.|+.++|.++++.+.... ..++..+..+...+ ...|...-....++.++...... ..+ .......
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~g~~~~A~~~~~~~~~~~~~~---~~~---------~~l~~~~ 746 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLY--LRQKDYPAAIQAYRKALKRAPSS---QNA---------IKLHRAL 746 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH--HHCCCHHHHHHHHHHHHhhCCCc---hHH---------HHHHHHH
Confidence 777777777777776553 23444455554544 33322222222233333221100 000 0000000
Q ss_pred CCCCcCCCccc----ccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcce
Q 013497 265 GKCCSCGDQLA----CVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEA 319 (442)
Q Consensus 265 g~c~~c~~~l~----~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~ 319 (442)
...+...+++. .+...|.+...+..+...+...|+.++|.+.|+++++..+....
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 805 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV 805 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence 00000011111 11223335566666666777889999999999999987654333
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.21 E-value=5.9e-09 Score=114.11 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...+ ++++|..+|+.+.+.. +.+..++
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK--------NYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-CCCHHHH
Confidence 88888888999999999999998887653 234566666666776666 7888888888776643 3356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...+...|++++|..+++.+. ... .++...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQ-KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 778888888888888888887777 433 3455667777777777777887777777776653 444566667777777
Q ss_pred cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 185 TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.|+.++|.+.+.++.... ..++..+..+...|
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~ 780 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELY 780 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 777777777777766542 23444555555555
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.05 E-value=2.5e-10 Score=70.83 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 96 NVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 96 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
|+.||++|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566666666666666666666666666666663
No 17
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=5.1e-10 Score=69.45 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=24.8
Q ss_pred CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 132 NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 132 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777763
No 18
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.88 E-value=8.3e-09 Score=105.82 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=134.2
Q ss_pred ccccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------------------CCCCHHHHHHHHHHH
Q 013497 14 KKRKTNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQN------------------------LRLSLHHFNALLYLC 68 (442)
Q Consensus 14 ~~~~~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g------------------------~~p~~~ty~~ll~~~ 68 (442)
.++..|..|+. ||..+|..||..|+++.|- +|.-|+-.. -.|.+.||+.|+.+|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAY 93 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence 35678899999 9999999999999999998 777665221 136778888888888
Q ss_pred HhcCCCCCCchhhHHHHHHHHHHHH----hCCC-----------------CCCHHHHHHHHHHHHhcCCHHHHHHHH---
Q 013497 69 SDSATDPSSKDSALRHGFRVFDQML----SNNV-----------------IPNEASVTSVARLAASKNDGDYAFVLI--- 124 (442)
Q Consensus 69 ~~~~~~~~~~~~~~~~a~~l~~~M~----~~g~-----------------~p~~~ty~~li~~~~~~g~~~~A~~~~--- 124 (442)
...|.-. .++...+.++... ..|+ -||.. ++|....-.|.++.+++++
T Consensus 94 r~hGDli-----~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 94 RIHGDLI-----LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HhccchH-----HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhC
Confidence 8886100 2333333222221 1222 13322 2222333333333333333
Q ss_pred ---------------------------HHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 125 ---------------------------KRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 125 ---------------------------~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
...++-.+ .|+..+|.+++.+-..+|+++.|..++.+|.+.|+..+..-|..
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 22221122 58999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHH-HHHHh
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKI-IEDWF 217 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~-li~~~ 217 (442)
||-+ .++..-+..++.-|+..|+.|+..|+.. ++..+
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 9887 8888889999999999999999999864 34433
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=2.4e-06 Score=90.66 Aligned_cols=177 Identities=8% Similarity=-0.041 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.+..+.-+....|++++|+..|+++.+. .|+ ...+..+-.++...| ++++|.+.|++..+.. +.+...
T Consensus 78 ~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g--------~~~~Ai~~l~~Al~l~-P~~~~a 146 (656)
T PRK15174 78 LLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK--------QYATVADLAEQAWLAF-SGNSQI 146 (656)
T ss_pred HHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCcHHH
Confidence 4444445555678888888888887654 233 334444444666666 7777888887776542 224566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+..+...+...|+.++|...++.+. .. .|+.......+..+.+.|++++|..+++.+....-.++...+..+...+.
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~-~~--~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQA-QE--VPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 7777777788888888887777765 32 33332222223346677778888777777765543334444555566677
Q ss_pred hcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
+.|+.++|...+++..... |+ ...+..+-..+
T Consensus 224 ~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l 256 (656)
T PRK15174 224 AVGKYQEAIQTGESALARG--LDGAALRRSLGLAY 256 (656)
T ss_pred HCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 7777777777777776542 33 33444444444
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=6.1e-06 Score=87.66 Aligned_cols=162 Identities=14% Similarity=0.011 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.+..+-..+.+.|+.++|+..|+++.+. .| +...+..+..++...| ++++|...++.+......+.. .
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g--------~~~eA~~~~~~~~~~~P~~~~-a 180 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMD--------KELQAISLARTQAQEVPPRGD-M 180 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHhCCCCHH-H
Confidence 4444455555555666666555555432 22 2334444444555555 555555555555443322222 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+..+ ..+...|++++|..+++.+. ...-.++...+..+...+.+.|+.++|...++...... ..+...+..+-..+.
T Consensus 181 ~~~~-~~l~~~g~~~eA~~~~~~~l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 181 IATC-LSFLNKSRLPEDHDLARALL-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHH-HHHHHcCCHHHHHHHHHHHH-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 2122 22455555566655555554 22111222333334455555555666655555555432 113444445555555
Q ss_pred hcCCHHH----HHHHHHHHHh
Q 013497 184 ETGRVEK----VYQYLQKLRS 200 (442)
Q Consensus 184 ~~g~~~~----a~~ll~~m~~ 200 (442)
..|+.++ |...|++...
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHh
Confidence 5555553 4555555543
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.73 E-value=1.1e-05 Score=73.08 Aligned_cols=180 Identities=14% Similarity=0.081 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+...+.+.|++++|.+.|+++.+.. +.+...+..+-.++...+ ++++|.+.|++..+... .+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~~-~~~~~~ 102 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG--------ELEKAEDSFRRALTLNP-NNGDVL 102 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCC-CCHHHH
Confidence 78888899999999999999999987653 234566666666787777 89999999999887653 356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
..+...+...|++++|.+.+++.. .....| ....+..+...+...|+.++|...+++.....- .+...+..+...+.
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 180 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAI-EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHH
Confidence 888999999999999999999988 432222 345677778889999999999999999876532 24567888889999
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
..|+.++|...+++.... ...++..+..+...+
T Consensus 181 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT-YNQTAESLWLGIRIA 213 (234)
T ss_pred HcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 999999999999998876 233444544444444
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.60 E-value=1.2e-05 Score=85.12 Aligned_cols=161 Identities=6% Similarity=-0.103 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.|+.+-..+...|++++|+..|++..+. .|+ ..+|..+-..+...+ ++++|...|+...+.. +-+..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g--------~~~eA~~~~~~al~~~-p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELG--------DPDKAEEDFDKALKLN-SEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhC-CCCHHH
Confidence 4555555555666666666666665543 232 234444444444444 6666666666655442 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
|..+...+...|++++|...|++.. .. .|+ ...+..+-..+.+.|+.++|...|+...... +-+...|+.+-..+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal-~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSI-DL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6666666666666666666666655 22 332 3445555556666666666666666655431 22345566666666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~ 200 (442)
...|++++|.+.|++...
T Consensus 478 ~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHccCHHHHHHHHHHHHh
Confidence 666666666666666544
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.57 E-value=3.7e-07 Score=86.67 Aligned_cols=157 Identities=15% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 109 (442)
..+.+.|++++|++++++.....-.|+...|-.++. ++...+ ..+.|.+.|+++...+.. +...+..++.
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~--------~~~~A~~ay~~l~~~~~~-~~~~~~~l~~ 86 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLG--------DYDEAIEAYEKLLASDKA-NPQDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccc-cccccccccc
Confidence 334455555555555544333222233333333333 333333 455555555555443322 3333444444
Q ss_pred HHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 013497 110 LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAETGRV 188 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~ 188 (442)
. ...+++++|.+++++.- +. .++...+..++..+.+.++++++.++++..... ...++...|..+...+.+.|+.
T Consensus 87 l-~~~~~~~~A~~~~~~~~-~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAY-ER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred c-ccccccccccccccccc-cc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 4 34555555555554433 11 233444444555555555555555555554432 1223444444444555555555
Q ss_pred HHHHHHHHHHHh
Q 013497 189 EKVYQYLQKLRS 200 (442)
Q Consensus 189 ~~a~~ll~~m~~ 200 (442)
++|.+++++..+
T Consensus 163 ~~A~~~~~~al~ 174 (280)
T PF13429_consen 163 DKALRDYRKALE 174 (280)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.52 E-value=2.6e-05 Score=70.63 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~t 103 (442)
.+..+...+...|++++|.+.|++..+..- .+...+..+-..+...+ ++++|.+.|+........ .....
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhccccccchHH
Confidence 788888999999999999999999886542 34456666666777777 899999999998865322 23456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+..+...+...|++++|...+.+.. ... ..+...+..+...+...|+.++|.+.+++.... ...+...+..+...+.
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~ 214 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRAL-QID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIAR 214 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 7778889999999999999999987 431 224567888899999999999999999998876 3446677778888888
Q ss_pred hcCCHHHHHHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~ 200 (442)
..|+.++|..+.+.+..
T Consensus 215 ~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 215 ALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 99999999998887754
No 25
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.43 E-value=4.4e-07 Score=56.44 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
|||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 26
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.42 E-value=4.6e-06 Score=65.56 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL-RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~-~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
|=...|..|...+++.....+|..+++.|+ .|++.+|+.+|..-.+..+++..-+.++-..+.+|++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567778888999999999999999999 9999999999997666667777777788899999999999999999999
Q ss_pred HHHHHHHHHhc
Q 013497 104 VTSVARLAASK 114 (442)
Q Consensus 104 y~~li~~~~~~ 114 (442)
|+++|..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 27
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.38 E-value=5.9e-07 Score=55.82 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL 58 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~ 58 (442)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.34 E-value=3.7e-06 Score=86.94 Aligned_cols=161 Identities=10% Similarity=0.043 Sum_probs=100.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC------------------------CCC
Q 013497 44 SLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN------------------------VIP 99 (442)
Q Consensus 44 ~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g------------------------~~p 99 (442)
.++..|...|+.||.+||.+||.-|+..| .++.|- +|..|+-+. -.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~g--------dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKG--------DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccC--------CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCC
Confidence 46778899999999999999999544444 333333 444443322 136
Q ss_pred CHHHHHHHHHHHHhcCCHHH---HHHHHHHhH---hhCC-----------------CCCCcccHHHHHHHHHHcCCHHHH
Q 013497 100 NEASVTSVARLAASKNDGDY---AFVLIKRMN---NEFN-----------------VVPRLRTYDPALFCFCENLEAEKA 156 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~---A~~~~~~m~---~~~g-----------------~~p~~~ty~~li~~~~~~g~~~~A 156 (442)
-.-||+.|..+|..+|++.. +.+.+.... +..| ..||.. .+|.-....|.++.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaql 158 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQL 158 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHH
Confidence 67788999999999988654 222121111 0111 123322 122222223333333
Q ss_pred HHHH----------------HH-------------HHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 157 YEVE----------------EH-------------MGLMGL-SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 157 ~~l~----------------~~-------------M~~~g~-~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.++. ++ |...+. .|+..+|.+++++-..+|+.+-|..++.+|++.|+..+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 3222 11 112222 58999999999999999999999999999999999998
Q ss_pred hHHHHHHHHH
Q 013497 207 EETGKIIEDW 216 (442)
Q Consensus 207 ~~t~~~li~~ 216 (442)
+.-|-.|+-+
T Consensus 239 ~HyFwpLl~g 248 (1088)
T KOG4318|consen 239 AHYFWPLLLG 248 (1088)
T ss_pred cccchhhhhc
Confidence 8766555544
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.32 E-value=1.4e-05 Score=75.90 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC-CCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g-~~p~~~t 103 (442)
.+..++.. ...+++++|.+++.+.-+.. ++...+..++..+...+ ..+++.++++...... .+++...
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~ 148 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLG--------DYDEAEELLEKLEELPAAPDSARF 148 (280)
T ss_dssp -----------------------------------------H-HHHTT---------HHHHHHHHHHHHH-T---T-HHH
T ss_pred cccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHh--------HHHHHHHHHHHHHhccCCCCCHHH
Confidence 55555555 57777888877776654432 45556666777666666 7777777777765432 3456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
|..+...+.+.|+.++|++.+++.. +. .|+ ....+.++..+...|+.+++.++++...... ..|...+..+..+|
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al-~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKAL-EL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHH-HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHh
Confidence 7777777788888888888887776 32 454 5567777777777788877777777765543 33445667777777
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCc
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV 225 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~ 225 (442)
...|+.++|..+|++.... .+-|+.+...+.+.+ ...|..
T Consensus 225 ~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l--~~~g~~ 264 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKL-NPDDPLWLLAYADAL--EQAGRK 264 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHH--T-----
T ss_pred ccccccccccccccccccc-ccccccccccccccc--cccccc
Confidence 7788888888888776653 123555556666666 444433
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.31 E-value=0.00038 Score=73.71 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=130.0
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 013497 36 SKDLTTAISLYESAHSQN-LRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAA 112 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g-~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~ 112 (442)
.+++++|.+.|++..+.+ ..|+ ...|+.+-.++...| ++++|...|+...+. .|+ ..+|..+...+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g--------~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG--------KHLEALADLSKSIEL--DPRVTQSYIKRASMNL 376 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH
Confidence 467999999999988765 3443 344555544666666 899999999998765 344 568888899999
Q ss_pred hcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013497 113 SKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 191 (442)
..|++++|...|++.. .. .| +...|..+-..|...|++++|...|+...... +.+...+..+...+.+.|++++|
T Consensus 377 ~~g~~~eA~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 377 ELGDPDKAEEDFDKAL-KL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999987 43 34 46788889999999999999999999988753 22456677788889999999999
Q ss_pred HHHHHHHHhccCCCC-hHHHHHHHHHh
Q 013497 192 YQYLQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 192 ~~ll~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
...|++.... .|+ +..+..+-..+
T Consensus 453 ~~~~~~al~~--~P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 453 MATFRRCKKN--FPEAPDVYNYYGELL 477 (615)
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 9999998764 344 55666666666
No 31
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.28 E-value=1.3e-06 Score=54.00 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
|||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
No 32
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=1.5e-06 Score=53.72 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 135 (442)
.|||++|++|++.|+++.|.++|++|+ +.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 689999999999999999999999999 899988
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.21 E-value=0.00047 Score=75.95 Aligned_cols=173 Identities=8% Similarity=-0.060 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-.++.. ++..+|+..|.+.... .|+......+...+...+ ++++|...|+.+... .|+...+
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G--------r~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE--------DYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC--------CHHHHHHHHHHHhcc--CCCcHHH
Confidence 55555555555 7888899988776644 366443222222444566 899999999987543 3444556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
..+...+.+.|+.++|...++... .. .|+. ..+..+.....+.|+.++|...+++..+. .|+...|..+-..+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL-~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAE-QR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-hc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 677778888999999999998887 43 3433 22222223334559999999999888764 467788888888899
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChH-HHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWF 217 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~li~~~ 217 (442)
+.|+.++|...|++.... .|+.. .+..+-..+
T Consensus 621 ~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 621 QRHNVPAAVSDLRAALEL--EPNNSNYQAALGYAL 653 (987)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999999887765 46544 334444444
No 34
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.14 E-value=2.9e-06 Score=51.15 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
|||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.13 E-value=0.00069 Score=70.76 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=121.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKN 115 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 115 (442)
.++.++|...+++..+.. +-+...+..+-.++...+ ++++|...|++..+... .+...+..+-..|...|
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS--------EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAG 386 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCC
Confidence 355899999999988653 224555655544666677 89999999999887652 34667888889999999
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLR-TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 194 (442)
++++|...+++.. + +.|+.. .+..+...+...|+.++|...+++.....-.-+...+..+-.++...|+.++|...
T Consensus 387 ~~~eAi~~~~~Al-~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 387 QLEEALQTINECL-K--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred CHHHHHHHHHHHH-h--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999988 4 356543 33444555777899999999999987653222344567777788899999999999
Q ss_pred HHHHHhccCCCChHHH-HHHHHHh
Q 013497 195 LQKLRSTVRCVNEETG-KIIEDWF 217 (442)
Q Consensus 195 l~~m~~~~~~p~~~t~-~~li~~~ 217 (442)
+.++... .|+..+. +.+...+
T Consensus 464 ~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 464 TKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred HHHhhhc--cchhHHHHHHHHHHH
Confidence 9887544 4444333 3444444
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.10 E-value=0.0019 Score=64.59 Aligned_cols=168 Identities=8% Similarity=0.009 Sum_probs=94.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
.|+++.|.+......+..- ++..+-.+.. +....| +++.|.+.|.++.+....+...........+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g--------~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRG--------DEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 5788888877776554321 2222222222 334444 6788888888776533222222222335677778
Q ss_pred CCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 013497 115 NDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-------QEIAALLKVSAETG 186 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-------~ty~~li~~~~~~g 186 (442)
|+++.|...+++.. +. .| +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.-.....
T Consensus 167 g~~~~Al~~l~~~~-~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLL-EV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888777 43 34 3456777777888888888888888888776554322 13334444443444
Q ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 187 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 187 ~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+.+...++++.+... ...++.....+...+
T Consensus 244 ~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l 273 (398)
T PRK10747 244 GSEGLKRWWKNQSRK-TRHQVALQVAMAEHL 273 (398)
T ss_pred CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHH
Confidence 444455554444322 123444555555555
No 37
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=6.6e-05 Score=74.17 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=81.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 013497 52 QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN--NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN 129 (442)
Q Consensus 52 ~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~ 129 (442)
.+.+.+......+++.+.... .++.+..++-..+.. ....-..|..++|+.|.+.|..+.++.++..=.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~--------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~- 130 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKD--------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRL- 130 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHh--------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChh-
Confidence 344556666666666655555 666777766666543 222223344577777777777777777777766
Q ss_pred hCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 013497 130 EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (442)
Q Consensus 130 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 185 (442)
..|+-||..|||.||+.+.+.|++..|.+|..+|..++...+..|+.--+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 67777777777777777777777777777777777776666666666555555444
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.08 E-value=0.00088 Score=73.83 Aligned_cols=151 Identities=12% Similarity=0.052 Sum_probs=74.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
.+.|++++|...|+++... .|+...+..+..++...| ++++|.+.|+...+.. +++...+..+...+.+
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G--------d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG--------NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 4566666666666665433 233333333333444444 5555666665555443 1122222222223333
Q ss_pred cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVY 192 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~ 192 (442)
.|++++|...+++.. . +.|+...|..+-..+.+.|+.++|...+++..... | +...++.+-..+...|+.++|.
T Consensus 589 ~Gr~~eAl~~~~~AL-~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSL-N--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHH-H--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456666666655554 2 24455555555555556666666666555555432 2 2334444444555555566655
Q ss_pred HHHHHHHh
Q 013497 193 QYLQKLRS 200 (442)
Q Consensus 193 ~ll~~m~~ 200 (442)
.++.+..+
T Consensus 664 ~~l~~AL~ 671 (987)
T PRK09782 664 EMLERAHK 671 (987)
T ss_pred HHHHHHHH
Confidence 55555443
No 39
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.08 E-value=0.00056 Score=77.74 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC------
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI------ 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~------ 98 (442)
.+..+-..+.+.|++++|++.|++..+.. +.+...+..+..++... ..++|..+++.+......
T Consensus 387 a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~---------~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 387 AVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ---------SPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc---------CHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66777888999999999999999987643 22344555555554332 345555555443211000
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 99 --PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 99 --p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
.....+..+...+...|++++|.+.|++.. . +.|+ ...+..+...|.+.|+.++|..+++......- .+...+
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~ 532 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRL-A--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQV 532 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence 011233445555666666666666666655 2 2343 23444555556666666666666666554221 122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 013497 176 AALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m 198 (442)
..+...+...++.++|...++.+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhC
Confidence 22223334455555555555443
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.06 E-value=0.0012 Score=75.20 Aligned_cols=173 Identities=6% Similarity=-0.035 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+..+-..+...|+.++|++.|++..+.. | +...+..+-.++...| ++++|..+|++..+.... +...+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G--------~~~~A~~~l~~al~~~P~-~~~~~ 532 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG--------QRSQADALMRRLAQQKPN-DPEQV 532 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCC-CHHHH
Confidence 4455667788999999999999988653 4 3445555556777777 899999999998764322 33444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---------cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---------TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---------ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
-.+...+.+.++.++|+..++.+. .....++.. .+-.+...+...|+.++|.++++. .+++...+
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~ 606 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID 606 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence 444455677888999988888765 322222211 122345567777888888777762 23344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHh
Q 013497 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
..|-..+.+.|+.++|.+.|++.... .|+ +.....+...+
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 66777777788888888887777654 333 44555555555
No 41
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.05 E-value=0.0016 Score=70.45 Aligned_cols=325 Identities=12% Similarity=0.048 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL--HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 22 p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
|+..|...|- ..+.|+++.|+..|.+..+. .|+. ..+ .++.++...| ..++|+.++++... .-..
T Consensus 34 ~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G--------~~~~A~~~~eka~~-p~n~ 100 (822)
T PRK14574 34 ADTQYDSLII-RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAG--------RDQEVIDVYERYQS-SMNI 100 (822)
T ss_pred hhHHHHHHHH-HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcC--------CcHHHHHHHHHhcc-CCCC
Confidence 3345555554 45678888998888887755 3332 233 6666666666 78888888887751 1112
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
......++...|...|++++|+++++++. +. .|+ ...+..++..|...++.++|++.++.+... .|+...+..+
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL-~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l 175 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSL-KK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL 175 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH
Confidence 23333344567777788888888888887 33 333 355567777888888888888888887654 4555555444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHH-----------------HHHHhcC
Q 013497 179 LKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVK-----------------NAVLKNG 240 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~-----------------~a~~~~~ 240 (442)
+..+...++..+|.+.++++.+. .|+ +..+.-+.... ...|........++ .+.+..
T Consensus 176 ayL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l--~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v- 250 (822)
T PRK14574 176 SYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEIL--QRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV- 250 (822)
T ss_pred HHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH--HHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH-
Confidence 44444455665688888888766 354 33334444444 22211111111111 111110
Q ss_pred CcccCCccccccceEEeeeccCCCCCCCcCCCccccc-------CCCHH---H-HHHHHHHHHHHhHHHHHHhhHHHHHH
Q 013497 241 GGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACV-------DIDDA---E-TERFAQSVAALAMEREVKANFSEFQD 309 (442)
Q Consensus 241 ~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~-------~l~~~---d-~~~~~~~I~~~~~~g~~~~a~~~F~~ 309 (442)
.|....+. .....-.....+|... .-.|+ . .......+.++...++..++.+.|+.
T Consensus 251 ------------r~a~~~~~-~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 251 ------------RMAVLPTR-SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred ------------hhcccccc-cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11100000 0000000111111111 11121 1 22233556678888889999999999
Q ss_pred HHHHcCC-cceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCC--CccEEE-----ccCccccCCCCChhhHHHH
Q 013497 310 WLEKNAN-YEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGN--KWPLVI-----LHNKRLRSLWENPSHRNLV 381 (442)
Q Consensus 310 m~~~~~~-~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~--~~~l~~-----l~~~~~~~~~~~~~~~~~~ 381 (442)
+...+.+ |+.+....=-+|.... ..+++..+.+.+.+..+. ..|.-+ |.--++ ..++...++.++
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~------~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l-d~e~~~~A~~~l 390 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRR------LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN-ESEQLDKAYQFA 390 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcC------CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH-hcccHHHHHHHH
Confidence 9987743 5555444333444433 467888888888654210 011111 111122 244556788999
Q ss_pred HHHHhcCe
Q 013497 382 EEWNEKGV 389 (442)
Q Consensus 382 ~~~~~~~~ 389 (442)
+++.+..-
T Consensus 391 ~~~~~~~p 398 (822)
T PRK14574 391 VNYSEQTP 398 (822)
T ss_pred HHHHhcCC
Confidence 99998433
No 42
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.04 E-value=4.5e-06 Score=50.28 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNV 133 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 133 (442)
+|||+||++|++.|++++|.++|++|+ +.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCcC
Confidence 489999999999999999999999999 7764
No 43
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=0.00013 Score=72.11 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=109.6
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC--CCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 88 VFDQMLS---NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 88 l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
++..|.+ .+.+.+.+...++++.+....+++++..++...+ .. ....-..|..++|..|.+.|..+++.+++..
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R-~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFR-HSPNCSYLLPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHH-cCcccccccCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 5555543 4456688899999999999999999999998887 43 2223335667999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 163 MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 163 M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
=...|+.||..|||.||+.+.+.|++..|.++..+|.......++.|+..-+..|
T Consensus 129 ~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 129 RLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred hhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888988887666666
No 44
>PRK12370 invasion protein regulator; Provisional
Probab=97.98 E-value=0.00073 Score=70.54 Aligned_cols=182 Identities=9% Similarity=-0.010 Sum_probs=124.2
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
..|+. .+..+-..+...|++++|...|++..+.+ +-+...|..+-.++...| ++++|...|++..+...
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAG--------QLEEALQTINECLKLDP 403 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCC
Confidence 34544 77777777888999999999999988764 223455655555777777 99999999999987654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEI 175 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty 175 (442)
.+ ...+..+...+...|++++|...+++.. ... .|+. ..+..+-.+|...|+.++|...+..+... .|+. ...
T Consensus 404 ~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l-~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~ 478 (553)
T PRK12370 404 TR-AAAGITKLWITYYHTGIDDAIRLGDELR-SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAV 478 (553)
T ss_pred CC-hhhHHHHHHHHHhccCHHHHHHHHHHHH-Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHH
Confidence 42 2233344555777899999999999886 432 3543 34667778888999999999999887544 3343 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChHHHHHHHHHh
Q 013497 176 AALLKVSAETGRVEKVYQYLQKLRST-VRCVNEETGKIIEDWF 217 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m~~~-~~~p~~~t~~~li~~~ 217 (442)
+.|...|+..| ++|...++.+.+. ...+.......++.++
T Consensus 479 ~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 479 NLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 55555667777 5788877777553 2223333334444444
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.96 E-value=0.0057 Score=66.48 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
...-.+......|+.++|++++.+..... ..+...+..+-.++...+ ++++|.++|++..+.. +.+...+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g--------~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK--------QWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCCHHHH
Confidence 34445556778899999999999987522 345556777777888888 8999999999987653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...+...|+.++|...+++.. .. .|+...+..+-..+...|+.++|...+++..+..-. +...+..+...+..
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l-~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~ 162 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLV-SG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN 162 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 888899999999999999999998 43 454333888888999999999999999999876322 44556677888888
Q ss_pred cCCHHHHHHHHHHHH
Q 013497 185 TGRVEKVYQYLQKLR 199 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~ 199 (442)
.|..++|...++...
T Consensus 163 ~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 163 NRLSAPALGAIDDAN 177 (765)
T ss_pred CCChHHHHHHHHhCC
Confidence 999999998887554
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.94 E-value=0.0031 Score=64.03 Aligned_cols=248 Identities=12% Similarity=0.047 Sum_probs=161.0
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHH----HHHhcCCCCCCchhhHHHHHHHHH
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQ---NLRLSLHHFNALLY----LCSDSATDPSSKDSALRHGFRVFD 90 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~---g~~p~~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~l~~ 90 (442)
..|.. +...+-..|...|+++.|+.++....+. +.-.+.....+++. +|...+ ++++|..+|+
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--------k~~eAv~ly~ 265 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--------KYDEAVNLYE 265 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--------cHHHHHHHHH
Confidence 34444 8888999999999999999999986543 11122233333333 566666 8999999999
Q ss_pred HHHh-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh----hCCC-CCCc-ccHHHHHHHHHHcCCHHHHH
Q 013497 91 QMLS-----NNVI-PN-EASVTSVARLAASKNDGDYAFVLIKRMNN----EFNV-VPRL-RTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 91 ~M~~-----~g~~-p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~~g~-~p~~-~ty~~li~~~~~~g~~~~A~ 157 (442)
++.. .|-. |. ..|++.|-.+|++.|++++|...++...+ ..|. .|.+ .-++.+...|+..+++++|.
T Consensus 266 ~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 266 EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 8865 2222 22 46777777889999999998888876541 1121 2222 34677888899999999999
Q ss_pred HHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----cCCCChH---HHHHHHHHhccccCC
Q 013497 158 EVEEHMGLM---GLSLE----QQEIAALLKVSAETGRVEKVYQYLQKLRST----VRCVNEE---TGKIIEDWFSGQKVN 223 (442)
Q Consensus 158 ~l~~~M~~~---g~~p~----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~----~~~p~~~---t~~~li~~~~~~~~~ 223 (442)
.++....+. -+.++ ..+|+.|-..|-+.|++++|.+++.+.... +..-+.. .++-|-..| ....
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~--~~~k 423 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY--EELK 423 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH--HHhc
Confidence 988865432 12222 358999999999999999999999887542 2222222 334455555 3332
Q ss_pred CcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhh
Q 013497 224 GVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKAN 303 (442)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a 303 (442)
...++.....++... +...|.+. |.-..+|..+...|...|+.+.|
T Consensus 424 ~~~~a~~l~~~~~~i----------------------~~~~g~~~------------~~~~~~~~nL~~~Y~~~g~~e~a 469 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDI----------------------MKLCGPDH------------PDVTYTYLNLAALYRAQGNYEAA 469 (508)
T ss_pred ccchHHHHHHHHHHH----------------------HHHhCCCC------------CchHHHHHHHHHHHHHcccHHHH
Confidence 333333444444332 11112111 22456788888999999999998
Q ss_pred HHHHHHHH
Q 013497 304 FSEFQDWL 311 (442)
Q Consensus 304 ~~~F~~m~ 311 (442)
+++-...+
T Consensus 470 ~~~~~~~~ 477 (508)
T KOG1840|consen 470 EELEEKVL 477 (508)
T ss_pred HHHHHHHH
Confidence 87766554
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.93 E-value=0.0015 Score=65.25 Aligned_cols=193 Identities=8% Similarity=-0.048 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL-------HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~-------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
.+..+...|.+.|++++|.+++..+.+.+..++. .+|..++..-.... ..+...++++.+.+. .
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~--------~~~~l~~~w~~lp~~-~ 259 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ--------GSEGLKRWWKNQSRK-T 259 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHhCCHH-H
Confidence 7778888888888888888888888877654322 12223333211121 234444555544222 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
+.+......+..++...|+.++|.+++++.. +. .||. --.++.+.+..++.+++.+..+...+.. +-|...+.+
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l-~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~ 333 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGL-KR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWST 333 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 4577888999999999999999999999887 43 4444 2224555556799999999999988653 224556778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHH
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAV 236 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~ 236 (442)
+-..+.+.+++++|.+.|+..... .|+..++..+-..+ .+.|...-.....++++
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~--~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL--DRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHH
Confidence 888999999999999999999875 69998888888888 55543333334444443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.86 E-value=0.0018 Score=65.07 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HH---HhcCCCCCCchhhHHHHHHHHHHHHhCCCC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LC---SDSATDPSSKDSALRHGFRVFDQMLSNNVI-- 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~---~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-- 98 (442)
.+..+...+.+.|++++|.+++..+.+.++. +...+..+-. +. ...+ ..+.+.+.+..+.+.-..
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~--------~~~~~~~~L~~~~~~~p~~~ 259 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA--------MADEGIDGLLNWWKNQPRHR 259 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH--------HHhcCHHHHHHHHHHCCHHH
Confidence 6667777778888888888888887777643 3333322111 11 1111 222233345444443221
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--
Q 013497 99 -PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT---YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-- 172 (442)
Q Consensus 99 -p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-- 172 (442)
.+...+..+...+...|+.++|.+++++.. +. .||... ...........++.+.+.+.++...+. .|+.
T Consensus 260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l-~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~ 334 (409)
T TIGR00540 260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGL-KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPK 334 (409)
T ss_pred hCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChh
Confidence 378888999999999999999999999988 43 566543 122223334467888888888877654 3444
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHH
Q 013497 173 -QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNA 235 (442)
Q Consensus 173 -~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a 235 (442)
....++-..+.+.|++++|.+.|+........|++.++..+...+ .+.|...-.....+++
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll--~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAF--DQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHH
Confidence 445578888899999999999999655556689999888888888 5554333333334444
No 49
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=6.7e-06 Score=80.22 Aligned_cols=105 Identities=26% Similarity=0.315 Sum_probs=82.5
Q ss_pred CcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCCccEEEccCccccCCCCChhhHHHHHHHHhcCeEEeCCC
Q 013497 316 NYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGVLYMTPH 395 (442)
Q Consensus 316 ~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (442)
..-++|||-|||+...| +-.|++..+...++++.++++ +.+.+.+..++.... .+ ..++..+.++..+-|||+
T Consensus 12 ~~P~~i~~~~~~ls~G~--~~~f~~r~~~v~~~~~~~~~~-rd~tv~~~~~r~e~~--~p--~~~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGN--EEVFSCRGILVSVDWFLQRGH-RDITVLVPSWRKEAT--RP--DAILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccc--hhheecccceeehhhhhhhcc-cCcchhchhhhhcCC--ch--HHHHHHHHhccccccCCC
Confidence 45689999999998776 236788889999999999877 334444443332221 12 238999999999999999
Q ss_pred C--------CCccHHHHHHHHhcCcEEEecCccccchhhc
Q 013497 396 G--------SNDDWYWLYAAVKLRCLLVTNDEMRDHIFEL 427 (442)
Q Consensus 396 ~--------~~DD~~~l~aa~~~~~~~vsnD~~rdh~~~~ 427 (442)
. ++||||++..|.+++++|++||.+||..-+.
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le~ 124 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILES 124 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhhc
Confidence 8 8999999999999999999999999986554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.86 E-value=0.0072 Score=60.63 Aligned_cols=120 Identities=11% Similarity=0.004 Sum_probs=58.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
.|+++.|.+.+.+..+. .|+...+-.+.. +....| +.+.|.+.|.+..+....++...--+....+...
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g--------~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRG--------DEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 45666666666554433 333333333322 333334 5555666665554433222222233335555555
Q ss_pred CCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 115 NDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
|+++.|...++++. +. .| +......+...|...|++++|.+++..+.+.++
T Consensus 167 ~~~~~Al~~l~~l~-~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 167 NELHAARHGVDKLL-EM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred CCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66666666666555 32 23 233455555555666666666666555555543
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.84 E-value=0.005 Score=66.96 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=127.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC--------
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-------- 97 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-------- 97 (442)
+-..|...|++++|+.+|+++.+..-.. ....+..|..++...+ ++++|.++++.+.....
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g--------~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE--------NYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc--------cHHHHHHHHHHHhhcCCceEeecCC
Confidence 4557788888888888888876432111 1233444444556666 89999999999987531
Q ss_pred ---CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 98 ---IPN---EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 98 ---~p~---~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
.|+ ...+..+...+...|+.++|+++++++. .. .+-+...+..+...+...|+.++|+++++...... |+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al-~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd 425 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA-YN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PR 425 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC
Confidence 133 2355677889999999999999999988 43 23355778888899999999999999999887753 55
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 172 -QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 172 -~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
...+-.+...+.+.|++++|..+++++... .|+......+-...
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 455666677888999999999999999875 56655544444333
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.83 E-value=0.0037 Score=57.45 Aligned_cols=164 Identities=13% Similarity=0.044 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-L---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
.+-.+...+.+.|++++|...|+++.... |+ . .++..+-.++...+ ++++|...|+++.+......
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~--------~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSG--------DYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCC
Confidence 67777778889999999999999987543 32 2 23444444666666 89999999999987554322
Q ss_pred HH--HHHHHHHHHHhc--------CCHHHHHHHHHHhHhhCCCCCCcc-cHH-----------------HHHHHHHHcCC
Q 013497 101 EA--SVTSVARLAASK--------NDGDYAFVLIKRMNNEFNVVPRLR-TYD-----------------PALFCFCENLE 152 (442)
Q Consensus 101 ~~--ty~~li~~~~~~--------g~~~~A~~~~~~m~~~~g~~p~~~-ty~-----------------~li~~~~~~g~ 152 (442)
.. ++..+-.++... |+.++|.+.|+.+. .. .|+.. .+. .+-..|.+.|+
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-RR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA 181 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22 344444444443 77899999999987 43 45442 211 33456778899
Q ss_pred HHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 153 AEKAYEVEEHMGLMG--LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 153 ~~~A~~l~~~M~~~g--~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.++|...++...+.. -......+..+...+.+.|+.++|..+++.+...
T Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999987652 1223568889999999999999999999888764
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00038 Score=54.96 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCC-CCCcccHHHHHHHHHHcCC--------HHHHHHHHHHHHHCCCCCCHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTYDPALFCFCENLE--------AEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~ty~~li~~~~~~g~--------~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
...|.-+...+++.....+|+..+ +.|+ .|++.+|+.++.+.++... +-.++.+|+.|...+++|+..||
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk-RN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK-RNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 345555556677777777777777 7777 7777777777777765432 33455677777777777777777
Q ss_pred HHHHHHHHh
Q 013497 176 AALLKVSAE 184 (442)
Q Consensus 176 ~~li~~~~~ 184 (442)
+.+|..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777776654
No 54
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.71 E-value=0.008 Score=65.08 Aligned_cols=168 Identities=11% Similarity=0.019 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC-----CCCCH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-----VIPNE 101 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g-----~~p~~ 101 (442)
--.|-++.+.|+..++++.|+.|...|.+...++--.+-.+|...+ .+++|..+|....... ..++.
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~--------~P~kA~~l~~~~~~~~~~~~~~~~~~ 367 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR--------LPEKAAPILSSLYYSDGKTFRNSDDL 367 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhhccccccCCCcch
Confidence 3467788899999999999999999997766677777888888887 8999999999986543 23355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC---------------Cc-ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP---------------RL-RTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---------------~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.....|.-+|...+++++|..+++.+. .. .| |. ..+..++..+...|++.+|++.++++..
T Consensus 368 ~~~~~L~yA~ld~e~~~~A~~~l~~~~-~~--~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~ 444 (822)
T PRK14574 368 LDADDLYYSLNESEQLDKAYQFAVNYS-EQ--TPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS 444 (822)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH-hc--CCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 557889999999999999999999998 52 33 11 1244567788999999999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 166 MGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 166 ~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.. +-|......+-+.+...|...+|.++++..... .|+..
