Query 013497
Match_columns 442
No_of_seqs 433 out of 2902
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 11:41:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.7E-95 1.3E-99 741.4 45.7 435 3-442 6-446 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.1E-32 2.8E-36 274.3 19.8 224 40-314 7-246 (501)
3 3v33_A Ribonuclease ZC3H12A; r 99.9 1.4E-22 4.9E-27 177.6 6.9 120 316-442 24-154 (223)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2E-22 6.8E-27 212.1 8.2 148 25-186 129-286 (1134)
5 3v32_B Ribonuclease ZC3H12A; r 99.9 5.1E-22 1.7E-26 170.4 7.4 122 315-442 23-154 (185)
6 3spa_A Mtrpol, DNA-directed RN 99.8 1E-21 3.5E-26 206.8 9.5 147 57-217 126-282 (1134)
7 2xpi_A Anaphase-promoting comp 99.7 1.5E-16 5.2E-21 164.7 22.0 276 22-354 303-580 (597)
8 2xpi_A Anaphase-promoting comp 99.7 1.3E-15 4.5E-20 157.7 25.7 235 25-315 341-581 (597)
9 1w3b_A UDP-N-acetylglucosamine 99.4 1.5E-10 5.2E-15 113.0 24.8 176 25-217 103-281 (388)
10 2y4t_A DNAJ homolog subfamily 99.3 6E-10 2.1E-14 110.6 26.8 251 19-315 20-288 (450)
11 1w3b_A UDP-N-acetylglucosamine 99.3 2.1E-10 7.3E-15 111.9 22.1 196 25-238 69-266 (388)
12 2y4t_A DNAJ homolog subfamily 99.3 8E-10 2.7E-14 109.7 23.7 236 25-315 62-326 (450)
13 1b89_A Protein (clathrin heavy 99.2 1.4E-11 4.7E-16 121.0 7.6 220 24-329 33-252 (449)
14 4eqf_A PEX5-related protein; a 99.1 4.5E-09 1.5E-13 101.4 21.5 233 25-314 67-311 (365)
15 3mkr_A Coatomer subunit epsilo 99.1 7.3E-09 2.5E-13 97.6 21.7 178 20-217 61-244 (291)
16 3mkr_A Coatomer subunit epsilo 99.1 4.2E-09 1.4E-13 99.2 19.9 235 19-318 27-269 (291)
17 1fch_A Peroxisomal targeting s 99.1 3.2E-08 1.1E-12 95.1 25.9 234 25-315 66-316 (368)
18 2vq2_A PILW, putative fimbrial 99.1 8E-08 2.7E-12 85.1 24.6 185 21-217 4-192 (225)
19 2gw1_A Mitochondrial precursor 99.1 4.2E-08 1.4E-12 98.7 25.3 196 25-237 8-298 (514)
20 3nf1_A KLC 1, kinesin light ch 99.0 3.4E-08 1.2E-12 92.2 22.0 174 18-200 20-223 (311)
21 2ho1_A Type 4 fimbrial biogene 99.0 5.6E-08 1.9E-12 88.3 22.5 180 25-217 39-219 (252)
22 3cv0_A Peroxisome targeting si 99.0 1.3E-07 4.3E-12 89.0 24.4 234 25-316 23-272 (327)
23 2vq2_A PILW, putative fimbrial 99.0 8.7E-08 3E-12 84.9 21.5 176 25-213 44-221 (225)
24 2ho1_A Type 4 fimbrial biogene 99.0 9.5E-08 3.2E-12 86.7 22.1 172 25-210 73-245 (252)
25 3uq3_A Heat shock protein STI1 99.0 6.5E-08 2.2E-12 87.7 20.5 225 25-314 7-237 (258)
26 3hym_B Cell division cycle pro 99.0 1.5E-07 5.2E-12 88.6 23.3 242 25-315 24-267 (330)
27 3hym_B Cell division cycle pro 99.0 1.8E-07 6.2E-12 88.0 23.8 235 25-314 58-300 (330)
28 2gw1_A Mitochondrial precursor 98.9 3.4E-08 1.2E-12 99.4 19.0 235 25-316 239-481 (514)
29 1fch_A Peroxisomal targeting s 98.9 7.2E-08 2.5E-12 92.6 20.5 181 25-222 100-298 (368)
30 1b89_A Protein (clathrin heavy 98.9 3.2E-09 1.1E-13 104.3 10.7 159 21-217 58-217 (449)
31 4eqf_A PEX5-related protein; a 98.9 9.4E-08 3.2E-12 92.1 20.6 197 25-238 101-310 (365)
32 2q7f_A YRRB protein; TPR, prot 98.9 8.7E-08 3E-12 86.2 19.1 198 25-238 25-222 (243)
33 3as5_A MAMA; tetratricopeptide 98.9 1.6E-07 5.4E-12 80.2 19.6 164 25-201 10-173 (186)
34 2pl2_A Hypothetical conserved 98.9 3.2E-07 1.1E-11 82.1 21.7 188 25-238 7-207 (217)
35 3ieg_A DNAJ homolog subfamily 98.9 9.8E-07 3.3E-11 83.8 26.2 178 25-217 5-198 (359)
36 3cv0_A Peroxisome targeting si 98.9 5.4E-07 1.8E-11 84.6 23.5 200 25-238 57-308 (327)
37 1xnf_A Lipoprotein NLPI; TPR, 98.8 2.9E-07 1E-11 84.3 20.4 227 34-314 16-245 (275)
38 2q7f_A YRRB protein; TPR, prot 98.8 3.5E-07 1.2E-11 82.2 20.0 164 25-201 59-222 (243)
39 3ieg_A DNAJ homolog subfamily 98.8 2.3E-06 7.9E-11 81.2 25.9 230 25-313 73-335 (359)
40 1ouv_A Conserved hypothetical 98.8 6.9E-06 2.4E-10 75.6 26.7 169 25-217 8-192 (273)
41 2pl2_A Hypothetical conserved 98.7 5.5E-07 1.9E-11 80.5 16.9 161 25-199 41-212 (217)
42 3fp2_A TPR repeat-containing p 98.7 2.3E-06 7.9E-11 86.5 23.6 246 25-318 245-496 (537)
43 3vtx_A MAMA; tetratricopeptide 98.7 3.1E-06 1.1E-10 72.8 21.2 164 25-201 7-170 (184)
44 3uq3_A Heat shock protein STI1 98.7 9E-07 3.1E-11 80.0 17.6 165 25-200 40-235 (258)
45 3u4t_A TPR repeat-containing p 98.7 1.4E-05 4.7E-10 73.0 25.8 241 26-315 6-252 (272)
46 2fo7_A Synthetic consensus TPR 98.7 1.2E-06 4.1E-11 70.2 15.9 127 26-164 4-130 (136)
47 1xnf_A Lipoprotein NLPI; TPR, 98.6 4.8E-07 1.6E-11 82.9 14.7 178 25-217 45-225 (275)
48 3edt_B KLC 2, kinesin light ch 98.6 7.6E-07 2.6E-11 81.5 16.0 158 34-200 12-197 (283)
49 3fp2_A TPR repeat-containing p 98.6 2.9E-06 9.8E-11 85.8 21.6 187 81-315 217-409 (537)
50 1ouv_A Conserved hypothetical 98.6 4.1E-05 1.4E-09 70.3 27.3 170 24-217 39-228 (273)
51 2fo7_A Synthetic consensus TPR 98.6 2.4E-06 8.2E-11 68.4 16.0 130 60-201 3-132 (136)
52 2ond_A Cleavage stimulation fa 98.6 6.4E-06 2.2E-10 77.6 20.9 167 21-201 95-270 (308)
53 3nf1_A KLC 1, kinesin light ch 98.6 1.5E-06 5.2E-11 80.9 16.0 167 25-200 71-306 (311)
54 2ond_A Cleavage stimulation fa 98.6 1.2E-05 4.1E-10 75.7 22.3 179 25-217 52-251 (308)
55 3edt_B KLC 2, kinesin light ch 98.6 1E-06 3.5E-11 80.6 14.4 167 25-200 45-280 (283)
56 4gyw_A UDP-N-acetylglucosamine 98.5 5.6E-06 1.9E-10 87.5 20.5 165 20-200 4-173 (723)
57 4i17_A Hypothetical protein; T 98.4 3.5E-05 1.2E-09 68.6 20.3 150 25-188 9-169 (228)
58 4abn_A Tetratricopeptide repea 98.4 1.3E-05 4.4E-10 80.6 18.8 190 25-239 104-315 (474)
59 3u4t_A TPR repeat-containing p 98.4 2.5E-05 8.7E-10 71.2 19.0 164 25-201 39-208 (272)
60 3as5_A MAMA; tetratricopeptide 98.3 2.6E-05 9E-10 66.1 17.0 149 59-222 9-157 (186)
61 2h6f_A Protein farnesyltransfe 98.3 0.00012 4.2E-09 71.2 23.2 182 20-217 92-284 (382)
62 3ulq_A Response regulator aspa 98.3 4.7E-05 1.6E-09 73.8 19.0 234 31-314 111-369 (383)
63 4abn_A Tetratricopeptide repea 98.2 1E-05 3.5E-10 81.3 13.4 167 25-198 139-318 (474)
64 3vtx_A MAMA; tetratricopeptide 98.2 0.00018 6.2E-09 61.5 19.3 166 57-237 4-169 (184)
65 3mv2_B Coatomer subunit epsilo 98.2 8.1E-05 2.8E-09 69.8 18.1 145 42-200 85-239 (310)
66 2ooe_A Cleavage stimulation fa 98.2 9.4E-05 3.2E-09 75.2 20.0 168 20-201 316-492 (530)
67 4a1s_A PINS, partner of inscut 98.2 1.5E-05 5.1E-10 77.6 13.4 242 25-313 50-332 (411)
68 2ooe_A Cleavage stimulation fa 98.2 0.00012 4.1E-09 74.4 20.5 179 25-217 274-473 (530)
69 3ro2_A PINS homolog, G-protein 98.1 7.3E-05 2.5E-09 69.6 16.2 168 25-201 7-212 (338)
70 1qqe_A Vesicular transport pro 98.1 2.9E-05 9.9E-10 72.6 13.3 165 25-200 39-227 (292)
71 3mv2_B Coatomer subunit epsilo 98.1 9.1E-05 3.1E-09 69.5 16.4 127 85-217 85-221 (310)
72 3sf4_A G-protein-signaling mod 98.1 6.1E-05 2.1E-09 72.7 15.6 243 25-313 11-296 (406)
73 3q15_A PSP28, response regulat 98.1 0.00016 5.5E-09 69.9 18.6 230 32-312 110-364 (378)
74 4a1s_A PINS, partner of inscut 98.1 1.9E-05 6.6E-10 76.9 11.5 243 25-312 88-371 (411)
75 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00055 1.9E-08 60.9 20.3 164 25-201 6-213 (225)
76 1xi4_A Clathrin heavy chain; a 98.1 0.00055 1.9E-08 75.6 23.4 253 35-355 1088-1344(1630)
77 3ro2_A PINS homolog, G-protein 98.0 0.00011 3.8E-09 68.4 15.0 244 25-313 45-332 (338)
78 2vsy_A XCC0866; transferase, g 98.0 0.00018 6.3E-09 73.7 17.7 150 37-200 3-156 (568)
79 2h6f_A Protein farnesyltransfe 98.0 0.00024 8.3E-09 69.1 17.3 177 25-217 133-319 (382)
80 3sf4_A G-protein-signaling mod 98.0 0.0001 3.5E-09 71.1 14.6 244 25-313 49-336 (406)
81 3u3w_A Transcriptional activat 98.0 0.00028 9.4E-09 65.7 17.0 168 25-200 77-265 (293)
82 3qky_A Outer membrane assembly 98.0 0.00095 3.2E-08 60.6 20.2 170 25-207 17-228 (261)
83 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00056 1.9E-08 63.5 18.9 167 25-199 77-264 (293)
84 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00054 1.8E-08 59.9 17.5 124 26-165 9-149 (213)
85 2r5s_A Uncharacterized protein 97.9 8.1E-05 2.8E-09 63.6 11.5 162 25-200 8-172 (176)
86 4gyw_A UDP-N-acetylglucosamine 97.9 0.00057 2E-08 72.1 20.0 163 58-237 9-173 (723)
87 3urz_A Uncharacterized protein 97.9 0.00037 1.3E-08 61.4 15.4 164 30-213 11-196 (208)
88 4i17_A Hypothetical protein; T 97.9 0.00061 2.1E-08 60.4 16.9 136 57-206 6-149 (228)
89 1na0_A Designed protein CTPR3; 97.9 0.00057 1.9E-08 53.4 14.7 97 101-200 9-105 (125)
90 1qqe_A Vesicular transport pro 97.9 0.00021 7.2E-09 66.6 13.9 163 25-198 79-266 (292)
91 2xm6_A Protein corresponding t 97.8 0.012 4.1E-07 58.8 27.4 160 25-201 113-288 (490)
92 3qou_A Protein YBBN; thioredox 97.8 0.00025 8.7E-09 65.9 13.9 156 28-197 122-280 (287)
93 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.0018 6.1E-08 56.4 18.6 115 81-201 21-150 (213)
94 2xm6_A Protein corresponding t 97.8 0.015 5.1E-07 58.0 27.7 149 36-201 56-216 (490)
95 1na0_A Designed protein CTPR3; 97.8 0.00049 1.7E-08 53.8 13.0 104 76-183 19-122 (125)
96 1xi4_A Clathrin heavy chain; a 97.8 0.0037 1.3E-07 69.2 23.5 214 25-305 1136-1376(1630)
97 3gw4_A Uncharacterized protein 97.7 0.00029 1E-08 60.8 12.2 159 34-201 3-176 (203)
98 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00032 1.1E-08 65.8 12.9 165 25-199 38-222 (307)
99 1a17_A Serine/threonine protei 97.7 0.001 3.5E-08 55.1 14.5 94 25-128 15-108 (166)
100 1a17_A Serine/threonine protei 97.7 0.0016 5.4E-08 54.0 15.5 128 60-199 15-144 (166)
101 3ulq_A Response regulator aspa 97.7 0.00052 1.8E-08 66.3 13.6 165 25-200 186-367 (383)
102 3rjv_A Putative SEL1 repeat pr 97.6 0.0089 3.1E-07 52.5 20.5 165 25-203 20-199 (212)
103 2e2e_A Formate-dependent nitri 97.6 0.00062 2.1E-08 57.8 12.2 135 76-217 20-158 (177)
104 3q15_A PSP28, response regulat 97.6 0.001 3.5E-08 64.1 15.0 164 25-200 184-364 (378)
105 2vyi_A SGTA protein; chaperone 97.6 0.0017 5.9E-08 51.0 13.4 115 25-152 14-129 (131)
106 4ga2_A E3 SUMO-protein ligase 97.6 0.0008 2.7E-08 55.8 11.7 134 76-217 7-144 (150)
107 2pzi_A Probable serine/threoni 97.6 0.00094 3.2E-08 70.2 14.8 187 34-238 402-598 (681)
108 1hz4_A MALT regulatory protein 97.5 0.0053 1.8E-07 58.6 19.0 167 25-200 95-281 (373)
109 1hz4_A MALT regulatory protein 97.5 0.0056 1.9E-07 58.4 19.0 167 25-200 137-321 (373)
110 4ga2_A E3 SUMO-protein ligase 97.5 0.00052 1.8E-08 57.0 10.0 140 32-187 6-149 (150)
111 2vyi_A SGTA protein; chaperone 97.5 0.0023 7.7E-08 50.3 13.5 82 81-165 27-108 (131)
112 2vsy_A XCC0866; transferase, g 97.5 0.003 1E-07 64.6 17.0 130 25-167 25-158 (568)
113 2lni_A Stress-induced-phosphop 97.5 0.0034 1.2E-07 49.6 13.8 94 25-128 18-111 (133)
114 3qou_A Protein YBBN; thioredox 97.4 0.0037 1.3E-07 57.9 15.9 144 61-217 120-265 (287)
115 2lni_A Stress-induced-phosphop 97.4 0.0022 7.6E-08 50.7 12.5 97 100-200 15-112 (133)
116 1elr_A TPR2A-domain of HOP; HO 97.4 0.0037 1.3E-07 49.1 13.8 112 101-216 4-121 (131)
117 1p5q_A FKBP52, FK506-binding p 97.4 0.0031 1.1E-07 60.0 14.8 143 25-199 149-292 (336)
118 2dba_A Smooth muscle cell asso 97.3 0.0086 2.9E-07 48.3 15.2 99 99-201 26-128 (148)
119 1p5q_A FKBP52, FK506-binding p 97.3 0.0036 1.2E-07 59.6 14.6 126 59-217 148-274 (336)
120 2r5s_A Uncharacterized protein 97.3 0.0015 5.2E-08 55.5 10.8 127 25-165 42-172 (176)
121 3q49_B STIP1 homology and U bo 97.3 0.0053 1.8E-07 49.0 13.4 100 99-201 7-106 (137)
122 1elw_A TPR1-domain of HOP; HOP 97.3 0.0039 1.3E-07 47.9 12.2 99 100-201 3-101 (118)
123 2e2e_A Formate-dependent nitri 97.3 0.0013 4.5E-08 55.7 9.8 122 33-167 20-145 (177)
124 4e6h_A MRNA 3'-END-processing 97.3 0.0052 1.8E-07 64.2 16.2 180 25-217 380-584 (679)
125 3rjv_A Putative SEL1 repeat pr 97.3 0.013 4.4E-07 51.4 16.6 157 40-217 3-172 (212)
126 4g1t_A Interferon-induced prot 97.3 0.086 3E-06 51.7 24.5 180 25-217 53-257 (472)
127 2kck_A TPR repeat; tetratricop 97.3 0.002 7E-08 49.1 10.0 99 101-201 6-106 (112)
128 2ifu_A Gamma-SNAP; membrane fu 97.3 0.0022 7.4E-08 60.1 12.0 158 25-195 78-255 (307)
129 1elr_A TPR2A-domain of HOP; HO 97.3 0.0024 8.1E-08 50.2 10.6 106 25-142 6-117 (131)
130 4gco_A Protein STI-1; structur 97.2 0.0055 1.9E-07 49.0 12.6 99 20-128 8-108 (126)
131 3gyz_A Chaperone protein IPGC; 97.2 0.0041 1.4E-07 51.8 12.1 126 25-173 11-138 (151)
132 3gyz_A Chaperone protein IPGC; 97.2 0.0035 1.2E-07 52.2 11.6 102 101-208 36-138 (151)
133 2pzi_A Probable serine/threoni 97.2 0.0014 4.9E-08 68.7 10.6 147 25-187 435-583 (681)
134 2vgx_A Chaperone SYCD; alterna 97.2 0.0048 1.6E-07 50.9 11.8 98 100-201 20-118 (148)
135 3upv_A Heat shock protein STI1 97.2 0.0071 2.4E-07 47.8 12.4 98 101-201 4-101 (126)
136 3qky_A Outer membrane assembly 97.1 0.088 3E-06 47.2 21.3 116 81-201 30-177 (261)
137 4gco_A Protein STI-1; structur 97.1 0.0089 3.1E-07 47.8 13.0 101 102-207 14-114 (126)
138 3sz7_A HSC70 cochaperone (SGT) 97.1 0.0063 2.1E-07 50.8 12.4 98 100-201 10-108 (164)
139 3u3w_A Transcriptional activat 97.1 0.018 6.3E-07 53.1 16.7 119 81-200 90-224 (293)
140 2xcb_A PCRH, regulatory protei 97.1 0.0059 2E-07 49.7 11.9 97 101-201 18-115 (142)
141 2vgx_A Chaperone SYCD; alterna 97.1 0.0087 3E-07 49.3 13.0 94 25-128 23-116 (148)
142 1elw_A TPR1-domain of HOP; HOP 97.1 0.017 5.7E-07 44.2 13.9 99 58-167 4-102 (118)
143 2xcb_A PCRH, regulatory protei 97.1 0.0094 3.2E-07 48.5 13.0 94 25-128 20-113 (142)
144 2kck_A TPR repeat; tetratricop 97.1 0.0076 2.6E-07 45.7 11.6 95 25-128 8-104 (112)
145 3gw4_A Uncharacterized protein 97.1 0.0045 1.6E-07 53.1 11.3 133 25-165 28-175 (203)
146 3ro3_A PINS homolog, G-protein 97.1 0.0041 1.4E-07 50.7 10.5 133 60-200 11-157 (164)
147 3ro3_A PINS homolog, G-protein 97.1 0.0036 1.2E-07 51.0 10.1 133 25-165 11-157 (164)
148 2xev_A YBGF; tetratricopeptide 97.1 0.022 7.7E-07 44.7 14.5 97 106-209 7-111 (129)
149 4gcn_A Protein STI-1; structur 97.0 0.013 4.5E-07 46.8 12.6 107 102-213 9-122 (127)
150 4g1t_A Interferon-induced prot 97.0 0.023 7.9E-07 55.9 17.1 153 36-200 226-400 (472)
151 3upv_A Heat shock protein STI1 97.0 0.019 6.5E-07 45.2 13.2 94 25-128 6-99 (126)
152 4e6h_A MRNA 3'-END-processing 96.9 0.0066 2.2E-07 63.5 13.0 166 25-202 345-534 (679)
153 3q49_B STIP1 homology and U bo 96.9 0.017 5.7E-07 46.0 12.9 100 56-166 7-106 (137)
154 2yhc_A BAMD, UPF0169 lipoprote 96.9 0.061 2.1E-06 47.3 17.6 130 81-217 19-194 (225)
155 3sz7_A HSC70 cochaperone (SGT) 96.9 0.029 1E-06 46.5 14.6 94 25-128 13-106 (164)
156 2dba_A Smooth muscle cell asso 96.9 0.067 2.3E-06 42.7 16.4 93 25-128 30-126 (148)
157 2fbn_A 70 kDa peptidylprolyl i 96.9 0.019 6.3E-07 49.5 13.6 154 33-198 14-183 (198)
158 3e4b_A ALGK; tetratricopeptide 96.9 0.3 1E-05 48.1 24.0 160 25-202 178-352 (452)
159 2qfc_A PLCR protein; TPR, HTH, 96.9 0.068 2.3E-06 49.1 18.1 146 63-217 80-246 (293)
160 3k9i_A BH0479 protein; putativ 96.9 0.0016 5.4E-08 51.2 5.9 82 81-165 5-89 (117)
161 2fbn_A 70 kDa peptidylprolyl i 96.8 0.02 6.7E-07 49.3 12.8 130 25-166 40-186 (198)
162 2c2l_A CHIP, carboxy terminus 96.7 0.016 5.3E-07 53.4 12.6 94 25-128 6-99 (281)
163 4f3v_A ESX-1 secretion system 96.7 0.011 3.7E-07 54.6 11.3 62 140-201 174-237 (282)
164 3k9i_A BH0479 protein; putativ 96.7 0.002 6.9E-08 50.6 5.6 103 113-217 2-107 (117)
165 3urz_A Uncharacterized protein 96.7 0.036 1.2E-06 48.3 14.1 135 29-180 60-198 (208)
166 4gcn_A Protein STI-1; structur 96.7 0.023 7.9E-07 45.3 11.8 103 60-176 10-120 (127)
167 1hxi_A PEX5, peroxisome target 96.6 0.017 5.8E-07 45.7 10.4 93 104-200 20-113 (121)
168 4b4t_Q 26S proteasome regulato 96.6 0.051 1.7E-06 52.7 15.7 162 31-200 12-203 (434)
169 4f3v_A ESX-1 secretion system 96.6 0.026 9E-07 52.0 12.6 98 105-206 106-205 (282)
170 1wao_1 Serine/threonine protei 96.5 0.007 2.4E-07 60.6 9.4 117 75-196 15-134 (477)
171 4b4t_Q 26S proteasome regulato 96.5 0.051 1.8E-06 52.6 14.9 168 25-200 57-244 (434)
172 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.037 1.3E-06 54.9 13.8 135 25-192 270-405 (457)
173 2c2l_A CHIP, carboxy terminus 96.4 0.046 1.6E-06 50.2 13.5 95 101-199 4-99 (281)
174 1klx_A Cysteine rich protein B 96.4 0.15 5.3E-06 41.1 15.3 115 77-203 6-128 (138)
175 1wao_1 Serine/threonine protei 96.4 0.014 4.8E-07 58.3 10.7 119 30-161 13-134 (477)
176 3n71_A Histone lysine methyltr 96.4 0.032 1.1E-06 55.9 13.0 121 81-201 324-464 (490)
177 1hxi_A PEX5, peroxisome target 96.3 0.048 1.6E-06 43.0 11.1 94 25-128 19-112 (121)
178 1klx_A Cysteine rich protein B 96.2 0.055 1.9E-06 43.8 11.2 113 36-168 8-128 (138)
179 2xev_A YBGF; tetratricopeptide 96.2 0.16 5.4E-06 39.6 13.8 90 31-128 10-103 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 95.9 0.09 3.1E-06 52.1 13.5 124 60-217 270-395 (457)
181 3rkv_A Putative peptidylprolyl 95.9 0.12 4E-06 42.6 12.2 102 102-207 12-130 (162)
182 3dra_A Protein farnesyltransfe 95.7 0.48 1.6E-05 44.1 16.8 165 37-213 124-299 (306)
183 3n71_A Histone lysine methyltr 95.6 0.094 3.2E-06 52.5 12.2 127 32-166 318-464 (490)
184 1ihg_A Cyclophilin 40; ppiase 95.6 0.1 3.4E-06 50.2 12.0 136 25-192 225-361 (370)
185 1ihg_A Cyclophilin 40; ppiase 95.4 0.14 4.6E-06 49.3 12.3 79 136-217 272-351 (370)
186 2kat_A Uncharacterized protein 95.3 0.16 5.5E-06 38.9 10.2 77 85-165 4-81 (115)
187 2uy1_A Cleavage stimulation fa 95.2 0.62 2.1E-05 46.5 16.8 154 25-198 215-380 (493)
188 1na3_A Designed protein CTPR2; 95.2 0.18 6.3E-06 36.3 9.9 79 101-182 9-87 (91)
189 2l6j_A TPR repeat-containing p 95.1 0.073 2.5E-06 40.2 7.7 65 100-166 3-67 (111)
190 3rkv_A Putative peptidylprolyl 95.1 0.44 1.5E-05 39.0 12.9 27 25-51 13-39 (162)
191 2if4_A ATFKBP42; FKBP-like, al 95.0 0.085 2.9E-06 49.9 9.4 145 25-201 181-328 (338)
192 2kat_A Uncharacterized protein 95.0 0.14 4.9E-06 39.3 9.1 79 119-201 3-82 (115)
193 3ma5_A Tetratricopeptide repea 94.7 0.13 4.4E-06 38.7 8.1 63 100-165 6-69 (100)
194 2hr2_A Hypothetical protein; a 94.6 0.29 9.8E-06 40.8 10.4 94 104-200 14-130 (159)
195 2l6j_A TPR repeat-containing p 94.6 0.13 4.3E-06 38.8 7.7 69 57-137 3-71 (111)
196 3e4b_A ALGK; tetratricopeptide 94.2 2 6.8E-05 42.1 17.4 155 25-203 215-389 (452)
197 2if4_A ATFKBP42; FKBP-like, al 93.9 0.17 5.7E-06 47.9 8.5 95 102-200 180-292 (338)
198 3mkq_A Coatomer beta'-subunit; 93.8 0.63 2.2E-05 49.0 13.8 96 81-198 667-762 (814)
199 3dra_A Protein farnesyltransfe 93.8 3.2 0.00011 38.4 17.0 186 25-222 69-271 (306)
200 1na3_A Designed protein CTPR2; 93.8 0.93 3.2E-05 32.3 10.9 61 25-94 11-71 (91)
201 3ma5_A Tetratricopeptide repea 93.4 0.32 1.1E-05 36.4 7.9 81 136-217 6-87 (100)
202 2uy1_A Cleavage stimulation fa 93.3 0.8 2.7E-05 45.7 12.7 123 59-200 287-412 (493)
203 3qwp_A SET and MYND domain-con 93.0 0.61 2.1E-05 45.7 11.1 93 107-199 293-398 (429)
204 3qww_A SET and MYND domain-con 92.9 0.53 1.8E-05 46.1 10.5 87 113-199 310-409 (433)
205 2hr2_A Hypothetical protein; a 92.9 1.2 4E-05 37.0 11.0 96 25-128 13-129 (159)
206 3qww_A SET and MYND domain-con 92.8 0.51 1.8E-05 46.3 10.3 84 81-164 313-409 (433)
207 3q7a_A Farnesyltransferase alp 92.3 4.1 0.00014 38.5 15.3 171 38-213 140-343 (349)
208 3qwp_A SET and MYND domain-con 92.2 0.8 2.7E-05 44.8 10.8 94 27-128 291-398 (429)
209 1zu2_A Mitochondrial import re 92.1 1 3.5E-05 37.3 9.7 98 78-181 14-133 (158)
210 1dce_A Protein (RAB geranylger 91.9 3.7 0.00013 41.6 15.7 175 36-217 42-236 (567)
211 3q7a_A Farnesyltransferase alp 91.7 8.8 0.0003 36.2 23.0 179 25-217 56-252 (349)
212 3ly7_A Transcriptional activat 90.9 3.8 0.00013 38.9 13.4 152 54-216 190-352 (372)
213 3mkq_B Coatomer subunit alpha; 90.6 5.7 0.0002 33.4 12.8 97 80-198 19-115 (177)
214 3mkq_A Coatomer beta'-subunit; 90.4 2.2 7.6E-05 44.7 12.8 85 56-164 679-763 (814)
215 2kc7_A BFR218_protein; tetratr 90.3 1.2 4.2E-05 32.5 7.9 53 110-165 9-63 (99)
216 3ly7_A Transcriptional activat 90.2 2.5 8.7E-05 40.2 11.6 144 25-176 196-347 (372)
217 1pc2_A Mitochondria fission pr 90.1 2.6 9E-05 34.6 10.1 50 78-128 10-62 (152)
218 3u64_A Protein TP_0956; tetrat 89.0 4.1 0.00014 37.3 11.5 130 57-199 153-296 (301)
219 2kc7_A BFR218_protein; tetratr 87.5 2.5 8.7E-05 30.7 7.9 58 143-201 6-64 (99)
220 3dss_A Geranylgeranyl transfer 87.1 16 0.00054 34.1 14.7 64 39-112 126-190 (331)
221 1zu2_A Mitochondrial import re 86.6 1.7 5.9E-05 36.0 6.9 122 34-166 13-147 (158)
222 1wy6_A Hypothetical protein ST 86.2 3.8 0.00013 33.0 8.2 147 25-203 7-156 (172)
223 1k1a_A B-cell lymphoma 3-encod 85.9 1.7 5.7E-05 37.9 7.0 147 28-193 11-168 (241)
224 1pc2_A Mitochondria fission pr 84.0 9.7 0.00033 31.1 10.1 96 117-217 14-114 (152)
225 3dss_A Geranylgeranyl transfer 83.5 29 0.00098 32.3 16.3 156 39-207 90-271 (331)
226 3mkq_B Coatomer subunit alpha; 81.8 22 0.00075 29.8 15.3 128 32-198 14-141 (177)
227 2ff4_A Probable regulatory pro 81.1 6.3 0.00021 37.8 9.3 118 99-217 110-255 (388)
228 2ff4_A Probable regulatory pro 79.7 5.9 0.0002 38.0 8.6 68 105-174 175-247 (388)
229 2v5f_A Prolyl 4-hydroxylase su 79.4 9.8 0.00034 28.3 8.2 64 102-165 6-74 (104)
230 3bee_A Putative YFRE protein; 78.9 17 0.00057 26.6 10.2 66 99-167 4-73 (93)
231 3u64_A Protein TP_0956; tetrat 78.6 9.7 0.00033 34.9 9.1 110 101-213 154-283 (301)
232 2v5f_A Prolyl 4-hydroxylase su 77.1 20 0.00068 26.5 9.7 71 138-210 6-82 (104)
233 3aji_A 26S proteasome non-ATPa 77.1 2.8 9.5E-05 36.2 5.0 141 28-192 8-156 (231)
234 2p58_C Putative type III secre 77.0 11 0.00037 28.4 7.2 49 147-201 50-98 (116)
235 1v54_E Cytochrome C oxidase po 77.0 18 0.00063 27.3 8.5 64 153-217 26-89 (109)
236 1wdy_A 2-5A-dependent ribonucl 75.9 4.8 0.00016 35.7 6.4 143 27-196 6-169 (285)
237 1v54_E Cytochrome C oxidase po 75.3 9.6 0.00033 28.8 6.6 59 85-145 29-87 (109)
238 2uwj_G Type III export protein 75.0 10 0.00035 28.5 6.6 50 147-202 49-98 (115)
239 4gns_B Protein CSD3, chitin bi 74.8 22 0.00074 37.3 11.6 53 109-164 345-398 (754)
240 1dce_A Protein (RAB geranylger 72.0 51 0.0017 33.1 13.5 126 81-212 44-183 (567)
241 3hra_A Ankyrin repeat family p 71.9 5.8 0.0002 33.2 5.7 158 30-207 9-173 (201)
242 1wy6_A Hypothetical protein ST 70.4 41 0.0014 27.1 14.4 133 81-238 22-154 (172)
243 4gns_B Protein CSD3, chitin bi 68.9 65 0.0022 33.6 13.6 129 60-198 250-397 (754)
244 4h7y_A Dual specificity protei 66.0 53 0.0018 26.8 10.2 114 100-217 12-138 (161)
245 3twr_A Tankyrase-2; ankyrin re 65.7 8 0.00027 31.2 5.0 16 31-46 13-28 (165)
246 2y69_E Cytochrome C oxidase su 63.8 46 0.0016 26.6 8.5 62 155-217 71-132 (152)
247 1nzn_A CGI-135 protein, fissio 62.4 36 0.0012 26.7 7.9 83 81-166 16-103 (126)
248 3bee_A Putative YFRE protein; 61.9 43 0.0015 24.3 10.7 62 82-147 25-86 (93)
249 2dzn_A Probable 26S proteasome 61.9 6.7 0.00023 33.5 4.1 138 29-190 5-155 (228)
250 2y69_E Cytochrome C oxidase su 61.5 24 0.00084 28.1 6.6 38 91-128 78-115 (152)
251 3ix7_A Uncharacterized protein 60.0 11 0.00039 30.0 4.6 47 379-425 63-112 (134)
252 3eu9_A Huntingtin-interacting 55.9 9.5 0.00033 32.7 4.0 15 32-46 15-29 (240)
253 4h7y_A Dual specificity protei 55.8 24 0.00081 28.9 5.8 27 25-51 15-47 (161)
254 2nsz_A Programmed cell death p 55.5 37 0.0013 26.6 7.1 67 104-172 10-78 (129)
255 3f6q_A Integrin-linked protein 55.4 20 0.00067 29.3 5.8 14 34-47 13-26 (179)
256 3v30_A DNA-binding protein rfx 53.9 15 0.00051 29.7 4.7 147 30-199 6-159 (172)
257 2rfa_A Transient receptor pote 53.3 21 0.0007 30.5 5.8 151 29-198 40-220 (232)
258 1awc_B Protein (GA binding pro 52.9 37 0.0013 26.7 7.0 120 27-171 3-127 (153)
259 2nsz_A Programmed cell death p 51.8 59 0.002 25.4 7.7 71 139-210 9-81 (129)
260 3v31_A Ankyrin repeat family A 51.8 50 0.0017 26.2 7.7 147 30-200 7-160 (167)
261 1nzn_A CGI-135 protein, fissio 50.8 87 0.003 24.5 8.5 98 115-217 15-117 (126)
262 3hra_A Ankyrin repeat family p 48.8 24 0.00082 29.2 5.3 146 29-193 42-196 (201)
263 2rfa_A Transient receptor pote 48.5 24 0.00082 30.1 5.4 151 29-205 6-184 (232)
264 2ion_A PDCD4, programmed cell 47.8 33 0.0011 27.9 5.7 69 103-173 11-81 (152)
265 1bd8_A P19INK4D CDK4/6 inhibit 46.3 9.8 0.00034 30.3 2.3 144 28-196 4-154 (156)
266 4b4t_R RPN7, 26S proteasome re 46.3 1.4E+02 0.0047 28.6 10.9 101 103-206 133-242 (429)
267 4fhn_B Nucleoporin NUP120; pro 45.9 1E+02 0.0036 33.8 11.1 113 32-156 851-990 (1139)
268 2p58_C Putative type III secre 45.0 97 0.0033 23.3 7.5 78 81-167 22-99 (116)
269 2d2s_A Exocyst complex compone 45.0 1.4E+02 0.0049 26.0 9.8 91 107-200 24-119 (235)
270 3ljn_A Hypothetical protein; a 44.7 25 0.00085 32.6 5.2 150 23-196 17-194 (364)
271 3eiq_C Programmed cell death p 44.4 2E+02 0.0069 26.9 13.9 78 139-217 219-298 (358)
272 2ion_A PDCD4, programmed cell 44.2 51 0.0018 26.7 6.3 71 139-210 11-83 (152)
273 3t8k_A Uncharacterized protein 44.1 76 0.0026 26.2 7.8 159 31-203 11-182 (186)
274 2uwj_G Type III export protein 42.5 94 0.0032 23.3 6.7 78 81-167 21-98 (115)
275 2etb_A Transient receptor pote 41.2 5.2 0.00018 35.2 -0.2 118 28-159 4-155 (256)
276 1wdy_A 2-5A-dependent ribonucl 41.2 29 0.00099 30.3 4.9 105 86-195 118-239 (285)
277 4b4t_P 26S proteasome regulato 38.2 2.8E+02 0.0095 26.6 14.7 168 25-200 58-246 (445)
278 4fhn_B Nucleoporin NUP120; pro 37.6 2.1E+02 0.007 31.5 11.8 114 100-217 841-981 (1139)
279 2f8y_A Notch homolog 1, transl 37.5 50 0.0017 27.7 5.7 140 28-194 27-177 (223)
280 3eiq_C Programmed cell death p 37.2 63 0.0022 30.3 6.6 77 103-181 219-297 (358)
281 4g8k_A 2-5A-dependent ribonucl 37.1 67 0.0023 29.1 6.9 106 86-207 219-329 (337)
282 3utm_A Tankyrase-1; tankyrase, 36.8 38 0.0013 30.7 5.1 119 27-171 25-151 (351)
283 3twr_A Tankyrase-2; ankyrin re 36.6 76 0.0026 25.0 6.4 88 106-206 44-135 (165)
284 3ffl_A Anaphase-promoting comp 35.8 42 0.0014 27.8 4.4 70 51-128 11-90 (167)
285 3eu9_A Huntingtin-interacting 35.3 73 0.0025 26.7 6.4 110 86-206 22-136 (240)
286 3b7b_A Euchromatic histone-lys 34.6 24 0.00082 30.2 3.1 147 29-206 47-204 (237)
287 4b4t_P 26S proteasome regulato 34.6 3.2E+02 0.011 26.2 16.2 151 37-200 30-205 (445)
288 1zbp_A Hypothetical protein VP 34.6 71 0.0024 28.7 6.1 54 146-200 6-59 (273)
289 2rfm_A Putative ankyrin repeat 33.9 49 0.0017 27.1 4.9 19 30-48 39-57 (192)
290 2d2s_A Exocyst complex compone 33.5 2.2E+02 0.0076 24.7 9.2 91 27-128 22-118 (235)
291 3kea_A K1L; tropism, ANK repea 33.0 1.3E+02 0.0044 26.6 7.9 142 29-197 34-183 (285)
292 1v96_A Hypothetical protein PH 32.9 21 0.00071 28.4 2.2 43 396-438 94-141 (149)
293 3ygs_P Procaspase 9; apoptosis 32.0 1.5E+02 0.0051 21.7 7.3 39 81-123 52-90 (97)
294 3esl_A Checkpoint serine/threo 31.5 1.2E+02 0.004 25.9 6.7 45 84-128 97-142 (202)
295 2y1l_E Darpin-8.4; hydrolase-i 31.4 60 0.0021 25.9 4.9 140 25-190 13-161 (169)
296 3ljn_A Hypothetical protein; a 31.4 1.2E+02 0.0041 27.7 7.7 99 55-171 15-115 (364)
297 3t8k_A Uncharacterized protein 30.8 82 0.0028 26.0 5.8 135 28-170 40-184 (186)
298 2jab_A H10-2-G3; HER2, darpin, 30.7 96 0.0033 23.6 5.9 112 57-192 11-130 (136)
299 2xai_A ASB-9, ankyrin repeat a 30.5 53 0.0018 28.7 4.7 139 29-195 6-154 (261)
300 3ffl_A Anaphase-promoting comp 30.4 1.6E+02 0.0056 24.2 7.2 106 95-201 12-151 (167)
301 4a1g_A Mitotic checkpoint seri 30.3 2.2E+02 0.0074 23.0 9.2 50 120-170 84-134 (152)
302 3esl_A Checkpoint serine/threo 29.7 2.6E+02 0.0089 23.7 9.9 54 153-206 95-149 (202)
303 4b4t_R RPN7, 26S proteasome re 29.2 1.3E+02 0.0046 28.7 7.7 65 137-201 131-197 (429)
304 1ug3_A EIF4GI, eukaryotic prot 28.9 1.6E+02 0.0054 27.2 7.9 67 25-99 13-79 (339)
305 2jab_A H10-2-G3; HER2, darpin, 28.5 76 0.0026 24.2 4.9 112 25-159 13-132 (136)
306 3aji_A 26S proteasome non-ATPa 27.8 1.1E+02 0.0036 25.7 6.2 148 29-206 43-199 (231)
307 2wvi_A Mitotic checkpoint seri 27.5 1.9E+02 0.0064 23.7 7.1 31 140-170 99-129 (164)
308 1k1a_A B-cell lymphoma 3-encod 27.2 1.2E+02 0.0042 25.4 6.5 86 107-197 12-101 (241)
309 2keb_A DNA polymerase subunit 27.1 1.9E+02 0.0066 21.4 6.9 61 41-107 27-88 (101)
310 4gpm_A Engineered protein OR26 27.0 1.5E+02 0.0052 23.9 6.7 110 33-170 11-129 (169)
311 3txn_A 26S proteasome regulato 26.1 4.2E+02 0.014 25.0 16.5 170 25-199 21-208 (394)
312 3l6a_A Eukaryotic translation 25.9 2E+02 0.0068 27.0 8.0 80 25-112 14-94 (364)
313 1s70_B 130 kDa myosin-binding 25.7 1.1E+02 0.0038 26.8 6.1 83 25-125 39-127 (299)
314 2zu6_B Programmed cell death p 25.3 3.8E+02 0.013 24.3 13.3 69 140-209 169-239 (307)
315 3b7b_A Euchromatic histone-lys 25.0 57 0.002 27.6 3.9 148 29-206 14-171 (237)
316 3kea_A K1L; tropism, ANK repea 24.7 2.6E+02 0.0089 24.5 8.4 153 29-208 65-224 (285)
317 3jxi_A Vanilloid receptor-rela 24.7 89 0.003 26.9 5.1 117 29-159 8-159 (260)
318 3d9h_A CDNA FLJ77766, highly s 24.4 57 0.002 29.0 3.8 138 28-193 61-208 (285)
319 1yyh_A HN1;, notch 1, ankyrin 24.3 36 0.0012 29.6 2.4 100 86-191 70-173 (253)
320 4gpm_A Engineered protein OR26 24.1 1.7E+02 0.0059 23.5 6.5 115 63-206 7-130 (169)
321 2y1l_E Darpin-8.4; hydrolase-i 23.1 1.3E+02 0.0045 23.7 5.6 124 55-205 9-139 (169)
322 3o48_A Mitochondria fission 1 23.0 2.2E+02 0.0074 22.5 6.4 21 145-165 86-106 (134)
323 3d9h_A CDNA FLJ77766, highly s 22.9 53 0.0018 29.2 3.3 155 25-206 14-184 (285)
324 2zu6_B Programmed cell death p 22.9 1.2E+02 0.0042 27.6 5.8 72 103-176 168-241 (307)
325 1y8m_A FIS1; mitochondria, unk 22.5 2.1E+02 0.0072 22.9 6.2 66 98-166 36-106 (144)
326 4fke_A Aminopeptidase N; zinc 22.4 7.1E+02 0.024 26.4 12.8 124 62-197 690-818 (909)
327 1o4w_A PIN (PILT N-terminus) d 22.0 1.2E+02 0.0041 24.0 4.9 24 393-418 95-118 (147)
328 2aja_A Ankyrin repeat family p 21.9 4.5E+02 0.015 24.4 9.8 104 86-196 105-220 (376)
329 4aez_C MAD3, mitotic spindle c 21.9 1.4E+02 0.0049 25.8 5.6 70 98-171 114-184 (223)
330 3lpz_A GET4 (YOR164C homolog); 21.6 4.8E+02 0.016 24.0 18.0 166 25-217 37-213 (336)
331 1n0r_A 4ANK, 4 ankyrin repeats 21.2 1.2E+02 0.0043 22.0 4.8 11 32-42 8-18 (126)
332 3o48_A Mitochondria fission 1 21.0 1.8E+02 0.0062 22.9 5.5 54 81-137 58-111 (134)
333 1y8m_A FIS1; mitochondria, unk 20.8 3.2E+02 0.011 21.8 7.5 70 146-217 48-120 (144)
334 2aja_A Ankyrin repeat family p 20.5 2.1E+02 0.0071 26.8 7.0 111 28-161 94-220 (376)
335 4g8k_A 2-5A-dependent ribonucl 20.5 2.1E+02 0.007 25.7 6.9 43 26-72 25-71 (337)
336 2fe3_A Peroxide operon regulat 20.2 2.5E+02 0.0086 22.0 6.6 63 90-154 11-73 (145)
337 2rg8_A Programmed cell death p 20.2 1.4E+02 0.0049 24.3 5.1 60 25-93 12-72 (165)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.7e-95 Score=741.37 Aligned_cols=435 Identities=48% Similarity=0.869 Sum_probs=399.4
Q ss_pred CCCCCCCCCccccccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CCCCCchhh
Q 013497 3 NTTSTNPSKPNKKRKTNPNPETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA-TDPSSKDSA 81 (442)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~-~~~~~~~~~ 81 (442)
+++..++.++.+++.....|+..++.+|++|||.|++++|+++|++|++.|++||.+|||+||++|++.+ .....+.+.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3455677777777777888888999999999999999999999999999999999999999999998876 345567789
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 013497 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEE 161 (442)
Q Consensus 82 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 161 (442)
+++|.++|++|.+.|+.||++|||+||++|++.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhcc---ccCCCcccchhhHHHHHHh
Q 013497 162 HMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG---QKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 162 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~---~~~~~~~~~~~~~~~a~~~ 238 (442)
+|.+.|+.||..||++||++|++.|+.++|.++|++|++.++.|+..||++|+.||++ ...+...|+...+.+++..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~ 244 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 244 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhc
Confidence 9999999999999999999999999999999999999999999999999999999976 4456778999999999999
Q ss_pred cCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcc
Q 013497 239 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYE 318 (442)
Q Consensus 239 ~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d 318 (442)
.|++|||.+|.+.+.|.+..+.|...|.|++|+.+|+.++++++|+..|...|.+++..++..+.++.|++|+++++|||
T Consensus 245 ~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d 324 (501)
T 4g26_A 245 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFD 324 (501)
T ss_dssp HTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTSCCCS
T ss_pred cCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccchhccccccCCCCcChhhHHHHHHHHHHhcC-CCccEEEccCccccC-CCCChhhHHHHHHHHhcCeEEeCCCC
Q 013497 319 AIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSG-NKWPLVILHNKRLRS-LWENPSHRNLVEEWNEKGVLYMTPHG 396 (442)
Q Consensus 319 ~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~-~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (442)
+||||+||||++++ .|++.+++.|++.+.+..+ +++||||||++|+.+ +...+++++++++|++++.+|+||++
T Consensus 325 ~vIDG~NV~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 400 (501)
T 4g26_A 325 AVIDGANMGLVNQR----SFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPG 400 (501)
T ss_dssp EEEEHHHHHHTTCS----SCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTSGGGSSHHHHHHHHHHHHTTCEEEECTT
T ss_pred hhhccchhhccccc----cccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcccccCCHHHHHHHHHHHhcCeEEeCCCC
Confidence 99999999999988 6789999999999998655 788999999999876 56667899999999999999999999
Q ss_pred CCccHHHHHHHHhcCcEEEecCccccchhhccccchhhhhhhhcCC
Q 013497 397 SNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQT 442 (442)
Q Consensus 397 ~~DD~~~l~aa~~~~~~~vsnD~~rdh~~~~~~~~~f~~W~~~hq~ 442 (442)
|+|||||||||++++|+|||||+||||+|+|+++++|+|||++|||
T Consensus 401 s~DD~~~lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~ 446 (501)
T 4g26_A 401 SNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQV 446 (501)
T ss_dssp CCHHHHHHHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEE
T ss_pred CCchHHHHHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeE
Confidence 9999999999999999999999999999999999999999999996
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.98 E-value=8.1e-32 Score=274.34 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 013497 40 TTAISLYESAHSQNLRLSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND-- 116 (442)
Q Consensus 40 ~~A~~lf~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-- 116 (442)
..+..+.+++++.++.+.+ ..++.+|.+|++.| ++++|+++|++|.+.|+.||++|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G--------~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~ 78 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG--------DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT 78 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSC--------CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCS
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchh
Confidence 4566777888888876654 46899999999998 999999999999999999999999999999998765
Q ss_pred -------HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 013497 117 -------GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVE 189 (442)
Q Consensus 117 -------~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~ 189 (442)
+++|.++|++|. ..|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|+++
T Consensus 79 ~~~~~~~l~~A~~lf~~M~-~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~ 157 (501)
T 4g26_A 79 ESSPNPGLSRGFDIFKQMI-VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD 157 (501)
T ss_dssp SSSCCHHHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence 688999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCc
Q 013497 190 KVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCS 269 (442)
Q Consensus 190 ~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~ 269 (442)
+|.++|++|.+.|+.||..||++||.+| ++. +.+++|...+. .|...|.+|
T Consensus 158 ~A~~l~~~M~~~G~~Pd~~ty~~Li~~~--~~~-------g~~d~A~~ll~-------------------~Mr~~g~~p- 208 (501)
T 4g26_A 158 KAYEVDAHMVESEVVPEEPELAALLKVS--MDT-------KNADKVYKTLQ-------------------RLRDLVRQV- 208 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHH--HHT-------TCHHHHHHHHH-------------------HHHHHTSSB-
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH--hhC-------CCHHHHHHHHH-------------------HHHHhCCCc-
Confidence 9999999999999999999999999999 877 66777777654 788889999
Q ss_pred CCCcccccCCCHHHHHHHHHHHHHHhHHHHHH------hhHHHHHHHHHHc
Q 013497 270 CGDQLACVDIDDAETERFAQSVAALAMEREVK------ANFSEFQDWLEKN 314 (442)
Q Consensus 270 c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~------~a~~~F~~m~~~~ 314 (442)
+..||+.++..++..+... ++..+-..+...+
T Consensus 209 -------------s~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g 246 (501)
T 4g26_A 209 -------------SKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGG 246 (501)
T ss_dssp -------------CHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhccC
Confidence 8999999999998876544 3344444455443
No 3
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.4e-22 Score=177.56 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=101.2
Q ss_pred CcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCCc-cEEEccCccccC--CCCChhhHHHHHHHHhcCeEEe
Q 013497 316 NYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKW-PLVILHNKRLRS--LWENPSHRNLVEEWNEKGVLYM 392 (442)
Q Consensus 316 ~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~~-~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 392 (442)
.--+||||+|||++.++ ...|++.+|..+|++|.++ |.. ++|+++..+... +..+..++++|++|.+++.+++
T Consensus 24 lR~IVIDGsNVA~~~g~--~~~Fs~rgI~~aV~yF~~R--Gh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~ 99 (223)
T 3v33_A 24 LRPVVIDGSNVAMSHGN--KEVFSCRGILLAVNWFLER--GHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (223)
T ss_dssp BCCEEEEHHHHHHHSSS--TTSEEHHHHHHHHHHHHTT--TCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEE
T ss_pred CCeEEEeCHHHHhhhCC--CCCcCHHHHHHHHHHHHHc--CCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEE
Confidence 45689999999999877 3578999999999999999 445 556677665542 3444567899999999999999
Q ss_pred CCCC--------CCccHHHHHHHHhcCcEEEecCccccchhhccccchhhhhhhhcCC
Q 013497 393 TPHG--------SNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQT 442 (442)
Q Consensus 393 ~~~~--------~~DD~~~l~aa~~~~~~~vsnD~~rdh~~~~~~~~~f~~W~~~hq~ 442 (442)
||++ |+||+|||++|.+.+++|||||+||||..+ ...|.+|.+.|+|
T Consensus 100 TPs~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~e---~p~~k~~Ie~rlI 154 (223)
T 3v33_A 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLL 154 (223)
T ss_dssp ECEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHTT---CHHHHHHHHHHEE
T ss_pred CCCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCee
Confidence 9999 899999999999999999999999999852 3468888899975
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=212.14 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAH---SQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~---~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
|||+||++|||.|++++|.++|++|. ..|+.||++|||+||++|.+.| ++++|.++|++|.+.|+.||+
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G--------~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG--------AFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCC--------CHHHHHHHHHHHHHcCCCCcH
Confidence 99999999999999999999998876 4589999999999999888888 899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHH
Q 013497 102 ASVTSVARLAASKNDG-DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE------QQE 174 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~-~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~------~~t 174 (442)
+|||+||+++|+.|+. ++|.++|++|. +.|+.||.+||+++|.++.+.+-++.+ +++ ..++.|+ ..|
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv-~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAV----HKV-KPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHH----GGG-CCCCCCCCCCCCCCCC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHH----HHh-CcccCCCCCCcccccc
Confidence 9999999999999985 78999999999 999999999999999888776443333 333 3355554 455
Q ss_pred HHHHHHHHHhcC
Q 013497 175 IAALLKVSAETG 186 (442)
Q Consensus 175 y~~li~~~~~~g 186 (442)
...|.+.|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 566777777655
No 5
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=99.85 E-value=5.1e-22 Score=170.39 Aligned_cols=122 Identities=21% Similarity=0.238 Sum_probs=100.2
Q ss_pred CCcceEEeccchhccccccCCCCcChhhHHHHHHHHHHhcCCCccEEEccCccccC--CCCChhhHHHHHHHHhcCeEEe
Q 013497 315 ANYEAIVDGANIGLYQQNFTEGGFSVPQLDAVVKKLYERSGNKWPLVILHNKRLRS--LWENPSHRNLVEEWNEKGVLYM 392 (442)
Q Consensus 315 ~~~d~vIdg~Nv~~~~~~~~~~~~~~~~~~~vv~~l~~~~~~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 392 (442)
..--+||||.|||+++++ ...|++.+|..+|++|.++++ +.++|+++..+... +..+..++++|++|.+.+.+++
T Consensus 23 ~lR~IVIDGsNVA~~~g~--~~~Fs~rgI~~aV~yf~~rGh-~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~ 99 (185)
T 3v32_B 23 DLRPVVIDGSNVAMSHGN--KEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF 99 (185)
T ss_dssp CBCCEEEEHHHHHHHHTT--TTSEEHHHHHHHHHHHHHTTC-CCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEE
T ss_pred CCCeEEEeCHHHHhhhCC--CCCcCHHHHHHHHHHHHHcCC-CceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEE
Confidence 355789999999999877 357899999999999999944 33556666665442 3445677899999999999999
Q ss_pred CCCC--------CCccHHHHHHHHhcCcEEEecCccccchhhccccchhhhhhhhcCC
Q 013497 393 TPHG--------SNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGSNFFLKWKERHQT 442 (442)
Q Consensus 393 ~~~~--------~~DD~~~l~aa~~~~~~~vsnD~~rdh~~~~~~~~~f~~W~~~hq~ 442 (442)
||.+ |+||+|||++|...+++|||||+||||..+ ...+.+|.+.|+|
T Consensus 100 TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli 154 (185)
T 3v32_B 100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLL 154 (185)
T ss_dssp ECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEE
T ss_pred CCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcc
Confidence 9999 899999999999999999999999999763 2356666788874
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=206.77 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS---NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV 133 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 133 (442)
-..|||+||++|.+.| ++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|+ +.|+
T Consensus 126 ~~~TynaLIdglcK~G--------~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~G~ 196 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTD--------QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DAGL 196 (1134)
T ss_dssp HHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCC
Confidence 4579999999988888 99999999988864 5899999999999999999999999999999999 9999
Q ss_pred CCCcccHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC------
Q 013497 134 VPRLRTYDPALFCFCENLEA-EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN------ 206 (442)
Q Consensus 134 ~p~~~ty~~li~~~~~~g~~-~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~------ 206 (442)
.||++|||+||++||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+ +++.++++ .-+..|+
T Consensus 197 ~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~ 271 (1134)
T 3spa_A 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPP 271 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCC
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCccc
Confidence 99999999999999999984 789999999999999999999999998876653 34444444 3445554
Q ss_pred hHHHHHHHHHh
Q 013497 207 EETGKIIEDWF 217 (442)
Q Consensus 207 ~~t~~~li~~~ 217 (442)
..|...|.+.|
T Consensus 272 ~~t~~LL~dl~ 282 (1134)
T 3spa_A 272 VNTSKLLRDVY 282 (1134)
T ss_dssp CCCCTTTHHHH
T ss_pred ccchHHHHHHH
Confidence 44556666767
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.73 E-value=1.5e-16 Score=164.72 Aligned_cols=276 Identities=8% Similarity=-0.036 Sum_probs=208.8
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 22 PET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 22 p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
++. +|+.++.+|.+.|++++|+++|++|.+.+. .+..+|+.++.++...| ++++|.++|++|.+.. +.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESG--------EKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHT--------CHHHHHHHHHHHHHHC-TTS
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHhhC-ccc
Confidence 455 999999999999999999999999987652 36788999999888887 8999999999998543 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..+|+.++.+|.+.|++++|.++|+++. ... ..+..+|+.++.+|++.|++++|.++|++|.+.+ ..+..+|+.++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSS-TMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 8999999999999999999999999998 431 2356799999999999999999999999998764 347889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeec
Q 013497 181 VSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGS 260 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~ 260 (442)
+|.+.|++++|.++|+++.+.. ..++.+|..+...| ... +..++|...+..... .
