Query 013498
Match_columns 442
No_of_seqs 224 out of 1919
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013498.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013498hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02321 2-isopropylmalate syn 100.0 3E-98 6E-103 802.3 43.7 392 48-440 55-446 (632)
2 PLN03228 methylthioalkylmalate 100.0 1.9E-93 4.2E-98 749.8 42.1 377 64-440 69-445 (503)
3 TIGR00973 leuA_bact 2-isopropy 100.0 1.4E-89 3E-94 724.8 40.0 347 79-440 1-347 (494)
4 PRK00915 2-isopropylmalate syn 100.0 1.8E-89 4E-94 727.7 40.6 349 77-440 2-350 (513)
5 KOG2367 Alpha-isopropylmalate 100.0 5.4E-89 1.2E-93 686.7 36.7 357 71-440 49-405 (560)
6 PRK11858 aksA trans-homoaconit 100.0 1.1E-88 2.4E-93 698.1 38.2 337 77-440 2-338 (378)
7 TIGR02660 nifV_homocitr homoci 100.0 8.6E-88 1.9E-92 688.9 37.8 334 80-440 2-335 (365)
8 PRK09389 (R)-citramalate synth 100.0 1E-87 2.2E-92 709.2 37.6 335 79-440 2-336 (488)
9 TIGR00977 LeuA_rel 2-isopropyl 100.0 2.7E-87 5.9E-92 710.5 39.3 341 79-440 1-350 (526)
10 PRK03739 2-isopropylmalate syn 100.0 6.3E-87 1.4E-91 711.3 40.6 349 77-440 28-401 (552)
11 TIGR02090 LEU1_arch isopropylm 100.0 1E-86 2.2E-91 680.2 37.3 334 80-440 1-334 (363)
12 TIGR00970 leuA_yeast 2-isoprop 100.0 1.3E-85 2.8E-90 702.7 40.7 350 77-440 24-404 (564)
13 COG0119 LeuA Isopropylmalate/h 100.0 1E-85 2.2E-90 677.4 34.8 343 78-440 1-344 (409)
14 PRK12344 putative alpha-isopro 100.0 3.8E-85 8.2E-90 694.9 39.2 344 76-439 2-352 (524)
15 PRK14847 hypothetical protein; 100.0 7.2E-72 1.6E-76 557.8 37.5 297 65-378 23-331 (333)
16 cd07945 DRE_TIM_CMS Leptospira 100.0 5.2E-63 1.1E-67 488.7 33.9 276 83-375 1-280 (280)
17 cd07942 DRE_TIM_LeuA Mycobacte 100.0 5.1E-62 1.1E-66 481.4 33.4 269 82-362 4-284 (284)
18 cd07948 DRE_TIM_HCS Saccharomy 100.0 1.6E-61 3.6E-66 473.8 32.5 262 80-362 1-262 (262)
19 PLN02746 hydroxymethylglutaryl 100.0 9.1E-61 2E-65 482.7 34.3 272 76-372 43-332 (347)
20 cd07939 DRE_TIM_NifV Streptomy 100.0 8.5E-61 1.8E-65 468.5 32.2 258 82-362 1-258 (259)
21 cd07940 DRE_TIM_IPMS 2-isoprop 100.0 1.5E-60 3.2E-65 469.0 32.3 268 82-362 1-268 (268)
22 PRK05692 hydroxymethylglutaryl 100.0 1.5E-59 3.3E-64 465.5 34.4 267 77-369 2-287 (287)
23 TIGR02146 LysS_fung_arch homoc 100.0 5.4E-58 1.2E-62 464.1 36.7 332 82-440 1-332 (344)
24 cd07941 DRE_TIM_LeuA3 Desulfob 100.0 2.4E-58 5.1E-63 454.6 31.8 264 82-362 1-273 (273)
25 cd07938 DRE_TIM_HMGL 3-hydroxy 100.0 2.3E-57 5.1E-62 447.4 31.5 254 82-361 1-273 (274)
26 cd07947 DRE_TIM_Re_CS Clostrid 100.0 3.1E-57 6.8E-62 446.8 31.5 259 80-361 1-278 (279)
27 cd03174 DRE_TIM_metallolyase D 100.0 7.1E-55 1.5E-59 425.2 30.3 256 83-361 1-264 (265)
28 cd07943 DRE_TIM_HOA 4-hydroxy- 100.0 3.8E-54 8.3E-59 422.4 30.4 246 80-362 1-260 (263)
29 cd07937 DRE_TIM_PC_TC_5S Pyruv 100.0 1.7E-54 3.8E-59 427.4 27.6 246 82-365 1-270 (275)