T Consensus 445 ~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 445 TA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred hC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 53 337778889999999999999999999665443 55543
No 55
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.00046 Score=61.12 Aligned_cols=109 Identities=9% Similarity=0.056 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCC
Q 013497 55 RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV 134 (442)
Q Consensus 55 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 134 (442)
.-|-.+|..+|..+.... ..+.|.++-....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.|=
T Consensus 44 ~k~K~~F~~~V~~f~~~~---~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F------ 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRD---VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF------ 112 (228)
T ss_pred cccHHHHHHHHHHHHhcC---CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh------
Confidence 446688888888776553 34666899999999999999999999999999998765 3221 112222221
Q ss_pred CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 013497 135 PRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG 186 (442)
Q Consensus 135 p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 186 (442)
.-| -.+-+-|.+|+++|...|+.||..|+..|++.+.+.+
T Consensus 113 ----------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 ----------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ----------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 1123445666666666666666666666666665544
No 56
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.61 E-value=0.0012 Score=58.59 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 25 NFLINLQSCTKS-----KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 25 ~~~~li~~~~k~-----g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
+|..+|+.|.+. |.++=....+..|.+-|+.-|..+|+.||..+=++... -..+|+.|--
T Consensus 49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv----------p~n~fQ~~F~----- 113 (228)
T PF06239_consen 49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV----------PRNFFQAEFM----- 113 (228)
T ss_pred HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc----------cccHHHHHhc-----
Confidence 788899999865 77777788889999999999999999999988776511 1222222210
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~ 152 (442)
- .-.+-+-|++++++|. ..|+.||..|+..|++.|++.+.
T Consensus 114 ----------h--yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ----------H--YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------c--CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 0 1123445666666666 66666666666666666666554
No 57
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.60 E-value=0.046 Score=52.22 Aligned_cols=149 Identities=10% Similarity=-0.064 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 37 KDLTTAISLYESAHSQN-LRLSL--HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 37 g~~~~A~~lf~~m~~~g-~~p~~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
+..+.++.-+.++.... +.|+. ..|..+=.++...| ..++|...|++..+... .+...|+.+-..|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g--------~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG--------LRALARNDFSQALALRP-DMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44566777777776442 33322 33444333566666 89999999999877643 367899999999999
Q ss_pred cCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 192 (442)
.|++++|...|+... + +.|+ ..+|..+-..+...|+.++|.+.|+..... .|+..........+...++.++|.
T Consensus 111 ~g~~~~A~~~~~~Al-~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 111 AGNFDAAYEAFDSVL-E--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred CCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHH
Confidence 999999999999987 4 4565 466777778888999999999999998764 354332222222334567899999
Q ss_pred HHHHHHH
Q 013497 193 QYLQKLR 199 (442)
Q Consensus 193 ~ll~~m~ 199 (442)
..|.+..
T Consensus 186 ~~l~~~~ 192 (296)
T PRK11189 186 ENLKQRY 192 (296)
T ss_pred HHHHHHH
Confidence 9997654
No 58
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=0.0017 Score=65.83 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=130.2
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
..|+. +|.++=++|.-.++.+.|++.|++..+. .| .+++|+.+=+=+.... .+|.|...|+..
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~e--------e~d~a~~~fr~A---- 481 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATE--------EFDKAMKSFRKA---- 481 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhH--------HHHhHHHHHHhh----
Confidence 34555 9999999999999999999999998754 33 4577766544333344 799999999876
Q ss_pred CCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 013497 97 VIPNEASVTSVA---RLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 97 ~~p~~~ty~~li---~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
+.+|.--||++- -.|.+.++.+.|+-.|+... .+.| +.+.-..+-..+-+.|+.|+|+.++++.....-+ |.
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 456666677654 56899999999999998876 4556 4455566667777899999999999998765433 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHH-HHHHHHh
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG-KIIEDWF 217 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-~~li~~~ 217 (442)
.+---....+...++.++|+..|++++.. .|++.+. ..+-.-|
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIY 601 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHH
Confidence 32223444556689999999999999865 6777644 4444455
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.60 E-value=0.007 Score=61.19 Aligned_cols=286 Identities=12% Similarity=0.053 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC--------------------------CCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSAT--------------------------DPSS 77 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~~~~~~--------------------------~~~~ 77 (442)
.|+.|=..+-..|++-.|+..|++.... .|+ .-.|-.|=..|...++ --|-
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 5666666666667777777777766532 221 1223333223333330 0012
Q ss_pred chhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEK 155 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~ 155 (442)
..|.+|.|.+.|++..+. .|+ ...|+.|..++-..|++.+|...+.... . +.|+. -+.+.|-..|...|.+++
T Consensus 298 eqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-~--l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL-R--LCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred ccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH-H--hCCccHHHHHHHHHHHHHhccchH
Confidence 234666666666665543 333 3566666666666677777766666655 2 23332 455666666666666776
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHH
Q 013497 156 AYEVEEHMGLMGLSLE-QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKN 234 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~ 234 (442)
|..+|..-.+ +.|. ...+|.|-..|-..|++++|...+++-.+ +.|+- .+++ ...|...-..+++..
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f------Ada~--~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF------ADAL--SNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH------HHHH--HhcchHHHHhhhHHH
Confidence 6666665543 2332 23456666666667777777666665542 23321 1122 111111111133333
Q ss_pred HHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 235 AVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
|+.-. .+.|.+.|.=.+.++.+-+.+--.|.+.+|...+++-+.-
T Consensus 441 A~q~y----------------------------------~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl- 485 (966)
T KOG4626|consen 441 AIQCY----------------------------------TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL- 485 (966)
T ss_pred HHHHH----------------------------------HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc-
Confidence 32210 1112233323334445555566678899999999987754
Q ss_pred CCcceEEeccchhccccccCCCCcCh-hhHHHHHHHHHHhcCCCccEEEccCcc
Q 013497 315 ANYEAIVDGANIGLYQQNFTEGGFSV-PQLDAVVKKLYERSGNKWPLVILHNKR 367 (442)
Q Consensus 315 ~~~d~vIdg~Nv~~~~~~~~~~~~~~-~~~~~vv~~l~~~~~~~~~l~~l~~~~ 367 (442)
.||.-=-+-|.+++.|-.|.|. ++ +.+..+++..+++.. ++.|--+|-.|
T Consensus 486 -kPDfpdA~cNllh~lq~vcdw~-D~d~~~~kl~sivrdql~-~~rlpsvhP~h 536 (966)
T KOG4626|consen 486 -KPDFPDAYCNLLHCLQIVCDWT-DYDKRMKKLVSIVRDQLE-KNRLPSVHPHH 536 (966)
T ss_pred -CCCCchhhhHHHHHHHHHhccc-chHHHHHHHHHHHHHHHh-hhcCCccCccc
Confidence 4444444678888877666665 33 234455555554432 33333334433
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0033 Score=58.82 Aligned_cols=167 Identities=12% Similarity=0.018 Sum_probs=132.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
+-|=.+|.+.|.+.+|.+.|+..... .|-+.||-.|-+.|.+.. .++.|+.+|.+-.+. ++-|+....-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid--------QP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID--------QPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc--------cHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 45667889999999999999987766 455667877777999888 899999999987654 3334444456
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG 186 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 186 (442)
+.+.+-..++.++|.+++++.. +.. ..++.....+-.+|.-.++.+.|+..++.+...|+. +...|+.+--+|.-.+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vl-k~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVL-KLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHH-hcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 7788888999999999999987 432 446677777788888999999999999999999987 6677888888888899
Q ss_pred CHHHHHHHHHHHHhccCCCCh
Q 013497 187 RVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 187 ~~~~a~~ll~~m~~~~~~p~~ 207 (442)
.+|-++--|++-...-..|+.
T Consensus 373 Q~D~~L~sf~RAlstat~~~~ 393 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQ 393 (478)
T ss_pred chhhhHHHHHHHHhhccCcch
Confidence 999998888877665555553
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.57 E-value=0.0058 Score=62.06 Aligned_cols=172 Identities=13% Similarity=0.008 Sum_probs=125.5
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH---hC--C-CCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHH
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAH---SQ--N-LRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFD 90 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~---~~--g-~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~ 90 (442)
..|.+ +++.|=..|++.|++++|...+++.. +. | ..|.+.+..+-+. .|...+ .+++|..++.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~--------~~Eea~~l~q 349 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN--------EYEEAKKLLQ 349 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--------chhHHHHHHH
Confidence 34555 88889899999999999999998854 22 2 2344444443343 666666 7999998888
Q ss_pred HHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---CC--CCCC-cccHHHHHHHHHHcCCHHHHH
Q 013497 91 QMLS---NNVIPN----EASVTSVARLAASKNDGDYAFVLIKRMNNE---FN--VVPR-LRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 91 ~M~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---~g--~~p~-~~ty~~li~~~~~~g~~~~A~ 157 (442)
...+ .-+.++ ..+|+.|-..|-+.|++++|.++|++..+. .+ ..+. -..++.|-..|.+.+...+|.
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 6543 112232 368999999999999999999999987621 11 1222 356788888999999999999
Q ss_pred HHHHHHH----HCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 158 EVEEHMG----LMGL-SL-EQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 158 ~l~~~M~----~~g~-~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
++|.+-. ..|. .| ...+|..|...|...|++++|.++.+...
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9988753 3332 22 34688999999999999999999988775
No 62
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.54 E-value=0.00086 Score=63.71 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=93.5
Q ss_pred CCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 21 NPET-NFLINLQSCTKS-KDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 21 ~p~~-~~~~li~~~~k~-g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
.|.. .. .++..|.+. .+-+.++.-+++.......++..++..+.. .+...| .+++|++++..-
T Consensus 63 ~~~l~av-~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~--------~~~~AL~~l~~~----- 128 (290)
T PF04733_consen 63 SPELQAV-RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG--------DYEEALKLLHKG----- 128 (290)
T ss_dssp SCCCHHH-HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC--------HHHHHHCCCTTT-----
T ss_pred ChhHHHH-HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC--------CHHHHHHHHHcc-----
Confidence 4444 33 333444443 445555555554443333323333333333 444445 788888777532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
-+.-.....+..|.+.++++.|.+.++.|+ +. ..|. +-.-|..++.. ...+.+|+.+|+++.+. ..++..
T Consensus 129 -~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~ 202 (290)
T PF04733_consen 129 -GSLELLALAVQILLKMNRPDLAEKELKNMQ-QI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPK 202 (290)
T ss_dssp -TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-CC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHH
T ss_pred -CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-hc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHH
Confidence 355666677888888888888888888888 43 3343 33334443332 33578888888887554 556778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+.|.+..+....|++++|.+++.+-..
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888888888888888888877543
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.52 E-value=0.013 Score=54.90 Aligned_cols=164 Identities=13% Similarity=0.071 Sum_probs=90.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 013497 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE----ASVTSVA 108 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~----~ty~~li 108 (442)
|-..|-+|.|..+|..+.+.|. .-...--.|+..|.... .+++|.++=+++.+.+-.+.. ..|.-|.
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tr--------eW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATR--------EWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 4445555555555555554332 11123334444555444 555555555555544433321 1233333
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPA-LFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 187 (442)
..+....+++.|..++..-. .. .|+.+--+.+ =..+...|++..|.+.++...+++..--..+...|..+|...|+
T Consensus 188 q~~~~~~~~d~A~~~l~kAl-qa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 188 QQALASSDVDRARELLKKAL-QA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHH-hh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 33334445555555555544 21 3333333333 24566778888888888888777655455667788888888888
Q ss_pred HHHHHHHHHHHHhccCCCChH
Q 013497 188 VEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 188 ~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.++....+.++.+....++..
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHHHccCCccHH
Confidence 888888888887765555543
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.49 E-value=0.073 Score=50.88 Aligned_cols=127 Identities=10% Similarity=-0.063 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+=..|.+.|+.++|...|++..+.. +-+...|+.+-..+...+ ++++|.+.|+...+.... +..+|
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~P~-~~~a~ 135 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAG--------NFDAAYEAFDSVLELDPT-YNYAY 135 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCC-CHHHH
Confidence 45555556778888888888888877653 234567777666777777 788888888887764322 45667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
..+-..+...|++++|.+.|+... . ..|+..........+...++.++|.+.|+...
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al-~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFY-Q--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777778888888888888766 3 24544322222222334566777777775543
No 65
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.48 E-value=0.0031 Score=62.17 Aligned_cols=125 Identities=15% Similarity=0.111 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-Cc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RL 137 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~ 137 (442)
+.-.+|+..+...+ +++.|.++|+++.+.. |++. ..|++.+...++-.+|.+++.+.. .. .| +.
T Consensus 170 yLv~~Ll~~l~~t~--------~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL-~~--~p~d~ 234 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQ--------RYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEAL-KE--NPQDS 234 (395)
T ss_pred HHHHHHHHHHhhcc--------cHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHH-Hh--CCCCH
Confidence 44556666777777 8999999999998775 6644 358888888899999999999887 33 33 43
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.....-...|.+.++.+.|.++.+++.+. .|+. .+|..|..+|.+.|+++.|.-.+..+.-
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 44444456688999999999999999875 5655 4999999999999999999999987753
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.45 E-value=0.003 Score=60.00 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=106.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 111 (442)
.+...|++++|+++++.- -+.......+..+.+.+ +++.|.+.++.|.+.. .|. +.+-|..++
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~--------R~dlA~k~l~~~~~~~--eD~-~l~qLa~aw 173 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMN--------RPDLAEKELKNMQQID--EDS-ILTQLAEAW 173 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT---------HHHHHHHHHHHHCCS--CCH-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC--CcH-HHHHHHHHH
Confidence 456679999998888642 34566666777777777 8999999999998653 343 333344433
Q ss_pred ----HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 013497 112 ----ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (442)
Q Consensus 112 ----~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 187 (442)
.-.+.+.+|..+|+++. . .+.++..+.|.+..++...|++++|.+++.+..+..- -+..|...+|.+....|+
T Consensus 174 v~l~~g~e~~~~A~y~f~El~-~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELS-D-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHH-C-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHhCchhHHHHHHHHHHHH-h-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCC
Confidence 33447899999999987 4 3567788888999999999999999999988765442 256677778888878887
Q ss_pred H-HHHHHHHHHHHhc
Q 013497 188 V-EKVYQYLQKLRST 201 (442)
Q Consensus 188 ~-~~a~~ll~~m~~~ 201 (442)
. +.+.+++.+++..
T Consensus 251 ~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 251 PTEAAERYLSQLKQS 265 (290)
T ss_dssp TCHHHHHHHHHCHHH
T ss_pred ChhHHHHHHHHHHHh
Confidence 7 7788888888764
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.41 E-value=0.02 Score=55.75 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=146.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcC---------------CC------------CCCchhhHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSA---------------TD------------PSSKDSALR 83 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~---------------~~------------~~~~~~~~~ 83 (442)
-+.+.|+++.|+++++-..+..-+.-...-|.|-. -|..+| ++ -..-.|.++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 47889999999999988876554433333343322 233333 11 112457889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC-CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 84 HGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 84 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
+|.+.|.+...+.-......||+=+.+ -+.|++++|++.|-.+- ++ .-+..+.--+.+.|-...+...|.+++..
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh---~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLH---AILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 999999888776555556666665544 45688999999887765 22 22445555666777778888888888754
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCC
Q 013497 163 MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGG 241 (442)
Q Consensus 163 M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p-~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~ 241 (442)
... -++.|.....-|-+.|-+.|+-..|++++-+- ....| +..|...|-..| ... ...+.++..+..
T Consensus 584 ~~s-lip~dp~ilskl~dlydqegdksqafq~~yds--yryfp~nie~iewl~ayy--idt-------qf~ekai~y~ek 651 (840)
T KOG2003|consen 584 ANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS--YRYFPCNIETIEWLAAYY--IDT-------QFSEKAINYFEK 651 (840)
T ss_pred hcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc--ccccCcchHHHHHHHHHH--Hhh-------HHHHHHHHHHHH
Confidence 432 23446677788888888899988888876543 22233 445555555555 322 223333333220
Q ss_pred cccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHH-hHHHHHHhhHHHHHHHHHHc
Q 013497 242 GWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAAL-AMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 242 ~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~-~~~g~~~~a~~~F~~m~~~~ 314 (442)
..-.-| +...|.-||..| -+.|....||+++++...+-
T Consensus 652 ---------------------aaliqp--------------~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 652 ---------------------AALIQP--------------NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred ---------------------HHhcCc--------------cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 001113 777899898764 46888999999999876644
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.40 E-value=0.052 Score=48.68 Aligned_cols=172 Identities=11% Similarity=0.012 Sum_probs=131.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+.--|=-+|...|+...|..-+++..+.. +-+..+|.++-..|...| ..+.|.+-|+........ +--..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~G--------e~~~A~e~YrkAlsl~p~-~GdVL 106 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLG--------ENDLADESYRKALSLAPN-NGDVL 106 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------ChhhHHHHHHHHHhcCCC-ccchh
Confidence 55566678999999999999999988753 223456666666899888 899999999987664322 33455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
|..=.-+|..|++++|...|++-......---..||..+--+..+.|+.+.|.+.|+.-.+..-. ...+.-.+.+...+
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~ 185 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYK 185 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHh
Confidence 66666789999999999999998722222223478999888899999999999999998876422 23456788888889
Q ss_pred cCCHHHHHHHHHHHHhccCCCChH
Q 013497 185 TGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.|++-.|..+++.....+. ++..
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~ 208 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAE 208 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHH
Confidence 9999999999988877654 4443
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.39 E-value=0.022 Score=55.77 Aligned_cols=160 Identities=15% Similarity=-0.035 Sum_probs=107.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSVA 108 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ty~~li 108 (442)
-..+...|++++|.+++++..+.. +-|...++.-+..+..+.. .+..+.+.+.++. .....|+ ......+-
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a 121 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDF-----SGMRDHVARVLPL--WAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhccc-----ccCchhHHHHHhc--cCcCCCCcHHHHHHHH
Confidence 334567899999999999987652 2233344421111111110 1144555555554 2223344 34555666
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHh
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGL-SLEQ--QEIAALLKVSAE 184 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~-~p~~--~ty~~li~~~~~ 184 (442)
..+...|++++|...+++.. .. .|+ ...+..+-..|...|++++|...++......- .|+. ..|..+...+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al-~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRAL-EL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHH-hh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 78899999999999999988 43 454 55677888899999999999999998776422 2333 345678888999
Q ss_pred cCCHHHHHHHHHHHHh
Q 013497 185 TGRVEKVYQYLQKLRS 200 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~ 200 (442)
.|+.++|..++++...
T Consensus 199 ~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 199 RGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999854
No 70
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.28 E-value=0.014 Score=64.06 Aligned_cols=130 Identities=16% Similarity=0.097 Sum_probs=68.9
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCH---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 22 PET--NFLINLQSCTKSKDLTTAISLYESAHS-QNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 22 p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~-~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
|+. .|-.-|.-....+++++|.++++++.. -+++-.. ..|.+++++-..-| .-+...++|++..+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--------~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--------TEESLKKVFERACQY 1526 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--------cHHHHHHHHHHHHHh
Confidence 555 688888888888888888888888652 2222111 34555555433333 233345555555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 96 NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 96 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
.- --..|..|...|.+.+..++|-++++.|..++| -....|...+..+.+..+.+.|.+++.+.
T Consensus 1527 cd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1527 CD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred cc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 11 123455555555555566666666665553333 23344555555555555555555544443
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.066 Score=50.34 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=74.9
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHHHHHHcCCH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEA 153 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~ 153 (442)
..|-+|+|+++|..+.+.|. .-....--|+..|-+..+|++|.++-++.. +.+=.+.. ..|.-|-..+....+.
T Consensus 119 ~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 34466666666666654332 233455566666666667777776666665 33211111 1122222223345566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccC
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEI-AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV 222 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty-~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~ 222 (442)
+.|.+++....+.+ |+.+-- -.+-+.....|++++|.+.++...+.....-+.+...|..+| ...
T Consensus 197 d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y--~~l 262 (389)
T COG2956 197 DRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY--AQL 262 (389)
T ss_pred HHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH--HHh
Confidence 66666666655442 222221 223344566777888887777777664444455666677777 444
No 72
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.0093 Score=60.71 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=90.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCCCchhhH-HHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQN--LRLSLHHFNALLYLCSDSATDPSSKDSAL-RHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g--~~p~~~ty~~ll~~~~~~~~~~~~~~~~~-~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
=.+|...++.++|.++|+..++.. ..-+...|++.|.-..+.- .+ -.|.++.+.+ +-...||-+
T Consensus 360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v--------~Ls~Laq~Li~~~-----~~sPesWca 426 (638)
T KOG1126|consen 360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV--------ALSYLAQDLIDTD-----PNSPESWCA 426 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH--------HHHHHHHHHHhhC-----CCCcHHHHH
Confidence 345555566666666666665431 1224456666665222211 00 0123333332 123467777
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL---KVS 182 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li---~~~ 182 (442)
+=++|.-.++.+.|++.|+.-. .+.| ...+|+.+=+-+....++|+|..-|+.-. ..|..-||++- -.|
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAi---Qldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAI---QLDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVY 499 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhh---ccCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhhe
Confidence 7778888888888888887766 3455 55677777777777778888888877654 34555555543 457
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~ 200 (442)
.|.++++.|.-.|++-.+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred eccchhhHHHHHHHhhhc
Confidence 778888888877776553
No 73
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.022 Score=57.81 Aligned_cols=170 Identities=12% Similarity=0.124 Sum_probs=129.5
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 19 NPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 19 ~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
...|.- .||.|-.++-..|++.+|+..|.+.....- --..+.+.|-..+...+ .+++|.++|....+-
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~--------~~e~A~~ly~~al~v- 383 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQG--------KIEEATRLYLKALEV- 383 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhc--------cchHHHHHHHHHHhh-
Confidence 344543 888888888889999999999988765421 12345666667777777 899999999877653
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HH
Q 013497 97 VIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE-QQ 173 (442)
Q Consensus 97 ~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ 173 (442)
-|. ...+|.|-..|-+.|++++|+.-+++.. .+.|+- -.|+.+=..|-..|+++.|...+.+.... .|. ..
T Consensus 384 -~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~Ae 457 (966)
T KOG4626|consen 384 -FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAE 457 (966)
T ss_pred -ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHH
Confidence 343 4678889999999999999999998877 467764 46777778888889999999888777654 343 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.++.|-..|-.+|++.+|..-+++-.+ +.||
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 678899999999999999998887654 3454
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.24 E-value=0.22 Score=48.14 Aligned_cols=123 Identities=7% Similarity=0.002 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-------ccHHHHHHHHHHcCCH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-------RTYDPALFCFCENLEA 153 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-------~ty~~li~~~~~~g~~ 153 (442)
+...|..-.++..+.+.. +........++|.+.|++.....++..|. +.|+--|. .+|+.+++-....+..
T Consensus 168 d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 168 DYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 344444444444433322 23334444455555555555555555554 43332222 3344444444444333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
+.-..-++....+ .+-+...-.+++.-+..+|+.++|.++..+-.+++..|.
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 3333333333222 122233334455555556666666666665555554444
No 75
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.21 E-value=0.022 Score=56.27 Aligned_cols=114 Identities=11% Similarity=0.009 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
-..-.+|++.+...++++.|.++|+++. +. .|+ ....|+..+...++-.+|.+++++.... .+-+......-.+
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~-~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLR-ER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAE 242 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHH-hc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 3445677888888999999999999999 54 355 4556888888889999999999988854 2336667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCChH-HHHHHHHHhccccCCC
Q 013497 181 VSAETGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWFSGQKVNG 224 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~li~~~~~~~~~~ 224 (442)
.|.+.++.+.|..+.++..+. .|+.. +|..|...| ...|.
T Consensus 243 fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Y--i~~~d 283 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECY--IQLGD 283 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHH--HhcCC
Confidence 899999999999999999765 67765 899999988 55543
No 76
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.16 E-value=0.11 Score=50.04 Aligned_cols=196 Identities=11% Similarity=0.019 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL-------HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 21 ~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~-------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
.+....+.....|.+.|++.+...+..+|.+.|+--++ .+|+.+|.=+...+ ..+.-...++...
T Consensus 185 r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~--------~~~gL~~~W~~~p 256 (400)
T COG3071 185 RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN--------GSEGLKTWWKNQP 256 (400)
T ss_pred CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc--------cchHHHHHHHhcc
Confidence 34447889999999999999999999999998864433 56777777444333 2222233343332
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH-HHCCCCCCH
Q 013497 94 SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM-GLMGLSLEQ 172 (442)
Q Consensus 94 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M-~~~g~~p~~ 172 (442)
.. .+-+...-.+++.-+.++|+.++|.+++++-. +.+..|++.+ .-.+.+-++.+.-.+..+.- ..++..|
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 21 23344555688888999999999999999988 7766676322 23345667766666665553 3446555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHH
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAV 236 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~ 236 (442)
..+.+|=.-|.+.+.+.+|.+.|+.-. ...|+..+|+.+-++| .+.|...-....-.++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~--~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADAL--DQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHH--HHcCChHHHHHHHHHHH
Confidence 567788888999999999999998444 4578999999999999 66644433333333444
No 77
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.011 Score=56.12 Aligned_cols=145 Identities=10% Similarity=0.076 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 137 (442)
.+|..++..+.+.+ .++.|..+|.+.++.+ +..++....++|.-+ ..++.+.|..+|+...+. +..+.
T Consensus 2 ~v~i~~m~~~~r~~--------g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~ 70 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE--------GIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-H
T ss_pred HHHHHHHHHHHHhC--------ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCH
Confidence 45666677666665 6777777777776543 234444444444332 234566677777776622 33455
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHH
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE---QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li 214 (442)
..|..-|..+.+.|+.+.|..||+..... +.++ ...|..+|+.=.+.|+++.+..+..++.+. .|+..+...++
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 56667777777777777777777777654 2222 247778887777788888888888877764 45544444444
Q ss_pred HHh
Q 013497 215 DWF 217 (442)
Q Consensus 215 ~~~ 217 (442)
+-|
T Consensus 148 ~ry 150 (280)
T PF05843_consen 148 DRY 150 (280)
T ss_dssp CCT
T ss_pred HHh
Confidence 444
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.06 E-value=0.042 Score=58.45 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=109.0
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 157 (442)
..+..++|+++|.+...... -|..+-|-+--.++.+|++.+|..+|.+.. +... -+.-+|-.+-++|...|++..|.
T Consensus 624 ~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVr-Ea~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVR-EATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHH-HHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 34578899999999877643 478888888889999999999999999998 5432 34567889999999999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhc
Q 013497 158 EVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (442)
Q Consensus 158 ~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~ 218 (442)
++|+..... .-.-+....+.|-+++-++|.+.+|.+.+..-+.....-....+|..+-.+.
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 999986554 5566778889999999999999999998877765533333345566655553
No 79
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.05 E-value=0.031 Score=47.21 Aligned_cols=125 Identities=13% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH--HHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHH-FNALL--YLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~t-y~~ll--~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.|..++..+. .++...+...++.+.+..- -+... ...|. ..+...| ++++|...|+........|+.
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g--------~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQG--------DYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCHHH
Confidence 5666666664 6677777777777665422 11122 22221 1344445 677777777777666533321
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 102 --ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 102 --~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
...-.|...+...|++++|+..++... .... ....+...=..|.+.|+.++|...|+.
T Consensus 84 ~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 84 KPLARLRLARILLQQGQYDEALATLQQIP-DEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhcc-Ccch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233345566677777777777776644 3322 223444555667777777777776654
No 80
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.25 Score=48.49 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=110.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 013497 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAAS 113 (442)
Q Consensus 35 k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~ 113 (442)
-+|++++|.+.|++.....-.-....||.=|.+ ...+ ++++|++.|-.+.. +. -++...-.+.+.|-.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~--------~ldeald~f~klh~--il~nn~evl~qianiye~ 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALG--------NLDEALDCFLKLHA--ILLNNAEVLVQIANIYEL 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhc--------CHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHH
Confidence 378999999999988866543344445544433 2233 68888888876532 22 245556667777777
Q ss_pred cCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVY 192 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~ 192 (442)
..+...|.+++.+.. .+.| |....+-|-..|-+.|+-..|++.+.+--. -++-+..|..-|-..|......+++.
T Consensus 571 led~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 571 LEDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred hhCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 888888888886554 3344 556777788888888888888876554322 12334556566666777777788888
Q ss_pred HHHHHHHhccCCCChHHHHHHHHHh
Q 013497 193 QYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 193 ~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+|++- .-++|+.+-|..++..|
T Consensus 647 ~y~eka--aliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 647 NYFEKA--ALIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHH--HhcCccHHHHHHHHHHH
Confidence 887754 34578888887777666
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.00 E-value=0.059 Score=48.19 Aligned_cols=130 Identities=9% Similarity=0.091 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHH-HHHcCC--HHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFC-FCENLE--AEKA 156 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~-~~~~g~--~~~A 156 (442)
..+++...++...+.. +.|...|..+-..|...|++++|...|+... . +.| +...+..+-.+ |...|+ .++|
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL-Q--LRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 6777888887766654 4588999999999999999999999999887 4 345 45666666665 467777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 157 YEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 157 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+++++..+..-. +...+..+-..+.+.|++++|...++++.+. ..|+...+..| ...
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~i 187 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV-ESI 187 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH-HHH
Confidence 9999999887543 6677888888899999999999999999765 34555555544 444
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.00 E-value=0.32 Score=50.06 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
++.-+...|-..|+.++|++++++.. .. .|+ +-.|..--..|-+.|++++|.+..+........ |...=+-....
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI-~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAI-EH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHH
Confidence 33444566777888888888888776 33 555 345666667777888888888888877765543 55555566677
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+.++|++++|.+++...-+.+..|-......=.-||
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 778888888888887776665544444555555555
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.99 E-value=0.12 Score=51.30 Aligned_cols=160 Identities=13% Similarity=0.086 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-HH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ 102 (442)
-|..-|.-| ..|..++|+..++.+... .|+-.-|..+.. .+...+ +..+|.+.++.+... .|+ ..
T Consensus 309 ~YG~A~~~~-~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l--~P~~~~ 375 (484)
T COG4783 309 QYGRALQTY-LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEAN--------KAKEAIERLKKALAL--DPNSPL 375 (484)
T ss_pred HHHHHHHHH-HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhc--CCCccH
Confidence 444444433 245666666666665433 455555555544 555555 566666666665543 233 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
..-.+-.+|.+.|++.+|..++..-. . ..+-|...|..|-.+|...|+..+|..-..+ +|
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~-~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~ 435 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYL-F-NDPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GY 435 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh-h-cCCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HH
Confidence 34444556666666666666666554 2 2344556666666666666666555443332 33
Q ss_pred HhcCCHHHHHHHHHHHHhc--cCCCChHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRST--VRCVNEETGKIIEDWF 217 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~--~~~p~~~t~~~li~~~ 217 (442)
.-.|+++.|...+..-.+. ...|+-.-+...|+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 4466666666666655543 2334444555555555
No 84
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.13 Score=50.91 Aligned_cols=150 Identities=9% Similarity=0.017 Sum_probs=107.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 36 SKDLTTAISLYESAHSQNLRLSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
.|+..+|..-|+......-.++. +.+-++ +|.... +.++.+..|+........ |.-+|--=-..+.-.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~--~y~d~~--------~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL 407 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAA--AYADEN--------QSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLL 407 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHH--HHhhhh--------ccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHH
Confidence 58888999999988766544443 222222 444444 677888889887765543 344455444555556
Q ss_pred CCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 193 (442)
+++++|..=|++.. . +.| +...|--+--+.-+.+.+++++..|++...+ ++.....||..-..+...+++++|.+
T Consensus 408 ~q~e~A~aDF~Kai-~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 408 QQYEEAIADFQKAI-S--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHh-h--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 78999999999887 3 345 3445555555556888999999999998765 45567789999999999999999999
Q ss_pred HHHHHHh
Q 013497 194 YLQKLRS 200 (442)
Q Consensus 194 ll~~m~~ 200 (442)
.++.-++
T Consensus 484 ~YD~ai~ 490 (606)
T KOG0547|consen 484 QYDKAIE 490 (606)
T ss_pred HHHHHHh
Confidence 9987654
No 85
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.042 Score=50.23 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=39.6
Q ss_pred HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 013497 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC----ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (442)
Q Consensus 112 ~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~----~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 187 (442)
.+..+++-|.+.++.|. .- -+-.|.+-|..++. ..+.+.+|+-+|++|.++ ..|+..+.|.+..++...|+
T Consensus 148 lk~~r~d~A~~~lk~mq-~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQ-QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHH-cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 34445555555555555 21 12233333333322 233455555555555432 34555555555555555555
Q ss_pred HHHHHHHHHHHHhc
Q 013497 188 VEKVYQYLQKLRST 201 (442)
Q Consensus 188 ~~~a~~ll~~m~~~ 201 (442)
+++|..++++...+
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555443
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.94 E-value=0.039 Score=45.59 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
+......+...+.+.|+.++|.+.|+... ..+ ..+...|..+-..|.+.|++++|..+++.....+ ..+...+..+-
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLA-AYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence 34556677788899999999999999987 432 3366788888899999999999999999887664 33567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChHHHH
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEETGK 211 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 211 (442)
..+...|+.++|...|++..+. .|+...+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8899999999999999888765 45554443
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.90 E-value=0.038 Score=46.64 Aligned_cols=116 Identities=12% Similarity=-0.021 Sum_probs=89.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 86 FRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
..+|++-.+ ..|+. +..+-..+...|++++|...|.... ... ..+...|..+-..+.+.|++++|...|+....
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV-MAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445555443 23443 5566778899999999999999987 432 33667888888999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHH
Q 013497 166 MGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 166 ~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
.. +.+...+..+-.++...|+.++|...|+..... .|+...+
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 53 336778888889999999999999999988764 4554433
No 88
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.86 E-value=0.062 Score=44.36 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|.+.|+.....+ +.+...+..+-..+.+.|++++|..+++... ... ..+..++..+-..|...|+.++|...|
T Consensus 32 ~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 32 RYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD-PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666555433 2244555555556666666666666666554 221 223344445555566666666666666
Q ss_pred HHHHH
Q 013497 161 EHMGL 165 (442)
Q Consensus 161 ~~M~~ 165 (442)
+...+
T Consensus 109 ~~al~ 113 (135)
T TIGR02552 109 DLAIE 113 (135)
T ss_pred HHHHH
Confidence 55554
No 89
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.85 E-value=0.039 Score=52.28 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEF-NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
+.+|..+++..-+.+..+.|..+|.+.. .. .+...+....++|. |...++.+.|..||+..... +..+...|...|
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~-~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRAR-KDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHH-cCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 3578899999999999999999999988 43 34455555555554 33457788899999998865 455778889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 013497 180 KVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+.+.+.++.+.|..+|++....
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHHHHhCcHHHHHHHHHHHHHh
Confidence 9999999999999999988765
No 90
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.82 E-value=0.013 Score=48.23 Aligned_cols=97 Identities=9% Similarity=0.055 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
|+.++.++|-++++.|+++....+++.. .|+.++... ..+. .-....+.|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHH
Confidence 5678889999999999999998888653 355543311 0000 123457889999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHh
Q 013497 180 KVSAETGRVEKVYQYLQKLRS-TVRCVNEETGKIIEDWF 217 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~-~~~~p~~~t~~~li~~~ 217 (442)
.+|+..|++..|.++++...+ .++..+..+|..|+.|.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999988754 57888888999998887
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.80 E-value=0.056 Score=45.59 Aligned_cols=127 Identities=11% Similarity=0.020 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
..|..++.....+ ....+.+.++.+......-. ....-.+-..+...|++++|...|+... ...-.|.
T Consensus 13 ~~y~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQALQAG---------DPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPE 82 (145)
T ss_pred HHHHHHHHHHHCC---------CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHH
Confidence 4556666655533 57888888998887643211 2222334477889999999999999998 5542232
Q ss_pred c--ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 137 L--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 137 ~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
. ...-.|...+...|++++|...++....... ....+..+-+.|.+.|+.++|...|+.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 2344466778899999999999977544333 334556677789999999999998864
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.75 E-value=0.1 Score=46.60 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC
Q 013497 38 DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARL-AASKND 116 (442)
Q Consensus 38 ~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~ 116 (442)
+.+++...+....+.. +.|...|..|-.++...+ ++++|...|+...+... -|...+..+-.+ +...|+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g--------~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN--------DYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQ 123 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCC
Confidence 3344555555444332 346667777766787777 99999999999887653 367778888776 467777
Q ss_pred --HHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 117 --GDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 117 --~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
.++|.+++++.. +. .| +..++..+-..+.+.|++++|...|+.+.+.. .|+..-+ .+|+.
T Consensus 124 ~~~~~A~~~l~~al-~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 124 HMTPQTREMIDKAL-AL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred CCcHHHHHHHHHHH-Hh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH-HHHHH
Confidence 599999999988 43 44 66888888899999999999999999998753 4455444 34454
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.72 E-value=0.025 Score=42.14 Aligned_cols=93 Identities=16% Similarity=0.069 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
+..+...+...|++++|..++++.. .. .| +...+..+...+...|++++|.+.++....... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKAL-EL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHH-hc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHH
Confidence 4556677788889999999998877 33 33 336677778888888999999998888776532 2345777788888
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~ 200 (442)
...|+.++|...+.+..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 888899998888877654
No 94
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.26 Score=48.58 Aligned_cols=178 Identities=12% Similarity=0.060 Sum_probs=137.7
Q ss_pred hcCCHHHHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC-----------C------------CCCCchhhHHHHHHHH
Q 013497 35 KSKDLTTAISLYESAHSQN-LR-LSLHHFNALLYLCSDSA-----------T------------DPSSKDSALRHGFRVF 89 (442)
Q Consensus 35 k~g~~~~A~~lf~~m~~~g-~~-p~~~ty~~ll~~~~~~~-----------~------------~~~~~~~~~~~a~~l~ 89 (442)
...|+++|+++|+++++.. .+ -|..+|+.+|..-.... + +=|+-.+..++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 4578999999999999774 12 26688888875332211 1 1234556889999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 90 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
+...+.+.. -...||.+=+-|....+...|.+-++... +- .+-|-+.|=.|=++|.-.+...=|+-.|++..... +
T Consensus 354 kRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-di-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-P 429 (559)
T KOG1155|consen 354 KRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV-DI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-P 429 (559)
T ss_pred HHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH-hc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-C
Confidence 998776543 46788888899999999999999999887 43 24477899999999999999999998888876542 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 170 LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 170 p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
-|...|.+|-++|.+.++.++|.+.|..-...+.. +...+..|-..+
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 37889999999999999999999999988876543 556667777777
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.70 E-value=0.065 Score=45.20 Aligned_cols=91 Identities=10% Similarity=-0.068 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|...|+....... .+..+|..+-.++.+.|++++|...|+... ... ..+...+..+-.++.+.|+.++|...|
T Consensus 39 ~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHAL-MLD-ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999877643 478889999999999999999999999998 532 336688888889999999999999999
Q ss_pred HHHHHCCCCCCHHHHH
Q 013497 161 EHMGLMGLSLEQQEIA 176 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~ 176 (442)
+..... .|+...|.
T Consensus 116 ~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 116 QTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHh--CCCChHHH
Confidence 998764 46554444
No 96
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.64 E-value=0.16 Score=56.17 Aligned_cols=168 Identities=12% Similarity=0.048 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|.++++.-.-.|.-+...++|+++.+..- .-..|..|+..|.+.. ..++|-++|+.|.++-- -....|
T Consensus 1499 iWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~iy~k~e--------k~~~A~ell~~m~KKF~-q~~~vW 1567 (1710)
T KOG1070|consen 1499 IWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLGIYEKSE--------KNDEADELLRLMLKKFG-QTRKVW 1567 (1710)
T ss_pred HHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhh--------cchhHHHHHHHHHHHhc-chhhHH
Confidence 788888888888988999999999986532 2256777777888888 89999999999987643 466789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
...+..+.+..+-+.|..++.+.. . +.|.. ....-.+..-.+.|+.+.+..+|+.....--+ -...|+.+|+.