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~--~~~-------g~~~~A~~~~~~~~~---------------~ 504 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA--FNK-------SDMQTAINHFQNALL---------------L 504 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHT-------TCHHHHHHHHHHHHH---------------H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH--HHh-------CCHHHHHHHHHHHHH---------------h
Confidence 9999999999999999998753 34678899999999 666 344444443220000 0
Q ss_pred cCCCCCCCcCCCcccccCCCHHH-HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccccCCCCcC
Q 013497 261 VDESGKCCSCGDQLACVDIDDAE-TERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQNFTEGGFS 339 (442)
Q Consensus 261 ~~~~g~c~~c~~~l~~~~l~~~d-~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~~~~~~~~ 339 (442)
....+.-| .+ ...|..+...|...|+.++|.+.|+++++..+....+...+-..|... | .
T Consensus 505 ~~~~~~~p-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g--~ 565 (597)
T 2xpi_A 505 VKKTQSNE-------------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK----K--I 565 (597)
T ss_dssp HHHSCCCS-------------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT----T--C
T ss_pred hhccccch-------------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----C--C
Confidence 00001122 12 678999999999999999999999999987643221111111112221 2 3
Q ss_pred hhhHHHHHHHHHHhc
Q 013497 340 VPQLDAVVKKLYERS 354 (442)
Q Consensus 340 ~~~~~~vv~~l~~~~ 354 (442)
++.+...++.+.+..
T Consensus 566 ~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 566 PGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 677777777776653
No 8
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.3e-15 Score=157.66 Aligned_cols=235 Identities=9% Similarity=-0.036 Sum_probs=197.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+|+.++.+|.+.|+.++|..+|++|.+.. +.+..+|+.+..+|...| ++++|.++|++|.+.. +.+..+|
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~-~~~~~~~ 410 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN--------KISEARRYFSKSSTMD-PQFGPAW 410 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhC-CCCHHHH
Confidence 89999999999999999999999998543 457889999999998888 9999999999998753 3468899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
+.++.+|++.|++++|.++|++|. ..+ ..+..+|+.++.+|.+.|++++|.++|++|.+.. ..+..+|+.++..|.+
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAA-RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFN 487 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 999999999999999999999998 542 4578999999999999999999999999998764 3378999999999999
Q ss_pred cCCHHHHHHHHHHHHhc----cCCCC--hHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEee
Q 013497 185 TGRVEKVYQYLQKLRST----VRCVN--EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKR 258 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~----~~~p~--~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~ 258 (442)
.|++++|.++|+++.+. +..|+ ..++..+...| .+. +..++|...+.
T Consensus 488 ~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~--~~~-------g~~~~A~~~~~------------------ 540 (597)
T 2xpi_A 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY--RKL-------KMYDAAIDALN------------------ 540 (597)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH--HHT-------TCHHHHHHHHH------------------
T ss_pred hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH--HHh-------cCHHHHHHHHH------------------
Confidence 99999999999999876 66787 67999999999 665 44455544321
Q ss_pred eccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 259 GSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 259 ~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.+ +.+.|.+...|..+...|...|+.++|.+.|++.++..+
T Consensus 541 -~~---------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 541 -QG---------------LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp -HH---------------HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -HH---------------HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 00 001122567888899999999999999999999998654
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=1.5e-10 Score=112.99 Aligned_cols=176 Identities=11% Similarity=0.004 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHH-FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~t-y~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
+|..+...+.+.|++++|++.|.++.+. .|+... +..+-.++...| ++++|.++|+++.+.. +-+..+
T Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~-p~~~~~ 171 (388)
T 1w3b_A 103 GYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALG--------RLEEAKACYLKAIETQ-PNFAVA 171 (388)
T ss_dssp HHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTS--------CHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhC-CCCHHH
Confidence 7888888888888888888888887754 344433 333334666666 7888888887776643 224677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
|+.+...|.+.|++++|...|+++. .. .|+ ...|..+-..+...|++++|...|+...... +.+..++..+...+
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAV-TL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHH
Confidence 7777777778888888877777776 32 232 3445555556666666666666666554432 11345555666666
Q ss_pred HhcCCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWF 217 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p-~~~t~~~li~~~ 217 (442)
.+.|++++|.+.|+++... .| ++.++..+...+
T Consensus 248 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANAL 281 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 6666666666666665543 22 234455555555
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.32 E-value=6e-10 Score=110.61 Aligned_cols=251 Identities=9% Similarity=0.007 Sum_probs=181.3
Q ss_pred CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 19 NPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 19 ~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
...|+. .|..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...+ ++++|.+.|+++.+.+
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG--------KSKAALPDLTKVIQLK 90 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC
Confidence 344555 89999999999999999999999988652 346788888888888888 8999999999998865
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc----ccHHHHHH------------HHHHcCCHHHHHHHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL----RTYDPALF------------CFCENLEAEKAYEVE 160 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~ty~~li~------------~~~~~g~~~~A~~l~ 160 (442)
. .+..++..+..+|.+.|++++|...|+++. .. .|+. .++..++. .|.+.|++++|.++|
T Consensus 91 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 91 M-DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3 368899999999999999999999999998 43 4544 55555544 489999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcC
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNG 240 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (442)
+.+.+.. +.+..++..+..+|.+.|++++|.++|+++.... ..++.++..+...+ ... +...+|+..+.
T Consensus 167 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~--~~~-------g~~~~A~~~~~ 235 (450)
T 2y4t_A 167 DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY--YQL-------GDHELSLSEVR 235 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH--HHT-------TCHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH--HHc-------CCHHHHHHHHH
Confidence 9998753 3377889999999999999999999999997652 33567888888888 555 33444443321
Q ss_pred CcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 241 GGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 241 ~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
. .+......+.+...+. .-.....+..+...+...|+.++|++.|++++...+
T Consensus 236 ~------------------~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 236 E------------------CLKLDQDHKRCFAHYK----QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp H------------------HHHHCTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred H------------------HHHhCCChHHHHHHHH----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 0 0000000000000000 000111223335667888999999999999998654
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=2.1e-10 Score=111.90 Aligned_cols=196 Identities=11% Similarity=-0.026 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...| ++++|.+.|+++.+... -+..++
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~~~ 138 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAG--------DMEGAVQAYVSALQYNP-DLYCVR 138 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHS--------CSSHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CcHHHH
Confidence 99999999999999999999999988642 234567888888888877 89999999999987542 245667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
..+-..+...|++++|.+.|+++. .. .| +..+|+.+...|.+.|++++|.+.|+++..... .+...|..+-..+.
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAI-ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 788888999999999999999998 43 45 457899999999999999999999999987642 25678889999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
..|++++|...+.+.... .|+ ..++..+...+ ...|...-....+++++..
T Consensus 215 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~ 266 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSL--SPNHAVVHGNLACVY--YEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp TTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhh
Confidence 999999999999988764 354 56777787777 5555444444556666654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=8e-10 Score=109.72 Aligned_cols=236 Identities=10% Similarity=0.022 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-H--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN-E-- 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~-- 101 (442)
.|..+...|.+.|++++|+..|+++.+.+ +.+..+|..+..++...| ++++|.++|+++.+.. |+ .
T Consensus 62 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~--~~~~~~ 130 (450)
T 2y4t_A 62 AYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG--------KLDEAEDDFKKVLKSN--PSENEE 130 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTSC--CCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC--CCChhh
Confidence 89999999999999999999999998764 235778888888888888 9999999999998754 43 3
Q ss_pred -HHHHHHHHH------------HHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 102 -ASVTSVARL------------AASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 102 -~ty~~li~~------------~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
.++..++.. +.+.|++++|...|+++. ... ..+..++..+...|.+.|++++|.++|+.+....
T Consensus 131 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 131 KEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 566666444 899999999999999998 432 3467889999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHH-HHHH------------HHHhccccCCCcccchhhHHHH
Q 013497 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEET-GKII------------EDWFSGQKVNGVSCDLGLVKNA 235 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t-~~~l------------i~~~~~~~~~~~~~~~~~~~~a 235 (442)
+.+..+|..+...|...|+.++|...|+++... .|+... +..+ ...+ ... +...+|
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------g~~~~A 276 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEEL--IRD-------GRYTDA 276 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH--HHH-------TCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHH--HHc-------CCHHHH
Confidence 346889999999999999999999999999854 455443 3332 3333 222 444444
Q ss_pred HHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 236 VLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
...+.. .+......+ ..-...+..+...+...|+.++|+..|++.+...+
T Consensus 277 ~~~~~~------------------~l~~~p~~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 277 TSKYES------------------VMKTEPSIA------------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHH------------------HHHHCCSSH------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHH------------------HHhcCCcch------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 443210 000000000 00134566666778888999999999999887654
No 13
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.21 E-value=1.4e-11 Score=121.02 Aligned_cols=220 Identities=10% Similarity=-0.024 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 24 TNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 24 ~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.+|..|..++.+.|++++|++.|.+. +|..+|..++..|...| ++++|...++...+. .+++.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g--------~~EeAi~yl~~ark~--~~~~~i 96 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG--------NWEELVKYLQMARKK--ARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHh--Cccchh
Confidence 39999999999999999999999753 57789999999887777 999999977766653 566889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
.+.++.+|++.|+++++.++++ .|+..+|+.+-..|...|++++|...|..+ ..|..|..++.
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 9999999999999999888773 367789999999999999999999999987 36999999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCC
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDE 263 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~ 263 (442)
+.|++++|.+.+.+. .++.||..++.+| ... +.++.|..
T Consensus 160 ~Lg~yq~AVea~~KA------~~~~~Wk~v~~aC--v~~-------~ef~lA~~-------------------------- 198 (449)
T 1b89_A 160 HLGEYQAAVDGARKA------NSTRTWKEVCFAC--VDG-------KEFRLAQM-------------------------- 198 (449)
T ss_dssp TTTCHHHHHHHHHHH------TCHHHHHHHHHHH--HHT-------TCHHHHHH--------------------------
T ss_pred HhccHHHHHHHHHHc------CCchhHHHHHHHH--HHc-------CcHHHHHH--------------------------
Confidence 999999999999988 3789999999999 655 55555533
Q ss_pred CCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhcc
Q 013497 264 SGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLY 329 (442)
Q Consensus 264 ~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~ 329 (442)
|+.. +...|++. .+++.-|.+.|..++++.+|+.-+.-...-..+..++-++|.
T Consensus 199 ------~~l~---L~~~ad~l---~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ 252 (449)
T 1b89_A 199 ------CGLH---IVVHADEL---EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 252 (449)
T ss_dssp ------TTTT---TTTCHHHH---HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred ------HHHH---HHhCHhhH---HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2221 23455443 357888999999999999999887543333333444444443
No 14
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.14 E-value=4.5e-09 Score=101.43 Aligned_cols=233 Identities=10% Similarity=-0.031 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+-.++...| ++++|.+.|++..+.. +.+..+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENE--------NEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCCHHHH
Confidence 68888999999999999999999988654 346788888888888888 8999999999998764 3468899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-----------cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-----------LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS-LEQ 172 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~-p~~ 172 (442)
..+...|...|++++|...|+++. .. .|+ ...+..+...|.+.|++++|.++|+++....-. ++.
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWI-KQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHccccHHHHHHHHHHHH-Hh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 999999999999999999999987 42 233 223345578899999999999999999876422 268
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCcccccc
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQG 252 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 252 (442)
.+|..+...|...|++++|.+.|++..... ..+..++..+...+ ... +...+|...+..
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~--~~~-------g~~~~A~~~~~~----------- 272 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL--ANG-------DRSEEAVEAYTR----------- 272 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHT-------TCHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH--HHc-------CCHHHHHHHHHH-----------
Confidence 899999999999999999999999987752 23466788888877 554 344444443210
Q ss_pred ceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 253 KWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 253 ~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
. +.+.|.+...+..+-..+...|+.++|...|++.++..
T Consensus 273 -------a----------------l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 273 -------A----------------LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp -------H----------------HHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred -------H----------------HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 0 01112245667777778889999999999999998755
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.13 E-value=7.3e-09 Score=97.56 Aligned_cols=178 Identities=12% Similarity=0.014 Sum_probs=143.7
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 20 PNPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 20 ~~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
.+|+. ++..+...+.+.++.++|++.++++...++.|+...+..++. ++...| ++++|.+.|+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g--------~~~~Al~~l~~------ 126 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ--------NPDAALRTLHQ------ 126 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT--------CHHHHHHHHTT------
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHhC------
Confidence 34455 999999999999999999999999998887776666666654 777777 89999999987
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYD---PALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE 174 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~---~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t 174 (442)
+.+..++..+...|.+.|++++|...|+++. .. .|+...++ ..+..+...|++++|..+|+++.+. .+.+...
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~ 202 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQ-DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLL 202 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHH
Confidence 5688899999999999999999999999998 54 47643221 2334444558999999999999887 4557889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHh
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWF 217 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p-~~~t~~~li~~~ 217 (442)
|+.+..++.+.|++++|...|++.... .| ++.++..+...+
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999999999999999998765 34 455676666666
No 16
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.12 E-value=4.2e-09 Score=99.23 Aligned_cols=235 Identities=9% Similarity=0.002 Sum_probs=171.8
Q ss_pred CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 19 NPNPET---NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 19 ~~~p~~---~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
...|+. ..-.+..+|...|+++.|+..++. .-.|+..++..+...+...+ +.++|.+.++++...
T Consensus 27 ~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~--------~~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS--------RRDAIVAELDREMSR 94 (291)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST--------THHHHHHHHHHHHHS
T ss_pred cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHhc
Confidence 344554 445678899999999999987654 24567778888888888887 899999999999988
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 013497 96 NVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE 174 (442)
Q Consensus 96 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t 174 (442)
+..|+ ...+..+-..|...|++++|++.++. ..+...+..+...|.+.|+.++|.+.++.+.... |+...
T Consensus 95 ~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 165 (291)
T 3mkr_A 95 SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL 165 (291)
T ss_dssp CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH
Confidence 76564 55566666899999999999999866 3467789999999999999999999999998764 55432
Q ss_pred H---HHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccc
Q 013497 175 I---AALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQ 251 (442)
Q Consensus 175 y---~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 251 (442)
+ .+++..+...|++++|..+|+++.+. ...++..++.+-..+ ... ++..+|...+.
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~--~~~-------g~~~eA~~~l~----------- 224 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH--MAQ-------GRWEAAEGVLQ----------- 224 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH--HHT-------TCHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH--HHc-------CCHHHHHHHHH-----------
Confidence 1 22334444568999999999999887 345667777777777 555 44444444321
Q ss_pred cceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHh-hHHHHHHHHHHcCCcc
Q 013497 252 GKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKA-NFSEFQDWLEKNANYE 318 (442)
Q Consensus 252 ~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~-a~~~F~~m~~~~~~~d 318 (442)
+.+.+.|.+..++..++..+...|+..+ +.+.|++.++..+...
T Consensus 225 -----------------------~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 225 -----------------------EALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp -----------------------HHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred -----------------------HHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 0111223366678888888888887765 5688888887665433
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.11 E-value=3.2e-08 Score=95.15 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|+++.+.. +.+..+|..+-.++...+ ++++|.+.|+++.+.. +.+..++
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~-~~~~~~~ 135 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE--------QELLAISALRRCLELK-PDNQTAL 135 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc--------CHHHHHHHHHHHHhcC-CCCHHHH
Confidence 78888899999999999999999998764 346677887777888888 8999999999998765 3478899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHH---------------HHHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDP---------------ALFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~---------------li~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
..+...|...|++++|...++++. .. .|+. ..+.. .+..+...|++++|..+|+.+....-
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWL-RY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 999999999999999999999998 43 3332 22221 24445599999999999999987532
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCc
Q 013497 169 S-LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLG 247 (442)
Q Consensus 169 ~-p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (442)
. ++..++..+...+.+.|++++|...|++..... ..+..++..+...+ ... +...+|...+..
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~--~~~-------g~~~~A~~~~~~------ 276 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATL--ANG-------NQSEEAVAAYRR------ 276 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHT-------TCHHHHHHHHHH------
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH--HHc-------CCHHHHHHHHHH------
Confidence 2 157899999999999999999999999987652 23456777777777 444 344444443210
Q ss_pred cccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 248 WIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 248 ~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.+ .+.|.+...+..+-..+...|+.++|...|++.+...+
T Consensus 277 ------------al----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 277 ------------AL----------------ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp ------------HH----------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------HH----------------HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 00 01122456677777788899999999999999987543
No 18
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.06 E-value=8e-08 Score=85.11 Aligned_cols=185 Identities=10% Similarity=-0.020 Sum_probs=149.8
Q ss_pred CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 21 NPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 21 ~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
.|+. .|..+...+.+.|++++|++.|+++.+.. +.+...|..+...+...+ ++++|.++|+...+.. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~-~ 73 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLK--------VNDKAQESFRQALSIK-P 73 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-T
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhC-C
Confidence 3444 88999999999999999999999988653 235677888777888887 8999999999988754 3
Q ss_pred CCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 99 PNEASVTSVARLAASK-NDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 99 p~~~ty~~li~~~~~~-g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
.+..++..+...|... |++++|...++++. ..+..|+ ...+..+...|...|++++|.+.++++.+.. +.+...+.
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 151 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK 151 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence 4678999999999999 99999999999998 5323343 5778889999999999999999999988753 22578889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 177 ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+...+.+.|+.++|..++++.....-..+...+..+...+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99999999999999999999987753213555555555554
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=4.2e-08 Score=98.68 Aligned_cols=196 Identities=8% Similarity=-0.108 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|-.+-..+.+.|++++|+..|+++.+.. |+..+|..+..++...| ++++|.+.|+++.+.. +.+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG--------DLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh--------hHHHHHHHHHHHhccC-hHHHHHH
Confidence 56667788999999999999999998765 79999999988888888 9999999999998865 3467899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---------------------------------------------
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--------------------------------------------- 139 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--------------------------------------------- 139 (442)
..+..+|.+.|++++|...|+++. ... .++...
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLS-LNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 999999999999999999999987 432 111111
Q ss_pred ----------------------------------HHHHHHHHH---HcCCHHHHHHHHHHHHH-----CCCC--------
Q 013497 140 ----------------------------------YDPALFCFC---ENLEAEKAYEVEEHMGL-----MGLS-------- 169 (442)
Q Consensus 140 ----------------------------------y~~li~~~~---~~g~~~~A~~l~~~M~~-----~g~~-------- 169 (442)
+..+...+. +.|++++|..+|+++.. ..-.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 111112222 37999999999999987 3212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHH
Q 013497 170 LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVL 237 (442)
Q Consensus 170 p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~ 237 (442)
.+..+|..+...+...|++++|..+|++..... |+...+..+...+ ...|...-....+.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIM--ADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH--HTSSCCTTGGGHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHH--HHCCCHHHHHHHHHHHhh
Confidence 235678888889999999999999999998764 4466777777777 555444334444555544
No 20
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.03 E-value=3.4e-08 Score=92.23 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=136.0
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHH
Q 013497 18 TNPNPET--NFLINLQSCTKSKDLTTAISLYESAHSQ-------NLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRV 88 (442)
Q Consensus 18 ~~~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l 88 (442)
....|+. ++..+-..+...|++++|+.+|+++.+. .......++..+-..+...+ ++++|.+.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~ 91 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--------KYKDAANL 91 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--------CHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHH
Confidence 3344555 8999999999999999999999998752 22233455666666777777 89999999
Q ss_pred HHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC------CCCC-CcccHHHHHHHHHHcCCHH
Q 013497 89 FDQMLSN------NV-IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 89 ~~~M~~~------g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~------g~~p-~~~ty~~li~~~~~~g~~~ 154 (442)
|++.... +- .....++..+...|...|++++|...|++.. .. +-.| ...++..+...|...|+++
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 9988764 22 2346788899999999999999999999887 32 2223 3467888899999999999
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 155 KAYEVEEHMGLM------GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 155 ~A~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+|.+++++.... +-.| ...++..+...|...|++++|..++++...
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 2233 345788889999999999999999999875
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.03 E-value=5.6e-08 Score=88.30 Aligned_cols=180 Identities=9% Similarity=0.007 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+...+...|++++|+..|+++.+.. +.+...+..+..++...+ ++++|.++|+++.+... .+..++
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~-~~~~~~ 108 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEM--------EPKLADEEYRKALASDS-RNARVL 108 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCc-CcHHHH
Confidence 78888999999999999999999988653 335677777777888887 89999999999887643 377899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
..+...|...|++++|.+.++++. ..+..| +...+..+...|.+.|++++|.+.+++..... ..+...+..+...+.
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 999999999999999999999998 533445 45678888899999999999999999988764 235788999999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
..|+.++|..++++..... ..+...+..+...+
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLA 219 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 9999999999999987642 23455666666666
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.00 E-value=1.3e-07 Score=89.01 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+..++...+ ++++|.+.|+++.+.. +.+..++
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~-~~~~~~~ 92 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLD-PKDIAVH 92 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-cCCHHHH
Confidence 67777888999999999999999988653 236677777777888887 8999999999988764 3478899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHH--------------HH--HHHcCCHHHHHHHHHHHHHCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPAL--------------FC--FCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li--------------~~--~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
..+...|...|++++|...+++.. .. .|+.......+ .. +...|++++|.++++++.....
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWL-LS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999999999999999988 43 34433333222 33 7788999999999999987642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCcc
Q 013497 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGW 248 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 248 (442)
.+...+..+...+.+.|++++|.+.+++..... ..+..++..+...+ ... +...+|...+..
T Consensus 170 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~--~~~-------~~~~~A~~~~~~------- 231 (327)
T 3cv0_A 170 -NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATL--ANG-------NRPQEALDAYNR------- 231 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHT-------TCHHHHHHHHHH-------
T ss_pred -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH--HHc-------CCHHHHHHHHHH-------
Confidence 367889999999999999999999999987652 23456677776666 444 334444433210
Q ss_pred ccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCC
Q 013497 249 IGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNAN 316 (442)
Q Consensus 249 ~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~ 316 (442)
.+ .+.|.+...+..+...+...|+.++|.+.|++.+...+.
T Consensus 232 -----------a~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 232 -----------AL----------------DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp -----------HH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -----------HH----------------HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 00 011113456677777788899999999999999886654
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.98 E-value=8.7e-08 Score=84.87 Aligned_cols=176 Identities=13% Similarity=0.045 Sum_probs=144.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCCCCCchhhHHHHHHHHHHHHhCCCCCC-HH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDS-ATDPSSKDSALRHGFRVFDQMLSNNVIPN-EA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ 102 (442)
.|..+...|...|++++|.+.|+++.+.. +.+..++..+...+... + ++++|.+.|+.+.+.+..|+ ..
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~ 114 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLN--------RPAESMAYFDKALADPTYPTPYI 114 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHHTSTTCSCHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCcCCcchHH
Confidence 88889999999999999999999987653 23667787777788877 7 89999999999988433343 67
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
++..+...+...|++++|...|+++. ... ..+...+..+...|.+.|+.++|.++++......-..+...+..+...+
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSL-AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88999999999999999999999988 432 2346788999999999999999999999988754324677788888888
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
...|+.+++..+++.+... .|+...+..+
T Consensus 193 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~ 221 (225)
T 2vq2_A 193 KALGNAQAAYEYEAQLQAN--FPYSEELQTV 221 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999998754 4655544433
No 24
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.98 E-value=9.5e-08 Score=86.73 Aligned_cols=172 Identities=7% Similarity=-0.017 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC-CHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP-NEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p-~~~t 103 (442)
.|..+...|.+.|++++|.+.|+++.+.. +.+...|..+..++...+ ++++|.++|+++...+..| +..+
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~ 143 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQK--------RYEEAYQRLLEASQDTLYPERSRV 143 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHhCccCcccHHH
Confidence 88889999999999999999999987653 236677877777888877 8999999999998744445 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+..+...|.+.|++++|...|++.. ... ..+..++..+...|...|+.++|.++++...+.. ..+...+..+...+.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 220 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSL-RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAK 220 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 8889999999999999999999988 432 2356788999999999999999999999987653 346778889999999
Q ss_pred hcCCHHHHHHHHHHHHhccCCCChHHH
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
+.|+.++|.++++++.+. .|+...+
T Consensus 221 ~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 221 VFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 999999999999999775 4554433
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.97 E-value=6.5e-08 Score=87.66 Aligned_cols=225 Identities=9% Similarity=0.010 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC--CC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI--PN-- 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~--p~-- 100 (442)
.|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-.++...+ ++++|.+.|+...+.... |+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG--------EYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHhCcccccchH
Confidence 78888899999999999999999988776 77788888888888888 899999999998764321 22
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 101 --EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
..+|..+...|...|++++|...|++.. .. .|+ -..+.+.|++++|.+.++.+.... +.+...|..+
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 145 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSL-TE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 5889999999999999999999999998 43 455 345777899999999999988753 2245678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEee
Q 013497 179 LKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKR 258 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~ 258 (442)
...+...|++++|...+++..... ..++.++..+...+ ... +...+|+..+..
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~--~~~-------~~~~~A~~~~~~----------------- 198 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAAL--AKL-------MSFPEAIADCNK----------------- 198 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHT-------TCHHHHHHHHHH-----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHH--HHh-------CCHHHHHHHHHH-----------------
Confidence 888999999999999999987653 23456667776666 444 334444443210
Q ss_pred eccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 259 GSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 259 ~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
.+ .+.|.+...+..+-..+...|+.++|++.|++.++..
T Consensus 199 -al----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 199 -AI----------------EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp -HH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HH----------------HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 00 0112234556666677888899999999999887654
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.5e-07 Score=88.57 Aligned_cols=242 Identities=7% Similarity=-0.095 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+...+...|++++|+++|+++.+..- .+...+..+...+...+ ++++|..+|+++.+... .+..+|
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~~-~~~~~~ 93 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELN--------KANELFYLSHKLVDLYP-SNPVSW 93 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhh--------hHHHHHHHHHHHHHhCc-CCHHHH
Confidence 677788888899999999999999876532 23344555556666666 89999999999987542 367788
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 105 TSVARLAASKN-DGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 105 ~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
..+...+...| ++++|...|++.. .. .| +...|..+...|...|++++|.+.++......-. +...+..+...|
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKAT-TL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHH-TT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH-Hh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 99999999999 9999999999988 43 34 4678999999999999999999999999876422 456677799999
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccC
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVD 262 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~ 262 (442)
...|++++|...+++..... ..+...+..+...+ ...|...-....+++++.... ...
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~~~-------------------~~~ 227 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA--FQNGEWKTAEKWFLDALEKIK-------------------AIG 227 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHT-------------------TTS
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH--HHcccHHHHHHHHHHHHHHhh-------------------hcc
Confidence 99999999999999987653 23456667776666 444322222233333333211 000
Q ss_pred CCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 263 ESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 263 ~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.... .+.....+..+-..+...|+.++|++.|++.++..+
T Consensus 228 ~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 228 NEVT-------------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp CSCT-------------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred cccc-------------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 0000 011335666777778889999999999999998654
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.96 E-value=1.8e-07 Score=88.05 Aligned_cols=235 Identities=6% Similarity=-0.062 Sum_probs=173.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+...+.+.|+.++|..+|+++.+..- .+...|..+-..+...+. .+++|.+.|+...+... .+..+|
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~-------~~~~A~~~~~~a~~~~~-~~~~~~ 128 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGH-------KNEHARRYLSKATTLEK-TYGPAW 128 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCS-------CHHHHHHHHHHHHTTCT-TCTHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhCC-ccHHHH
Confidence 667788888999999999999999886532 244566666555444430 58999999999987643 356789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...|...|++++|...|++.. ... ..+..++..+...|...|++++|.+.++...... +.+...+..+...+..
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 205 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAA-QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQ 205 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 999999999999999999999988 432 2345778889999999999999999999998764 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHhccC--------CCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEE
Q 013497 185 TGRVEKVYQYLQKLRSTVR--------CVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVV 256 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~--------~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v 256 (442)
.|++++|...+++.....- .....++..+...+ ... +...+|...+..
T Consensus 206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~--~~~-------g~~~~A~~~~~~--------------- 261 (330)
T 3hym_B 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC--RKL-------KKYAEALDYHRQ--------------- 261 (330)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH--HHT-------TCHHHHHHHHHH---------------
T ss_pred cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH--HHh-------cCHHHHHHHHHH---------------
Confidence 9999999999999876421 22345777777777 444 334444432210
Q ss_pred eeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 257 KRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 257 ~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
.+. +.|.+...+..+-..+...|+.++|.+.|++.++..
T Consensus 262 ---a~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 262 ---ALV----------------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp ---HHH----------------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred ---HHh----------------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 000 011134456666677888999999999999877643
No 28
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.4e-08 Score=99.37 Aligned_cols=235 Identities=7% Similarity=-0.050 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+...+.+.|++++|..+|+++.+.. |+..+|..+..++...+ ++++|.+.|+.+..... .+..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~-~~~~~~ 307 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRN--------DSTEYYNYFDKALKLDS-NNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSS--------CCTTGGGHHHHHHTTCT-TCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCC--------CHHHHHHHHHHHhhcCc-CCHHHH
Confidence 88889999999999999999999988764 34777777777888888 89999999999887643 367789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...|...|++++|...|++.. ... ..+..++..+...|...|++++|..+++.+.... +.+..+|..+...+.+
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAK-ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHH-HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHH
Confidence 999999999999999999999988 432 3356788999999999999999999999988753 2256788899999999
Q ss_pred cCCHHHHHHHHHHHHhccC-CCC----hHHHHHHHHHhcccc---CCCcccchhhHHHHHHhcCCcccCCccccccceEE
Q 013497 185 TGRVEKVYQYLQKLRSTVR-CVN----EETGKIIEDWFSGQK---VNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVV 256 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~-~p~----~~t~~~li~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v 256 (442)
.|++++|...++++....- .++ ...+..+...+ .. . +...+|...+..
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-------~~~~~A~~~~~~--------------- 440 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL--TRNPTV-------ENFIEATNLLEK--------------- 440 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH--HTSCCT-------THHHHHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH--hhhhhc-------CCHHHHHHHHHH---------------
Confidence 9999999999999876421 121 22666666666 44 3 455555543220
Q ss_pred eeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCC
Q 013497 257 KRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNAN 316 (442)
Q Consensus 257 ~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~ 316 (442)
.+ .+.|.+...+..+...+...|+.++|.+.|++.++..+.
T Consensus 441 ---a~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 441 ---AS----------------KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp ---HH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ---HH----------------HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 00 011223455666777788899999999999999886543
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.94 E-value=7.2e-08 Score=92.65 Aligned_cols=181 Identities=10% Similarity=-0.099 Sum_probs=144.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...| ++++|.+.|+.+........ ..+
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~-~~~ 169 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES--------LQRQACEILRDWLRYTPAYA-HLV 169 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSTTTG-GGC
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcCcH-HHH
Confidence 88899999999999999999999988664 346778888888888888 89999999999988653322 222
Q ss_pred HH---------------HHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 105 TS---------------VARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 105 ~~---------------li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
.. .+..+...|++++|...|+++. .. .|+ ..++..+...|.+.|++++|...|++....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV-RL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp C---------------CTTHHHHHHHHHHHHHHHHHHHH-HH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH-Hh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2444458999999999999998 43 444 678999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccC
Q 013497 167 GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV 222 (442)
Q Consensus 167 g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~ 222 (442)
. +.+..+|..+...+.+.|++++|...|++..... ..+...+..+...+ ...
T Consensus 247 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~--~~~ 298 (368)
T 1fch_A 247 R-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC--INL 298 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHH
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH--HHC
Confidence 3 2357889999999999999999999999987652 23455677777777 444
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.93 E-value=3.2e-09 Score=104.31 Aligned_cols=159 Identities=9% Similarity=0.066 Sum_probs=63.4
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 21 NPET-NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 21 ~p~~-~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
.||. +|..++..+.+.|++++|+..++..++. .+++.+.+.|+.+|.+.| +++++.++++ .|
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg--------~l~e~e~f~~-------~p 120 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN--------RLAELEEFIN-------GP 120 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTT-------CC
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhC--------CHHHHHHHHc-------CC
Confidence 3555 8888888888888888888877666553 455777888888887777 7777777774 36
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
+..+|+.+-..|...|++++|...|..+ ..|..+..++++.|++++|.+.+..+ .+..+|..++
T Consensus 121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~ 184 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 184 (449)
T ss_dssp ----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHH
Confidence 7778888888888888888888888765 25778888888888888888877777 2667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+|+..|+++.|...... +...+.-...++..|
T Consensus 185 ~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Y 217 (449)
T 1b89_A 185 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYY 217 (449)
T ss_dssp HHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHH
Confidence 777777777777544432 223333344566666
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.92 E-value=9.4e-08 Score=92.08 Aligned_cols=197 Identities=8% Similarity=-0.068 Sum_probs=147.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC------
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI------ 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~------ 98 (442)
.|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...| ++++|.++|+++.+....
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~ 171 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTS--------HQQDACEALKNWIKQNPKYKYLVK 171 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCHHHHCC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccc--------cHHHHHHHHHHHHHhCccchHHHh
Confidence 89999999999999999999999988653 335788888888888888 999999999998774311
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC---CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 013497 99 ---PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP---RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 99 ---p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
....++..+...+.+.|++++|..+|+++. .. .| +..+|..+...|.+.|++++|.+.|++..+.. +.+.
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 247 (365)
T 4eqf_A 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA-HQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDY 247 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHH-HH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH-Hh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 013344556889999999999999999998 43 34 47789999999999999999999999988753 3367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
.+|..+...|.+.|++++|...|++.... .|+ ..++..+...+ ...|...-....+++++..
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC--INLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH--HHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999998775 344 56777777777 5554333333444455443
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.92 E-value=8.7e-08 Score=86.18 Aligned_cols=198 Identities=8% Similarity=-0.015 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|..+|+++.+.. +.+...+..+...+...+ ++++|.+.|++..+.. +.+..++
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 94 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVN--------ELERALAFYDKALELD-SSAATAY 94 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcC-CcchHHH
Confidence 67777788888899999999999887643 235667777666777777 8999999998887654 2367888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...|...|++++|.+.+++.. ... ..+...+..+...|.+.|++++|.++++++.... ..+...+..+...+.+
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKAL-RAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 888888999999999999998887 432 3356678888888889999999999998887653 2357778888888889
Q ss_pred cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 185 TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
.|++++|...|++..... ..+..++..+...+ ...|...-....+++++..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTY--AYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH--HHccCHHHHHHHHHHHHcc
Confidence 999999999998887652 23455666666666 4443333333444444443
No 33
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.91 E-value=1.6e-07 Score=80.24 Aligned_cols=164 Identities=14% Similarity=0.046 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...+ ++++|.+.|+.+.+.. +.+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTG--------AVDRGTELLERSLADA-PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-CCCHHHH
Confidence 78888889999999999999999887543 246677777777887787 8999999999988763 3467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...+...|++++|.+.+++.. ... ..+...+..+...|...|++++|.+.++...... ..+...+..+...+..
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVA-EAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH
Confidence 999999999999999999999987 432 3466788889999999999999999999988764 3367889999999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q 013497 185 TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~ 201 (442)
.|+.++|...+++..+.
T Consensus 157 ~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 157 MGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999988654
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.89 E-value=3.2e-07 Score=82.06 Aligned_cols=188 Identities=12% Similarity=-0.002 Sum_probs=147.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...| ++++|...|++..+... -+..++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~~~P-~~~~a~ 76 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLG--------LVNPALENGKTLVARTP-RYLGGY 76 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CcHHHH
Confidence 77778888999999999999999988653 235666766666788887 89999999999887642 367888
Q ss_pred HHHHHHHHhc-----------CCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 013497 105 TSVARLAASK-----------NDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 105 ~~li~~~~~~-----------g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
..+-..|.+. |++++|...|++.. +. .|+ ...|..+-..|...|+.++|...|++..+.. .+.
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE-RV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 9999999999 99999999999988 43 454 5678888899999999999999999998887 688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
..+..+-..|...|++++|...|++..+. .|+ +..+..+...+ ... +...+|+..
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~--~~~-------g~~~~A~~~ 207 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL--LLK-------GKAEEAARA 207 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH--TC-----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH--HHc-------cCHHHHHHH
Confidence 99999999999999999999999998765 454 45666666666 444 455555544
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.88 E-value=9.8e-07 Score=83.80 Aligned_cols=178 Identities=10% Similarity=0.003 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|+++.+.. +.+..+|..+-..+...+ ++++|.+.|+.+.+.. +-+..+|
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 74 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG--------KSKAALPDLTKVIALK-MDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhC-CCcchHH
Confidence 67777888999999999999999988653 235667777777777777 8999999999988764 2367899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC----CcccHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP----RLRTYDPA------------LFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p----~~~ty~~l------------i~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
..+...|...|++++|...|++.. . +.| +...+..+ ...+...|++++|.++++.+....
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 150 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVL-K--SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC- 150 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH-h--cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999999999999999999999988 4 355 33344444 478899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 169 SLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+.+...+..+...+...|++++|...+++..... ..++.++..+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3467888999999999999999999999998752 33456666676666
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.87 E-value=5.4e-07 Score=84.63 Aligned_cols=200 Identities=9% Similarity=-0.025 Sum_probs=151.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------------------------C------
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA-------------------------T------ 73 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~-------------------------~------ 73 (442)
.|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...+ .
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 77778888888888888888888877653 235566666655555443 0
Q ss_pred --------C--CCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHH
Q 013497 74 --------D--PSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPA 143 (442)
Q Consensus 74 --------~--~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~l 143 (442)
. .+...|++++|.++|+++.+... .+..++..+...|.+.|++++|...+++.. ... ..+..+|..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l 212 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAV-ELR-PDDAQLWNKL 212 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCcHHHHHHH
Confidence 2 26677889999999998877643 378899999999999999999999999988 432 3356789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCC-----------ChHHHHH
Q 013497 144 LFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCV-----------NEETGKI 212 (442)
Q Consensus 144 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p-----------~~~t~~~ 212 (442)
...|...|++++|.+.+++..+.. +.+..+|..+...+.+.|++++|.+.|++.....-.. +..++..
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDF 291 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHH
Confidence 999999999999999999987753 2357889999999999999999999999987653221 3556666
Q ss_pred HHHHhccccCCCcccchhhHHHHHHh
Q 013497 213 IEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 213 li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
+...+ ... +..++|...