30 cd07944 DRE_TIM_HOA_like 4-hyd 100.0 3.1E-54 6.6E-59 423.7 27.7 246 82-363 1-259 (266)
31 PF00682 HMGL-like: HMGL-like 100.0 3.4E-54 7.3E-59 415.6 25.8 236 88-336 1-236 (237)
32 PRK08195 4-hyroxy-2-oxovalerat 100.0 1.5E-51 3.3E-56 416.6 32.1 252 78-362 2-264 (337)
33 PRK14040 oxaloacetate decarbox 100.0 2.7E-51 5.8E-56 439.7 33.9 297 78-437 3-315 (593)
34 TIGR03217 4OH_2_O_val_ald 4-hy 100.0 5.7E-51 1.2E-55 411.6 31.7 248 78-361 1-262 (333)
35 PRK12330 oxaloacetate decarbox 100.0 4.3E-50 9.4E-55 420.3 30.8 279 77-392 2-317 (499)
36 TIGR01108 oadA oxaloacetate de 100.0 6.4E-50 1.4E-54 428.7 32.1 283 82-437 1-309 (582)
37 PRK12331 oxaloacetate decarbox 100.0 1.8E-49 3.8E-54 413.7 30.5 259 78-364 2-274 (448)
38 PRK09282 pyruvate carboxylase 100.0 6.3E-49 1.4E-53 422.1 34.0 295 78-436 2-313 (592)
39 PRK14041 oxaloacetate decarbox 100.0 2.2E-48 4.8E-53 406.3 32.2 260 79-364 2-273 (467)
40 PRK12581 oxaloacetate decarbox 100.0 9.8E-45 2.1E-49 377.0 33.0 267 76-366 9-285 (468)
41 PRK12999 pyruvate carboxylase; 100.0 9.5E-45 2.1E-49 413.7 27.3 278 65-366 518-813 (1146)
42 PRK14042 pyruvate carboxylase 100.0 4E-43 8.6E-48 375.4 32.0 264 78-365 2-275 (596)
43 TIGR01235 pyruv_carbox pyruvat 100.0 9E-38 2E-42 355.4 27.1 276 66-365 517-810 (1143)
44 KOG2368 Hydroxymethylglutaryl- 100.0 1.1E-35 2.3E-40 276.9 24.3 271 76-370 15-302 (316)
45 COG5016 Pyruvate/oxaloacetate 100.0 1.2E-34 2.5E-39 289.5 24.4 299 78-436 4-316 (472)
46 COG1038 PycA Pyruvate carboxyl 99.9 2.4E-23 5.2E-28 221.3 14.2 277 65-365 521-815 (1149)
47 KOG0369 Pyruvate carboxylase [ 99.8 3.2E-19 7E-24 186.8 16.5 266 77-366 557-841 (1176)
48 TIGR02146 LysS_fung_arch homoc 99.7 1.9E-25 4.2E-30 226.2 -48.2 225 198-437 90-315 (344)
49 PRK07028 bifunctional hexulose 98.5 2.2E-06 4.8E-11 90.2 16.0 171 97-311 12-188 (430)
50 TIGR00262 trpA tryptophan synt 98.2 0.00021 4.5E-09 70.4 19.3 175 99-310 22-224 (256)
51 TIGR00423 radical SAM domain p 98.1 0.00043 9.2E-09 69.8 21.6 223 96-337 34-296 (309)
52 PLN02591 tryptophan synthase 98.1 0.00042 9E-09 68.0 20.4 175 99-310 14-215 (250)
53 TIGR03699 mena_SCO4550 menaqui 98.1 0.00031 6.7E-09 71.7 20.0 223 96-337 70-327 (340)
54 TIGR03700 mena_SCO4494 putativ 98.1 0.00027 5.8E-09 72.6 19.4 224 96-337 77-338 (351)
55 CHL00200 trpA tryptophan synth 98.1 0.00024 5.3E-09 70.2 18.1 175 99-310 27-228 (263)
56 TIGR03551 F420_cofH 7,8-dideme 98.0 0.00067 1.5E-08 69.4 19.5 223 96-337 68-332 (343)
57 PRK13111 trpA tryptophan synth 98.0 0.001 2.3E-08 65.5 19.6 159 99-290 24-211 (258)
58 PRK08445 hypothetical protein; 97.9 0.0016 3.4E-08 67.0 21.3 222 96-337 71-332 (348)
59 PRK13125 trpA tryptophan synth 97.7 0.0072 1.6E-07 59.0 20.1 176 98-310 15-211 (244)
60 PRK08444 hypothetical protein; 97.7 0.0044 9.4E-08 63.9 19.4 251 69-337 47-337 (353)