T Consensus 1568 ~~y~~fLl~~ne~~aa~~lL~rAL-~--~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRAL-K--SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDM 1643 (1710)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH-h--hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHH
Confidence 999999999999999999998876 3 46652 23344445556899999999999998875322 45689999999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
=.+.|+.+.+.++|++....++.|-.
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCChhH
Confidence 99999999999999999988877664
No 97
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.63 E-value=0.026 Score=46.34 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=43.9
Q ss_pred CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 013497 131 FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 131 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~li~~~~~ 184 (442)
..+.|+..+-.+++.+|+..|++..|+++.+...+. ++..+..+|..|++-+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456788888899999999999999999988887655 788788888888886544
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.62 E-value=0.16 Score=54.17 Aligned_cols=131 Identities=9% Similarity=-0.078 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
++..+-.|-.+-...| .+++|..+++...+.. +-++.....+...+.+.+++++|+..++... .. .|+
T Consensus 85 ~~~~~~~La~i~~~~g--------~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~--~p~ 152 (694)
T PRK15179 85 TELFQVLVARALEAAH--------RSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SG--GSS 152 (694)
T ss_pred cHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hc--CCC
Confidence 3444444444555555 8999999999887653 2256777888889999999999999998887 43 565
Q ss_pred c-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 137 L-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 137 ~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
. .....+-.++.+.|++++|.++|++....+ .-+..++..+-.++-+.|+.++|...|++-.+
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 455666677888999999999999998733 22477888888888889999999888887754
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.57 E-value=0.46 Score=46.33 Aligned_cols=168 Identities=8% Similarity=-0.038 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC-CCCH--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-IPNE-- 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-~p~~-- 101 (442)
.+..+-..+...|++++|...+++..+.. +.+...+..+-..+...| ++++|.+.++....... .|+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g--------~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG--------RFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC--------CHHHHHHHHHhhhhccCCCcchhH
Confidence 33445567788999999999999988754 233455555555777777 89999999998766432 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC-CCCcccH-H--HHHHHHHHcCCHHHHHHH--HHHHHHCCCCCCHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTY-D--PALFCFCENLEAEKAYEV--EEHMGLMGLSLEQQEI 175 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~ty-~--~li~~~~~~g~~~~A~~l--~~~M~~~g~~p~~~ty 175 (442)
..|..+...+...|+.++|..++++.. .... .+..... + .++.-+-..|..+.+.+. ...............+
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~ 265 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAF 265 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchH
Confidence 345678888999999999999999976 3221 1222111 1 333334445543333332 1111111111111222
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 176 A--ALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 176 ~--~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
+ ....++...|+.++|..++..++...
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 45666778999999999999987743
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.54 E-value=1 Score=47.98 Aligned_cols=185 Identities=12% Similarity=0.023 Sum_probs=119.9
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
..|+. .+.---..+++ |++++|.+++.+..+.. +.+...|-+|=..|...| +.+++...+-..--. .
T Consensus 135 l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG--------d~eK~l~~~llAAHL-~ 203 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG--------DIEKALNFWLLAAHL-N 203 (895)
T ss_pred cCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc--------cHHHHHHHHHHHHhc-C
Confidence 44544 45555555666 99999999999987654 346678888887888887 777777655433222 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
+-|---|-.+-....+.|+++.|.-.|.+.. +.. .++...+--=...|-+.|+...|.+-|.+|....-.-|..-+..
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAI-QAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHH-hcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3356778888888888888888888888877 432 34544445556677788888888888888876532222222223
Q ss_pred H----HHHHHhcCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHh
Q 013497 178 L----LKVSAETGRVEKVYQYLQKLRS-TVRCVNEETGKIIEDWF 217 (442)
Q Consensus 178 l----i~~~~~~g~~~~a~~ll~~m~~-~~~~p~~~t~~~li~~~ 217 (442)
+ +..+...++.+.|.+.|..-.. .+-..+...++++...|
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 3 4445556666777777765544 23334444555555555
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=0.25 Score=45.33 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=85.9
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS----KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 153 (442)
+..+++-|.+.++.|.+- -+..|.+-|..++.+ .+.+.+|+-+|++|. + +..|+.-+-|-...++...|++
T Consensus 149 k~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCH
Confidence 445778888888888653 356777756555544 567899999999998 3 3688899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhc
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRV-EKVYQYLQKLRST 201 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~-~~a~~ll~~m~~~ 201 (442)
++|..++++...+.-. +..|...+|-.-...|.. +-..+.+.+++..
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999877543 566666666666566654 3345566666543
No 102
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.42 E-value=0.095 Score=38.85 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSV 107 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~l 107 (442)
.+...+...|++++|+.+|.++.+..- .+...+..+-..+...+ ++++|.+.|+....... .+..++..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~-~~~~~~~~~ 74 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLG--------KYEEALEDYEKALELDP-DNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCC-cchhHHHHH
Confidence 344445555666666666665544321 11223333333333333 55555555555444321 222445555
Q ss_pred HHHHHhcCCHHHHHHHHHHhH
Q 013497 108 ARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~ 128 (442)
...+...|+.++|...+....
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555555543
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.36 E-value=0.093 Score=41.90 Aligned_cols=96 Identities=14% Similarity=-0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLMG--LSLEQQEIA 176 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--~~p~~~ty~ 176 (442)
++-.+...+.+.|++++|.+.|..+. .. .|+. ..+..+...+.+.|+++.|...|+...... .......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFL-KK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 45667777888999999999999987 43 2332 355668888999999999999999987642 111245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 177 ALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.+...+.+.|+.++|...+.++...
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7778888999999999999998876
No 104
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.22 Score=49.15 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
|..++-+-|+-.++.++|+..|++..+.+-+ ....|+.+=+=|..-. +...|.+-|+...+-. +.|-..|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmK--------Nt~AAi~sYRrAvdi~-p~DyRAW 401 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMK--------NTHAAIESYRRAVDIN-PRDYRAW 401 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhc--------ccHHHHHHHHHHHhcC-chhHHHH
Confidence 3444555677788999999999998865421 2244544444677666 7888999999887654 3488899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
-.|=.+|.-.+.+.-|+-.|++.. .++| |.+.|.+|=.+|.+.+++++|.+-|......|-. +...|..|-+.|-
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye 477 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYE 477 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 999999999999999999999877 3466 6799999999999999999999999998877644 5578999999999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~ 200 (442)
+.++.++|...+.+-.+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999998877655
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.27 E-value=0.31 Score=52.04 Aligned_cols=140 Identities=9% Similarity=0.009 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALL-YLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll-~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.+-.|-....+.|..++|..+++...+. .|+....-... ..+.+.+ ++++|+..+++....... +...
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~--------~~eeA~~~~~~~l~~~p~-~~~~ 156 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQ--------GIEAGRAEIELYFSGGSS-SARE 156 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhc--------cHHHHHHHHHHHhhcCCC-CHHH
Confidence 6777778888899999999999998764 67665544444 4777777 999999999998876432 5667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
.+.+-.++.+.|+.++|..+|++.. .. .|+ ..++..+-.++-..|+.++|...|+...+. ..|...-|+.++
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~-~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLS-RQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 7788889999999999999999998 53 344 678888888899999999999999998754 233445555444
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.22 E-value=1.7 Score=46.44 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=113.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNL--RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~--~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 109 (442)
++......+.+..+.....+.++ .-++..|--+-.++...+ ++..|.++|..+...-.--+.+.|--+-+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~--------~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIG--------KYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcc--------cHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 34444444445555555555553 334455666666888888 99999999999988766667889999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHH
Q 013497 110 LAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMG--------LMGLSLEQQEIAALLK 180 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~--------~~g~~p~~~ty~~li~ 180 (442)
+|-..|..++|.+.++... . ..|+. -.=-+|-..+-+.|+.++|.++++.|. ..+..|+...---..+
T Consensus 458 c~~~l~e~e~A~e~y~kvl-~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d 534 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVL-I--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD 534 (895)
T ss_pred HHHHHhhHHHHHHHHHHHH-h--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence 9999999999999999988 3 35543 233445566778999999999999964 2234555555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 013497 181 VSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~m~~ 200 (442)
.+...|+.++-......|..
T Consensus 535 ~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 535 ILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 77788888887666666654
No 107
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.17 E-value=0.22 Score=43.22 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIA 176 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~ 176 (442)
....|..+-..+...|++++|...|++.. ...-.|. ...+..+-..|.+.|+.++|.+.+++.... .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEAL-KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHH
Confidence 34567777788888999999999999887 4322221 357888888899999999999999888764 23 345555
Q ss_pred HHHHHHHhcCC--------------HHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 177 ALLKVSAETGR--------------VEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 177 ~li~~~~~~g~--------------~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+...+...|+ +++|.+++.+... .++..|..++.|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~ 161 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWL 161 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHH
Confidence 66666666655 3455555555443 4555577888888
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.15 E-value=0.13 Score=51.48 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 013497 39 LTTAISLYESAHS-QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKND 116 (442)
Q Consensus 39 ~~~A~~lf~~m~~-~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~ 116 (442)
.+...+.++++.. ..+.|+ .+|..+|+.-.+.. .++.|..+|.+..+.+..+ +++.++++|.-||. ++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~e--------GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD 416 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAE--------GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KD 416 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhh--------hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CC
Confidence 5566666776653 345555 56777788555554 5888999999998888877 88899999988886 57
Q ss_pred HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 013497 117 GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ--QEIAALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 117 ~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~a~~l 194 (442)
.+-|.++|+--....|-.| .--..-+.-+..-++=..|..+|+.....++.||. ..|..+|+.=.+-|++..+.++
T Consensus 417 ~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 417 KETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred hhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 7889999987542444222 23345677777888888899999999888776654 6899999998899999998888
Q ss_pred HHHHHh
Q 013497 195 LQKLRS 200 (442)
Q Consensus 195 l~~m~~ 200 (442)
-+++..
T Consensus 495 ekR~~~ 500 (656)
T KOG1914|consen 495 EKRRFT 500 (656)
T ss_pred HHHHHH
Confidence 877754
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.09 E-value=0.6 Score=42.60 Aligned_cols=99 Identities=8% Similarity=0.017 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH-H
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLMGLS-LEQ-Q 173 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~-p~~-~ 173 (442)
....+-.+...+...|++++|...|++.. .. .|+. .++..+-.+|.+.|++++|...++.+.+..-. |.. .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALE-SR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 45566677777888889999998888877 32 3432 35566677888889999999998888764321 111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 013497 174 EIAALLKVSAET--------GRVEKVYQYLQKLRST 201 (442)
Q Consensus 174 ty~~li~~~~~~--------g~~~~a~~ll~~m~~~ 201 (442)
++..+-.++.+. |+.++|.+.|++....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 233333334333 6778888888888654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.08 E-value=0.15 Score=52.97 Aligned_cols=186 Identities=10% Similarity=0.006 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------------------CCCCCchhhHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA--------------------TDPSSKDSALRH 84 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~--------------------~~~~~~~~~~~~ 84 (442)
.|.-+|.+|+..|+..+|..+..+-.+ -+||+.-|..|........ .....+.+++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 577789999999999999888877665 4688888888755332211 011223456777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
+.+.|+.-.+... .-..||=.+=.+..+.+++..|.+-|..-. ...||. ..||.+-.+|.+.|+-.+|+..+.+-
T Consensus 504 ~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 504 ADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 7777765433221 123455555556677889999999998877 346765 67999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCChHHHHHHHHHh
Q 013497 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR-CVNEETGKIIEDWF 217 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~-~p~~~t~~~li~~~ 217 (442)
.+.+ .-+...|...+-...+.|.+++|.+.+++|..... .-+...-..++...
T Consensus 580 lKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 580 LKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 9888 44667788888889999999999999998865321 12444444444443
No 111
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.07 E-value=0.16 Score=47.92 Aligned_cols=167 Identities=9% Similarity=0.027 Sum_probs=130.7
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 22 PET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 22 p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
|-. ||-.|-..|.+....+.|+.+|.+-.+. .|-.+||-.=+. .+..-+ ..++|.++|....+.- +-
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~--------~~~~a~~lYk~vlk~~-~~ 322 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME--------QQEDALQLYKLVLKLH-PI 322 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH--------hHHHHHHHHHHHHhcC-Cc
Confidence 444 8999999999999999999999987654 566677765554 555555 7899999999876642 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ--QEIAA 177 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~ 177 (442)
|+.....+-.+|.-.++++.|+..++.+. .-|+. +...|+.+--+|.-.+++|-++--|......--.|+. ..|-.
T Consensus 323 nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYN 400 (478)
T KOG1129|consen 323 NVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYN 400 (478)
T ss_pred cceeeeeeeeccccCCChHHHHHHHHHHH-HhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhc
Confidence 67777788888999999999999999999 78865 5667888878888899999999988887765444443 35666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
|-...+..|++..|.+.|+--..+
T Consensus 401 lg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 401 LGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred cceeEEeccchHHHHHHHHHHhcc
Confidence 666677899999999999876654
No 112
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.99 E-value=0.016 Score=43.87 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhHhhCCCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVP---RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEIAALLKVSAETGRVEK 190 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~ 190 (442)
|+++.|+.+++.+. .. .| +...+-.+-.+|.+.|+.++|.++++. .. ..|+. ...-.+-.++.+.|++++
T Consensus 3 ~~y~~Ai~~~~k~~-~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLL-EL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHH-HH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHH-HH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 45555666665555 22 22 222233345555566666666666555 11 11111 222233444555666666
Q ss_pred HHHHHH
Q 013497 191 VYQYLQ 196 (442)
Q Consensus 191 a~~ll~ 196 (442)
|.++|.
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665554
No 113
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.95 E-value=0.26 Score=39.27 Aligned_cols=84 Identities=10% Similarity=-0.073 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHHHHHcCCHH
Q 013497 81 ALRHGFRVFDQMLSNNVI--PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLEAE 154 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~ 154 (442)
++++|.+.|+.+...... .....+..+...+.+.|++++|...|+... .. .|+ ..++..+..++.+.|+.+
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~~~~~~~~~~~~~~~~~ 93 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-KK--YPKSPKAPDALLKLGMSLQELGDKE 93 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-HH--CCCCCcccHHHHHHHHHHHHhCChH
Confidence 899999999999865321 124466778999999999999999999987 32 243 345777778899999999
Q ss_pred HHHHHHHHHHHCC
Q 013497 155 KAYEVEEHMGLMG 167 (442)
Q Consensus 155 ~A~~l~~~M~~~g 167 (442)
+|...++++....
T Consensus 94 ~A~~~~~~~~~~~ 106 (119)
T TIGR02795 94 KAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999998764
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.91 E-value=0.36 Score=44.17 Aligned_cols=160 Identities=8% Similarity=-0.081 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
.-+=..+--.|+-+.+..+........ .-|...-+.+...-.+.| ++..|...|.+.... -++|..+||.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g--------~~~~A~~~~rkA~~l-~p~d~~~~~~ 139 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNG--------NFGEAVSVLRKAARL-APTDWEAWNL 139 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhc--------chHHHHHHHHHHhcc-CCCChhhhhH
Confidence 444455666777777777766644221 224444555666666666 899999999987654 4678999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 185 (442)
+=-+|-+.|+.++|..-|.+-. + +.| +...+|.|--.|.-.|+.+.|..++..-...+.. |...-..|.-.....
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl-~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~ 215 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQAL-E--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHH-H--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhc
Confidence 9999999999999999998877 4 344 3467888888899999999999999998877654 455557777788889
Q ss_pred CCHHHHHHHHHHHHh
Q 013497 186 GRVEKVYQYLQKLRS 200 (442)
Q Consensus 186 g~~~~a~~ll~~m~~ 200 (442)
|++++|.++...-..
T Consensus 216 g~~~~A~~i~~~e~~ 230 (257)
T COG5010 216 GDFREAEDIAVQELL 230 (257)
T ss_pred CChHHHHhhcccccc
Confidence 999999988765543
No 115
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=0.33 Score=48.20 Aligned_cols=114 Identities=11% Similarity=0.139 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHH----HHHcCC
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFC----FCENLE 152 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~----~~~~g~ 152 (442)
++++++..|++.+++- +--...||-.-..+...++++.|.+.|+... + +.|+ .+.-.++|+- +--.++
T Consensus 443 k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai-~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAI-E--LEPREHLIIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHH-h--hccccccccccchhhhhhhHhhhchhhh
Confidence 4555555555554442 2233445555555555555555555555544 2 1222 0111111110 001255
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 153 AEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 153 ~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
+..|.++++...+..-+ ....|.+|-..-.+.|++++|.++|++-.
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555443221 34456666666667777777777776544
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.77 E-value=1.6 Score=43.47 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+...+.+.-....-..+-.++.+-.+. .-...-|..-+..+..+ .++.|+..++.+... .+-|..-.
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~~~~~---------~~d~A~~~l~~L~~~-~P~N~~~~ 343 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQTYLAG---------QYDEALKLLQPLIAA-QPDNPYYL 343 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHHHHhc---------ccchHHHHHHHHHHh-CCCCHHHH
Confidence 5555555544444333343333332221 22345566666655444 688899999997655 33466667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
......+.+.++.++|.+.++.+. . ..|+. ...-.+-.+|.+.|+..+|..+++.-... .+-|...|..|-.+|.
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal-~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~ 419 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKAL-A--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH-h--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHH
Confidence 777789999999999999999988 4 36763 44555668889999999999999887654 3457889999999999
Q ss_pred hcCCHHHHHHHHHHHH
Q 013497 184 ETGRVEKVYQYLQKLR 199 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~ 199 (442)
..|+..++..-.-+.-
T Consensus 420 ~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 420 ELGNRAEALLARAEGY 435 (484)
T ss_pred HhCchHHHHHHHHHHH
Confidence 9999988877665553
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.71 E-value=0.95 Score=41.46 Aligned_cols=124 Identities=6% Similarity=-0.050 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
.-+.+..+...... ...-|....++.+....+.|++.+|...|.+.. . .-.||..+||.+=-+|-+.|+.+.|..-|
T Consensus 81 ~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 81 DADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-R-LAPTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred cccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-c-cCCCChhhhhHHHHHHHHccChhHHHHHH
Confidence 34445555444322 123355566779999999999999999999987 4 34789999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.+..+.-.. +...+|.|--.|.-.|+.+.|..++..-...+-..+.+
T Consensus 158 ~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 158 RQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred HHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 887765221 34456777777778999999999999888765443333
No 118
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.69 E-value=0.31 Score=47.95 Aligned_cols=144 Identities=14% Similarity=0.137 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 137 (442)
.+|.++|+.-.+.. .++.|..+|-+..+.| +.+++..++++|.-+|. |+..-|..+|+--. .. -||.
T Consensus 398 ~v~C~~~N~v~r~~--------Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl-~~--f~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKR--------GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGL-LK--FPDS 465 (660)
T ss_pred hHHHHHHHHHHHHh--------hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHH-Hh--CCCc
Confidence 56777888555544 5999999999999999 67999999999999886 67888999998754 22 3555
Q ss_pred ccH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHH
Q 013497 138 RTY-DPALFCFCENLEAEKAYEVEEHMGLMGLSLE--QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (442)
Q Consensus 138 ~ty-~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li 214 (442)
..| +-.+.-+..-++-+.|..+|+.-.+. +.-+ ...|..+|+.=.+-|++..|..+=++|+.. .|...+..+..
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 444 45677778899999999999944332 1112 357999999999999999999999988765 67777777766
Q ss_pred HHh
Q 013497 215 DWF 217 (442)
Q Consensus 215 ~~~ 217 (442)
+-|
T Consensus 543 Sry 545 (660)
T COG5107 543 SRY 545 (660)
T ss_pred HHH
Confidence 666
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.69 E-value=0.57 Score=47.19 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 013497 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGD 118 (442)
Q Consensus 39 ~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~ 118 (442)
.++|.++++...+.-.+-+..+|..+-. +.....+.. ..+.....++.....-..--+.+|-.+|+.--+..-+.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~-~eE~~~~~n----~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALAD-YEESRYDDN----KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHhcccc----hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHH
Confidence 6888888888665444557778877755 222211111 46667777777765433333467888999999999999
Q ss_pred HHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 119 YAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEH-MGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 119 ~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~-M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~ 196 (442)
.|..+|.+.. +.+..+ +++.++++|.-||. ++.+.|+++|+- |...|-.| .--...++.+...++-..+.-+|+
T Consensus 384 aaR~iF~kaR-~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 384 AARKIFKKAR-EDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHHHHHHh-hccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHH
Confidence 9999999999 777777 88999999998875 778999999987 44444332 223578888999999999999999
Q ss_pred HHHhccCCCCh--HHHHHHHHHh
Q 013497 197 KLRSTVRCVNE--ETGKIIEDWF 217 (442)
Q Consensus 197 ~m~~~~~~p~~--~t~~~li~~~ 217 (442)
+....++.|+. ..|..+++.=
T Consensus 460 r~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 460 RVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHhccCChhhhHHHHHHHHHHH
Confidence 99998777665 4787777644
No 120
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.19 Score=53.66 Aligned_cols=158 Identities=12% Similarity=0.072 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013497 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND 116 (442)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 116 (442)
+..+.|+++|.+..+..- -|.+.=|-+=-.++..| ++.+|.+||.+..+.... +.-+|-.+-++|...|+
T Consensus 626 k~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg--------~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKG--------RFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhcc--------CchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHH
Confidence 345677778777665431 23333333322334444 899999999999887652 34467789999999999
Q ss_pred HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------------
Q 013497 117 GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS-------------- 182 (442)
Q Consensus 117 ~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~-------------- 182 (442)
+..|.++|+...+.+.-.-+...-+.|-.++.++|.+.+|.+..-........-..+-||..+-..
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 999999999876455545566778888899999999999988766655444433455566544321
Q ss_pred ----HhcCCHHHHHHHHHHHHhccCC
Q 013497 183 ----AETGRVEKVYQYLQKLRSTVRC 204 (442)
Q Consensus 183 ----~~~g~~~~a~~ll~~m~~~~~~ 204 (442)
...+..+.|.++|.+|...+-.
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1234578899999999887665
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.61 E-value=1.3 Score=45.70 Aligned_cols=163 Identities=9% Similarity=-0.006 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHHHHHHHHH--HHHhcCCCCCCchhhHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----N----------LRLSLHHFNALLY--LCSDSATDPSSKDSALRHGFRV 88 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g----------~~p~~~ty~~ll~--~~~~~~~~~~~~~~~~~~a~~l 88 (442)
+|+.|-..|.......-..+++...... + -.|+...|...+- .|...| ..++|+++
T Consensus 145 lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g--------~~~~Al~~ 216 (517)
T PF12569_consen 145 LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG--------DYEKALEY 216 (517)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC--------CHHHHHHH
Confidence 4555555566555555555666665422 1 1345545544432 565666 89999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 89 FDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 89 ~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
.+.-.+.. |+ +-.|.+-.+.|-+.|++++|.+.+++.+ ... .-|...=+-.+..+.++|++++|.+++......+
T Consensus 217 Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 217 IDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99887753 54 6788888999999999999999999988 543 2366667778888899999999999999998777
Q ss_pred CCCCHHH--------HHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 168 LSLEQQE--------IAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 168 ~~p~~~t--------y~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
..|-... ....-.+|.+.|++..|++.|....
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6443321 1344567888999888877666553
No 122
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.61 E-value=0.014 Score=44.14 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 013497 80 SALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 158 (442)
|.++.|..+|+.+.+.... |+...+-.+..+|.+.|++++|..+++. . ..+- .+....-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~-~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L-KLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H-THHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h-CCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4899999999999886542 3455555689999999999999999988 3 2221 122333345678889999999999
Q ss_pred HHHH
Q 013497 159 VEEH 162 (442)
Q Consensus 159 l~~~ 162 (442)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
No 123
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.59 E-value=0.065 Score=38.36 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=24.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 149 ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 149 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+.|++++|.++|+.+....-. +...+-.|..+|.+.|++++|..++.++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345555555555555433211 3334444555555555555555555554443
No 124
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.56 E-value=0.099 Score=48.26 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013497 25 NFLINLQSCTKS-----KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA 72 (442)
Q Consensus 25 ~~~~li~~~~k~-----g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~ 72 (442)
+|-+.+..+... +.++=-...++.|++-|+.-|..+|+.||+.+-++.
T Consensus 69 sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 69 SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 788888777653 667777777889999999999999999999887765
No 125
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.51 E-value=0.24 Score=51.38 Aligned_cols=133 Identities=11% Similarity=0.137 Sum_probs=72.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
.....+.+|+.+++.+++.... ..-|..+-.-|+..+ .++.|.++|-+- -.++-.|.+|.+
T Consensus 743 i~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~--------dfe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKG--------DFEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccch--------hHHHHHHHHHhc---------chhHHHHHHHhc
Confidence 3344455555555555544331 112333333555555 777777777543 125566777777
Q ss_pred cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQ 193 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ 193 (442)
+|+|++|.++-++.. |-......|-+-..-+-++|.+.+|.+++--+. .|+ --|..|-+.|..+...+
T Consensus 804 ~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred cccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHH
Confidence 777777777765544 223334455555555566666666666653321 132 23556667777666666
Q ss_pred HHHH
Q 013497 194 YLQK 197 (442)
Q Consensus 194 ll~~ 197 (442)
+..+
T Consensus 872 lv~k 875 (1636)
T KOG3616|consen 872 LVEK 875 (1636)
T ss_pred HHHH
Confidence 6554
No 126
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.56 Score=43.79 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=108.3
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-------------
Q 013497 33 CTKSKDLTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI------------- 98 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~------------- 98 (442)
.-|.|+.++|++-|....+. |..| ...||.-|.-|.+. ..+.|++...+..++|++
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~---------qyasALk~iSEIieRG~r~HPElgIGm~teg 223 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSR---------QYASALKHISEIIERGIRQHPELGIGMTTEG 223 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhh---------hHHHHHHHHHHHHHhhhhcCCccCccceecc
Confidence 35789999999999998765 5544 57899998877776 589999999999988864
Q ss_pred CCHH--------HHHHHHH-------HHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 99 PNEA--------SVTSVAR-------LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 99 p~~~--------ty~~li~-------~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
||+. .-+.++. .+.+.|+.+.|.+-+-.|.-+..-..|.+|...+.-.= -.+++.+..+-+.-+
T Consensus 224 iDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 224 IDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFL 302 (459)
T ss_pred CchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHH
Confidence 2321 1233333 35678899999999999962333455677766543322 234455555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
.+.+-.| ..||..++-.|||+.-++.|-+++-+-
T Consensus 303 L~~nPfP-~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 303 LQQNPFP-PETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HhcCCCC-hHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 5554333 468899999999999999999988764
No 127
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.43 E-value=0.14 Score=47.21 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC----------------HHHH
Q 013497 98 IPNEASVTSVARLAASK-----NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE----------------AEKA 156 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~----------------~~~A 156 (442)
..|-.+|-+.+.-+... +.++-....++.|+ ++|+.-|+.+|+.||+.+-+..- -.=+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~-eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMK-EYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH-HhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 45666777777666543 56777777788899 99999999999999988765332 2346
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 013497 157 YEVEEHMGLMGLSLEQQEIAALLKVSAETGR-VEKVYQYLQKL 198 (442)
Q Consensus 157 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-~~~a~~ll~~m 198 (442)
..|+++|..+|+.||-.+--.||+++.+.+. ..+..+++--|
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 7899999999999999999999999988664 33444444444
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.3 Score=46.58 Aligned_cols=169 Identities=9% Similarity=0.054 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 22 p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
|+.-.|. |--|.+.+++.+|..+.+++. -..|-.+..-.+.. ...|.. ......+.-|.+.|+-.-+.+..-|+
T Consensus 285 PEARlNL-~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~--aalGQe-~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 PEARLNL-IIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVF--AALGQE-TGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hHhhhhh-eeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHH--HHhhhh-cCcHHHHHHHHHHHHHhccccccccc
Confidence 4444443 345788999999998887653 12232222222322 222211 11222677788888877666665444
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 013497 102 AS-VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA-LL 179 (442)
Q Consensus 102 ~t-y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~-li 179 (442)
.. --++.+.+.-.-++|+++-.+..++ ..=..-|.+.|| +.++++..|...+|+++|-.+....++ |..+|.+ |.
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LA 435 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLA 435 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHH
Confidence 32 3455566666778999999999888 654455666666 578899999999999999776555444 5667765 45
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 013497 180 KVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~ 199 (442)
++|.+++..+.|++++-.+.
T Consensus 436 rCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHhcCCchHHHHHHHhcC
Confidence 68899999999999887664
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.26 E-value=3.1 Score=45.56 Aligned_cols=145 Identities=12% Similarity=0.051 Sum_probs=90.2
Q ss_pred cccCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC----------CCCCCchhh
Q 013497 15 KRKTNPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQ-NLRLSLHHFNALLYLCSDSA----------TDPSSKDSA 81 (442)
Q Consensus 15 ~~~~~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~-g~~p~~~ty~~ll~~~~~~~----------~~~~~~~~~ 81 (442)
.-.....|+. .+-.||+.+-..+++++|.++.++..+. .-.+...-|..+ ++...+ ++.......
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~ 98 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLK 98 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccc
Confidence 3445566665 8999999999999999999999976543 233444444444 333322 111112223
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 013497 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEE 161 (442)
Q Consensus 82 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 161 (442)
...+..++..|...+ -+...+-++..+|-+.|+.++|..+++++. +.. .-|...-|.+-..|... ++++|.+++.
T Consensus 99 ~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 99 WAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred hhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 333344444444322 233466677777777788888888888877 554 33566777777777777 8888887776
Q ss_pred HHHHC
Q 013497 162 HMGLM 166 (442)
Q Consensus 162 ~M~~~ 166 (442)
.....
T Consensus 174 KAV~~ 178 (906)
T PRK14720 174 KAIYR 178 (906)
T ss_pred HHHHH
Confidence 65543
No 130
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.24 E-value=0.066 Score=38.32 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
|++++|.++|+.+...... |...+-.+..+|.+.|++++|..+++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3666666666666554322 45555566666666666666666666665
No 131
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.14 E-value=1.1 Score=38.88 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR- 136 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~- 136 (442)
.|..+-..+...+ ++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.. .. .|+
T Consensus 37 ~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~ 105 (172)
T PRK02603 37 VYYRDGMSAQADG--------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-EL--NPKQ 105 (172)
T ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--Cccc
Confidence 3444444666667 89999999999887554432 4688899999999999999999999987 43 453
Q ss_pred cccHHHHHHHHHHcCC
Q 013497 137 LRTYDPALFCFCENLE 152 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~ 152 (442)
...+..+-..|...|+
T Consensus 106 ~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 106 PSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4556666667777666
No 132
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.10 E-value=1.6 Score=36.22 Aligned_cols=126 Identities=20% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~ 105 (442)
...+|..+.+.+....+..+++.+...+. .+...+|.+|.++.+.. ..+..+.+.. .++.+...
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~---------~~~ll~~l~~------~~~~yd~~ 73 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD---------PQKEIERLDN------KSNHYDIE 73 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC---------HHHHHHHHHh------ccccCCHH
Confidence 34566666666777777777777766653 56667777777666553 3333444331 12233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCEN-LEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
-+++.|-+.+.++++..++..+. . |...+..+... ++++.|.+.+.+- .+...|..++..+.
T Consensus 74 ~~~~~c~~~~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 74 KVGKLCEKAKLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHcCcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 46666666666666666665554 1 33344444444 6666666665541 14455666665554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=2.7 Score=38.58 Aligned_cols=159 Identities=10% Similarity=-0.003 Sum_probs=114.0
Q ss_pred hcCCHHHHHHHHHHHH---hCC-CCCCHHHHHHH-HHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 013497 35 KSKDLTTAISLYESAH---SQN-LRLSLHHFNAL-LYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVA 108 (442)
Q Consensus 35 k~g~~~~A~~lf~~m~---~~g-~~p~~~ty~~l-l~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~ty~~li 108 (442)
...+.++.++++.++. ..| ..|+..+..-. +-+....+ +.+.|..+++++...-.. +-+.-..++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~--------~~~lAq~C~~~L~~~fp~S~RV~~lkam- 94 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTG--------RDDLAQKCINQLRDRFPGSKRVGKLKAM- 94 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhc--------chHHHHHHHHHHHHhCCCChhHHHHHHH-
Confidence 3567888899988876 344 55665443332 22444444 788999999998876522 222222222
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRV 188 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 188 (442)
.+-..|++++|.++++... +.. +.|.++|--=|...-..|.--+|++-+.+-.+. +..|...|..|-+.|...|++
T Consensus 95 -~lEa~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 95 -LLEATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred -HHHHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHH
Confidence 2345789999999999998 443 557788887777777788888888877777654 566999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCChH
Q 013497 189 EKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 189 ~~a~~ll~~m~~~~~~p~~~ 208 (442)
++|.-.+++|.-. +|-..
T Consensus 171 ~kA~fClEE~ll~--~P~n~ 188 (289)
T KOG3060|consen 171 EKAAFCLEELLLI--QPFNP 188 (289)
T ss_pred HHHHHHHHHHHHc--CCCcH
Confidence 9999999999764 45443
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.07 E-value=0.29 Score=48.08 Aligned_cols=95 Identities=13% Similarity=0.044 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l 159 (442)
++++|.++|++..+... -+...|..+-.+|.+.|++++|+..++... .. .| +...|..+-.+|...|++++|...
T Consensus 17 ~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 17 DFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAI-EL--DPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 78999999999887643 367788888889999999999999998887 43 45 456777788888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH
Q 013497 160 EEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 160 ~~~M~~~g~~p~~~ty~~li~~ 181 (442)
|+..... .|+......++.-
T Consensus 93 ~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9888764 4555555555433
No 135
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.06 E-value=1.7 Score=44.92 Aligned_cols=149 Identities=11% Similarity=-0.018 Sum_probs=92.9
Q ss_pred CCCCHH-HHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH-HhcCCCCCCchhhHHHHHHHHH
Q 013497 19 NPNPET-NFLINLQSCTKSK-----DLTTAISLYESAHSQNLRLS-LHHFNALLYLC-SDSATDPSSKDSALRHGFRVFD 90 (442)
Q Consensus 19 ~~~p~~-~~~~li~~~~k~g-----~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~l~~ 90 (442)
..+++. .|...+.+..... +...|..+|++..+. .|+ ...|..+-.++ .....+. .....+..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~-~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQP-LDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH
Confidence 334444 8888888855432 377999999998865 344 34454442222 2221111 11224455555555
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 91 QMLSN-NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 91 ~M~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
..... ....+..+|.++--.+...|++++|...+++.. .. .|+...|..+-..|...|+.++|.+.+++-... .
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 43332 233345677777666666789999999998887 44 578888888888888899999998888876543 3
Q ss_pred CCHHHH
Q 013497 170 LEQQEI 175 (442)
Q Consensus 170 p~~~ty 175 (442)
|...||
T Consensus 484 P~~pt~ 489 (517)
T PRK10153 484 PGENTL 489 (517)
T ss_pred CCCchH
Confidence 444443
No 136
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.00 E-value=0.16 Score=42.81 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCCChHH
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS-----TVRCVNEET 209 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t 209 (442)
...++..+...|+.++|..+...+.... +.|+..|..+|.+|...|+...|.+.|++++. .|+.|++.|
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344444555555555555555555432 12455555666666666666666555555422 355555544
No 137
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.97 E-value=0.13 Score=43.37 Aligned_cols=72 Identities=14% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG-----LMGLSLEQQEI 175 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~-----~~g~~p~~~ty 175 (442)
.+...++..+...|++++|..+..... ... +-|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l-~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRAL-ALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH-HHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456678888889999999999999988 432 4477899999999999999999999999884 34999987763
No 138
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.89 E-value=1.1 Score=43.25 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
....|.++-.+. -.||..-|-..|++|+..++|++-..+..+ + + +..-|-+.+.+|.+.|...+|..+.
T Consensus 192 ~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-K-----sPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 192 QEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS-K-K-----SPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred CHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-C-----CCCChHHHHHHHHHCCCHHHHHHHH
Confidence 455555554444 346777777777777777777766654322 1 1 2466777777777777777777666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
..+ ++..-+..|.++|++.+|.+.-.+
T Consensus 261 ~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 261 PKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 552 235556667777777777655433
No 139
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.86 E-value=2.2 Score=39.95 Aligned_cols=167 Identities=12% Similarity=0.158 Sum_probs=117.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCC-CC---C---C-chhhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--CHHH
Q 013497 51 SQNLRLSLHHFNALLYLCSDSAT-DP---S---S-KDSALRHGFRVFDQMLS-NNVIPNEASVTSVARLAASKN--DGDY 119 (442)
Q Consensus 51 ~~g~~p~~~ty~~ll~~~~~~~~-~~---~---~-~~~~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g--~~~~ 119 (442)
..|.+++..-+-.++..+...-. +. | . ++..+.+|+++|+.... ..+--|..+...+++...... ....
T Consensus 105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~a 184 (292)
T PF13929_consen 105 SMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNA 184 (292)
T ss_pred HcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhh
Confidence 45666666555555554433221 00 0 0 22356677888874322 346678888888888877622 3344
Q ss_pred HHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-
Q 013497 120 AFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQK- 197 (442)
Q Consensus 120 A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~- 197 (442)
-.++.+-+.+..+-.++.-+...+|..+++.+++.+-+++++.-... +..-|...|..+|+.-.+.|+..-...+..+
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 45555555545566788899999999999999999999999887655 6667889999999999999999887777765
Q ss_pred ----HHhccCCCChHHHHHHHHHh
Q 013497 198 ----LRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 198 ----m~~~~~~p~~~t~~~li~~~ 217 (442)
+++.++..++..-..|-..|
T Consensus 265 hLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 265 HLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred CeEEeeecCCcCCHHHHHHHHHHH
Confidence 45677788888888888777
No 140
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.83 E-value=1.2 Score=42.45 Aligned_cols=135 Identities=10% Similarity=0.209 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcC
Q 013497 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV---IPNEASVTSVARLAASKN 115 (442)
Q Consensus 39 ~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~---~p~~~ty~~li~~~~~~g 115 (442)
+.+.+.+++.|.+.|++-+.++|-+...+.... +..-..-...+|.++|+.|++.-. .++-.++.+|+.. ...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~--~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEE--EKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 445667889999999998888887755544431 111122268889999999998543 3677888888776 334
Q ss_pred CH----HHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 116 DG----DYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLE---AEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 116 ~~----~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~---~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
++ +.++..++.+. ..|+..+- .-+-+-|-+++..-. +.++.++++.+.+.|+++....|.++
T Consensus 154 ~~e~l~~~~E~~Y~~L~-~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLA-DAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred cHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 43 56777788888 66776533 233333333333222 34678899999999998887776543
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.82 E-value=0.63 Score=45.71 Aligned_cols=103 Identities=10% Similarity=-0.088 Sum_probs=81.1
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 187 (442)
..+...|++++|++.|++.. .. .| +...|..+-.+|.+.|++++|...++......- .+...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al-~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAI-DL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 45667899999999999998 43 34 456788888899999999999999999987532 256678888889999999
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 188 VEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 188 ~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+++|...|++.... .|+.......+..+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999998764 56655554444444
No 142
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.74 E-value=1.1 Score=38.66 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL--SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p--~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
.|..+...+...|++++|+..|++.......| ...+|..+=.++...+ .+++|...|+...... +....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~Al~~~-~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--------EHTKALEYYFQALERN-PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cCcHH
Confidence 67778888888999999999999987553222 2245666555777777 8999999999887642 22345
Q ss_pred HHHHHHHHHH-------hcCCHHHHHHHHHH
Q 013497 103 SVTSVARLAA-------SKNDGDYAFVLIKR 126 (442)
Q Consensus 103 ty~~li~~~~-------~~g~~~~A~~~~~~ 126 (442)
++..+...+. +.|++++|...+++
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5666666666 66676655544443
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.72 E-value=0.92 Score=36.87 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSNNVI--PNEASVTS 106 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~--p~~~ty~~ 106 (442)
++-..|+.++|+.+|++..+.|..... .-..+|. .+..-| ++++|..+|++....... .+......