T Consensus 292 l~~~~--~~~-------g~~~~A~~~ 308 (327)
T 3cv0_A 292 FRMLL--NVM-------NRPDLVELT 308 (327)
T ss_dssp HHHHH--HHT-------TCHHHHHHH
T ss_pred HHHHH--Hhc-------CCHHHHHHH
Confidence 66666 444 445555554
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.85 E-value=2.9e-07 Score=84.32 Aligned_cols=227 Identities=7% Similarity=-0.087 Sum_probs=161.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARL 110 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 110 (442)
...|++++|+..|+++.+..... +..+|..+-..+...+ ++++|.+.|++..+... .+..+|..+...
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~~-~~~~~~~~la~~ 86 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--------LRALARNDFSQALAIRP-DMPEVFNYLGIY 86 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHcCC-CcHHHHHHHHHH
Confidence 34578999999999998764211 3456666666777777 89999999999887643 368899999999
Q ss_pred HHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 013497 111 AASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190 (442)
Q Consensus 111 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 190 (442)
|...|++++|...|++.. ... +.+..+|..+...|.+.|++++|.+.|+.+.+. .|+...+..++..+...|+.++
T Consensus 87 ~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 87 LTQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHccCHHHHHHHHHHHH-hcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence 999999999999999998 431 235788999999999999999999999999875 4555555666666677899999
Q ss_pred HHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcC
Q 013497 191 VYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSC 270 (442)
Q Consensus 191 a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c 270 (442)
|...+.+..... .++...+. +...+ ...+. ..+|+..+.. .+. ..+
T Consensus 163 A~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~-------~~~a~~~~~~------------------~~~---~~~-- 208 (275)
T 1xnf_A 163 AKEVLKQHFEKS-DKEQWGWN-IVEFY--LGNIS-------EQTLMERLKA------------------DAT---DNT-- 208 (275)
T ss_dssp HHHHHHHHHHHS-CCCSTHHH-HHHHH--TTSSC-------HHHHHHHHHH------------------HCC---SHH--
T ss_pred HHHHHHHHHhcC-CcchHHHH-HHHHH--HHhcC-------HHHHHHHHHH------------------Hhc---ccc--
Confidence 999998776642 33444444 33334 22211 1233322110 000 000
Q ss_pred CCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 271 GDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 271 ~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
...+.+...+..+-..+...|+.++|...|++.+...
T Consensus 209 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 209 -------SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -------cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 0111235667777777888999999999999998754
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.83 E-value=3.5e-07 Score=82.18 Aligned_cols=164 Identities=11% Similarity=0.078 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...+ ++++|.++|+++.+.. +.+..++
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 128 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE--------MYKEAKDMFEKALRAG-MENGDLF 128 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHT-CCSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhC-CCCHHHH
Confidence 88889999999999999999999988653 236677777777888887 8999999999988764 3467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...+.+.|++++|...+++.. ... ..+...+..+...|.+.|+.++|.+.++...... ..+..+|..+...|.+
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAV-ELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999987 432 3356788899999999999999999999987753 2357789999999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q 013497 185 TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~ 201 (442)
.|+.++|.+.+++..+.
T Consensus 206 ~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 206 KENREKALEMLDKAIDI 222 (243)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcc
Confidence 99999999999998764
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.81 E-value=2.3e-06 Score=81.16 Aligned_cols=230 Identities=10% Similarity=0.025 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH------------HHHHHhcCCCCCCchhhHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL----SLHHFNAL------------LYLCSDSATDPSSKDSALRHGFRV 88 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p----~~~ty~~l------------l~~~~~~~~~~~~~~~~~~~a~~l 88 (442)
.|..+-..+.+.|++++|...|+++.+. .| +...+..+ -..+...+ ++++|.++
T Consensus 73 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~ 142 (359)
T 3ieg_A 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--------DYTAAITF 142 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CHHHHHHH
Confidence 7888888888889999999988888764 34 33333333 23455555 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 013497 89 FDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 89 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~ 168 (442)
|+++.+.. +.+..++..+...+...|++++|...+++.. ... ..+..+|..+...|...|++++|.+.++...+..-
T Consensus 143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 143 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS-KLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99988764 3478899999999999999999999999998 432 34668899999999999999999999999886532
Q ss_pred CCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhccCCCChHH-----HHHHHHHhccccCCCcccchhh
Q 013497 169 SLEQQEIA------------ALLKVSAETGRVEKVYQYLQKLRSTVRCVNEET-----GKIIEDWFSGQKVNGVSCDLGL 231 (442)
Q Consensus 169 ~p~~~ty~------------~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t-----~~~li~~~~~~~~~~~~~~~~~ 231 (442)
.+...+. .+...+.+.|++++|...+++..... |+... +..+...+ ... +.
T Consensus 220 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~--~~~-------~~ 287 (359)
T 3ieg_A 220 -DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCF--SKD-------EK 287 (359)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHH--HHT-------TC
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHH--HHc-------cC
Confidence 2333333 23556889999999999999988753 44322 22233444 333 34
Q ss_pred HHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 013497 232 VKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWL 311 (442)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~ 311 (442)
..+|+..+.. .+ .+.|.+...+..+-..+...|+.++|.+.|++.+
T Consensus 288 ~~~A~~~~~~------------------~~----------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 288 PVEAIRICSE------------------VL----------------QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHH------------------HH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------------HH----------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444443210 00 0112244567777777888999999999999998
Q ss_pred HH
Q 013497 312 EK 313 (442)
Q Consensus 312 ~~ 313 (442)
+.
T Consensus 334 ~~ 335 (359)
T 3ieg_A 334 EH 335 (359)
T ss_dssp TT
T ss_pred hc
Confidence 74
No 40
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.76 E-value=6.9e-06 Score=75.56 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD----SATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
++..+-..|.+.|++++|+..|.+..+.+ +..++..|-..+.. .+ ++++|.+.|++..+.+ +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK--------NLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC--------CHHHHHHHHHHHHHCC---C
Confidence 66677778889999999999999988843 34566666556666 55 8999999999998876 7
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 013497 101 EASVTSVARLAAS----KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 101 ~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
..++..+-..|.. .+++++|...|++.. ..+ +...+..+-..|.. .++.++|.+.|+...+.+ +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 7888899999999 999999999999988 654 67788888899999 999999999999998876 56
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 173 QEIAALLKVSAE----TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 173 ~ty~~li~~~~~----~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
..+..+-..|.. .++.++|...|++..+.+ ++..+..+-..|
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 192 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 777888888888 999999999999988764 344555555555
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.71 E-value=5.5e-07 Score=80.49 Aligned_cols=161 Identities=9% Similarity=-0.073 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCCCCCchhhHHHHHHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDS-----------ATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~-----------~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
.|..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++... | ++++|.+.|++..
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g--------~~~~A~~~~~~al 111 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKG--------YLEQALSVLKDAE 111 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhccccc--------CHHHHHHHHHHHH
Confidence 78888889999999999999999988653 23456666665666666 6 9999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 94 SNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 94 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
+... -+..+|..+-..|...|++++|...|++.. +.. .+...+..+-..|...|++++|...|+...+.. +.+..
T Consensus 112 ~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 186 (217)
T 2pl2_A 112 RVNP-RYAPLHLQRGLVYALLGERDKAEASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLD 186 (217)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 7543 267888999999999999999999999998 655 678889999999999999999999999998753 22577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
.+..+...+...|+.++|...|++..
T Consensus 187 ~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88889999999999999999987654
No 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.71 E-value=2.3e-06 Score=86.52 Aligned_cols=246 Identities=8% Similarity=-0.021 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+|..+-..+...|++++|+..|+++.+. .|+..+|..+-..+...+ ++++|.+.|+...+... .+..+|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~-~~~~~~ 313 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKE--------NSQEFFKFFQKAVDLNP-EYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSS--------CCHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhc--------CHHHHHHHHHHHhccCC-CCHHHH
Confidence 5666777888999999999999998875 456677777766777777 89999999999887643 367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...|...|++++|...|++.. ... ..+..+|..+...|...|++++|.++++++.+.. +.+...|..+...+..
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQ-SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 999999999999999999999998 432 2246789999999999999999999999998764 3356788999999999
Q ss_pred cCCHHHHHHHHHHHHhccCCC-----ChHHHHHHHHHhcc-ccCCCcccchhhHHHHHHhcCCcccCCccccccceEEee
Q 013497 185 TGRVEKVYQYLQKLRSTVRCV-----NEETGKIIEDWFSG-QKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKR 258 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p-----~~~t~~~li~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~ 258 (442)
.|++++|...|++.....-.. ....+..+...+.. ...+...+..+...+|...+..
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------- 453 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK----------------- 453 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH-----------------
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH-----------------
Confidence 999999999999986642111 11111111122200 0001111222555555554320
Q ss_pred eccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcc
Q 013497 259 GSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYE 318 (442)
Q Consensus 259 ~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d 318 (442)
. +.+.|.+...+..+-..+...|+.++|.+.|++.++..+..+
T Consensus 454 -a----------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 454 -A----------------CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp -H----------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred -H----------------HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 0 111222445677777778899999999999999998665443
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.71 E-value=3.1e-06 Score=72.79 Aligned_cols=164 Identities=11% Similarity=0.045 Sum_probs=136.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+=..|.+.|++++|++.|++..+.. +-+..+|..+-.++...+ ++++|...+........ -+...+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~--------~~~~a~~~~~~~~~~~~-~~~~~~ 76 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIG--------LPNDAIESLKKFVVLDT-TSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCC-CCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCc-hhHHHH
Confidence 78888889999999999999999987653 235667777777888888 89999999999877543 356778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+-..+...++++.|...+.+.. ... .-+...+..+-..|.+.|++++|.+.|++..+.. +.+..+|..+-.+|.+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~-~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAI-ALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 888889999999999999999987 431 2346778888899999999999999999988754 2367789999999999
Q ss_pred cCCHHHHHHHHHHHHhc
Q 013497 185 TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~ 201 (442)
.|+.++|.+.|++..+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999987653
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=9e-07 Score=79.99 Aligned_cols=165 Identities=12% Similarity=0.027 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN--LRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV- 97 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g--~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~- 97 (442)
.|..+-..+.+.|++++|+..|.++.+.. ..|+ ..+|..+-..+...+ ++++|.+.|+...+...
T Consensus 40 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 40 YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--------DLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCch
Confidence 78888899999999999999999987532 2223 467777777777777 89999999988876321
Q ss_pred -----------------------C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCH
Q 013497 98 -----------------------I-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (442)
Q Consensus 98 -----------------------~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~ 153 (442)
. .+...|..+...+...|++++|...|++.. ... ..+..+|..+...|.+.|++
T Consensus 112 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~ 189 (258)
T 3uq3_A 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSF 189 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHhCCH
Confidence 1 123445555555666666666666666655 221 22344555555666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
++|...++...+.. +.+...|..+...+.+.|+.++|...+++..+
T Consensus 190 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 190 PEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666555432 12345555555666666666666666655543
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.68 E-value=1.4e-05 Score=73.02 Aligned_cols=241 Identities=10% Similarity=-0.036 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC--HHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EAS 103 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~--~~t 103 (442)
+-..-..+.+.|++++|+.+|+++.+..- -+...+..+-..+...+ ++++|.+.|+...+....|+ ..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELA--------KYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTT--------CHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhccCchhHHHHH
Confidence 33455678899999999999999886532 23346666666777777 89999999999988442232 445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
|..+-..|...|++++|...|++.. ... ..+..+|..+-..|...|++++|.+.|++..+.. +.+...|..+-..+.
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAV-DRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHH
Confidence 8899999999999999999999988 431 2345789999999999999999999999987652 234566666662444
Q ss_pred hcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCC---cccchhhHHHHHHhcCCcccCCccccccceEEeee
Q 013497 184 ETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNG---VSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRG 259 (442)
Q Consensus 184 ~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~ 259 (442)
..+++++|.+.|++..+. .|+ ...+..+...+ ...+. ..-....+++++.....
T Consensus 154 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~------------------ 211 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL--KPNIYIGYLWRARAN--AAQDPDTKQGLAKPYYEKLIEVCAP------------------ 211 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH--HHHSTTCSSCTTHHHHHHHHHHHGG------------------
T ss_pred HHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHH--HHcCcchhhHHHHHHHHHHHHHHhc------------------
Confidence 566999999999998875 344 34444444444 22222 22233455555554210
Q ss_pred ccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcC
Q 013497 260 SVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNA 315 (442)
Q Consensus 260 ~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~ 315 (442)
.|. .+ .+.-...+..+-..+...|+.++|.+.|++.++..+
T Consensus 212 -------~~~-------~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 212 -------GGA-------KY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp -------GGG-------GG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------ccc-------cc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 000 00 001123455555557778999999999999987554
No 46
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.65 E-value=1.2e-06 Score=70.20 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~ 105 (442)
|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...+ ++++|..+|+++...+ +.+..++.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~~ 73 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG--------DYDEAIEYYQKALELD-PRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHC-CCchHHHH
Confidence 4444555555555555555555554332 123344444444444444 4555555555554432 12344445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
.+...+...|++++|...++++. ... ..+..++..+...|.+.|+.++|...++++.
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKAL-ELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 55555555555555555555544 221 1123344444444445555555554444443
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.64 E-value=4.8e-07 Score=82.91 Aligned_cols=178 Identities=11% Similarity=-0.012 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+...|++++|+..|+++.+.. +.+..+|..+-.++...+ ++++|.+.|++..+... .+..++
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~~-~~~~~~ 114 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG--------NFDAAYEAFDSVLELDP-TYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhcCc-cccHHH
Confidence 89999999999999999999999988753 236788888888888888 89999999999987542 367899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+...|.+.|++++|...|+++. . +.|+...+...+..+...|+.++|...++...... .++...+ .++..+..
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~-~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 189 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFY-Q--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLG 189 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-H--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHH
Confidence 999999999999999999999998 4 35777666677777788899999999998776642 2333344 36777778
Q ss_pred cCCHHHHHHHHHHHHhccCCC---ChHHHHHHHHHh
Q 013497 185 TGRVEKVYQYLQKLRSTVRCV---NEETGKIIEDWF 217 (442)
Q Consensus 185 ~g~~~~a~~ll~~m~~~~~~p---~~~t~~~li~~~ 217 (442)
.+..++|...+.+........ +..++..+...+
T Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 888889999888775432111 134455555555
No 48
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.64 E-value=7.6e-07 Score=81.48 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=119.2
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC------CCCC-
Q 013497 34 TKSKDLTTAISLYESAHS-------QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN------NVIP- 99 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~-------~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~------g~~p- 99 (442)
...|++++|+.+|++..+ ........++..+-..+...+ ++++|.+.|++..+. +-.|
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--------KYKEAAHLLNDALAIREKTLGKDHPA 83 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 446777777777777553 122223456666666777777 899999999988764 2223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC------CC-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC------
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEF------NV-VPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM------ 166 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~------g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~------ 166 (442)
...+|..+...|...|++++|...|++.. .. .- .....+|..+-..|...|++++|.+.+++....
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999887 32 11 223577888999999999999999999998764
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 167 GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 167 g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+-.| ...++..+...|...|++++|..++++...
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123 356788899999999999999999998865
No 49
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.63 E-value=2.9e-06 Score=85.79 Aligned_cols=187 Identities=10% Similarity=-0.021 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPN------EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~------~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 154 (442)
.+++|.++|+.+.+...... ..+|..+-..+...|++++|...|++.. .. .|+..+|..+...|...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI-NL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-hc--CCCchHHHHHHHHHHHhcCHH
Confidence 45556666666554322110 2346666677888888899999988887 43 566777888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHH
Q 013497 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKN 234 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~ 234 (442)
+|.+.++...... +.+..+|..+...+...|++++|...|++..... .-+...+..+...+ ... +...+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~--~~~-------g~~~~ 362 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLL--YKQ-------GKFTE 362 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHH--HHT-------TCHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH--HHc-------CCHHH
Confidence 9999888887653 2356778888888888999999999988887652 12345566666666 444 33444
Q ss_pred HHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 235 AVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
|...+.. .+ .+.|.+...+..+-..+...|+.++|...|++.++..
T Consensus 363 A~~~~~~------------------~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 363 SEAFFNE------------------TK----------------LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHH------------------HH----------------HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH------------------HH----------------HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 4332210 00 0011133455666666788899999999999998865
Q ss_pred C
Q 013497 315 A 315 (442)
Q Consensus 315 ~ 315 (442)
+
T Consensus 409 ~ 409 (537)
T 3fp2_A 409 E 409 (537)
T ss_dssp H
T ss_pred C
Confidence 3
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.62 E-value=4.1e-05 Score=70.28 Aligned_cols=170 Identities=11% Similarity=-0.005 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 24 TNFLINLQSCTK----SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSD----SATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 24 ~~~~~li~~~~k----~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
..+..+-..|.. .+++++|+..|++..+.+ +...+..|-..+.. .+ ++++|.+.|++..+.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ--------NTNKALQYYSKACDL 107 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc--------CHHHHHHHHHHHHHc
Confidence 467777788888 999999999999998876 56777777667776 55 899999999999887
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 013497 96 NVIPNEASVTSVARLAAS----KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 96 g~~p~~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g 167 (442)
+ +..++..+-..|.. .+++++|...|++.. +.+ +...+..+-..|.. .++.++|.+.|+...+.+
T Consensus 108 ~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~ 180 (273)
T 1ouv_A 108 K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK 180 (273)
T ss_dssp T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 6 77889999999999 999999999999988 655 56677788888888 999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 168 LSLEQQEIAALLKVSAE----TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 168 ~~p~~~ty~~li~~~~~----~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+...+..+-..|.. .++.++|...|++..+.+ ++..+..+-..|
T Consensus 181 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 181 ---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp ---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 56778888889999 999999999999988764 255555565666
No 51
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.59 E-value=2.4e-06 Score=68.39 Aligned_cols=130 Identities=10% Similarity=0.057 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT 139 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t 139 (442)
.|..+...+...+ ++++|.++|+++.+... .+..++..+...+...|++++|..+++++. ... ..+...
T Consensus 3 ~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQG--------DYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHH
T ss_pred HHHHHHHHHHHcC--------cHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC-CCchHH
Confidence 4555666666666 89999999999987643 467888999999999999999999999988 442 335677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+..+...+...|++++|.++++++.... +.+..++..+...+.+.|+.++|...+.++...
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8889999999999999999999998754 235778889999999999999999999988754
No 52
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.58 E-value=6.4e-06 Score=77.63 Aligned_cols=167 Identities=9% Similarity=0.044 Sum_probs=123.8
Q ss_pred CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 21 NPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-LH-HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 21 ~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~-ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
.|+. .|..+...+.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.+ ++++|..+|++..+..
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDA 164 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHTST
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcC
Confidence 4544 7888888888899999999999988863 443 22 6777777666665 7889999999887754
Q ss_pred CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--C
Q 013497 97 VIPNEASVTSVARLAA-SKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-LSL--E 171 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~-~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-~~p--~ 171 (442)
. ++...|........ ..|+.++|..+|+... +. .| +...|..++..+.+.|+.++|..+|+...... +.| .
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL-KK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 3 33444544333322 3689999999998876 32 23 45677888888888899999999999988863 455 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
...|..++....+.|+.+.|..+++++.+.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667888888888899999999888888764
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.56 E-value=1.5e-06 Score=80.87 Aligned_cols=167 Identities=12% Similarity=0.057 Sum_probs=129.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ------NL-RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~------g~-~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~-- 95 (442)
.+..+-..|...|++++|+..|+++.+. +- .....+|..+-..+...+ ++++|.+.|++..+.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--------cHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999997753 22 223456666666777777 899999999988764
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC------CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 96 ----NVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 96 ----g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
+-.| ...++..+...|...|++++|.+.|++.. .. +-.| ...++..+...|...|++++|.+.+++.
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2223 45678889999999999999999999987 32 1123 2357888999999999999999999988
Q ss_pred HHC------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 164 GLM------------------------------------------------GLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 164 ~~~------------------------------------------------g~~p~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
.+. .-..+..+|..+...|.+.|++++|.++|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 752 11223456778888888999999999888
Q ss_pred HHHHh
Q 013497 196 QKLRS 200 (442)
Q Consensus 196 ~~m~~ 200 (442)
++..+
T Consensus 302 ~~al~ 306 (311)
T 3nf1_A 302 EAAMR 306 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=1.2e-05 Score=75.73 Aligned_cols=179 Identities=11% Similarity=0.018 Sum_probs=134.3
Q ss_pred HHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 013497 25 NFLINLQSCT-------KSKDL-------TTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFD 90 (442)
Q Consensus 25 ~~~~li~~~~-------k~g~~-------~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~ 90 (442)
.|..+...+. +.|++ ++|..+|++..+.--+-+...|..+..++...+ ++++|.++|+
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~ 123 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM--------KYEKVHSIYN 123 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--------CHHHHHHHHH
Confidence 5665555554 45885 999999999887311235568888888888887 8999999999
Q ss_pred HHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHH-HHcCCHHHHHHHHHHHHHC
Q 013497 91 QMLSNNVIPN-E-ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCF-CENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 91 ~M~~~g~~p~-~-~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~-~~~g~~~~A~~l~~~M~~~ 166 (442)
+..+. .|+ . .+|..+...+.+.|++++|..+|++.. .. .|+ ...|....... ...|+.++|..+|+...+.
T Consensus 124 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 124 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99874 453 3 389999999999999999999999988 43 343 33333222221 1269999999999998765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCC--ChHHHHHHHHHh
Q 013497 167 GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV-RCV--NEETGKIIEDWF 217 (442)
Q Consensus 167 g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~-~~p--~~~t~~~li~~~ 217 (442)
. +-+...|..++..+.+.|+.++|..+|++..... +.| ....|..++...
T Consensus 199 ~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 199 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp H-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2 2267889999999999999999999999998863 455 345677666666
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.55 E-value=1e-06 Score=80.60 Aligned_cols=167 Identities=11% Similarity=0.056 Sum_probs=129.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ------NLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN-- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~------g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~-- 95 (442)
++..+-..|...|++++|+..|.++.+. +-.| ...+|..+-.++...+ ++++|.+.|++....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999997743 2222 3456666666787777 899999999987664
Q ss_pred ----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC------CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 96 ----N-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 96 ----g-~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
. -+....+|..+...|...|++++|...+++.. .. +-.| ...++..+-..|.+.|++++|.+++++.
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 12346788899999999999999999999987 32 1123 3467889999999999999999999988
Q ss_pred HHC------------------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013497 164 GLM------------------------------------------------GLSLEQQEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 164 ~~~------------------------------------------------g~~p~~~ty~~li~~~~~~g~~~~a~~ll 195 (442)
... .......++..|...|...|++++|..+|
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 653 11122346777888888899999999998
Q ss_pred HHHHh
Q 013497 196 QKLRS 200 (442)
Q Consensus 196 ~~m~~ 200 (442)
++..+
T Consensus 276 ~~al~ 280 (283)
T 3edt_B 276 DCASR 280 (283)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.51 E-value=5.6e-06 Score=87.48 Aligned_cols=165 Identities=10% Similarity=0.003 Sum_probs=139.3
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN 96 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g 96 (442)
..|+. .|+.|=..|.+.|++++|++.|++..+. .| +..+|+.|=.++...| ++++|.+.|++..+..
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g--------~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQG--------KLQEALMHYKEAIRIS 73 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC
Confidence 45665 8999999999999999999999998765 33 4677777777888888 9999999999987754
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQE 174 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~t 174 (442)
. -+..+|+.+-.+|.+.|++++|++.|++.. +. .|+ ...|+.+-..|.+.|++++|.+.|++..+.. | +...
T Consensus 74 P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a 147 (723)
T 4gyw_A 74 P-TFADAYSNMGNTLKEMQDVQGALQCYTRAI-QI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDA 147 (723)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence 2 257899999999999999999999999987 43 454 5789999999999999999999999988753 4 5678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
|..|...|...|++++|.+.+++..+
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999988887754
No 57
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.41 E-value=3.5e-05 Score=68.63 Aligned_cols=150 Identities=11% Similarity=-0.012 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+..|++..+..-.++...+..+-.++...+ ++++|.+.|+...+.... +..+|
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~-~~~~~ 79 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--------KYKEAADYFDIAIKKNYN-LANAY 79 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTCS-HHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--------cHHHHHHHHHHHHHhCcc-hHHHH
Confidence 666777788899999999999999887654467777766655777777 899999999998876432 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--------RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE---QQ 173 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--------~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~---~~ 173 (442)
..+-..|...|++++|...|++.. .. .|+. ..|..+=..+...|++++|.+.|+...+. .|+ ..
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGI-KA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 999999999999999999999988 43 4543 34777778888999999999999998765 565 45
Q ss_pred HHHHHHHHHHhcCCH
Q 013497 174 EIAALLKVSAETGRV 188 (442)
Q Consensus 174 ty~~li~~~~~~g~~ 188 (442)
.|..+-..|...|..
T Consensus 155 ~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 155 ALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777777766
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.39 E-value=1.3e-05 Score=80.62 Aligned_cols=190 Identities=7% Similarity=-0.017 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDL-TTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~-~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.|..+-..+...|++ ++|++.|++..+.. +-+...|..+-.++...+ ++++|.+.|++..+.. |+..+
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~~~--p~~~~ 172 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKG--------DVTSAHTCFSGALTHC--KNKVS 172 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHTTC--CCHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhC--CCHHH
Confidence 788888889999999 99999999987653 224677887777887777 8999999999998764 77889
Q ss_pred HHHHHHHHHhc---------CCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHc--------CCHHHHHHHHHHHHH
Q 013497 104 VTSVARLAASK---------NDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCEN--------LEAEKAYEVEEHMGL 165 (442)
Q Consensus 104 y~~li~~~~~~---------g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~--------g~~~~A~~l~~~M~~ 165 (442)
+..+-..|... |++++|...|++.. .. .| +...|..+-.+|... |++++|.+.|+...+
T Consensus 173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 99999999999 99999999999988 43 34 467888889999988 999999999999987
Q ss_pred CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhccccCCCcccchhhHHHHHHhc
Q 013497 166 MGLS--LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKN 239 (442)
Q Consensus 166 ~g~~--p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~ 239 (442)
..-. -+...|..+-.+|...|++++|.+.|++.... .|+ ...+..+...+ ... ++..+|+...
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~--~~l-------g~~~eAi~~~ 315 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLL--EFL-------SRLTSLLESK 315 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH--HHH-------HHHHHHHHHT
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH--HHH-------HHHHHHHHHh
Confidence 5320 37889999999999999999999999998765 344 33455555555 222 5666666653
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.38 E-value=2.5e-05 Score=71.21 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS--LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
.|..+-..|.+.|++++|+..|++..+..-.|+ ..+|..+-..+...+ ++++|.+.|+...+... .+..
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~a~~~~~-~~~~ 109 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG--------QDSLAIQQYQAAVDRDT-TRLD 109 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHST-TCTH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhcCc-ccHH
Confidence 778888899999999999999999987432222 344666666777777 89999999999887543 3567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
+|..+-..|...|++++|...|++.. .. .|+ ..+|..+-..+...+++++|.+.|+...+.. +.+...+..+...
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQI-RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARA 185 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGC-CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHh-hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 89999999999999999999999987 43 454 4455555524555679999999999998753 2236777778888
Q ss_pred HHhcCC---HHHHHHHHHHHHhc
Q 013497 182 SAETGR---VEKVYQYLQKLRST 201 (442)
Q Consensus 182 ~~~~g~---~~~a~~ll~~m~~~ 201 (442)
+...|+ .++|...+++..+.
T Consensus 186 ~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHcCcchhhHHHHHHHHHHHHH
Confidence 888888 88888888887664
No 60
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.34 E-value=2.6e-05 Score=66.05 Aligned_cols=149 Identities=6% Similarity=-0.019 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 138 (442)
..|..+-..+...+ ++++|.+.|+++.+.. +.+..++..+...+...|++++|...+++.. ... ..+..
T Consensus 9 ~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~ 77 (186)
T 3as5_A 9 VYYRDKGISHAKAG--------RYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSL-ADA-PDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHT--------CHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHH
T ss_pred HHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHH
Confidence 34444445666666 8999999999886543 3478889999999999999999999999988 432 33567
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhc
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 218 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~ 218 (442)
.+..+...|...|++++|.+.++...... +.+...+..+...+...|++++|.+++++..... ..+...+..+...+
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~- 154 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSY- 154 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHH-
Confidence 88889999999999999999999988763 3467888899999999999999999999987763 23456677777777
Q ss_pred cccC
Q 013497 219 GQKV 222 (442)
Q Consensus 219 ~~~~ 222 (442)
...
T Consensus 155 -~~~ 157 (186)
T 3as5_A 155 -EQM 157 (186)
T ss_dssp -HHT
T ss_pred -HHc
Confidence 444
No 61
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.32 E-value=0.00012 Score=71.24 Aligned_cols=182 Identities=9% Similarity=0.022 Sum_probs=145.3
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhh-HHHHHHHHHHHHhCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSA-LRHGFRVFDQMLSNN 96 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~-~~~a~~l~~~M~~~g 96 (442)
..|+- .|+.+-..+.+.|++++|+..|+++.+.. +-+...|+.+-.++...+ + +++|++.|++..+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g--------~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQ--------KDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcc--------cCHHHHHHHHHHHHHHC
Confidence 44555 88888899999999999999999988653 224566777766777776 7 999999999998865
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
.. +...|+.+-.++...|++++|+..|++.. .. .| +...|..+-.++.+.|++++|++.|+.+.+.... +...|
T Consensus 163 P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal-~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~ 237 (382)
T 2h6f_A 163 PK-NYQVWHHRRVLVEWLRDPSQELEFIADIL-NQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVW 237 (382)
T ss_dssp TT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHH
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHH
Confidence 43 78899999999999999999999999998 43 44 5678999999999999999999999999886533 67889
Q ss_pred HHHHHHHHh-cCCHHHH-----HHHHHHHHhccCCCC-hHHHHHHHHHh
Q 013497 176 AALLKVSAE-TGRVEKV-----YQYLQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 176 ~~li~~~~~-~g~~~~a-----~~ll~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
+.+-..+.+ .|..++| ...+++.... .|+ ...|..+...+
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 999999988 6665777 4777776653 454 45666666666
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.27 E-value=4.7e-05 Score=73.77 Aligned_cols=234 Identities=9% Similarity=-0.031 Sum_probs=155.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-C-----
Q 013497 31 QSCTKSKDLTTAISLYESAHSQ----NLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-P----- 99 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~----g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p----- 99 (442)
..+...|++++|+..|++..+. +-.+ ...+|..+-.++...+ ++++|.+.|++..+.... +
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--------QTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhCccchHH
Confidence 4567889999999999998753 2122 2245555555777777 899999999887652111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCC-CCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFN-VVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLM----GL-S 169 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g~-~ 169 (442)
...+++.+-..|...|++++|...|++.. ... -.++ ..+|..+-..|...|+.++|.+.+++.... +. .
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAY-SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 24678888899999999999999998876 210 0111 147888999999999999999999988762 33 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CChH---HHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccC
Q 013497 170 LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC-VNEE---TGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHG 245 (442)
Q Consensus 170 p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~-p~~~---t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 245 (442)
....++..+-..+.+.|+.++|...+++....... .++. .+..+-..+ ...+.. ..+.+|+..+.
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~--~~~~~~----~~~~~al~~~~----- 330 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLY--LSGPDE----EAIQGFFDFLE----- 330 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TSSCCH----HHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hCCCcH----HHHHHHHHHHH-----
Confidence 34677889999999999999999999887653211 1222 234444444 333211 33555555421
Q ss_pred CccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHc
Q 013497 246 LGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKN 314 (442)
Q Consensus 246 ~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~ 314 (442)
. ....+.....+..+-..+...|+.++|.+.|++.++-.
T Consensus 331 --------------~----------------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 331 --------------S----------------KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp --------------H----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --------------H----------------CcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 0 01112233334444455778899999999999987643
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.22 E-value=1e-05 Score=81.34 Aligned_cols=167 Identities=9% Similarity=-0.065 Sum_probs=133.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDS-ATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.|..+-..|.+.|++++|++.|++..+. .|+...+..+-.++... ......+.|++++|.+.|++..+... -+...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHH
Confidence 8899999999999999999999998876 47766666666677665 00111111399999999999887643 36889
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhHhhCCCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 104 VTSVARLAASK--------NDGDYAFVLIKRMNNEFNVVP----RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 104 y~~li~~~~~~--------g~~~~A~~~~~~m~~~~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
|..+-.+|... |++++|...|++.. .. .| +...|..+-..|...|++++|.+.|++..+..- -+
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 291 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAE-KV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AW 291 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-Hh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CC
Confidence 99999999998 99999999999988 43 45 678899999999999999999999999877532 24
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
...+..+-..+...|+.++|.+.+.++
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567888888898999998888766443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.20 E-value=0.00018 Score=61.46 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
++..|..|=..+...| ++++|.+.|++..+... -+..+|..+...|.+.|++++|...+.... ... .-+
T Consensus 4 ~~~iy~~lG~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~~-~~~ 72 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKG--------DFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFV-VLD-TTS 72 (184)
T ss_dssp CHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-CCC
T ss_pred HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-chh
Confidence 4567777766777777 89999999999887643 368899999999999999999999999987 432 224
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 216 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~ 216 (442)
...+..+-..+...++.+.|.+.+....... +-+...+..+-..+.+.|++++|.+.|++..+.. +-++..+..+-..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA 150 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence 5667777788999999999999999987653 2357788889999999999999999999987652 2245567777666
Q ss_pred hccccCCCcccchhhHHHHHH
Q 013497 217 FSGQKVNGVSCDLGLVKNAVL 237 (442)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~a~~ 237 (442)
+ ...|...-....+++|++
T Consensus 151 ~--~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 151 Y--EGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp H--HHTTCHHHHHHHHHHHHH
T ss_pred H--HHCCCHHHHHHHHHHHHh
Confidence 6 555333233334444443
No 65
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=8.1e-05 Score=69.83 Aligned_cols=145 Identities=10% Similarity=0.012 Sum_probs=109.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 013497 42 AISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYA 120 (442)
Q Consensus 42 A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A 120 (442)
|+..|++..+.+ .++..++..+-.++...| ++++|++++.+-...|.. -+...+..++..+.+.|+.+.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g--------~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILG--------DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC--------CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 788888877665 455555544444677777 899999999987666642 3677888999999999999999
Q ss_pred HHHHHHhHhhCCCCC-----CcccHHHHHHHH--HHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013497 121 FVLIKRMNNEFNVVP-----RLRTYDPALFCF--CENL--EAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (442)
Q Consensus 121 ~~~~~~m~~~~g~~p-----~~~ty~~li~~~--~~~g--~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 191 (442)
.+.+++|. .. .| +..+..-|..++ ...| +..+|+.+|+++.+. .|+..+-..|+.++.+.|++++|
T Consensus 156 ~k~l~~~~-~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 156 STIFDNYT-NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHH-HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHH-hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHH
Confidence 99999998 43 56 355566666663 3334 899999999998654 46655556666688899999999
Q ss_pred HHHHHHHHh
Q 013497 192 YQYLQKLRS 200 (442)
Q Consensus 192 ~~ll~~m~~ 200 (442)
.+.++.+..
T Consensus 231 e~~L~~l~~ 239 (310)
T 3mv2_B 231 QGIVELLLS 239 (310)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 999987654
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.19 E-value=9.4e-05 Score=75.15 Aligned_cols=168 Identities=10% Similarity=0.028 Sum_probs=126.5
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS--LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN 95 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~ 95 (442)
..|+. .|..+...+.+.|++++|..+|+++.+. .|+ ...|..+..+..+.+ .+++|.++|+...+.
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKARED 385 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTC
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhc
Confidence 34553 8888999999999999999999998874 454 247777777666666 899999999998765
Q ss_pred CCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-
Q 013497 96 NVIPNEASVTSVAR-LAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-LSLE- 171 (442)
Q Consensus 96 g~~p~~~ty~~li~-~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-~~p~- 171 (442)
... +...|-.... .+...|+.++|..+|+... +. .| +...|..++..+.+.|+.++|..+|+.....+ ..|+
T Consensus 386 ~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al-~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGL-KK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred cCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHH-HH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 321 2222222221 2346899999999999877 32 34 46788888888999999999999999988763 3332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 172 -QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 172 -~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
...|...+....+.|+.+.+..++.++.+.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 557888888888899999999999888764
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.18 E-value=1.5e-05 Score=77.61 Aligned_cols=242 Identities=9% Similarity=-0.000 Sum_probs=160.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----N 96 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~----g 96 (442)
.+..+-..+...|++++|+..|+++.+.+.. +. ..|..+-..+...| ++++|.+.|++..+. +
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLG--------DYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHcc
Confidence 5666777889999999999999998876321 22 35555655677777 899999999887652 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC----CCC-CCcccHHHHHHHHHHcCC-----------------H
Q 013497 97 V-IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEF----NVV-PRLRTYDPALFCFCENLE-----------------A 153 (442)
Q Consensus 97 ~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~----g~~-p~~~ty~~li~~~~~~g~-----------------~ 153 (442)
- .....++..+-..|...|++++|...+++.. .. +-. ....+|..+-..|...|+ +
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 1 2245678888999999999999999999876 22 111 124578888899999999 9
Q ss_pred HHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCCh----HHHHHHHHHhccccCC
Q 013497 154 EKAYEVEEHMGLM----GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR-CVNE----ETGKIIEDWFSGQKVN 223 (442)
Q Consensus 154 ~~A~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~-~p~~----~t~~~li~~~~~~~~~ 223 (442)
++|.+.+++..+. +-.| ...++..+-..|...|++++|...+++.....- .++. .++..+...+ ...|
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g 277 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH--IFLG 277 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--HHCc
Confidence 9999988876442 2111 234778888899999999999999998765321 1121 1444555555 4442
Q ss_pred CcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhh
Q 013497 224 GVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKAN 303 (442)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a 303 (442)
...-....+++++.... . ..........+..+-..+...|+.++|
T Consensus 278 ~~~~A~~~~~~al~~~~-------------------~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAV-------------------E----------------LGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp CHHHHHHHHHHHHHHHH-------------------H----------------TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHH-------------------H----------------cCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22222222333332210 0 000112344555566667788999999
Q ss_pred HHHHHHHHHH
Q 013497 304 FSEFQDWLEK 313 (442)
Q Consensus 304 ~~~F~~m~~~ 313 (442)
...|++.+..
T Consensus 323 ~~~~~~al~~ 332 (411)
T 4a1s_A 323 IEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 68
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.18 E-value=0.00012 Score=74.37 Aligned_cols=179 Identities=11% Similarity=0.041 Sum_probs=132.3
Q ss_pred HHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHH
Q 013497 25 NFLINLQSCTK-------SKDLT-------TAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFD 90 (442)
Q Consensus 25 ~~~~li~~~~k-------~g~~~-------~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~ 90 (442)
.|......+.+ .|+++ +|..+|++..+.-.+-+...|..+..++...| ++++|.++|+
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g--------~~~~A~~~~~ 345 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM--------KYEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--------CHHHHHHHHH
Confidence 55555555554 68877 89999999876323335788888888888887 8999999999
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHH-HHHHHHcCCHHHHHHHHHHHHHC
Q 013497 91 QMLSNNVIPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPA-LFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 91 ~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~l-i~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
...+. .|+ ...|..++..+.+.|++++|..+|+... .. .|+. ..|-.. ...+...|+.++|..+|+...+.
T Consensus 346 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 346 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99884 454 3589999999999999999999999988 43 3432 222211 12234689999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCC--hHHHHHHHHHh
Q 013497 167 GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV-RCVN--EETGKIIEDWF 217 (442)
Q Consensus 167 g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~-~~p~--~~t~~~li~~~ 217 (442)
. +-+...|..++..+.+.|+.++|..+|++..... ..|+ ...|...+...
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2357889999999999999999999999988763 2222 23555555544
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.12 E-value=7.3e-05 Score=69.64 Aligned_cols=168 Identities=11% Similarity=-0.008 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----N 96 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~----g 96 (442)
.+...-..+.+.|++++|+.+|+++.+... .+ ...|..+-..+...+ ++++|.+.|++.... +
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLH--------DYAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhhccc
Confidence 445556678899999999999999887532 12 355666666777777 899999999886542 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHHHHHcCC-------------------
Q 013497 97 VIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (442)
Q Consensus 97 ~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~------------------- 152 (442)
-.| ...++..+...|...|++++|...+++......-.++ ..++..+-..|...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 222 3567888899999999999999999987621110122 3478888899999999
Q ss_pred -HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 153 -AEKAYEVEEHMGLM----GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 153 -~~~A~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+++|.+.+++.... +-.| ...++..+...+...|++++|...+++....
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999988876432 2111 2346778888899999999999999987653
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.12 E-value=2.9e-05 Score=72.55 Aligned_cols=165 Identities=7% Similarity=-0.070 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
.|+.....|...|++++|.+.|.+..+ .|-.++ ..+|+.+-.+|...| ++++|...|++..+.
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--------NSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHc
Confidence 788888999999999999999998753 233222 467777777888887 899999999876552
Q ss_pred CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHhHhhCCCCCC-------cccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 96 NVIP-NEASVTSVARLAASK-NDGDYAFVLIKRMNNEFNVVPR-------LRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 96 g~~p-~~~ty~~li~~~~~~-g~~~~A~~~~~~m~~~~g~~p~-------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
|-.+ -..+|+.+-..|... |++++|+..|++.. .. .|+ ..+|+.+-..|.+.|++++|.+.|+.....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al-~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAG-EW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2111 145788888999996 99999999999876 32 221 346888899999999999999999999876
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 167 GLSLEQ------QEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 167 g~~p~~------~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...... ..|..+..++...|+.++|...|++...
T Consensus 188 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 433222 2567778889999999999999988654
No 71
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.11 E-value=9.1e-05 Score=69.48 Aligned_cols=127 Identities=12% Similarity=0.008 Sum_probs=96.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC-CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNV-VPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
|...|++..+.+ .++..++-.+-.++...|+.++|++++.+.. ..+- .-+...+..++..|.+.|+.+.|.++++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i-~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGI-DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 678888877665 5666666788899999999999999999986 4331 126788999999999999999999999999
Q ss_pred HHCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 164 GLMGLSL-----EQQEIAALLKVSAE--TG--RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 164 ~~~g~~p-----~~~ty~~li~~~~~--~g--~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+. .| +..+..-|..+++. .| +..+|+.+|+++.+. .|+..+...+..++
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~ 221 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLH 221 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHH
Confidence 775 45 35666777777443 34 899999999999665 46533334444444
No 72
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.10 E-value=6.1e-05 Score=72.70 Aligned_cols=243 Identities=9% Similarity=-0.014 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----N 96 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~----g 96 (442)
.+..+-..+.+.|++++|+..|+++.+.+- .+ ...|..+-..+...+ ++++|...|++.... +
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLH--------DYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHhcc
Confidence 666777788999999999999999887532 23 245666656777777 899999999876542 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHHHHHcCC-------------------
Q 013497 97 VIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (442)
Q Consensus 97 ~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~------------------- 152 (442)
-.| ...++..+-..|...|++++|...+++......-.++ ..++..+-..|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 222 2567888889999999999999999987621100112 3478888899999999
Q ss_pred -HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccC-CCChH----HHHHHHHHhcccc
Q 013497 153 -AEKAYEVEEHMGLM----GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVR-CVNEE----TGKIIEDWFSGQK 221 (442)
Q Consensus 153 -~~~A~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~-~p~~~----t~~~li~~~~~~~ 221 (442)
+++|.+.+++.... +-.| ...+|..+-..+...|++++|...+++.....- .++.. ++..+-..+ ..
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~ 239 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY--IF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH--HH
Confidence 99999998876432 2112 234678888899999999999999998765311 12221 444444445 33
Q ss_pred CCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHH
Q 013497 222 VNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVK 301 (442)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~ 301 (442)
.|...-....+.+++.... . . .........+..+-..+...|+.+
T Consensus 240 ~g~~~~A~~~~~~al~~~~-------------------~---~-------------~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLAR-------------------Q---L-------------KDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHH-------------------H---T-------------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cCChHHHHHHHHHHHHHHH-------------------h---C-------------cCchHHHHHHHHHHHHHHHhCcHH
Confidence 3222112222223322210 0 0 001112445555556677889999
Q ss_pred hhHHHHHHHHHH
Q 013497 302 ANFSEFQDWLEK 313 (442)
Q Consensus 302 ~a~~~F~~m~~~ 313 (442)
+|...|++.+..
T Consensus 285 ~A~~~~~~a~~~ 296 (406)
T 3sf4_A 285 KAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888764
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.09 E-value=0.00016 Score=69.86 Aligned_cols=230 Identities=10% Similarity=-0.000 Sum_probs=152.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----C-CCC-C
Q 013497 32 SCTKSKDLTTAISLYESAHSQNL-RLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN----N-VIP-N 100 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~-~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~----g-~~p-~ 100 (442)
.+...|++++|+..|++..+.-- .++ ..+|..+-.++...+ +++.|...+++..+. + ..+ .
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--------QTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 35678999999999999875321 122 234555545777777 899999998876552 1 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCC
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL-----MGLSLE 171 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~g~~p~ 171 (442)
..+++.+-..|...|++++|.+.|++... ..+-.+ ...+++.+-..|...|+.++|.+.+++... .. +..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhH
Confidence 56788888999999999999999988762 111111 135678888899999999999999998876 33 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC---CC-hHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCc
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC---VN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLG 247 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~---p~-~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 247 (442)
..++..+-..+.+.|+.++|...+++....... |. ...+..+-..+ ...+.. ..+.+|+..+.
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly--~~~~~~----~~~~~al~~~~------- 327 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVY--KETVDE----RKIHDLLSYFE------- 327 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHH--SSSCCH----HHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hCCCcH----HHHHHHHHHHH-------
Confidence 678888999999999999999999988764322 11 22334444444 222111 34556655422
Q ss_pred cccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHH
Q 013497 248 WIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETE-RFAQSVAALAMEREVKANFSEFQDWLE 312 (442)
Q Consensus 248 ~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~-~~~~~I~~~~~~g~~~~a~~~F~~m~~ 312 (442)
. .+ ..+ +.. .+..+-..+...|+.++|.+.|++.++
T Consensus 328 ------------~---~~-------------~~~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 ------------K---KN-------------LHA-YIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp ------------H---TT-------------CHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------h---CC-------------Chh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 00 111 333 333333457778899999999988765
No 74
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.07 E-value=1.9e-05 Score=76.86 Aligned_cols=243 Identities=7% Similarity=-0.053 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
.|..+-..|...|++++|+..|++..+. +-.| ...++..+-..+...| ++++|.+.|++..+.
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG--------RFDEAAICCERHLTLARQL 159 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHh
Confidence 7888889999999999999999987632 2222 2344555555777777 899999999887653
Q ss_pred C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHcCCH
Q 013497 96 N-VIPNEASVTSVARLAASKND-----------------GDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCENLEA 153 (442)
Q Consensus 96 g-~~p~~~ty~~li~~~~~~g~-----------------~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~g~~ 153 (442)
+ ......++..+-..|...|+ +++|.+.+++... ..+-.| ...+|..+-..|...|++
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 1 11234578888899999999 9999999887651 111111 235788888999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----hHHHHHHHHHhccccCC
Q 013497 154 EKAYEVEEHMGLMGL-SLE----QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC-VN----EETGKIIEDWFSGQKVN 223 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~-~p~----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~-p~----~~t~~~li~~~~~~~~~ 223 (442)
++|.+.+++.....- .++ ..++..+...|...|++++|...+++....... .+ ..++..+-..+ ...|
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~~~g 317 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY--TLLH 317 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcC
Confidence 999999998765311 112 237888889999999999999999887653211 11 23444555555 3332
Q ss_pred CcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhh
Q 013497 224 GVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKAN 303 (442)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a 303 (442)
...-....+++++.... . ....+.....+..+-..+...|+.++|
T Consensus 318 ~~~~A~~~~~~al~~~~-------------------~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 318 EFNTAIEYHNRHLAIAQ-------------------E----------------LGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp CHHHHHHHHHHHHHHHH-------------------H----------------HTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHHHH-------------------H----------------CCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 22112222223322210 0 000112344555566667788999999
Q ss_pred HHHHHHHHH
Q 013497 304 FSEFQDWLE 312 (442)
Q Consensus 304 ~~~F~~m~~ 312 (442)
.+.|++.+.