61 PRK07360 FO synthase subunit 2 97.7 0.0062 1.4E-07 63.1 20.5 221 95-337 88-354 (371)
62 PF00290 Trp_syntA: Tryptophan 97.5 0.0022 4.8E-08 63.2 14.3 173 99-310 22-223 (259)
63 COG0159 TrpA Tryptophan syntha 97.5 0.0058 1.2E-07 60.2 16.1 149 99-276 29-204 (265)
64 PRK07094 biotin synthase; Prov 97.4 0.019 4.2E-07 57.9 20.5 197 96-314 68-281 (323)
65 PRK15108 biotin synthase; Prov 97.4 0.071 1.5E-06 54.8 24.0 220 97-337 75-309 (345)
66 TIGR03128 RuMP_HxlA 3-hexulose 97.4 0.01 2.2E-07 55.9 16.4 170 98-312 9-185 (206)
67 PLN02389 biotin synthase 97.3 0.04 8.7E-07 57.3 21.2 218 97-336 115-350 (379)
68 cd00945 Aldolase_Class_I Class 97.3 0.084 1.8E-06 48.5 21.2 179 99-310 11-198 (201)
69 cd04726 KGPDC_HPS 3-Keto-L-gul 97.2 0.018 3.9E-07 53.9 16.1 167 98-310 10-183 (202)
70 PRK05927 hypothetical protein; 97.2 0.016 3.4E-07 59.7 16.6 207 96-315 74-306 (350)
71 TIGR00433 bioB biotin syntheta 97.2 0.25 5.3E-06 49.1 24.5 219 97-335 61-293 (296)
72 PRK05926 hypothetical protein; 97.2 0.022 4.7E-07 59.1 17.3 200 95-316 96-331 (370)
73 cd04724 Tryptophan_synthase_al 97.1 0.028 6.2E-07 54.8 17.0 175 99-310 12-212 (242)
74 PRK06256 biotin synthase; Vali 97.0 0.13 2.8E-06 52.3 21.4 217 97-336 90-320 (336)
75 PRK06552 keto-hydroxyglutarate 97.0 0.062 1.4E-06 51.5 17.6 157 98-310 22-180 (213)
76 PRK05301 pyrroloquinoline quin 97.0 0.098 2.1E-06 54.1 20.3 143 96-254 44-189 (378)
77 PRK09613 thiH thiamine biosynt 96.9 0.24 5.2E-06 53.0 22.9 197 95-312 112-337 (469)
78 TIGR01496 DHPS dihydropteroate 96.9 0.26 5.6E-06 48.6 21.2 160 82-273 5-190 (257)
79 PRK13361 molybdenum cofactor b 96.9 0.045 9.8E-07 55.7 16.3 143 96-251 43-187 (329)
80 PRK09240 thiH thiamine biosynt 96.7 0.25 5.4E-06 51.2 20.8 222 96-337 102-356 (371)
81 PRK08508 biotin synthase; Prov 96.7 0.24 5.3E-06 49.3 19.7 220 98-336 40-270 (279)
82 PRK05718 keto-hydroxyglutarate 96.6 0.15 3.2E-06 48.9 16.9 154 97-306 23-176 (212)
83 TIGR02351 thiH thiazole biosyn 96.6 0.44 9.4E-06 49.4 21.4 170 96-279 101-291 (366)
84 cd00452 KDPG_aldolase KDPG and 96.6 0.25 5.5E-06 46.1 17.8 157 99-312 14-170 (190)
85 PRK06245 cofG FO synthase subu 96.5 0.53 1.1E-05 47.9 21.5 222 97-337 40-298 (336)
86 TIGR02109 PQQ_syn_pqqE coenzym 96.5 0.13 2.8E-06 52.7 16.9 142 96-253 35-179 (358)
87 PRK13397 3-deoxy-7-phosphohept 96.5 0.27 5.8E-06 48.3 18.1 182 98-316 26-224 (250)
88 TIGR01163 rpe ribulose-phospha 96.4 0.6 1.3E-05 43.7 19.7 174 97-311 7-191 (210)
89 TIGR03550 F420_cofG 7,8-dideme 96.4 0.25 5.4E-06 50.2 18.2 222 95-337 32-294 (322)
90 TIGR01182 eda Entner-Doudoroff 96.4 0.32 6.9E-06 46.4 17.7 154 98-310 17-173 (204)
91 PRK09997 hydroxypyruvate isome 96.4 0.3 6.6E-06 47.5 17.9 186 104-338 18-233 (258)
92 COG0269 SgbH 3-hexulose-6-phos 96.3 0.09 1.9E-06 50.3 13.3 125 97-253 12-136 (217)