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGAD-RRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 345568888888888888777765432 2234443 455555 788888888877654321 01111122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 149 (442)
+.-++...|+.++|++.+-... .+++..|.--|..|..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~l-----a~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEAL-----AETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 3346667788888887776544 2333366666666643
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.71 E-value=3 Score=43.11 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=100.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------CHHHHHH
Q 013497 52 QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAASKN--------DGDYAFV 122 (442)
Q Consensus 52 ~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g--------~~~~A~~ 122 (442)
.+...|...|...+.+..... . ...+..++|.++|++..+.. || ...|..+..+|.... ++..+.+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~--~-~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLN--S-GDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHh--c-CCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445678899999998533211 0 01236889999999987753 54 345554444333221 2233444
Q ss_pred HHHHhHhhC-CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 123 LIKRMNNEF-NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 123 ~~~~m~~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
...... .. ....+...|.++--.+...|++++|...++.....+ |+...|..+-..+...|+.++|.+.+++-...
T Consensus 406 ~~~~a~-al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 406 ELDNIV-ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhh-hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 443332 21 123344678877666667899999999999998876 78889999999999999999999999876543
Q ss_pred cCCCChHHHHH
Q 013497 202 VRCVNEETGKI 212 (442)
Q Consensus 202 ~~~p~~~t~~~ 212 (442)
.|...||-.
T Consensus 483 --~P~~pt~~~ 491 (517)
T PRK10153 483 --RPGENTLYW 491 (517)
T ss_pred --CCCCchHHH
Confidence 566555543
No 145
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.64 E-value=0.62 Score=40.20 Aligned_cols=48 Identities=6% Similarity=0.089 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 81 ALRHGFRVFDQMLSNNVIP--NEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.+++|...|+........| ...+|..+-..|...|+.++|...++...
T Consensus 50 ~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 50 EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555443322111 11244444444555555555555554443
No 146
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=9.5 Score=41.79 Aligned_cols=82 Identities=11% Similarity=-0.068 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
..|+.+..+-.+.|.+.+|.+-|-... |...|.-+|....+.|.+++-.+.+....++.-.|... +.||-+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 345555555555555555554442211 44445555555555555555555544444444444433 345555
Q ss_pred HHhcCCHHHHH
Q 013497 182 SAETGRVEKVY 192 (442)
Q Consensus 182 ~~~~g~~~~a~ 192 (442)
|++.+++.+..
T Consensus 1176 yAkt~rl~elE 1186 (1666)
T KOG0985|consen 1176 YAKTNRLTELE 1186 (1666)
T ss_pred HHHhchHHHHH
Confidence 55555544433
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.33 E-value=2 Score=44.99 Aligned_cols=180 Identities=9% Similarity=0.002 Sum_probs=118.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
..+-..+.+.|-...|+.+|++. ..|.-+|..|...| ...+|..+..+-.+ -+||...|..
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg--------~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLG--------QHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhc--------ccchHHHHHHHHhc--CCCcchhHHH
Confidence 34455667778888888888875 34555566555555 66777777776655 4678888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG 186 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g 186 (442)
+-+..-...-+++|.++++... .. --+.++.++ .+.++++++.+.|+.-.+.+ ..-..+|-.+=.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~s-ar----A~r~~~~~~---~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS-AR----AQRSLALLI---LSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh-HH----HHHhhcccc---ccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 8887777777888888887765 21 011222222 12677888888777654432 113345555555666789
Q ss_pred CHHHHHHHHHHHHhccCCCCh-HHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 187 RVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 187 ~~~~a~~ll~~m~~~~~~p~~-~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
++..|.+.|+.-.. ..|+. ..||.+-.+| .+.+...-+.....||...
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ay--i~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAY--IRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHH--HHHhhhHHHHHHHHHHhhc
Confidence 99999999987654 35665 4789999999 7776665566667777664
No 148
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.30 E-value=4.4 Score=40.46 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++.-|.++|+.-.+ ..|++..|.+.|+.=.+-..++.|..+++... -+.|++.+|---...=-++|.+..|..+|
T Consensus 156 Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 156 NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44555555554322 45666666666666666666666666666555 23466666655555555666666666666
Q ss_pred HHHHH
Q 013497 161 EHMGL 165 (442)
Q Consensus 161 ~~M~~ 165 (442)
+...+
T Consensus 231 erAie 235 (677)
T KOG1915|consen 231 ERAIE 235 (677)
T ss_pred HHHHH
Confidence 55443
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.97 E-value=2.4 Score=36.05 Aligned_cols=92 Identities=10% Similarity=-0.134 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR-TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
++-.-+...|++++|..+|+-.. . +.|... -|-.|=.++-..|++++|...|........ -|...+-.+-.++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~-~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLT-I--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-H--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 44455677888888888888776 3 345443 344455555567888888888888877663 366777777888888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 013497 185 TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~ 201 (442)
.|+.+.|.+.|+.-...
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888765543
No 150
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.88 E-value=4.7 Score=41.77 Aligned_cols=173 Identities=14% Similarity=0.047 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013497 31 QSCTKSKDLTTAISLYESAH-SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~-~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 109 (442)
....+.|++..-...|+... ..-+.-....|...|......+ -++-+.++|+.-.+. +...-+-.|.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~--------lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG--------LPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC--------ChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 34455677777777777744 3334334456777777666666 577788888877542 3334678888
Q ss_pred HHHhcCCHHHHHHHHHHhHhh-----CCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHH
Q 013497 110 LAASKNDGDYAFVLIKRMNNE-----FNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQ--QEIAALLKV 181 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~-----~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~--~ty~~li~~ 181 (442)
-+++.+++++|-+.+...... ..-+.+...|.-+-+-.+++-+.-.-..+-.-|..- +..||. ..|++|.+.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 899999999999988876510 011233344555555555544433333322222211 234444 368888888
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
|.+.|.+++|.+++.+-......... ++.+-++|
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrD--Ft~ifd~Y 291 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRD--FTQIFDAY 291 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhh--HHHHHHHH
Confidence 99999999999998887766444333 34444444
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.88 E-value=5.3 Score=36.89 Aligned_cols=165 Identities=10% Similarity=-0.009 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 22 PETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 22 p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
|+..|..-... .+.|++++|.+.|+++...--.+ ...-.+.+. ++-+.+ ++++|...|++..+.-..
T Consensus 32 ~~~~Y~~A~~~-~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~--------~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 32 PSEIYATAQQK-LQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCcC
Confidence 33366655554 55899999999999998753222 333333322 555666 899999999999887655
Q ss_pred CCHHHHHHHHHHHHh--cC---------------C---HHHHHHHHHHhHhhCCCCCCccc------H------------
Q 013497 99 PNEASVTSVARLAAS--KN---------------D---GDYAFVLIKRMNNEFNVVPRLRT------Y------------ 140 (442)
Q Consensus 99 p~~~ty~~li~~~~~--~g---------------~---~~~A~~~~~~m~~~~g~~p~~~t------y------------ 140 (442)
-..+-|.-.+.+.+. .+ + ..+|+..|++.. +. -|+..- .
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li-~~--yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV-RG--YPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH-HH--CcCChhHHHHHHHHHHHHHHHHHHH
Confidence 455666667766652 11 1 245667777766 22 344311 1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 141 DPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 141 ~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
-.+..-|.+.|.+..|..=++.+.+. +........-.|+.+|.+.|..++|..+..-+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 02223367778887788777777765 444455566677788888888888877665543
No 152
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.86 E-value=1.3 Score=42.31 Aligned_cols=131 Identities=11% Similarity=0.127 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhHhhCCC--CCCcccHHHHHHHHHHcCC
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS--KN----DGDYAFVLIKRMNNEFNV--VPRLRTYDPALFCFCENLE 152 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~~~~~m~~~~g~--~p~~~ty~~li~~~~~~g~ 152 (442)
.+++..++++.|++.|+.-+..+|-+..-.... .. ....|..+++.|++...+ .++-.++..|+.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 688899999999999999998888774443333 22 356799999999943332 3566778888766 3343
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC---CHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 153 ----AEKAYEVEEHMGLMGLSLEQQ-EIAALLKVSAETG---RVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 153 ----~~~A~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g---~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
++.++..|+.+...|+..+.. -+.+-|-+++... .+.++.++++.+++.++.+....|..|
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 456778888998888877543 3333333333321 256789999999999999998887654
No 153
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.84 E-value=11 Score=42.10 Aligned_cols=167 Identities=12% Similarity=0.027 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN--L-RLS--LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----N 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g--~-~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~----~ 95 (442)
.++.+-..+...|++++|...+.+..... . .+. ..+++.+-..+...| +++.|.+.+++... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G--------~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG--------FLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHh
Confidence 45556666778999999999999876321 1 111 122333333555666 89999988887554 2
Q ss_pred CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC--CCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 013497 96 NVI--P-NEASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVP--RLRTYDPALFCFCENLEAEKAYEVEEHMGLM-- 166 (442)
Q Consensus 96 g~~--p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-- 166 (442)
|.. | ...++..+-..+...|++++|...+.+.. .. ...| ...++..+...+...|+.++|.+.++.....
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL-EVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH-HhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 321 1 23445556667778899999999998875 21 1112 2334455566778899999999998887542
Q ss_pred --CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 167 --GLSLEQQEI--AALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 167 --g~~p~~~ty--~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+..+..... ...+..+...|..+.|.+++.....
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 111111011 1122445568999999999877544
No 154
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.70 E-value=4 Score=35.20 Aligned_cols=135 Identities=14% Similarity=0.186 Sum_probs=90.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013497 43 ISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFV 122 (442)
Q Consensus 43 ~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 122 (442)
++....+.+.|+.|+...|..+|.++.+.+ -...+.++...++-||.......+-.+.. ....+.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~------------~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Q 79 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNG------------QFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQ 79 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------------CHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHH
Confidence 345555667889999999999999888887 35666677788888888777766644433 2233444
Q ss_pred HHHHhHhhCCCCCCcc-cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 123 LIKRMNNEFNVVPRLR-TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 123 ~~~~m~~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+=-+|- .+ .. .+..++..+...|++-+|.++.+..... +......++++-.+.++...-..+++-....
T Consensus 80 l~lDML-kR-----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 80 LGLDML-KR-----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHH-HH-----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 434443 11 22 4778888899999999999887765322 1222356777777777777666666666554
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.64 E-value=2.2 Score=40.42 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
++.-+...+++.|++++|.++|++..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444455555555555555555544
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=2.4 Score=40.67 Aligned_cols=154 Identities=11% Similarity=0.096 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 38 DLTTAISLYESAHSQNLR----LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 38 ~~~~A~~lf~~m~~~g~~----p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
.+.-|..+|.-.-+++.. |...+..+-+-++- ++++++-.+...+..-..-|.+.|| +..+++.
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~-----------qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSF-----------QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 355666666655455543 44444443333222 6888888888877766666666665 6788999
Q ss_pred cCCHHHHHHHHHHhHhhCCCCCCcccHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYD-PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL-LKVSAETGRVEKV 191 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p~~~ty~-~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l-i~~~~~~g~~~~a 191 (442)
.|...+|+++|-.+. ...++ |-.+|- .|..+|.+++..+.||+++-.+.. ..+..+.--| .+-|-+++.+--|
T Consensus 406 tgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 406 TGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred hcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 44444 445555 455789999999999998766543 2233333333 3456678888778
Q ss_pred HHHHHHHHhccCCCChHHH
Q 013497 192 YQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 192 ~~ll~~m~~~~~~p~~~t~ 210 (442)
.+.|+++... .|++.-|
T Consensus 481 aKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 481 AKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHhhhHHHcc--CCCcccc
Confidence 8888877654 5776654
No 157
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.56 E-value=2.1 Score=42.72 Aligned_cols=158 Identities=12% Similarity=0.124 Sum_probs=125.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 35 k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
...|++.+.++|....+ =|+-..+||.-+=-+|+.-.+ +..++..|.+++... -|.-|-.-+|-..|..=.+.
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feI----Rq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEI----RQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHH----HHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHH
Confidence 35788899999998877 456667888887555544221 112788899998865 57778899999999999999
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-LSLEQQEIAALLKVSAETGRVEKVYQ 193 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~a~~ 193 (442)
+.+|.+..+++... ..+ +-|..+|.-.-..=...|+.|.|..+|+-..+.. +..-...|.+.|+.=...|.+++|..
T Consensus 451 ~efDRcRkLYEkfl-e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFL-EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHH-hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 99999999999998 653 3366778777777778999999999999887763 44456778888888888999999999
Q ss_pred HHHHHHhc
Q 013497 194 YLQKLRST 201 (442)
Q Consensus 194 ll~~m~~~ 201 (442)
+++++.+.
T Consensus 529 LYerlL~r 536 (677)
T KOG1915|consen 529 LYERLLDR 536 (677)
T ss_pred HHHHHHHh
Confidence 99998765
No 158
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.54 E-value=5.6 Score=36.03 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=132.8
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 19 NPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 19 ~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
...|+. +|..+-..|-+.|+.+.|.+-|++..+..- -+..+.|..=. +|..+ ++++|...|++....
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg---------~~~eA~q~F~~Al~~ 132 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQG---------RPEEAMQQFERALAD 132 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCC---------ChHHHHHHHHHHHhC
Confidence 345666 999999999999999999999999775421 12233333333 56555 699999999997764
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 96 NV-IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 96 g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
-- .--..||..+--+..+.|+.+.|.+.|+.-. +. .| ...+.-.+.....+.|+.-.|...++.....+. ++..
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL-~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~ 208 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL-EL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAE 208 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH-Hh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHH
Confidence 22 1234678888888889999999999999877 43 33 335677788888899999999999988877765 8999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
+.-..|+.-...|+.+.+.+.=.++... .|...-|
T Consensus 209 sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 209 SLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 9888999888899999988877776554 4554433
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.52 E-value=1.9 Score=40.34 Aligned_cols=103 Identities=10% Similarity=-0.031 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLMG--LSLEQQE 174 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--~~p~~~t 174 (442)
...|...+..+.+.|++++|...|+.+. .. -|+. ..+--+-..|...|+.++|...|+.+...- -......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl-~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFV-KK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4567777777677899999999999998 43 4654 356667788899999999999999998641 1112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
+--+...+...|+.++|..+|+++.+. .|+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 444556677899999999999988765 45544
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.39 E-value=0.49 Score=33.40 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=28.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 145 FCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
..+.+.|++++|.++|+...... | +...+..+-.++...|++++|..+|++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666665543 2 34444555555556666666666665554
No 161
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=11 Score=38.74 Aligned_cols=231 Identities=13% Similarity=0.098 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 24 ~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
...-+-|+.+.+.|++++|+....++...+-.+....+.-++. ..... .+++|+.+.+. .+. ..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvVa-lIq~~--------ky~~ALk~ikk---~~~---~~~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVA-LIQLD--------KYEDALKLIKK---NGA---LLV 77 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhh-hhhhh--------HHHHHHHHHHh---cch---hhh
Confidence 3445567889999999999999999987762222222333332 22333 78888855543 221 122
Q ss_pred HHHH--HHHHH--hcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 104 VTSV--ARLAA--SKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 104 y~~l--i~~~~--~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
++.. =.+|| +.+..|+|+..++-.. ++. .+-..=-.-+.+.|++++|+.+|+++.+++.. .+...
T Consensus 78 ~~~~~fEKAYc~Yrlnk~Dealk~~~~~~------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~ 147 (652)
T KOG2376|consen 78 INSFFFEKAYCEYRLNKLDEALKTLKGLD------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEE 147 (652)
T ss_pred cchhhHHHHHHHHHcccHHHHHHHHhccc------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHH
Confidence 3333 45554 6889999999887333 222 24444445677999999999999999877543 34444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhccCCCChHHHHHHH-HHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEE
Q 013497 179 LKVSAET-GRVEKVYQYLQKLRSTVRCVNEETGKIIE-DWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVV 256 (442)
Q Consensus 179 i~~~~~~-g~~~~a~~ll~~m~~~~~~p~~~t~~~li-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v 256 (442)
+.+-+.+ +..-.+ +.|......| ..||..+- .+|.-+.. +...+|++.+..
T Consensus 148 ~r~nl~a~~a~l~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~-------gky~qA~elL~k--------------- 200 (652)
T KOG2376|consen 148 RRANLLAVAAALQV----QLLQSVPEVP-EDSYELLYNTACILIEN-------GKYNQAIELLEK--------------- 200 (652)
T ss_pred HHHHHHHHHHhhhH----HHHHhccCCC-cchHHHHHHHHHHHHhc-------ccHHHHHHHHHH---------------
Confidence 4432221 111111 1233333334 44665443 33311222 555666665431
Q ss_pred eeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHH-----HHhHHHHHHhhHHHHHHHHHHcC
Q 013497 257 KRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVA-----ALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 257 ~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~-----~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.+. -|.+.|..-+..++|...=...|. .+-..|+..+|.+++...+.+..
T Consensus 201 ---A~~------~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 201 ---ALR------ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred ---HHH------HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 100 122333322333334444333442 24468899999999999887653
No 162
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=93.30 E-value=12 Score=39.10 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
||+.--+.|.+.+.++-|..+|....+.- .-+...|.-...+=...| ..+.-..+|++.... ++-.+..|
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hg--------t~Esl~Allqkav~~-~pkae~lw 587 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHG--------TRESLEALLQKAVEQ-CPKAEILW 587 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHh-CCcchhHH
Confidence 67777777777777777777777765431 223345555555444455 677777777777655 33456667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
-...+.+-..|++..|..++.+.- +. .| +...|-+.+..-..+.+++.|..+|..-.. ..|+...|.--+..--
T Consensus 588 lM~ake~w~agdv~~ar~il~~af-~~--~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAF-EA--NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHH
Confidence 677777777788888888887766 33 33 445677777777778888888888877654 4566666665555555
Q ss_pred hcCCHHHHHHHHHHHHhc
Q 013497 184 ETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~ 201 (442)
-.++.++|.+++++-.+.
T Consensus 663 ~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS 680 (913)
T ss_pred HhhhHHHHHHHHHHHHHh
Confidence 577778888887665543
No 163
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=7.5 Score=39.67 Aligned_cols=133 Identities=11% Similarity=0.032 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh-hCCCCCCc----ccHHHHHHHHHHcCCHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN-EFNVVPRL----RTYDPALFCFCENLEAEK 155 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~----~ty~~li~~~~~~g~~~~ 155 (442)
.++.|.+.|.+..... +-|....+-+=-.....+.+.+|...|+.-.. ...+.+.. -+++.|=++|.+.+..++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 7888999988765432 23556666665556667888999998887541 11112222 246666788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 156 AYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
|...++.-.... .-|..+|.++--.|...|+++.|.+.|++-. .+.|+..+...++.-.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 999999877653 3378888888888889999999999998764 4578887776666544
No 164
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.16 E-value=1.8 Score=42.80 Aligned_cols=143 Identities=16% Similarity=0.209 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH-HHhCCCCCCHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQ-MLSNNVIPNEA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~-M~~~g~~p~~~ 102 (442)
.|...|+...+..-++.|..+|-+.++.| +.++++.|+++|..+..+ ...-|.++|+- |+. -||+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~---------d~~ta~~ifelGl~~---f~d~~ 466 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG---------DRATAYNIFELGLLK---FPDST 466 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC---------CcchHHHHHHHHHHh---CCCch
Confidence 78889999999888999999999999999 689999999999966555 36668899875 432 24544
Q ss_pred HH-HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 103 SV-TSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 103 ty-~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
.| +-.+.-+..-++-..|..+|+.-. . .+.-+ ...|..+|.-=.+.|++..|..+-+.|.+ +.|...+...+.
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv-~-r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~ 542 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSV-E-RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhH-H-HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHH
Confidence 44 667788889999999999999544 1 12222 46899999999999999999999888876 467776666666
Q ss_pred HHHH
Q 013497 180 KVSA 183 (442)
Q Consensus 180 ~~~~ 183 (442)
.-|.
T Consensus 543 Sry~ 546 (660)
T COG5107 543 SRYA 546 (660)
T ss_pred HHHh
Confidence 6654
No 165
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=2.8 Score=42.66 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHh--CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH
Q 013497 81 ALRHGFRVFDQMLS--NNVI----PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 81 ~~~~a~~l~~~M~~--~g~~----p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 154 (442)
.+.+|...|+.-+. ..+. .-..+++.|=.+|.+.+..++|+..++.-. .. .+-|..||+++--.|...|+++
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL-~l-~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL-LL-SPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH-Hc-CCCchhHHHHHHHHHHHhcChH
Confidence 68889988887652 1111 134567888899999999999999999877 33 3558899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
.|.+.|..-. .+.|+..+-..|+..+.
T Consensus 507 ~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 507 KAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999998865 57898888788877543
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.88 E-value=6.1 Score=37.34 Aligned_cols=197 Identities=11% Similarity=0.086 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----N 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~----~ 95 (442)
.|...-..|-..+++++|.+.|.+..+ .+-.. -...|.....+|.+. ++++|.+.|++... .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---------~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---------DPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHHHhc
Confidence 788888899999999999999998642 22211 112333333345444 57777777776543 3
Q ss_pred CCCCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhHh---hCCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 96 NVIPN--EASVTSVARLAASK-NDGDYAFVLIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 96 g~~p~--~~ty~~li~~~~~~-g~~~~A~~~~~~m~~---~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
|- |+ ..++.-+-..|-.. |++++|.+.|++-.. ..+ .+. ..++.-+...+.+.|++++|.++|++....-
T Consensus 108 G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 GR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred Cc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 32 33 24666777777777 899999999987651 222 221 2567788888999999999999999987653
Q ss_pred C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCCCh--HHHHHHHHHhccccCCCcccchhhHHHHHH
Q 013497 168 L-----SLEQQ-EIAALLKVSAETGRVEKVYQYLQKLRST--VRCVNE--ETGKIIEDWFSGQKVNGVSCDLGLVKNAVL 237 (442)
Q Consensus 168 ~-----~p~~~-ty~~li~~~~~~g~~~~a~~ll~~m~~~--~~~p~~--~t~~~li~~~~~~~~~~~~~~~~~~~~a~~ 237 (442)
+ ..+.. .|-..+-++...|+...|.+.|++.... ++..+. .....|+.+|+. .|.+.+.+++.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-------~D~e~f~~av~ 258 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE-------GDVEAFTEAVA 258 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-------T-CCCHHHHCH
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-------CCHHHHHHHHH
Confidence 2 22222 2222333566689999999999988754 232332 255777888843 12255555554
Q ss_pred hc
Q 013497 238 KN 239 (442)
Q Consensus 238 ~~ 239 (442)
.+
T Consensus 259 ~~ 260 (282)
T PF14938_consen 259 EY 260 (282)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 167
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=7.6 Score=36.53 Aligned_cols=170 Identities=11% Similarity=-0.009 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 21 NPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 21 ~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.|+..+++.|..+.+..++..|++++..-.+.. | +....+.|=..|.... .+..|-+.|+++...- |
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q--------~f~~AA~CYeQL~ql~--P 75 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQ--------EFALAAECYEQLGQLH--P 75 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhC--h
Confidence 355578888888889999999999988766543 3 4444444444555555 7888888888876543 4
Q ss_pred CHHHHHHH-HHHHHhcCCHHHHHHHHHHhHhhC------------------C----------CCCCcccHHHHHHH---H
Q 013497 100 NEASVTSV-ARLAASKNDGDYAFVLIKRMNNEF------------------N----------VVPRLRTYDPALFC---F 147 (442)
Q Consensus 100 ~~~ty~~l-i~~~~~~g~~~~A~~~~~~m~~~~------------------g----------~~p~~~ty~~li~~---~ 147 (442)
...-|... ...+.+.+.+.+|+++...|. .. + -.|..-+-..+|+. .
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~-D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll 154 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLL-DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee
Confidence 44444322 234556677777777776665 21 0 01222222233332 2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC
Q 013497 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC 204 (442)
Q Consensus 148 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~ 204 (442)
.+.|+.+.|.+-|+...+-+-.-....||.-+.-| +.|+.+.|.+...++.+.|+.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 37889999999999887764333466788777665 678899999999999887654
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.68 E-value=7.6 Score=37.44 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..+.+.-|.-+...|+...|.++-.+.+ .|+.+-|-.-|.+|+..+++++-..+-.. . -.++-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHH
Confidence 3455666778888999999999977766 68999999999999999999987765432 2 23477999999
Q ss_pred HHHhcCCHHHHHHHHHH
Q 013497 181 VSAETGRVEKVYQYLQK 197 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~ 197 (442)
+|.+.|...+|..++.+
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 99999999999988876
No 169
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.60 E-value=2.1 Score=34.74 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---c-ccHHHHHHHHHHcCCHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR---L-RTYDPALFCFCENLEAE 154 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~-~ty~~li~~~~~~g~~~ 154 (442)
+.++|..+|+.-...|.... ...+-.+-+.|-..|++++|+.+|++.. .. .|+ . .....+-.++...|+.+
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~--~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EE--FPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CCCccccHHHHHHHHHHHHHCCCHH
Confidence 67777777777777665543 2344445566667777777777777665 32 233 1 11111223455667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 155 KAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
+|.+.+-.... ++...|.-=|..|
T Consensus 93 eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 93 EALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 77766544332 2333444444444
No 170
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.38 E-value=5.2 Score=44.52 Aligned_cols=162 Identities=15% Similarity=0.052 Sum_probs=103.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----CCC-CCH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----NVI-PNE 101 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~----g~~-p~~ 101 (442)
..+...|++++|...+++..+.--..+. ...+.+-..+...| ++++|...+++.... |-. +-.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--------~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--------ELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3456789999999999987653111121 12232222445555 899999999887642 211 123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVV--P-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLE-- 171 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~--p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~-- 171 (442)
.++..+-..+...|++++|...+++... ..+.. | ....+..+-..+...|++++|...+++.... ...+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 4556667778899999999999887651 12211 1 1223444555677789999999998887543 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...+..+...+...|+.+.|.+.+.+...
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555677789999999999988754
No 171
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.32 E-value=10 Score=35.79 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=103.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCc-------hhhHHHHHHHHHH---HHhCCCCC---C
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSK-------DSALRHGFRVFDQ---MLSNNVIP---N 100 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~-------~~~~~~a~~l~~~---M~~~g~~p---~ 100 (442)
.+.|+.+.|..++.+....-...++...-.|-..|...|.+.+.+ ...+++|.++++. |...+..+ -
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 578999999999999875431223333333323333322111111 1235556666644 32222221 2
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 101 EASVTSVARLAASKNDGD---YAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~---~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
..++..++.+|...+..+ +|..+++.+.++.+-. ..+|-.-|..+.+.++.+.+.+++..|...-.. ....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 357778888888887654 5777777776344322 445556677777789999999999999876321 3344565
Q ss_pred HHHHHHh--cCCHHHHHHHHHHHHhccCCCChH
Q 013497 178 LLKVSAE--TGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 178 li~~~~~--~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
++..+-. ......|...+.++....+.|++.
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 5555522 233456778888887777777775
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.11 E-value=0.64 Score=32.76 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=31.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
..+.+.|++++|...|++.. +. .| +...+..+-.++...|++++|..+|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l-~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQAL-KQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHH-CC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666 33 23 344555555666666666666666666643
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.86 E-value=1.5 Score=31.52 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 146 CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 146 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.|.+.+++++|.++++.+...+-. +...|...-.++.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555555555555544211 333344444455555555555555555543
No 174
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=91.79 E-value=12 Score=39.72 Aligned_cols=109 Identities=8% Similarity=-0.034 Sum_probs=75.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 90 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
.++....+.-|...|-.|--++..+|+++.+.+.|++.. . ++.-....|+.+-..|..+|.-..|..++++-....-.
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~-~-~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL-P-FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-H-hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 344445566788899999999999999999999999876 3 33445667888888899999989999998876544323
Q ss_pred CCHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHh
Q 013497 170 LEQQEIAALLK-VSA-ETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 170 p~~~ty~~li~-~~~-~~g~~~~a~~ll~~m~~ 200 (442)
|+..+--.|+. .|. +.+..+++.++-++...
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 44333222332 232 35667777766666554
No 175
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.56 E-value=20 Score=37.50 Aligned_cols=174 Identities=11% Similarity=0.144 Sum_probs=94.7
Q ss_pred CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCC-----------------
Q 013497 22 PET---NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD-------SATD----------------- 74 (442)
Q Consensus 22 p~~---~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~-------~~~~----------------- 74 (442)
||. .|++|-+-|.+.|+++.|..+|++....- .++.-|+.+.++|+. ..+.
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~ 321 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLEL 321 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHH
Confidence 565 89999999999999999999999966542 233334444433322 1000
Q ss_pred ----------------------------------CCCchhhHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhc
Q 013497 75 ----------------------------------PSSKDSALRHGFRVFDQMLSNNVIP------NEASVTSVARLAASK 114 (442)
Q Consensus 75 ----------------------------------~~~~~~~~~~a~~l~~~M~~~g~~p------~~~ty~~li~~~~~~ 114 (442)
.-+-.|+..+...+|.+.... +.| --..|..+-+.|-.+
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 001123444445555554332 111 123456666777778
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHH-------HcCCHHHHHHHHHHHHHCCCC-----------C------
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC-------ENLEAEKAYEVEEHMGLMGLS-----------L------ 170 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~-------~~g~~~~A~~l~~~M~~~g~~-----------p------ 170 (442)
|+++.|..+|+.-. +. +-.+-+-|-..+| ++.+++.|+++.+....-.-. +
T Consensus 401 ~~l~~aRvifeka~-~V----~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 401 GDLDDARVIFEKAT-KV----PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred CcHHHHHHHHHHhh-cC----CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 88888888887765 32 2333444444444 344455666655443221101 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 013497 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~ 203 (442)
+...|.-+++.--..|-++....+++++.+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 122344444444445666777777777766543
No 176
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.53 E-value=7 Score=32.32 Aligned_cols=125 Identities=17% Similarity=0.074 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccH
Q 013497 61 FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY 140 (442)
Q Consensus 61 y~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty 140 (442)
...+|..+...+ .......+++.+...+. .+...+|.+|..|++.. ..+.++.+.. .++....
T Consensus 10 ~~~vv~~~~~~~--------~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~ 72 (140)
T smart00299 10 VSEVVELFEKRN--------LLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDI 72 (140)
T ss_pred HHHHHHHHHhCC--------cHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCH
Confidence 345666666555 78889999999888774 68889999999999874 4444455442 2345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 141 DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET-GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 141 ~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
..++..|.+.+.++++..++..+.. |...++.+... ++.+.|.+++.+ .-++..|..++..+
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~ 135 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHH
Confidence 6789999999999999999888743 23344444444 788888888875 22666777777666
No 177
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.35 E-value=24 Score=38.15 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 21 NPETNFLINLQSC--TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 21 ~p~~~~~~li~~~--~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
-|+..|...+.++ .+.|..++|..+++.....+.. |..|..++-..|...+ +.++|..+|++.... -
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~--------~~d~~~~~Ye~~~~~--~ 107 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG--------KLDEAVHLYERANQK--Y 107 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh--------hhhHHHHHHHHHHhh--C
Confidence 4666667777665 4678888999888877766554 7788888877888888 899999999887543 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 013497 99 PNEASVTSVARLAASKNDGDY 119 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~ 119 (442)
|+..-...+..+|++.+.+.+
T Consensus 108 P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 108 PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 668888888888888877654
No 178
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.25 E-value=11 Score=38.44 Aligned_cols=143 Identities=12% Similarity=0.003 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013497 38 DLTTAISLYESAH-SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND 116 (442)
Q Consensus 38 ~~~~A~~lf~~m~-~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 116 (442)
.+....++|-++. ..+.++|+..++.|=-+|--.+ .+++|.+.|+....... -|..+||-|=..++...+
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~--------efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG--------EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNR 479 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch--------HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcc
Confidence 3445556666654 5564566666666644555556 89999999999876532 378999999999999999
Q ss_pred HHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHH---HC------CCCCCHHHHHHHHHHHHhcC
Q 013497 117 GDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMG---LM------GLSLEQQEIAALLKVSAETG 186 (442)
Q Consensus 117 ~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~---~~------g~~p~~~ty~~li~~~~~~g 186 (442)
-++|..-+.+.. .++|+- ++.-.|--+|...|.+++|.+.|=... .+ +-.++...|.+|=.++.-.+
T Consensus 480 s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~ 556 (579)
T KOG1125|consen 480 SEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN 556 (579)
T ss_pred cHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence 999999999987 457764 343344445779999999988765432 22 12234456777666666666
Q ss_pred CHHHHH
Q 013497 187 RVEKVY 192 (442)
Q Consensus 187 ~~~~a~ 192 (442)
+.|.+.
T Consensus 557 ~~D~l~ 562 (579)
T KOG1125|consen 557 RSDLLQ 562 (579)
T ss_pred CchHHH
Confidence 655443
No 179
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.23 E-value=3 Score=41.62 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc----cHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR----TYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
.+...++.+-.+|.+.|++++|+..|++-. + +.|+.. +|..+-.+|.+.|+.++|.+.++...+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rAL-e--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETAL-E--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999999976 3 478754 5899999999999999999999988775
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.77 E-value=0.97 Score=33.17 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHh---hCC-CCCC-cccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNN---EFN-VVPR-LRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g-~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
+|+.+-..|...|++++|+..|++... ..| -.|+ ..+++.+-..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555555555555555554431 011 0011 23444444444445555555444443
No 181
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=5.5 Score=43.50 Aligned_cols=89 Identities=12% Similarity=-0.010 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 20 ~~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
+.-+..|+.+-.+-.+.|.+.+|++-|-+.- |+..|.-+|..+++.+ .+++-.+.+...++..-.|
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~--------~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTG--------KYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHhhcCc
Confidence 4444578888888888888888887775432 5578889999999888 8988888887777776667
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLI 124 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~ 124 (442)
.+-+ .||-+|++.+++.+-++++
T Consensus 1167 ~id~--eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1167 YIDS--ELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred cchH--HHHHHHHHhchHHHHHHHh
Confidence 6554 8889999998887766654
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.11 E-value=9.6 Score=41.87 Aligned_cols=118 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..++|.++|+++.+.. +-|..+.|-+-..|+.. ++++|.+++.... .. |....++.++.++|
T Consensus 131 ~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-~~---------------~i~~kq~~~~~e~W 192 (906)
T PRK14720 131 ENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-YR---------------FIKKKQYVGIEEIW 192 (906)
T ss_pred ChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-HH---------------HHhhhcchHHHHHH
Confidence 8999999999998877 45888999999999999 9999999998876 33 44444555555555
Q ss_pred HHHHHC-------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 161 EHMGLM-------------------GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 161 ~~M~~~-------------------g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.++... |..--..++-.|-..|-+..+++++..+|+...+..-. +.-...-|+..|
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 555443 22223345555667787888889999999888765221 223445555555
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.97 E-value=1.3 Score=31.50 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcC-CHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENL-EAEKAYEVEEH 162 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g-~~~~A~~l~~~ 162 (442)
+|..+-..+...|++++|+..|++.. +. .| +...|..+-.+|.+.| +.++|.+.++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai-~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAI-EL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH-HH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444444444445555555544444 22 12 2233444444444444 34444444443
No 184
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=89.97 E-value=4.1 Score=34.66 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|..+|+....... -+..-|-.|--++-..|++++|+..|...- ... .-|.+.|-.+=.++.+.|+.+.|.+-|
T Consensus 50 ~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 50 EFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred CHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 79999999999876543 255666777778888999999999999887 543 236688888899999999999999999
Q ss_pred HHHHHC
Q 013497 161 EHMGLM 166 (442)
Q Consensus 161 ~~M~~~ 166 (442)
+.....
T Consensus 127 ~~Ai~~ 132 (157)
T PRK15363 127 KAVVRI 132 (157)
T ss_pred HHHHHH
Confidence 876654
No 185
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.87 E-value=1.4 Score=41.51 Aligned_cols=94 Identities=5% Similarity=-0.004 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN---LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g---~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
+-..++..-.....++.++..+-+++..- ..|+... .+.+.+|-+. ++++++.+...=.+.|+-||.
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllky---------~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLKY---------DPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHcc---------ChHHHHHHHhCcchhccccch
Confidence 55555555555566666666665555321 2233222 2233444444 355666666665666666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+|++.+|+.+.+.++..+|..+.-+|.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 666666666666666666666655554
No 186
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.86 E-value=3.5 Score=43.30 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 157 (442)
....+.+|+.+++.+...... +.-|.-+.+-|+..|+++-|.++|-+-- -++-.|..|.++|.++.|+
T Consensus 744 ~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHH
Confidence 334788899999888765432 3457778889999999999999996643 2677899999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
++-++. +|-......|-+-..-+-+.|++.+|.+++
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 997654 344445556655555566677666665543
No 187
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.72 E-value=29 Score=36.41 Aligned_cols=195 Identities=14% Similarity=0.020 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|-.....+-++||+..|..++...-+..-. +...|-.-+.+-.... .+++|..+|.+... ..|++-.|
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~--------e~eraR~llakar~--~sgTeRv~ 654 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFEND--------ELERARDLLAKARS--ISGTERVW 654 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccc--------cHHHHHHHHHHHhc--cCCcchhh
Confidence 5655666677788888888888887765432 5556666666655565 78888888887654 55677777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEIAALLKVS 182 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~li~~~ 182 (442)
.--++..--.+..++|.+++++.. + .-|+- ..|-.+=+.+-+.++++.|.+.|..=.. ..|+. ..|-.|.+.=
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~l-k--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakle 729 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEAL-K--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLE 729 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHH-H--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHH
Confidence 777777777788888888887765 2 23433 2344444555666677777666543221 23333 2333343433
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
-+.|.+-+|..+|++-+... .-+...|-..|..= .++|........+..|++.