T Consensus 363 ~~~~~~al~ 371 (411)
T 4a1s_A 363 LKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.07 E-value=0.00055 Score=60.93 Aligned_cols=164 Identities=11% Similarity=0.009 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL-RLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~-~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~ 101 (442)
.+-.+-..+.+.|++++|+..|+++.+..- .|. ...+..+-.++...+ ++++|.+.|+...+.... |..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCCcH
Confidence 334445567889999999999999886432 122 245555556777777 899999999998875433 221
Q ss_pred -HHHHHHHHHHH------------------hcCCHHHHHHHHHHhHhhCCCCCCccc-H-----------------HHHH
Q 013497 102 -ASVTSVARLAA------------------SKNDGDYAFVLIKRMNNEFNVVPRLRT-Y-----------------DPAL 144 (442)
Q Consensus 102 -~ty~~li~~~~------------------~~g~~~~A~~~~~~m~~~~g~~p~~~t-y-----------------~~li 144 (442)
.++-.+-.++. ..|+.++|...|++.. +. .|+... + -.+-
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV-RG--YPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-TT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH-HH--CcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333333333 3678999999999998 43 565532 2 1344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 145 FCFCENLEAEKAYEVEEHMGLMGLSLE----QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
..|.+.|++++|...|+.+.+.- |+ ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 56789999999999999998752 33 246788889999999999999999988765
No 76
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.06 E-value=0.00055 Score=75.59 Aligned_cols=253 Identities=9% Similarity=0.087 Sum_probs=136.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 35 KSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 35 k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
..+++++|.++.++.. +..+|..+=.++...| ++++|.+-|..- -|...|.-++..+.+.
T Consensus 1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G--------~~kEAIdsYiKA------dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG--------MVKEAIDSYIKA------DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCC--------CHHHHHHHHHhc------CChHHHHHHHHHHHHc
Confidence 4566777777776542 2455666655666666 777777777542 3566667777777777
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l 194 (442)
|++++|.+++..-. +. .++....+.+..+|++.+++++..... . .|+...|..+-..|-..|++++|..+
T Consensus 1148 GkyEEAIeyL~mAr-k~--~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1148 GNWEELVKYLQMAR-KK--ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred CCHHHHHHHHHHHH-hh--cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 77777777776544 32 344444555777777777766433332 1 23455566666667777777777777
Q ss_pred HHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcCCcccCCccccccceE-EeeeccCC--CCCCCcCC
Q 013497 195 LQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV-VKRGSVDE--SGKCCSCG 271 (442)
Q Consensus 195 l~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~-v~~~~~~~--~g~c~~c~ 271 (442)
|... ..|..+...+ ++.| .+.+|++.....-+-. .|. +.++.+.. ......|+
T Consensus 1218 Y~kA---------~ny~rLA~tL--vkLg-------e~q~AIEaarKA~n~~------aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1218 YNNV---------SNFGRLASTL--VHLG-------EYQAAVDGARKANSTR------TWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhh---------hHHHHHHHHH--HHhC-------CHHHHHHHHHHhCCHH------HHHHHHHHHhhhhHHHHHHHHH
Confidence 7653 3566666666 5542 2333333321100000 110 00000000 00000111
Q ss_pred CcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHcCCcceEEeccchhccccc-cCCCCcChhhHHHHHHHH
Q 013497 272 DQLACVDIDDAETERFAQSVAALAMEREVKANFSEFQDWLEKNANYEAIVDGANIGLYQQN-FTEGGFSVPQLDAVVKKL 350 (442)
Q Consensus 272 ~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~~F~~m~~~~~~~d~vIdg~Nv~~~~~~-~~~~~~~~~~~~~vv~~l 350 (442)
.. +...+ ..+..++.-|-..|..++|+.+|+.-+. +|.++++++..- .--.++..+++.+.++.+
T Consensus 1274 l~---Iiv~~---deLeeli~yYe~~G~feEAI~LlE~aL~--------LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1274 LH---IVVHA---DELEELINYYQDRGYFEELITMLEAALG--------LERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred Hh---hhcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc--------cChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11 12222 3344677778888999999999976654 344454444111 000133567777888888
Q ss_pred HHhcC
Q 013497 351 YERSG 355 (442)
Q Consensus 351 ~~~~~ 355 (442)
.++.+
T Consensus 1340 ~~rin 1344 (1630)
T 1xi4_A 1340 WSRVN 1344 (1630)
T ss_pred HHhcc
Confidence 87743
No 77
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.00 E-value=0.00011 Score=68.40 Aligned_cols=244 Identities=10% Similarity=-0.022 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC-C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-I 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-~ 98 (442)
.|..+-..|...|++++|++.|++..+. +-.|. ..++..+-..+...| ++++|.+.|++..+... .
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--------NFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999986532 22222 345555555777777 89999999988655211 1
Q ss_pred CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHc
Q 013497 99 PN----EASVTSVARLAASKND--------------------GDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCEN 150 (442)
Q Consensus 99 p~----~~ty~~li~~~~~~g~--------------------~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~ 150 (442)
++ ..++..+...|...|+ +++|.+.+++... ..+-.| ...++..+...|...
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 22 4488888899999999 9999999987651 111111 235788888999999
Q ss_pred CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----hHHHHHHHHHhccc
Q 013497 151 LEAEKAYEVEEHMGLM----GLS-LEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC-VN----EETGKIIEDWFSGQ 220 (442)
Q Consensus 151 g~~~~A~~l~~~M~~~----g~~-p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~-p~----~~t~~~li~~~~~~ 220 (442)
|++++|.+.+++.... +.. ....++..+...+...|++++|...+++....... .+ ..++..+...+ .
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~ 274 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY--T 274 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--H
Confidence 9999999999987643 111 11337888888999999999999999887653211 12 22444444445 3
Q ss_pred cCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHH
Q 013497 221 KVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREV 300 (442)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~ 300 (442)
..|...-....+++++.... . ..-.+.....+..+-..+...|+.
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~-------------------~----------------~~~~~~~~~~~~~la~~~~~~g~~ 319 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQ-------------------E----------------LKDRIGEGRACWSLGNAYTALGNH 319 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-------------------H----------------HTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HhcCHHHHHHHHHHHHHHHH-------------------h----------------cCCcHHHHHHHHHHHHHHHHcCCh
Confidence 33222112222223322210 0 000112344555556667788999
Q ss_pred HhhHHHHHHHHHH
Q 013497 301 KANFSEFQDWLEK 313 (442)
Q Consensus 301 ~~a~~~F~~m~~~ 313 (442)
++|.+.|++.+.-
T Consensus 320 ~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 320 DQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.99 E-value=0.00018 Score=73.66 Aligned_cols=150 Identities=12% Similarity=-0.003 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013497 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND 116 (442)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~ 116 (442)
|++++|++.|++..+.. +-+...|..+-..+...+ ++++|.+.|++..+... -+..+|..+-..|...|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMG--------DTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence 45566666666554321 112344444444444444 56666666666554421 245556666666666666
Q ss_pred HHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHH
Q 013497 117 GDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET---GRVEKVY 192 (442)
Q Consensus 117 ~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~---g~~~~a~ 192 (442)
+++|.+.+++.. +. .| +...|..+-..|.+.|+.++|.+.+++..+..- .+...+..+...+... |+.++|.
T Consensus 73 ~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 73 HAEAAVLLQQAS-DA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp HHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred HHHHHHHHHHHH-hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHH
Confidence 666666666655 22 23 234555566666666666666666666554321 1345555566666666 6666666
Q ss_pred HHHHHHHh
Q 013497 193 QYLQKLRS 200 (442)
Q Consensus 193 ~ll~~m~~ 200 (442)
+.+++..+
T Consensus 149 ~~~~~al~ 156 (568)
T 2vsy_A 149 AQVRAAVA 156 (568)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665544
No 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.98 E-value=0.00024 Score=69.14 Aligned_cols=177 Identities=7% Similarity=0.017 Sum_probs=139.4
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKD-LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~-~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.|+.+-..+.+.|+ +++|+..|+++.+..- -+...|+.+-.++...+ ++++|+..|+.+.+... -+..+
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g--------~~~eAl~~~~kal~ldP-~~~~a 202 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLR--------DPSQELEFIADILNQDA-KNYHA 202 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCc-cCHHH
Confidence 88888889999996 9999999999887542 25677777766777777 89999999999988653 37889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHH-cCCHHHH-----HHHHHHHHHCCCCCCHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCE-NLEAEKA-----YEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~-~g~~~~A-----~~l~~~M~~~g~~p~~~ty~ 176 (442)
|..+-.++.+.|++++|+..|+++. .. .| +...|+.+-..|.+ .|..++| ++.|+......- -+...|+
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al-~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~ 278 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL-KE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWN 278 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHH
Confidence 9999999999999999999999998 43 44 55788888889988 6666888 477877766432 2567888
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 177 ALLKVSAETG--RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 177 ~li~~~~~~g--~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+...+.+.| +.++|.+.+.++ .....++..+..+...|
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHH
Confidence 8888888888 689999999887 22233455666777777
No 80
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.98 E-value=0.0001 Score=71.06 Aligned_cols=244 Identities=9% Similarity=-0.047 Sum_probs=159.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI- 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~- 98 (442)
.|..+-..|...|++++|...|++..+ .+-.|. ..++..+-..+...| ++++|...|++..+....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--------NFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhc
Confidence 788888999999999999999998653 232222 344555555777777 899999999887652111
Q ss_pred CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHc
Q 013497 99 PN----EASVTSVARLAASKND--------------------GDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCEN 150 (442)
Q Consensus 99 p~----~~ty~~li~~~~~~g~--------------------~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~ 150 (442)
++ ..++..+-..|...|+ +++|...+++... ..+-.| ...+|..+-..|...
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 12 4588888999999999 9999999887651 111111 235788888999999
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CC----hHHHHHHHHHhccc
Q 013497 151 LEAEKAYEVEEHMGLMG-LSLE----QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC-VN----EETGKIIEDWFSGQ 220 (442)
Q Consensus 151 g~~~~A~~l~~~M~~~g-~~p~----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~-p~----~~t~~~li~~~~~~ 220 (442)
|++++|.+.+++..... -.++ ..+|..+...|...|++++|...+++.....-. .+ ..++..+-..+ .
T Consensus 201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~--~ 278 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTY--T 278 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHH--H
Confidence 99999999999876431 1122 347888888999999999999999987643111 12 22444555555 4
Q ss_pred cCCCcccchhhHHHHHHhcCCcccCCccccccceEEeeeccCCCCCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHH
Q 013497 221 KVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGDQLACVDIDDAETERFAQSVAALAMEREV 300 (442)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~v~~~~~~~~g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~ 300 (442)
..|...-....+.+++.... . ..-.+.....+..+-..+...|+.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~-------------------~----------------~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQ-------------------E----------------LNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHH-------------------H----------------TTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HhCcHHHHHHHHHHHHHHHH-------------------h----------------cCCcHHHHHHHHHHHHHHHHcCCH
Confidence 33222112222223322210 0 000112344455555567788999
Q ss_pred HhhHHHHHHHHHH
Q 013497 301 KANFSEFQDWLEK 313 (442)
Q Consensus 301 ~~a~~~F~~m~~~ 313 (442)
++|.+.|++-++-
T Consensus 324 ~~A~~~~~~al~~ 336 (406)
T 3sf4_A 324 DQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987763
No 81
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.97 E-value=0.00028 Score=65.68 Aligned_cols=168 Identities=6% Similarity=-0.087 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLH----HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI- 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g-~~p~~~----ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~- 98 (442)
.+...+..+.+.|++++|.+++++..+.. ..|+.. .|..+...+...+ .+++|...|++.......
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--------CHHHHHHHHHHHHHHhccc
Confidence 34445788899999999999999987643 223321 2223333555555 799999999998874332
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hC-CCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 013497 99 PN----EASVTSVARLAASKNDGDYAFVLIKRMNN---EF-NVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGL---- 165 (442)
Q Consensus 99 p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~-g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~---- 165 (442)
++ ..+|+.+-..|...|++++|...|++... .. +..|.. .+|..+-..|.+.|++++|.+.+++..+
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33 34789999999999999999999998762 11 222222 4788899999999999999999887653
Q ss_pred CCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 013497 166 MGLSLE-QQEIAALLKVSAETG-RVEKVYQYLQKLRS 200 (442)
Q Consensus 166 ~g~~p~-~~ty~~li~~~~~~g-~~~~a~~ll~~m~~ 200 (442)
.+..+. ..+|..+-.+|.+.| ..++|.+.+++...
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 233333 568888888999999 46999998887643
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.96 E-value=0.00095 Score=60.61 Aligned_cols=170 Identities=8% Similarity=-0.046 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC-CCC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR-LS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-IPN- 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-~p~- 100 (442)
.+-.+-..+.+.|++++|+..|+++.+..-. |. ...+..+-.++...+ ++++|...|+...+... .|.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--------EYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--------cHHHHHHHHHHHHHHCCCCchh
Confidence 5555566778899999999999999875311 11 345555555677777 89999999999887543 222
Q ss_pred HHHHHHHHHHHHh--------cCCHHHHHHHHHHhHhhCCCCCCc-ccH-----------------HHHHHHHHHcCCHH
Q 013497 101 EASVTSVARLAAS--------KNDGDYAFVLIKRMNNEFNVVPRL-RTY-----------------DPALFCFCENLEAE 154 (442)
Q Consensus 101 ~~ty~~li~~~~~--------~g~~~~A~~~~~~m~~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~ 154 (442)
..++..+-.++.. .|++++|...|++.. .. .|+. ... -.+-..|.+.|+++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI-DR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH-HH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-HH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 4566777778888 999999999999988 43 4543 333 34467788999999
Q ss_pred HHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhccCCCCh
Q 013497 155 KAYEVEEHMGLMGLS-L-EQQEIAALLKVSAET----------GRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~-p-~~~ty~~li~~~~~~----------g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
+|...|+......-. | ....+..+..+|.+. |++++|...|++.... .|+.
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 999999999875321 1 245677777778765 8899999999998875 4554
No 83
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.96 E-value=0.00056 Score=63.53 Aligned_cols=167 Identities=7% Similarity=-0.085 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS-L----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-- 97 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-- 97 (442)
.+...+..+...|++++|.+.+.+..+..-..+ . ..+..+-..+...+ .+++|.+.|++..+...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--------CHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHhcC
Confidence 345667788999999999999998776432211 1 11222222455555 89999999998875322
Q ss_pred -CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 013497 98 -IPN--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-----LRTYDPALFCFCENLEAEKAYEVEEHMGLM--- 166 (442)
Q Consensus 98 -~p~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--- 166 (442)
.+. ..+|+.+-..|...|++++|...|++........|+ ..+|+.+-..|.+.|++++|.+.+++....
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 122 458899999999999999999999987511111222 258888999999999999999999887543
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 013497 167 -GLSL-EQQEIAALLKVSAETGRVEKV-YQYLQKLR 199 (442)
Q Consensus 167 -g~~p-~~~ty~~li~~~~~~g~~~~a-~~ll~~m~ 199 (442)
+... -..+|..+-..|.+.|+.++| ...+++-.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2111 156788888999999999999 77676643
No 84
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.94 E-value=0.00054 Score=59.85 Aligned_cols=124 Identities=10% Similarity=-0.008 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT 105 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~ 105 (442)
+..+-..+.+.|++++|+..|++. +.|+...|..+-..+...+ ++++|.+.|++..+.. +.+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~-~~~~~~~~ 75 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILK--------NMTEAEKAFTRSINRD-KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-ccchHHHH
Confidence 334444555666666666666654 2445555555555555555 6666666666655443 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-c----------------ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPR-L----------------RTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~----------------~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.+-..|...|++++|...|++.. .. .|+ . ..+..+-..|.+.|+.++|.+.|+...+
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEAL-IQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHH-Hh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666666666666666655 32 111 1 3444455555555555555555555544
No 85
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.92 E-value=8.1e-05 Score=63.63 Aligned_cols=162 Identities=7% Similarity=0.025 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++...| ++++|...|+...... |+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g--------~~~~A~~~~~~a~~~~--p~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETK--------QFELAQELLATIPLEY--QDNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTT--------CHHHHHHHHTTCCGGG--CCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHhhhcc--CChHHH
Confidence 55566677889999999999999865431 224456666666777787 8999999999875543 344333
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 013497 105 TSVARL-AASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKV 181 (442)
Q Consensus 105 ~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~ 181 (442)
..+... +...+...+|...+++.. .. .|+ ...+..+-..+...|+.++|...|++..+..-.+ +...+..|...
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al-~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQEL-AA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 322211 222233345788888877 32 454 6788888899999999999999999998765332 35678899999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 013497 182 SAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~ 200 (442)
+...|+.++|...+++...
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 9999999999999886643
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.92 E-value=0.00057 Score=72.15 Aligned_cols=163 Identities=11% Similarity=0.060 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-
Q 013497 58 LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR- 136 (442)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~- 136 (442)
+.+|+.|=.++...| ++++|.+.|++..+... -+..+|+.+-.+|.+.|++++|+..|++.. +. .|+
T Consensus 9 a~al~nLG~~~~~~G--------~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l--~P~~ 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQG--------NIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAI-RI--SPTF 76 (723)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTC
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCC
Confidence 456777766888888 99999999999877532 257899999999999999999999999987 43 564
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHH
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIED 215 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~ 215 (442)
...|..+-..|.+.|++++|.+.|++..+..- -+...|+.|-..|.+.|++++|.+.|++..+. .|+ ...+..+..
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhh
Confidence 57899999999999999999999999887532 25778999999999999999999999988764 454 456666766
Q ss_pred HhccccCCCcccchhhHHHHHH
Q 013497 216 WFSGQKVNGVSCDLGLVKNAVL 237 (442)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~ 237 (442)
.+ ...+.........++++.
T Consensus 154 ~l--~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CL--QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HH--HHTTCCTTHHHHHHHHHH
T ss_pred HH--HhcccHHHHHHHHHHHHH
Confidence 66 444333333344444443
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.88 E-value=0.00037 Score=61.36 Aligned_cols=164 Identities=12% Similarity=0.094 Sum_probs=114.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCCCCCCchhhHHHHHHHHHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLS-LHHFNA----------------LLYLCSDSATDPSSKDSALRHGFRVFDQM 92 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~-~~ty~~----------------ll~~~~~~~~~~~~~~~~~~~a~~l~~~M 92 (442)
-..+.+.|++++|+..|++..+. .|+ ...|.. +-.++...| ++++|...|++.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~a 80 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--------NYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 34566899999999999998764 233 233433 444677777 899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCC
Q 013497 93 LSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEA--EKAYEVEEHMGLMGLS 169 (442)
Q Consensus 93 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~--~~A~~l~~~M~~~g~~ 169 (442)
.+... -+..+|..+-..|...|++++|...|++.. .. .|+ ..+|..+-..|...|+. +.+...+.... .
T Consensus 81 l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~ 152 (208)
T 3urz_A 81 LQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKIL-QL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----S 152 (208)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C
T ss_pred HHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----C
Confidence 87643 368899999999999999999999999988 43 454 56777777777665543 34455555443 3
Q ss_pred CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 170 LEQQE--IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 170 p~~~t--y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
|+... +..+-.++...|++++|...|++..+. .|+......+
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 44433 333344455688999999999988754 6776655444
No 88
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.88 E-value=0.00061 Score=60.37 Aligned_cols=136 Identities=6% Similarity=-0.107 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP- 135 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p- 135 (442)
|+..|..+=..+...+ ++++|.+.|+...+....++..++..+-.++...|++++|...|++.. .. .|
T Consensus 6 ~~~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~--~p~ 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAK--------NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KK--NYN 74 (228)
T ss_dssp CHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--TCS
T ss_pred CHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-Hh--Ccc
Confidence 4455555555666666 899999999999887665788888889999999999999999999988 43 45
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ-------QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~-------~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
+...|..+-..|...|+.++|.+.+++..+..- .+. ..|..+-..+...|++++|.+.|++..+. .|+
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 456788899999999999999999999887532 133 45777777888899999999999988764 454
No 89
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.86 E-value=0.00057 Score=53.38 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..+|..+...+...|++++|.++++++. ... ..+..++..+...|.+.|++++|..+++.+.... ..+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 3445555555666666666666666655 221 2234455555566666666666666666655432 224455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 013497 181 VSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~m~~ 200 (442)
.+...|++++|...|++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 66666666666666665544
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00021 Score=66.56 Aligned_cols=163 Identities=9% Similarity=0.019 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhc-CCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRLS-LHHFNALLYLCSDS-ATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p~-~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
+|+.+-..|.+.|++++|+..|++..+ .|-.+. ..+|+.+-.++... + ++++|.+.|++..+....
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--------~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--------DYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998763 222111 34666666677774 7 899999999987653211
Q ss_pred ----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc------cHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 99 ----PN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR------TYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 99 ----p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~------ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
+. ..+|+.+-..|.+.|++++|...|++.. ......... +|..+..++...|+.++|...|++..+.
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 228 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE- 228 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 11 3578889999999999999999999988 432221111 4677778899999999999999987653
Q ss_pred CCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 013497 168 LSLEQ------QEIAALLKVSA--ETGRVEKVYQYLQKL 198 (442)
Q Consensus 168 ~~p~~------~ty~~li~~~~--~~g~~~~a~~ll~~m 198 (442)
.|+. ..+..|+.++. ..+++++|...|+++
T Consensus 229 -~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 229 -DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp ----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred -CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 3332 23445566664 355677777776544
No 91
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.83 E-value=0.012 Score=58.79 Aligned_cols=160 Identities=6% Similarity=-0.073 Sum_probs=85.8
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 25 NFLINLQSCTK----SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 25 ~~~~li~~~~k----~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
.+..|=..|.. .++.++|+..|++..+.| +...+..|-.+|..+. ...++.++|.+.|+...+.| +
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~----g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGD----GVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHHCC---C
Confidence 33344445555 667777777777766655 2344444444444311 00115666666666665553 4
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCH
Q 013497 101 EASVTSVARLAAS----KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 101 ~~ty~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
..++..|-..|.. .++.++|.+.|+... +.| +...+..+-..|.. .++.++|.+.|+...+.| +.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 255 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NS 255 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 5555556666655 566666666666655 433 34445555555554 556666666666655543 23
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 013497 173 QEIAALLKVSAE----TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 173 ~ty~~li~~~~~----~g~~~~a~~ll~~m~~~ 201 (442)
..+..|-..|.. .++.++|.++|++..+.
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 344444444444 55666666666555443
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.83 E-value=0.00025 Score=65.93 Aligned_cols=156 Identities=10% Similarity=-0.042 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSV 107 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~l 107 (442)
.+-..+.+.|++++|...|++..+.. +-+...+..|-.++...| ++++|.++|+..... .|+.......
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g--------~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALN--------RSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTT--------CHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCC--------CHHHHHHHHHhCchh--hcchHHHHHH
Confidence 33344455555555555555554331 112333444444444554 555555555554332 2332222111
Q ss_pred H-HHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 013497 108 A-RLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS-LEQQEIAALLKVSAE 184 (442)
Q Consensus 108 i-~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~-p~~~ty~~li~~~~~ 184 (442)
. ..+.+.++.++|...+++.. .. .| +...+..+-..|...|+.++|...|.+.....-. .+...+..|...+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al-~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQV-AE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHH-hc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 1 12344445555555555544 22 22 3344555555555555555555555555543211 113445555555555
Q ss_pred cCCHHHHHHHHHH
Q 013497 185 TGRVEKVYQYLQK 197 (442)
Q Consensus 185 ~g~~~~a~~ll~~ 197 (442)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 5555555554443
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.81 E-value=0.0018 Score=56.43 Aligned_cols=115 Identities=10% Similarity=-0.022 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|.+.|++. +.|+..+|..+...|.+.|++++|...|++.. ... ..+...|..+-..|...|++++|.+.|
T Consensus 21 ~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 94 (213)
T 1hh8_A 21 DWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL 94 (213)
T ss_dssp CHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcccHHHHHHHH
Confidence 899999999876 57789999999999999999999999999987 432 335678889999999999999999999
Q ss_pred HHHHHCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 161 EHMGLMGL--------------SL-EQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 161 ~~M~~~g~--------------~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+...+..- .| ....+..+-.++.+.|+.++|...|++....
T Consensus 95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99987531 12 2367888889999999999999999998765
No 94
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.81 E-value=0.015 Score=58.05 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=79.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS-- 113 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~-- 113 (442)
.++.++|+..|.+..+.|. +..+..|=..|..+. ...++.++|.+.|++..+.| +...+..|-..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~----g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGE----GVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS----SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 6667777777766665542 334444433444410 00115666666666665544 34455555555555
Q ss_pred --cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 013497 114 --KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE--- 184 (442)
Q Consensus 114 --~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~--- 184 (442)
.+++++|...|+... ..| +...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..|..
T Consensus 126 g~~~~~~~A~~~~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAA-EQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp SSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC
Confidence 556666666666655 433 33444555555554 556666666666655543 44455555555555
Q ss_pred -cCCHHHHHHHHHHHHhc
Q 013497 185 -TGRVEKVYQYLQKLRST 201 (442)
Q Consensus 185 -~g~~~~a~~ll~~m~~~ 201 (442)
.++.++|.++|++-.+.
T Consensus 199 ~~~~~~~A~~~~~~a~~~ 216 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS 216 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHC
Confidence 55566666665555443
No 95
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.78 E-value=0.00049 Score=53.77 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=80.7
Q ss_pred CCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHH
Q 013497 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEK 155 (442)
Q Consensus 76 ~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~ 155 (442)
+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+++. ... ..+..++..+...|...|++++
T Consensus 19 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAWYNLGNAYYKQGDYDE 95 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhcCHHH
Confidence 345678999999999988754 3467889999999999999999999999988 432 3356788899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 156 AYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
|...++.+..... .+...+..+-..+.
T Consensus 96 A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 96 AIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 9999999876532 23444554444443
No 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.78 E-value=0.0037 Score=69.18 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|.-++..|.+.|++++|.+.|...++.. +++...+.+..+|.+.+ ++++..+.. -.|+...|
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~--------rleele~fI-------~~~n~ad~ 1198 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN--------RLAELEEFI-------NGPNNAHI 1198 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhc--------CHHHHHHHH-------hCCCHHHH
Confidence 67779999999999999999998877554 23222333555666655 454322221 12344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL------------------- 165 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~------------------- 165 (442)
..+-..|...|++++|..+|.... .|..+..+|++.|++++|.+.+++-..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA~----------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhh----------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence 555566666666666666665421 455566666666666655555443311
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHhcC
Q 013497 166 -----MGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNG 240 (442)
Q Consensus 166 -----~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (442)
.++..+...+..++..|-+.|.+++|..+++.-.... .-....|+-+-..+ ++. ..+++.|+++.+.
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy--aKy-----~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY--SKF-----KPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH--HhC-----CHHHHHHHHHHHH
Confidence 0123355567788888888888888888885443221 12223444454555 221 2266666666532
Q ss_pred CcccCCccccccceEEeeeccCCC---CCCCcCCCcccccCCCHHHHHHHHHHHHHHhHHHHHHhhHH
Q 013497 241 GGWHGLGWIGQGKWVVKRGSVDES---GKCCSCGDQLACVDIDDAETERFAQSVAALAMEREVKANFS 305 (442)
Q Consensus 241 ~~~~~~~~~~~~~w~v~~~~~~~~---g~c~~c~~~l~~~~l~~~d~~~~~~~I~~~~~~g~~~~a~~ 305 (442)
+.+... -.|. +...|..++.=|.+.|+.+.|..
T Consensus 1341 ------------------~rini~k~~r~~e--------------~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1341 ------------------SRVNIPKVLRAAE--------------QAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ------------------HhcccchHhHHHH--------------HHHHHHHHHHHHHhcccHHHHHH
Confidence 111111 1233 88889999999999999998874
No 97
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.74 E-value=0.00029 Score=60.85 Aligned_cols=159 Identities=9% Similarity=-0.057 Sum_probs=110.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----NNVIP-NEASVTSVA 108 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~----~g~~p-~~~ty~~li 108 (442)
...|++++|.++++..... ......++..+-..+...+ ++++|.+.|++..+ .+..| ...++..+-
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMD--------RFDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4578999999955555431 1234556666666777777 89999999988765 22222 356788888
Q ss_pred HHHHhcCCHHHHHHHHHHhHhh---CCCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHH
Q 013497 109 RLAASKNDGDYAFVLIKRMNNE---FNVVP--RLRTYDPALFCFCENLEAEKAYEVEEHMGLM----GLSL-EQQEIAAL 178 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~---~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~l 178 (442)
..|...|++++|...+++.... .+-.| ...++..+-..+...|++++|...+++.... +-.+ -..++..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 8999999999999999987622 22111 1345788888899999999999999887642 2111 12346778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 013497 179 LKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
-..+...|+.++|.+.+++....
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHH
Confidence 88889999999999999877553
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.72 E-value=0.00032 Score=65.83 Aligned_cols=165 Identities=9% Similarity=0.021 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
.|+.....|...|++++|...|.+..+. |-.+. ..+|+.+-.+|...+ ++++|.+.|++..+.
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ--------RMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHHHHc
Confidence 7888889999999999999999986532 21111 346777767777777 788888888765432
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC----CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 013497 96 NVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEF----NVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM--- 166 (442)
Q Consensus 96 g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--- 166 (442)
|-.+ -..+++.+-..|.. |++++|+..|++.. .. +-.+ ...+|+.+-..|.+.|++++|.+.|++....
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2111 14577888888888 99999999999876 21 1100 1357888899999999999999999988653
Q ss_pred -CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 167 -GLSLEQ-QEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 167 -g~~p~~-~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
+..+.. ..+..+..++...|+.++|...|++..
T Consensus 188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 222222 256677777888899999999999876
No 99
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.70 E-value=0.001 Score=55.14 Aligned_cols=94 Identities=11% Similarity=-0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|...|.+..+.. +.+..++..+-..+...+ ++++|.+.|++..+.. +.+..+|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELD-KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-cccHHHH
Confidence 34444445555555555555555544321 112333333333333333 4445555444443322 1233444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+...+...|++++|...|++..
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444444443
No 100
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.69 E-value=0.0016 Score=53.98 Aligned_cols=128 Identities=9% Similarity=-0.035 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT 139 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t 139 (442)
.+..+-..+...+ ++++|...|+...+.. +.+..++..+...+...|++++|...+++.. ... ..+...
T Consensus 15 ~~~~~a~~~~~~~--------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~ 83 (166)
T 1a17_A 15 ELKTQANDYFKAK--------DYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHTT--------CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHH
T ss_pred HHHHHHHHHHHcc--------CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cccHHH
Confidence 3444444555666 8999999999987753 2367888999999999999999999999987 432 234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA--ALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~--~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
|..+-..|...|+.++|.+.|++.....- .+...+. .+...+.+.|++++|...+....
T Consensus 84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888899999999999999999876532 2344443 33444777899999998887654
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.66 E-value=0.00052 Score=66.29 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
+++.+-..|...|++++|+..|.+..+. +-.+ ...+|..+=.++...| ++++|.+.|++..+.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--------~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--------QYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhh
Confidence 7888889999999999999999987632 2111 1135555555777777 899999999987761
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---CCCCCCcccHHHHHHHHHHcCC---HHHHHHHHHHHHHCCC
Q 013497 96 NV-IPNEASVTSVARLAASKNDGDYAFVLIKRMNNE---FNVVPRLRTYDPALFCFCENLE---AEKAYEVEEHMGLMGL 168 (442)
Q Consensus 96 g~-~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~M~~~g~ 168 (442)
+. +....++..+-..|.+.|++++|...+++.... .+-......++.+-..|...|+ +++|..+++.. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 33 334678899999999999999999999987611 1111112335677778888888 77788777765 33
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 169 SLE-QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 169 ~p~-~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.|+ ...+..|-..|.+.|+.++|.+.+++...
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333 34667788899999999999999987754
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.64 E-value=0.0089 Score=52.49 Aligned_cols=165 Identities=10% Similarity=-0.025 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..|=..|...+++++|+..|++..+.|. +..+..|=.++...+. ..+.++|.+.|+...+.| +..++
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~---~~a~~~lg~~y~~~g~-----~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGD---GDALALLAQLKIRNPQ-----QADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---HHHHHHHHHHTTSSTT-----SCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHCC---CHHHH
Confidence 555566667778999999999999988773 4555555445544321 126999999999998776 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhHhhCCCC-CCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 013497 105 TSVARLAAS----KNDGDYAFVLIKRMNNEFNVV-PRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLSLEQQEI 175 (442)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty 175 (442)
..|-..|.. .++.++|++.|++.. +.|.. .+...+..|-..|.. .++.++|.+.|+...+.+ .+...+
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~ 165 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAE 165 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHH
Confidence 778788877 889999999999987 55421 016778888888888 889999999999998762 244466
Q ss_pred HHHHHHHHhc-C-----CHHHHHHHHHHHHhccC
Q 013497 176 AALLKVSAET-G-----RVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 176 ~~li~~~~~~-g-----~~~~a~~ll~~m~~~~~ 203 (442)
..|-..|... | +.++|..+|++-.+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 6677777653 3 89999999999887764
No 103
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.62 E-value=0.00062 Score=57.75 Aligned_cols=135 Identities=7% Similarity=0.025 Sum_probs=100.8
Q ss_pred CCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHH-HHHcCCH
Q 013497 76 SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFC-FCENLEA 153 (442)
Q Consensus 76 ~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~-~~~~g~~ 153 (442)
+...|++++|...|+...+.. +.+..+|..+-..|...|++++|...|++.. .. .| +...+..+... |...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQAL-QL--RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHhcCCc
Confidence 455678899999999877654 3477899999999999999999999999987 43 33 45567777777 7789998
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 154 --EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 154 --~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
++|...++......- .+...+..+...|...|++++|...|.+.... .|+......++..+
T Consensus 96 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESI 158 (177)
T ss_dssp CCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHH
Confidence 999999999887642 25678888889999999999999999998765 34333333444444
No 104
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.61 E-value=0.001 Score=64.10 Aligned_cols=164 Identities=9% Similarity=0.014 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ----NLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----- 94 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~----g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~----- 94 (442)
+++.+=..|...|++++|++.|.+..+. +-.+ ...+++.|=.++...+ ++++|.+.|++..+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--------DDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhh
Confidence 8888999999999999999999986642 2211 1234445544677777 89999999998776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHHcCC---HHHHHHHHHHHHHCCC
Q 013497 95 NNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLE---AEKAYEVEEHMGLMGL 168 (442)
Q Consensus 95 ~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~---~~~A~~l~~~M~~~g~ 168 (442)
.. +....++..+-..|.+.|+.++|...+++......-.++ ...++.+-..|...|+ +++|...++. .+.
T Consensus 256 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~ 331 (378)
T 3q15_A 256 VP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNL 331 (378)
T ss_dssp CG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTC
T ss_pred CC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCC
Confidence 33 333788899999999999999999999998722111111 2345555566667788 7777777776 333
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 169 SLE-QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 169 ~p~-~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.|+ ...+..+-..|.+.|+.++|...|++...
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333 34566788889999999999999987754
No 105
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.56 E-value=0.0017 Score=50.98 Aligned_cols=115 Identities=12% Similarity=0.013 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+...|++++|+..|++..+.. +.+...+..+-.++...+ ++++|.+.|+...+.. +.+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~ 83 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLG--------NYAGAVQDCERAICID-PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhh--------chHHHHHHHHHHHhcC-ccCHHHH
Confidence 56666666666777777777777655432 123444544444555555 5666666666655432 2235556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLE 152 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~ 152 (442)
..+...|.+.|++++|...|++.. .. .| +...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKAL-EL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-hc--CccchHHHHHHHHHHHHHhc
Confidence 666666666666666666666655 32 22 33344444444444443
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.56 E-value=0.0008 Score=55.84 Aligned_cols=134 Identities=8% Similarity=-0.002 Sum_probs=100.3
Q ss_pred CCchhhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCH
Q 013497 76 SSKDSALRHGFRVFDQMLSNNVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEA 153 (442)
Q Consensus 76 ~~~~~~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~ 153 (442)
+...|.+++|++.|+..... .| +...+-.+-..|.+.|++++|.+.|++.. +. .| +..+|..+-..|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCch
Confidence 34557999999999887432 23 23456678889999999999999999988 43 45 567899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhccCCCC-hHHHHHHHHHh
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQY-LQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~l-l~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
++|...|+...+..- -+...|..+-..|.+.|+.++|.+. +++..+. .|+ +..|......+
T Consensus 82 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 82 DKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHH
Confidence 999999999887532 2577889999999999998876655 4655543 454 44555444444
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.55 E-value=0.00094 Score=70.18 Aligned_cols=187 Identities=10% Similarity=-0.096 Sum_probs=136.6
Q ss_pred HhcCCHHHHHHHHHHHHh------CCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHS------QNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTS 106 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~------~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~ 106 (442)
...|++++|++.|++..+ ....| +...|..+-.++...| ++++|.+.|++..+... -+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~a~~~ 472 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLG--------DVAKATRKLDDLAERVG-WRWRLVWY 472 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcC--------CHHHHHHHHHHHhccCc-chHHHHHH
Confidence 778999999999999871 11223 4456666656777777 89999999999887542 36788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET 185 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 185 (442)
+-.+|.+.|++++|...|++.. +. .| +...|..+-.+|.+.|++++ .+.|++..+..- -+...|..+-.++.+.
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al-~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVL-DT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH-HH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHc
Confidence 9999999999999999999987 43 45 45778889999999999999 999999887542 2567889999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCCh-HHHHHHHHHhccccCCC-cccchhhHHHHHHh
Q 013497 186 GRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWFSGQKVNG-VSCDLGLVKNAVLK 238 (442)
Q Consensus 186 g~~~~a~~ll~~m~~~~~~p~~-~t~~~li~~~~~~~~~~-~~~~~~~~~~a~~~ 238 (442)
|+.++|.+.|++..+. .|+. ..+..+..++ ...+. ...+.+.+++|...
T Consensus 548 g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPPT--SRHFTTARLTSAVTL--LSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp TCHHHHHHHHHTSCTT--STTHHHHHHHHHHHT--C-------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc--CcccHHHHHHHHHHH--HccCCCCCCCHHHHHHHHHH
Confidence 9999999999876543 4553 3444444444 32211 11223556666554
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.55 E-value=0.0053 Score=58.62 Aligned_cols=167 Identities=13% Similarity=0.008 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--CCH-HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLR--LSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~--p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
+++.+-..+...|++++|...|++..+ .+.. |.. .++..+-.++...| ++++|.+.+++......
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA--------RLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHhh
Confidence 355566667777888888887777543 2222 222 23333334555666 78888888877654321
Q ss_pred C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHH-----HHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 98 I----PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYD-----PALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 98 ~----p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~-----~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
. ....+|..+...+...|++++|...+++.. ...-.++. ..+. ..+..+...|+.++|...++......
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 1 123566777777788888888888887765 22111111 1121 12233667788888888877765432
Q ss_pred CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 168 LSL---EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 168 ~~p---~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
..+ ....+..+...+...|+.++|...+++...
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 123456666777778888888877776643
No 109
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.53 E-value=0.0056 Score=58.44 Aligned_cols=167 Identities=12% Similarity=-0.051 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C--CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR--L--SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~--p--~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
.+..+-..+...|++++|...+++..+..-. + ...+|..+-.++...| ++++|.+.+++.......++
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~l~~a~~~~~~~~ 208 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARG--------DLDNARSQLNRLENLLGNGK 208 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhccC
Confidence 6777888899999999999999997643211 1 2345666655677777 89999999998765321211
Q ss_pred --HHHHH----HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHC----C
Q 013497 101 --EASVT----SVARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGLM----G 167 (442)
Q Consensus 101 --~~ty~----~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g 167 (442)
..... ..+..+...|+.++|...+++.. ...-.+. ...+..+...+...|+.++|.++++..... |
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 287 (373)
T 1hz4_A 209 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 11111 23345789999999999999887 4321111 124567778899999999999999887542 3
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 168 LSLEQQ-EIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 168 ~~p~~~-ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
..++.. .+..+-..+...|+.++|...+.+...
T Consensus 288 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 288 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 322332 566677788899999999999987654
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.52 E-value=0.00052 Score=57.03 Aligned_cols=140 Identities=9% Similarity=-0.016 Sum_probs=101.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLH-HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARL 110 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~ 110 (442)
.+...|++++|++.|...... .|+.. .+-.|=.+|...+ ++++|.+.|++..+... -+..+|..+-..
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~--------~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 74 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAK--------EYDLAKKYICTYINVQE-RDPKAHRFLGLL 74 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 345568899999999887543 23222 2223334777777 89999999999887543 378899999999
Q ss_pred HHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 013497 111 AASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEV-EEHMGLMGLSL-EQQEIAALLKVSAETGR 187 (442)
Q Consensus 111 ~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l-~~~M~~~g~~p-~~~ty~~li~~~~~~g~ 187 (442)
|.+.|++++|...|++.. +. .|+ ...|..+-..|.+.|+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 75 ~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 75 YELEENTDKAVECYRRSV-EL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHcCchHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999988 43 564 56788888999999999877665 4666553 34 45566665555555553
No 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.52 E-value=0.0023 Score=50.27 Aligned_cols=82 Identities=9% Similarity=-0.036 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|.+.|++..... +.+..++..+...+...|++++|...+++.. ... ..+...+..+...|.+.|+.++|...|
T Consensus 27 ~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CID-PAYSKAYGRMGLALSSLNKHVEAVAYY 103 (131)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hcC-ccCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555544332 1234445555555555555555555555544 221 112334444445555555555555555
Q ss_pred HHHHH
Q 013497 161 EHMGL 165 (442)
Q Consensus 161 ~~M~~ 165 (442)
+....
T Consensus 104 ~~~~~ 108 (131)
T 2vyi_A 104 KKALE 108 (131)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.47 E-value=0.003 Score=64.57 Aligned_cols=130 Identities=8% Similarity=-0.072 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..|.+.|++++|++.|++..+.. +-+...|..+-.++...+ ++++|.+.|++..+.. +-+..+|
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~-p~~~~~~ 94 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQ--------RHAEAAVLLQQASDAA-PEHPGIA 94 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCCHHHH
Confidence 88888999999999999999999988653 234667777767888888 8999999999987764 2367899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHc---CCHHHHHHHHHHHHHCC
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCEN---LEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~---g~~~~A~~l~~~M~~~g 167 (442)
..+-..|.+.|++++|.+.|++.. +. .| +...+..+...+... |+.++|.+.+++..+.+
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAH-QL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999987 43 34 457788899999999 99999999999987654
No 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.46 E-value=0.0034 Score=49.59 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-.++...+ ++++|.+.|++..+.. +.+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLL--------EFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTT--------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhC-CCchHHH
Confidence 77777888888888888888888876542 224555655555666666 7888888887776643 2356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+...|.+.|++++|...|++..
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777788888888888887766
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.45 E-value=0.0037 Score=57.93 Aligned_cols=144 Identities=8% Similarity=-0.039 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccH
Q 013497 61 FNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY 140 (442)
Q Consensus 61 y~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty 140 (442)
+..+-..+...| ++++|.+.|++..+... -+...+..+...|.+.|++++|...+++.. .. .|+....
T Consensus 120 ~~~~a~~~~~~g--------~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~ 187 (287)
T 3qou_A 120 XAQQAMQLMQES--------NYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQ--DQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHTT--------CHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GG--GCSHHHH
T ss_pred HHHHHHHHHhCC--------CHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hh--hcchHHH
Confidence 333334566666 89999999999877543 367889999999999999999999999887 33 5654433
Q ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCC-CChHHHHHHHHHh
Q 013497 141 DPAL-FCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRC-VNEETGKIIEDWF 217 (442)
Q Consensus 141 ~~li-~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~-p~~~t~~~li~~~ 217 (442)
.... ..+...++.++|.+.+++..... +.+...+..+-..+...|+.++|...|.+.....-. .+...+..+...|
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2222 23667788888999998887753 236778889999999999999999999999875311 1245677777777
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.44 E-value=0.0022 Score=50.70 Aligned_cols=97 Identities=14% Similarity=0.019 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
+...|..+...+.+.|++++|...|++.. .. .| +...+..+...|...|++++|.+.+++..... ..+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAI-KR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHH-TT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 44555555556666666666666666555 22 22 34455555555666666666666666555432 1234555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 013497 179 LKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...+.+.|++++|.+.|++...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666666666666665544
No 116
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.44 E-value=0.0037 Score=49.06 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGL--SLE----QQE 174 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~--~p~----~~t 174 (442)
..+|..+...+...|++++|...|++.. ... ..+...+..+...|...|++++|...++....... .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3567778888999999999999999987 432 33567788888999999999999999998876521 223 677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 216 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~ 216 (442)
|..+...+...|++++|.+.|++.... .|++.....+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 888889999999999999999998875 4566555544433
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.38 E-value=0.0031 Score=59.97 Aligned_cols=143 Identities=10% Similarity=-0.127 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..|.+.|++++|+..|++..+..-.... . ..+.+.++- .+ ...+|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~---------~~~~~~~~~-~~-------~~~~~ 199 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F---------SNEEAQKAQ-AL-------RLASH 199 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C---------CSHHHHHHH-HH-------HHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C---------ChHHHHHHH-HH-------HHHHH
Confidence 7888888999999999999999998754321110 0 001111111 11 13455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE 184 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~ 184 (442)
..+-.+|.+.|++++|+..+++.. ... ..+...|..+-.+|...|++++|...|+...+..- -+...+..+...+.+
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKAL-ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 666666677777777777776665 321 22445666666667777777777777776655421 245566666666666
Q ss_pred cCCHHHH-HHHHHHHH
Q 013497 185 TGRVEKV-YQYLQKLR 199 (442)
Q Consensus 185 ~g~~~~a-~~ll~~m~ 199 (442)
.|+.+++ ..++..|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666 33445543
No 118
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0086 Score=48.25 Aligned_cols=99 Identities=10% Similarity=-0.036 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE 174 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t 174 (442)
.+...+..+...+...|++++|...|++.. . ..|+ ...|..+-..|...|++++|.+.++...... ..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQAL-G--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-T--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-H--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 467788889999999999999999999988 4 3576 6788888999999999999999999987653 225778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
|..+-.++...|+.++|...|++....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888899999999999999999988764
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.34 E-value=0.0036 Score=59.57 Aligned_cols=126 Identities=10% Similarity=-0.003 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 138 (442)
..|..+=..+...+ ++++|.+.|++..+....... . ..+.+.++ ..+ ...
T Consensus 148 ~~~~~~g~~~~~~g--------~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~-~~~--------~~~ 197 (336)
T 1p5q_A 148 TIVKERGTVYFKEG--------KYKQALLQYKKIVSWLEYESS------------F-SNEEAQKA-QAL--------RLA 197 (336)
T ss_dssp HHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHH-HHH--------HHH
T ss_pred HHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHH-HHH--------HHH
Confidence 44554544566666 899999999987664322110 0 11222211 111 246
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHHHHh
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 217 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li~~~ 217 (442)
.|..+-.+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|...|++..+. .|+ ...+..+...+
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 78889999999999999999999998764 236788999999999999999999999998765 344 44555555444
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.33 E-value=0.0015 Score=55.50 Aligned_cols=127 Identities=11% Similarity=-0.042 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYL-CSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.+..+-..+.+.|++++|+..|++..+. .|+...+..+..+ +.... ....|...|+...+... -+...
T Consensus 42 a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~al~~~P-~~~~~ 110 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA--------AESPELKRLEQELAANP-DNFEL 110 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH--------TSCHHHHHHHHHHHHST-TCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc--------ccchHHHHHHHHHHhCC-CCHHH
Confidence 7888888999999999999999987644 3344433332212 11111 12246788888776432 25788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
+..+-..+...|++++|...|++.. .. .|+ ...+..+...|...|+.++|...|+....
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l-~~--~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNIL-KV--NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH-Hh--CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999988 43 554 45788999999999999999999987643
No 121
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.31 E-value=0.0053 Score=49.05 Aligned_cols=100 Identities=13% Similarity=0.001 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 99 PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
.+...|..+-..+...|++++|...|+... ... ..+...|..+-..|...|++++|...++......- .+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 467888999999999999999999999987 432 23467888899999999999999999999887542 257788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 013497 179 LKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
-.++...|++++|...|.+....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.30 E-value=0.0039 Score=47.86 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=81.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
+...+..+...+...|++++|...|++.. ... ..+...+..+...|...|++++|...++...+.. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAI-KLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34567788888999999999999999987 431 2356778888889999999999999999987753 22577888889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 013497 180 KVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.++...|+.++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999988754
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.28 E-value=0.0013 Score=55.68 Aligned_cols=122 Identities=7% Similarity=-0.016 Sum_probs=92.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 013497 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARL-A 111 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~ 111 (442)
+...|++++|+..|.+..+.. +.+...|..+-.++...+ ++++|...|+...+... .+...+..+... +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQN--------DYSNSLLAYRQALQLRG-ENAELYAALATVLY 89 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 345788999999999877543 235667777767777777 89999999999877542 366777888888 7
Q ss_pred HhcCCH--HHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 112 ASKNDG--DYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 112 ~~~g~~--~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
...|++ ++|...|++.. .. .| +...+..+...|...|+.++|...|+......
T Consensus 90 ~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKAL-AL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HhcCCcchHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 789998 99999999987 43 34 45678888889999999999999999988753
No 124
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.28 E-value=0.0052 Score=64.20 Aligned_cols=180 Identities=7% Similarity=-0.048 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCCCCCchhhHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL---------RLS------------LHHFNALLYLCSDSATDPSSKDSALR 83 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~---------~p~------------~~ty~~ll~~~~~~~~~~~~~~~~~~ 83 (442)
.|-..+...-+.|++++|.++|+++.+... .|+ ...|-..+.+..+.+ .++
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~--------~l~ 451 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ--------GLA 451 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH--------CHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC--------CHH
Confidence 567788888899999999999999875310 142 235666677666655 799
Q ss_pred HHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHH
Q 013497 84 HGFRVFDQMLSN-N-VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEE 161 (442)
Q Consensus 84 ~a~~l~~~M~~~-g-~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 161 (442)
.|..+|+...+. + ..+......+.|.-.+ .++.+.|..+|+... +. +.-+...+...+......|+.+.|..+|+
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~L-k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGL-KY-FATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHH-HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHH-HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999876 3 2344444444444222 345999999999987 43 22344456788888888999999999999
Q ss_pred HHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 162 HMGLMGLSL--EQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 162 ~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
........+ ....|..+++.=.+.|+.+.+..+..++.+. .|+......+.+-|
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 988764322 3467888898888999999999999999887 57766777777777
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.27 E-value=0.013 Score=51.43 Aligned_cols=157 Identities=13% Similarity=-0.021 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 013497 40 TTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKN---- 115 (442)
Q Consensus 40 ~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g---- 115 (442)
.+|++.|.+..+.| ++.++..|=..+...+ ++++|.+.|+...+.| +...+..|-..|.. +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~--------~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSG--------DYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCC
Confidence 35778888888775 4556666655666666 8999999999998876 56677777777777 6
Q ss_pred CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cC
Q 013497 116 DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGLS-LEQQEIAALLKVSAE----TG 186 (442)
Q Consensus 116 ~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~~-p~~~ty~~li~~~~~----~g 186 (442)
+.++|.+.|+... +.| +...+..|-..|.. .++.++|.+.|+...+.|.. .+...+..|-..|.. .+
T Consensus 68 ~~~~A~~~~~~A~-~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 68 DYPQARQLAEKAV-EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp CHHHHHHHHHHHH-HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred CHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 8999999999987 655 56677777777776 88999999999999877632 126677888888888 88
Q ss_pred CHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 187 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 187 ~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+.++|..+|++-.+. ..++..+..|-..|
T Consensus 144 d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL--SRTGYAEYWAGMMF 172 (212)
T ss_dssp CHHHHHHHHHHHHHT--SCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 999999999998776 23444455555555
No 126
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.27 E-value=0.086 Score=51.66 Aligned_cols=180 Identities=8% Similarity=-0.082 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C---CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ-----N---LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~-----g---~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~- 95 (442)
.||.|=..+...|+.++|++.|++..+. + -.-...+|+.+-.+|...| ++++|...|++..+.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--------~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--------RLSDVQIYVDKVKHVC 124 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHh
Confidence 7999988999999999999999986531 1 2234578888877888887 899998888876541
Q ss_pred ----C-CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHhHhhCCCCCCcc-cHHHHHHH---HHHcCCHHHHHHHHHHH
Q 013497 96 ----N-VIP-NEASVTSVARLAAS--KNDGDYAFVLIKRMNNEFNVVPRLR-TYDPALFC---FCENLEAEKAYEVEEHM 163 (442)
Q Consensus 96 ----g-~~p-~~~ty~~li~~~~~--~g~~~~A~~~~~~m~~~~g~~p~~~-ty~~li~~---~~~~g~~~~A~~l~~~M 163 (442)
+ ..+ ...+|+.+-.++.+ .+++++|.+.|++.. . +.|+.. .+..+... +...++.++|++.++..
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal-~--~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL-E--KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH-H--HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 1 112 23455554444444 346889999998877 3 356543 23322222 44567777788777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 164 GLMGLSLEQQEIAALLKVSAE----TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+.. +.+...+..+...+.. .|+.++|.+++++..... ..+...+..+-..|
T Consensus 202 l~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~ 257 (472)
T 4g1t_A 202 IRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFY 257 (472)
T ss_dssp HHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred hhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHH
Confidence 6542 1234445444444433 456677777777665432 22334455555555
No 127
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.26 E-value=0.002 Score=49.08 Aligned_cols=99 Identities=7% Similarity=-0.100 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLS-LEQQEIAALL 179 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~-p~~~ty~~li 179 (442)
..++..+...+...|++++|...|++.. ... ..+...|..+-..|...|++++|.+.++...+..-. .+...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAI-QLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 4456677788899999999999999987 432 235577888888999999999999999998875311 1477888888
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhc
Q 013497 180 KVSAET-GRVEKVYQYLQKLRST 201 (442)
Q Consensus 180 ~~~~~~-g~~~~a~~ll~~m~~~ 201 (442)
..+.+. |+.++|.+.+.+....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 999999 9999999999988765
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.26 E-value=0.0022 Score=60.06 Aligned_cols=158 Identities=10% Similarity=0.060 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRL-SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
+|+.+-..|.+.|++++|+..|++..+ .|-.. -..+++.+-.++.. + ++++|.+.|++..+.
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g--------~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-L--------DLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-T--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-C--------CHHHHHHHHHHHHHHHHhC
Confidence 888888999999999999999998653 22211 12455555556666 6 899999999886542
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---CCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 96 NVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNNE---FNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 96 g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
|-.+ -..+++.+-..|.+.|++++|+..|++.... .+..+. ..++..+...+...|+.++|...|++.. . .|
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p 225 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IP 225 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--ST
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CC
Confidence 2111 1467888999999999999999999987621 111111 1356667777888899999999999987 3 33
Q ss_pred C---H---HHHHHHHHHHHhcCCHHHHHHHH
Q 013497 171 E---Q---QEIAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 171 ~---~---~ty~~li~~~~~~g~~~~a~~ll 195 (442)
+ . .....++.++ ..|+.+.+.++.
T Consensus 226 ~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~ 255 (307)
T 2ifu_A 226 GFSGSEDCAALEDLLQAY-DEQDEEQLLRVC 255 (307)
T ss_dssp TSTTSHHHHHHHHHHHHH-HTTCHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 2 1 2345556655 678877766643
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.26 E-value=0.0024 Score=50.22 Aligned_cols=106 Identities=8% Similarity=0.001 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC--CCC--
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV--IPN-- 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~--~p~-- 100 (442)
.|..+-..+...|++++|...|.+..+.. +.+...+..+-..+...+ ++++|...|+....... .++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHhhccccchhHH
Confidence 77888889999999999999999987653 335666777766777777 89999999998876432 222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHH
Q 013497 101 --EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDP 142 (442)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~ 142 (442)
..+|..+...|...|++++|.+.|++.. .. .|+......
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~ 117 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AE--HRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--CCCHHHHHH
Confidence 6778888888999999999999998887 43 455433333
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.24 E-value=0.0055 Score=49.02 Aligned_cols=99 Identities=12% Similarity=-0.004 Sum_probs=58.6
Q ss_pred CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 20 PNPET--NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 20 ~~p~~--~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
..|+. .+...=..|.+.|++++|++.|++..+.. +-+...|..+-.++...+ ++++|.+.|+...+...
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLM--------EFQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhc--------cHHHHHHHHHHHHHhhh
Confidence 34554 56666666667777777777777655432 224455555544555555 66666666666555322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.+..+|..+-.+|...|++++|.+.|++..
T Consensus 79 -~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 79 -KFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 245566666666666666666666666655
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.23 E-value=0.0041 Score=51.76 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL-HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
..+.+.+.+...+.+.+|++ +.|+. ..+..+=..+...| ++++|.+.|+....... -+...
T Consensus 11 ~~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al~~~P-~~~~~ 72 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKG--------RIEEAEVFFRFLCIYDF-YNVDY 72 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHH
Confidence 55666666666665555422 22322 22333323555566 78999999988877542 36778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
|..+-.+|...|++++|...|++.. .. .| +...|..+-.+|.+.|+.++|.+.|+...+.. |+..
T Consensus 73 ~~~lg~~~~~~g~~~~Ai~~~~~al-~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 73 IMGLAAIYQIKEQFQQAADLYAVAF-AL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH-hh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 8888888889999999999998887 43 44 45678888888889999999999988887653 5543
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.22 E-value=0.0035 Score=52.23 Aligned_cols=102 Identities=9% Similarity=-0.062 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
...+..+-..+.+.|++++|...|+... .. .| +...|..+-.+|...|++++|.+.|+......-. +...|..+-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC-IY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 4567777888999999999999999988 43 45 5677888889999999999999999999875422 467888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.+|.+.|+.++|...|++.... .|+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 9999999999999999998775 35543
No 133
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.0014 Score=68.75 Aligned_cols=147 Identities=7% Similarity=-0.096 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|++.|+++.+.. .-+...|..+=.++...+ ++++|.+.|++..+... -+...|
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l~P-~~~~~~ 504 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTG--------DYDSATKHFTEVLDTFP-GELAPK 504 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHST-TCSHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CChHHH
Confidence 78888889999999999999999988643 224566666656777777 89999999999877543 256788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE-QQEIAALLKVS 182 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~li~~~ 182 (442)
..+-.+|.+.|++++ .+.|++.. +. .| +...|..+-.+|.+.|+.++|.+.|++..+. .|+ ...|..+..++
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al-~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVW-ST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChHH-HHHHHHHH-Hh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHH
Confidence 899999999999999 99999987 43 34 4577889999999999999999999987654 465 45666666676
Q ss_pred HhcCC
Q 013497 183 AETGR 187 (442)
Q Consensus 183 ~~~g~ 187 (442)
...+.
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 55444
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.16 E-value=0.0048 Score=50.94 Aligned_cols=98 Identities=10% Similarity=-0.065 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
+...+..+-..+.+.|++++|...|+... .. .| +...|..+-.+|...|++++|...|+......- .+...|..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l 95 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALC-VL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH-Hc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHH
Confidence 44567778888999999999999999987 43 34 567788888899999999999999999877532 256778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 013497 179 LKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
-.+|...|+.++|...|++....
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999987654
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.0071 Score=47.79 Aligned_cols=98 Identities=9% Similarity=-0.061 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
...|..+-..+.+.|++++|...|++.. ... ..+...|..+-.+|.+.|++++|...++...+..- .+...|..+-.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence 3456677778899999999999999987 431 23567888899999999999999999999887542 25778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 013497 181 VSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~m~~~ 201 (442)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999887654
No 136
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.15 E-value=0.088 Score=47.25 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC----cccHHHHHHHHHH-----
Q 013497 81 ALRHGFRVFDQMLSNNVIP-N-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR----LRTYDPALFCFCE----- 149 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p-~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ty~~li~~~~~----- 149 (442)
++++|.+.|+...+..... . ...+..+-.+|.+.|++++|...|+... .. .|+ ...+..+-.++.+
T Consensus 30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~--~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI-QI--YQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HH--CCCCchhHHHHHHHHHHHHHhcccc
Confidence 7999999999987754221 1 5677888889999999999999999988 43 343 2345566667777
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 150 ---NLEAEKAYEVEEHMGLMGLSLE-QQEI-----------------AALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 150 ---~g~~~~A~~l~~~M~~~g~~p~-~~ty-----------------~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.|+.++|...|++..... |+ .... ..+-..|.+.|++++|...|++....
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA 177 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999987653 32 1222 34466778889999999988887764
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.15 E-value=0.0089 Score=47.77 Aligned_cols=101 Identities=8% Similarity=-0.065 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
..+...=..|.+.|++++|++.|++.. +.. +.+...|..+-.+|.+.|++++|.+.|+...+..- .+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAV-KRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHH
Confidence 345556677889999999999999987 431 33567888888999999999999999999877532 257788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
+...|++++|.+.|++..+. .|+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHCCCHHHHHHHHHHHHHH--CcCC
Confidence 99999999999999988764 4543
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.12 E-value=0.0063 Score=50.77 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
+...|..+-..+.+.|++++|+..|++.. .. .| +...|..+-.+|.+.|++++|...|+...+..- -+...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQAL-SI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 45677888889999999999999999987 43 34 567888899999999999999999999887642 257788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 013497 179 LKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
-.+|...|++++|...|++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 139
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.12 E-value=0.018 Score=53.07 Aligned_cols=119 Identities=13% Similarity=0.019 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCC-CCc----ccHHHHHHHHHHc
Q 013497 81 ALRHGFRVFDQMLSNNV-IPNE----ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV-PRL----RTYDPALFCFCEN 150 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~-~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~----~ty~~li~~~~~~ 150 (442)
++++|.+++++..+... .|+. ..|..+...+...|++++|...|++.. ..... ++. .+|+.+-..|...
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~ 168 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAEN 168 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHc
Confidence 79999999999876432 2332 234456667777889999999999987 43222 232 2688888999999
Q ss_pred CCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 151 LEAEKAYEVEEHMGL----M-GLSLE-QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 151 g~~~~A~~l~~~M~~----~-g~~p~-~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
|++++|.+.|+...+ . +..+. ..+|..+...|.+.|++++|...+++..+
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999998873 1 22222 23778888899999999999999887654
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.12 E-value=0.0059 Score=49.67 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
...+..+-..+.+.|++++|...|+... .. .| +...|..+-.+|.+.|++++|...|+......- -+...|..+-
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALC-ML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHH-Hh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 3455566778889999999999999987 43 34 556778888889999999999999999887642 2556777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 013497 180 KVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
.+|...|++++|...|++....
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999887654
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.11 E-value=0.0087 Score=49.32 Aligned_cols=94 Identities=6% Similarity=-0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|++..... +.+...|..+-.++...+ ++++|.+.|+....... -+..+|
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p-~~~~~~ 92 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMG--------QYDLAIHSYSYGAVMDI-XEPRFP 92 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHST-TCTHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhcCC-CCchHH
Confidence 44445555555566666666655554332 123334443333444444 55555555555544321 133445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|...|++++|...|+...
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555544
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.017 Score=44.16 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc
Q 013497 58 LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (442)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 137 (442)
...+..+-..+...+ ++++|.+.|+...... +.+...+..+...+...|++++|...+++.. ... ..+.
T Consensus 4 ~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVG--------NIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLK-PDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCH
T ss_pred HHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH-HhC-cccH
Confidence 345555556666666 8999999999987754 2367888999999999999999999999987 432 2346
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
..+..+...|...|+.++|.+.++...+..
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 778888999999999999999999987653
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.10 E-value=0.0094 Score=48.46 Aligned_cols=94 Identities=7% Similarity=-0.071 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|++..... +.+...|..+-.++...+ ++++|...|+....... -+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~~~ 89 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLG--------LYEQALQSYSYGALMDI-NEPRFP 89 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCTHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhcCC-CCcHHH
Confidence 44455555666666666666666655432 123344444444555555 66666666666655432 234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|...|++++|...|+...
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556666666666666666666655
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.08 E-value=0.0076 Score=45.72 Aligned_cols=95 Identities=9% Similarity=-0.026 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~t 103 (442)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.++...+ ++++|.+.|++..+.... .+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLE--------RYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCcccchHHH
Confidence 55566666777777777777777766542 124455555555555555 677777777776654321 14666
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHhH
Q 013497 104 VTSVARLAASK-NDGDYAFVLIKRMN 128 (442)
Q Consensus 104 y~~li~~~~~~-g~~~~A~~~~~~m~ 128 (442)
+..+...+.+. |++++|.+.++...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 67777777777 77777777777766
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.07 E-value=0.0045 Score=53.09 Aligned_cols=133 Identities=8% Similarity=-0.130 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS----QNLRLS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~----~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
.++.+-..+...|++++|+..|++..+ .|..|. ..+++.+-..+...| ++++|.+.|++..+.
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--------NWDAARRCFLEERELLASL 99 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHc
Confidence 888899999999999999999999764 233222 344555545677777 899999999876552
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCC-CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 96 NVIP--NEASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVV-PRLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 96 g~~p--~~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
+-.| ...++..+-..+...|++++|...+++... ..+-. .-..++..+-..|...|++++|.+.+++...
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2122 245678888899999999999999988751 11111 1123467788889999999999998877643
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.06 E-value=0.0041 Score=50.68 Aligned_cols=133 Identities=11% Similarity=-0.031 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHhh---C
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PN----EASVTSVARLAASKNDGDYAFVLIKRMNNE---F 131 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~~~~~m~~~---~ 131 (442)
++..+-..+...+ ++++|.+.|++..+.... ++ ..++..+-..|...|++++|...+++.... .
T Consensus 11 ~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLG--------NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4444444666666 899999999887653211 12 257888889999999999999999987621 1
Q ss_pred CCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 132 NVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM----GLSL-EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 132 g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+-.+ ...++..+-..|...|++++|.+.+++.... +..+ ...++..+-..+...|+.++|.+.+++..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111 1456778888899999999999999887543 2111 234677788888999999999999987654
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.06 E-value=0.0036 Score=51.01 Aligned_cols=133 Identities=10% Similarity=-0.125 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC----
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL-RLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN---- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~-~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~---- 95 (442)
++..+-..+...|++++|+..|.+..+..- .++ ..++..+-..+...+ ++++|.+.|++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--------EFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHh
Confidence 788888899999999999999998764311 111 134555555677777 899999999986552
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 96 NVIP-NEASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 96 g~~p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
+-.+ ...++..+-..+...|++++|...+++... ..+-.+ ...++..+-..|...|+.++|.+.+++..+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111 145778888899999999999999988751 111111 135678888899999999999999988654
No 148
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.05 E-value=0.022 Score=44.68 Aligned_cols=97 Identities=14% Similarity=-0.041 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc----cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR----TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE----QQEIAA 177 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~ 177 (442)
.+...+...|++++|...|++.. .. .|+.. .+..+-.+|.+.|++++|...|+...... |+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFL-EL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH-HH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 34566778999999999999987 43 34443 67777888999999999999999987753 33 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCChHH
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVNEET 209 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t 209 (442)
+-.++.+.|+.++|...|++.... .|+...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 111 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ--YPGSDA 111 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTSHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCChH
Confidence 888899999999999999998765 355443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.00 E-value=0.013 Score=46.78 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMG--LSLE----QQE 174 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g--~~p~----~~t 174 (442)
.++.-+=..+.+.|++++|++.|++.. +. .| +...|+.+-.+|.+.|++++|.+.++...+.. ..++ ..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAI-EL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 345556677888999999999999887 43 44 45678888889999999999999988876531 1222 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 175 IAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 175 y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
|..+-.++...|++++|.+.|++-... .|++.+...|
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 666777888899999999999887653 5677665544
No 150
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.023 Score=55.87 Aligned_cols=153 Identities=10% Similarity=-0.089 Sum_probs=89.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASK- 114 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~- 114 (442)
.++.++|.++|++..... +.+..++..+-..+...+ .+++|.+.|++..+... -+..++..+-..|...
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~ 295 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKD--------EPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKV 295 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcC--------chHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 345666777776655432 234445555555666666 67777777777665432 2344454444443221
Q ss_pred ------------------CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--H
Q 013497 115 ------------------NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ--E 174 (442)
Q Consensus 115 ------------------g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~--t 174 (442)
+..+.|...++... ... ..+..++..+-..|...|++++|.+.|+...+....|... .
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKAD-EAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHC------CHHHHHHHHHHHHHHHHHHH-HHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh-hcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 22455666666655 321 2345678888888999999999999999988765443321 2
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHh
Q 013497 175 IAALLK-VSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 175 y~~li~-~~~~~g~~~~a~~ll~~m~~ 200 (442)
+..+.. .....|+.++|...+.+...
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 222222 23467889999888877654
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.019 Score=45.20 Aligned_cols=94 Identities=5% Similarity=0.001 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-.++...+ ++++|.+.|+...+... -+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~~p-~~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLM--------SFPEAIADCNKAIEKDP-NFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCC-CcHHHH
Confidence 34444444555555555555555544321 112333433333444444 45555555554444321 134444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|...|++++|...|++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 444445555555555555554443
No 152
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.95 E-value=0.0066 Score=63.45 Aligned_cols=166 Identities=8% Similarity=-0.057 Sum_probs=117.7
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC------
Q 013497 25 NFLINLQSCTKSKDLTTAI-SLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV------ 97 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~-~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~------ 97 (442)
.|-....-+-+.|+.++|. ++|++.... ++.+...|-..+.+....+ .+++|.++|+.+.....
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~--------~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNT--------KIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444455678888997 999998753 3445555666666777777 89999999999876420
Q ss_pred ---CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC--CCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 98 ---IPN------------EASVTSVARLAASKNDGDYAFVLIKRMNNEF--NVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 98 ---~p~------------~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
.|+ ..+|...++..-+.|..+.|..+|.... .. ...+.+....+.|.-. ..++.+.|..+|
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~-~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~if 493 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR-RLKKLVTPDIYLENAYIEYH-ISKDTKTACKVL 493 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHH
Confidence 142 3468888888889999999999999987 43 1222233333333322 235699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
+...+. ..-+...|...++.....|+.+.|..+|++.....
T Consensus 494 e~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 494 ELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 998876 33456677788888888999999999999887654
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.93 E-value=0.017 Score=46.03 Aligned_cols=100 Identities=10% Similarity=-0.061 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC
Q 013497 56 LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (442)
Q Consensus 56 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 135 (442)
.+...|..+-..+...+ ++++|...|+....... .+...|..+-..|...|++++|...++... ... ..
T Consensus 7 ~~~~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~-p~ 75 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGR--------KYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRAL-ELD-GQ 75 (137)
T ss_dssp CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TT
T ss_pred ccHHHHHHHHHHHHHhC--------cHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-ch
Confidence 35666766666777777 89999999999877643 367899999999999999999999999988 432 22
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
+...|..+-.+|...|++++|...|+.....
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4678888999999999999999999987653
No 154
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.92 E-value=0.061 Score=47.30 Aligned_cols=130 Identities=10% Similarity=0.030 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc----cHHHHHHHHHH-----
Q 013497 81 ALRHGFRVFDQMLSNNVI-PN-EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR----TYDPALFCFCE----- 149 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~-p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----ty~~li~~~~~----- 149 (442)
++++|...|+.+.+.... |. ...+..+..+|.+.|++++|...|++.. +. .|+.. .+-.+-.++.+
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~--~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RL--NPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 899999999999875432 22 3577788899999999999999999988 43 45543 23333333333
Q ss_pred -------------cCCHHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHH
Q 013497 150 -------------NLEAEKAYEVEEHMGLMGLSLEQ-QEI-----------------AALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 150 -------------~g~~~~A~~l~~~M~~~g~~p~~-~ty-----------------~~li~~~~~~g~~~~a~~ll~~m 198 (442)
.|+.++|...|+...+.. |+. ..+ -.+-..|.+.|++++|...|+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 578999999999998752 332 111 23445678899999999999998
Q ss_pred HhccCCCCh----HHHHHHHHHh
Q 013497 199 RSTVRCVNE----ETGKIIEDWF 217 (442)
Q Consensus 199 ~~~~~~p~~----~t~~~li~~~ 217 (442)
.+. .|+. ..+..+..++
T Consensus 174 l~~--~p~~~~~~~a~~~l~~~~ 194 (225)
T 2yhc_A 174 LRD--YPDTQATRDALPLMENAY 194 (225)
T ss_dssp HHH--STTSHHHHHHHHHHHHHH
T ss_pred HHH--CcCCCccHHHHHHHHHHH
Confidence 875 4543 2344555555
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.91 E-value=0.029 Score=46.54 Aligned_cols=94 Identities=12% Similarity=-0.046 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...+ ++++|...|++..+... -+...|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~p-~~~~~~ 82 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASG--------QHEKAAEDAELATVVDP-KYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCC-CCHHHH
Confidence 77777788888888888888888876543 124566666666666666 78888888888776542 257778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|.+.|++++|...|++..
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 888888888888888888888776
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.067 Score=42.73 Aligned_cols=93 Identities=9% Similarity=-0.044 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
.+..+-..+.+.|++++|+..|++..+. .|+ ...|..+-..+...+ ++++|.+.|+...+.. +.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLE--------DYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHhhC-ccC
Confidence 7888888889999999999999988764 455 455555555666666 7888888888776643 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
...+..+..+|...|++++|...|++..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777788888888888888888776
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.89 E-value=0.019 Score=49.49 Aligned_cols=154 Identities=7% Similarity=-0.087 Sum_probs=94.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-C---C--------
Q 013497 33 CTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-P---N-------- 100 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p---~-------- 100 (442)
....|+++.|.+.|+.-.+... -....+..+-..+...+ ++++|.+.|++..+.... | .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKN--------EINEAIVKYKEALDFFIHTEEWDDQILLDKKK 84 (198)
T ss_dssp --------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 3444555555555543221100 01233334434555666 899999999998874322 2 1
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 013497 101 ---EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAA 177 (442)
Q Consensus 101 ---~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~ 177 (442)
..+|..+-.+|.+.|++++|+..++... ... ..+...|..+-.+|...|++++|.+.|+...+..- -+...+..
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 161 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVL-KID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNS 161 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHH
Confidence 2788888999999999999999999987 431 33567888888999999999999999999876531 24566667
Q ss_pred HHHHHHhcCCHHHHH-HHHHHH
Q 013497 178 LLKVSAETGRVEKVY-QYLQKL 198 (442)
Q Consensus 178 li~~~~~~g~~~~a~-~ll~~m 198 (442)
+..++...++.+++. ..+..|
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 162 YELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666655554 344444
No 158
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.88 E-value=0.3 Score=48.14 Aligned_cols=160 Identities=11% Similarity=0.014 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSK---DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g---~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.+..|-..|.+.| +.++|++.|.+..+.|. ++...+..|-.+|..+. ...++.++|.+.|+... .| +.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~----~~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDAT----LGTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGG----GSSCCHHHHHHHHHHHG-GG---ST
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCC----CCCCCHHHHHHHHHHHc-CC---CH
Confidence 5555666677778 88888888888887774 34444344444444431 11126888888888875 33 33
Q ss_pred HHHHHHHHH-H--HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHH
Q 013497 102 ASVTSVARL-A--ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENL-----EAEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 102 ~ty~~li~~-~--~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~M~~~g~~p~~~ 173 (442)
..+..|-.. | ...++.++|.+.|++.. +.| +...+..|-..|. .| +.++|.+.|+... .| +..
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~ 319 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVA 319 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHH
Confidence 444444444 3 45788888888888877 655 4556666666665 55 8888888888766 33 555
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 013497 174 EIAALLKVSAE----TGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 174 ty~~li~~~~~----~g~~~~a~~ll~~m~~~~ 202 (442)
.+..|-..|.. ..+.++|..+|++-.+.|
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 66666666655 337888888888877665
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.86 E-value=0.068 Score=49.15 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCC-CC
Q 013497 63 ALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE-----ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV-PR 136 (442)
Q Consensus 63 ~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~-----~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~ 136 (442)
..+..+...+ ++++|.+.+++..+.....+. ..+..+...+...|++++|+..+++.. ..... .+
T Consensus 80 ~~~~~~~~~~--------~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 150 (293)
T 2qfc_A 80 DQVIMLCKQK--------RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGID 150 (293)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSC
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCc
Confidence 3444455555 899999999987765433211 234445667788899999999999876 32111 11
Q ss_pred ----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc----
Q 013497 137 ----LRTYDPALFCFCENLEAEKAYEVEEHMGLM-GLSLE-----QQEIAALLKVSAETGRVEKVYQYLQKLRSTV---- 202 (442)
Q Consensus 137 ----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-g~~p~-----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~---- 202 (442)
..+|+.+-..|...|++++|.+.|++.... ...|+ ..+|+.+-..|.+.|++++|...+++.....
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 347888999999999999999999988632 11122 2588889999999999999999999875432
Q ss_pred CCCC-hHHHHHHHHHh
Q 013497 203 RCVN-EETGKIIEDWF 217 (442)
Q Consensus 203 ~~p~-~~t~~~li~~~ 217 (442)
.... ..++..+-..+
T Consensus 231 ~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 231 SMALIGQLYYQRGECL 246 (293)
T ss_dssp BCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 1111 34555555555
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.86 E-value=0.0016 Score=51.21 Aligned_cols=82 Identities=5% Similarity=-0.068 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNV--IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAY 157 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~ 157 (442)
++++|...|++..+.+. +-+..+|..+-..|...|++++|...|++.. +. .| +...+..+-.+|.+.|+.++|.
T Consensus 5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQ--FPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555544331 1223445555555555555555555555554 22 22 2344555555555555555555
Q ss_pred HHHHHHHH
Q 013497 158 EVEEHMGL 165 (442)
Q Consensus 158 ~l~~~M~~ 165 (442)
+.++....
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.77 E-value=0.02 Score=49.32 Aligned_cols=130 Identities=12% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC---C-----------HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNL-RL---S-----------LHHFNALLYLCSDSATDPSSKDSALRHGFRVF 89 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~-~p---~-----------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~ 89 (442)
.+..+-..+.+.|++++|+..|++..+..- .| . ...|..+-.++...+ ++++|...|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~ 111 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--------DYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence 566777788899999999999999876421 12 1 255665555777777 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHH-HHHHHHHHC
Q 013497 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAY-EVEEHMGLM 166 (442)
Q Consensus 90 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~-~l~~~M~~~ 166 (442)
+...+.. +.+..+|..+-.+|...|++++|...|++.. .. .| +...+..+-..+...++.+++. ..|..|...
T Consensus 112 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 112 SKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA-SL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9987763 3477889999999999999999999999987 43 45 4456666767777777666665 445555443
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.75 E-value=0.016 Score=53.45 Aligned_cols=94 Identities=10% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...+ ++++|.+.|+...+.. +-+...+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELD-GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhC-CCCHHHH
Confidence 67777888999999999999999987652 225666776666777777 8999999999987653 2367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|...|++++|...|++..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999998876
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.74 E-value=0.011 Score=54.58 Aligned_cols=62 Identities=10% Similarity=-0.144 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLE--QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+..+=.++...|++++|+..|++.......|. ......+-.++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33334444455555555555554443222132 112333334444555555555555555543
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.74 E-value=0.002 Score=50.60 Aligned_cols=103 Identities=15% Similarity=-0.098 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHHHhHhhCCC-CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 013497 113 SKNDGDYAFVLIKRMNNEFNV-VP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEK 190 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~~~g~-~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 190 (442)
..|++++|+..|++.. ..+. .| +...|..+-..|.+.|++++|.+.|+...+..-. +...+..+-.++.+.|+.++
T Consensus 2 ~~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHH
Confidence 4688999999999988 5421 13 4577888999999999999999999999876432 57788889999999999999
Q ss_pred HHHHHHHHHhcc-CCCChHHHHHHHHHh
Q 013497 191 VYQYLQKLRSTV-RCVNEETGKIIEDWF 217 (442)
Q Consensus 191 a~~ll~~m~~~~-~~p~~~t~~~li~~~ 217 (442)
|...|++..... -.|+...|...+..|
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999876642 223333555666666
No 165
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.70 E-value=0.036 Score=48.28 Aligned_cols=135 Identities=12% Similarity=0.032 Sum_probs=94.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVA 108 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li 108 (442)
+-..|.+.|++++|+..|++..+.. +-+...|..+-.++...| ++++|.+.|++..+... -+..+|..+-
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~P-~~~~a~~~lg 129 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRG--------QEKDALRMYEKILQLEA-DNLAANIFLG 129 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence 7788999999999999999988653 225667777766777777 89999999999887643 3677888888
Q ss_pred HHHHhcCCH--HHHHHHHHHhHhhCCCCCCcc--cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 109 RLAASKNDG--DYAFVLIKRMNNEFNVVPRLR--TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 109 ~~~~~~g~~--~~A~~~~~~m~~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..|...|.. +.+...+.... .|+.. .+..+-.++...|+.++|...|++..+ +.|+......|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 130 NYYYLTAEQEKKKLETDYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 887666543 34455554443 33332 233334455668999999999999875 4677655444433
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.70 E-value=0.023 Score=45.26 Aligned_cols=103 Identities=8% Similarity=-0.062 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-- 137 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-- 137 (442)
++..|=..+.+.+ ++++|++.|++..+.. +-+..+|+.+-.+|.+.|++++|++.+++.. +. .|+.
T Consensus 10 a~~~lG~~~~~~~--------~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al-~~--~~~~~~ 77 (127)
T 4gcn_A 10 AEKDLGNAAYKQK--------DFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV-EV--GRETRA 77 (127)
T ss_dssp HHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--HHHTTC
T ss_pred HHHHHHHHHHHcC--------CHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-Hh--Ccccch
Confidence 3334434555556 8999999999987754 2367889999999999999999999999876 32 2322
Q ss_pred ------ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 138 ------RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 138 ------~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
.+|..+=.+|...|++++|.+.|+..... .||..+..
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 35666667788899999999999987663 46655443
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.62 E-value=0.017 Score=45.66 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVS 182 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~ 182 (442)
+-.+-..+.+.|++++|...|+... .. .| +...|..+-.++...|+.++|...|+...+..- -+...+..+-.++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al-~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVC-QK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3445567888999999999999987 43 45 567777888889999999999999999877532 2567788888899
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~ 200 (442)
...|+.++|...|++..+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.051 Score=52.69 Aligned_cols=162 Identities=10% Similarity=-0.042 Sum_probs=113.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C---------------HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLRL-S---------------LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~p-~---------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~ 94 (442)
..+.+.|++++|++.|.++.+..-.. + ..++..|..+|...| ++++|.+++.....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~--------~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG--------AKDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHH
Confidence 34678899999999999987543211 1 123666677888888 89999999988755
Q ss_pred C-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHh---hCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 95 N-NVIPNE----ASVTSVARLAASKNDGDYAFVLIKRMNN---EFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 95 ~-g~~p~~----~ty~~li~~~~~~g~~~~A~~~~~~m~~---~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
. +..++. .+.+.+-..+...|+.++|.+++.+... ..+..+ ...++..+...|...|++++|..++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 2 111222 1222333344457889999999887651 122222 245788899999999999999999988754
Q ss_pred C--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 166 M--GL--SL-EQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 166 ~--g~--~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
. +. .| ...+|..++..|...|++++|..++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3 21 12 245788899999999999999999988754
No 169
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.58 E-value=0.026 Score=51.99 Aligned_cols=98 Identities=7% Similarity=-0.126 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE--QQEIAALLKVS 182 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~li~~~ 182 (442)
-.+...+...|++++|.++|+.+. .. .|+....-.+-..+.+.+++++|...|+...... .|. ...+..|=.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~-~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAP-VA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSC-CT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-hc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 345566778888888888888776 43 3544344444456778888888888887544321 111 23566677788
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCC
Q 013497 183 AETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
...|++++|...|++-......|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~ 205 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEA 205 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTT
T ss_pred HHCCCHHHHHHHHHHHhcCCCCcc
Confidence 889999999999998875433254
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.55 E-value=0.007 Score=60.59 Aligned_cols=117 Identities=10% Similarity=-0.028 Sum_probs=88.4
Q ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCH
Q 013497 75 PSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEA 153 (442)
Q Consensus 75 ~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~ 153 (442)
.+.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.+++.. +. .| +..+|..+-.+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-EL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCH
Confidence 3445679999999999987753 2358899999999999999999999999988 44 44 457888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 013497 154 EKAYEVEEHMGLMGLSLEQQEIAALLKV--SAETGRVEKVYQYLQ 196 (442)
Q Consensus 154 ~~A~~l~~~M~~~g~~p~~~ty~~li~~--~~~~g~~~~a~~ll~ 196 (442)
++|.+.|++..+..-. +...+..+-.+ +.+.|++++|.++++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998765311 22344444444 788899999998887
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.051 Score=52.64 Aligned_cols=168 Identities=10% Similarity=-0.016 Sum_probs=117.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH---HHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHh----C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ-NLRLSLH---HFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLS----N 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~-g~~p~~~---ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~----~ 95 (442)
.+..+...|.+.|++++|.+++..+... +-.++.. ....++. .+...+ ..+.|.+++..... .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHh
Confidence 6888999999999999999999986532 1112222 2233333 223334 78888888887643 3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhC-CC--CC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 013497 96 NVIPN-EASVTSVARLAASKNDGDYAFVLIKRMNNEF-NV--VP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLM---- 166 (442)
Q Consensus 96 g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~-g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---- 166 (442)
+..+. ..++..+...|...|++++|..++.+..... +. .| ...+|..++..|...|++++|..+++.....
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 44443 4677889999999999999999999876221 11 11 1357889999999999999999999876532
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 167 GLSLE--QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 167 g~~p~--~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
+..|. ...+..+...+...|++++|...|.+..+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 21111 24566666677789999999988877654
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.44 E-value=0.037 Score=54.92 Aligned_cols=135 Identities=8% Similarity=-0.163 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+=..|.+.|++++|+..|++..+.. |+... .. -+...+ ...+ ...+|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~~---------~~~~~~-~~~~-------~~~~~ 320 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG----------LS---------EKESKA-SESF-------LLAAF 320 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS----------CC---------HHHHHH-HHHH-------HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc----------CC---------hHHHHH-HHHH-------HHHHH
Confidence 77788888999999999999999977532 11100 00 000000 0011 12445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~ 183 (442)
..+-.+|.+.|++++|+..+++.. ... ..+...|..+-.+|...|++++|...|+...+. .| +...+..+-..+.
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKAL-GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 555666666666666666666655 321 123455556666666666666666666665543 22 2334555555555
Q ss_pred hcCCHHHHH
Q 013497 184 ETGRVEKVY 192 (442)
Q Consensus 184 ~~g~~~~a~ 192 (442)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.42 E-value=0.046 Score=50.20 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALL 179 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li 179 (442)
...+..+-..+.+.|++++|...|++.. .. .| +...|..+-.+|.+.|++++|...++...+.. .-+...|..+-
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAI-TR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3445555555566666666666666555 22 23 34455555556666666666666666555432 11344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 013497 180 KVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~ 199 (442)
.+|...|++++|...|.+..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55666666666666665543
No 174
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.42 E-value=0.15 Score=41.10 Aligned_cols=115 Identities=10% Similarity=0.000 Sum_probs=94.0
Q ss_pred CchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCC
Q 013497 77 SKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLE 152 (442)
Q Consensus 77 ~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~ 152 (442)
.-.+++++|.+.|++..+.|. |+.. |-..|...+.+++|++.|+.-. +.| +...+..|=..|.. .++
T Consensus 6 g~~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 6 TVKKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred CCccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 345689999999999999883 3433 5566777778899999999988 655 66778888888888 899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccC
Q 013497 153 AEKAYEVEEHMGLMGLSLEQQEIAALLKVSAE----TGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 153 ~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~a~~ll~~m~~~~~ 203 (442)
.++|.+.|+.-.+.| +...+..|-..|.. .++.++|.++|++-.+.|.
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999999998886 56777888888888 8899999999998887753
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.42 E-value=0.014 Score=58.34 Aligned_cols=119 Identities=13% Similarity=0.023 Sum_probs=90.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVAR 109 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 109 (442)
-..+.+.|++++|++.|++..+.. +-+..+|..+-.++...+ ++++|.+.|++..+... -+..+|..+-.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 82 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELDK-KYIKGYYRRAA 82 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHSCT-TCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 345677899999999999987652 234677777777888888 99999999999988643 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHhhCCCCCC-cccHHHHHHH--HHHcCCHHHHHHHHH
Q 013497 110 LAASKNDGDYAFVLIKRMNNEFNVVPR-LRTYDPALFC--FCENLEAEKAYEVEE 161 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~--~~~~g~~~~A~~l~~ 161 (442)
+|.+.|++++|.+.|++.. +. .|+ ...+..+-.+ +.+.|++++|.++++
T Consensus 83 ~~~~~g~~~eA~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVV-KV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHH-HH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999987 43 343 3455555555 788899999999988
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.39 E-value=0.032 Score=55.87 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHhC---CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHh----hCC-CCCCc-ccHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSN---NVI---P-NEASVTSVARLAASKNDGDYAFVLIKRMNN----EFN-VVPRL-RTYDPALFCF 147 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~---g~~---p-~~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~~g-~~p~~-~ty~~li~~~ 147 (442)
++++|..++++..+. -.. | -..+++.|...|...|++++|..++++... ..| -.|++ .+|+.|-..|
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN 403 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 899999999887652 122 2 257899999999999999999999988651 122 12332 6799999999
Q ss_pred HHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 148 CENLEAEKAYEVEEHMGLM---GLSLE----QQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 148 ~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
...|++++|..++++..+- -+-|| ..+.+.|-.++...+.+.+|..++.++++.
T Consensus 404 ~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876431 12232 234555666777888999999999999764
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.27 E-value=0.048 Score=42.99 Aligned_cols=94 Identities=11% Similarity=0.038 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+-.+-..+.+.|++++|+..|++..+.. +-+...|..+=.++...+ ++++|...|++..+... -+...+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~al~l~P-~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENE--------KDGLAIIALNHARMLDP-KDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCC-CCHHHH
Confidence 34445556677788888888888776542 124445544444666666 78888888877766432 255677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
..+-.+|...|++++|...+++..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777788888888888887766
No 178
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.18 E-value=0.055 Score=43.85 Aligned_cols=113 Identities=16% Similarity=0.069 Sum_probs=90.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS-- 113 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~-- 113 (442)
..+.++|++.|.+..+.|. |+.. |=..|..+. .+++|.+.|+...+.| +...+..|-..|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~--------~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQI--------NKQKLFQYLSKACELN---SGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTS--------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCC--------CHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCC
Confidence 4578999999999998883 4443 222555555 6888999999998876 56777888888887
Q ss_pred --cCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 013497 114 --KNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 114 --~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~ 168 (442)
.++.++|++.|+.-. +.| +...+..|-..|.. .++.++|.+.|+.-.+.|.
T Consensus 72 g~~~d~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKAC-GLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCccHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 889999999999988 665 56678888888888 8999999999999988774
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.17 E-value=0.16 Score=39.56 Aligned_cols=90 Identities=9% Similarity=-0.004 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLR-LS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN--EASVTS 106 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~--~~ty~~ 106 (442)
..+.+.|++++|...|++..+..-. |. ...+..+-.++...+ ++++|...|+...+...... ..++..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--------NFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 3444556666666666655442210 10 012222222344444 55555555555544321110 334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhH
Q 013497 107 VARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+-.+|.+.|++++|...|++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.91 E-value=0.09 Score=52.05 Aligned_cols=124 Identities=8% Similarity=-0.037 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc
Q 013497 60 HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR 138 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 138 (442)
.|..+=..+...+ ++++|...|++..+.... ++ + .-+... +.. . -...
T Consensus 270 ~~~~~G~~~~~~g--------~~~~A~~~y~~Al~~~p~~~~---~-----------~~~~~~----~~~-~----~~~~ 318 (457)
T 1kt0_A 270 IVKEKGTVYFKGG--------KYMQAVIQYGKIVSWLEMEYG---L-----------SEKESK----ASE-S----FLLA 318 (457)
T ss_dssp HHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHTTCCS---C-----------CHHHHH----HHH-H----HHHH
T ss_pred HHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhccccc---C-----------ChHHHH----HHH-H----HHHH
Confidence 4444444555666 899999999987653211 11 0 011111 111 1 1246
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh-HHHHHHHHHh
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 217 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~li~~~ 217 (442)
.|..+-.+|.+.|++++|...++...+..- .+...|..+-.+|...|++++|...|++..+. .|+. ..+..+...+
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 788899999999999999999999887642 36788899999999999999999999998764 4433 3444444444
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.88 E-value=0.12 Score=42.63 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhC-------C----------CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEF-------N----------VVPRLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~-------g----------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
..+...-..+.+.|++++|...|.+.. .. . -.-+...|..+-.+|.+.|++++|...++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566677888999999999998876 32 0 01123578888899999999999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 165 LMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 165 ~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
... +.+...|..+-.+|...|++++|...|.+.... .|+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 753 235778888999999999999999999987765 4543
No 182
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.70 E-value=0.48 Score=44.13 Aligned_cols=165 Identities=12% Similarity=0.020 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013497 37 KDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALR--HGFRVFDQMLSNNVIPNEASVTSVARLAASK 114 (442)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~--~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 114 (442)
+++++++++++++.+.. +-|-.+|+---.+....+ ..+ ++++.++.|.+..+. |-..|+---..+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~--------~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFD--------LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc--------ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 78999999999998654 236677776655555555 455 899999999887654 888888777777777
Q ss_pred CC------HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhc
Q 013497 115 ND------GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEK-AYEVEEHMGLMG--LSLEQQEIAALLKVSAET 185 (442)
Q Consensus 115 g~------~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~M~~~g--~~p~~~ty~~li~~~~~~ 185 (442)
+. ++++++.++++. ... .-|...|+-+-..+.+.|.... +.++.+...+.+ -..+...+..+.+.|.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI-~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKI-VKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHH-HHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHH-HhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 76 899999999887 432 3366778888888888887444 455666655432 244778899999999999
Q ss_pred CCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 186 GRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 186 g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
|+.++|.++++.+.+.-.+....-|+-.
T Consensus 272 ~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 272 KKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999864334444455443
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.61 E-value=0.094 Score=52.46 Aligned_cols=127 Identities=8% Similarity=-0.098 Sum_probs=93.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh---CCCCC----CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-----CCCC-
Q 013497 32 SCTKSKDLTTAISLYESAHS---QNLRL----SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-----NNVI- 98 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~---~g~~p----~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~-----~g~~- 98 (442)
.+-..|++++|+.++.+..+ .-+-| ...+++.|-.+|...| ++++|..++++..+ .|..
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g--------~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ--------AYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35678999999999998653 22223 2367788878888888 99999999988654 3322
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh--hCCCCCCc----ccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 99 PN-EASVTSVARLAASKNDGDYAFVLIKRMNN--EFNVVPRL----RTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 99 p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~--~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
|+ ..+++.|-..|...|++++|+.++++... ..-+-|+. .+.+.+-.++...+..++|+.+|..+.+.
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 47899999999999999999999987541 11122332 34566667777888899999999998753
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.59 E-value=0.1 Score=50.19 Aligned_cols=136 Identities=14% Similarity=0.003 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.|..+-..+.+.|++++|+..|++..+.- | . +.... ..+++.++- +-+..+|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~------~----~~~~~--------~~~~~~~~~--------~~~~~~~ 276 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--E------G----SRAAA--------EDADGAKLQ--------PVALSCV 276 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H------H----HHHHS--------CHHHHGGGH--------HHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--h------c----Ccccc--------ChHHHHHHH--------HHHHHHH
Confidence 57777888999999999999999876410 0 0 00000 111111100 0124556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
..+-.+|.+.|++++|+..+++.. + +.| +...|..+-.+|...|++++|.+.|++..+..- -+...+..+-..+.
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al-~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEAL-E--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-T--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH-H--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 666666777777777777777666 3 233 345566666667777777777777776655421 14455555555555
Q ss_pred hcCCHHHHH
Q 013497 184 ETGRVEKVY 192 (442)
Q Consensus 184 ~~g~~~~a~ 192 (442)
..++.+++.