T Consensus 730 Ek~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~E--lR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKN-PKNALLWLESIRME--LRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Confidence 44666666776666655442 22333444444433 4443333333344444443
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.66 E-value=6.5 Score=36.79 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC
Q 013497 58 LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (442)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 135 (442)
...|...+.+....+ ++++|...|+.+.+...... ..++--+-..|...|++++|...|+.+. .. -|
T Consensus 143 ~~~Y~~A~~l~~~~~--------~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv-~~--yP 211 (263)
T PRK10803 143 NTDYNAAIALVQDKS--------RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV-KN--YP 211 (263)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CC
Confidence 355666666555555 79999999999987643311 2466678888999999999999999998 32 24
Q ss_pred Cc-ccH---HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 136 RL-RTY---DPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 136 ~~-~ty---~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
+. ... --+...+...|+.++|..+|+...+.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 222 23345677899999999999988764
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=89.58 E-value=1.6 Score=31.46 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
..|.+.+++++|.++++.+. ... +.+...|...-..+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l-~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL-ELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH-HhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888888887 432 2355666677778888888888888888887653
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.48 E-value=1.6 Score=31.08 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=51.7
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG-RVEKVYQYLQKLRS 200 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~ll~~m~~ 200 (442)
..+|..+=..+...|++++|...|++..+.. +-+...|..+-.++.+.| +.++|.+.+++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567788888999999999999999998764 225667888888899999 79999999887654
No 191
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.34 E-value=1.4 Score=32.34 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=47.1
Q ss_pred CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 22 PET--NFLINLQSCTKSKDLTTAISLYESAHSQ----NL-RLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 22 p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~-~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
|+. +|+.+=..|...|++++|+..|++..+- |- .|+ ..+++.+=.++...| ++++|.+.|++-.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--------DYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Confidence 454 8999999999999999999999997632 21 122 344555555777788 9999999998754
No 192
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.21 E-value=9.3 Score=38.68 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
.+...|..|-+...+.|+++-|.+.|.... -|..|+--|.-.|+.++-.++-+.....|- +|.-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~a 408 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIA 408 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHH
Confidence 467788888888888888888888887765 267777778888888777777766665552 4666
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 013497 179 LKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~ 196 (442)
..++.-.|+.++..++|.
T Consensus 409 f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 666666777777776664
No 193
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=2 Score=40.55 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=61.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC---CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 95 NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF---NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 95 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~---g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
.|....+.|...++..-....+++++...+-..+ .. -..|+.. -.+.+.-+ -.=+..+++-+...=...|+.||
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlR-hs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLR-HSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHh-cCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 3444555666666666666667777777666655 21 1222222 22233333 33345567666666666677777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
..+++.||+.+.+.+++.+|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777666665443
No 194
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.01 E-value=7.3 Score=32.13 Aligned_cols=18 Identities=11% Similarity=0.231 Sum_probs=12.9
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 34 TKSKDLTTAISLYESAHS 51 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~ 51 (442)
.-.|.+++..++..+...
T Consensus 13 ildG~V~qGveii~k~v~ 30 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN 30 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHcC
Confidence 346888888999888663
No 195
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.60 E-value=4.5 Score=37.98 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=68.2
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCCChHHHH
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS-----TVRCVNEETGK 211 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~ 211 (442)
..++..++..+...|+.+.+.+.++++....-. ++..|..||.+|.+.|+...|.+.++.+.+ .|+.|.+.+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346778888999999999999999999876533 788999999999999999999999988765 68999998888
Q ss_pred HHHHHh
Q 013497 212 IIEDWF 217 (442)
Q Consensus 212 ~li~~~ 217 (442)
.....+
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777776
No 196
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.55 E-value=34 Score=35.71 Aligned_cols=167 Identities=11% Similarity=0.018 Sum_probs=103.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC-------------------------CCCCCch
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD---SA-------------------------TDPSSKD 79 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~---~~-------------------------~~~~~~~ 79 (442)
+--+-+.+.+++++|..+|..+... -||-+-|.-.+..|.. .. ++-..-.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence 4455677889999999999998876 4777777777663321 11 0000011
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCC----------CCCcc--cHHHHH
Q 013497 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN---EFNV----------VPRLR--TYDPAL 144 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~----------~p~~~--ty~~li 144 (442)
.-.+..-.++..+.+.|+++ ++..+.+.|=.-...+--.++.-++.. ..|. .|... |+--++
T Consensus 302 el~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 23444556667777888874 455555555443333322223322220 1111 34433 445677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 145 FCFCENLEAEKAYEVEEHMGLMGLSLEQQE-IAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t-y~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
..|-+.|+++.|.+..+....+ .|+.+. |-+=-+.+..+|++++|..++.+-++-
T Consensus 379 qh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 8889999999999999987754 565443 333347788899999999999988753
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.34 E-value=26 Score=37.70 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 013497 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 159 (442)
|.+++|..+|.+-+. |-.|=+.|-..|+|++|+++-+.=- + +.. ..||-.-..-+-..+|++.|++.
T Consensus 814 gMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~D-R--iHL-r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKD-R--IHL-RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred hhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcc-c--eeh-hhhHHHHHHHHHhhccHHHHHHH
Confidence 478888888887754 4456667778888999988865532 2 222 23555555556667778888777
Q ss_pred HHHH
Q 013497 160 EEHM 163 (442)
Q Consensus 160 ~~~M 163 (442)
|+.-
T Consensus 881 yEK~ 884 (1416)
T KOG3617|consen 881 YEKA 884 (1416)
T ss_pred HHhc
Confidence 7654
No 198
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.78 E-value=29 Score=35.52 Aligned_cols=166 Identities=20% Similarity=0.131 Sum_probs=104.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCH-----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHS-QNLRLSL-----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~-~g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
..+++...=.||-+.+++++.+..+ .|++-.. ..|..++..+.. ++. .....+.|.++++.+.++- |+
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~--~~~--~~~~~~~a~~lL~~~~~~y--P~ 265 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLG--IDG--EDVPLEEAEELLEEMLKRY--PN 265 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcC--Ccc--cCCCHHHHHHHHHHHHHhC--CC
Confidence 3455566667999999999988654 3443222 233333332111 111 2337899999999998753 67
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHhHhhCC--C-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 101 EASVTSVA-RLAASKNDGDYAFVLIKRMNNEFN--V-VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 101 ~~ty~~li-~~~~~~g~~~~A~~~~~~m~~~~g--~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
...|.-.- +.+...|++++|.+.|++.. ... . +.....|--+.-.+.-.+++++|.+.|..+.+..-- +..+|.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~-~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~ 343 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAI-ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYA 343 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhc-cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHH
Confidence 77665554 56677899999999999654 211 0 112233444455577789999999999999875322 344454
Q ss_pred HHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 013497 177 ALLKVS-AETGRV-------EKVYQYLQKLRS 200 (442)
Q Consensus 177 ~li~~~-~~~g~~-------~~a~~ll~~m~~ 200 (442)
-+..+| ...|+. ++|.++|.+...
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 444433 346766 788888877643
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.69 E-value=24 Score=32.84 Aligned_cols=128 Identities=7% Similarity=-0.019 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHH-----HHHcCCHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC-----FCENLEAEK 155 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~-----~~~~g~~~~ 155 (442)
.+.-...++.+..+...+.+.+....|.+.-.+.|+.+.|...|+... +..-+.|..+++.++.. |.-..++..
T Consensus 192 Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve-k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 192 EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE-KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 677788889998888777888999999999999999999999999887 44335667777766643 445667788
Q ss_pred HHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHH
Q 013497 156 AYEVEEHMGLMGLSLEQQEIA--ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIE 214 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~--~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li 214 (442)
|...|.++....-. |.+.-| +|+..| .|+..+|.+.+..|... .|.+.+-++++
T Consensus 271 a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 271 AHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 88888887765322 233333 455555 78899999999999765 56665555443
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=14 Score=34.23 Aligned_cols=143 Identities=8% Similarity=-0.010 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~ 105 (442)
-+.++..+.-.+.+.-.+.++++..+..-+.++..-..|.+.-...| +.+.|...|++..+..-..|..+++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--------D~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG--------DIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHhhhhccchh
Confidence 35566666666777788888888887666667777777777666666 8999999999887766666777777
Q ss_pred HHHH-----HHHhcCCHHHHHHHHHHhHhhCCCCCCcccHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 106 SVAR-----LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD--PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 106 ~li~-----~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
.++. .|.-.+++..|...+.+.. ... ..|.+.-| +|+..| .|+..+|.++.+.|... .|...+-+++
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~-~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEIL-RMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhcc-ccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 6664 3455667888888888887 432 12333333 444444 68999999999999875 4555555555
Q ss_pred HHHH
Q 013497 179 LKVS 182 (442)
Q Consensus 179 i~~~ 182 (442)
+-.+
T Consensus 326 ~~nL 329 (366)
T KOG2796|consen 326 LFNL 329 (366)
T ss_pred HHHH
Confidence 4433
No 201
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.14 E-value=16 Score=39.52 Aligned_cols=137 Identities=8% Similarity=0.052 Sum_probs=95.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
...+++..|+.......+. .|| ..|..++.+++... .|+.++|..+++.....+.. |..|..++-..|-.
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r------~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFR------LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHH------hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 3467788999988886543 344 34555555443321 22788999999988776665 99999999999999
Q ss_pred cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 114 KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 114 ~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
.++.++|..+++... +.-|+...-..+..+|.+.+++.+-.++=-+|-. .+.-....|-++++.+..
T Consensus 90 ~~~~d~~~~~Ye~~~---~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 90 LGKLDEAVHLYERAN---QKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HhhhhHHHHHHHHHH---hhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 999999999999987 4578888888889999998887754333222221 222344555566655544
No 202
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.89 E-value=6.3 Score=37.04 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL-----MGLSLEQQEIA 176 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~g~~p~~~ty~ 176 (442)
.+++.++..+...|+.+.+.+.+++.. ... .-+...|..+|.+|.+.|+...|...|+.+.. .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li-~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLI-ELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 466788899999999999999999998 432 34778999999999999999999999998865 58999888877
Q ss_pred HHHHH
Q 013497 177 ALLKV 181 (442)
Q Consensus 177 ~li~~ 181 (442)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 77666
No 203
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.84 E-value=41 Score=34.77 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhccCCCChH
Q 013497 139 TYDPALFCFCEN--LEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ--------KLRSTVRCVNEE 208 (442)
Q Consensus 139 ty~~li~~~~~~--g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~--------~m~~~~~~p~~~ 208 (442)
.+.+++..+.+. ..+.+|.+++...-+..-.-..++--+++.-....|+++.|.+++. .+.+.+ -.+.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChh
Confidence 444555444332 2366677777666544322234455566667778999999999998 444433 3455
Q ss_pred HHHHHHHHhccccCCCcccchhhHHHHHH
Q 013497 209 TGKIIEDWFSGQKVNGVSCDLGLVKNAVL 237 (442)
Q Consensus 209 t~~~li~~~~~~~~~~~~~~~~~~~~a~~ 237 (442)
+..+|...+ .+.++.......+.+|+.
T Consensus 419 ~V~aiv~l~--~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 419 TVGAIVALY--YKIKDNDSASAVLDSAIK 445 (652)
T ss_pred HHHHHHHHH--HhccCCccHHHHHHHHHH
Confidence 677777777 555555556666777765
No 204
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.65 E-value=29 Score=32.73 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cCCCCCCchhhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc
Q 013497 38 DLTTAISLYESAHS-QNLRLSLHHFNALLYLCSD-SATDPSSKDSALRHGFRVFDQMLS-NNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 38 ~~~~A~~lf~~m~~-~g~~p~~~ty~~ll~~~~~-~~~~~~~~~~~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~ 114 (442)
.+.+|+.+|+...- ..+--|..+-..||+.... .+- .+..-.++.+.+.. .|..++..+..++|..+++.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-------~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~ 215 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-------KLNALYEVVDFLVSTFSKSLTRNVIISILEILAES 215 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-------chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhc
Confidence 35677777774322 3466677888888885444 221 23334555555543 45678888999999999999
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH-----MGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-----M~~~g~~p~~~ty~~li~ 180 (442)
+++..-+++++.-....+-.-|.+.|...|..-.+.||..-+..+.++ +.+.++..+...-..|-+
T Consensus 216 ~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 216 RDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 999999999988762324566889999999999999998766666553 133455555554444333
No 205
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.04 E-value=8.7 Score=36.14 Aligned_cols=115 Identities=13% Similarity=-0.040 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 84 HGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 84 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
+...+=+.|+..|= -+.+.+++.+|+..+.+-. . +.| |.+-|..=-.+|++.|.++.|++=.+.
T Consensus 76 e~~~~AE~LK~eGN------------~~m~~~~Y~eAv~kY~~AI-~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGN------------KLMKNKDYQEAVDKYTEAI-E--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHH------------HHHHhhhHHHHHHHHHHHH-h--cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45566666776662 3468889999999999887 4 454 567778888899999999999887666
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 163 MGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 163 M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
-... .| -..+|..|=.+|...|++++|.+.|++-. .+.|+-.+|..=+.+-
T Consensus 141 Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 141 ALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKIA 192 (304)
T ss_pred HHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHHH
Confidence 5543 23 24578888888999999999999887654 3578888887777666
No 206
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.81 E-value=9.9 Score=40.72 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=96.1
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-CCC----
Q 013497 25 NFLINLQ--SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-NNV---- 97 (442)
Q Consensus 25 ~~~~li~--~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~-~g~---- 97 (442)
|--++++ .|.-.|+.+.|.+-.+-++.. ..|..|-+.|.+.. ++|-|.-.+..|.. +|.
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~--------RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTR--------RLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhc--------cccHHHHhhhhhhhhhhHHHHH
Confidence 4455554 477889999998888777654 67999999999988 88888888877764 221
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 98 ----IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 98 ----~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
.|+ .+=.-+.-.....|.+++|+.++.+.+ + |..|=..|-..|.+++|+++-+.=-.--++ .
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~ 859 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---N 859 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceehh---h
Confidence 132 222233334467899999999999988 4 445556677899999999986653322222 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
||-....-+-..++.+.|++.|++
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHh
Confidence 444444444445556665555443
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.63 E-value=51 Score=34.62 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Q 013497 283 ETERFAQSVAALAMEREVKANFSEFQDWLEK 313 (442)
Q Consensus 283 d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~ 313 (442)
|...|-+.-.+|-+.|.-.||..++++.-..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 5666777777888999988998888877543
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=85.49 E-value=39 Score=33.25 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhC-CC-CCCc-ccHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEF-NV-VPRL-RTYDPALFCFCE---NLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~-g~-~p~~-~ty~~li~~~~~---~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
.++-+|-...+++...++++.|. .. .+ .++. ..--...-++.+ .|+.++|..++..+....-.++..||..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~-~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLE-ALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhh-ccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 44446888999999999999998 42 11 1111 111122334445 899999999999977777778888888887
Q ss_pred HHHHh
Q 013497 180 KVSAE 184 (442)
Q Consensus 180 ~~~~~ 184 (442)
+.|..
T Consensus 225 RIyKD 229 (374)
T PF13281_consen 225 RIYKD 229 (374)
T ss_pred HHHHH
Confidence 77643
No 209
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.42 E-value=14 Score=34.70 Aligned_cols=101 Identities=12% Similarity=0.078 Sum_probs=80.4
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCH
Q 013497 75 PSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEA 153 (442)
Q Consensus 75 ~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~ 153 (442)
...+++++.+|+..|.+..+... -|.+-|.-=..+|++.|..+.|.+=-+.-. .+.|. ..+|..|=.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 44577899999999999877532 377888889999999999999988776655 34453 47899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
++|.+-|..-.+ +.|+..+|..=|+.
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999887664 67888877654443
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.00 E-value=21 Score=35.86 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
.|+.+-.+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...| ++++|.+.|++..+.
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LG--------r~dEAla~LrrALel 141 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYRE--------EGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Confidence 8888888999999999999999997765 4553 34666666777777 899999999988764
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.68 E-value=16 Score=38.02 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ-------- 173 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-------- 173 (442)
.+.-.+..-+-+...+..|.++|..|- . -..+++.....+++++|+.+-+...+ +.||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 344444444555666777888887776 2 23567777888999999988777654 344432
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 174 ---EIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 174 ---ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
-|..-=.+|-++|+..+|.++++++-..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 2444456788899999999999888654
No 212
>PLN02789 farnesyltranstransferase
Probab=81.59 E-value=52 Score=31.73 Aligned_cols=140 Identities=7% Similarity=0.019 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY---LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
++..+-..+.+.+..++|+.+.+++.+.. | ..|++-.. ++...+ ..++++++.++.+.+...+ +.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P--~~ytaW~~R~~iL~~L~-------~~l~eeL~~~~~~i~~npk-ny 106 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--P--GNYTVWHFRRLCLEALD-------ADLEEELDFAEDVAEDNPK-NY 106 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--c--hhHHHHHHHHHHHHHcc-------hhHHHHHHHHHHHHHHCCc-ch
Confidence 56666666677777777777777766432 2 22222211 111111 0356677777776655433 33
Q ss_pred HHHHHHHHHHHhcCCH--HHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDG--DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~--~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
.+|+----.+-+.|+. ++++.+++.+. +.. .-|..+|+.---.+.+.|++++|++.++.+.+.+.. +...|+-..
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal-~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKIL-SLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 3455333333444442 45666666665 321 124455666556666666677777777777665543 334444433
No 213
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=45 Score=30.86 Aligned_cols=167 Identities=9% Similarity=0.039 Sum_probs=116.8
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
..|+. .|--++-+..-.|+.+-|...++.+.+.= |...-...|=. .+...+ +.++|.++|+...+..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~--------~~~~A~e~y~~lL~dd 116 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG--------NYKEAIEYYESLLEDD 116 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh--------chhhHHHHHHHHhccC
Confidence 44555 66666666777788889999999887652 44332222222 233344 7999999999998877
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-QEI 175 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty 175 (442)
+-|.++|--=|...-..|+.-+|++-+.+.. + .+.-|...|.-|-..|...|++++|.--+++|.-. .|.. ..+
T Consensus 117 -pt~~v~~KRKlAilka~GK~l~aIk~ln~YL-~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f 191 (289)
T KOG3060|consen 117 -PTDTVIRKRKLAILKAQGKNLEAIKELNEYL-D-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYF 191 (289)
T ss_pred -cchhHHHHHHHHHHHHcCCcHHHHHHHHHHH-H-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHH
Confidence 5688888877777777777778887777766 3 35779999999999999999999999999999865 3433 334
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhc
Q 013497 176 AALLKVSAE---TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 176 ~~li~~~~~---~g~~~~a~~ll~~m~~~ 201 (442)
..+-+.+-- ..+.+-+.+++.+-.+.
T Consensus 192 ~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 192 QRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 444444332 33566677777665543
No 214
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.94 E-value=30 Score=30.20 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL--HHFNALLYLCSDSA 72 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~--~ty~~ll~~~~~~~ 72 (442)
.+..+-+-|++.|+.+.|++.|.++++....|.. ..+-.+|..+...+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence 6777777888888888888888887766543332 22333444444444
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.85 E-value=40 Score=31.80 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHH--HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS-QNLRLSLHHFNALLY--LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~-~g~~p~~~ty~~ll~--~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.|-.|=..|.+.|+.+.|..-|.+..+ .|- |...+..+-. .++.++. .-.++.++|+++..... -|+
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~-------~ta~a~~ll~~al~~D~-~~i 227 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQ-------MTAKARALLRQALALDP-ANI 227 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhcCC-ccH
Confidence 677777777777777777777776543 232 2333333322 1222221 34456677777655432 244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC 146 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~ 146 (442)
.+-.-|-..+...|++.+|...++.|. +. .|....+..+|..
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL-~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLL-DL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-hc--CCCCCchHHHHHH
Confidence 444555566667777777777777776 32 4444555555543
No 216
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.56 E-value=18 Score=31.53 Aligned_cols=96 Identities=8% Similarity=-0.055 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH-----
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQ----- 173 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~----- 173 (442)
..+..+..-|++.|+.++|++.|.++. .....|.. -.+-.+|....-.+++..+..........--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 567888999999999999999999998 66555443 456677888888999998888777665432121 222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 174 -EIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 174 -ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.|..|. +...+++.+|-+.|-+...
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccCc
Confidence 222222 2337889999888876643
No 217
>PLN02789 farnesyltranstransferase
Probab=80.50 E-value=57 Score=31.47 Aligned_cols=118 Identities=11% Similarity=-0.007 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC--HHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKN-DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE--AEKAY 157 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~--~~~A~ 157 (442)
..++|+.++++..+.... +..+|+.--..+.+.| .+++++..++++. ... .-+..+|+.---.+-+.|+ .+++.
T Consensus 52 ~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVA-EDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHH-HHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 567788888887654322 3345554444555666 6799999999988 432 2233456655444555665 36788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
++++.+.+..-. +..+|+-.--.+.+.|+++++.+.+.++.+..
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 889888876543 67888888888888899999999999998764
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.47 E-value=26 Score=32.24 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHh---CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCCCCc-ccHHHHHHHHHHcC
Q 013497 81 ALRHGFRVFDQMLS---NN--VIPNEASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVVPRL-RTYDPALFCFCENL 151 (442)
Q Consensus 81 ~~~~a~~l~~~M~~---~g--~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~p~~-~ty~~li~~~~~~g 151 (442)
++++|+++|.+-.. .+ -..-.-.|..+-+++++...+++|-..|..-.. ...-.|+. ..|-..|-.|.-..
T Consensus 125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~ 204 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAH 204 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHH
Confidence 46666666655332 11 111233455666777888888877666654320 00001221 33556666677778
Q ss_pred CHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 152 EAEKAYEVEEHMGLM---GLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 152 ~~~~A~~l~~~M~~~---g~~p~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
|+..|...++.-.+. .-.-+..+...||.+| ..|+.+++..++
T Consensus 205 Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 205 DYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 899999999885433 2233667888999998 788888877766
No 219
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=80.22 E-value=7.3 Score=31.14 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=59.6
Q ss_pred ChhhHHHHHHHHHHhcCCCccEEEccCccccC----CCCChhhHHHHHHHHhcCeEEeCCCCCCccHH--HHHHHHhcCc
Q 013497 339 SVPQLDAVVKKLYERSGNKWPLVILHNKRLRS----LWENPSHRNLVEEWNEKGVLYMTPHGSNDDWY--WLYAAVKLRC 412 (442)
Q Consensus 339 ~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~~--~l~aa~~~~~ 412 (442)
..+.+-+++=+|.=+ |+++++.||.-.... ....-.+...++.|.+.+.+=|......-+|+ .+..|-++++
T Consensus 8 pVk~L~eIll~Filr--GHKT~vyLP~yY~~~~~~~~~~kvDd~~~F~~L~~l~lIkFi~~~~~~~~~~eV~~~Aek~~G 85 (122)
T PF14626_consen 8 PVKALVEILLHFILR--GHKTVVYLPKYYKNYVDDGGISKVDDLEAFQFLCDLDLIKFIEKRNRKKWFNEVLDEAEKTHG 85 (122)
T ss_pred cHHHHHHHHHHHHhc--cCeeEEEChHHHhcccccccccccchHHHHHHHHhcCceeeeccccHHHHHHHHHHHHHHcCc
Confidence 455566666666667 679999998665432 11123456778999999999777777666664 5667777899
Q ss_pred EEEecCccccch
Q 013497 413 LLVTNDEMRDHI 424 (442)
Q Consensus 413 ~~vsnD~~rdh~ 424 (442)
++|||.++|--.
T Consensus 86 I~VSs~E~~~~~ 97 (122)
T PF14626_consen 86 IFVSSSEYRRRN 97 (122)
T ss_pred EEECCHHHhccc
Confidence 999999987543
No 220
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.98 E-value=22 Score=37.67 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
+-.+|.++-.+. -.||-..|=.=+.+++..++|++-+++-+.++ ...-|-+.+.+|.+.|+.++|.+.+
T Consensus 699 ~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 699 QNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred chHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHHHhcccHHHHhhhh
Confidence 567777776665 46888888888999999999998888776666 2567888999999999999999887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
..... +.....+|.+.|++.+|.++--+
T Consensus 768 prv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 768 PRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 66532 12677888888988888765443
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=79.15 E-value=19 Score=36.47 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
+.|+.++|.+.|.+|.+.....-+......||.++...+...++..++..
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34555555555555431111111122334444555555555555444444
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.07 E-value=69 Score=31.57 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-L-RLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g-~-~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
..+.|+ +|-...+++.-+++++.|...- + .++....--+.. +..+.. +.|+.++|++++..+....-.++.
T Consensus 144 v~~lll-SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn-----~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 144 VINLLL-SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN-----KPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHH-HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc-----cCCCHHHHHHHHHHHHhccCCCCh
Confidence 444444 5888999999999999998642 1 112111111111 233311 134899999999997776667777
Q ss_pred HHHHHHHHHHHh---------cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH----HHHHHH---HH-HH
Q 013497 102 ASVTSVARLAAS---------KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE----KAYEVE---EH-MG 164 (442)
Q Consensus 102 ~ty~~li~~~~~---------~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~----~A~~l~---~~-M~ 164 (442)
-||..+-+.|-. ....+.|...+.+- +.+.||..+=-.+...+...|.-. +..++- .. ..
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 888877766532 22467788877653 455676654333333333444322 222222 22 22
Q ss_pred HCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 165 LMG---LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 165 ~~g---~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+.| -..|-.-+.+++.++.-.|+.++|.+..++|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 333 3446667789999999999999999999999866
No 223
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.83 E-value=4 Score=25.00 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKR 126 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~ 126 (442)
|+.|-..|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555444
No 224
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.38 E-value=4.5 Score=24.76 Aligned_cols=23 Identities=22% Similarity=0.088 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 013497 140 YDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~ 162 (442)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566666666655555
No 225
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=78.31 E-value=7.3 Score=33.63 Aligned_cols=39 Identities=21% Similarity=0.134 Sum_probs=24.1
Q ss_pred cCeEEeCCCCCCccHHHHHHHHhc-----CcEEEecCcc-ccchh
Q 013497 387 KGVLYMTPHGSNDDWYWLYAAVKL-----RCLLVTNDEM-RDHIF 425 (442)
Q Consensus 387 ~~~~~~~~~~~~DD~~~l~aa~~~-----~~~~vsnD~~-rdh~~ 425 (442)
.-.+.+|+.+..-|-|+.-.+-.. .+.+||+|.. +.+.+
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~ 111 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAAR 111 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHh
Confidence 446788888655555554444432 5799999965 44433
No 226
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.30 E-value=22 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=28.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
+.+.|++++|..+.+.+ ..||...|-+|-.. +.|..+++..-+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 44566666666665554 35666666555443 4566665655555555554
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=77.65 E-value=84 Score=31.76 Aligned_cols=165 Identities=10% Similarity=0.099 Sum_probs=103.5
Q ss_pred HH--HHHHHHHHhc-----CCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcC-CCCCC-chhhHHHHHHHHHHHHh
Q 013497 25 NF--LINLQSCTKS-----KDLTTAISLYESAH-SQNLRLSLHHFNALLYLCSDSA-TDPSS-KDSALRHGFRVFDQMLS 94 (442)
Q Consensus 25 ~~--~~li~~~~k~-----g~~~~A~~lf~~m~-~~g~~p~~~ty~~ll~~~~~~~-~~~~~-~~~~~~~a~~l~~~M~~ 94 (442)
.| ...+.+.... -+.+.|+.+|.+.. .+.+.|+-..--.++..|.-.. ..+.. ......+|.++-+.-.+
T Consensus 253 a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 253 HYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred chhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 55 5556655542 24678999999987 3345665433333333222211 11111 45577888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCC
Q 013497 95 NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMG-LMGLSL 170 (442)
Q Consensus 95 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~-~~g~~p 170 (442)
.+. -|..+...+-.++.-.++.+.|..+|+.-. .+.||. ..|..++.+ -+|+.++|.+.+++-. -.-...
T Consensus 333 ld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~--~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 333 ITT-VDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHF--HNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCchhh
Confidence 664 377777777777788888999999999977 456765 344444443 4899999999998843 333333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 171 EQQEIAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~~~a~~ll~ 196 (442)
-.......|+.|+..+ ++.|.+++-
T Consensus 407 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 407 KAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 4445556666776665 455655553
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=77.24 E-value=26 Score=29.36 Aligned_cols=83 Identities=6% Similarity=0.015 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..|+.-..+ .+.|++++|.+.|+.+..+.-..| ....---|+.+|.+.++.++|...+++..+..-.--.+-|...+.
T Consensus 12 ~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344443333 456788888888888772221111 113344567778888888888888777665432222244666666
Q ss_pred HHHhc
Q 013497 181 VSAET 185 (442)
Q Consensus 181 ~~~~~ 185 (442)
|++.-
T Consensus 91 gL~~~ 95 (142)
T PF13512_consen 91 GLSYY 95 (142)
T ss_pred HHHHH
Confidence 65543
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.51 E-value=29 Score=35.46 Aligned_cols=128 Identities=13% Similarity=0.004 Sum_probs=84.4
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCC---
Q 013497 25 NFLINLQSCTK----SKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNN--- 96 (442)
Q Consensus 25 ~~~~li~~~~k----~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g--- 96 (442)
.|...+..++- ..+.+.|.++++.+.+. -|+..-|.-.-. .+...| ++++|.+.|+......
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g--------~~~~Ai~~~~~a~~~q~~~ 300 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKG--------NLEEAIESFERAIESQSEW 300 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc--------CHHHHHHHHHHhccchhhH
Confidence 56666665554 45788999999999865 688877766665 666666 8999999999765311
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHH-HHHcCCH-------HHHHHHHHHHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC-FCENLEA-------EKAYEVEEHMG 164 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~-~~~~g~~-------~~A~~l~~~M~ 164 (442)
.+.....+=-+.-.++-..+|++|.+.|..+.+...- +..+|.-+..+ +...|+. ++|.++|.+..
T Consensus 301 ~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 301 KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 1122334444455577788999999999999822222 22333333322 3346666 77778877764
No 230
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=76.31 E-value=55 Score=28.93 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
..+..+..+.=|.+.+++=.. .+..+.|++..--.|-......| +..+|...|++-..-=+.-|....-.
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~--~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d~a~lLg 129 (251)
T COG4700 60 HTLLMALQQKLDPERHLREAT--EELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHDAAMLLG 129 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHH--HHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCCHHHHHH
Confidence 344445555555554432222 22345676665555666777777 89999999999876556678888889
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT---YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+.++....+++.+|..+++... +.. |.-++ --.+-..|...|....|+.-|+.....--.|....| .-..+.
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~-e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La 204 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLM-EYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLA 204 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHh-hcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHH
Confidence 9999999999999999999987 543 44433 333446677888888899999888776333333332 223445
Q ss_pred hcCCHHHHHHHHHHH
Q 013497 184 ETGRVEKVYQYLQKL 198 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m 198 (442)
+.|+.+++..-+.++
T Consensus 205 ~qgr~~ea~aq~~~v 219 (251)
T COG4700 205 KQGRLREANAQYVAV 219 (251)
T ss_pred HhcchhHHHHHHHHH
Confidence 667666655444333
No 231
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=76.27 E-value=73 Score=33.40 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHH--HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhC
Q 013497 55 RLSLHHFNALLY--LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE-ASVTSVARLAASKNDGDYAFVLIKRMNNEF 131 (442)
Q Consensus 55 ~p~~~ty~~ll~--~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~~ 131 (442)
+|++..|+...- -+-..| .++.|....+.... -.|+. --|.+=.+.+..+|++++|..++++.+ +.
T Consensus 366 ~PttllWt~y~laqh~D~~g--------~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-el 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLG--------DYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-EL 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-hc
Confidence 566666655432 344445 89999999997754 34543 345555688999999999999999988 44
Q ss_pred CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----------HHHHhcCCHHHHHHHHHHHH
Q 013497 132 NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL----------KVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 132 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li----------~~~~~~g~~~~a~~ll~~m~ 199 (442)
. .||...=+-...-..++.+.++|.++.......|. +..-+-+-+ .+|.+.|++..|.+=|+...
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 3 45554444666677789999999999998888775 332222222 34666777777766555543
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.27 E-value=52 Score=30.60 Aligned_cols=103 Identities=11% Similarity=-0.068 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLE-QQEI 175 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~-~~ty 175 (442)
...|+.-+..| +.|++.+|...|.... +. ..-+.. .+==|-.++...|+.++|-.+|..+... +-.|- ...+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi-~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFI-KK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHH-Hc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 34666666654 5566888888887776 32 121222 2333567777888888888888777654 22222 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 176 AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
--|-....+.|+.++|...|+++.+. .|+..
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 44555666788888888888888765 56554
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.11 E-value=91 Score=31.41 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHH--HcCC
Q 013497 80 SALRHGFRVFDQMLSNNVI----P-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC--ENLE 152 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~----p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~--~~g~ 152 (442)
+++.+|..+|.+..+.--. . .++.-+-+|++|... +.+.....+.+..+.. | ...|-+|..++. +.++
T Consensus 20 ~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHHHhhh
Confidence 3889999999887653211 1 255667888888875 6666666666666233 3 344666665543 7788
Q ss_pred HHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC----CChHHHHHHH
Q 013497 153 AEKAYEVEEHMGLM--GLSL------------EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC----VNEETGKIIE 214 (442)
Q Consensus 153 ~~~A~~l~~~M~~~--g~~p------------~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~----p~~~t~~~li 214 (442)
.++|.+.+..-.++ +-.| |..-=+..+.++...|.+.++..++++|...-.. -+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 99999888777665 3332 2222345677888999999999999998775444 7888888766
Q ss_pred HHh
Q 013497 215 DWF 217 (442)
Q Consensus 215 ~~~ 217 (442)
-.+
T Consensus 175 lml 177 (549)
T PF07079_consen 175 LML 177 (549)
T ss_pred HHH
Confidence 666
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.30 E-value=69 Score=29.63 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=22.3
Q ss_pred HhHHHHHHhhHHHHHHHHHHcCCcceEEecc
Q 013497 294 LAMEREVKANFSEFQDWLEKNANYEAIVDGA 324 (442)
Q Consensus 294 ~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~ 324 (442)
|.+.|....|...|++|+++......+-+++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL 207 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREAL 207 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHH
Confidence 4455666688999999999866555665655
No 235
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=73.66 E-value=38 Score=28.48 Aligned_cols=98 Identities=7% Similarity=0.071 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC-----CCCcccHHHHHHHHHHcCC-HHHHHH
Q 013497 87 RVFDQMLSNNVIPNE--ASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-----VPRLRTYDPALFCFCENLE-AEKAYE 158 (442)
Q Consensus 87 ~l~~~M~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----~p~~~ty~~li~~~~~~g~-~~~A~~ 158 (442)
+....|.+.+..+++ ...|.++.-.+..+.+...+.+++.+. .... ..+-.+|.+++.+.++..- ---+..
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~ 101 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLT 101 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHHHHHHHccChHHHHHHHH
Confidence 333445555555554 344666666666667777666666665 2110 1233456666666655444 223455
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 013497 159 VEEHMGLMGLSLEQQEIAALLKVSAET 185 (442)
Q Consensus 159 l~~~M~~~g~~p~~~ty~~li~~~~~~ 185 (442)
+|.-|.+.+..++..-|..||.++.+.
T Consensus 102 Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 102 LFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 666666656666666666666665443
No 236
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.51 E-value=67 Score=35.54 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=60.0
Q ss_pred CchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHH--HHHHHcCCHH
Q 013497 77 SKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL--FCFCENLEAE 154 (442)
Q Consensus 77 ~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li--~~~~~~g~~~ 154 (442)
.+.++..+|..-|+.-....+ -|...|..+..+|.++|+...|.++|.... -+.|+. +|.-.- ..-|..|..+
T Consensus 573 Lea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHh-HHHHHHHHHHHHHhhhHH
Confidence 344477888888877665443 378899999999999999999999998866 345643 333222 2346788899
Q ss_pred HHHHHHHHHHH
Q 013497 155 KAYEVEEHMGL 165 (442)
Q Consensus 155 ~A~~l~~~M~~ 165 (442)
+|...+.....
T Consensus 648 eald~l~~ii~ 658 (1238)
T KOG1127|consen 648 EALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHH
Confidence 98888777643
No 237
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.43 E-value=55 Score=27.64 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 158 (442)
.++++..+++.|.-.-.. |..-+|-..| +...|+|++|..+|++.. +.+ ....|...+.++|-...-|-.++
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~-~~~---~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELL-SSA---GAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhh-ccC---CCchHHHHHHHHHHHhcCChHHH
Confidence 566666666666543221 2333443333 345666777777776666 322 12245555666665444443333
No 238
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.36 E-value=72 Score=32.61 Aligned_cols=47 Identities=4% Similarity=-0.123 Sum_probs=24.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 194 (442)
+.+.|++..|...|.+++... +-|...|..---+|.+.|.+..|..=
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D 414 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD 414 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555555555555555544 22445555555555555555555443
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=73.31 E-value=34 Score=34.68 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=85.8
Q ss_pred HHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013497 33 CTKSKDLTTAISLYES-AHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~-m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 111 (442)
..-+++++++.++... -.-..+ +..-.+.++..+.+.| ..+.|+++-.+-. .=....
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G--------~~e~AL~~~~D~~------------~rFeLA 328 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKG--------YPELALQFVTDPD------------HRFELA 328 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT---------HHHHHHHSS-HH------------HHHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCC--------CHHHHHhhcCChH------------HHhHHH
Confidence 3446788887776652 111222 2455778888777777 7888888765432 345566
Q ss_pred HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013497 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (442)
Q Consensus 112 ~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 191 (442)
.+.|+++.|.++.++.. +...|..|-....+.|+++-|.+.|..... |..|+--|.-.|+.++.
T Consensus 329 l~lg~L~~A~~~a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 329 LQLGNLDIALEIAKELD-------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHCT-HHHHHHHCCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhcCCHHHHHHHHHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 78999999988865544 566899999999999999999999887653 56777777788888877
Q ss_pred HHHHHHHHhcc
Q 013497 192 YQYLQKLRSTV 202 (442)
Q Consensus 192 ~~ll~~m~~~~ 202 (442)
.++...-...|
T Consensus 393 ~kl~~~a~~~~ 403 (443)
T PF04053_consen 393 SKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcc
Confidence 77776655543
No 240
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.30 E-value=69 Score=32.21 Aligned_cols=138 Identities=5% Similarity=-0.067 Sum_probs=84.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CC---C-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHSQNL-RL---S-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVA 108 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~-~p---~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li 108 (442)
-|.+++.+|.++|.+..++-- .| . .+.-+-+|++|-... ++..........+.. | ...|-.|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n---------ld~Me~~l~~l~~~~--~-~s~~l~LF 84 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN---------LDLMEKQLMELRQQF--G-KSAYLPLF 84 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh---------HHHHHHHHHHHHHhc--C-CchHHHHH
Confidence 367889999999998764421 11 1 233455666666553 555555555554421 2 22344444
Q ss_pred HHH--HhcCCHHHHHHHHHHhHhhC--CCC------------CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 013497 109 RLA--ASKNDGDYAFVLIKRMNNEF--NVV------------PRLRTYDPALFCFCENLEAEKAYEVEEHMGLM----GL 168 (442)
Q Consensus 109 ~~~--~~~g~~~~A~~~~~~m~~~~--g~~------------p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g~ 168 (442)
.++ .+.+..++|.+.+..-. .. +-. +|-.-=+..++++...|++.++..+++.|... ..