T Consensus 353 ~~~~~~~a~ 361 (370)
T 1ihg_A 353 KIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.42 E-value=0.14 Score=49.27 Aligned_cols=79 Identities=6% Similarity=-0.109 Sum_probs=62.2
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC-hHHHHHHH
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN-EETGKIIE 214 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~li 214 (442)
+..+|..+-.+|.+.|++++|.+.++...+.. .-+...|..+-.+|...|++++|...|++..+. .|+ ...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 45778899999999999999999999998753 225778888999999999999999999988765 354 34444444
Q ss_pred HHh
Q 013497 215 DWF 217 (442)
Q Consensus 215 ~~~ 217 (442)
..+
T Consensus 349 ~~~ 351 (370)
T 1ihg_A 349 KVK 351 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.26 E-value=0.16 Score=38.95 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
|.+.|++..+.. +-+...+..+-..|...|++++|...|++.. .. .| +...|..+-..|...|+.++|...|+..
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566555433 2355666677777777777777777777766 32 23 3445666666666777777777666665
Q ss_pred HH
Q 013497 164 GL 165 (442)
Q Consensus 164 ~~ 165 (442)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.23 E-value=0.62 Score=46.51 Aligned_cols=154 Identities=8% Similarity=0.001 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhC---------
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSN--------- 95 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~--------- 95 (442)
.|-..+.-+.+.|++++|..+|++.... |.....-. .+.... ..+ ++++.+.+.
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~--------e~~---~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVM--------DEE---AVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHT--------TCT---HHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhc--------chh---HHHHHHHHHHHhhccchh
Confidence 5666666777899999999999998876 44322111 122110 000 111211110
Q ss_pred CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 013497 96 NVI---PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 96 g~~---p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~ 172 (442)
+.. .....|...++.+-+.+.++.|..+|+... ..+..+.+....+.+... ..++.+.|..+|+...+.- .-+.
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~ 354 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDST 354 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCH
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCH
Confidence 011 123556777777777778888888888764 322211111111222222 2336888888888877642 1134
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 173 QEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 173 ~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
..|...++...+.|+.+.|..+|++.
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566777777788888888888876
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.20 E-value=0.18 Score=36.31 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
...+..+-..+...|++++|...|++.. ... ..+...+..+-..|.+.|++++|.+.+++..+..- .+...+..+-.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 3456666677777788888888777766 321 22345666667777777777777777777665421 13444444444
Q ss_pred HH
Q 013497 181 VS 182 (442)
Q Consensus 181 ~~ 182 (442)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.073 Score=40.25 Aligned_cols=65 Identities=6% Similarity=-0.141 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
+...|..+-..+...|++++|.+.|++.. ... ..+...|..+-.+|.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLI-TAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567777778888888888888888876 331 224566777778888888888888888887754
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.05 E-value=0.44 Score=39.02 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS 51 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~ 51 (442)
.+...=..+.+.|++++|+..|.+..+
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677777889999999999999998764
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.05 E-value=0.085 Score=49.90 Aligned_cols=145 Identities=10% Similarity=-0.089 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.+..+-..+.+.|++++|+..|.+..+. .|+... +...+ ..+++...+. ..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~--------~~~~~~~~l~----------~~~~ 233 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYG--------KYQDMALAVK----------NPCH 233 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCH--------HHHHHHHHHH----------THHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcc--------cHHHHHHHHH----------HHHH
Confidence 6777778888999999999999997754 233321 11122 4444443321 1367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE-QQEIAALLKV- 181 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~li~~- 181 (442)
..+-.+|.+.|++++|+..++... .. .| +...|..+-.+|...|++++|...|+...+. .|+ ...+..|...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al-~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVL-TE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 788888889999999999998877 43 34 5577888888899999999999998887643 343 3334444433
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 013497 182 SAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~ 201 (442)
....+..+++..+|..|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 23356677788888877543
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.96 E-value=0.14 Score=39.27 Aligned_cols=79 Identities=9% Similarity=-0.180 Sum_probs=64.3
Q ss_pred HHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 119 YAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 119 ~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
+|+..|++.. .. .| +...+..+-..|...|++++|...|+......- .+...|..+-.+|...|+.++|...|++
T Consensus 3 ~a~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAML-AQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677787776 32 34 567788888999999999999999999887542 3567888899999999999999999998
Q ss_pred HHhc
Q 013497 198 LRST 201 (442)
Q Consensus 198 m~~~ 201 (442)
....
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.75 E-value=0.13 Score=38.72 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
+..++..+-..|.+.|++++|...|++.. +. .| +...|..+-.+|.+.|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELV-ET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56677777888888888888888888877 43 33 345677778888888888888888777653
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.63 E-value=0.29 Score=40.81 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC--------c-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR--------L-----RTYDPALFCFCENLEAEKAYEVEEHMGLM---- 166 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~-----~ty~~li~~~~~~g~~~~A~~l~~~M~~~---- 166 (442)
+...-..+.+.|++++|+..|+... + +.|+ . ..|+.+-.++.+.|++++|...++...+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL-~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAM-E--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-H--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-h--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4445556788999999999999877 3 3454 1 27888899999999999999999988764
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 167 -GLSLEQ-QEI----AALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 167 -g~~p~~-~ty----~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.+.|+. ..| ...-.++...|++++|...|++-.+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 235654 466 7777888899999999999988754
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.13 Score=38.82 Aligned_cols=69 Identities=9% Similarity=0.030 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
+...|..+-..+...+ ++++|.+.|++..+.. +.+..+|..+-.+|.+.|++++|...+++.. . +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~--------~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQG--------LYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-R--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--SCSS
T ss_pred hHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC
Confidence 3445555555666666 8999999999987754 3367889999999999999999999999988 4 4666
Q ss_pred c
Q 013497 137 L 137 (442)
Q Consensus 137 ~ 137 (442)
.
T Consensus 71 ~ 71 (111)
T 2l6j_A 71 A 71 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.21 E-value=2 Score=42.10 Aligned_cols=155 Identities=11% Similarity=0.027 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCCCCCchhhHHHHHHHHHHHHhCCC
Q 013497 25 NFLINLQSCTKS----KDLTTAISLYESAHSQNLRLSLHHFNALLYL-C--SDSATDPSSKDSALRHGFRVFDQMLSNNV 97 (442)
Q Consensus 25 ~~~~li~~~~k~----g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~-~--~~~~~~~~~~~~~~~~a~~l~~~M~~~g~ 97 (442)
.+..|-..|... ++.++|+..|++.. .|. +..+..|=.+ + ...+ ++++|.+.|++..+.|
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~Lg~~~~~~~~~~--------d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVSLAQLLYDFPELG--------DVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHHHHHHHHHSGGGC--------CHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHHCC-
Confidence 334455555444 69999999999987 443 3444444333 3 2334 8999999999998887
Q ss_pred CCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 013497 98 IPNEASVTSVARLAASKN-----DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAEKAYEVEEHMGLMGL 168 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g-----~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~g~ 168 (442)
+...+..|-..|. .| +.++|.+.|+... .-+...+..|-..|.. ..+.++|.+.|+.-.+.|.
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 5667777777776 55 9999999997644 3355566666666655 3389999999999988875
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhccC
Q 013497 169 SLEQQEIAALLKVSAE----TGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 169 ~p~~~ty~~li~~~~~----~g~~~~a~~ll~~m~~~~~ 203 (442)
. .....|-..|.. ..+.++|..+|..-.+.|.
T Consensus 354 ~---~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 354 N---SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp T---THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred H---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3 344455555543 4588999999988877763
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=93.92 E-value=0.17 Score=47.88 Aligned_cols=95 Identities=8% Similarity=-0.073 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc------------------cHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR------------------TYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~------------------ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
..+..+-..+.+.|++++|...|++.. . +.|+.. .|..+-.+|.+.|++++|...++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al-~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAI-A--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHH-H--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-H--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666677888999999999998876 3 245433 7888889999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 164 GLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
.+.. ..+...|..+-.+|...|++++|...|++...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7753 23678889999999999999999999987754
No 198
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.83 E-value=0.63 Score=48.97 Aligned_cols=96 Identities=8% Similarity=0.054 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+. . |..+...|...|+.+...++-
T Consensus 667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C---------hhhhHHHHHHcCCHHHHHHHH
Confidence 566666665433 466788888888888888888888887776 2 555666666677776666555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
+.....|- ++.-..+|.+.|++++|.+++.++
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 55544432 244444556667777777776655
No 199
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=93.81 E-value=3.2 Score=38.40 Aligned_cols=186 Identities=8% Similarity=0.102 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 25 NFLINLQSCTKSK--DLTTAISLYESAHSQNLRLSLHHFNALLYLC----SDSATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 25 ~~~~li~~~~k~g--~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~----~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
.||.-=..+...+ ++++++++++.+...+-+ +..+|+.--.+. ...+. .+.+++++++++.+.+...
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~-----~~~~~~EL~~~~~~l~~~p- 141 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN-----DFDPYREFDILEAMLSSDP- 141 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT-----CCCTHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHhCC-
Confidence 4555555566667 899999999998765422 234454443322 33310 0168899999999988653
Q ss_pred CCHHHHHHHHHHHHhcCCHH--HHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCC
Q 013497 99 PNEASVTSVARLAASKNDGD--YAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE------AEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~~~--~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~------~~~A~~l~~~M~~~g~~p 170 (442)
-|-.+|+----.+.+.|.++ ++++.++.+. +.. .-|-..|+.--..+.+.|. ++++++.++.+......
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~- 218 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ- 218 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-
Confidence 37888888888888889888 9999999998 542 2245566655555556665 88999999998876544
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcc--CCCChHHHHHHHHHhccccC
Q 013497 171 EQQEIAALLKVSAETGRV-EKVYQYLQKLRSTV--RCVNEETGKIIEDWFSGQKV 222 (442)
Q Consensus 171 ~~~ty~~li~~~~~~g~~-~~a~~ll~~m~~~~--~~p~~~t~~~li~~~~~~~~ 222 (442)
|...|+-+-..+.+.|+. +.+..+..++...+ -..++.....+...+ .+.
T Consensus 219 n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~--~~~ 271 (306)
T 3dra_A 219 NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY--TQQ 271 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH--HHT
T ss_pred CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH--Hcc
Confidence 788898888888888874 33555666554432 133556667777777 544
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.79 E-value=0.93 Score=32.31 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~ 94 (442)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-.++...+ ++++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG--------DYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHh
Confidence 44555555555666666666666554332 112333444333444444 55555555555444
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.45 E-value=0.32 Score=36.42 Aligned_cols=81 Identities=10% Similarity=-0.109 Sum_probs=61.1
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV-RCVNEETGKIIE 214 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~-~~p~~~t~~~li 214 (442)
+...+..+-..|.+.|++++|.+.|+...+..-. +...|..+-.+|.+.|++++|.+.|++..... -.++.....-+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 4567888889999999999999999999876422 45688899999999999999999998876531 223444444444
Q ss_pred HHh
Q 013497 215 DWF 217 (442)
Q Consensus 215 ~~~ 217 (442)
..+
T Consensus 85 ~~l 87 (100)
T 3ma5_A 85 DAK 87 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.29 E-value=0.8 Score=45.69 Aligned_cols=123 Identities=8% Similarity=0.006 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 59 HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVT--SVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
..|-..+....+.+ .++.|..+|+.. .. ..++...|. +.+...+ .++.+.|..+|+...+.. |+
T Consensus 287 ~lw~~y~~~~~r~~--------~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~---~~ 352 (493)
T 2uy1_A 287 LLRINHLNYVLKKR--------GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH---PD 352 (493)
T ss_dssp HHHHHHHHHHHHHH--------CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC---TT
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC---CC
Confidence 44555555555554 688899999888 22 112333443 3333323 236899999999887233 33
Q ss_pred -cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 137 -LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 137 -~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...+...+....+.|+.+.|..+|+.... ....|...++.=...|+.+.+..++++...
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22355567777788999999999999742 567888888877788999999998988875
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.97 E-value=0.61 Score=45.68 Aligned_cols=93 Identities=9% Similarity=-0.069 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhh--CCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNE--FNVVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLM-----G-LSL-EQQ 173 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~--~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~p-~~~ 173 (442)
.+..+.+.|++++|+.++++.... .-+-|+ ..+++.|...|...|++++|..++++...- | --| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355667789999999999987621 112232 368999999999999999999999987532 2 122 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
+|+.|-..|...|++++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78899999999999999999998764
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.88 E-value=0.53 Score=46.14 Aligned_cols=87 Identities=10% Similarity=-0.097 Sum_probs=66.9
Q ss_pred hcCCHHHHHHHHHHhHh--hCCCCCC----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 013497 113 SKNDGDYAFVLIKRMNN--EFNVVPR----LRTYDPALFCFCENLEAEKAYEVEEHMGLM-----G-LSLE-QQEIAALL 179 (442)
Q Consensus 113 ~~g~~~~A~~~~~~m~~--~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-----g-~~p~-~~ty~~li 179 (442)
..|++++|+.++++... +.-+-|+ ..+++.|...|...|++++|..++++..+- | --|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35788999999987652 1223333 278999999999999999999999987532 2 1222 45789999
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 013497 180 KVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~ 199 (442)
..|...|++++|..++++-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998754
No 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.86 E-value=1.2 Score=37.04 Aligned_cols=96 Identities=13% Similarity=-0.012 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CHH-----HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLR-L-----SLH-----HFNALLYLCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~-p-----~~~-----ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
.+...=..+.+.|++++|+..|++..+..-. | +.. .|+.+=.++...+ ++++|+..|+...
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--------r~~eAl~~~~kAL 84 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------SFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH
Confidence 4555566678899999999999997753211 1 222 6666655677777 8999999999877
Q ss_pred hC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 94 SN-----NVIPN-EASV----TSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 94 ~~-----g~~p~-~~ty----~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
+. -+.|+ ...| ...-.++...|++++|+..|++..
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 63 11444 3455 666677777888888888877764
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.84 E-value=0.51 Score=46.28 Aligned_cols=84 Identities=2% Similarity=-0.128 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHh---CCCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHhHh----hCC-CCCCc-ccHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLS---NNVIP---N-EASVTSVARLAASKNDGDYAFVLIKRMNN----EFN-VVPRL-RTYDPALFCF 147 (442)
Q Consensus 81 ~~~~a~~l~~~M~~---~g~~p---~-~~ty~~li~~~~~~g~~~~A~~~~~~m~~----~~g-~~p~~-~ty~~li~~~ 147 (442)
++++|..++++..+ .-..| + ..+++.|..+|...|++++|+.++++... ..| -.|++ .+|+.|-..|
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY 392 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 68899999987655 22223 2 47899999999999999999999998752 122 12333 6799999999
Q ss_pred HHcCCHHHHHHHHHHHH
Q 013497 148 CENLEAEKAYEVEEHMG 164 (442)
Q Consensus 148 ~~~g~~~~A~~l~~~M~ 164 (442)
...|++++|..++++..
T Consensus 393 ~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 393 MGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHH
Confidence 99999999999998764
No 207
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.26 E-value=4.1 Score=38.47 Aligned_cols=171 Identities=13% Similarity=0.042 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 013497 38 DLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND- 116 (442)
Q Consensus 38 ~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~- 116 (442)
+.++++++++++.+..- -|-.+|+---.+....+.........+.++++.++++.+..+. |..+|+-.-..+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 55666666666654331 2444444433222222200000011234899999999887644 88899988888888876
Q ss_pred ------HHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC--
Q 013497 117 ------GDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEA--------------------EKAYEVEEHMGLMG-- 167 (442)
Q Consensus 117 ------~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~--------------------~~A~~l~~~M~~~g-- 167 (442)
++++++.+++.. .. .| |...|+-+-..+.+.|.. .+..+...++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI-~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSI-HL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp CCCHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred ccchHHHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 688999998877 43 34 556777766666666654 22333333333222
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHH
Q 013497 168 ---LSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKII 213 (442)
Q Consensus 168 ---~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 213 (442)
-.++...+..|.+.|...|+.++|.++++.+.+.-.+....-|+-.
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 1467888999999999999999999999999765444444444433
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.23 E-value=0.8 Score=44.83 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-----
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQ--N-LRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS----- 94 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~--g-~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~----- 94 (442)
...|..+.+.|++++|+.++++..+. . +.|+ ..+++.|..+|...| ++++|+.++++...
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g--------~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG--------LLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhHHHH
Confidence 34466777889999999999998743 2 2332 357777777888888 89999999997754
Q ss_pred CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 95 NNVI-PN-EASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 95 ~g~~-p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.|.. |+ ..+|+.|-..|...|++++|+.++++..
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2322 33 4678888899999999999998888765
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.14 E-value=1 Score=37.34 Aligned_cols=98 Identities=6% Similarity=-0.092 Sum_probs=67.1
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHhHhhCCCCCCc-ccHHHHHHH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDG----------DYAFVLIKRMNNEFNVVPRL-RTYDPALFC 146 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~----------~~A~~~~~~m~~~~g~~p~~-~ty~~li~~ 146 (442)
+.+.+++|.+.++...+... -+...|+.+=.++...+++ ++|+..|++.. + +.|+. ..|..+=.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-L--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-H--HCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-H--hCcCcHHHHHHHHHH
Confidence 45688899999998877653 3677777777777777664 58888888876 3 35543 567777777
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 147 FCENL-----------EAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 147 ~~~~g-----------~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
|...| ++++|.+.|+...+. .|+...|..-+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 77664 677777777776653 4655555444443
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=91.95 E-value=3.7 Score=41.65 Aligned_cols=175 Identities=9% Similarity=-0.016 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCC--CCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013497 36 SKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDP--SSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAAS 113 (442)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~--~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 113 (442)
...-++|++.++++.+.+- -+...|+.-=.+....+.+. ......++++++.++.+.+...+ +-.+|+----.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3445688999999886542 12344443322222222000 00001289999999999886544 77888888888888
Q ss_pred cC--CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 013497 114 KN--DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENL-EAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAET----- 185 (442)
Q Consensus 114 ~g--~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~----- 185 (442)
.+ +++++++.++.+. +.. .-|-..|+.---.+.+.| ..+++.+.++.+.+.... |...|+..-..+.+.
T Consensus 120 l~~~~~~~el~~~~k~l-~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHH-hhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccc
Confidence 89 7799999999998 542 225566777777777888 899999999999876544 777888777766653
Q ss_pred ---------CCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHh
Q 013497 186 ---------GRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWF 217 (442)
Q Consensus 186 ---------g~~~~a~~ll~~m~~~~~~p-~~~t~~~li~~~ 217 (442)
+.++++.+.+.+.... .| +.+.|.-.--.+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll 236 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 236 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 4578888888877654 34 455666554444
No 211
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=91.75 E-value=8.8 Score=36.17 Aligned_cols=179 Identities=9% Similarity=-0.006 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
.++.+-....+....++|+++++++...+- -+...|+.-=.+....+. .+++++++++.+.....+ +-.+|
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~L~~nPK-ny~aW 126 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNK-------SLEDELRLMNEFAVQNLK-SYQVW 126 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHTTCC-CHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhCCC-cHHHH
Confidence 344444445556667799999999886542 133445544333333330 489999999999887654 77788
Q ss_pred HHHHHHHHhc-C-CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHH
Q 013497 105 TSVARLAASK-N-DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE--------KAYEVEEHMGLMGLSLEQQE 174 (442)
Q Consensus 105 ~~li~~~~~~-g-~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~l~~~M~~~g~~p~~~t 174 (442)
+---..+.+. + ++++++++++.+. ... .-|-..|+.---.+.+.|..+ ++++.++.+.+.... |...
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L-~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SA 203 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSL-LPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSA 203 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHT-SSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHH
Confidence 8777777766 6 8999999999988 431 224445554444444445555 899999999887644 7788
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhccCCC-ChHHHHHHHHHh
Q 013497 175 IAALLKVSAETGR-------VEKVYQYLQKLRSTVRCV-NEETGKIIEDWF 217 (442)
Q Consensus 175 y~~li~~~~~~g~-------~~~a~~ll~~m~~~~~~p-~~~t~~~li~~~ 217 (442)
|+-.-..+.+.+. ++++.+.+.+.... .| |.+.|+-+--.+
T Consensus 204 W~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 204 WGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFL 252 (349)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 8887777777765 67888888877754 34 445555443333
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.86 E-value=3.8 Score=38.93 Aligned_cols=152 Identities=11% Similarity=-0.013 Sum_probs=97.3
Q ss_pred CCCCHHHHHHHHHHHH--hcCCCCCCchhhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh----cC-CHHHHH---H
Q 013497 54 LRLSLHHFNALLYLCS--DSATDPSSKDSALRHGFRVFDQMLSNNVIPN-EASVTSVARLAAS----KN-DGDYAF---V 122 (442)
Q Consensus 54 ~~p~~~ty~~ll~~~~--~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~----~g-~~~~A~---~ 122 (442)
.+.+...|...+.+.. ..+ ....+.+|.++|++..+. .|+ ...|..+.-+|.. .+ ...... .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~-----~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHG-----DDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 3456677888876322 211 122678999999998775 354 3444443333321 11 111111 1
Q ss_pred HHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 123 LIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 123 ~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
-++.......-..+..+|..+-..+...|++++|...++.....+ |+...|..+-..+.-.|+.++|.+.+.+-...
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL- 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL- 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 111111011224567888888777777899999999999999886 88888877777788899999999999876654
Q ss_pred CCCChHHHHHHHHH
Q 013497 203 RCVNEETGKIIEDW 216 (442)
Q Consensus 203 ~~p~~~t~~~li~~ 216 (442)
.|...||...-..
T Consensus 340 -~P~~~t~~~~~~l 352 (372)
T 3ly7_A 340 -RPGANTLYWIENG 352 (372)
T ss_dssp -SCSHHHHHHHHHS
T ss_pred -CCCcChHHHHhCc
Confidence 6787777555443
No 213
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.58 E-value=5.7 Score=33.42 Aligned_cols=97 Identities=7% Similarity=0.100 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHH
Q 013497 80 SALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 80 ~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 159 (442)
|+++.|.++-+++ -+...|..|-+...+.|+++-|.+.|.... . |..|.--|.-.|+.++-.++
T Consensus 19 g~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 19 GNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-S---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp TCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-C---------HHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-C---------HHHHHHHHHHhCCHHHHHHH
Confidence 3899999998877 478999999999999999999999998877 2 67777778889998887766
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 160 EEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 160 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
-+.-...| -++.-...+.-.|+++++.++|.+.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55554444 2466666677789999998888543
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.38 E-value=2.2 Score=44.72 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC
Q 013497 56 LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP 135 (442)
Q Consensus 56 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p 135 (442)
.+...|..|-..|...+ +++.|.+.|..+.. |..+...|...|+.+...++-+... ..|
T Consensus 679 ~~~~~W~~la~~al~~~--------~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~-~~~--- 737 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRF--------NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE-TTG--- 737 (814)
T ss_dssp CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-HTT---
T ss_pred CcHhHHHHHHHHHHHcC--------CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-HcC---
Confidence 46688999888888888 99999999998843 5677777777888887777766655 433
Q ss_pred CcccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 136 RLRTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 136 ~~~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
-|+....+|.+.|++++|.+++.++.
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 36777777888888888888877663
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.28 E-value=1.2 Score=32.52 Aligned_cols=53 Identities=11% Similarity=-0.040 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHhHhhCCCCCC-cc-cHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 110 LAASKNDGDYAFVLIKRMNNEFNVVPR-LR-TYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 110 ~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.+.+.|++++|...|++.. .. .|+ .. .|..+-.+|...|++++|.+.|+...+
T Consensus 9 ~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFL-QT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHH-HH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555544 21 222 23 444444455555555555555555444
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.23 E-value=2.5 Score=40.17 Aligned_cols=144 Identities=10% Similarity=-0.061 Sum_probs=91.0
Q ss_pred HHHHHHHHHHh--c---CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH-hcCCCCCCchhhHHHHHHHHHHHHh-CC
Q 013497 25 NFLINLQSCTK--S---KDLTTAISLYESAHSQNLRLS-LHHFNALLYLCS-DSATDPSSKDSALRHGFRVFDQMLS-NN 96 (442)
Q Consensus 25 ~~~~li~~~~k--~---g~~~~A~~lf~~m~~~g~~p~-~~ty~~ll~~~~-~~~~~~~~~~~~~~~a~~l~~~M~~-~g 96 (442)
.|...+.+... . .+..+|..+|++..+. .|+ ...|..+--++. ....... .........+-++.... ..
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~-~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPL-DEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHHHHhccc
Confidence 77777766543 2 3358999999998864 343 234443322221 1100000 01122222222222111 22
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 97 VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 97 ~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
-+.+..+|.++--.+...|++++|...++... ..+ |+...|..+=..+.-.|+.++|.+.|++.... .|...||.
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 35688899988888888899999999999998 654 88777777777888999999999999887664 57776654
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.11 E-value=2.6 Score=34.56 Aligned_cols=50 Identities=12% Similarity=0.027 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhH
Q 013497 78 KDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKN---DGDYAFVLIKRMN 128 (442)
Q Consensus 78 ~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~~~~~m~ 128 (442)
....+..+.+-|.+....|. ++..+--.+--++++.. +.+++..+|++..
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll 62 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL 62 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33456666666766666554 45666556666667766 4557777777766
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.95 E-value=4.1 Score=37.32 Aligned_cols=130 Identities=7% Similarity=-0.013 Sum_probs=91.9
Q ss_pred CHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHh
Q 013497 57 SLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN---EASVTSVARLAASK-----NDGDYAFVLIKRM 127 (442)
Q Consensus 57 ~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~~~~~m 127 (442)
....|..++. .+......+..-.+.+.+|..++++..+. .|+ -..|+.|-..|.+. |+.++|.+.|++-
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3455666655 33333234455556788888888887664 455 67899999999994 9999999999998
Q ss_pred HhhCCCCCC--cccHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013497 128 NNEFNVVPR--LRTYDPALFCFCEN-LEAEKAYEVEEHMGLMGLS--LEQQEIAALLKVSAETGRVEKVYQYLQKLR 199 (442)
Q Consensus 128 ~~~~g~~p~--~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~g~~--p~~~ty~~li~~~~~~g~~~~a~~ll~~m~ 199 (442)
. . +.|+ .-++...-..+|.. |+.++|.+.+++-...... |+....|.+- -.+|..++.+..
T Consensus 231 L-~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~~ 296 (301)
T 3u64_A 231 T-R--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHVQ 296 (301)
T ss_dssp H-H--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTHH
T ss_pred H-H--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHhH
Confidence 7 4 4673 67788888888884 9999999999999888766 7754444332 245555555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=87.50 E-value=2.5 Score=30.69 Aligned_cols=58 Identities=10% Similarity=0.008 Sum_probs=48.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 143 ALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ-EIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 143 li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
....+.+.|++++|.+.|+...+..- .+.. .|..+-.+|...|++++|...|++....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34567789999999999999887532 2456 7888888999999999999999998765
No 220
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.12 E-value=16 Score=34.12 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013497 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSA-LRHGFRVFDQMLSNNVIPNEASVTSVARLAA 112 (442)
Q Consensus 39 ~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~-~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~ 112 (442)
+++++.+++++.+... -|-.+|+---.+....+ . .+++++.++.+.+..+. |..+|+-.-..+.
T Consensus 126 ~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~--------~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 126 WARELELCARFLEADE-RNFHCWDYRRFVAAQAA--------VAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC--------cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 5566666666554331 23444444433333333 2 35555666555554432 5555554444433
No 221
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=86.65 E-value=1.7 Score=35.98 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=79.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013497 34 TKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSA--TDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (442)
Q Consensus 34 ~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~--~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 111 (442)
.+.+.+++|++.+++..+.. +-+...|+.+=.++...+ ..+....+.+++|+..|++..+.... +..+|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 45567889999999987654 235566665544443332 00000011367999999998775433 567888888888
Q ss_pred HhcC-----------CHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 112 ASKN-----------DGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 112 ~~~g-----------~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
...| ++++|.+.|++.. + +.|+...|...+... ++|-+++.+....
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl-~--l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV-D--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH-H--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH-H--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 8764 8999999999988 4 578877776665543 4455555555444
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.19 E-value=3.8 Score=32.96 Aligned_cols=147 Identities=10% Similarity=-0.005 Sum_probs=69.7
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQS--CTKSKDLTTAISLYESAHS-QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~--~~k~g~~~~A~~lf~~m~~-~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
+...|+++ ..-.|.+++..++..+... +++ .-||=+|.-..... .-+-..++++.. |--.|.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ssni----~E~NW~ICNiiD~a--------~C~y~v~vLd~I---GkiFDi 71 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTK----SEYNWFICNLLESI--------DCRYMFQVLDKI---GSYFDL 71 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH----HHHTHHHHHHHHHC--------CHHHHHHHHHHH---GGGSCG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCc----cccceeeeecchhh--------chhHHHHHHHHH---hhhcCc
Confidence 34445544 3446889999999998764 333 34444443111111 122223333322 211121
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
..+|++.....-+-.+- .+...++..|+.+...|.-|.-.+++.++.. +..|+....-.+-.+
T Consensus 72 ----------s~C~NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~A 134 (172)
T 1wy6_A 72 ----------DKCQNLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANA 134 (172)
T ss_dssp ----------GGCSCTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHH
T ss_pred ----------HhhhcHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHH
Confidence 23444444444443322 1334445555555555555555555555422 233444455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhccC
Q 013497 182 SAETGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~ 203 (442)
|.+.|+..+|.+++.+--+.|+
T Consensus 135 y~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 135 LRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcchhhHHHHHHHHHHhhh
Confidence 5555555555555555555543
No 223
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=85.92 E-value=1.7 Score=37.94 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+.|...++.|+.+.+..+++.+.+.|..++. .-++.|..++..+. .++++.+.+.|..|+....
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~ 77 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL-------------PSVVRLLVTAGASPMALDR 77 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCCCT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCC-------------HHHHHHHHHcCCCccccCC
Confidence 3456677889999888888877777755443 23344544555543 4566677777776643221
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HH
Q 013497 105 --TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE---IA 176 (442)
Q Consensus 105 --~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t---y~ 176 (442)
.+.+...+..|+.+-+..+++... ..++.++. .-.++ +...+..|..+ +++.+.+.|..++... -.
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~g~ 151 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAA-PGTLDLEARNYDGLTA-LHVAVNTECQE----TVQLLLERGADIDAVDIKSGR 151 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSC-TTSCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC-CccccccccCcCCCcH-HHHHHHcCCHH----HHHHHHHcCCCcccccccCCC
Confidence 244555577888887777776654 32333332 23344 44455667754 4445555665554321 22
Q ss_pred HHHHHHHhcCCHHHHHH
Q 013497 177 ALLKVSAETGRVEKVYQ 193 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~ 193 (442)
+.+...+..|..+-+..
T Consensus 152 t~L~~A~~~~~~~~v~~ 168 (241)
T 1k1a_A 152 SPLIHAVENNSLSMVQL 168 (241)
T ss_dssp CHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHcCCHHHHHH
Confidence 34444456677654433
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.00 E-value=9.7 Score=31.15 Aligned_cols=96 Identities=15% Similarity=0.043 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 013497 117 GDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENL---EAEKAYEVEEHMGLMGLSL--EQQEIAALLKVSAETGRVEKV 191 (442)
Q Consensus 117 ~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~M~~~g~~p--~~~ty~~li~~~~~~g~~~~a 191 (442)
...+.+-|.+.. ..+- ++..+--.+--++++.. +++++..++++..+.. .| ....+-.|--+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~-~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHH-HTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHH-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 445566666655 4443 56666666666788887 7779999999998865 34 234444556677899999999
Q ss_pred HHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 192 YQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 192 ~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.+.++.+.+. .|+..-...+...+
T Consensus 91 ~~y~~~lL~i--eP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 9999999875 68766666666555
No 225
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=83.51 E-value=29 Score=32.33 Aligned_cols=156 Identities=10% Similarity=-0.006 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-H
Q 013497 39 LTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND-G 117 (442)
Q Consensus 39 ~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-~ 117 (442)
+++++.+++.+....- -+..+|+.--.++...+. ..+++++++++.|.+... -|-.+|+----.+...|. +
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~------~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPE------PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSS------CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCc------ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCH
Confidence 6788888888776432 355666655544444430 037889999999887654 377788777777777887 5
Q ss_pred HHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 013497 118 DYAFVLIKRMNNEFNVVPRLRTYDPALFCFCEN--------------LEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSA 183 (442)
Q Consensus 118 ~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~ 183 (442)
+++++.++.+. ... .-|...|+..-..+.+. +.++++++.+........ -|...|+-+--.+.
T Consensus 162 ~eel~~~~~~I-~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 162 AEELAFTDSLI-TRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLG 238 (331)
T ss_dssp HHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 88999998888 442 23555666655555544 447788888887776532 26666665544444
Q ss_pred hc-----------CCHHHHHHHHHHHHhccCCCCh
Q 013497 184 ET-----------GRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 184 ~~-----------g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
+. +.++++.+.+.++.+. .|+.
T Consensus 239 ~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 239 AGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp SSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred hccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 43 3467777777777654 4543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=81.79 E-value=22 Score=29.80 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=92.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASVTSVARLA 111 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 111 (442)
...+.|+++.|.++-+++ -+...|..|=..+...+ +++-|.+.|..... |..+.-.|
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~g--------n~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQG--------NASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcC--------ChHHHHHHHHHhCC---------HHHHHHHH
Confidence 345689999999998876 35689999998777777 89999999998742 56677777
Q ss_pred HhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013497 112 ASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKV 191 (442)
Q Consensus 112 ~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a 191 (442)
.-.|+.+.-.++-+.-. ..| -+|.....+.-.|+++++.++|.+. |..|.... .....|..+.|
T Consensus 71 ~~tg~~e~L~kla~iA~-~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a 134 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQ-TRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAA 134 (177)
T ss_dssp HHHTCHHHHHHHHHHHH-HTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHH-HCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHH
Confidence 78888877666654443 333 4788888899999999999998554 33332111 11236777788
Q ss_pred HHHHHHH
Q 013497 192 YQYLQKL 198 (442)
Q Consensus 192 ~~ll~~m 198 (442)
.+++.++
T Consensus 135 ~~~~~~~ 141 (177)
T 3mkq_B 135 SAFLEQA 141 (177)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8887765
No 227
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.09 E-value=6.3 Score=37.76 Aligned_cols=118 Identities=8% Similarity=-0.068 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHH---hcCCHHHHHHHHHHhHhh-CC-CCCCc------------------ccHHHHHHHHHHcCCHHH
Q 013497 99 PNEASVTSVARLAA---SKNDGDYAFVLIKRMNNE-FN-VVPRL------------------RTYDPALFCFCENLEAEK 155 (442)
Q Consensus 99 p~~~ty~~li~~~~---~~g~~~~A~~~~~~m~~~-~g-~~p~~------------------~ty~~li~~~~~~g~~~~ 155 (442)
.|...|..++.... ..|+.+.|...+.+...- .| +-|+. .+...++..+...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 35556666665432 357788887777776511 11 22222 122345677778999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----ccCCCChHHHHHHHHHh
Q 013497 156 AYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS-----TVRCVNEETGKIIEDWF 217 (442)
Q Consensus 156 A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~~li~~~ 217 (442)
|...+..+.... +.++..|..||.++.+.|+..+|.+.|++++. .|+.|++.+-...-...
T Consensus 190 a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il 255 (388)
T 2ff4_A 190 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL 255 (388)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 998888886542 44888999999999999999999999998755 59999998765554444
No 228
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.75 E-value=5.9 Score=37.97 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL-----MGLSLEQQE 174 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~g~~p~~~t 174 (442)
..++..+...|+.++|...+.... .. -.-+...|..+|.+|.+.|+..+|.+.|+.... .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~-~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALT-FE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 456677888999999999988887 33 144778999999999999999999999998753 499998775
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.38 E-value=9.8 Score=28.32 Aligned_cols=64 Identities=8% Similarity=0.117 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhC-----CCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEF-----NVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~-----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.-+-.|-..+.+.|+++.|...|++..... .-.+....|..|-.+|.+.|++++|..++++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334455556666677777777766654111 0012234455555666666666666666665554
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.86 E-value=17 Score=26.63 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHhhCCCCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 99 PNEASVTSVARLAASKND---GDYAFVLIKRMNNEFNVVPR-LRTYDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 99 p~~~ty~~li~~~~~~g~---~~~A~~~~~~m~~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
.|...+..+-.++...++ .++|..+|++.. .. .|+ .+....+=..+.+.|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL-~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL-QL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 455666666666654444 688888888877 32 444 3556666677788888888888888887653
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=78.56 E-value=9.7 Score=34.86 Aligned_cols=110 Identities=10% Similarity=-0.013 Sum_probs=77.9
Q ss_pred HHHHHHHHH-HHHhc--CC------HHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHH-----cCCHHHHHHHHHHH
Q 013497 101 EASVTSVAR-LAASK--ND------GDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCE-----NLEAEKAYEVEEHM 163 (442)
Q Consensus 101 ~~ty~~li~-~~~~~--g~------~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~-----~g~~~~A~~l~~~M 163 (442)
...|..++. +++.. |. ...|..++++.. .+.|+ -..|..|-..|.+ -|+.++|.+.|++-
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 455665554 34443 32 345555555555 34666 4589999999999 49999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccCC--CChHHHHHH
Q 013497 164 GLMGLSLEQQEIAALLKVSAET-GRVEKVYQYLQKLRSTVRC--VNEETGKII 213 (442)
Q Consensus 164 ~~~g~~p~~~ty~~li~~~~~~-g~~~~a~~ll~~m~~~~~~--p~~~t~~~l 213 (442)
.+.+-.-+..++...-+.++.. |+.+++.+.|++-...... |+....+.+
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8754322467778888888884 9999999999999887666 665555544
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=77.08 E-value=20 Score=26.54 Aligned_cols=71 Identities=8% Similarity=-0.123 Sum_probs=54.5
Q ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHH
Q 013497 138 RTYDPALFCFCENLEAEKAYEVEEHMGLM------GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 138 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~------g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
.-+-.|=..+.+.|+++.|...|+..... .-.+....|..|-.++.+.|++++|..++++.... .|+....
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~~ 82 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHH
Confidence 34556667788999999999998887653 12345678899999999999999999999988764 5665433
No 233
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=77.06 E-value=2.8 Score=36.24 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH---HHH
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE---ASV 104 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~---~ty 104 (442)
+.|...++.|+++....++..-...--.++..-++.|..++..+. .++++.+.+.|..++. .-+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~g~~~~~~~~~g~ 74 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-------------TEIVEFLLQLGVPVNDKDDAGW 74 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-------------HHHHHHHHHTTCCSCCCCTTSC
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-------------HHHHHHHHHhCCCCCCcCCCCC
Confidence 346677888999988888876432212234444555555666664 5566666777766543 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALL 179 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li 179 (442)
+. +...+..|+.+-+..++ +.|..++.. -.++ +...+..|+.+-+. .+.+.|..|+... -.+.+
T Consensus 75 t~-L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~g~t~L 143 (231)
T 3aji_A 75 SP-LHIAASAGXDEIVKALL-----VKGAHVNAVNQNGCTP-LHYAASKNRHEIAV----MLLEGGANPDAKDHYDATAM 143 (231)
T ss_dssp CH-HHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHH
T ss_pred CH-HHHHHHcCHHHHHHHHH-----HcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCcHH
Confidence 33 44456667766444443 344444432 3344 45555777766444 4445565544321 11233
Q ss_pred HHHHhcCCHHHHH
Q 013497 180 KVSAETGRVEKVY 192 (442)
Q Consensus 180 ~~~~~~g~~~~a~ 192 (442)
...+..|..+-+.
T Consensus 144 ~~A~~~~~~~~v~ 156 (231)
T 3aji_A 144 HRAAAKGNLKMVH 156 (231)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHcCCHHHHH
Confidence 4445566655443
No 234
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.04 E-value=11 Score=28.44 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=22.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
+.+.|++++|..+.+.+. .||...|-+|-.. +.|..+++..-+.+|..+
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 334555555554443332 4555555444332 345555555444444433
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.02 E-value=18 Score=27.25 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 153 AEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 153 ~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.=+..+-++.+-...+.|+.....+.+++|.+..++..|.++|+-.+.+.- ....+|..++.-.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqEl 89 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHHH
Confidence 335556666667778889999999999999889999999998888876643 3345676666555
No 236
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.89 E-value=4.8 Score=35.73 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=75.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLS----LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA 102 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ 102 (442)
++.|...++.|+++....++ +.|..++ ..-++.|..++..+. .++++.+.+.|..|+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~g~~~~~~ 68 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSR-------------EDIVELLLRHGADPVLR 68 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCC
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCC-------------HHHHHHHHHcCCCCccc
Confidence 45666778889887665555 4454333 223445555665554 46667777777765432
Q ss_pred H--HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 013497 103 S--VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--- 174 (442)
Q Consensus 103 t--y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--- 174 (442)
. -.+.+...+..|+.+-+..++ +.|..++.. -+++ +...+..|+.+- ++.+.+.|..++...
T Consensus 69 ~~~g~t~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~ 138 (285)
T 1wdy_A 69 KKNGATPFLLAAIAGSVKLLKLFL-----SKGADVNECDFYGFTA-FMEAAVYGKVKA----LKFLYKRGANVNLRRKTK 138 (285)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHH-----HTTCCTTCBCTTCCBH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH-----HcCCCCCccCcccCCH-HHHHHHhCCHHH----HHHHHHhCCCcccccccH
Confidence 1 123444556677765544444 345444432 3344 444567777654 445555565543210
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHH
Q 013497 175 ---------IAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 175 ---------y~~li~~~~~~g~~~~a~~ll~ 196 (442)
-.+.+...+..|..+-+..+++
T Consensus 139 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 169 (285)
T 1wdy_A 139 EDQERLRKGGATALMDAAEKGHVEVLKILLD 169 (285)
T ss_dssp HHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 1133444456777655544443
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.32 E-value=9.6 Score=28.78 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHH
Q 013497 85 GFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALF 145 (442)
Q Consensus 85 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~ 145 (442)
+.+-++.+......|+.....+.+++|-+.+++..|.++|+-.+ . ++.+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK-~-K~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK-D-KAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H-HTTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH-H-HhcCchhhHHHHHH
Confidence 34444555555667777777777777777777777777777766 2 23333344666554
No 238
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=74.98 E-value=10 Score=28.48 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=24.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 013497 147 FCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTV 202 (442)
Q Consensus 147 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~ 202 (442)
+.+.|++++|..+.+.+. .||...|-+|-.. +.|..+++..-+.+|..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC
Confidence 344555555555443332 4555555544332 4555555555555554443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=74.79 E-value=22 Score=37.26 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=45.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013497 109 RLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMG 164 (442)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~ 164 (442)
+-+...|+++.|+++-+.-. .+.|+. .||-.|..+|.+.|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34566899999999998877 457775 799999999999999999999999884
No 240
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=71.97 E-value=51 Score=33.13 Aligned_cols=126 Identities=8% Similarity=-0.044 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND----------GDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCE 149 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~----------~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~ 149 (442)
.-++|++.++++.+.... +..+|+.-=..+.+.|+ ++++++.++.+. .. .| +..+|+.---.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l-~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHH
Confidence 356788888888775433 45566655555555556 899999999998 43 34 44567776667778
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhccCCCChHHHHH
Q 013497 150 NL--EAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETG-RVEKVYQYLQKLRSTVRCVNEETGKI 212 (442)
Q Consensus 150 ~g--~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~a~~ll~~m~~~~~~p~~~t~~~ 212 (442)
.| +++++.+.++.+.+.... +...|+.---.+.+.| ..+++.+.+.++.+.. .-+.+.|+-
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~ 183 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 183 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHH
Confidence 88 779999999999987644 7788887777777888 8899999998886542 223455543
No 241
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=71.95 E-value=5.8 Score=33.22 Aligned_cols=158 Identities=9% Similarity=0.008 Sum_probs=79.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS--VTSV 107 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t--y~~l 107 (442)
|...+..|+.+....++..-...--..|..-++.|..++..+. .++++.+.+.|..|+... -.+.
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~g~t~ 75 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-------------IEIAKALIDRGADINLQNSISDSP 75 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCCCCCCCCCH
Confidence 3445667888887777653221101223334455555666554 556666677777665322 1233
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC---CHHHHHHHHHHHH
Q 013497 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMG-LSL---EQQEIAALLKVSA 183 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g-~~p---~~~ty~~li~~~~ 183 (442)
+...+..|+.+-+..+++.-. ..--.++..-.++ +...+..|+.+-+..+++. | ..+ |..-.+.|..+.
T Consensus 76 l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~- 148 (201)
T 3hra_A 76 YLYAGAQGRTEILAYMLKHAT-PDLNKHNRYGGNA-LIPAAEKGHIDNVKLLLED----GREDIDFQNDFGYTALIEAV- 148 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC-CCTTCCCTTSCCS-HHHHHHTTCHHHHHHHHHH----CCCCTTCCCTTSCCHHHHHH-
T ss_pred HHHHHHcCCHHHHHHHHhccC-cccccccCCCCcH-HHHHHHcCCHHHHHHHHHc----CCCCcCCCCCCCCCHHHHHH-
Confidence 445567788877766664422 1101122222333 4555677887655555443 3 222 222233444443
Q ss_pred hcCC-HHHHHHHHHHHHhccCCCCh
Q 013497 184 ETGR-VEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 184 ~~g~-~~~a~~ll~~m~~~~~~p~~ 207 (442)
..+. ...-.++++.+.+.|..|+.
T Consensus 149 ~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 149 GLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HhccchhhHHHHHHHHHHCCCCCCc
Confidence 4443 33335566666677766553
No 242
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.38 E-value=41 Score=27.10 Aligned_cols=133 Identities=12% Similarity=0.148 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
.++++.++..+.... .+..-||-+|--....-+-+-..++++.+-+-+.+.| .-..-.+|.+|.+.|.
T Consensus 22 ~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~-C~NlKrVi~C~~~~n~-------- 89 (172)
T 1wy6_A 22 YIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK-CQNLKSVVECGVINNT-------- 89 (172)
T ss_dssp CHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG-CSCTHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh-hhcHHHHHHHHHHhcc--------
Confidence 577788888877643 3556677777666666777777777777652333332 1234455666666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHhccccCCCcccchhhHHHHHHh
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLK 238 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~~~a~~~ 238 (442)
+......-++.+...|.-|+..+++.++.. ..+|++...-.|-++| .+.|.....-+.+++|.+.
T Consensus 90 ----------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay--~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 ----------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANAL--RRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ----------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHT
T ss_pred ----------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHH--HHhcchhhHHHHHHHHHHh
Confidence 333456778889999999999999998633 4578888888889999 6666555555666666554
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=68.92 E-value=65 Score=33.64 Aligned_cols=129 Identities=10% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCCCCCchhh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhHhh-----CC
Q 013497 60 HFNALLYLCSDSATDPSSKDSA-LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKND-GDYAFVLIKRMNNE-----FN 132 (442)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~-~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~~~~~m~~~-----~g 132 (442)
--.+|+..+...+ + .+.|.++|+++.+....-+.....++|..+.+.++ --+|.+++.+..+. ..
T Consensus 250 L~~~Ll~~~~~t~--------~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 250 LMYSLKSFIAITP--------SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHTCG--------GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccc--------cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 3455566666554 4 68899999999876433233333444444444332 22355554443201 11
Q ss_pred CCCCccc------H-HHHH----HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 133 VVPRLRT------Y-DPAL----FCFCENLEAEKAYEVEEHMGLMGLSL-EQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 133 ~~p~~~t------y-~~li----~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
+.+.... + ..|+ ..+...|+++-|+++-+.-... .| +-.||..|..+|.+.|+++.|+-.+.-+
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2222111 1 1122 3456789999999998887654 45 4689999999999999999999888876
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=66.03 E-value=53 Score=26.80 Aligned_cols=114 Identities=14% Similarity=0.003 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHhHhhCCCCCCc----ccHHHHHHHH---HHcCCHHHHHHHHHHHHHC
Q 013497 100 NEASVTSVARLAASKNDG------DYAFVLIKRMNNEFNVVPRL----RTYDPALFCF---CENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~------~~A~~~~~~m~~~~g~~p~~----~ty~~li~~~---~~~g~~~~A~~l~~~M~~~ 166 (442)
|--+|=..|...-+.|++ +...++|+... . .++|+. +.|--|.--| -..+|+++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi-a-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI-E-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH-H-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH-H-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666667777777777 77778887765 2 455543 2222222111 2348999999999999765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 167 GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 167 g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.-.- ...|-..-..=.+.|++.+|.+++..-...+-.|.. ...+.+.-+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHhh
Confidence 3222 677777777777899999999999998876654443 333334433
No 245
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=65.67 E-value=8 Score=31.22 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=7.4
Q ss_pred HHHHhcCCHHHHHHHH
Q 013497 31 QSCTKSKDLTTAISLY 46 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf 46 (442)
...++.|+.+....++
T Consensus 13 ~~A~~~g~~~~v~~ll 28 (165)
T 3twr_A 13 LEAAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHHHTCHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHH
Confidence 3344455555444443
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.78 E-value=46 Score=26.59 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 155 KAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 155 ~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+..+-++.+....+.|+.....+-+++|.+..++..|.++|+-.+.+. .+...+|..++.-.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqEl 132 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHHH
Confidence 445556666677899999999999999999999999999998887764 33455677776655
No 247
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=62.45 E-value=36 Score=26.68 Aligned_cols=83 Identities=14% Similarity=-0.007 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhHhhCCCCC-CcccH-HHHHHHHHHcCCHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDY---AFVLIKRMNNEFNVVP-RLRTY-DPALFCFCENLEAEK 155 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~~~~~m~~~~g~~p-~~~ty-~~li~~~~~~g~~~~ 155 (442)
.+..+.+-|......|. |+..|--.+.-++++.....+ ++.++++.. +.+ .| +.+-| =.|--++.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34555666665555454 566666666777777777666 888888776 432 23 12222 223345557777777
Q ss_pred HHHHHHHHHHC
Q 013497 156 AYEVEEHMGLM 166 (442)
Q Consensus 156 A~~l~~~M~~~ 166 (442)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777766653
No 248
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=61.94 E-value=43 Score=24.30 Aligned_cols=62 Identities=11% Similarity=-0.138 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHH
Q 013497 82 LRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCF 147 (442)
Q Consensus 82 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~ 147 (442)
.++|..+|++..+... -++.+...+-..+.+.|++++|...++.+. .. .|+......+....
T Consensus 25 ~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l-~~--~p~~~~~~~i~~~I 86 (93)
T 3bee_A 25 TDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLL-DS--NDPNLDRVTIIESI 86 (93)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TC--CCTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--CCCCccHHHHHHHH
Confidence 6889999999877543 256777777789999999999999999998 43 45533444444443
No 249
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=61.92 E-value=6.7 Score=33.54 Aligned_cols=138 Identities=16% Similarity=0.022 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH------H
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE------A 102 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~------~ 102 (442)
-|...++.|+.+....+++.-.......|..-++.|..++..+. .++++.+.+.|..++. .
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~~~~~~~~~~~~~~ 71 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA-------------HEITSFLLSKMENVNLDDYPDDS 71 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHTCTTCCGGGCCCTT
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCC-------------HHHHHHHHhccccccccccCCCC
Confidence 45566778888887777765433222244444555555666554 5666777777743332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCC--CCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--H
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFN--VVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--I 175 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y 175 (442)
-++. +...+..|+.+-+..++ +.| ..++ ..-.++ +...+..|+.+-+ +.+.+.|..++... -
T Consensus 72 g~t~-L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~~~g~t~-L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g 140 (228)
T 2dzn_A 72 GWTP-FHIACSVGNLEVVKSLY-----DRPLKPDLNKITNQGVTC-LHLAVGKKWFEVS----QFLIENGASVRIKDKFN 140 (228)
T ss_dssp SCCH-HHHHHHHCCHHHHHHHH-----SSSSCCCTTCCCTTCCCH-HHHHHHTTCHHHH----HHHHHTTCCSCCCCTTS
T ss_pred CCCH-HHHHHHcCCHHHHHHHH-----hCCCCcccccCCcCCCCH-HHHHHHcCCHhHH----HHHHHcCCCccccCCCC
Confidence 2333 44446667766544444 333 2222 223344 4455577776544 44445565554221 1
Q ss_pred HHHHHHHHhcCCHHH
Q 013497 176 AALLKVSAETGRVEK 190 (442)
Q Consensus 176 ~~li~~~~~~g~~~~ 190 (442)
.+.+...+..|..+-
T Consensus 141 ~t~L~~A~~~~~~~~ 155 (228)
T 2dzn_A 141 QIPLHRAASVGSLKL 155 (228)
T ss_dssp CCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHcCCHHH
Confidence 123344456666543
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=61.48 E-value=24 Score=28.13 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=21.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 91 QMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 91 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
.+......|+.....+.+++|-+.+++..|.++|+-.+
T Consensus 78 ~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 78 TLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334455555555555555555555555655555554
No 251
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=59.95 E-value=11 Score=29.98 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=34.0
Q ss_pred HHHHHHHhcCeEEeC---CCCCCccHHHHHHHHhcCcEEEecCccccchh
Q 013497 379 NLVEEWNEKGVLYMT---PHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIF 425 (442)
Q Consensus 379 ~~~~~~~~~~~~~~~---~~~~~DD~~~l~aa~~~~~~~vsnD~~rdh~~ 425 (442)
++++++++...+=+. |.++.=|--++-.|...++.+||||..---..
T Consensus 63 ~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~~~~~lvTnD~~L~kvA 112 (134)
T 3ix7_A 63 ETLERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALVTNDHALLQMA 112 (134)
T ss_dssp HHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHHTTCEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHHhCCEEEeCCHHHHHHH
Confidence 467777776555333 44456699999999999999999997544433
No 252
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.95 E-value=9.5 Score=32.66 Aligned_cols=15 Identities=13% Similarity=-0.026 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHH
Q 013497 32 SCTKSKDLTTAISLY 46 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf 46 (442)
..++.|+++....++
T Consensus 15 ~A~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 15 KATQYGIYERCRELV 29 (240)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHH
Confidence 345566665544443
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=55.83 E-value=24 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDL------TTAISLYESAHS 51 (442)
Q Consensus 25 ~~~~li~~~~k~g~~------~~A~~lf~~m~~ 51 (442)
+|=..|...-+.|+. ++..++|++...
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia 47 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE 47 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH
Confidence 454555555555777 777777777654
No 254
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.54 E-value=37 Score=26.62 Aligned_cols=67 Identities=7% Similarity=-0.044 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE--AEKAYEVEEHMGLMGLSLEQ 172 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~g~~p~~ 172 (442)
.+.+|.-|...|+.++|.+.++++. ...+. ..+++..+..++-+.++ .+.+..++..+...|+.+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~-~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT-CGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC-CCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567778888888888888888876 22221 13444555555555432 35566777777776665443
No 255
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=55.36 E-value=20 Score=29.29 Aligned_cols=14 Identities=0% Similarity=0.015 Sum_probs=6.4
Q ss_pred HhcCCHHHHHHHHH
Q 013497 34 TKSKDLTTAISLYE 47 (442)
Q Consensus 34 ~k~g~~~~A~~lf~ 47 (442)
++.|+.+.+..+++
T Consensus 13 ~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 13 CREGNAVAVRLWLD 26 (179)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444443
No 256
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=53.90 E-value=15 Score=29.75 Aligned_cols=147 Identities=12% Similarity=0.063 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS--VTSV 107 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t--y~~l 107 (442)
|...++.|+++....+++.-...--..|..-++.|..++..+. .++++.+.+.|..++... -.+.
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~g~t~ 72 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE-------------IETVRFLLEWGADPHILAKERESA 72 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCchhhcccCCCH
Confidence 4456778888877666654221001223344455555665553 455555556666554321 1234
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 013497 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVS 182 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~ 182 (442)
+...+..|+.+-+..++ +.|..++.. -.++ +...+..|+.+-+. .+.+.|..++... -.+-+...
T Consensus 73 L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~t~l~~A 142 (172)
T 3v30_A 73 LSLASTGGYTDIVGLLL-----ERDVDINIYDWNGGTP-LLYAVRGNHVKCVE----ALLARGADLTTEADSGYTPMDLA 142 (172)
T ss_dssp HHHHHHTTCHHHHHHHH-----TTTCCTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHCCCHHHHHHHH-----HcCCCCCCCCCCCCCH-HHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHH
Confidence 45556777766444443 445555443 2344 44455677765444 4445565554321 11234444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 013497 183 AETGRVEKVYQYLQKLR 199 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~ 199 (442)
+..|..+-+.-+++...
T Consensus 143 ~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 143 VALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHH
Confidence 56667666555555443
No 257
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=53.33 E-value=21 Score=30.52 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH-
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQN----LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS- 103 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g----~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t- 103 (442)
.|...++.|+.+-+..+++.-.... -..|..-++.|..++..+. .++.+.+.+.|..++...
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~ 106 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN-------------VNLVRALLARGASVSARAT 106 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC-------------HHHHHHHHhCCCCCCcccC
Confidence 4555566788776666665422210 1112233445555665553 456666677777665431
Q ss_pred --------------HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 013497 104 --------------VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMG 167 (442)
Q Consensus 104 --------------y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g 167 (442)
-.+.+...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+..+++.+.+.|
T Consensus 107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI-----EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred CcceeecccccccCCCCHHHHHHHcCCHHHHHHHH-----HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 223445556677766554444 3455554432 2244566678899988888888888887
Q ss_pred CCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013497 168 LSL---------EQQEIAALLKVSAETGRVEKVYQYLQKL 198 (442)
Q Consensus 168 ~~p---------~~~ty~~li~~~~~~g~~~~a~~ll~~m 198 (442)
..+ |..-.+. +...++.|..+-+..+++.=
T Consensus 182 ~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 182 GGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHH
T ss_pred CchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcC
Confidence 543 3333333 44445677776665555443
No 258
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=52.88 E-value=37 Score=26.65 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---H
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---S 103 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---t 103 (442)
++.|...++.|+.+....+++.-. .+..+....+.|..++..+. .++++.+.+.|..++.. -
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~g 67 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGH-------------FSTTEVLLRAGVSRDARTKVD 67 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTC--CCCCCTTCCCHHHHHHHHTC-------------HHHHHHHHTTTCCTTCCCTTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCC--CCCcCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCCCCCCC
Confidence 445566677788877766665422 12223334445555655553 45566666677655422 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
.| .+...+..|+.+-+. .+. +.|..++... -.+.+...+..|..+- .+.+.+.|..++
T Consensus 68 ~t-~L~~A~~~~~~~~v~----~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~ga~~~ 127 (153)
T 1awc_B 68 RT-PLHMAASEGHANIVE----VLL-KHGADVNAKDMLKMTALHWATEHNHQEV----VELLIKYGADVH 127 (153)
T ss_dssp CC-HHHHHHHHTCHHHHH----HHH-TTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTT
T ss_pred CC-HHHHHHHcChHHHHH----HHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHcCCCcc
Confidence 22 333445566665433 334 4455554432 1233444456676643 344445555443
No 259
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.80 E-value=59 Score=25.43 Aligned_cols=71 Identities=13% Similarity=0.119 Sum_probs=50.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCCCChHHH
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR--VEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
..+.+|.-|...|+.++|.+-++++...... ...+..++..++-+.+. .+.+..+|..+...++-+.....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 3567899999999999999999998532222 34555666666665542 46788899999877765554433
No 260
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=51.79 E-value=50 Score=26.22 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 013497 30 LQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV--TSV 107 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty--~~l 107 (442)
|...++.|+.+....+++.-.... .+|..-++.|..++..+. .++.+.+.+.|..|+.... .+.
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~g~t~ 72 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQ-------------IAVVEFLLQNGADPQLLGKGRESA 72 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCC-------------HHHHHHHHHcCCCCCCcCCCCCcH
Confidence 455677888877766665421111 223334455555665553 4566666667766553211 234
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 013497 108 ARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVS 182 (442)
Q Consensus 108 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~ 182 (442)
+...+..|+.+-+..+++. |..++. .-+++| ...+..|..+-+. .+.+.|..|+... -.+-+...
T Consensus 73 L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~~g~t~L-~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A 142 (167)
T 3v31_A 73 LSLACSKGYTDIVKMLLDC-----GVDVNEYDWNGGTPL-LYAVHGNHVKCVK----MLLESGADPTIETDSGYNSMDLA 142 (167)
T ss_dssp HHHHHHHTCHHHHHHHHHH-----TCCTTCCCTTSCCHH-HHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHC-----CCCCCcCCCCCCCHH-HHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHH
Confidence 4555667777655555543 334443 234444 4455677765444 4445565553221 12344455
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 013497 183 AETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~m~~ 200 (442)
+..|..+-+..+++...+
T Consensus 143 ~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 143 VALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHH
Confidence 567777766666665544
No 261
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=50.78 E-value=87 Score=24.46 Aligned_cols=98 Identities=16% Similarity=0.052 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhcCCHH
Q 013497 115 NDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEK---AYEVEEHMGLMGLSL-EQ-QEIAALLKVSAETGRVE 189 (442)
Q Consensus 115 g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~---A~~l~~~M~~~g~~p-~~-~ty~~li~~~~~~g~~~ 189 (442)
..+..+.+-+.+.. ..|. |+..+--.+--++.+...... +..+++++...+ .| .. ...-.|--++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~-~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEK-AAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHH-HHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHh-ccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 34445555565554 3332 555554445556777776555 899999988764 23 22 33334556788999999
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 190 KVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 190 ~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+|.+.++.+.+. .|+..-...|....
T Consensus 92 ~A~~~~~~lL~~--eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 92 KALKYVRGLLQT--EPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999876 67655555554443
No 262
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.84 E-value=24 Score=29.20 Aligned_cols=146 Identities=11% Similarity=0.039 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC---HH
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN---EA 102 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~---~~ 102 (442)
.|...++.|+.+-+ +.+.+.|..|+ ....+.|..++..+. .+-+..+++ ..+..++ ..
T Consensus 42 ~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~---~~~~~~~~~~~~ 105 (201)
T 3hra_A 42 PLNIAVHNNDIEIA----KALIDRGADINLQNSISDSPYLYAGAQGR---------TEILAYMLK---HATPDLNKHNRY 105 (201)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTC---------HHHHHHHHH---HSCCCTTCCCTT
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHh---ccCcccccccCC
Confidence 34555667776544 44445565443 233455555655543 443333332 2333322 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE-AEKAYEVEEHMGLMGLSLEQQEIA--ALL 179 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~l~~~M~~~g~~p~~~ty~--~li 179 (442)
-. +.+...++.|+.+-+..+++.-..... .+|..-.++|..+. ..|+ ...-.++.+.+.+.|..|+..... +-+
T Consensus 106 g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 182 (201)
T 3hra_A 106 GG-NALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM 182 (201)
T ss_dssp SC-CSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CC-cHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCccCCCCCCHH
Confidence 22 334455677888777666655310111 22334455655554 4454 333466777778888766543211 234
Q ss_pred HHHHhcCCHHHHHH
Q 013497 180 KVSAETGRVEKVYQ 193 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ 193 (442)
...++.|..+-+.-
T Consensus 183 ~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 183 DYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHhHHHH
Confidence 44455666554433
No 263
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=48.55 E-value=24 Score=30.06 Aligned_cols=151 Identities=13% Similarity=-0.022 Sum_probs=81.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC------
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP------ 99 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p------ 99 (442)
.|...++.|+.+....+++. .|..+ |..-++.|..++..+ ..+-+..++ +.|..+
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll----~~~~~~~~~~~~ 69 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYD---------NLEAAMVLM----EAAPELVFEPMT 69 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTT---------CHHHHHHHH----HHCGGGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcC---------CHHHHHHHH----HcCchhcccccc
Confidence 45566778887766655543 24333 333445555566555 344444444 433321
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---------------cHHHHHHHHHHcCCHHHHHHHHHH
Q 013497 100 --NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---------------TYDPALFCFCENLEAEKAYEVEEH 162 (442)
Q Consensus 100 --~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---------------ty~~li~~~~~~g~~~~A~~l~~~ 162 (442)
|..-++ .+...+..|+.+-+..+++ .|..++.. .-.+.+...+..|+.+-+ +.
T Consensus 70 ~~~~~g~t-~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~ 139 (232)
T 2rfa_A 70 SELYEGQT-ALHIAVINQNVNLVRALLA-----RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV----RL 139 (232)
T ss_dssp STTTTTCC-HHHHHHHTTCHHHHHHHHH-----TTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH----HH
T ss_pred ccCCCCcC-HHHHHHHcCCHHHHHHHHh-----CCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHH----HH
Confidence 112233 3445567788765555543 34444443 123345555667776544 44
Q ss_pred HHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 013497 163 MGLMGLSLEQQE--IAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (442)
Q Consensus 163 M~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p 205 (442)
+.+.|..++... -.+-+...+..|..+-+..+++.+.+.|..+
T Consensus 140 Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 140 LIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 455666554221 1234555567888888878888887776544
No 264
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.81 E-value=33 Score=27.86 Aligned_cols=69 Identities=9% Similarity=-0.028 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE--AEKAYEVEEHMGLMGLSLEQQ 173 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~g~~p~~~ 173 (442)
..+.+|.-|...|+.++|.+.++++. ...+. ..+++..+..++-+.++ .+.+..++..+...|+.+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~-~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT-CGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC-CCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35678888888899999999998887 32222 23455556666655433 445677888887777665443
No 265
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=46.30 E-value=9.8 Score=30.26 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=69.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH---HH
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE---AS 103 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~---~t 103 (442)
+.|...++.|+.+.+..+++. .... -..|..-.+.|.. ...+ . .++.+.+.+.|..++. .-
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~--~~~~--------~----~~~v~~Ll~~g~~~~~~~~~g 68 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV--MMFG--------S----TAIALELLKQGASPNVQDTSG 68 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH--SCTT--------C----HHHHHHHHHTTCCTTCCCTTS
T ss_pred hHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH--HHcC--------C----HHHHHHHHHCCCCCCCcCCCC
Confidence 445566778888888888776 2111 1123233334433 3333 3 3455555566665543 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
.| .+...+..|+.+-+..++ +.|..|+. .-.++ +...+..|+.+-+..+++. ..... .|..-. +-+.
T Consensus 69 ~t-~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~-t~l~ 138 (156)
T 1bd8_A 69 TS-PVHDAARTGFLDTLKVLV-----EHGADVNVPDGTGALP-IHLAVQEGHTAVVSFLAAE-SDLHR-RDARGL-TPLE 138 (156)
T ss_dssp CC-HHHHHHHTTCHHHHHHHH-----HTTCCSCCCCTTSCCH-HHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSC-CHHH
T ss_pred CC-HHHHHHHcCcHHHHHHHH-----HcCCCCCCcCCCCCcH-HHHHHHhChHHHHHHHHhc-cCCCC-cCCCCC-CHHH
Confidence 33 344445667766554444 33444433 33444 4445567777666555544 11111 122212 2333
Q ss_pred HHHhcCCHHHHHHHHH
Q 013497 181 VSAETGRVEKVYQYLQ 196 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~ 196 (442)
..+..|..+-+.-+++
T Consensus 139 ~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 139 LALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHSCCHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHh
Confidence 4456676655554443
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.30 E-value=1.4e+02 Score=28.64 Aligned_cols=101 Identities=11% Similarity=-0.009 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC--CcccHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHH----
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVP--RLRTYDPALFCFCENLEAEKAYEVEEHMGLM---GLSLEQQ---- 173 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~---- 173 (442)
+...+-.-|.+.|+.+.|.+.+.++. .....+ .+..|-.+|..+...+++..|....+..... +-.|+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 66788999999999999999999998 432222 3456788889999999999999988887532 3223221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 174 EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 174 ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.|..++ +...+++..|...|.+....-....
T Consensus 212 ~~~gl~--~l~~r~f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 212 TYYGIH--CLAVRNFKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp HHHHHG--GGGTSCHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHH--HHHhChHHHHHHHHHHHhccCCccc
Confidence 222222 2347889999999888765433333
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=45.91 E-value=1e+02 Score=33.82 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=72.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-----------------------CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHH
Q 013497 32 SCTKSKDLTTAISLYESAHSQNLRL-----------------------SLHHFNALLYLCSDSATDPSSKDSALRHGFRV 88 (442)
Q Consensus 32 ~~~k~g~~~~A~~lf~~m~~~g~~p-----------------------~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l 88 (442)
+|...|++++|.+.|.+.- .|+.. -..=|.-++.++.+.+ .++.+.++
T Consensus 851 ~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~--------~~~~vi~f 921 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES--------AYIDALEF 921 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS--------CCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 4667899999999997742 11111 1123555666666666 45555555
Q ss_pred HHHHHhC-CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHH
Q 013497 89 FDQMLSN-NVIP-N--EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKA 156 (442)
Q Consensus 89 ~~~M~~~-g~~p-~--~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A 156 (442)
-....+. +..+ + ...|+.+.+++...|++++|...+-.+. .... .......||..+|..|..+.-
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~--r~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TTPL--KKSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HSSS--CHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CHHH--HHHHHHHHHHHHHhCCChhhh
Confidence 4433332 2121 1 2258889999999999999999998887 5433 345677788888887776543
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=45.04 E-value=97 Score=23.32 Aligned_cols=78 Identities=8% Similarity=-0.099 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..++|..+-+.+...|. .++.--+=+..+...|++++|..+.+.+- .||+..|-+|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 57888888888887765 44444455567888999999999876544 899999887754 4788888888877
Q ss_pred HHHHHCC
Q 013497 161 EHMGLMG 167 (442)
Q Consensus 161 ~~M~~~g 167 (442)
..|..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 7777665
No 269
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.96 E-value=1.4e+02 Score=25.98 Aligned_cols=91 Identities=9% Similarity=-0.031 Sum_probs=59.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhh-CCCCC----CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNE-FNVVP----RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~-~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
-|+.+....++++|.+++++.++. .++++ ....-...|..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 456788899999999999987621 12222 112223334444444444445556666633 4566667788899
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 013497 182 SAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~ 200 (442)
+.+.|..++|.++|-+.+.
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 9999999999999987754
No 270
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.73 E-value=25 Score=32.60 Aligned_cols=150 Identities=13% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 23 ETNFLINLQSCTKSKDLTTAISLYESAHSQNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 23 ~~~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
|..-.+.|...+..|+.+-+..+++ .|..++. .-++.|..++..+. .++.+.+.+.|..+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~-------------~~~v~~Ll~~g~~~ 79 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGC-------------VDTAKYLASVGEVH 79 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCC-------------HHHHHHHHHHCCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCC-------------HHHHHHHHHCCCCc
Confidence 3444455666677888776655554 4544432 33445555666554 45555666666655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--------------------ccHHHHHHHHHHcC--CHHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--------------------RTYDPALFCFCENL--EAEKAY 157 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--------------------~ty~~li~~~~~~g--~~~~A~ 157 (442)
+...-.+.+...+..|+.+-+..+++.-. ..|..|+. .-.++| ...+..| ..+-+.
T Consensus 80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~~v~ 157 (364)
T 3ljn_A 80 SLWHGQKPIHLAVMANKTDLVVALVEGAK-ERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLEMIK 157 (364)
T ss_dssp CCBTTBCHHHHHHHTTCHHHHHHHHHHHH-HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHHHHH
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHhcc-ccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHHHHH
Confidence 54233345555677889888888887755 44444433 234444 4455667 555444
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHH
Q 013497 158 EVEEHMGLMGLSLEQQ---EIAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 158 ~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~ll~ 196 (442)
.++ +.|..++.. -.+. +...+..|..+-+..+++
T Consensus 158 ~Ll----~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 158 ILV----QLGASPTAKDKADETP-LMRAMEFRNREALDLMMD 194 (364)
T ss_dssp HHH----HHTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH
T ss_pred HHH----HcCCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHh
Confidence 444 445544322 2233 334456777765555444
No 271
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.42 E-value=2e+02 Score=26.85 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR--VEKVYQYLQKLRSTVRCVNEETGKIIEDW 216 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~ll~~m~~~~~~p~~~t~~~li~~ 216 (442)
..+.+|.-|...|+.++|...++++...... ...+..++..++-+.+. .+.+.++|..+...++-........+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3678889999999999999999888643222 24455666666655433 45678888888877765554444444333
Q ss_pred h
Q 013497 217 F 217 (442)
Q Consensus 217 ~ 217 (442)
+
T Consensus 298 l 298 (358)
T 3eiq_C 298 Y 298 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 272
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=44.18 E-value=51 Score=26.70 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCCCChHHH
Q 013497 139 TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR--VEKVYQYLQKLRSTVRCVNEETG 210 (442)
Q Consensus 139 ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~ll~~m~~~~~~p~~~t~ 210 (442)
..+.+|.-|...|+.++|.+.++++..... ....++.++..++-+.+. .+.+..+|..+...++.+.....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 457789999999999999999999853222 234556666666665432 56688888888877665554433
No 273
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=44.14 E-value=76 Score=26.22 Aligned_cols=159 Identities=9% Similarity=-0.025 Sum_probs=86.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---HHH
Q 013497 31 QSCTKSKDLTTAISLYESAHSQNLR-LS-LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SVT 105 (442)
Q Consensus 31 ~~~~k~g~~~~A~~lf~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---ty~ 105 (442)
...++.|+++....++.. ++. .+ ..-++.|..++..+ ..+.-.++.+.+.+.|..+|.. -.|
T Consensus 11 ~~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~---------~~~~~~~iv~~Ll~~Gadvn~~d~~g~T 77 (186)
T 3t8k_A 11 SAAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNN---------NDEARYKISMFLINKGADIKSRTKEGTT 77 (186)
T ss_dssp HHHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCS---------CHHHHHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred HHHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcC---------CcchHHHHHHHHHHCCCCCCCCCCCCCc
Confidence 344677998886666643 321 11 11233444354433 4555567788888888876543 334
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhHhhCCCCCCcccH---HHHHHHHHHcCCH-HHHHHHHHHHHH-CCCCCCHHHH--HH
Q 013497 106 SVARLAAS-KNDGDYAFVLIKRMNNEFNVVPRLRTY---DPALFCFCENLEA-EKAYEVEEHMGL-MGLSLEQQEI--AA 177 (442)
Q Consensus 106 ~li~~~~~-~g~~~~A~~~~~~m~~~~g~~p~~~ty---~~li~~~~~~g~~-~~A~~l~~~M~~-~g~~p~~~ty--~~ 177 (442)
.|.-++.. ..+.....++.+.+. +.|..++.... ++.+...+..|.. ..-.++++.+.+ .|..++.... .+
T Consensus 78 pLh~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T 156 (186)
T 3t8k_A 78 LFFPLFQGGGNDITGTTELCKIFL-EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT 156 (186)
T ss_dssp THHHHHHHCTTCHHHHHHHHHHHH-HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhhHHHHHHHHH-HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence 44433332 223445567777777 77877776542 1344444444433 344567777777 7776654321 13
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccC
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVR 203 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~ 203 (442)
-+...++.|..+-+.-+.+.+.+.+.
T Consensus 157 pL~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 157 ALEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 34444566776555555555554443
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.45 E-value=94 Score=23.35 Aligned_cols=78 Identities=9% Similarity=-0.082 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..++|..+-+.+...|. .++.--+=+..+...|++++|..+.+.+ +.||+..|-+|-. .+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 57888888888887765 4444445556788899999999887554 3899999887654 4889988888888
Q ss_pred HHHHHCC
Q 013497 161 EHMGLMG 167 (442)
Q Consensus 161 ~~M~~~g 167 (442)
..|..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 7887765
No 275
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=41.16 E-value=5.2 Score=35.18 Aligned_cols=118 Identities=10% Similarity=-0.065 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHh--cCCCCCCchhhHHHHHHHHHHHHhCCCC
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLS-------LHHFNALLYLCSD--SATDPSSKDSALRHGFRVFDQMLSNNVI 98 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~-------~~ty~~ll~~~~~--~~~~~~~~~~~~~~a~~l~~~M~~~g~~ 98 (442)
+.|...++.|+.+....+++.+.+.|..++ ..-.+.|..++.. .+ ..+-+..+++.-...+..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g--------~~~~v~~Ll~~g~~~~~~ 75 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDG--------VNACIMPLLQIDKDSGNP 75 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTT--------BCTTHHHHHHHHHHTTCS
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccc--------hHHHHHHHHhcCCcccch
Confidence 446667788999988888888877776544 3445566656654 13 344455555443322211
Q ss_pred ----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---------------HHHHHHHHHHcCCH
Q 013497 99 ----------PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT---------------YDPALFCFCENLEA 153 (442)
Q Consensus 99 ----------p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t---------------y~~li~~~~~~g~~ 153 (442)
.|..-+|. +...+..|+.+-+..+++ .|..++... -.+.|...+..|+.
T Consensus 76 ~~~~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~-----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~ 149 (256)
T 2etb_A 76 KPLVNAQCTDEFYQGHSA-LHIAIEKRSLQCVKLLVE-----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQW 149 (256)
T ss_dssp SCGGGCCCCSTTTTTCCH-HHHHHHTTCHHHHHHHHH-----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCH
T ss_pred hhhcccccccccccCCCH-HHHHHHcCCHHHHHHHHH-----cCCCCCcccccccccccccccccCCCCHHHHHHHcCCH
Confidence 11222333 444566777665554443 344554432 22344455567776
Q ss_pred HHHHHH
Q 013497 154 EKAYEV 159 (442)
Q Consensus 154 ~~A~~l 159 (442)
+-+..+
T Consensus 150 ~~v~~L 155 (256)
T 2etb_A 150 DVVTYL 155 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=41.16 E-value=29 Score=30.35 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc---ccHHHHHHHHHHc
Q 013497 86 FRVFDQMLSNNVIPNEAS------------VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL---RTYDPALFCFCEN 150 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~t------------y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~---~ty~~li~~~~~~ 150 (442)
.++++.+.+.|..++... -.+.+...+..|+.+-+..+++. .|..++. .-.+++.. .+..
T Consensus 118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~-a~~~ 192 (285)
T 1wdy_A 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNALIH-ALLS 192 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHH-HHHC
T ss_pred HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCCHHHH-HHHc
Confidence 355566666666554320 11344555667776655555533 2333332 33444444 4456
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 013497 151 LEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVSAETGRVEKVYQYL 195 (442)
Q Consensus 151 g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~ll 195 (442)
|......++.+.+.+.|..++... -.+.+...++.|..+-+..++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 666556677777777776654321 123344445666665444433
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.19 E-value=2.8e+02 Score=26.63 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHH----hcCCCCCCchhhHHHHHHHHHHHHh--CC-
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAH-SQNLRLSLHHFNALLYLCS----DSATDPSSKDSALRHGFRVFDQMLS--NN- 96 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~-~~g~~p~~~ty~~ll~~~~----~~~~~~~~~~~~~~~a~~l~~~M~~--~g- 96 (442)
....++..|.+.++++...+.+.-+. ..|..+.. ...++..|. ... ....+.-..+.+.... .|
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~------~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSK------SLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHC------TTHHHHHHHHHHCCSSSSSCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHHhccc
Confidence 66677778888888877766666544 33432222 234443221 111 0011111112111110 11
Q ss_pred CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhh-CCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 013497 97 VIP---NEASVTSVARLAASKNDGDYAFVLIKRMNNE-FNVVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGL---- 165 (442)
Q Consensus 97 ~~p---~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~-~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~---- 165 (442)
+-. .......|...|-..|++.+|..++.++..+ .|..+. +..|.--+..|...+++.+|..++.....
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1223456788899999999999999998622 232221 35677788899999999999999988742
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 166 MGLSLE--QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 166 ~g~~p~--~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
....|+ ...|..++..+...+++.+|.+.|.+.-.
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 222222 24566777778889999999988887754
No 278
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=37.61 E-value=2.1e+02 Score=31.46 Aligned_cols=114 Identities=12% Similarity=-0.027 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-----------------------ccHHHHHHHHHHcCCHHHH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-----------------------RTYDPALFCFCENLEAEKA 156 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-----------------------~ty~~li~~~~~~g~~~~A 156 (442)
+...-=.+-.+|..+|++++|.+.|.+.. .|+.++. .-|..++..|-+.+..+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 44433344567888999999999997743 2222111 1277888899999999988
Q ss_pred HHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 157 YEVEEHMGLMGLSLEQ----QEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 157 ~~l~~~M~~~g~~p~~----~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
.++-..-.+..-.-+. ..|..+++++...|++++|+..+..+.....+ ......++...
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~l 981 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHH
Confidence 8776655443211121 25888999999999999999999888765443 33344555544
No 279
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=37.48 E-value=50 Score=27.67 Aligned_cols=140 Identities=17% Similarity=0.028 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCC-CC---C
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNV-IP---N 100 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~-~p---~ 100 (442)
+.|...++.|+.+-+..++ +.|..++ ...++.|..++..+. .++++.+.+.+. .+ +
T Consensus 27 t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~~~~~~~~~~ 89 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADA-------------QGVFQILIRNRATDLDARM 89 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHBTTSCTTCCC
T ss_pred chHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCcccCC
Confidence 4555667788876554444 4454443 233445544555443 344444444443 21 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IA 176 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~ 176 (442)
..-.+. +...+..|+.+-+..+++ .|..++... -.+.+...+..|+.+-+. .+.+.|..++... -.
T Consensus 90 ~~g~t~-L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~ 159 (223)
T 2f8y_A 90 HDGTTP-LILAARLAVEGMLEDLIN-----SHADVNAVDDLGKSALHWAAAVNNVDAAV----VLLKNGANKDMQNNREE 159 (223)
T ss_dssp TTCCCH-HHHHHHHTCHHHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCC
T ss_pred CCCCcH-HHHHHHhCcHHHHHHHHH-----cCCCCcCcCCCCCcHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCc
Confidence 222233 334456666654444443 344444322 223444555677765443 3444454443211 11
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 013497 177 ALLKVSAETGRVEKVYQY 194 (442)
Q Consensus 177 ~li~~~~~~g~~~~a~~l 194 (442)
+-+...+..|..+-+..+
T Consensus 160 t~L~~A~~~~~~~~v~~L 177 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVL 177 (223)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHH
Confidence 233334566666444433
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.24 E-value=63 Score=30.34 Aligned_cols=77 Identities=8% Similarity=-0.038 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE--AEKAYEVEEHMGLMGLSLEQQEIAALLK 180 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~g~~p~~~ty~~li~ 180 (442)
..+.+|.=|...|+.++|.+.++++. ...+.+ .+++..+..++-+.++ .+.+..++..+...|+.+.......+.+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~-~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHcc-CCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 46889999999999999999999998 433222 3456666666665443 4567888999988888765554444444
Q ss_pred H
Q 013497 181 V 181 (442)
Q Consensus 181 ~ 181 (442)
.
T Consensus 297 v 297 (358)
T 3eiq_C 297 I 297 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=37.14 E-value=67 Score=29.13 Aligned_cols=106 Identities=12% Similarity=-0.031 Sum_probs=58.0
Q ss_pred HHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHH
Q 013497 86 FRVFDQMLSNNVIPNEAS--VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVE 160 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~ 160 (442)
..+.+.+.+.|..+|... -.+.+...+..|..+.+..+++ ..|..++.. -.++|. ..++.|..+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~----~~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE----QEHIEINDTDSDGKTALL-LAVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT----STTCCTTCBCTTSCBHHH-HHHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH----hcCCcccCcCCCCCCHHH-HHHHcCCHH----HH
Confidence 345555677777665321 1234455677888776665543 234444433 234544 445778765 44
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCCh
Q 013497 161 EHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNE 207 (442)
Q Consensus 161 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 207 (442)
+.+.+.|..++..+ . +..-++.|..+ +.+.+.++|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 55567787777543 3 33345666654 44556667766663
No 282
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=36.82 E-value=38 Score=30.72 Aligned_cols=119 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHSQNLR---LSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~~g~~---p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
...|...++.|+.+....++.+ .+.. .|..-.+.|..++..+. .++.+.+.+.|..++...
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~-------------~~~v~~Ll~~g~~~~~~~ 88 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNR-------------VRIVQLLLQHGADVHAKD 88 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCCC
T ss_pred chhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCccC
Confidence 3445556678888887777753 2322 22233344444555543 456666666776654321
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 104 --VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 104 --y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
-.+.+...+..|+.+-+..++ +.|..++.. -+++| ...+..|+.+-+ +.+.+.|..|+
T Consensus 89 ~~g~t~L~~A~~~g~~~iv~~Ll-----~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~ 151 (351)
T 3utm_A 89 KGGLVPLHNACSYGHYEVTELLL-----KHGACVNAMDLWQFTPL-HEAASKNRVEVC----SLLLSHGADPT 151 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred CCCCcHHHHHHHCCCHHHHHHHH-----HCCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCc
Confidence 123344556777766544444 334444433 33444 444567776544 44445565543
No 283
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=36.60 E-value=76 Score=25.03 Aligned_cols=88 Identities=17% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHH
Q 013497 106 SVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTY--DPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEI--AALLKV 181 (442)
Q Consensus 106 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty--~~li~~ 181 (442)
+.+...+..|+.+-+..++ +.|..|+.... .+.+...+..|+.+-+ +.+.+.|..++.... .+-+..
T Consensus 44 t~L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~ 114 (165)
T 3twr_A 44 TPLHFAAGYNRVSVVEYLL-----QHGADVHAKDKGGLVPLHNACSYGHYEVA----ELLVKHGAVVNVADLWKFTPLHE 114 (165)
T ss_dssp CHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CHHHHHHHcChHHHHHHHH-----hcCCCCCccCCCCCCHHHHHHHcCcHHHH----HHHHhCCCCCCCcCCCCCCHHHH
Confidence 4455556777765444443 34555544332 2344555577776644 444455655542211 123334
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.+..|..+-+ +.+.+.|..++
T Consensus 115 A~~~~~~~~v----~~Ll~~ga~~~ 135 (165)
T 3twr_A 115 AAAKGKYEIC----KLLLQHGADPT 135 (165)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHHcCCHHHH----HHHHHcCCCCc
Confidence 4556665533 33334454443
No 284
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=35.76 E-value=42 Score=27.76 Aligned_cols=70 Identities=13% Similarity=-0.045 Sum_probs=37.7
Q ss_pred hCCCCCCHHHHHHH--HHHHHhcCCCCCCchhhHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 013497 51 SQNLRLSLHHFNAL--LYLCSDSATDPSSKDSALRHGFRVFDQMLSN-NVIPNE-------ASVTSVARLAASKNDGDYA 120 (442)
Q Consensus 51 ~~g~~p~~~ty~~l--l~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~-g~~p~~-------~ty~~li~~~~~~g~~~~A 120 (442)
..|+.|....|+.+ +......+ .++.|.-+.+.+... +..|++ .++..+-+++...+++..|
T Consensus 11 ~~~~~~~~~~~~l~dqik~L~d~~--------LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA 82 (167)
T 3ffl_A 11 SSGLVPRGSHMNVIDHVRDMAAAG--------LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNA 82 (167)
T ss_dssp ----------CCHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHH
Confidence 34555555554444 33333344 577777666664432 122331 3556677889999999999
Q ss_pred HHHHHHhH
Q 013497 121 FVLIKRMN 128 (442)
Q Consensus 121 ~~~~~~m~ 128 (442)
...|++..
T Consensus 83 ~~~y~qAL 90 (167)
T 3ffl_A 83 VSKYTMAL 90 (167)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999853
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=35.30 E-value=73 Score=26.75 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 86 FRVFDQMLSNNVIPNEA--SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
.++++.+.+.|..++.. .-.+.+...++.|+.+-+..+++.-. ......+....+ .+...+..|+.+-+ +.+
T Consensus 22 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~~~t-~L~~A~~~~~~~~v----~~L 95 (240)
T 3eu9_A 22 YERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGDLNST-PLHWATRQGHLSMV----VQL 95 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCBTTTTBC-HHHHHHHHTCHHHH----HHH
T ss_pred hHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC-cchhhcCCcCCC-hhHHHHHcCCHHHH----HHH
Confidence 56666667777665432 12245666788888876665554332 111111111233 45555677776544 444
Q ss_pred HHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 164 GLMGLSLEQQ---EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 164 ~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.+.|..|+.. .. +.+...+..|..+-+ +.+.+.+..++
T Consensus 96 l~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~----~~Ll~~~~~~~ 136 (240)
T 3eu9_A 96 MKYGADPSLIDGEGC-SCIHLAAQFGHTSIV----AYLIAKGQDVD 136 (240)
T ss_dssp HHTTCCTTCCCTTSC-CHHHHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHcCCCCcccCCCCC-CHHHHHHHcCHHHHH----HHHHhcCCCcc
Confidence 5556555422 22 334444566776544 44444555443
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=34.62 E-value=24 Score=30.16 Aligned_cols=147 Identities=15% Similarity=0.069 Sum_probs=70.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCC-CCCC---H
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNN-VIPN---E 101 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g-~~p~---~ 101 (442)
.|...++.|+.+-+.. +.+.|..++ ....+.|..++..+. .++++.+.+.| ..++ .
T Consensus 47 ~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~~~~Ll~~~~~~~~~~~~ 109 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKY----LIKAGALVDPKDAEGSTCLHLAAKKGH-------------YEVVQYLLSNGQMDVNCQDD 109 (237)
T ss_dssp HHHHHHHTTCHHHHHH----HHTTTCCCCCCCTTSCCHHHHHHHTTC-------------HHHHHHHHTTTCCCTTCCCT
T ss_pred HHHHHHHhCCHHHHHH----HHhCCCCCCCCCCCCCcHHHHHHHcCC-------------HHHHHHHHhCCCCCcccCCC
Confidence 3455566777765444 445554332 233444444555543 45566666665 3322 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHH
Q 013497 102 ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAA 177 (442)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~ 177 (442)
.-.+ .+...+..|+.+-+..++ +.|..++... -.+.+...+..|..+ +.+.+.+.|..++... -.+
T Consensus 110 ~g~t-~L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t 179 (237)
T 3b7b_A 110 GGWT-PMIWATEYKHVDLVKLLL-----SKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDLHAVNIHGDS 179 (237)
T ss_dssp TSCC-HHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCTTCCCTTCCC
T ss_pred CCCC-HHHHHHHcCCHHHHHHHH-----HCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCC
Confidence 2223 344455667765444443 3444444321 223444555667765 4445555565554321 123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 178 LLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
-+...++.|..+-+ +.+.+.|..++
T Consensus 180 ~L~~A~~~~~~~~v----~~Ll~~gad~~ 204 (237)
T 3b7b_A 180 PLHIAARENRYDCV----VLFLSRDSDVT 204 (237)
T ss_dssp HHHHHHHTTCHHHH----HHHHTTTCCTT
T ss_pred HHHHHHHhCCHhHH----HHHHHcCCCCC
Confidence 34444566766544 33444555443
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.57 E-value=3.2e+02 Score=26.22 Aligned_cols=151 Identities=12% Similarity=0.050 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 013497 37 KDLTTAISLYESAHS-----QNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS-NNVIPNEASVTSVARL 110 (442)
Q Consensus 37 g~~~~A~~lf~~m~~-----~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~ 110 (442)
|++++|++.+-.+.+ ....-+......++.+|...+ .++...+.+.-+.. +|..+... +.+|+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~--------~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~ 99 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRN--------KWDDLNEQLTLLSKKHGQLKLSI--QYMIQK 99 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHS--------CHHHHHHHHHHHHTTTTTSHHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhhhHHHH--HHHHHH
Confidence 678888887766552 234556778888899998888 78887777766554 45444333 344443
Q ss_pred HH----hcCCHHH--HHHHHHHhHhhCCCCCC--------cccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---
Q 013497 111 AA----SKNDGDY--AFVLIKRMNNEFNVVPR--------LRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLE--- 171 (442)
Q Consensus 111 ~~----~~g~~~~--A~~~~~~m~~~~g~~p~--------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~--- 171 (442)
+. .....+. -..+.+... .+..+ .+....|...|-..|++.+|..++.++... |....
T Consensus 100 ~~~~l~~~~~~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 100 VMEYLKSSKSLDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 32 3333332 222222221 11211 123357888899999999999999998632 33222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 172 QQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 172 ~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...|..-++.|...+++.+|..++.+...
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24677778889999999999999998753
No 288
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=34.57 E-value=71 Score=28.66 Aligned_cols=54 Identities=9% Similarity=0.012 Sum_probs=29.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013497 146 CFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRS 200 (442)
Q Consensus 146 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~ 200 (442)
...+.|.+++|++-...-++.. +-|...=..|+.-+|-.|++++|..=++-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666666665555544432 22444445566666666666666665555544
No 289
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=33.85 E-value=49 Score=27.07 Aligned_cols=19 Identities=16% Similarity=-0.074 Sum_probs=9.5
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 013497 30 LQSCTKSKDLTTAISLYES 48 (442)
Q Consensus 30 i~~~~k~g~~~~A~~lf~~ 48 (442)
|...+..|+.+....+++.
T Consensus 39 L~~A~~~g~~~~v~~Ll~~ 57 (192)
T 2rfm_A 39 LMVACMLGMENAIDKLVEN 57 (192)
T ss_dssp HHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3344455666555555443
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=33.48 E-value=2.2e+02 Score=24.74 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCH----HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCC
Q 013497 27 LINLQSCTKSKDLTTAISLYESAHS--QNLRLSL----HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPN 100 (442)
Q Consensus 27 ~~li~~~~k~g~~~~A~~lf~~m~~--~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~ 100 (442)
---|+.+.-..++++|+++.++.++ .++++.. ..-...|..-.... .-.-+..+.+++.. .++
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR--------~~~L~~~L~~~l~~---~~~ 90 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQR--------REAISSKLSQSILS---SNE 90 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHH--------HHHHHHHHHHHHHT---CSS
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHH--------HHHHHHHHHHHHHh---cCC
Confidence 3457888999999999999998763 2333211 11122222111111 23335555555532 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 101 EASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
...-...+..+.+.|+.+.|.++|=+..
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 6666777788888899999888887665
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=33.01 E-value=1.3e+02 Score=26.60 Aligned_cols=142 Identities=8% Similarity=0.013 Sum_probs=70.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---HH
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLH-HFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SV 104 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---ty 104 (442)
.|...++.|+.+-+..+++ .|..++.. -++.|..++..+. .++.+.+.+.|..++.. -+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~ga~~~~~d~~g~ 96 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLED-------------TKIVKILLFSGLDDSQFDDKGN 96 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSS-------------CHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCC-------------HHHHHHHHHCCCCCCCcCCCCC
Confidence 3455566777765555444 34333222 1233333444332 34555556667655432 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 013497 105 TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT---YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ-EIAALLK 180 (442)
Q Consensus 105 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~li~ 180 (442)
| .+...+..|+.+-+..+++. |..|+... +.+.+...+..|..+-+ +.+.+.|..+... .-.+.+.
T Consensus 97 t-~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~ 166 (285)
T 3kea_A 97 T-ALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIH 166 (285)
T ss_dssp C-HHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHH
T ss_pred c-HHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHH
Confidence 3 34445667777655555543 33344332 24556666677776544 4444444333111 2233444
Q ss_pred HHHhcCCHHHHHHHHHH
Q 013497 181 VSAETGRVEKVYQYLQK 197 (442)
Q Consensus 181 ~~~~~g~~~~a~~ll~~ 197 (442)
..+..|..+-+..+++.
T Consensus 167 ~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHc
Confidence 45577777655555543
No 292
>1v96_A Hypothetical protein PH0500; rossmann fold, tRNA synthetase, nucleotide binding protein, structural genomics; 1.75A {Pyrococcus horikoshii} SCOP: c.120.1.1 PDB: 1ye5_A 1y82_A
Probab=32.92 E-value=21 Score=28.44 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=29.4
Q ss_pred CCCccHHHHHHHHhcCcEEEecCc--ccc---chhhccccchhhhhhh
Q 013497 396 GSNDDWYWLYAAVKLRCLLVTNDE--MRD---HIFELLGSNFFLKWKE 438 (442)
Q Consensus 396 ~~~DD~~~l~aa~~~~~~~vsnD~--~rd---h~~~~~~~~~f~~W~~ 438 (442)
....|.++.-.|+..++.+||+|. |+. .....+++.-|.+|.+
T Consensus 94 ~~~~D~lIaA~A~~~~~~lvT~D~kdf~~i~~~~i~~i~~~efl~~~~ 141 (149)
T 1v96_A 94 LDMEDIITATTAIYTNSLLVTDDPKRYEPIRRFGLDTMPLDKFIKEVE 141 (149)
T ss_dssp CCHHHHHHHHHHHHHTCEEEESCHHHHGGGGGGTCCEEEHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHcCCEEEECCHHHHhhhhhCCeeecCHHHHHHHHH
Confidence 344789888889999999999993 442 1223445567777653
No 293
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.99 E-value=1.5e+02 Score=21.69 Aligned_cols=39 Identities=5% Similarity=-0.016 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVL 123 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~ 123 (442)
..++|.++++.+..+|. .+|.+++.++...|+..-|..+
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHHH
Confidence 56667777776655553 3566666666666665555443
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.45 E-value=1.2e+02 Score=25.90 Aligned_cols=45 Identities=13% Similarity=0.018 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 013497 84 HGFRVFDQMLSNNVIPN-EASVTSVARLAASKNDGDYAFVLIKRMN 128 (442)
Q Consensus 84 ~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~~~~~m~ 128 (442)
++.++|..|..+||--. ..-|......+-..|++.+|.++|..-.