T Consensus 85 ~~L~~Y~~k~~~kal~~ls~w~-~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQALSVWK-EQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHhhhHHHHHHHHHHHH-hhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 432 46778888888887665 32 222 22233366778888999999999888888654 33
Q ss_pred CCCHHHHHHHHHHHHh
Q 013497 169 SLEQQEIAALLKVSAE 184 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~ 184 (442)
..+..+|+.++-.+.+
T Consensus 164 ~w~~d~yd~~vlmlsr 179 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSR 179 (549)
T ss_pred cccHHHHHHHHHHHhH
Confidence 4688888876555544
No 241
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.68 E-value=62 Score=27.92 Aligned_cols=126 Identities=8% Similarity=0.026 Sum_probs=86.9
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 18 TNPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 18 ~~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
.+.+|+. .|..+|+.+.+.|....- ..+...++-||.......|-...... ..-..-|.+++.++.
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~------~~~~Ql~lDMLkRL~--- 89 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQY------PPAYQLGLDMLKRLG--- 89 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccC------hHHHHHHHHHHHHhh---
Confidence 4555665 999999999999986654 55667777777766665553222211 003444666666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
..+..++..+...|++-+|+++.+... . -+......++.+..+.+|...=..+|+-..+.
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~~-~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQYH-K----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHcC-C----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 247788899999999999999998864 2 23445677888888888877766777666554
No 242
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.75 E-value=32 Score=31.09 Aligned_cols=77 Identities=10% Similarity=-0.006 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLK 180 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~li~ 180 (442)
|.+.-|+.+.+.+.+.+|+.+.++-. +.+ .-|.-+-..+++.||-.|++++|..-++-.... ...+...+|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qV-kak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQV-KAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHH-hcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 45566778888889999999888766 432 335666778889999999999998766554332 34445667777776
Q ss_pred H
Q 013497 181 V 181 (442)
Q Consensus 181 ~ 181 (442)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 243
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.33 E-value=15 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~ 215 (442)
+.|...++..++++|++.|+..++..+..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 56666666666666666666666666655543
No 244
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=71.25 E-value=12 Score=30.92 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCeEE-eCCCC------CCccHHHHHHHHhcCc-EEEecCc
Q 013497 378 RNLVEEWNEKGVLY-MTPHG------SNDDWYWLYAAVKLRC-LLVTNDE 419 (442)
Q Consensus 378 ~~~~~~~~~~~~~~-~~~~~------~~DD~~~l~aa~~~~~-~~vsnD~ 419 (442)
...+..+.+.+.++ .+|.. --||.+||-.|+.+++ +|||-|.
T Consensus 64 ~~~v~~l~~~~~~i~I~p~~~f~~~RDp~Dn~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 64 GELVLVLFESVSLIAINPLEKFNICRDPKDNKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHHhheeEeecccccccccCCchHHHHHHHHHhccCCEEEEcch
Confidence 35667777777777 55554 3589999999999988 9999997
No 245
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=71.03 E-value=68 Score=29.51 Aligned_cols=74 Identities=7% Similarity=0.036 Sum_probs=50.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY----DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
....+.+.|++++|.+.|++.. .. -|+...- --+..+|.+.++.++|...+++..+.--.-...-|...+.|.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~-~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALD-NR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3344467899999999999998 42 4544222 234567789999999999999987763222234455556665
Q ss_pred H
Q 013497 183 A 183 (442)
Q Consensus 183 ~ 183 (442)
+
T Consensus 115 ~ 115 (243)
T PRK10866 115 T 115 (243)
T ss_pred h
Confidence 4
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.63 E-value=72 Score=31.49 Aligned_cols=95 Identities=11% Similarity=-0.075 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..+++.|.-+|.+.+++.+|++.-.... ..+ ++|+...=-==.+|...|+++.|+..|+.+.+. .|+...-+.=|.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvL-e~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVL-ELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHH-hcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 3455666666777777777776666655 321 223322222234555666677777777776653 454444443333
Q ss_pred HHHh-cC-CHHHHHHHHHHHH
Q 013497 181 VSAE-TG-RVEKVYQYLQKLR 199 (442)
Q Consensus 181 ~~~~-~g-~~~~a~~ll~~m~ 199 (442)
.|.+ .. ..++..+++..|-
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 3322 11 2233345555553
No 247
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=70.47 E-value=16 Score=24.21 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=31.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY 66 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~ 66 (442)
....+.|-+.++..++++|.+.|+..+...|..++.
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345668889999999999999999999999988876
No 248
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=70.26 E-value=0.87 Score=38.02 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIK 125 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~ 125 (442)
.+....++++.+...+..-+....|.++..|++.++.+...++++
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 22 QPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp -GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred CHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444433444555555555555544444444443
No 249
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.13 E-value=35 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.061 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
++.+-++.+....+.|+.....+-+++|.+..++..|.++|+-.+.+.-. ...+|..++.-.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~lqei 86 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHHHHH
Confidence 34444555556677777777777777777777777777777766644221 344555555444
No 250
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=69.93 E-value=65 Score=35.65 Aligned_cols=114 Identities=13% Similarity=0.166 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH--------------------------------
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN-------------------------------- 128 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~-------------------------------- 128 (442)
+..+|...|+...+..- -|......+.+.|++...+++|+.+.-.--
T Consensus 507 Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 45567777776644322 255667777888888888888877732211
Q ss_pred -hhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 013497 129 -NEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV--SAETGRVEKVYQYLQKL 198 (442)
Q Consensus 129 -~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~--~~~~g~~~~a~~ll~~m 198 (442)
+...+.| |...|..+-.+|...|....|.++|..... +.|+. +|.-.-.+ -|..|.+.+|...+...
T Consensus 586 QsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 586 QSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 0011122 334555666666666666666666655433 23332 22222221 23456666666655554
No 251
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=69.90 E-value=10 Score=24.30 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
++..+-..|.+.|++++|.++|++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666665
No 252
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.35 E-value=1.3e+02 Score=30.10 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=27.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 146 CFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 146 ~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
.+...|+.++|.--|+.... +.| +..+|..|+.+|...|.+.+|.-+-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred HHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 34455666666666665443 232 4456666666666666666665443
No 253
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=68.78 E-value=5.1 Score=35.57 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHHHhHHHHHH-------hhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcChhhHHHHHHH
Q 013497 277 VDIDDAETERFAQSVAALAMEREVK-------ANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKK 349 (442)
Q Consensus 277 ~~l~~~d~~~~~~~I~~~~~~g~~~-------~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~ 349 (442)
|+++++|..+=......|+...... .+++.|...- ...+|+|+=|+- +..|++++++.+++-
T Consensus 65 f~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gid--Ts~pn~VVigla---------pe~F~y~~ln~AFrv 133 (262)
T KOG3040|consen 65 FDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGID--TSDPNCVVIGLA---------PEGFSYQRLNRAFRV 133 (262)
T ss_pred CCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCcc--CCCCCeEEEecC---------cccccHHHHHHHHHH
Confidence 6677777766666667777776643 5666665432 237788887753 347899999999999
Q ss_pred HHHhcCCCccEEEccCcc
Q 013497 350 LYERSGNKWPLVILHNKR 367 (442)
Q Consensus 350 l~~~~~~~~~l~~l~~~~ 367 (442)
+.+. .+.+|+-+|+.+
T Consensus 134 L~e~--~k~~LIai~kgr 149 (262)
T KOG3040|consen 134 LLEM--KKPLLIAIGKGR 149 (262)
T ss_pred HHcC--CCCeEEEecCce
Confidence 9987 445566667654
No 254
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.60 E-value=20 Score=28.10 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFC 146 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~ 146 (442)
..+-++.+......|+.....+.+++|-+.+++..|.++|+-.+.+. .+....|..+|+-
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHHH
Confidence 34444455555677888888888888888888888888887776222 3333366666543
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.58 E-value=75 Score=27.19 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 159 (442)
..+++..+++-|...-.. |..-++-.+| +...|+|.+|..+|+++. .. +-...|...+.++|-...-|..++.
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~-~~---~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELE-ER---APGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHh-cc---CCCChHHHHHHHHHHHHcCChHHHH
Confidence 566666666666543221 2223333333 345666666666666665 32 1233344455555544444444444
Q ss_pred H
Q 013497 160 E 160 (442)
Q Consensus 160 ~ 160 (442)
+
T Consensus 99 ~ 99 (160)
T PF09613_consen 99 Y 99 (160)
T ss_pred H
Confidence 3
No 256
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.58 E-value=93 Score=29.38 Aligned_cols=99 Identities=9% Similarity=-0.057 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCC-HHH
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE---NLEAEKAYEVEEHMGLMGLSLE-QQE 174 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~---~g~~~~A~~l~~~M~~~g~~p~-~~t 174 (442)
-|...|-.|=..|...|+.+.|..-|..-.+-.|= |...+..+-.++.. ..+-.++..+|+++.... |+ ..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHH
Confidence 47889999999999999999999999987722332 23333333333332 223457889999998753 44 444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
...|-..+...|++.+|...++.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555556788899999999999999876
No 257
>PRK15331 chaperone protein SicA; Provisional
Probab=68.57 E-value=39 Score=29.07 Aligned_cols=88 Identities=7% Similarity=-0.112 Sum_probs=56.2
Q ss_pred HHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 013497 111 AASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190 (442)
Q Consensus 111 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 190 (442)
+-..|++++|..+|.-.. ..+. -|..-+..|-.++-..+++++|...|......+. -|...+=-.-.++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~-~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLC-IYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 456788888888888776 4321 1233344444555567888888888876654432 133333345567778888888
Q ss_pred HHHHHHHHHhc
Q 013497 191 VYQYLQKLRST 201 (442)
Q Consensus 191 a~~ll~~m~~~ 201 (442)
|...|......
T Consensus 124 A~~~f~~a~~~ 134 (165)
T PRK15331 124 ARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHhC
Confidence 88888877663
No 258
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=68.04 E-value=25 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 86 FRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.+-++.+......|+.....+.+++|-+.+++..|.++|+-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444445556666666666666666666666766666555
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.76 E-value=2.6 Score=35.04 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 185 (442)
.+|+.+.+.+.++....+++.+. ..+-.-+....+.++..|++.+..++..++++.. .. .-...+++.|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~-~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~-----yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALV-KENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NN-----YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHH-HTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SS-----S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-hcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cc-----cCHHHHHHHHHhc
Confidence 56778888999999999999998 6555566788999999999999888888888721 12 2335677777888
Q ss_pred CCHHHHHHHHHHHHhc
Q 013497 186 GRVEKVYQYLQKLRST 201 (442)
Q Consensus 186 g~~~~a~~ll~~m~~~ 201 (442)
|.++++..++.++...
T Consensus 84 ~l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNH 99 (143)
T ss_dssp TSHHHHHHHHHCCTTH
T ss_pred chHHHHHHHHHHcccH
Confidence 8888888888776543
No 260
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.53 E-value=24 Score=27.98 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
-|..|+..|-..|..++|.+++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366666666666666666666666655
No 261
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.53 E-value=74 Score=26.74 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=70.1
Q ss_pred HHHhHhhCCCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 013497 124 IKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMG-----LSLEQQEIAALLKVSAETGR-VEKVYQYL 195 (442)
Q Consensus 124 ~~~m~~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-----~~p~~~ty~~li~~~~~~g~-~~~a~~ll 195 (442)
...|+ +.+..+++ ...|.++.-....+.......+++.+..-. -..+..+|.+++.+.++..- ---+..+|
T Consensus 25 ~~y~~-~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 25 LPYMQ-EENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHhh-hcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 34455 55666665 447888888888888888888888774321 12366789999999977665 45578889
Q ss_pred HHHHhccCCCChHHHHHHHHHh
Q 013497 196 QKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 196 ~~m~~~~~~p~~~t~~~li~~~ 217 (442)
..|++.+.++++.-|..++.++
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHH
Confidence 9999988999999999999887
No 262
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=67.42 E-value=13 Score=22.81 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666666666666666654
No 263
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=67.40 E-value=4.4 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred CCccHHHHHHHHhcCc-EEEecC
Q 013497 397 SNDDWYWLYAAVKLRC-LLVTND 418 (442)
Q Consensus 397 ~~DD~~~l~aa~~~~~-~~vsnD 418 (442)
-.||..++-+|+..++ +|||+|
T Consensus 86 D~~D~~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 86 DKKDNKFLNTAYASKANALITGD 108 (114)
T ss_pred CchhHHHHHHHHhcCCCEEEECC
Confidence 4479999999999998 999999
No 264
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.39 E-value=1.6e+02 Score=30.52 Aligned_cols=109 Identities=12% Similarity=-0.064 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~l 194 (442)
.+....++|-++....+..+|.-.++.|=-.|--.|++++|..-|+..... .| |...||-|=..++...+.++|..-
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHH
Confidence 344555566665534453455556666666677788888888888887653 34 567888888888888888888888
Q ss_pred HHHHHhccCCCCh--HHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 195 LQKLRSTVRCVNE--ETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 195 l~~m~~~~~~p~~--~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
+++-.+. +|.- +-||.-|+.. ..|..+||...
T Consensus 487 Y~rALqL--qP~yVR~RyNlgIS~m----------NlG~ykEA~~h 520 (579)
T KOG1125|consen 487 YNRALQL--QPGYVRVRYNLGISCM----------NLGAYKEAVKH 520 (579)
T ss_pred HHHHHhc--CCCeeeeehhhhhhhh----------hhhhHHHHHHH
Confidence 8877654 4543 3455444433 12666666554
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=67.08 E-value=81 Score=26.99 Aligned_cols=93 Identities=13% Similarity=0.021 Sum_probs=58.6
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL-FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR 187 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 187 (442)
..-.+.++.+++..++..+. -+.|.......+- --+...|++++|..+|+++.+.. |....-.+|+..|.....
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 34467789999999999998 3567664433322 23568999999999999987764 444444566666655443
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 013497 188 VEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 188 ~~~a~~ll~~m~~~~~~p~ 206 (442)
-..=...-.+..+.+-.|+
T Consensus 93 D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPD 111 (160)
T ss_pred ChHHHHHHHHHHhcCCChH
Confidence 2332333345555543333
No 266
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.06 E-value=58 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.079 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHh--hCCCCCCcccHHHHHHHHHHcCCHHHHH
Q 013497 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNN--EFNVVPRLRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 82 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~~g~~p~~~ty~~li~~~~~~g~~~~A~ 157 (442)
=+.|.+.|-.+...+..-+....-+|..-|. ..+.++|..++-...+ ..+-.+|...+.+|.+.|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4668999999888877766666666666666 5688889888887652 2233677888999999999999999886
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=66.68 E-value=22 Score=22.62 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
+..+-..|...|++++|.++|+...+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 268
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.65 E-value=11 Score=23.15 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666666777777777777666654
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=66.14 E-value=64 Score=32.87 Aligned_cols=76 Identities=9% Similarity=-0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-HHHHHHHHHh
Q 013497 142 PALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 217 (442)
Q Consensus 142 ~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~li~~~ 217 (442)
.|-.++-+.|+.++|.+.+++|.+. ...-.......||.++...+.+.++..++.+-.+.....+. ..|+..+--+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3555666889999999999999754 22223446778999999999999999999987543332332 3555544443
No 270
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=65.74 E-value=1.1e+02 Score=29.12 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcC
Q 013497 18 TNPNPETNFLINLQ-SCTKSKD-LTTAISLYESAH-SQNLRLSLHHFNALLYLCSDSA 72 (442)
Q Consensus 18 ~~~~p~~~~~~li~-~~~k~g~-~~~A~~lf~~m~-~~g~~p~~~ty~~ll~~~~~~~ 72 (442)
.|..|...++.|.+ .+.+.|- ..=|.++|.+-. +.+ .|.+++...+++
T Consensus 160 nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~-------i~~lis~Lrkg~ 210 (412)
T KOG2297|consen 160 NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD-------INDLISSLRKGK 210 (412)
T ss_pred CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc-------HHHHHHHHHhcC
Confidence 36777777777664 3444443 345667787744 333 355666666555
No 271
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.69 E-value=6.6 Score=32.34 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
.-+.|.-..|..+|+.|.+.|-+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445677788999999999999997 468887754
No 272
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=65.34 E-value=1.4e+02 Score=29.08 Aligned_cols=129 Identities=12% Similarity=0.076 Sum_probs=86.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC----CCCCH--------HHHHHH--HHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 32 SCTKSKDLTTAISLYESAHSQN----LRLSL--------HHFNAL--LYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g----~~p~~--------~ty~~l--l~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
.+.|.|.+++|..=|+...+.. ....+ ..++.. |..+..+| ....|++....+.+-.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G--------D~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG--------DCQNAIEMITHLLEIQ- 185 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC--------chhhHHHHHHHHHhcC-
Confidence 4678999999999999877543 11111 122211 12222233 6777888888887653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
+.|...|-.-..+|...|.+..|+.=++... +.. .-+..++--+-..+...|+.+.++...++.... .||..
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as-kLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQAS-KLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 4688888899999999999999987666655 321 234455555566677899999999888887653 46543
No 273
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=64.77 E-value=1e+02 Score=27.32 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL-RL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~-~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
.|..-.. +.+.|++.+|.+.|+++...-- .| -....-.+..++-+.+ ++++|...|+.+.+.-..-...
T Consensus 8 lY~~a~~-~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--------~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 8 LYQKALE-ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--------DYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHH-HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-TTH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCcch
Confidence 4555444 4457899999999999885421 11 1122223344666666 8999999999987755443344
Q ss_pred HHHHHHHHHHhcCC-------------HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 103 SVTSVARLAASKND-------------GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 103 ty~~li~~~~~~g~-------------~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
-+...+.+.+.... ..+|...|++ +|.-|=...-..+|......+.+.
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~~~--- 139 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELRNR--- 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHHHH---
T ss_pred hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHHHH---
Confidence 45555555543222 2234444444 444444444444444433333221
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 170 LEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 170 p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.-... -.+.+.|.+.|.+..|..-++.+.++
T Consensus 140 la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 140 LAEHE-LYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 00111 12445566677776676666666655
No 274
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=63.99 E-value=19 Score=34.01 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.1
Q ss_pred cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 17 KTNPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHF 61 (442)
Q Consensus 17 ~~~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty 61 (442)
.....||. -||..|....+.||+++|+.+++|.++.|+.--..+|
T Consensus 249 ~~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 249 SEPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CCccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44555776 7899999999999999999999999999985444444
No 275
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.29 E-value=17 Score=23.66 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=10.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 013497 144 LFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 144 i~~~~~~g~~~~A~~l~~~M~~ 165 (442)
-.+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 276
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=63.23 E-value=31 Score=25.60 Aligned_cols=10 Identities=20% Similarity=0.116 Sum_probs=4.1
Q ss_pred HHHHHhcCCH
Q 013497 108 ARLAASKNDG 117 (442)
Q Consensus 108 i~~~~~~g~~ 117 (442)
+...+..|+.
T Consensus 30 l~~A~~~~~~ 39 (89)
T PF12796_consen 30 LHYAAENGNL 39 (89)
T ss_dssp HHHHHHTTTH
T ss_pred HHHHHHcCCH
Confidence 3333444443
No 277
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=63.19 E-value=1.7e+02 Score=29.29 Aligned_cols=45 Identities=7% Similarity=-0.162 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKR 126 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~ 126 (442)
++++|.=-|+.....- +-+.-+|--|+.+|...|++.+|.-+-.+
T Consensus 349 R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5556555555443221 12455666666666666666665554443
No 278
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.96 E-value=6.9 Score=32.22 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=28.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCS 69 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~ 69 (442)
-+.|.-..|..+|.+|.+.|-.||. |+.||..+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a~ 139 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEAK 139 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHhc
Confidence 4457778899999999999999985 899987653
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=62.47 E-value=75 Score=24.99 Aligned_cols=71 Identities=11% Similarity=0.061 Sum_probs=43.6
Q ss_pred HHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 146 CFCENLEAE--KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 146 ~~~~~g~~~--~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.|....+.| +..+-++.+....+.|+.....+.+++|.+..++..|.++|+-.+.+.- +....|..++.-.
T Consensus 17 ~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 17 KYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQEL 89 (108)
T ss_dssp HHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHHHH
T ss_pred HHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHHHH
Confidence 344434333 3445556666678888988889999999889999999998888776643 2233676666555
No 280
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.82 E-value=63 Score=33.02 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHH
Q 013497 79 DSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 79 ~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~ 157 (442)
.|+++.|..+|-+-..... +|-+.|+.=..+|++.|++++|++=-.+-. .+.|++ .-|+-.=.++.-.|++++|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 3489999999998776654 489999999999999999999988665544 567887 57888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
.-|.+=.+.. +.+...++.|.+++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9998876653 22455566666665
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.66 E-value=1.1e+02 Score=26.72 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 58 LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
...|..-|++-..++ .++|+.-|.++.+.|..- -+..---+-...+..|+...|...|++.- .-.-.|-
T Consensus 59 gd~flaAL~lA~~~k---------~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia-~dt~~P~ 128 (221)
T COG4649 59 GDAFLAALKLAQENK---------TDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA-ADTSIPQ 128 (221)
T ss_pred hHHHHHHHHHHHcCC---------chHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh-ccCCCcc
Confidence 356666666655553 777777777777766541 11222223345677788888888888876 3333333
Q ss_pred cc-cHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 137 LR-TYDPALFC--FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 137 ~~-ty~~li~~--~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.. -..-|=.+ +..+|-++......+-+...+-..-...=.+|--+--+.|++.+|.++|..+...-..|...
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 32 22223223 34577777777776666554444334444455555557888888888888887765555443
No 282
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.73 E-value=20 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~ 203 (442)
|-.+|...|+.+.|.+++++....+-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 44566666666666666666665443
No 283
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=60.19 E-value=99 Score=25.66 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH---HHHhc
Q 013497 110 LAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLEQQEIAALLK---VSAET 185 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~li~---~~~~~ 185 (442)
+++..|+++.|++.|.+-. .. +.-+...||.=..++--.|+.++|++=+++..+. |-. +.....+.+. .|...
T Consensus 52 alaE~g~Ld~AlE~F~qal-~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL-CL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH-Hh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 4678899999999998876 22 2336678999999999999999999888877654 433 3222233222 35567
Q ss_pred CCHHHHHHHHHHHHhcc
Q 013497 186 GRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 186 g~~~~a~~ll~~m~~~~ 202 (442)
|+.+.|..=|..-.+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888887776655443
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.00 E-value=1e+02 Score=25.68 Aligned_cols=119 Identities=10% Similarity=0.147 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC----------------CcccHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP----------------RLRTYDPAL 144 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p----------------~~~ty~~li 144 (442)
.++++.++..+.... .+..-||-+|--....-+-+-..++++.+-+-+.+.| +.......+
T Consensus 17 ~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~AL 93 (161)
T PF09205_consen 17 DVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLAL 93 (161)
T ss_dssp -HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHH
T ss_pred hHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHH
Confidence 678888888877643 2444555555444444454555555555431222222 222344555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC
Q 013497 145 FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~ 203 (442)
..+.+.|.-|.-.++..++.. +-.|+....-.+-.+|.+.|+..++.+++.+--+.|+
T Consensus 94 d~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 666666666666667766654 2345666666777788888888888877777666654
No 285
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.98 E-value=1.5e+02 Score=27.65 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMG----LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~g----~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.-|+..+..| +.|++.+|...|..-.... ..|+. +=-|-..+...|+++.|..+|..+.+
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHH
Confidence 3566666544 5566666666666665441 22222 22355556666666666666665544
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.52 E-value=75 Score=28.31 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCH
Q 013497 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQEIAALLKVSAETGRV 188 (442)
Q Consensus 112 ~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~ty~~li~~~~~~g~~ 188 (442)
.+.|+ ++|.+.|-.+. ..+..-+...- ..+..|--..+.++|..++.+..+. +-.+|...+.+|...+-+.|+.
T Consensus 118 sr~~d-~~A~~~fL~~E-~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLE-GTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHc-CCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 44444 45666666666 44433232333 3333343456677777776666543 3356667777777777777777
Q ss_pred HHHH
Q 013497 189 EKVY 192 (442)
Q Consensus 189 ~~a~ 192 (442)
+.|+
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 6664
No 287
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.13 E-value=97 Score=29.15 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHh-hCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNN-EFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
...=|.+++..++|.+++...-+--. -..+.|. .....|--|.|.|+...+.++-..-....-.-+...|.++++-|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 34557899999999998887644321 1234443 45667778999999999999887776542222344588877776
Q ss_pred Hh-----cCCHHHHHHHH
Q 013497 183 AE-----TGRVEKVYQYL 195 (442)
Q Consensus 183 ~~-----~g~~~~a~~ll 195 (442)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 65 89999998877
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=55.91 E-value=2.1e+02 Score=30.68 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcC--CCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNL----RLSLHHFNALLYLCSDSA--TDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~----~p~~~ty~~ll~~~~~~~--~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
.+-|.+|- |.+++|.++|-+|-++.+ +...--|-.++.++..++ .+...++..+...-+.|-+|.
T Consensus 740 ~aei~~~~--g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~------- 810 (1189)
T KOG2041|consen 740 RAEISAFY--GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMM------- 810 (1189)
T ss_pred hHhHhhhh--cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHH-------
Confidence 34455554 789999999988865543 334445666666666654 222222222333333444442
Q ss_pred HHHHHHHHHHHHhcCCHHH
Q 013497 101 EASVTSVARLAASKNDGDY 119 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~ 119 (442)
.|......|.++|+.+.
T Consensus 811 --~We~A~~yY~~~~~~e~ 827 (1189)
T KOG2041|consen 811 --EWEEAAKYYSYCGDTEN 827 (1189)
T ss_pred --HHHHHHHHHHhccchHh
Confidence 35666666666666543
No 289
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.07 E-value=62 Score=32.16 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=6.0
Q ss_pred HHHHHHhcCCHH
Q 013497 29 NLQSCTKSKDLT 40 (442)
Q Consensus 29 li~~~~k~g~~~ 40 (442)
.|...++.|+.+
T Consensus 38 pL~~A~~~~~~~ 49 (413)
T PHA02875 38 PIKLAMKFRDSE 49 (413)
T ss_pred HHHHHHHcCCHH
Confidence 344445555554
No 290
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.83 E-value=69 Score=31.85 Aligned_cols=144 Identities=11% Similarity=0.025 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH--HHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHH--FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA--SVT 105 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~t--y~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~--ty~ 105 (442)
|...++.|+.+-+..++ +.|..|+... ..+.|..+...+ . .++.+.+.+.|..|+.. ...
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~--------~----~~~v~~Ll~~ga~~~~~~~~~~ 69 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFR--------D----SEAIKLLMKHGAIPDVKYPDIE 69 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcC--------C----HHHHHHHHhCCCCccccCCCcc
Confidence 44456677776654444 5676665432 233444333444 2 45666667777766543 123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI--AALLKVSA 183 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty--~~li~~~~ 183 (442)
+.+...++.|+.+.+..+++.-. ...-..+..-. +.+...+..|+.+ +.+.+.+.|..|+.... .+.+...+
T Consensus 70 t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~ 143 (413)
T PHA02875 70 SELHDAVEEGDVKAVEELLDLGK-FADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAV 143 (413)
T ss_pred cHHHHHHHCCCHHHHHHHHHcCC-cccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence 45666678888887776665432 11111111222 3444555677764 44555566666543211 23344445
Q ss_pred hcCCHHHHHHHH
Q 013497 184 ETGRVEKVYQYL 195 (442)
Q Consensus 184 ~~g~~~~a~~ll 195 (442)
..|+.+-+..++
T Consensus 144 ~~~~~~~v~~Ll 155 (413)
T PHA02875 144 MMGDIKGIELLI 155 (413)
T ss_pred HcCCHHHHHHHH
Confidence 677765544433
No 291
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.42 E-value=45 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
.|+..+|..++..+...|+.++|.+++.++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.30 E-value=22 Score=19.78 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIK 125 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~ 125 (442)
..+-..+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555666666666666554
No 293
>PF13470 PIN_3: PIN domain
Probab=53.35 E-value=12 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.8
Q ss_pred CCccHHHHHHHHhcCc-EEEecCc
Q 013497 397 SNDDWYWLYAAVKLRC-LLVTNDE 419 (442)
Q Consensus 397 ~~DD~~~l~aa~~~~~-~~vsnD~ 419 (442)
--||..++.+|+..++ +|||+|.
T Consensus 95 D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 95 DPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CccHHHHHHHHHHcCCCEEEeCCC
Confidence 4589999999999965 9999995
No 294
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.69 E-value=2.2e+02 Score=27.01 Aligned_cols=110 Identities=10% Similarity=0.019 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHH
Q 013497 81 ALRHGFRVFDQMLSNNV----IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKA 156 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~----~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A 156 (442)
-.+.|.+.|+.....+. ..+.-.-.+++...++.|..++-..+++..+ . .++...-..++.+++...+.+..
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~-~---~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK-N---STSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH-T---TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh-c---cCCHHHHHHHHHhhhccCCHHHH
Confidence 46778888888776422 3455566677777777777666555555555 2 23566677888888888888887
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCH--HHHHHHHH
Q 013497 157 YEVEEHMGLMG-LSLEQQEIAALLKVSAETGRV--EKVYQYLQ 196 (442)
Q Consensus 157 ~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~--~~a~~ll~ 196 (442)
.++++.....+ +.+.. . ..++.++...+.. +.+.+.+.
T Consensus 221 ~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHH
Confidence 78888777754 44333 3 3344444323322 44544443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=51.42 E-value=30 Score=20.26 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+|..+-..|...|++++|+..|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45555556666666666666666554
No 296
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=51.41 E-value=3.1e+02 Score=29.49 Aligned_cols=12 Identities=0% Similarity=0.146 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHH
Q 013497 81 ALRHGFRVFDQM 92 (442)
Q Consensus 81 ~~~~a~~l~~~M 92 (442)
++++|+++|-+|
T Consensus 749 ~feeaek~yld~ 760 (1189)
T KOG2041|consen 749 EFEEAEKLYLDA 760 (1189)
T ss_pred chhHhhhhhhcc
Confidence 445555555444
No 297
>KOG3165 consensus Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=51.02 E-value=56 Score=27.73 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=25.4
Q ss_pred eEEeCCCCCCccHHHHHHHHhcCcEEE-ecCc
Q 013497 389 VLYMTPHGSNDDWYWLYAAVKLRCLLV-TNDE 419 (442)
Q Consensus 389 ~~~~~~~~~~DD~~~l~aa~~~~~~~v-snD~ 419 (442)
.|-++.-|.|.|-++.---....|+|| |||.
T Consensus 128 RL~C~HKGTYADDClv~RV~qHkCYIVAT~D~ 159 (195)
T KOG3165|consen 128 RLPCTHKGTYADDCLVQRVTQHKCYIVATNDR 159 (195)
T ss_pred ccccccCCcchhhHHHHHHhhcceEEEEeccH
Confidence 456778889999999999888999776 7773
No 298
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.95 E-value=69 Score=28.12 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
..+.......+.+......+...+.....|+..+|..++..+...|+.++|..+..++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4344444666766666666665533456899999999999999999999999999988753
No 299
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=50.79 E-value=38 Score=25.09 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=46.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---HHHHH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SVTSV 107 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---ty~~l 107 (442)
...++.|+++-...+++ .+..++. -.+.|..++..+. .++++.+.+.|..|+.. -+|.|
T Consensus 2 ~~A~~~~~~~~~~~ll~----~~~~~~~-~~~~l~~A~~~~~-------------~~~~~~Ll~~g~~~~~~~~~g~t~L 63 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLE----KGADINL-GNTALHYAAENGN-------------LEIVKLLLENGADINSQDKNGNTAL 63 (89)
T ss_dssp HHHHHTTTHHHHHHHHH----TTSTTTS-SSBHHHHHHHTTT-------------HHHHHHHHHTTTCTT-BSTTSSBHH
T ss_pred HHHHHcCCHHHHHHHHH----CcCCCCC-CCCHHHHHHHcCC-------------HHHHHHHHHhcccccccCCCCCCHH
Confidence 34567777766555554 4444443 2234444665554 67777788888887664 34444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhCCCCCCc
Q 013497 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 137 (442)
.. .+..|+.+ +++-+. +.|..|+.
T Consensus 64 ~~-A~~~~~~~----~~~~Ll-~~g~~~~~ 87 (89)
T PF12796_consen 64 HY-AAENGNLE----IVKLLL-EHGADVNI 87 (89)
T ss_dssp HH-HHHTTHHH----HHHHHH-HTTT-TTS
T ss_pred HH-HHHcCCHH----HHHHHH-HcCCCCCC
Confidence 44 45566644 444555 55666664
No 300
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=49.57 E-value=1.6e+02 Score=24.73 Aligned_cols=81 Identities=9% Similarity=0.049 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN--LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g--~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
.|+.-...+ +.|++++|.+.|+.+...= -+-....---|+.++-..+ ++++|...++...+.....--+
T Consensus 13 ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--------~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 13 LYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--------DYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCCCc
Confidence 555544443 3566777777777666431 0111222233344555555 6777777777666655443335
Q ss_pred HHHHHHHHHHhc
Q 013497 103 SVTSVARLAASK 114 (442)
Q Consensus 103 ty~~li~~~~~~ 114 (442)
-|.-.+.|++.-
T Consensus 84 dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 84 DYAYYMRGLSYY 95 (142)
T ss_pred cHHHHHHHHHHH
Confidence 555555555543
No 301
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=49.32 E-value=2.8e+02 Score=27.60 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc--cHHHHHHHHHH---cCCHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR--TYDPALFCFCE---NLEAEK 155 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--ty~~li~~~~~---~g~~~~ 155 (442)
..+.|.+.-+.--..-.. =...+.+.+...|..|+|+.|+++++.-++..-+.++.. .-..|+.+-.. .-+...
T Consensus 169 areaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 444455544443322111 235667888888888888888888887663344455542 22333332211 112223
Q ss_pred HHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 013497 156 AYEVEEHMGLMGLSLEQQEIA-ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~-~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~ 215 (442)
|... ......+.||.+--. .--.++.+.|+..++-.+++.+=+. .|.+..+...+.
T Consensus 248 Ar~~--A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~~ 304 (531)
T COG3898 248 ARDD--ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYVR 304 (531)
T ss_pred HHHH--HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHHH
Confidence 3322 222234455544322 2235678899999999999888665 566665544443
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=48.75 E-value=1.9e+02 Score=32.80 Aligned_cols=78 Identities=9% Similarity=-0.064 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
--+.+|-.+|+|++|+.+..+|. .. -+. .+--.|+.-+...++.-+|-++..+-... +.--+..||
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql~-~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ 1037 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQLS-EG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLC 1037 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhhc-CC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHh
Confidence 34556666777777777776665 21 111 12245666666677776766666555432 123334445
Q ss_pred hcCCHHHHHHHH
Q 013497 184 ETGRVEKVYQYL 195 (442)
Q Consensus 184 ~~g~~~~a~~ll 195 (442)
++..+++|.++-
T Consensus 1038 ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1038 KAKEWEEALRVA 1049 (1265)
T ss_pred hHhHHHHHHHHH
Confidence 555555555443
No 303
>PRK11906 transcriptional regulator; Provisional
Probab=47.82 E-value=3e+02 Score=27.89 Aligned_cols=113 Identities=9% Similarity=0.021 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 013497 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKN 115 (442)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g 115 (442)
.+..+|.++-++..+.+- -|+..-..+=.+....+ +++.|..+|++-...+.. ++...|..++ +.-+|
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G 386 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG--------QAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNE 386 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcC
Confidence 345566666666665542 24443333323334444 689999999988764422 2234444444 45579
Q ss_pred CHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
+.++|.+.++.-. .+.|.. ..--..|..|+.++ ++.|..++..-.
T Consensus 387 ~~~~a~~~i~~al---rLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 387 KIEEARICIDKSL---QLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred CHHHHHHHHHHHh---ccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 9999999999854 245644 33344455777665 788888876543
No 304
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.61 E-value=2.6e+02 Score=26.77 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 013497 283 ETERFAQSVAALAMEREVK 301 (442)
Q Consensus 283 d~~~~~~~I~~~~~~g~~~ 301 (442)
...+|.-++.++|..|+.+
T Consensus 320 hlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred HHHhhhHHHHHHhcCChHH
Confidence 5666777888888877654
No 305
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=47.58 E-value=1.7e+02 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=21.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 148 CENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 148 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
...++.+.|...+..............+..+-..+...+..+.+...+....
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 229 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKAL 229 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 3444455555444444432111123334444444444444444444444443
No 306
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.54 E-value=3.5e+02 Score=27.84 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=64.1
Q ss_pred HHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 86 FRVFDQ-MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 86 ~~l~~~-M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
.+.+.. +...|+..+......++. ...|++..|+.++++.. ..+ ....|+..+...+
T Consensus 186 ~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i-~~~--~~~it~~~V~~~l----------------- 243 (484)
T PRK14956 186 QDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI-VFT--DSKLTGVKIRKMI----------------- 243 (484)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH-HhC--CCCcCHHHHHHHh-----------------
Confidence 333433 344677777777665554 35688999999998865 321 2235555553332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHH
Q 013497 165 LMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEET 209 (442)
Q Consensus 165 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t 209 (442)
|+. +...+..+++.....+....|+.++.+|.+.|..|....
T Consensus 244 --g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 244 --GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred --CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 332 566677788877666666789999999999988776554
No 307
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.04 E-value=40 Score=31.96 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
|+..|....+.||+++|+.|++|.+..|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555555555555555555555544
No 308
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.96 E-value=1.3e+02 Score=22.79 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
.|..-+..-.... .+++ ++|+-....|+..|...|-.++.+..-+- .++...+++..|...
T Consensus 12 ~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nV--------sP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 12 VYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNV--------SPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCC--------CHHHHHHHHHHHHcc
Confidence 6666655443332 3333 89999999999999999999999877766 788889999988653
No 309
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=2.8e+02 Score=26.84 Aligned_cols=94 Identities=9% Similarity=0.003 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESA----HSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m----~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.+-..-.-||+-||.+.|++.+.+. ..-|.+.|++-+-.=|. .|.... -+.+-.+.-+.|.+.|...
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~--------lV~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHD--------LVTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHH--------HHHHHHHHHHHHHHhCCCh
Confidence 5556667788888888888877664 35577788777766666 333333 4455555555666666654
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 100 N----EASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 100 ~----~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+ --+|-.+-..-.+ ++.+|-.+|-+..
T Consensus 178 eRrNRlKvY~Gly~msvR--~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 178 ERRNRLKVYQGLYCMSVR--NFKEAADLFLDSV 208 (393)
T ss_pred hhhhhHHHHHHHHHHHHH--hHHHHHHHHHHHc
Confidence 3 2355555444333 6777777776654
No 310
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.48 E-value=2.6e+02 Score=29.42 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
+++.|.++-.+. -++.-|..|-++..+.|++..|.+-|..-+ -|..|+-.+...|+.+....+=
T Consensus 652 rl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 652 RLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred cHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHHHH
Confidence 777787777655 367789999999999999999998887655 2677888888889887766666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
..-.+.|.- |.-.-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 666665542 4444466778999888877643
No 311
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.59 E-value=3.1e+02 Score=26.72 Aligned_cols=90 Identities=12% Similarity=-0.109 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQEIAALLKVS 182 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~ty~~li~~~ 182 (442)
.+.-++..+|-+++|++.-++-. +-+ .-|.-.-.++-+.+--.|+++++.+...+-... +-..-..-|--..-.+
T Consensus 180 myaFgL~E~g~y~dAEk~A~ral-qiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRAL-QIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhc-cCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 33445556777777776665544 211 123334445555555667777776654432211 0000011121222234
Q ss_pred HhcCCHHHHHHHHHH
Q 013497 183 AETGRVEKVYQYLQK 197 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~ 197 (442)
...+.++.|.++|+.
T Consensus 258 iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDR 272 (491)
T ss_pred hcccchhHHHHHHHH
Confidence 456778888888854
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=44.32 E-value=4.2e+02 Score=28.20 Aligned_cols=44 Identities=11% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD 70 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~ 70 (442)
.| ++|--|.++|++++|.++..+..+ ........|-..+..+..
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTT
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHh
Confidence 44 466778899999999999955442 233344556666665544
No 313
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.05 E-value=2.9e+02 Score=26.27 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++.+|..+|.......-. +...--.++.+|...|+.+.|..++..+. ..--......-..=|..+.+.....+...+-
T Consensus 149 ~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP-~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 149 DFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP-LQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred chhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc-ccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 566677777766554322 23344567777778888888888887776 2211111122222334444444444444444
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCCCChHHHHHHHHHh
Q 013497 161 EHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRST-VRCVNEETGKIIEDWF 217 (442)
Q Consensus 161 ~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~-~~~p~~~t~~~li~~~ 217 (442)
...-. .| |...=-.|-..+...|+.+.|.+.|-.+... .-.-+...-..|++.|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f 282 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELF 282 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHH
Confidence 44433 24 4444445666777788888887776655443 2233344445555555
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=43.53 E-value=34 Score=20.57 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAF 121 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~ 121 (442)
|..+|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4566666666666666666654
No 315
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=43.08 E-value=7.9 Score=27.31 Aligned_cols=35 Identities=29% Similarity=0.655 Sum_probs=23.5
Q ss_pred HHHHHHhcCcEEEecCccccchhhccccchhhhhhhhcC
Q 013497 403 WLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQ 441 (442)
Q Consensus 403 ~l~aa~~~~~~~vsnD~~rdh~~~~~~~~~f~~W~~~hq 441 (442)
|.-+|-..+++-+|-|+-|.|++-+ .+.-||.+||
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q 54 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQ 54 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH-
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHC
Confidence 4456666788999999999999854 5889999998
No 316
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=2.9e+02 Score=27.39 Aligned_cols=105 Identities=10% Similarity=-0.069 Sum_probs=71.4
Q ss_pred HHHhcCCHHHHHHHHHHhHhh----CCC---------CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 110 LAASKNDGDYAFVLIKRMNNE----FNV---------VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~----~g~---------~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
.|.+.|++..|..-|+...+- .+. ..-+.+++.|..+|.+.+++.+|++..+...+.+- +|+-..-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 467778877777776653310 111 23346788999999999999999999888876542 2333222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
-=-.+|...|+++.|...|+++.+. .|+....+.=+..+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 2234677899999999999999865 67766554444444
No 317
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=40.98 E-value=3.6e+02 Score=26.41 Aligned_cols=163 Identities=12% Similarity=0.030 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.....+..+.-.||...|++....+.+-- +-|+..|..--.+|...+ .+..|+.=+....+.. .-|+-++
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~--------e~k~AI~Dlk~askLs-~DnTe~~ 226 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEG--------EPKKAIHDLKQASKLS-QDNTEGH 226 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcc-ccchHHH
Confidence 44556677777899999999988887642 234444444444666555 6777765544443322 2355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHH-------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPA-------------LFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~l-------------i~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
--+-..+...|+.+.++..+++.. .+.||...+-+. +......+++-++.+-.+...+..-...
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 566677888899999999888877 456776432211 1123345666666666666555433322
Q ss_pred HHH---HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 172 QQE---IAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 172 ~~t---y~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.++ +..+-.++...|.+.+|.+...+..+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 333 33455667778888888888777654
No 318
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.63 E-value=1.5e+02 Score=31.90 Aligned_cols=92 Identities=10% Similarity=0.074 Sum_probs=73.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 96 NVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 96 g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
|....-.|.+--+.-+..-|+-..|.++-.+.+ .||-+.|-.=+.+++..+++++-+++-..+.. ..-|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy 747 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY 747 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc
Confidence 334444556666777788899999999988887 78999999999999999999988777666542 3446
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 013497 176 AALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 176 ~~li~~~~~~g~~~~a~~ll~~m 198 (442)
.-+..+|.+.|+.++|.+++-+.
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhcc
Confidence 67888999999999999988655
No 319
>PRK15331 chaperone protein SicA; Provisional
Probab=39.31 E-value=2.5e+02 Score=24.17 Aligned_cols=82 Identities=16% Similarity=-0.022 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|..+|.-+...++- |.--|..|-.++-..+++++|...|...- ... .-|.+.+=.+=.+|...|+.+.|..-|
T Consensus 52 k~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~-~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLL-KNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-cCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 799999999998775543 44446677777778899999999998765 333 235555666678899999999999999
Q ss_pred HHHHH
Q 013497 161 EHMGL 165 (442)
Q Consensus 161 ~~M~~ 165 (442)
+...+
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 88776
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=39.31 E-value=65 Score=23.96 Aligned_cols=46 Identities=9% Similarity=0.018 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHH
Q 013497 113 SKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ 158 (442)
...+-++|+..+....++..-.|+ -++...|+.+|+..|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666665511111111 1456666666766666666554
No 321
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=38.51 E-value=72 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 54 LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 54 ~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
+.|+...++-|+.+++... .+++++..+++...+|. .+.-+|---++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~--------AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDH--------AIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3466677888888777776 78889999998888886 4667777777777764
No 322
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.66 E-value=1.8e+02 Score=22.75 Aligned_cols=63 Identities=19% Similarity=0.007 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENL--EAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~g~~p 170 (442)
..+|..|...|+.++|..-+.++. ..... ......+|..+...+ .-+.+..++..+...+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~-~~~~~--~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK-LPSQH--HEVVKVILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT--GGGH--HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC-CCccH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 456777888899999999998876 22111 122333333333332 2233455666666665543
No 323
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.61 E-value=2e+02 Score=30.58 Aligned_cols=79 Identities=10% Similarity=0.096 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHS--QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~--~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+|+.+|...|++-.+.++++.... .|-+.=...||..|+-..+.+ ++--....+.|.+++++-. +.-|..||
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~--sf~l~~~~~~~~~~lq~a~---ln~d~~t~ 106 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRG--SFELTDVLSNAKELLQQAR---LNGDSLTY 106 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHhh---cCCcchHH
Confidence 4899999999999999999999764 344444567888888666665 3333334556667666655 34477788
Q ss_pred HHHHHH
Q 013497 105 TSVARL 110 (442)
Q Consensus 105 ~~li~~ 110 (442)
..|+.+
T Consensus 107 all~~~ 112 (1117)
T COG5108 107 ALLCQA 112 (1117)
T ss_pred HHHHHh
Confidence 777655
No 324
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.42 E-value=1.6e+02 Score=27.99 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++.+-....++..... .+.--+--++..| +.+-+.++.-.+.+=+++.=-..=..+++..-..|..+|.+.+|.++.
T Consensus 226 Dv~e~es~~rqi~~in--ltide~kelv~~y-kgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 226 DVQEYESLARQIEAIN--LTIDELKELVGQY-KGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred cHHHHHHHhhhhhccc--cCHHHHHHHHHHh-cCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4555555555554433 4445556666555 222222222222211100000001234666677888999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hccCCCChHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR-----STVRCVNEETG 210 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~-----~~~~~p~~~t~ 210 (442)
+....-. +.++..|-.|+..+...|+--.|.+-+.+|. +.|+..+.+.+
T Consensus 303 qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 303 QRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 8776543 3467778899999999998666666555553 35676665444
No 325
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=36.98 E-value=4.4e+02 Score=26.30 Aligned_cols=181 Identities=11% Similarity=0.079 Sum_probs=98.0
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 19 NPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLH--HFNALLYLCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 19 ~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g-~~p~~~--ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
+..|.. .+.+.+...|..|+++.|+++.+.-++.. +.+++. .=..||.+-....+++ +...|.+.-.+-
T Consensus 182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-----dp~~Ar~~A~~a- 255 (531)
T COG3898 182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-----DPASARDDALEA- 255 (531)
T ss_pred hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHH-
Confidence 344555 78889999999999999999999876543 455542 3445555332222221 223333332222
Q ss_pred hCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC
Q 013497 94 SNNVIPNEASVT-SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL-MGLSLE 171 (442)
Q Consensus 94 ~~g~~p~~~ty~-~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-~g~~p~ 171 (442)
....||.+.-. .-.++|.+.|+..++-.+++.+= +..=.|++ + .+..+.+.|+.-. .=++.... ..++||
T Consensus 256 -~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW-K~ePHP~i--a--~lY~~ar~gdta~--dRlkRa~~L~slk~n 327 (531)
T COG3898 256 -NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW-KAEPHPDI--A--LLYVRARSGDTAL--DRLKRAKKLESLKPN 327 (531)
T ss_pred -hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH-hcCCChHH--H--HHHHHhcCCCcHH--HHHHHHHHHHhcCcc
Confidence 23455544322 23467889999999999999887 54333432 2 2333445665322 21121111 123333
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 013497 172 -QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (442)
Q Consensus 172 -~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~ 215 (442)
..+--++.++-...|++..|..--+.... ..|..+.|-.|-+
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAd 370 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLAD 370 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHH
Confidence 34445556666677777666544333322 2455655554433
No 326
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.92 E-value=48 Score=23.22 Aligned_cols=46 Identities=13% Similarity=-0.029 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.++...++++.++.. .-|-.---.+|.+|...|++++|.+.++++.
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555331 2344444578999999999999999998886
No 327
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.87 E-value=3.4e+02 Score=25.05 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=51.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC-----------CCCcccHHHHHHHHHHcCCHHH
Q 013497 87 RVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-----------VPRLRTYDPALFCFCENLEAEK 155 (442)
Q Consensus 87 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----------~p~~~ty~~li~~~~~~g~~~~ 155 (442)
++.+-.+..++.-+.-...++| +...|++..|+.-++.-.+..|+ .|.......++..| ..+++++
T Consensus 180 Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~ 256 (333)
T KOG0991|consen 180 RLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDE 256 (333)
T ss_pred HHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHH
Confidence 3344444444443333333333 34567777777777665423332 24445555556544 4566778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 156 AYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
|.+++.++-+.|..|... .+++.+.+
T Consensus 257 A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 257 ALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 888887777777776544 35566654
No 328
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.77 E-value=55 Score=22.95 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.++...++++.++ .. .-|-..-=.+|.+|...|++++|.+..+++..
T Consensus 5 ~~~~~~~~~~~lR-~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLR-AQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566666665 21 22445555789999999999999998888764
No 329
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.41 E-value=2.1e+02 Score=30.38 Aligned_cols=91 Identities=15% Similarity=0.012 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhC--CCCCCcccHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCCCHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEF--NVVPRLRTYDPALFCFCENLEAE------KAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~--g~~p~~~ty~~li~~~~~~g~~~------~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
+|+.+|..+|++..+.++++... .. |-+.=+..||..|+.+.+.|.++ .|.++++.- -+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~-~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI-DHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-cCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHH
Confidence 89999999999999999999887 32 22223456888899999999754 333443333 35568899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
|+.+..+.-.-....-+++++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 99887775555555556666554
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.29 E-value=6.1e+02 Score=27.89 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++..--.+++.+.+.|+. +.---+.||.+|.+.++.+.-.++.+... . |.. .+-....+..+-+.+-.++|..+=
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 555556666777777765 34444678888888888777666665433 1 211 223455666666666666665553
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
..-.. .+.....++. ..+++++|.+.+..|
T Consensus 487 ~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 33221 3333444443 356777777776654
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=35.99 E-value=2.7e+02 Score=23.59 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=41.0
Q ss_pred HhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 112 ASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 112 ~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
...++++++..+++.|. -+.|+. .+|-..| +...|++++|..+|++..+.+.
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC
Confidence 34889999999999998 356765 4454444 5689999999999999988753
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.91 E-value=1.4e+02 Score=28.92 Aligned_cols=47 Identities=11% Similarity=-0.094 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 111 AASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 111 ~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
|.+.|.+++|...+..-. .+.| |.++|..-..+|.+...+..|+.=.
T Consensus 107 yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred hhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhH
Confidence 556666666666665544 2345 6666666666666666555554433
No 333
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=35.44 E-value=3.1e+02 Score=24.14 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 81 ALRHGFRVFDQMLSNNVI--PNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
++++|.+.|+.+...... --....-.+..++-+.|+.++|...+++..
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 688888888887764322 112334456677777888888888888776
No 334
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.41 E-value=3e+02 Score=24.96 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccH---HHHHHHHHHcCCHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY---DPALFCFCENLEAEKAY 157 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty---~~li~~~~~~g~~~~A~ 157 (442)
++++|.+.+-+ -.+.|+-.. -+|.++...|+.+.|+.++..+. |...+. +.++.. ..++.+.+|+
T Consensus 93 ~~~~A~~~L~~---ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~------p~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 93 DFEEALELLSH---PSLIPWFPD--KILQALLRRGDPKLALRYLRAVG------PPLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred hHHHHHHHhCC---CCCCcccHH--HHHHHHHHCCChhHHHHHHHhcC------CCCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 56666666522 122222111 36666666777777777776654 333333 222333 5567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..-+...+.. ....+..++..+..
T Consensus 161 ~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 161 SFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHhCchhh---hHHHHHHHHHHHHH
Confidence 7666554321 12355566665554
No 335
>TIGR00028 Mtu_PIN_fam Mycobacterium tuberculosis PIN domain family. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see Pfam pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis. Two more are now found in Synechococcus sp. WH8102. The specific function is unknown but may be in signal transduction.
Probab=35.16 E-value=1.3e+02 Score=24.43 Aligned_cols=27 Identities=22% Similarity=-0.069 Sum_probs=22.7
Q ss_pred CCCCCCccHHHHHHHHhcCcEEEecCc
Q 013497 393 TPHGSNDDWYWLYAAVKLRCLLVTNDE 419 (442)
Q Consensus 393 ~~~~~~DD~~~l~aa~~~~~~~vsnD~ 419 (442)
+...+.+|.+++-.|...++.+||+|.
T Consensus 100 ~~~~~~~D~~i~a~A~~~~~~lvT~D~ 126 (142)
T TIGR00028 100 AGGRLVTDAHLAALAREHGAELVTFDR 126 (142)
T ss_pred cCCCCchHHHHHHHHHHcCCEEEecCC
Confidence 334567999999999999999999994
No 336
>PHA02874 ankyrin repeat protein; Provisional
Probab=34.21 E-value=2e+02 Score=28.78 Aligned_cols=69 Identities=7% Similarity=0.054 Sum_probs=31.6
Q ss_pred hCCCCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 013497 130 EFNVVPRLR--TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (442)
Q Consensus 130 ~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p 205 (442)
+.|..++.. .-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+..|..+ +++.+.+.|..+
T Consensus 112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~----Ll~~gad~n~~d~~g~tpLh~A~~~~~~~----iv~~Ll~~g~~~ 183 (434)
T PHA02874 112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKM----LFEYGADVNIEDDNGCYPIHIAIKHNFFD----IIKLLLEKGAYA 183 (434)
T ss_pred HCcCCCCCCCCCCccHHHHHHHCCCHHHHHH----HHhCCCCCCCcCCCCCCHHHHHHHCCcHH----HHHHHHHCCCCC
Confidence 444444432 12344555567777655443 344555443221 122334445566654 344444555444
Q ss_pred C
Q 013497 206 N 206 (442)
Q Consensus 206 ~ 206 (442)
+
T Consensus 184 n 184 (434)
T PHA02874 184 N 184 (434)
T ss_pred C
Confidence 3
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=34.06 E-value=96 Score=17.84 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS 51 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~ 51 (442)
+|..+=..|.+.|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667788999999999999998654
No 338
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=33.69 E-value=1.6e+02 Score=28.16 Aligned_cols=92 Identities=24% Similarity=0.225 Sum_probs=55.9
Q ss_pred CcceEEeccchhccccccCCCCcChhh-HHHHHHHHHHhcCCCccEEEccCccccCCCCChhhHHHHHHHHhcCe--EEe
Q 013497 316 NYEAIVDGANIGLYQQNFTEGGFSVPQ-LDAVVKKLYERSGNKWPLVILHNKRLRSLWENPSHRNLVEEWNEKGV--LYM 392 (442)
Q Consensus 316 ~~d~vIdg~Nv~~~~~~~~~~~~~~~~-~~~vv~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 392 (442)
.-.++|||--...+.-.|-+|..-..| +..=++++.+.. .+ .||.|+++ --.+++++++... +-.
T Consensus 166 DTSvIIDGRI~di~~TGFleG~iiiP~FVL~ELQ~iADss---D~-----lKR~RGRR----GLdILn~iqk~~~~~v~I 233 (356)
T COG4956 166 DTSVIIDGRIADILQTGFLEGTIIIPQFVLLELQHIADSS---DD-----LKRNRGRR----GLDILNEIQKEDPIQVEI 233 (356)
T ss_pred eeceEEcchHHHHHHhCCccceEeeeHHHHHHHHHHhhcc---ch-----hhhhcccc----hhHHHHHHHhhCCCcEEE
Confidence 346899998888877777766532222 333344444331 12 23333321 1347888888763 333
Q ss_pred CCCCCCc----cHHHHHHHHhcCcEEEecCc
Q 013497 393 TPHGSND----DWYWLYAAVKLRCLLVTNDE 419 (442)
Q Consensus 393 ~~~~~~D----D~~~l~aa~~~~~~~vsnD~ 419 (442)
-|....| |-=++..|-.-++.+||||-
T Consensus 234 ~~~Df~di~eVD~KLvklAk~~~g~lvTND~ 264 (356)
T COG4956 234 YEGDFEDIPEVDSKLVKLAKVTGGKLVTNDF 264 (356)
T ss_pred ccCCccchhhHHHHHHHHHHHhCCEEEeccC
Confidence 3333334 88899999999999999995
No 339
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.55 E-value=5.8e+02 Score=26.69 Aligned_cols=116 Identities=9% Similarity=-0.021 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC
Q 013497 56 LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (442)
Q Consensus 56 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 135 (442)
+....|+.|+.++.... .++-.++++++.. .+ ...+..++++....|-......+.+.++ ...+.+
T Consensus 308 ~~~~~f~~lv~~lR~~~---------~e~l~~l~~~~~~---~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~-~~~~~~ 373 (574)
T smart00638 308 PAAAKFLRLVRLLRTLS---------EEQLEQLWRQLYE---KK-KKARRIFLDAVAQAGTPPALKFIKQWIK-NKKITP 373 (574)
T ss_pred chHHHHHHHHHHHHhCC---------HHHHHHHHHHHHh---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCCH
Confidence 56778999999888774 8888899998864 11 6789999999999999888888888777 555543
Q ss_pred CcccHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcC
Q 013497 136 RLRTYDPALFCFC--ENLEAEKAYEVEEHMGLMGLSLEQ-------QEIAALLKVSAETG 186 (442)
Q Consensus 136 ~~~ty~~li~~~~--~~g~~~~A~~l~~~M~~~g~~p~~-------~ty~~li~~~~~~g 186 (442)
...-..+..... ..-..+-...+++-+....+.+.. .+|.+|+.-+|...
T Consensus 374 -~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 374 -LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred -HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 322333333222 233333344444444434555554 45666666555544
No 340
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.49 E-value=3.5e+02 Score=24.07 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-CCCCCCcccHHHHHH-HHHHcCCHH--HHH
Q 013497 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNE-FNVVPRLRTYDPALF-CFCENLEAE--KAY 157 (442)
Q Consensus 82 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-~g~~p~~~ty~~li~-~~~~~g~~~--~A~ 157 (442)
-+++.++-.++ +-++...-.....|++++|..-++++.+. ..++--...|.-+.. +||.++.-+ +|.
T Consensus 19 REE~l~lsRei---------~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREI---------VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 45566666655 34555555667788899888888877521 122223456777776 788777644 555
Q ss_pred HHHHHHHHCCCCCCHH----HHHHHHHHHH--------------hcCCHHHHHHHHHHHHh
Q 013497 158 EVEEHMGLMGLSLEQQ----EIAALLKVSA--------------ETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~----ty~~li~~~~--------------~~g~~~~a~~ll~~m~~ 200 (442)
-++.-+.. +..|+.. .+...|.|.+ +.|+++.|.++++-|..
T Consensus 90 ~l~~~l~~-~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 90 LLYSILKD-GRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHhc-CCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555544 3444433 2333444433 35666777766666653
No 341
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.58 E-value=3.5e+02 Score=23.80 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV--PRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ-EIAAL 178 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~--p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~l 178 (442)
-+|.+-++. ++.+..++|+.-|.++. +.|.. |-+ .---+-......|+...|...|++.-...-.|-.. -..-|
T Consensus 60 d~flaAL~l-A~~~k~d~Alaaf~~le-ktg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 60 DAFLAALKL-AQENKTDDALAAFTDLE-KTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHH-HHcCCchHHHHHHHHHH-hcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 344444443 56677888888888887 55432 322 11112233456788888888888887655445433 11222
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhc
Q 013497 179 LKV--SAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 179 i~~--~~~~g~~~~a~~ll~~m~~~ 201 (442)
=.+ +..+|.++.+....+-+-..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d 161 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGD 161 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCC
Confidence 222 34577777777666665443
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.56 E-value=6e+02 Score=26.58 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=91.6
Q ss_pred HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 013497 33 CTKSKDLTTAISLYESAHS-------QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~-------~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~ 105 (442)
++...|++.|+..|..+.+ .|. ....+-|=.+|.++...... +.+.|..+|..--+.|. |+...+-
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~~~~---d~~~A~~~~~~aA~~g~-~~a~~~l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGVEKI---DYEKALKLYTKAAELGN-PDAQYLL 331 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCCccc---cHHHHHHHHHHHHhcCC-chHHHHH
Confidence 6677889999999998866 442 22344444455554311111 56778999988777775 4555544
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 106 SVARLAAS-KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFC--ENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 106 ~li~~~~~-~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~--~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
..+..... ..+...|.++|..-- ..|..+ ..-+-.++.... -.-+.+.|...+....+.|......... .+..+
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~Aa-~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~-~~~~~ 408 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLAA-KAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLG-AFYEY 408 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHHH-HcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHH-HHHHH
Confidence 44443333 346788999998877 666432 222222111111 2235777888888877777332233222 22233
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCC
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.. +..+.+.-....+...+....
T Consensus 409 g~-~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 409 GV-GRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred cc-ccccHHHHHHHHHHHhhhhHH
Confidence 33 666666666666655554333
No 343
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.55 E-value=3.3e+02 Score=29.80 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hCC------------CCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAH----SQN------------LRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFR 87 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~----~~g------------~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~ 87 (442)
+.+.++.+|..++.+-.=.-++.... ..+ ......+..+-|. +|.+. .++.|..
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~---------ly~~Ai~ 355 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKN---------LYKVAIN 355 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhh---------hHHHHHH
Confidence 77888888888887654444444322 222 0111122223333 22222 4555665
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 88 VFDQMLSNNVIPNEASVTSVARL----AASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 88 l~~~M~~~g~~p~~~ty~~li~~----~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
+-. ..+ .|.-+...+.+. +.+.|++++|..-+-+-. . -+.| ..+|.-|..+..+..-..+++.+
T Consensus 356 LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI-~-~le~-----s~Vi~kfLdaq~IknLt~YLe~L 423 (933)
T KOG2114|consen 356 LAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI-G-FLEP-----SEVIKKFLDAQRIKNLTSYLEAL 423 (933)
T ss_pred HHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc-c-cCCh-----HHHHHHhcCHHHHHHHHHHHHHH
Confidence 543 223 334444445544 456899999998887655 2 1233 45778888888888888889999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
.+.|+.-...| +.||.+|.+.++.++..++.+.--
T Consensus 424 ~~~gla~~dht-tlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 424 HKKGLANSDHT-TLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHcccccchhH-HHHHHHHHHhcchHHHHHHHhcCC
Confidence 99998855444 889999999999988877776554
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.13 E-value=3e+02 Score=26.22 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCC
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNG 224 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~ 224 (442)
+++..-+.|..+|.+.+|.++.++.... -+.++..+..++..+ +..|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~l--a~~gD 328 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASL--ATLGD 328 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHH--HHhcc
Confidence 3455566788888888888887776543 245666777777777 55543
No 345
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.98 E-value=2.3e+02 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
++|+--...|+..|...|..+++.+.-+=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7777777788888888888888777555556666666666643
No 346
>smart00670 PINc Large family of predicted nucleotide-binding domains. From similarities to 5'-exonucleases, these domains are predicted to be RNases. PINc domains in nematode SMG-5 and yeast NMD4p are predicted to be involved in RNAi.
Probab=31.81 E-value=49 Score=25.69 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCCccHHHHHHHHhc-CcEEEecCc
Q 013497 396 GSNDDWYWLYAAVKL-RCLLVTNDE 419 (442)
Q Consensus 396 ~~~DD~~~l~aa~~~-~~~~vsnD~ 419 (442)
.+.+|..++-+|... ++++||+|.
T Consensus 83 ~~~~D~~il~~a~~~~~~~lvT~D~ 107 (111)
T smart00670 83 LLPNDALILATAKELGNVVLVTNDR 107 (111)
T ss_pred CCCChHHHHHHHHHCCCCEEEeCCc
Confidence 345889999999998 899999995
No 347
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.77 E-value=72 Score=25.26 Aligned_cols=27 Identities=7% Similarity=0.000 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS 51 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~ 51 (442)
-|..|+..|-..|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 589999999999999999999999876
No 348
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=31.05 E-value=3.1e+02 Score=22.83 Aligned_cols=164 Identities=14% Similarity=0.077 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC--CCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV--IPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~--~p~~ 101 (442)
.+..+...+...+....|.+.+.........+. ...+.... .+...+ .++.|...|........ ....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 167 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG-ALYELG--------DYEEALELYEKALELDPELNELA 167 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH-HHHHcC--------CHHHHHHHHHHHHhcCCCccchH
Confidence 566666667777778888888888776544331 12221111 344555 89999999999855222 1244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
..+......+...++.+.|...+.+.. .. .|+ ...+..+-..+...++.+.|...+.......-. ....+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 243 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKAL-KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLA 243 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHH-hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHH
Confidence 555555555778899999999999988 43 333 577888888899999999999999888765322 233444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 013497 180 KVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
..+...+..+++...+.+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 244 LLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 4444677788888888776654
No 349
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=30.90 E-value=2.7e+02 Score=21.98 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..++|..+-+.+...+-. .+..--+=+..+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~-----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL-----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC-----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 467788888877665533 4444445556788899999999988665 4899988877654 3788888777777
Q ss_pred HHHHHCC
Q 013497 161 EHMGLMG 167 (442)
Q Consensus 161 ~~M~~~g 167 (442)
..|..+|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 7787766
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.89 E-value=2.2e+02 Score=23.46 Aligned_cols=42 Identities=12% Similarity=0.299 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 87 RVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 87 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+.++.+....+.|+.-...+-++++-+.+++..|.++|+-.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444445566666666677777777777777777776665
No 351
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=30.62 E-value=1.2e+02 Score=23.72 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhccCCCCh
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET--GRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~--g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
-..+|..|...|+.++|..-+.++...... ......+|..+... ...+.+..++..+...+..+..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~--~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQH--HEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGH--HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccH--HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHH
Confidence 346777888999999999998886433222 22233444444443 2344566777777776554443
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.57 E-value=1.1e+02 Score=17.30 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHhHHHHHHhhHHHHHHHHHHcC
Q 013497 293 ALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 293 ~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.+...|+.++|.+.|++.+.+.+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 45567889999999999998764
No 353
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=30.29 E-value=3.2e+02 Score=22.75 Aligned_cols=86 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--ccHHHHHHHHHHcCCHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~ 158 (442)
+++.|++.|.+-...- +-+...||.-..++--.|+.++|++=+++..+-.|-+-.. ..|--=-..|-..|+-+.|..
T Consensus 58 ~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~ 136 (175)
T KOG4555|consen 58 DLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA 136 (175)
T ss_pred chHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence 5666666666554332 2245566666666666666666666555554222211000 011111122445666666666
Q ss_pred HHHHHHHCC
Q 013497 159 VEEHMGLMG 167 (442)
Q Consensus 159 l~~~M~~~g 167 (442)
=|+...+.|
T Consensus 137 DFe~AA~LG 145 (175)
T KOG4555|consen 137 DFEAAAQLG 145 (175)
T ss_pred hHHHHHHhC
Confidence 665555444
No 354
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=29.57 E-value=5e+02 Score=24.68 Aligned_cols=65 Identities=14% Similarity=-0.035 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL---EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p---~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...+|..+...+.+.|.++.|...+..+...+..+ +....-.-.+.+-..|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777788888888888888887776643211 222333445555567788888888877766
No 355
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.46 E-value=50 Score=33.82 Aligned_cols=26 Identities=8% Similarity=0.282 Sum_probs=17.6
Q ss_pred HHHHHHhCCCCCCHHHHHH-----HHHHHHh
Q 013497 45 LYESAHSQNLRLSLHHFNA-----LLYLCSD 70 (442)
Q Consensus 45 lf~~m~~~g~~p~~~ty~~-----ll~~~~~ 70 (442)
+++.+--.||+|+..||++ ++..|.+
T Consensus 255 IleDl~~LgIkpd~~TyTSDyF~~i~dycv~ 285 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTSDYFDEIMDYCVK 285 (712)
T ss_pred HHHHHHHhCcCcceeeechhhHHHHHHHHHH
Confidence 4445556799999988875 4555544
No 356
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=29.30 E-value=44 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCCCCccHHHHHHHHhcCcEEEecCc
Q 013497 394 PHGSNDDWYWLYAAVKLRCLLVTNDE 419 (442)
Q Consensus 394 ~~~~~DD~~~l~aa~~~~~~~vsnD~ 419 (442)
++.-.|||-++-.|+..+|.|.|+|.
T Consensus 88 ~~~D~~D~p~vALaL~l~~~IWT~Dk 113 (133)
T PF10130_consen 88 RDRDPDDWPFVALALQLNAPIWTEDK 113 (133)
T ss_pred cCCCcchHHHHHHHHHcCCCeecCcH
Confidence 34456999999999999999999995
No 357
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.79 E-value=2.4e+02 Score=23.53 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=39.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 158 EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
++.+.+.+.|++++..= ..+++.+...+..-.|.++++++++.+-..+..|.=-.++.|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 34556667787776553 567777777766688888888888877777665544444555
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=28.70 E-value=4.4e+02 Score=24.12 Aligned_cols=77 Identities=10% Similarity=0.020 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cCCCChHHHHHHHHH
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST--VRCVNEETGKIIEDW 216 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~--~~~p~~~t~~~li~~ 216 (442)
|.+.-|+.+.+.+.+.+|+.+.++=++.. +.|.-+=..|++.||-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45667888899999999999887766543 225556678999999999999998766655432 233444566666553
No 359
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.62 E-value=1.7e+02 Score=23.83 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 84 HGFRVFDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIK 125 (442)
Q Consensus 84 ~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~ 125 (442)
++.++|..|..+|+--. ..-|......+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555444322 3344455555555555555555553
No 360
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.23 E-value=3.7e+02 Score=23.77 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhH
Q 013497 108 ARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~ 128 (442)
+-.|.+.|.+++|.++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 345666666666666666655
No 361
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=27.79 E-value=2e+02 Score=21.39 Aligned_cols=44 Identities=2% Similarity=-0.044 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIP-N-EASVTSVARLAASKNDGDYAFVLI 124 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p-~-~~ty~~li~~~~~~g~~~~A~~~~ 124 (442)
.-++|+..+....+.-..| + -.++..|+.+|+..|+.++++++-
T Consensus 21 ~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 21 ETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred hHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999998877654443 3 257889999999999999887763
No 362
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=27.75 E-value=8.2e+02 Score=26.61 Aligned_cols=66 Identities=14% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 54 LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 54 ~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+.-|...|-.|--+.+..| +++.+-+.|++....-+ -....|+.+-..|..+|.--.|..++++-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g--------~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCG--------QFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred hcchHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 3344555555544444444 89999999988653322 245677888888888888888888887754
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=27.38 E-value=5.1e+02 Score=24.14 Aligned_cols=184 Identities=13% Similarity=0.071 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCH-----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ--------NLRLSL-----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQ 91 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~--------g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~ 91 (442)
.||.-.+.+.+..+++.|...+++.-+- ...|+. .+...|..++...+. ....++|.++.+.
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~-----~~~~~ka~~~l~~ 112 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDT-----YESVEKALNALRL 112 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHH
Confidence 6888888888775888887777764321 233333 223333344444331 1257778889888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHH---HHcCCHHHHHHHHHHHHHCCC
Q 013497 92 MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF---CENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 92 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~~M~~~g~ 168 (442)
+...... ...+|-.-|+.+.+.++.+++.+++..|. .. +.-....+..+++.+ .... ...|...+..+...-+
T Consensus 113 l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi-~~-~~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~ 188 (278)
T PF08631_consen 113 LESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMI-RS-VDHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRF 188 (278)
T ss_pred HHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHH-Hh-cccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHh
Confidence 8654433 23445555666667999999999999998 43 221345566666655 4443 3456666666665555
Q ss_pred CCCHH-HHH-HHHH-HHHh--------cCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHh
Q 013497 169 SLEQQ-EIA-ALLK-VSAE--------TGRVEKVYQYLQKLRS-TVRCVNEETGKIIEDWF 217 (442)
Q Consensus 169 ~p~~~-ty~-~li~-~~~~--------~g~~~~a~~ll~~m~~-~~~~p~~~t~~~li~~~ 217 (442)
.|... ... .++. .+.. .+.++.+.+++..... .+.+.+..+..++...+
T Consensus 189 ~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LL 249 (278)
T PF08631_consen 189 KSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLL 249 (278)
T ss_pred CCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 55543 111 1111 1111 1125555566664433 34455666555554433
No 364
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=27.37 E-value=5.1e+02 Score=24.07 Aligned_cols=172 Identities=13% Similarity=0.054 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 19 NPNPETNFLINLQSCTKSKDLTTAISLYESAHSQN--LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 19 ~~~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g--~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
..+|+.-|+.-+..+ +.|++++|.+.|+.+..+- -+-...+--.++.+..+.+ +.++|...+++....-
T Consensus 31 ~~p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--------~y~~A~~~~drFi~ly 101 (254)
T COG4105 31 NLPASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--------EYDLALAYIDRFIRLY 101 (254)
T ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHhC
Confidence 344444777776654 5799999999999998542 1223333334444666666 8999999999877765
Q ss_pred CCCCHHHHHHHHHHHHhcC-------CHH---HHHHHHHHhHhh---CCCCCCccc----H--------HHHHHHHHHcC
Q 013497 97 VIPNEASVTSVARLAASKN-------DGD---YAFVLIKRMNNE---FNVVPRLRT----Y--------DPALFCFCENL 151 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g-------~~~---~A~~~~~~m~~~---~g~~p~~~t----y--------~~li~~~~~~g 151 (442)
......-|---|.+++.-- +.. .|..-|++...+ ....||... . -.+-.-|.+.|
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544456666677766432 233 344444444311 112222211 1 12234466777
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 152 EAEKAYEVEEHMGLMGLSLE---QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 152 ~~~~A~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.+..|..=+++|.+. ..-+ ...+-.|..+|-..|..++|...-.-+..
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777765 2222 23444555667777777766665544443
No 365
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.01 E-value=2e+02 Score=21.51 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
++++.+.++.-.++|+++++.|.+.| ..++...+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45666777777788888888877765 3455555444
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.86 E-value=3.6e+02 Score=22.22 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=28.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 159 VEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 159 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.++.+..-.+.|+......-+++|.+..++..|.++|+-++.+
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444455567777777777777777777777777777666544
No 367
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=26.77 E-value=3.3e+02 Score=21.74 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 013497 84 HGFRVFDQMLS-NNVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEE 161 (442)
Q Consensus 84 ~a~~l~~~M~~-~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 161 (442)
++.+.+..++. .|+.| |+.+==++-..+.....++. ..+....|+.-+..|+. |+.+..+..+=
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHHH
Confidence 45666666554 57777 66655555555544444331 11111234444445544 66666665544
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC
Q 013497 162 HMGLMGLSLEQQEIAALLKVSAETG 186 (442)
Q Consensus 162 ~M~~~g~~p~~~ty~~li~~~~~~g 186 (442)
.+.. |...|..++...++.....|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 4444 56667777777766665544
No 368
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.69 E-value=6.6e+02 Score=26.00 Aligned_cols=111 Identities=9% Similarity=-0.009 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 138 (442)
.+|+.+...|.+. ++.+.+-++.=...|...+...+..|++ +.-+.++|...+-+|. ..|+.....
T Consensus 269 ~~~D~i~~~~~~~----------Id~~l~~l~~~~~~~~~~~~~l~~~L~~---~~l~~k~~~~~~~dll-~aGvDTTs~ 334 (519)
T KOG0159|consen 269 RAWDQIFDVGDKY----------IDNALEELEKQDSAGSEYTGSLLELLLR---KELSRKDAKANVMDLL-AAGVDTTSN 334 (519)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHhccccccchhHHHHHHHHH---ccCCHHHHHHHHHHHH-HHhccchHH
Confidence 4566666555443 4444444433222333444444444433 2346677777777887 777644444
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCH--HHHHHHHHHHHhc
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGL----SLEQ--QEIAALLKVSAET 185 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~----~p~~--~ty~~li~~~~~~ 185 (442)
|... .-|.-+.+.+.-.++.+|....-- .|+. -+--.+++||.|.