T Consensus 97 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 97 ESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444322 2334444444444445555544444444
No 295
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=31.42 E-value=60 Score=25.92 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.-...+...++.|+.+.+..+++ .|..+ |..-++.|..++..+. .++.+.+.+.|..++.
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~ 75 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGH-------------LEIVEVLLKNGADVNA 75 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTC
T ss_pred cccchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCc
Confidence 33445555667788877655554 44433 2333445555665553 4555666666765543
Q ss_pred HH--HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HH
Q 013497 102 AS--VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ--EI 175 (442)
Q Consensus 102 ~t--y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~--ty 175 (442)
.. -.+.+...+..|+.+-+..++ +.|..++... -.+.+...+..|+.+-+ +.+.+.|..++.. .-
T Consensus 76 ~~~~g~t~L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g 146 (169)
T 2y1l_E 76 VDHAGMTPLRLAALFGHLEIVEVLL-----KNGADVNANDMEGHTPLHLAAMFGHLEIV----EVLLKNGADVNAQDKFG 146 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTS
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCC
Confidence 21 123444556677766544444 3344443322 22344555567776544 4444556544321 11
Q ss_pred HHHHHHHHhcCCHHH
Q 013497 176 AALLKVSAETGRVEK 190 (442)
Q Consensus 176 ~~li~~~~~~g~~~~ 190 (442)
.+-+...++.|..+-
T Consensus 147 ~t~l~~A~~~~~~~~ 161 (169)
T 2y1l_E 147 KTAFDISIDNGNEDL 161 (169)
T ss_dssp CCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCHHH
Confidence 123334445666543
No 296
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.42 E-value=1.2e+02 Score=27.71 Aligned_cols=99 Identities=12% Similarity=0.015 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhHhhCC
Q 013497 55 RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS--VTSVARLAASKNDGDYAFVLIKRMNNEFN 132 (442)
Q Consensus 55 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~~g 132 (442)
..|..-++.|..++..+. .++++.+.+.|..++... -.+.+...+..|+.+-+..+++. |
T Consensus 15 ~~d~~g~t~L~~Aa~~g~-------------~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----g 76 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQ-------------TDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV-----G 76 (364)
T ss_dssp -CCHHHHHHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH-----C
T ss_pred ccCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC-----C
Confidence 457777888877777765 556666667777665422 12345556777887766655544 3
Q ss_pred CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 133 VVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 133 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
..++...-.+.+...+..|+.+-+..+++.-...|..|+
T Consensus 77 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 77 EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp CCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred CCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 344443333455566688999888888877655555443
No 297
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.75 E-value=82 Score=26.00 Aligned_cols=135 Identities=7% Similarity=-0.076 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH--
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA-- 102 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~-- 102 (442)
+.|...+..|+.+.-.++.+.+.+.|..++. .-.+.|..++..+.. .+....++.+.+.+.|..+|..
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~-------~~~~~~~iv~~Ll~~Gadin~~d~ 112 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN-------DITGTTELCKIFLEKGADITALYK 112 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT-------CHHHHHHHHHHHHHTTCCSSSCBG
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc-------chhhHHHHHHHHHHCCCCCCccCC
Confidence 4556667778887777788888888876654 334455545544321 3445567888888889877653
Q ss_pred -HHHHHHHHHHhcCCH-HHHHHHHHHhHhh-CCCCCCcccH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 103 -SVTSVARLAASKNDG-DYAFVLIKRMNNE-FNVVPRLRTY--DPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 103 -ty~~li~~~~~~g~~-~~A~~~~~~m~~~-~g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
-.++.+...+..+.. ..-..+++.+. . .|..++.... .+.+...++.|..+-..-+.+.+...+++.
T Consensus 113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll-~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 113 PYKIVVFKNIFNYFVDENEMIPLYKLIF-SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGTBCTTGGGGGCCSCHHHHHHHHHHHH-TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred CcCchHHHHHHHcCCChhhHHHHHHHHH-HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 222444444444443 34456777777 6 7877766442 134455567777766655555555555543
No 298
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=30.69 E-value=96 Score=23.55 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCC
Q 013497 57 SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SVTSVARLAASKNDGDYAFVLIKRMNNEFNV 133 (442)
Q Consensus 57 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 133 (442)
.....+.|..++..+. .++++.+.+.|..++.. -+|. +...+..|+.+-+..++ +.|.
T Consensus 11 ~~~~~t~l~~A~~~g~-------------~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll-----~~g~ 71 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQ-------------DDEVRILMANGADVNAKDEYGLTP-LYLATAHGHLEIVEVLL-----KNGA 71 (136)
T ss_dssp -CHHHHHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHH-----HTTC
T ss_pred cccccHHHHHHHHhCC-------------HHHHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHH-----HcCC
Confidence 3344555555666664 45555666666654432 2333 44445667765544444 3344
Q ss_pred CCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 013497 134 VPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVSAETGRVEKVY 192 (442)
Q Consensus 134 ~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~a~ 192 (442)
.++.. -+++| ...+..|+.+-+ +.+.+.|..++... -.+-+...+..|..+-+.
T Consensus 72 ~~~~~d~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~ 130 (136)
T 2jab_A 72 DVNAVDAIGFTPL-HLAAFIGHLEIA----EVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130 (136)
T ss_dssp CTTCCCTTCCCHH-HHHHHHTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCcCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHH
Confidence 44432 33444 444566776544 44445555443211 122334445566654443
No 299
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=30.46 E-value=53 Score=28.65 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH---H
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE---A 102 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~---~ 102 (442)
.|...++.|+.+.+..++ +.|..++ ..-.+.|..++..+. .++.+.+.+.|..++. .
T Consensus 6 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~g~~~~~~~~~ 68 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLI----SQGWAVNIITADHVSPLHEACLGGH-------------LSCVKILLKHGAQVNGVTAD 68 (261)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCSSCCCTTCCCHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCC-------------HHHHHHHHHCCCCCCCCCCC
Confidence 345566778776555444 3454333 233445555665553 4555556666766542 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL--RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAAL 178 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~l 178 (442)
-.| .+...+..|+.+-+..+++. |..++. .-. +.+...+..|+.+- .+.+.+.|..++... -.+.
T Consensus 69 g~t-~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~ 137 (261)
T 2xai_A 69 WHT-PLFNACVSGSWDCVNLLLQH-----GASVQPESDLA-SPIHEAARRGHVEC----VNSLIAYGGNIDHKISHLGTP 137 (261)
T ss_dssp SCC-HHHHHHHHTCHHHHHHHHHT-----TCCSSCSCTTC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTBCH
T ss_pred CCC-HHHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCC-CHHHHHHHcCcHHH----HHHHHHcCCCCCcCCCCCCCH
Confidence 223 34444566777655555433 333332 223 34555567777654 444455565543221 1133
Q ss_pred HHHHHhcCCHHHHHHHH
Q 013497 179 LKVSAETGRVEKVYQYL 195 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll 195 (442)
+...+..|..+-+..++
T Consensus 138 L~~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 138 LYLACENQQRACVKKLL 154 (261)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 34445667665444333
No 300
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.44 E-value=1.6e+02 Score=24.17 Aligned_cols=106 Identities=12% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-------ccHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 013497 95 NNVIPNEA--SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 95 ~g~~p~~~--ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-------~ty~~li~~~~~~g~~~~A~~l~~~M~~ 165 (442)
.|..|.-. ++-.-++.+...|.++.|.-+.+-..+-.+-.|+. .++..+-+++...|++..|...|+....
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 44455333 33344667788889998888877655222234443 2567777889999999999999998522
Q ss_pred C-CC----------------------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 166 M-GL----------------------SLEQ--QEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 166 ~-g~----------------------~p~~--~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
. .. .+.+ .=|. +-.+|.+.++.++|..+++.+...
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 00 0111 2233 556788899999999998765444
No 301
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=30.29 E-value=2.2e+02 Score=23.00 Aligned_cols=50 Identities=8% Similarity=-0.167 Sum_probs=24.4
Q ss_pred HHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 120 AFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 120 A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
+.++|..|. ..||--.. .-|..--..+-..|++.+|.+||+.=.+.+-.|
T Consensus 84 p~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLY-NHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHH-TTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHH-HCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555 44433222 234444444445555555555555555555554
No 302
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.66 E-value=2.6e+02 Score=23.74 Aligned_cols=54 Identities=7% Similarity=-0.141 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 153 AEKAYEVEEHMGLMGLSLE-QQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 153 ~~~A~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
..++.++|..|..+|+--. ..-|...-..+-..|++.+|.++|+.=++.+-.|-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4455666666655544332 33445555555556666666666655555544443
No 303
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.23 E-value=1.3e+02 Score=28.69 Aligned_cols=65 Identities=6% Similarity=-0.073 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRST 201 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~ 201 (442)
..+...+-..|.+.|+.++|.+.+.++... +..--...+-.+|+.+...+++..+...+.+....
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457889999999999999999999999865 33333567888899999999999999999887653
No 304
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.89 E-value=1.6e+02 Score=27.24 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCC
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIP 99 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p 99 (442)
..+.+|.-|...||.++|...++++......| ...+..+..+.-+. ....+.+..++..+.+.|+-+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~-------~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERS-------AIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTC-------HHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCC-------HHHHHHHHHHHHHHHHCCCCC
Confidence 57789999999999999999998885322211 11222222222221 124566888888888776654
No 305
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=28.46 E-value=76 Score=24.18 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.-.+.+.-.++.|+.+....+++ .|..+ |..-++.|..++..+. .++.+.+.+.|..++.
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~ 75 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGH-------------LEIVEVLLKNGADVNA 75 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTC-------------HHHHHHHHHTTCCTTC
T ss_pred cccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCc
Confidence 55566667778888877655554 44433 3334455655666554 4556666677766543
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHH
Q 013497 102 ---ASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEV 159 (442)
Q Consensus 102 ---~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l 159 (442)
.-++. +...+..|+.+-+..++ +.|..++... -.+.+...++.|+.+-+..+
T Consensus 76 ~d~~g~t~-L~~A~~~~~~~~v~~Ll-----~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~L 132 (136)
T 2jab_A 76 VDAIGFTP-LHLAAFIGHLEIAEVLL-----KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132 (136)
T ss_dssp CCTTCCCH-HHHHHHHTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCH-HHHHHHcCCHHHHHHHH-----HcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHH
Confidence 22333 44446677766554444 3444444322 22345555677776544433
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.80 E-value=1.1e+02 Score=25.68 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=75.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS-- 103 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t-- 103 (442)
.|...++.|+.+-+ +.+.+.|..++ ...++.|..++..+. .++++.+.+.|..++...
T Consensus 43 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~ 105 (231)
T 3aji_A 43 ALHWACSAGHTEIV----EFLLQLGVPVNDKDDAGWSPLHIAASAGX-------------DEIVKALLVKGAHVNAVNQN 105 (231)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCCHHHHHHHcCH-------------HHHHHHHHHcCCCCCCCCCC
Confidence 44455667776544 44445565443 334455555665554 456666777776654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALL 179 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li 179 (442)
-.+.+...+..|+.+-+..++ +.|..|+... -.+.+...+..|..+-+. .+.+.|..++... -.+-+
T Consensus 106 g~t~L~~A~~~~~~~~~~~Ll-----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~L 176 (231)
T 3aji_A 106 GCTPLHYAASKNRHEIAVMLL-----EGGANPDAKDHYDATAMHRAAAKGNLKMVH----ILLFYKASTNIQDTEGNTPL 176 (231)
T ss_dssp SCCHHHHHHHTTCHHHHHHHH-----HTTCCTTCCCTTSCCHHHHHHHHTCHHHHH----HHHHTTCCSCCCCTTSCCHH
T ss_pred CCCHHHHHHHcCCHHHHHHHH-----HcCCCCCCcCCCCCcHHHHHHHcCCHHHHH----HHHhcCCCccccCCCCCCHH
Confidence 123445556778877555444 3444554432 223455556778776444 4445565544221 12334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 180 KVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 180 ~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
...+..|..+-+ +.+.+.|..++
T Consensus 177 ~~A~~~~~~~~v----~~Ll~~ga~~~ 199 (231)
T 3aji_A 177 HLACDEERVEEA----KFLVTQGASIY 199 (231)
T ss_dssp HHHHHTTCHHHH----HHHHHTTCCSC
T ss_pred HHHHHCCCHHHH----HHHHHCCCCCC
Confidence 444566765443 44445555544
No 307
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=27.49 E-value=1.9e+02 Score=23.71 Aligned_cols=31 Identities=10% Similarity=-0.208 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
|..--..+-..|++.+|.+||..=.+.+-.|
T Consensus 99 Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 99 YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3333333444455555555555444444444
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.16 E-value=1.2e+02 Score=25.38 Aligned_cols=86 Identities=9% Similarity=-0.029 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVS 182 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~ 182 (442)
.+...++.|+.+.+..+++.+. ..|..++... -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQ-QGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-hcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 3455577788888777777666 5565555432 123445555677764 3444445565543221 11233444
Q ss_pred HhcCCHHHHHHHHHH
Q 013497 183 AETGRVEKVYQYLQK 197 (442)
Q Consensus 183 ~~~g~~~~a~~ll~~ 197 (442)
+..|..+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 566776655555443
No 309
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=27.12 E-value=1.9e+02 Score=21.41 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHH-HHhCCCCCCHHHHHHH
Q 013497 41 TAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQ-MLSNNVIPNEASVTSV 107 (442)
Q Consensus 41 ~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~-M~~~g~~p~~~ty~~l 107 (442)
.|.++-++...-|+.|+..+..-++.+|...++++ .+-+.+.+.. ....|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda------~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNE------EGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCH------HHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCH------HHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 46677888888899999999999999998887432 1112222222 2346778877766654
No 310
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=27.05 E-value=1.5e+02 Score=23.86 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=49.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 013497 33 CTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE---ASVTS 106 (442)
Q Consensus 33 ~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~---~ty~~ 106 (442)
.++.|+.+.+..++ +.|..|| ..-++.|..++.... .++...+.+.|..++. .-+|.
T Consensus 11 Aa~~G~~~~v~~Ll----~~Gadvn~~d~~g~t~l~~a~~~~~-------------~~~~~~ll~~gad~~~~d~~g~Tp 73 (169)
T 4gpm_A 11 AAENGNKDRVKDLI----ENGADVNASDSDGRTPLHHAAENGH-------------KEVVKLLISKGADVNAKDSDGRTP 73 (169)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHcCC-------------HHHHHHHHhcccchhhhccCCCCH
Confidence 45667776665554 3454333 223344444444443 3344444555654432 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 013497 107 VARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT---YDPALFCFCENLEAEKAYEVEEHMGLMGLSL 170 (442)
Q Consensus 107 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p 170 (442)
|. ..+..|+.+-+..+ . +.|..|+... +++|. ..+..|+.+-+ +.+.+.|..|
T Consensus 74 Lh-~A~~~g~~~~v~~L----l-~~gadvn~~d~~G~TpLh-~A~~~g~~~~v----~~Ll~~gad~ 129 (169)
T 4gpm_A 74 LH-HAAENGHKEVVKLL----I-SKGADVNAKDSDGRTPLH-HAAENGHKEVV----KLLISKGADV 129 (169)
T ss_dssp HH-HHHHTTCHHHHHHH----H-HTTCCTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTCCT
T ss_pred HH-HHHHcCCHHHHHHH----H-HCcCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHHcCCCc
Confidence 33 33555665543333 3 3444444432 33433 33455665433 3334445444
No 311
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=26.11 E-value=4.2e+02 Score=25.00 Aligned_cols=170 Identities=8% Similarity=-0.022 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC-C
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQ-NLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI-P 99 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~-g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~-p 99 (442)
....|...|++.|+.++..+++...+.- +.-| .......||..+.....+ ....++-..+.+++-....-. .
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~r~fl 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG---TGIEVQLCKDCIEWAKQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC---HHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999886521 1112 335567778877664311 122344444555544433111 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH
Q 013497 100 NEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR-----LRTYDPALFCFCENLEAEKAYEVEEHMGLM--GLSLEQ 172 (442)
Q Consensus 100 ~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--g~~p~~ 172 (442)
....=.-+...|...|++.+|.+++.++..... ..| +..|-.-+..|...++..++...+..-... .+.|++
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~-~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELK-KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT-TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 111223688999999999999999999873221 112 244677778888999999999988776433 333444
Q ss_pred HHHHHHHHH-----HH-hcCCHHHHHHHHHHHH
Q 013497 173 QEIAALLKV-----SA-ETGRVEKVYQYLQKLR 199 (442)
Q Consensus 173 ~ty~~li~~-----~~-~~g~~~~a~~ll~~m~ 199 (442)
..- +-|+. +. ..+++..|...|-+--
T Consensus 177 ~i~-a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQ-GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 432 33332 33 6889999998887653
No 312
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=25.87 E-value=2e+02 Score=26.96 Aligned_cols=80 Identities=4% Similarity=-0.019 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS 103 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t 103 (442)
.-..+|.-|...||+++|...++++.... ..| .+.+..+..++-+.. ...+.+-.++..+...|+-+....
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~-~~v~~~i~~aLer~~-------~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLP-EMLSKVIILSLDRSD-------EDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHH-HHHHHHHHHHHTSCH-------HHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHH-HHHHHHHHHHHCCCh-------HHHHHHHHHHHHHHHCCCCCHHHH
Confidence 67889999999999999999999986321 111 223333333443321 134557777777777666544444
Q ss_pred HHHHHHHHH
Q 013497 104 VTSVARLAA 112 (442)
Q Consensus 104 y~~li~~~~ 112 (442)
...+...+-
T Consensus 86 ~~Gf~~lle 94 (364)
T 3l6a_A 86 MQAFLNVLD 94 (364)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444333
No 313
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=25.71 E-value=1.1e+02 Score=26.82 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRL---SLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE 101 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~ 101 (442)
.-.+.+...+..|+++.+..+++. |..+ |...++.|..++..+. .++.+.+.+.|..++.
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~ga~~~~ 101 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLER----GADINYANVDGLTALHQACIDDN-------------VDMVKFLVENGANINQ 101 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH----CCCTTCBCTTCCBHHHHHHHTTC-------------HHHHHHHHHTTCCTTC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHc----CCCCcccCCCCCCHHHHHHHcCC-------------HHHHHHHHHCCCCCCC
Confidence 334556667778998887777653 4333 2333455555666554 4566666667766543
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 102 ---ASVTSVARLAASKNDGDYAFVLIK 125 (442)
Q Consensus 102 ---~ty~~li~~~~~~g~~~~A~~~~~ 125 (442)
.-+|. +...+..|+.+-+..+++
T Consensus 102 ~~~~g~tp-L~~A~~~g~~~~v~~Ll~ 127 (299)
T 1s70_B 102 PDNEGWIP-LHAAASCGYLDIAEYLIS 127 (299)
T ss_dssp CCTTSCCH-HHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCcH-HHHHHHcCCHHHHHHHHh
Confidence 23333 444566677765544443
No 314
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.29 E-value=3.8e+02 Score=24.27 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhccCCCChHH
Q 013497 140 YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGR--VEKVYQYLQKLRSTVRCVNEET 209 (442)
Q Consensus 140 y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~--~~~a~~ll~~m~~~~~~p~~~t 209 (442)
.+.+|.-|...|+.++|.+.++++...... ...++.++..++-+.+. .+.+.++|..+...++-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 567888888899999999988888532222 23445555555544332 4567788888877766555443
No 315
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.95 E-value=57 Score=27.60 Aligned_cols=148 Identities=10% Similarity=0.113 Sum_probs=72.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSL---HHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS-- 103 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t-- 103 (442)
.|...++.|+.+-+ +.+.+.|..++. ..++.|..++..+. .++++.+.+.|..++...
T Consensus 14 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~ 76 (237)
T 3b7b_A 14 PLHAAAEAGHVDIC----HMLVQAGANIDTCSEDQRTPLMEAAENNH-------------LEAVKYLIKAGALVDPKDAE 76 (237)
T ss_dssp HHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTC-------------HHHHHHHHTTTCCCCCCCTT
T ss_pred HHHHHHHcCcHHHH----HHHHHcCCCcCccCCCCCCHHHHHHHhCC-------------HHHHHHHHhCCCCCCCCCCC
Confidence 35556677887644 444455554432 23445555665553 456666667776554321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC---cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHH
Q 013497 104 VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR---LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAAL 178 (442)
Q Consensus 104 y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~l 178 (442)
-.+.+...+..|+.+-+..+++.-. ..++ ..-.++ +...+..|+.+ +++.+.+.|..++... -.+.
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~ 147 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSNGQ----MDVNCQDDGGWTP-MIWATEYKHVD----LVKLLLSKGSDINIRDNEENIC 147 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTTTC----CCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCC----CCcccCCCCCCCH-HHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCH
Confidence 1234455567777665555543321 2222 233344 44455677765 4444555665543221 1123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 179 LKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 179 i~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
+...+..|..+ +++.+.+.|..++
T Consensus 148 L~~A~~~~~~~----~~~~Ll~~g~~~~ 171 (237)
T 3b7b_A 148 LHWAAFSGCVD----IAEILLAAKCDLH 171 (237)
T ss_dssp HHHHHHHCCHH----HHHHHHTTTCCTT
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCC
Confidence 33344556654 3344444554443
No 316
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.67 E-value=2.6e+02 Score=24.46 Aligned_cols=153 Identities=13% Similarity=0.013 Sum_probs=76.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHH--
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEAS-- 103 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~t-- 103 (442)
.|...+..|+.+-+.-+ .+.|..++ ..-++.|..++..+. .++.+.+.+.|..++...
T Consensus 65 ~L~~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~g~-------------~~~v~~Ll~~ga~~~~~~~~ 127 (285)
T 3kea_A 65 PLHQAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYAVDSGN-------------MQTVKLFVKKNWRLMFYGKT 127 (285)
T ss_dssp HHHHHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHTTC-------------HHHHHHHHHHCGGGGGCSSS
T ss_pred HHHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHHHHcCC-------------HHHHHHHHhcCCCCCccCCC
Confidence 45556667776544444 44454433 333455555665553 344445555565554322
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCC-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 013497 104 -VTSVARLAASKNDGDYAFVLIKRMNNEFNVVP-RLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKV 181 (442)
Q Consensus 104 -y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~ 181 (442)
+.+.+...+..|+.+-+..+++. |..+ +...-.+.+...+..|..+-+..+++.-..-... |..-++..+..
T Consensus 128 g~~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~ 201 (285)
T 3kea_A 128 GWKTSFYHAVMLNDVSIVSYFLSE-----IPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKL 201 (285)
T ss_dssp GGGSHHHHHHHTTCHHHHHHHHTT-----SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhC-----CCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHH
Confidence 24556666777776655444433 3222 2213445566667888887766666553332211 11111222333
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCChH
Q 013497 182 SAETGRVEKVYQYLQKLRSTVRCVNEE 208 (442)
Q Consensus 182 ~~~~g~~~~a~~ll~~m~~~~~~p~~~ 208 (442)
.+..|..+ +.+.+.+.|..|+..
T Consensus 202 A~~~~~~~----~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 202 AIDNKDIE----MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHTCHH----HHHHHTTSCBCSTTT
T ss_pred HHHcCCHH----HHHHHHHcCCCCCCC
Confidence 34555543 444555666666554
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.66 E-value=89 Score=26.89 Aligned_cols=117 Identities=9% Similarity=-0.082 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHH--hcCCCCCCchhhHHHHHHHHHHHHhCC---
Q 013497 29 NLQSCTKSKDLTTAISLYESAHSQNLRLSLHH-------FNALLYLCS--DSATDPSSKDSALRHGFRVFDQMLSNN--- 96 (442)
Q Consensus 29 li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~t-------y~~ll~~~~--~~~~~~~~~~~~~~~a~~l~~~M~~~g--- 96 (442)
.|...++.|+.+....+++.+.+.|..++... .+.|..++. +.+ ..+-+..+++.-...+
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g--------~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAG--------RNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTT--------BCTHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcC--------CHHHHHHHHHhcccccchH
Confidence 45566788999998889988887776666433 345544442 233 4555555555432211
Q ss_pred ------CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc----------------HHHHHHHHHHcCCH
Q 013497 97 ------VI-PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT----------------YDPALFCFCENLEA 153 (442)
Q Consensus 97 ------~~-p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t----------------y~~li~~~~~~g~~ 153 (442)
+. .|..-+ +.+...+..|+.+-+..+++ .|..++... -.+.|...+..|..
T Consensus 80 ~~~~~~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 153 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQ-TALHIAIERRCKHYVELLVE-----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153 (260)
T ss_dssp HHHTCCBCCSSEESB-CHHHHHHHTTCHHHHHHHHH-----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred hhhcccccccccCCC-CHHHHHHHcCCHHHHHHHHh-----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence 10 011122 33445567788765554443 455555543 33445555677776
Q ss_pred HHHHHH
Q 013497 154 EKAYEV 159 (442)
Q Consensus 154 ~~A~~l 159 (442)
+-+..+
T Consensus 154 ~~v~~L 159 (260)
T 3jxi_A 154 HIVHYL 159 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 318
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.42 E-value=57 Score=28.97 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH--
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNLRLS---LHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA-- 102 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~~p~---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~-- 102 (442)
+.|...+..|+.+-+..++ +.|..++ ..-++.|..++..+. .++.+.+.+.|..++..
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~-------------~~~v~~Ll~~ga~~~~~~~ 123 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLI----SQGWAVNIITADHVSPLHEACLGGH-------------LSCVKILLKHGAQVNGVTA 123 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHH----HTTCCSCEECTTCCCHHHHHHHTTC-------------HHHHHHHHHTTCCSSCCCT
T ss_pred CHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHCCc-------------HHHHHHHHHCCCCCCCCCC
Confidence 3455667778876554444 4454443 233445555665553 45555666667665432
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCccc-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHH
Q 013497 103 -SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRT-YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ---EIAA 177 (442)
Q Consensus 103 -ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~---ty~~ 177 (442)
-.+. +...+..|+.+-+..+++ .|..++... -.+.+...+..|..+-+ +.+.+.|..++.. -. +
T Consensus 124 ~g~t~-L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~d~~g~-t 192 (285)
T 3d9h_A 124 DWHTP-LFNACVSGSWDCVNLLLQ-----HGASVQPESDLASPIHEAARRGHVECV----NSLIAYGGNIDHKISHLG-T 192 (285)
T ss_dssp TCCCH-HHHHHHHTCHHHHHHHHH-----TTCCSSCSCTTSCHHHHHHHHTCHHHH----HHHHHTTCCTTCCBTTTB-C
T ss_pred CCCCH-HHHHHHcCHHHHHHHHHH-----CCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCC-C
Confidence 2233 344456677765555443 333332211 23345555677776544 4444555544321 12 2
Q ss_pred HHHHHHhcCCHHHHHH
Q 013497 178 LLKVSAETGRVEKVYQ 193 (442)
Q Consensus 178 li~~~~~~g~~~~a~~ 193 (442)
.+...+..|..+-+..
T Consensus 193 ~L~~A~~~~~~~~v~~ 208 (285)
T 3d9h_A 193 PLYLACENQQRACVKK 208 (285)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCcHHHHHH
Confidence 3334456666644433
No 319
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=24.33 E-value=36 Score=29.59 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Q 013497 86 FRVFDQMLSNNVIPNEASV--TSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAEKAYEVEEHM 163 (442)
Q Consensus 86 ~~l~~~M~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M 163 (442)
.++.+.+.+.|..++.... .+.+...+..|+.+-+..+++.-. ..--..+..-+++|. ..+..|..+-+. .+
T Consensus 70 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~-~~~~~~~~~g~t~L~-~A~~~~~~~~v~----~L 143 (253)
T 1yyh_A 70 SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA-TDLDARMHDGTTPLI-LAARLAVEGMLE----DL 143 (253)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT-SCTTCCCTTCCCHHH-HHHHHTCSSHHH----HH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CCccccCCCCCcHHH-HHHHcChHHHHH----HH
Confidence 4455566666766543211 133444456677665554443221 000112233344444 444666655443 34
Q ss_pred HHCCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 013497 164 GLMGLSLEQQE--IAALLKVSAETGRVEKV 191 (442)
Q Consensus 164 ~~~g~~p~~~t--y~~li~~~~~~g~~~~a 191 (442)
.+.|..++... -.+.+...+..|..+-+
T Consensus 144 l~~g~~~~~~d~~g~t~L~~A~~~~~~~~v 173 (253)
T 1yyh_A 144 INSHADVNAVDDLGKSALHWAAAVNNVDAA 173 (253)
T ss_dssp HHTTCCTTCBCTTSCBHHHHHHHHTCHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 44555443221 11233334455665433
No 320
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=24.13 E-value=1.7e+02 Score=23.47 Aligned_cols=115 Identities=20% Similarity=0.118 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc--
Q 013497 63 ALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEA---SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-- 137 (442)
Q Consensus 63 ~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-- 137 (442)
.|+.++..+. .++.+.+.+.|..||.. -+|. +...+..+..+.+..+++ .|..|+.
T Consensus 7 ~L~~Aa~~G~-------------~~~v~~Ll~~Gadvn~~d~~g~t~-l~~a~~~~~~~~~~~ll~-----~gad~~~~d 67 (169)
T 4gpm_A 7 RLIEAAENGN-------------KDRVKDLIENGADVNASDSDGRTP-LHHAAENGHKEVVKLLIS-----KGADVNAKD 67 (169)
T ss_dssp HHHHHHHTTC-------------HHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHH-----TTCCTTCCC
T ss_pred HHHHHHHcCC-------------HHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHh-----cccchhhhc
Confidence 4667776664 44455556677766532 2333 444567777766655543 3444443
Q ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 138 -RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQ---EIAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 138 -~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~---ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
.-+++|.. .+..|..+- .+.+.+.|..++.. -++.|.- .+..|..+-+. .+.+.|..|+
T Consensus 68 ~~g~TpLh~-A~~~g~~~~----v~~Ll~~gadvn~~d~~G~TpLh~-A~~~g~~~~v~----~Ll~~gad~~ 130 (169)
T 4gpm_A 68 SDGRTPLHH-AAENGHKEV----VKLLISKGADVNAKDSDGRTPLHH-AAENGHKEVVK----LLISKGADVN 130 (169)
T ss_dssp TTSCCHHHH-HHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHH----HHHHTTCCTT
T ss_pred cCCCCHHHH-HHHcCCHHH----HHHHHHCcCCCCCCCCCCCCHHHH-HHHcCCHHHHH----HHHHcCCCcc
Confidence 33445544 457787654 44455667665432 2234443 34667765443 3344555444
No 321
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=23.11 E-value=1.3e+02 Score=23.74 Aligned_cols=124 Identities=17% Similarity=-0.003 Sum_probs=62.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHhhC
Q 013497 55 RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNE---ASVTSVARLAASKNDGDYAFVLIKRMNNEF 131 (442)
Q Consensus 55 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~~~~~m~~~~ 131 (442)
.|.....+.+..++..+. .++++.+.+.|..++. .-+ +.+...+..|+.+-+..+++ .
T Consensus 9 ~~~~~~~~~l~~A~~~g~-------------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~-----~ 69 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGR-------------DDEVRILMANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLK-----N 69 (169)
T ss_dssp ----CHHHHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH-----T
T ss_pred cCCCcccchHHHHHHcCC-------------HHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHH-----c
Confidence 344455666666777665 5556666667766542 223 34555577788765555443 3
Q ss_pred CCCCCccc--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccCCC
Q 013497 132 NVVPRLRT--YDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQE--IAALLKVSAETGRVEKVYQYLQKLRSTVRCV 205 (442)
Q Consensus 132 g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p 205 (442)
|..++... -.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..|..+-+ +.+.+.|..+
T Consensus 70 g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~ 139 (169)
T 2y1l_E 70 GADVNAVDHAGMTPLRLAALFGHLEIV----EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV----EVLLKNGADV 139 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCT
T ss_pred CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCC
Confidence 44444322 12345555677876544 44445565443221 12334444566776544 3344455444
No 322
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.98 E-value=2.2e+02 Score=22.45 Aligned_cols=21 Identities=10% Similarity=-0.209 Sum_probs=10.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 013497 145 FCFCENLEAEKAYEVEEHMGL 165 (442)
Q Consensus 145 ~~~~~~g~~~~A~~l~~~M~~ 165 (442)
-|+.+.|++++|.+..+.+.+
T Consensus 86 vg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 86 IGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344455555555555554443
No 323
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=22.93 E-value=53 Score=29.21 Aligned_cols=155 Identities=12% Similarity=0.025 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---------CC-CCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHh
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHS---------QN-LRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLS 94 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~---------~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~ 94 (442)
...+.+...+..|+..+..++...... .+ ...|..-++.|..++..+. .++++.+.+
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~-------------~~~v~~Ll~ 80 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGH-------------QLSLRNLIS 80 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTC-------------HHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCC-------------HHHHHHHHH
Confidence 556778888888988877775544321 11 1223333455555666554 456666667
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcc---cHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 013497 95 NNVIPNEAS--VTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLR---TYDPALFCFCENLEAEKAYEVEEHMGLMGLS 169 (442)
Q Consensus 95 ~g~~p~~~t--y~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~ 169 (442)
.|..++... -.+.+...+..|+.+-+..+++ .|..++.. -.++| ...+..|..+-+ +.+.+.|..
T Consensus 81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----~ga~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~ 150 (285)
T 3d9h_A 81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLK-----HGAQVNGVTADWHTPL-FNACVSGSWDCV----NLLLQHGAS 150 (285)
T ss_dssp TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-----TTCCSSCCCTTCCCHH-HHHHHHTCHHHH----HHHHHTTCC
T ss_pred CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-----CCCCCCCCCCCCCCHH-HHHHHcCHHHHH----HHHHHCCCC
Confidence 776654321 1234445567788765555543 34444433 34444 445567776544 444455544
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhccCCCC
Q 013497 170 LEQQE-IAALLKVSAETGRVEKVYQYLQKLRSTVRCVN 206 (442)
Q Consensus 170 p~~~t-y~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~ 206 (442)
++... -.+.+...+..|..+-+. .+.+.|..++
T Consensus 151 ~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~ 184 (285)
T 3d9h_A 151 VQPESDLASPIHEAARRGHVECVN----SLIAYGGNID 184 (285)
T ss_dssp SSCSCTTSCHHHHHHHHTCHHHHH----HHHHTTCCTT
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCC
Confidence 43211 123344445667765443 4444554443
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.86 E-value=1.2e+02 Score=27.62 Aligned_cols=72 Identities=8% Similarity=-0.048 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHH
Q 013497 103 SVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLE--AEKAYEVEEHMGLMGLSLEQQEIA 176 (442)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~--~~~A~~l~~~M~~~g~~p~~~ty~ 176 (442)
..+.+|.-|...|+.++|.+.++++. ...+.| .+++..+..++-+.++ .+.+..++..+...|+.+......
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~-~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~ 241 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELE-VPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKR 241 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHC-CGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcC-CCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 34688889999999999999999997 322222 3455566666655443 455778888888877776544433
No 325
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.49 E-value=2.1e+02 Score=22.87 Aligned_cols=66 Identities=11% Similarity=-0.113 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHhHhhCCCCC-CcccH-HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 013497 98 IPNEASVTSVARLAASKNDG---DYAFVLIKRMNNEFNVVP-RLRTY-DPALFCFCENLEAEKAYEVEEHMGLM 166 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~---~~A~~~~~~m~~~~g~~p-~~~ty-~~li~~~~~~g~~~~A~~l~~~M~~~ 166 (442)
.|+..|-=.+.-++++.... .+++.++++.. +. .| +.+-| =.|--|+.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~-~~--~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY-KE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHH-HH--CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hc--CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34444444444555555543 35666666665 32 23 22222 22334566777777777777777664
No 326
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.39 E-value=7.1e+02 Score=26.35 Aligned_cols=124 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCC
Q 013497 62 NALLY-LCSDSATDPSSKDSALRHGFRVFDQMLSNN----VIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPR 136 (442)
Q Consensus 62 ~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g----~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 136 (442)
..++. +|..+. ....+.|.+.|+.....+ +.||... ++...-.+.|.-++-..+++..+ ... +
T Consensus 690 ~~~l~~ac~~g~------~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~-~~~---~ 757 (909)
T 4fke_A 690 INAISTACSNGL------PQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQ-QAQ---L 757 (909)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHH-HCC---S
T ss_pred HHHHHHHHHhcc------HHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHH-ccC---C
Q ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013497 137 LRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQK 197 (442)
Q Consensus 137 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~ 197 (442)
..--..++.+++...+.+...++++................+.......--.+.|.+.+.+
T Consensus 758 ~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 758 VNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHH
No 327
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=21.97 E-value=1.2e+02 Score=24.00 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=19.9
Q ss_pred CCCCCCccHHHHHHHHhcCcEEEecC
Q 013497 393 TPHGSNDDWYWLYAAVKLRCLLVTND 418 (442)
Q Consensus 393 ~~~~~~DD~~~l~aa~~~~~~~vsnD 418 (442)
++.+ . |.+++-.|...++.+||||
T Consensus 95 ~~~~-~-D~~Ila~A~~~~~~LvT~D 118 (147)
T 1o4w_A 95 TESE-G-DPSLIEAAEKYGCILITND 118 (147)
T ss_dssp CSSC-S-HHHHHHHHHHHTCEEECCC
T ss_pred CCCC-c-hHHHHHHHHHhCCEEEECC
Confidence 3434 5 8889999999999999999
No 328
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=21.92 E-value=4.5e+02 Score=24.39 Aligned_cols=104 Identities=11% Similarity=0.005 Sum_probs=52.1
Q ss_pred HHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCC-CCCCcccHHHHHHHHHHcCCHHHHHH
Q 013497 86 FRVFDQMLSNNV------IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFN-VVPRLRTYDPALFCFCENLEAEKAYE 158 (442)
Q Consensus 86 ~~l~~~M~~~g~------~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ 158 (442)
.++.+.+.+.|. .+|....+.|. ..++.|+.+-+..+++.-. ... ..++...+++ +...+..|..+-+.
T Consensus 105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~-~Aa~~G~~eiv~~Ll~~ga-d~~~~~i~~~~~Tp-Lh~Aa~~G~~eiv~- 180 (376)
T 2aja_A 105 SSALDTLCLLLTSDEIVKVIQAENYQAFR-LAAENGHLHVLNRLCELAP-TEIMAMIQAENYHA-FRLAAENGHLHVLN- 180 (376)
T ss_dssp HHHHHHHTTC--CCSSCC--CHHHHHHHH-HHHHTTCHHHHHHHHHSCT-TTHHHHHSHHHHHH-HHHHHHTTCHHHHH-
T ss_pred HHHHHHHHHcCCcHHHHHHhccCCCCHHH-HHHHcCCHHHHHHHHhCCC-CccccccCCCCCCH-HHHHHHCCCHHHHH-
Confidence 444555555555 45666666444 4467788776666553321 000 1122233444 45556778875444
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013497 159 VEEHMGLMGLSL-----EQQEIAALLKVSAETGRVEKVYQYLQ 196 (442)
Q Consensus 159 l~~~M~~~g~~p-----~~~ty~~li~~~~~~g~~~~a~~ll~ 196 (442)
.+.+.|..+ |..-.+.|.-+.+..|..+-+.-+++
T Consensus 181 ---~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 181 ---RLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp ---HHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred ---HHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence 444556553 33345555555437788766655543
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.88 E-value=1.4e+02 Score=25.81 Aligned_cols=70 Identities=13% Similarity=-0.072 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc-ccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 013497 98 IPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL-RTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLE 171 (442)
Q Consensus 98 ~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~ 171 (442)
.=|.--....|..--. .+++.++|..|. ..||--.. --|...-..+-..|++.+|.+||+.=.+.+-.|-
T Consensus 114 knD~RyLklWl~Ya~~---~~~p~~if~~L~-~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 114 KDDVRYLRIWMQYVNY---IDEPVELFSFLA-HHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp TTCHHHHHHHHHHHTT---CSCHHHHHHHHH-HTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred cCCHHHHHHHHHHHHc---cCCHHHHHHHHH-HCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3455444444443222 246778888888 66665444 4577777778889999999999999888888883
No 330
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=21.63 E-value=4.8e+02 Score=24.04 Aligned_cols=166 Identities=14% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCCCCHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVIPNEASV 104 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~p~~~ty 104 (442)
+|.++..-|.+.+++++|++++..-- ..|+. .+. .+ ...|.|.-+.+-..+.++++|..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-----------~~ll~---~~Q-~~----sg~DL~~llvevy~~~~~~~~~~~~ 97 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS-----------QTLLR---SGQ-GG----SGGDLAVLLVDTFRQAGQRVDGASR 97 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHH---TTC-HH----HHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH-----------HHHHH---CCC-cc----hHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88999999999999999998765411 01111 100 00 0244455555666667788888777
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHHhHh---hCC--CCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 013497 105 TSVARLAASKNDGD-YAFVLIKRMNN---EFN--VVPRLRTYDPALFCFCENLEAEKAYEVEEHMGLMGLSLEQQEIAAL 178 (442)
Q Consensus 105 ~~li~~~~~~g~~~-~A~~~~~~m~~---~~g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~l 178 (442)
.-|+..+.....-+ .=..+++++.. +.| -.-|...-..+-..|.+.+++.+|..-| + .|-.+...+|..|
T Consensus 98 ~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~m 173 (336)
T 3lpz_A 98 GKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARM 173 (336)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHH
Confidence 77777776665421 11223333320 112 1123444556677888889988888776 2 2444444566555
Q ss_pred HHHHHhcCCHHH-----HHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 179 LKVSAETGRVEK-----VYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 179 i~~~~~~g~~~~-----a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
+--+...+...+ +..+|..+. .-+....+.++..|
T Consensus 174 L~ew~~~~~~~e~dlfiaRaVL~yL~----l~n~~~A~~~~~~f 213 (336)
T 3lpz_A 174 EYEWYKQDESHTAPLYCARAVLPYLL----VANVRAANTAYRIF 213 (336)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence 544444333222 223333332 23555555555555
No 331
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=21.22 E-value=1.2e+02 Score=22.01 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=4.8
Q ss_pred HHHhcCCHHHH
Q 013497 32 SCTKSKDLTTA 42 (442)
Q Consensus 32 ~~~k~g~~~~A 42 (442)
..++.|+.+-.
T Consensus 8 ~A~~~~~~~~v 18 (126)
T 1n0r_A 8 LAARNGHLEVV 18 (126)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHcCcHHHH
Confidence 33444554433
No 332
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.02 E-value=1.8e+02 Score=22.93 Aligned_cols=54 Identities=6% Similarity=-0.013 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCc
Q 013497 81 ALRHGFRVFDQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRL 137 (442)
Q Consensus 81 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 137 (442)
...+++.++++....+..-..-.+=-|.-|+.+.|+.++|.+..+.+. .+.|+-
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL---~~eP~N 111 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF---EHERNN 111 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCTTC
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hhCCCC
Confidence 677899999998876632234445566678999999999999999988 357764
No 333
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=20.83 E-value=3.2e+02 Score=21.76 Aligned_cols=70 Identities=9% Similarity=0.016 Sum_probs=48.0
Q ss_pred HHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccCCCChHHHHHHHHHh
Q 013497 146 CFCENL---EAEKAYEVEEHMGLMGLSLEQQEIAALLKVSAETGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 217 (442)
Q Consensus 146 ~~~~~g---~~~~A~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~li~~~ 217 (442)
++.+.. +..++..+++++...+-.-.....-.|--|+.+.|++++|.++.+.+.+. .|+..-...|....
T Consensus 48 ~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 48 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGALKSMV 120 (144)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 444544 45678889999887542222333345556788999999999999999875 68766665555444
No 334
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=20.49 E-value=2.1e+02 Score=26.80 Aligned_cols=111 Identities=8% Similarity=-0.010 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHhCCCC---
Q 013497 28 INLQSCTKSKDLTTAISLYESAHSQNL------RLSLHHFNALLYLCSDSATDPSSKDSALRHGFRVFDQMLSNNVI--- 98 (442)
Q Consensus 28 ~li~~~~k~g~~~~A~~lf~~m~~~g~------~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l~~~M~~~g~~--- 98 (442)
+-|...++.|+.+-+..++ +.|. .++....+.|..++..+. .++.+.+.+.|..
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll----~~ga~~~~~~~~~~~~~tpL~~Aa~~G~-------------~eiv~~Ll~~gad~~~ 156 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLC----LLLTSDEIVKVIQAENYQAFRLAAENGH-------------LHVLNRLCELAPTEIM 156 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHT----TC--CCSSCC--CHHHHHHHHHHHHTTC-------------HHHHHHHHHSCTTTHH
T ss_pred CHHHHHHHcCCHHHHHHHH----HcCCcHHHHHHhccCCCCHHHHHHHcCC-------------HHHHHHHHhCCCCccc
Confidence 4556667778877665554 3443 456667777777777665 5566666777742
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCC-----CCcccHHHHHHHHHHcCCHHHHHHHHH
Q 013497 99 --PNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVV-----PRLRTYDPALFCFCENLEAEKAYEVEE 161 (442)
Q Consensus 99 --p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-----p~~~ty~~li~~~~~~g~~~~A~~l~~ 161 (442)
++...+ +-+...+..|+.+-+..+++ .|.. .|..-.++|..+.+..|..+-+.-+++
T Consensus 157 ~~i~~~~~-TpLh~Aa~~G~~eiv~~Ll~-----~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 157 AMIQAENY-HAFRLAAENGHLHVLNRLCE-----LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp HHHSHHHH-HHHHHHHHTTCHHHHHHHHH-----SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred cccCCCCC-CHHHHHHHCCCHHHHHHHHH-----cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence 333344 44555578888876665554 3333 233345565555448888776655543
No 335
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.45 E-value=2.1e+02 Score=25.70 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcC
Q 013497 26 FLINLQSCTKSKDLTTAISLYESAHSQNLRLSLH----HFNALLYLCSDSA 72 (442)
Q Consensus 26 ~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~----ty~~ll~~~~~~~ 72 (442)
=++.|...++.|+++-+..+++ .|..||.. -++.|..++..+.
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~ 71 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSR 71 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred CChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCC
Confidence 3556666788999887766654 45444321 2345555665543
No 336
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.24 E-value=2.5e+02 Score=22.00 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=38.8
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHhhCCCCCCcccHHHHHHHHHHcCCHH
Q 013497 90 DQMLSNNVIPNEASVTSVARLAASKNDGDYAFVLIKRMNNEFNVVPRLRTYDPALFCFCENLEAE 154 (442)
Q Consensus 90 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ty~~li~~~~~~g~~~ 154 (442)
+.|++.|++++..= -.++..+...+..-.|.++++.++ +.+-..+..|.--.|..+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~-~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALE-GKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHG-GGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHH-HhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34566777655332 344555555666667777777777 5544445556666677777777764
No 337
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.21 E-value=1.4e+02 Score=24.33 Aligned_cols=60 Identities=7% Similarity=-0.005 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCCCCchhhHHHHHHHHHHHH
Q 013497 25 NFLINLQSCTKSKDLTTAISLYESAHSQNLRLSLHHFNALLY-LCSDSATDPSSKDSALRHGFRVFDQML 93 (442)
Q Consensus 25 ~~~~li~~~~k~g~~~~A~~lf~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~l~~~M~ 93 (442)
....+|+-|...+|.++|...++++......| .....+|. ++-+.. ..-+.+-.++..+.
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~--~~V~~~I~~aldrk~-------~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKA-------SHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG--HHHHHHHHHHHTSCH-------HHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH--HHHHHHHHHHHcCCH-------HHHHHHHHHHHHHH
Confidence 67889999999999999999999987443322 22223333 333321 13445677777774
Done!