T Consensus 335 tl~~--~Ly~LarnP~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKE 385 (519)
T KOG0159|consen 335 TLLW--ALYELARNPEVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKE 385 (519)
T ss_pred HHHH--HHHHHhcChHHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHh
Confidence 4333 445555666666667777654311 1111 2223567777664
No 369
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.66 E-value=1.9e+02 Score=29.30 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHH
Q 013497 86 FRVFDQMLSNNVIPNEAS--VTSVARLAASKN--DGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g--~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l 159 (442)
.++++.+.+.|..++... -.+.+..++..| +.+-+ +.+. +.|..++... -.+.+...+..|+.+-
T Consensus 121 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv----~~Ll-~~g~din~~d~~g~tpL~~A~~~~~~~i---- 191 (480)
T PHA03100 121 YSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL----KLLI-DKGVDINAKNRYGYTPLHIAVEKGNIDV---- 191 (480)
T ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH----HHHH-HCCCCcccccCCCCCHHHHHHHhCCHHH----
Confidence 344555555665543321 123444555555 43333 3333 3344443321 1233444556665443
Q ss_pred HHHHHHCCCCCC
Q 013497 160 EEHMGLMGLSLE 171 (442)
Q Consensus 160 ~~~M~~~g~~p~ 171 (442)
.+.+.+.|..|+
T Consensus 192 v~~Ll~~ga~~~ 203 (480)
T PHA03100 192 IKFLLDNGADIN 203 (480)
T ss_pred HHHHHHcCCCcc
Confidence 333444454443
No 370
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.59 E-value=2.6e+02 Score=28.33 Aligned_cols=151 Identities=10% Similarity=0.118 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH-----HHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHF--NALLYL-----CSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty--~~ll~~-----~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.+.+...++.|+.+-+ +.+.+.|..|+.... .+.+.. ....+ ..++.+.+.+.|..+
T Consensus 36 ~t~L~~A~~~~~~~iv----k~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~------------~~~iv~~Ll~~ga~i 99 (480)
T PHA03100 36 VLPLYLAKEARNIDVV----KILLDNGADINSSTKNNSTPLHYLSNIKYNLTD------------VKEIVKLLLEYGANV 99 (480)
T ss_pred chhhhhhhccCCHHHH----HHHHHcCCCCCCccccCcCHHHHHHHHHHHhhc------------hHHHHHHHHHCCCCC
Confidence 3456666777776544 444556766554321 223333 33333 456666777778765
Q ss_pred CHH---HHHHHHHHHH-hcCCHHHHHHHHHHhHhhCCCCCCcc--cHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCC
Q 013497 100 NEA---SVTSVARLAA-SKNDGDYAFVLIKRMNNEFNVVPRLR--TYDPALFCFCENL--EAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 100 ~~~---ty~~li~~~~-~~g~~~~A~~~~~~m~~~~g~~p~~~--ty~~li~~~~~~g--~~~~A~~l~~~M~~~g~~p~ 171 (442)
+.. ..+.|..+.. ..|+.+-+..++ +.|..++.. .-.+.+..++..| +. ++.+.+.+.|..++
T Consensus 100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~----~iv~~Ll~~g~din 170 (480)
T PHA03100 100 NAPDNNGITPLLYAISKKSNSYSIVEYLL-----DNGANVNIKNSDGENLLHLYLESNKIDL----KILKLLIDKGVDIN 170 (480)
T ss_pred CCCCCCCCchhhHHHhcccChHHHHHHHH-----HcCCCCCccCCCCCcHHHHHHHcCCChH----HHHHHHHHCCCCcc
Confidence 432 2344444432 667766555444 344444332 2234566666777 44 45555666776664
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 172 QQEI--AALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 172 ~~ty--~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
...- .+-+...+..|..+-+ +.+.+.|..|+
T Consensus 171 ~~d~~g~tpL~~A~~~~~~~iv----~~Ll~~ga~~~ 203 (480)
T PHA03100 171 AKNRYGYTPLHIAVEKGNIDVI----KFLLDNGADIN 203 (480)
T ss_pred cccCCCCCHHHHHHHhCCHHHH----HHHHHcCCCcc
Confidence 4321 2344555666765444 34444555544
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.59 E-value=2.9e+02 Score=21.02 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=17.7
Q ss_pred hcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHH
Q 013497 113 SKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKA 156 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A 156 (442)
..|+-+.|.+++.... + . ...|...++++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-r---g--~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-Q---K--EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-c---C--CcHHHHHHHHHHHcCchhhh
Confidence 3345555555555544 1 1 22355555555555544433
No 372
>PRK14136 recX recombination regulator RecX; Provisional
Probab=26.52 E-value=5.8e+02 Score=24.44 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=46.7
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 19 NPNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 19 ~~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
...|.. .|+..|..|++... .-.+|.++|.+.|+. .+.+.++++.+++.|+
T Consensus 157 ~~~~~~~lk~kAL~lLSrReR--Se~ELr~KL~kkG~~--------------------------ee~IE~VIerLke~gY 208 (309)
T PRK14136 157 SSRPARSLKGRALGYLSRREY--SRAELARKLAPYADE--------------------------SDSVEPLLDALEREGW 208 (309)
T ss_pred ccccHHHHHHHHHHHhhcccc--cHHHHHHHHHHcCCC--------------------------HHHHHHHHHHHHHcCC
Confidence 334555 77777777765533 233556666666652 2334556666666666
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
.-|.---..+++... +. ..-..|-.++. ..||.++
T Consensus 209 LDDeRFAesyVr~R~--~k-kGp~rIrqELr-QKGId~e 243 (309)
T PRK14136 209 LSDARFAESLVHRRA--SR-VGSARIVSELK-RHAVGDA 243 (309)
T ss_pred cCHHHHHHHHHHHHh--hc-hhHHHHHHHHH-HcCCCHH
Confidence 555544445554422 22 23345556666 7777544
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=26.35 E-value=5.6e+02 Score=24.27 Aligned_cols=57 Identities=9% Similarity=-0.087 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH-----cCCHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE-----NLEAEKAYEVE 160 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~-----~g~~~~A~~l~ 160 (442)
..-.-|-.|+|.+.+..+.++-..-. ..--.-+...|.+++.-|.. .|.+++|+++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL-~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWL-QDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-hCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34455667889999998888877765 32222344558888877765 68999998876
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.03 E-value=3.4e+02 Score=21.63 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..++|..+.+.+...+. -.++.--+-+..+...|++++| +..- .....||+..|-+|- -.+.|..+++..-+
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~---~~~~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLP---QCHCYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHH---TTS--GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc---ccCCCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 57778888888877765 3444445555667778888888 2222 223467777776553 34777777777777
Q ss_pred HHHHHCC
Q 013497 161 EHMGLMG 167 (442)
Q Consensus 161 ~~M~~~g 167 (442)
..+..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7676554
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=26.03 E-value=3.4e+02 Score=21.63 Aligned_cols=79 Identities=13% Similarity=-0.038 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
..++|..+.+-.. ..+-. ...+--+-+..+.+.|++++|... ....-.||...|-+|-. .+.|..+++...|
T Consensus 21 cH~EA~tIa~wL~-~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLE-QEGEM-EEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHH-HTTTT-HHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCCcH-HHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 5677888877777 43321 112222233457789999999222 23345688888877755 3799999999999
Q ss_pred HHHHhcc
Q 013497 196 QKLRSTV 202 (442)
Q Consensus 196 ~~m~~~~ 202 (442)
.++..+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887665
No 376
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.71 E-value=8.7e+02 Score=26.80 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 171 EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
|...+..|++.+ ..++..+++.++++|...|..+..
T Consensus 245 d~~~i~~ll~aL-~~~d~~~~l~~~~~l~~~g~~~~~ 280 (830)
T PRK07003 245 DQTYMVRLLDAL-AAGDGPEILAVADEMALRSLSFST 280 (830)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHHH
Confidence 334455566654 458889999999999888775553
No 377
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.48 E-value=4.1e+02 Score=22.78 Aligned_cols=21 Identities=14% Similarity=0.604 Sum_probs=13.9
Q ss_pred eEEeeeccCCCCCCCcCCCcc
Q 013497 254 WVVKRGSVDESGKCCSCGDQL 274 (442)
Q Consensus 254 w~v~~~~~~~~g~c~~c~~~l 274 (442)
+.+....+..+|.|+.|...-
T Consensus 130 f~i~~~~l~~~GiC~~C~~~~ 150 (169)
T PRK11639 130 FALRHNVIEAHGLCAACVEVE 150 (169)
T ss_pred CEEeccEEEEEEEChhhcCcc
Confidence 444555667788888886653
No 378
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=25.44 E-value=72 Score=26.48 Aligned_cols=24 Identities=38% Similarity=0.397 Sum_probs=20.5
Q ss_pred CCCccHHHHHHHHhcC-cEEEecCc
Q 013497 396 GSNDDWYWLYAAVKLR-CLLVTNDE 419 (442)
Q Consensus 396 ~~~DD~~~l~aa~~~~-~~~vsnD~ 419 (442)
+.+-|-.++-+|++.+ +++.|||.
T Consensus 83 ~~~aDe~i~~~a~~~~~~iVaTnD~ 107 (136)
T COG1412 83 GRYADECLLEAALKHGRYIVATNDK 107 (136)
T ss_pred CCChHHHHHHHHHHcCCEEEEeCCH
Confidence 4555999999999998 89999994
No 379
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.35 E-value=3.2e+02 Score=22.78 Aligned_cols=60 Identities=15% Similarity=-0.005 Sum_probs=29.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCH
Q 013497 92 MLSNNVIPNEASVTSVARLAASK-NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (442)
Q Consensus 92 M~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 153 (442)
|++.|..++..= .+++..+... +..-.|.++++.++ +.+...+..|---.|..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~-~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLI-DMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHH-hhCCCCCHHHHHHHHHHHHHCCCE
Confidence 444555543222 2333444432 34556666666666 544444455544445566666654
No 380
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=25.33 E-value=9.5e+02 Score=26.52 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=55.6
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCC---C----------CCCcccHHHHHHHH
Q 013497 82 LRHGFRVFDQM-LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFN---V----------VPRLRTYDPALFCF 147 (442)
Q Consensus 82 ~~~a~~l~~~M-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g---~----------~p~~~ty~~li~~~ 147 (442)
.++..+.++.. ...|+..+......+++. ..|++.+|+.++++.. ..+ + .++...+..++.++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAi-a~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAI-AYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH-HhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44455555554 346777777666666554 4789999999987755 322 1 12223344455544
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 148 CENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 148 ~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
..|+..+++.++++|...|+.+.
T Consensus 257 -~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 -AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred -HcCCHHHHHHHHHHHHHhCCCHH
Confidence 55899999999999998887654
No 381
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=25.23 E-value=6.7e+02 Score=25.74 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
..++|+-++..--.|+.+-.-+.| +...|.++.+...+.... . -+.....+-..++....+.|++++|..+-+.|.
T Consensus 309 s~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~-~-~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 309 SQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVE-K-IIGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchh-h-hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 456777777666667776655555 456789999999988766 2 233455678888888889999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 165 LMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 165 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
...+...+ ....-...--..|.+++++-..+++.
T Consensus 385 ~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 385 SNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred ccccCChh-heeeecccHHHHhHHHHHHHHHHHHh
Confidence 77765322 22221112233566777776666653
No 382
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.15 E-value=1.4e+02 Score=26.43 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCC--------------CCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVV--------------PRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~--------------p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
+++-.|-+.-+|.++.++++.|. +..+. |....-|.....|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~-el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLH-ELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 383
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.98 E-value=4.3e+02 Score=25.81 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHH
Q 013497 62 NALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD 141 (442)
Q Consensus 62 ~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~ 141 (442)
..|+..+...+ ....+-+|.-+++........ |-..=-.+|+.|...|....|...|..+. -..++-|...|.
T Consensus 184 ~~Ll~~~~~~~-----~~~~l~~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L~-iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 184 HSLLDLYSKTK-----DSEYLLQAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESLD-IKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHhhccC-----CHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhcC-hHHHHHHHhHHH
Q ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 142 PALFCFCENLEAEKAY-EVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 142 ~li~~~~~~g~~~~A~-~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~ 196 (442)
. ..-+...|....+. .+++.....=..-...+=..++.+| +.|.+.+..++.+
T Consensus 257 ~-~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e~i~~af-~~gsysKi~ef~~ 310 (365)
T PF09797_consen 257 I-LDRLSTLGPFKSAPENLLENALKFYDNSEKETPEFIIKAF-ENGSYSKIEEFIE 310 (365)
T ss_pred H-HHHHhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhHHHHHH
No 384
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=24.65 E-value=8.1e+02 Score=26.59 Aligned_cols=95 Identities=7% Similarity=-0.005 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHHHHHHHHHHH
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-------------LSLEQQEIAALLKVS 182 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-------------~~p~~~ty~~li~~~ 182 (442)
..++....+.......|+..+......++... .|++..|..+++.+...| -.++......|++++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
.+ ++...++.++++|...|..+....-..+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 385
>TIGR03586 PseI pseudaminic acid synthase.
Probab=24.59 E-value=3e+02 Score=26.68 Aligned_cols=92 Identities=18% Similarity=0.115 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHHhcCCCccEEEccCccccCCCCCh--hhHHHHHHHHhcCeE---EeCCCCCCccHHHHHHHHhcCcE
Q 013497 339 SVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENP--SHRNLVEEWNEKGVL---YMTPHGSNDDWYWLYAAVKLRCL 413 (442)
Q Consensus 339 ~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~DD~~~l~aa~~~~~~ 413 (442)
+.+.++.+++.+.+. |...++++|- ++....++ -+-..|..+++.-.+ |.. ...+...-.||+..++.
T Consensus 145 t~~Ei~~Av~~i~~~--g~~~i~LlhC--~s~YP~~~~~~nL~~i~~lk~~f~~pVG~SD---Ht~G~~~~~aAva~GA~ 217 (327)
T TIGR03586 145 TLEEIQEAVEACREA--GCKDLVLLKC--TSSYPAPLEDANLRTIPDLAERFNVPVGLSD---HTLGILAPVAAVALGAC 217 (327)
T ss_pred CHHHHHHHHHHHHHC--CCCcEEEEec--CCCCCCCcccCCHHHHHHHHHHhCCCEEeeC---CCCchHHHHHHHHcCCC
Confidence 689999999999987 5566888884 33311122 233445666654332 322 33457888899998776
Q ss_pred EE----ecCcc---ccchhhccccchhhhhhh
Q 013497 414 LV----TNDEM---RDHIFELLGSNFFLKWKE 438 (442)
Q Consensus 414 ~v----snD~~---rdh~~~~~~~~~f~~W~~ 438 (442)
+| |-|.= -||.+ .++|.-|.+|-+
T Consensus 218 iIEkH~tld~~l~G~D~~~-Sl~p~e~~~lv~ 248 (327)
T TIGR03586 218 VIEKHFTLDRSDGGVDSAF-SLEPDEFKALVK 248 (327)
T ss_pred EEEeCCChhhcCCCCChhc-cCCHHHHHHHHH
Confidence 65 56664 59987 577777777654
No 386
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.59 E-value=8.2e+02 Score=25.57 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHH
Q 013497 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-------NNVIPNEASVTSVARLA 111 (442)
Q Consensus 39 ~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~-------~g~~p~~~ty~~li~~~ 111 (442)
...|...|+...+.|..-... .-.++.... .+....+++.|+..|....+ .| +.....-+-.+|
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~-~~g~~y~~G-----~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQY-ALGICYLAG-----TYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHH-HHHHHHhhc-----cccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 568899999988877521111 111111111 12223389999999998876 55 223455566666
Q ss_pred HhcC-----CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 013497 112 ASKN-----DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE-NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA-- 183 (442)
Q Consensus 112 ~~~g-----~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~-- 183 (442)
.+.. +.+.|+.++..-. ..| .|+...+-..+.-... ..+...|.++|..-...|..+-.. +-+++-...
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA-~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~-~la~~y~~G~g 375 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAA-ELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIY-RLALCYELGLG 375 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHH-hcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHH-HHHHHHHhCCC
Confidence 6643 5677999988877 666 3444333322222222 345778999999888877553211 111111111
Q ss_pred hcCCHHHHHHHHHHHHhcc
Q 013497 184 ETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~ 202 (442)
-.-+.++|..++.+-.+.+
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 2336778888888877776
No 387
>PHA02798 ankyrin-like protein; Provisional
Probab=24.36 E-value=3.1e+02 Score=28.04 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEA---SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~ 158 (442)
..++.+.+.+.|..+|.. -.|.|. ..+..+.. .-.++++.+. +.|..++.. -+++ +..+++.|.. .-.+
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh-~a~~~~~~-~~~~iv~~Ll-~~Gadvn~~d~~g~tp-L~~a~~~~~~-~~~~ 162 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLY-CLLSNGYI-NNLEILLFMI-ENGADTTLLDKDGFTM-LQVYLQSNHH-IDIE 162 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHH-HHHHcCCc-ChHHHHHHHH-HcCCCccccCCCCCcH-HHHHHHcCCc-chHH
Confidence 467888888888876643 233444 33444422 2234555555 566665543 3444 4455555541 1234
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 159 VEEHMGLMGLSLEQQE---IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 159 l~~~M~~~g~~p~~~t---y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
+.+.+.+.|..++... ..+.+..+.+.+-...-.++++.+.+.|..++.
T Consensus 163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~ 214 (489)
T PHA02798 163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK 214 (489)
T ss_pred HHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence 5556667777665431 112333333322111123566666677765543
No 388
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.21 E-value=2.6e+02 Score=25.71 Aligned_cols=58 Identities=21% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 142 PALFCFCENLEAEKAYEVEEHMGLM----G-LSLEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 142 ~li~~~~~~g~~~~A~~l~~~M~~~----g-~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
-|-..|.+.|++++|.++|+.+... | ..+...+...|..++.+.|+.+....+.-+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4556688899999999999888422 2 34556677788888888999988888776664
No 389
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=24.11 E-value=5.2e+02 Score=23.06 Aligned_cols=107 Identities=10% Similarity=-0.103 Sum_probs=84.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQ 173 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~ 173 (442)
+.|++.---.|-.++.+.|+..+|...|++-. ..-+.-|....-.+-++....++...|...++.+.+. +-.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 45888888889999999999999999999977 4334456666777778888899999999999988765 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
+.-.+-+.|...|....|..-|+..... .|++.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ 194 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQ 194 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHH
Confidence 3456778888899999999999988876 45554
No 390
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.90 E-value=1.5e+02 Score=21.03 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 134 VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 134 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
.|....++-++..+++.--+++++..+.+....|.. +..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666543 44555555555444
No 391
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.71 E-value=3.4e+02 Score=23.28 Aligned_cols=61 Identities=20% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH
Q 013497 92 MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 92 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 154 (442)
+++.|+.++..=. +++..+...+..-.|.++++.+. +.+..++..|---.|..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4555665443332 44444444555666777777776 5555556665555566666766654
No 392
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.47 E-value=1.5e+02 Score=16.77 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.|..+-..+...|++++|.+.|++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666777777777777776654
No 393
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=23.46 E-value=3.2e+02 Score=20.45 Aligned_cols=36 Identities=6% Similarity=0.038 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYA 120 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A 120 (442)
+.++|.++++.+..+|. .+|.++.+++-..|...-|
T Consensus 45 r~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 45 RRDQARQLLIDLETRGK----QAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCchHHH
Confidence 56667777776665553 3566666666666655444
No 394
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=23.44 E-value=1.3e+02 Score=15.78 Aligned_cols=26 Identities=12% Similarity=0.041 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+|..+-..+...|+.++|...|....
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555666666666666665554
No 395
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=23.33 E-value=53 Score=22.53 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE 149 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~ 149 (442)
|-.++...+|+.|. .+...|..+.||-.|.-|..
T Consensus 6 gy~~~lI~vFK~~p-Sr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 6 GYHEELIAVFKQMP-SRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred cCCHHHHHHHHcCc-ccccCccceeeeeeHHHHHH
Confidence 44566778888888 66777888888777776654
No 396
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.31 E-value=3.9e+02 Score=25.37 Aligned_cols=66 Identities=17% Similarity=0.066 Sum_probs=39.0
Q ss_pred HhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 93 LSNNVIPNE-ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 93 ~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
...|-.|+. .+|.++...-+.. -+++|...|.... ..-+.+...|...|....-.+ ..+|..+|..
T Consensus 21 In~G~vP~iesa~~~~~e~e~~~-A~~~A~~~Y~~~m-~~~~~~P~~~~~eL~~~H~~~--~~~A~~~F~~ 87 (297)
T PF02841_consen 21 INSGSVPCIESAWQAVAEAENRA-AVEKAVEHYEEQM-EQRVKLPTETLEELLELHEQC--EKEALEVFMK 87 (297)
T ss_dssp HHTTS--BHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHH--SS-SSHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhCCCccCHHHHHHHHHHH--HHHHHHHHHH
Confidence 455767775 5677776665543 5778888887743 222233455677777766554 5678888775
No 397
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=23.22 E-value=5.8e+02 Score=23.27 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC---CcccH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP---RLRTY--DPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
+.+...-+|.||--|.-...+.+|-+.|.. ..|+.| |..++ -.-|......|++++|++..+.+.-.-+..|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~---e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK---ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc---ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 455555666766666555566666666644 456666 22232 3567788999999999999888754333333
Q ss_pred HHHH-----HHHHHHHHhcCCHHHHHHHHHH
Q 013497 172 QQEI-----AALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 172 ~~ty-----~~li~~~~~~g~~~~a~~ll~~ 197 (442)
...+ -.+|. ..+.|..++|.++++.
T Consensus 99 ~~l~F~Lq~q~lIE-liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIE-LIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Confidence 3211 12222 3456677777776653
No 398
>PRK12356 glutaminase; Reviewed
Probab=23.13 E-value=6.9e+02 Score=24.12 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=14.8
Q ss_pred hCCCCCCHHHHHHHHHHHH
Q 013497 51 SQNLRLSLHHFNALLYLCS 69 (442)
Q Consensus 51 ~~g~~p~~~ty~~ll~~~~ 69 (442)
.-|.+|+...||+++.+=.
T Consensus 91 ~VG~EPSG~~FNsi~~Le~ 109 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIEL 109 (319)
T ss_pred HhCCCCCCCCcchHHHhhc
Confidence 4588999999999986533
No 399
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.12 E-value=2.6e+02 Score=28.02 Aligned_cols=102 Identities=10% Similarity=-0.033 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-----cccHHHHHHHHHHcCCHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-----LRTYDPALFCFCENLEAEK 155 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~ty~~li~~~~~~g~~~~ 155 (442)
......+.++.++++|- -..+.|++.+|.+.+.+-. ++.|+ ...|-..-....+.|+.++
T Consensus 241 ~~~~~~k~le~~k~~gN------------~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~e 305 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGN------------DAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLRE 305 (486)
T ss_pred hHhhhHHHHHHHHhhhh------------hHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchh
Confidence 33344555666666553 3468888888888888866 34444 3445555556667888888
Q ss_pred HHHHHHHHHHCCCCCCHHH-HHHHHHH--HHhcCCHHHHHHHHHHHHhc
Q 013497 156 AYEVEEHMGLMGLSLEQQE-IAALLKV--SAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~t-y~~li~~--~~~~g~~~~a~~ll~~m~~~ 201 (442)
|..-.++..+- |..- ...|.++ +...+.+++|.+-++.-.+.
T Consensus 306 aisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 306 AISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877766543 4332 2333333 33367777777777665543
No 400
>KOG3072 consensus Long chain fatty acid elongase [Lipid transport and metabolism]
Probab=22.81 E-value=4.1e+02 Score=25.04 Aligned_cols=82 Identities=18% Similarity=0.189 Sum_probs=51.3
Q ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcC-
Q 013497 277 VDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSG- 355 (442)
Q Consensus 277 ~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~- 355 (442)
++++. -...||..++.++.-|-..-..+.+..+..+| -...+=|+-|... . ..| +-.-.-+++.+.|.+.
T Consensus 66 F~L~~-pL~lWn~~La~FSi~g~lr~~~~~~~~~~~~G-f~~s~C~~~~~~~-~---~~~---fW~~~fvlSK~~ElgDT 136 (282)
T KOG3072|consen 66 FQLTK-PLNLWNFCLAAFSILGALRTIPEFLAVFRAAG-FKGSYCDANNLGL-S---VSG---FWSWLFVLSKAPELGDT 136 (282)
T ss_pred CCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hheeeeecccCCc-c---hHH---HHHHHHHHHhhhhhhce
Confidence 44444 57889999999999998888888888877766 4444444443221 0 011 1222334444444433
Q ss_pred -----CCccEEEccCcc
Q 013497 356 -----NKWPLVILHNKR 367 (442)
Q Consensus 356 -----~~~~l~~l~~~~ 367 (442)
.|+||++||.-|
T Consensus 137 ~FiVLRKrPliFlHWYH 153 (282)
T KOG3072|consen 137 IFIVLRKRPLIFLHWYH 153 (282)
T ss_pred eEEEeccCccEEEechh
Confidence 689999999876
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.58 E-value=4.8e+02 Score=29.03 Aligned_cols=119 Identities=7% Similarity=0.049 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCCC---------CCchhhHHHHHHHHHH-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN---LRLSLHHFNALLYLCSDSATDP---------SSKDSALRHGFRVFDQ- 91 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g---~~p~~~ty~~ll~~~~~~~~~~---------~~~~~~~~~a~~l~~~- 91 (442)
.|..||.-|...|+.++|++++.+..+.- -.--...+--++.....-+.+. ..-....+.+.++|-.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 58999999999999999999999987632 1101112222444333332110 0000122333333332
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHc
Q 013497 92 --MLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (442)
Q Consensus 92 --M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~ 150 (442)
-....+.|+ .+-.|......+.+...++.+. ...-.++..-.|.++.-|+..
T Consensus 586 ~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li-~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLI-SDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHh-HhccccchHHHHHHHHHHHHH
Confidence 011122222 2234566667777777777776 444455666777777777653
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.55 E-value=6e+02 Score=23.24 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
.---|-.-|.+.|++++|.++|+.+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3345666777888888888888776
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.46 E-value=4e+02 Score=25.62 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------
Q 013497 43 ISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS--------- 113 (442)
Q Consensus 43 ~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~--------- 113 (442)
.++++.|.+.++.|.-++|.=+.-+++..- .+.++..+++.+...-.. |..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF--------~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~i 329 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEF--------PLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERI 329 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccC--------CchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHH
Q ss_pred -cCCHHHHHHHHH
Q 013497 114 -KNDGDYAFVLIK 125 (442)
Q Consensus 114 -~g~~~~A~~~~~ 125 (442)
.|++....++++
T Consensus 330 l~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 330 LEGDFTVNMKLLQ 342 (370)
T ss_pred HhcchHHHHHHHh
No 404
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.96 E-value=9.7e+02 Score=25.45 Aligned_cols=117 Identities=17% Similarity=0.078 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
+..-|..|=.+....+ .+..|.+.|..-.. |..|+-.+...|+.+.-..+-..-+ +.|
T Consensus 665 s~~Kw~~Lg~~al~~~--------~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~-~~g---- 722 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAG--------ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK-KQG---- 722 (794)
T ss_pred chHHHHHHHHHHhhcc--------cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH-hhc----
Confidence 3466777777666666 78889999887642 6688888999999887776666666 544
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
..|....+|...|+++++.+++.+- +--|.. ++ +++.-..+++.+++...++.-...++
T Consensus 723 --~~N~AF~~~~l~g~~~~C~~lLi~t---~r~peA----al---~ArtYlps~vs~iv~~wk~~l~k~~~ 781 (794)
T KOG0276|consen 723 --KNNLAFLAYFLSGDYEECLELLIST---QRLPEA----AL---FARTYLPSQVSRIVELWKEDLSKVSE 781 (794)
T ss_pred --ccchHHHHHHHcCCHHHHHHHHHhc---CcCcHH----HH---HHhhhChHHHHHHHHHHHHHhhhhhh
Confidence 2566677888999999999887543 333322 11 22333346667777766655433333
No 405
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=21.93 E-value=1.7e+02 Score=21.66 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013497 20 PNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLS 57 (442)
Q Consensus 20 ~~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~ 57 (442)
.+|+.....+++.+.+ +++.++...+.++...|+.++
T Consensus 2 ~p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~ 38 (89)
T PF08542_consen 2 WPPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS 38 (89)
T ss_dssp S--HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH
Confidence 3555566667776655 599999999999998888544
No 406
>PRK09857 putative transposase; Provisional
Probab=21.92 E-value=5.6e+02 Score=24.30 Aligned_cols=64 Identities=5% Similarity=0.000 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 142 PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 142 ~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.++.-..+.|+.++..++++.+.+. +.+.....-++..-+.+.|..+++.++..+|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333444444444444444433 222222233344444444544555566666666655444
No 407
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=21.83 E-value=3.4e+02 Score=28.18 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC--cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
..-++.-|.+.+++++|..++..|. .+..+. ..+.+.+.+.+.+.---++.+..++.+...=..|....-.+...-
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn--W~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~e 488 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN--WNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLE 488 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--ccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHH
Confidence 3467789999999999999999986 222221 123344445555554445555556666544333322211222222
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 013497 182 SAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~ 201 (442)
|.. --.+-|.++|+.|.++
T Consensus 489 y~d-~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 489 YRD-PVSDLARRFFHHLLRY 507 (545)
T ss_pred HHH-HHHHHHHHHHHHHHHh
Confidence 222 1223356666666554
No 408
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.78 E-value=3.9e+02 Score=20.76 Aligned_cols=61 Identities=13% Similarity=-0.019 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcC--CHHHHHHHHHHHHHCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENL--EAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~g~ 168 (442)
..+|.-|...++.++|.+-+.++. .....+ .....+|..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~-~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELK-LPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhC-CCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 456777888888888888888877 322221 22333444444332 23334455555554443
No 409
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=21.76 E-value=6.9e+02 Score=26.04 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHhcC--CHHHHHHHHHHhHhhC-----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 110 LAASKN--DGDYAFVLIKRMNNEF-----NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 110 ~~~~~g--~~~~A~~~~~~m~~~~-----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
-|.... ++-+|..+.+.+. .. .|--+...||++|++- .+....++..|.+.|+-.| +.|++|+.-.
T Consensus 587 ~Y~~~d~~nI~~a~~my~~i~-e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~iL~D-iHF~aLL~K~ 659 (782)
T PF07218_consen 587 KYVEHDKSNIYEALQMYSYIA-EYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPILKD-IHFEALLNKE 659 (782)
T ss_pred HHHhhchHHHHHHHHHHHHHH-HHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcchhHH-HHHHHHhhhc
Confidence 344444 6667777666655 21 2345777888888765 5677788888888887644 4578888766
Q ss_pred Hh
Q 013497 183 AE 184 (442)
Q Consensus 183 ~~ 184 (442)
-+
T Consensus 660 kK 661 (782)
T PF07218_consen 660 KK 661 (782)
T ss_pred cc
Confidence 54
No 410
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.57 E-value=4.8e+02 Score=21.74 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=37.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH
Q 013497 88 VFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 88 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 154 (442)
+-..+++.|.+++.. =-.+++.+.+.+..-.|.+++++++ ..+-..+..|-=..++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~-~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELR-EEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHH-HhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 444556666654322 2456666666666677777777777 5444444444444466677777653
No 411
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.39 E-value=3e+02 Score=19.26 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHH
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA-----ETGRVEKVYQY 194 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~-----~~g~~~~a~~l 194 (442)
+.+.|++=+|-++++++=..--.|....|..||...+ +.|+..-|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3356777777777777643222234555666666533 35666655554
No 412
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=21.35 E-value=1.8e+02 Score=24.25 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIED 215 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~ 215 (442)
..|...+...++++|..+|+..+..+|+-++.
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 45666666777777777777777777665554
No 413
>PF12813 XPG_I_2: XPG domain containing
Probab=20.97 E-value=1.4e+02 Score=27.59 Aligned_cols=41 Identities=32% Similarity=0.396 Sum_probs=28.5
Q ss_pred HHHHHHhc---CeEEeCCCCCCccHHHHHHHHhcCcEEEecCccccc
Q 013497 380 LVEEWNEK---GVLYMTPHGSNDDWYWLYAAVKLRCLLVTNDEMRDH 423 (442)
Q Consensus 380 ~~~~~~~~---~~~~~~~~~~~DD~~~l~aa~~~~~~~vsnD~~rdh 423 (442)
+++-|++. +..+..=++ +-|.|.--.|-+.+|.|+|||- |.
T Consensus 9 ~~e~L~~~~~~~~~~~~~~~-EAD~~~A~~A~~~~~~VLt~DS--Df 52 (246)
T PF12813_consen 9 FIEALRESWRYGVPVVQCPG-EADRECAALARKWGCPVLTNDS--DF 52 (246)
T ss_pred HHHHHHHHhhcCCcEEEcCc-cchHHHHHHHHHcCCeEEccCC--CE
Confidence 45666665 555444444 5788888888888999999994 55
No 414
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.92 E-value=9.4e+02 Score=27.66 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhc
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~ 218 (442)
++-.+.+++.=...+.+|..+..+|.-.|-..++.. ..-+-..|+.=.++.|...+++|..-.+.++...+..++.+|
T Consensus 525 ~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E-~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ay- 602 (1251)
T KOG0414|consen 525 LVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKE-AIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAY- 602 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHH-
Q ss_pred cccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCC-------cCCCcccccCCCHHHHHHHHHHH
Q 013497 219 GQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCC-------SCGDQLACVDIDDAETERFAQSV 291 (442)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~-------~c~~~l~~~~l~~~d~~~~~~~I 291 (442)
.++ .+...|.|. .=.-....++.+-.|..++-.++
T Consensus 603 -----------k~l---------------------------~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl 644 (1251)
T KOG0414|consen 603 -----------KQL---------------------------YFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVL 644 (1251)
T ss_pred -----------HHH---------------------------hccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHH
Q ss_pred HHHhHHHHHHhhH--HHHHHH-HHHcCCcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCCcc---------
Q 013497 292 AALAMEREVKANF--SEFQDW-LEKNANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWP--------- 359 (442)
Q Consensus 292 ~~~~~~g~~~~a~--~~F~~m-~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~~~--------- 359 (442)
..+...|.++.++ .+|..+ +...+....-.-|.-...+... .=..+-+..=.+.+.+. |-.+
T Consensus 645 ~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s----~s~~~Iv~~~~~~lv~i--glg~p~l~~~~L~ 718 (1251)
T KOG0414|consen 645 CELVARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMAS----RSKPSIVLANLDLLVQI--GLGEPRLAVDVLA 718 (1251)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhh----ccChhhhhhhhHHHHHh--ccCcHHHHHHHHH
Q ss_pred ---EEEccCcc----ccCCCCChhhHHHHHHHHhcCeEEeCCCCCCccHH
Q 013497 360 ---LVILHNKR----LRSLWENPSHRNLVEEWNEKGVLYMTPHGSNDDWY 402 (442)
Q Consensus 360 ---l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~~ 402 (442)
.++..|+. -+.+-..+....+.+.+..--..++-+.. ||||
T Consensus 719 ~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d--~~~~ 766 (1251)
T KOG0414|consen 719 RYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKAD--DDWF 766 (1251)
T ss_pred HHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcc--hHHH
No 415
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.66 E-value=7.9e+02 Score=23.90 Aligned_cols=106 Identities=9% Similarity=0.010 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG----LMGLSLEQ 172 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~----~~g~~p~~ 172 (442)
+..|..-+++|..+ ...++++-.+..+...+..|=.--....-..-.-||+.||.+.|++.+..-. ..|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44566666665543 1222333333333333111211112334455566888888888887766553 34777777
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHhccCC
Q 013497 173 QEIAALLKV-SAETGRVEKVYQYLQKLRSTVRC 204 (442)
Q Consensus 173 ~ty~~li~~-~~~~g~~~~a~~ll~~m~~~~~~ 204 (442)
+.+..=+.. |....-+.+..+..+.|.+.|..
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 665543332 22233333444444444444443
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.51 E-value=4.6e+02 Score=25.47 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q 013497 82 LRHGFRVFDQMLS 94 (442)
Q Consensus 82 ~~~a~~l~~~M~~ 94 (442)
+.+|+++|.+..+
T Consensus 232 i~~AE~l~k~ALk 244 (556)
T KOG3807|consen 232 IVDAERLFKQALK 244 (556)
T ss_pred HHHHHHHHHHHHH
Confidence 4555666655543
No 417
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=20.38 E-value=3.8e+02 Score=25.98 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHHhcCCCccE--EEccCccccC-------CCCChhhHHHHHHHHhcCeE---EeCCCCCCccHHHHHH
Q 013497 339 SVPQLDAVVKKLYERSGNKWPL--VILHNKRLRS-------LWENPSHRNLVEEWNEKGVL---YMTPHGSNDDWYWLYA 406 (442)
Q Consensus 339 ~~~~~~~vv~~l~~~~~~~~~l--~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~DD~~~l~a 406 (442)
+-+.+.++++.+++. ..|+ +.+--.+..+ +...|..+++++++++++.- ...|....|+.|-+|.
T Consensus 22 ~~~~v~~~~~~~~~~---~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~ 98 (339)
T cd06604 22 PEEEVREIADEFRER---DIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYE 98 (339)
T ss_pred CHHHHHHHHHHHHHh---CCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHH
Confidence 457788999999987 4554 3333222222 45566778899999997743 5678777776677777
Q ss_pred HHhcCcEEEecCc
Q 013497 407 AVKLRCLLVTNDE 419 (442)
Q Consensus 407 a~~~~~~~vsnD~ 419 (442)
....+.++|.+..
T Consensus 99 e~~~~g~~v~~~~ 111 (339)
T cd06604 99 EGLENDYFVKDPD 111 (339)
T ss_pred HHHHCCeEEECCC
Confidence 7777777776643
No 418
>PHA02743 Viral ankyrin protein; Provisional
Probab=20.22 E-value=4.5e+02 Score=22.16 Aligned_cols=20 Identities=0% Similarity=0.071 Sum_probs=10.8
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 013497 34 TKSKDLTTAISLYESAHSQN 53 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g 53 (442)
++.|+++...++++.+.+.|
T Consensus 28 ~~~g~~~~l~~~~~~l~~~g 47 (166)
T PHA02743 28 CRTGNIYELMEVAPFISGDG 47 (166)
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 35566665555555554444
No 419
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=20.21 E-value=1.6e+02 Score=27.11 Aligned_cols=92 Identities=24% Similarity=0.282 Sum_probs=54.5
Q ss_pred ChhhHHHHHHHHHHhcCCCccEEEccCccccCCCCChh--hHHHHHHHHhcCeEEeCCCC---CCccHHHHHHHHhcCcE
Q 013497 339 SVPQLDAVVKKLYERSGNKWPLVILHNKRLRSLWENPS--HRNLVEEWNEKGVLYMTPHG---SNDDWYWLYAAVKLRCL 413 (442)
Q Consensus 339 ~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~DD~~~l~aa~~~~~~ 413 (442)
+.+.|+.+|+.+.+. +..++++||=-- ..-.++. +...|..|++. |-+|-| ...++..-.+|+..++.
T Consensus 124 tl~EI~~Av~~~~~~--~~~~l~llHC~s--~YP~~~e~~NL~~i~~L~~~---f~~~vG~SDHt~g~~~~~~AvalGA~ 196 (241)
T PF03102_consen 124 TLEEIERAVEVLREA--GNEDLVLLHCVS--SYPTPPEDVNLRVIPTLKER---FGVPVGYSDHTDGIEAPIAAVALGAR 196 (241)
T ss_dssp -HHHHHHHHHHHHHH--CT--EEEEEE-S--SSS--GGG--TTHHHHHHHH---STSEEEEEE-SSSSHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHhc--CCCCEEEEecCC--CCCCChHHcChHHHHHHHHh---cCCCEEeCCCCCCcHHHHHHHHcCCe
Confidence 689999999999888 678888886432 1111122 22345556553 334444 33367888899988765
Q ss_pred EE-------ecCccccchhhccccchhhhhhh
Q 013497 414 LV-------TNDEMRDHIFELLGSNFFLKWKE 438 (442)
Q Consensus 414 ~v-------snD~~rdh~~~~~~~~~f~~W~~ 438 (442)
+| -|..--||.+ .++|.-|.+|-+
T Consensus 197 vIEKHfTldr~~~g~Dh~~-Sl~p~el~~lv~ 227 (241)
T PF03102_consen 197 VIEKHFTLDRNLKGPDHKF-SLEPDELKQLVR 227 (241)
T ss_dssp EEEEEB-S-TTSCSTTGCC-CB-HHHHHHHHH
T ss_pred EEEEEEECCCCCCCCChhh-cCCHHHHHHHHH
Confidence 54 2346789998 488888877765
Done!