93 TIGR01769 GGGP geranylgeranylg 96.3 0.57 1.2E-05 44.7 18.6 174 101-310 11-202 (205)
94 TIGR03470 HpnH hopanoid biosyn 96.3 0.16 3.5E-06 51.5 15.9 159 97-275 58-228 (318)
95 PLN02951 Molybderin biosynthes 96.2 0.44 9.5E-06 49.5 18.9 168 96-277 88-264 (373)
96 PRK13307 bifunctional formalde 96.2 0.16 3.5E-06 53.0 15.6 170 98-310 182-355 (391)
97 cd00331 IGPS Indole-3-glycerol 96.2 0.43 9.4E-06 45.3 17.5 167 99-310 29-198 (217)
98 PRK09234 fbiC FO synthase; Rev 96.2 0.2 4.3E-06 57.3 17.2 201 95-315 554-790 (843)
99 PRK09140 2-dehydro-3-deoxy-6-p 96.1 0.4 8.7E-06 45.7 16.9 158 98-311 19-177 (206)
100 PRK09856 fructoselysine 3-epim 96.1 0.25 5.5E-06 48.3 16.1 203 103-339 15-241 (275)
101 PRK06801 hypothetical protein; 96.1 1 2.2E-05 45.2 20.3 190 89-313 15-233 (286)
102 cd00954 NAL N-Acetylneuraminic 96.1 1.7 3.8E-05 43.3 22.7 196 97-335 17-221 (288)
103 PRK06015 keto-hydroxyglutarate 96.1 0.48 1E-05 45.1 16.8 153 98-308 13-167 (201)
104 COG0502 BioB Biotin synthase a 96.0 0.89 1.9E-05 46.5 19.6 222 95-336 81-315 (335)
105 PRK13209 L-xylulose 5-phosphat 96.0 0.34 7.5E-06 47.6 16.5 202 97-338 20-246 (283)
106 TIGR01859 fruc_bis_ald_ fructo 96.0 1.1 2.3E-05 44.9 19.7 185 97-313 23-230 (282)
107 TIGR02320 PEP_mutase phosphoen 96.0 1.2 2.7E-05 44.6 20.1 164 161-337 90-262 (285)
108 TIGR03234 OH-pyruv-isom hydrox 95.9 1 2.2E-05 43.6 19.1 190 105-338 18-232 (254)
109 TIGR02320 PEP_mutase phosphoen 95.9 0.38 8.2E-06 48.2 16.1 124 197-334 61-203 (285)
110 cd04740 DHOD_1B_like Dihydroor 95.9 0.85 1.8E-05 45.5 18.7 136 160-313 99-260 (296)
111 PRK00507 deoxyribose-phosphate 95.9 1.3 2.8E-05 42.8 19.1 191 82-313 9-208 (221)
112 PRK13210 putative L-xylulose 5 95.9 0.22 4.8E-06 48.8 14.2 208 97-338 15-247 (284)
113 TIGR00126 deoC deoxyribose-pho 95.8 0.82 1.8E-05 43.8 17.2 192 82-313 5-204 (211)
114 PRK07998 gatY putative fructos 95.8 1.8 3.8E-05 43.5 20.0 183 97-312 25-228 (283)
115 KOG4175 Tryptophan synthase al 95.7 0.86 1.9E-05 43.3 16.4 158 99-286 30-214 (268)
116 cd00408 DHDPS-like Dihydrodipi 95.7 2.4 5.2E-05 41.8 23.5 195 97-335 14-216 (281)
117 PRK00164 moaA molybdenum cofac 95.7 0.43 9.2E-06 48.4 15.9 142 96-250 47-190 (331)
118 cd00959 DeoC 2-deoxyribose-5-p 95.7 0.69 1.5E-05 43.7 16.3 190 82-312 4-202 (203)
119 PRK01060 endonuclease IV; Prov 95.7 2.3 5E-05 41.7 20.6 207 103-337 14-250 (281)
120 PRK07315 fructose-bisphosphate 95.6 2 4.3E-05 43.3 20.1 187 97-314 25-233 (293)
121 COG2896 MoaA Molybdenum cofact 95.6 0.55 1.2E-05 47.8 16.1 147 97-257 42-192 (322)
122 PRK11320 prpB 2-methylisocitra 95.6 1.1 2.4E-05 45.1 18.0 204 107-337 30-256 (292)
123 cd00950 DHDPS Dihydrodipicolin 95.6 2.4 5.2E-05 42.0 20.4 194 97-335 17-219 (284)
124 PRK07114 keto-hydroxyglutarate 95.6 0.68 1.5E-05 44.8 15.8 158 98-310 24-185 (222)
125 cd02810 DHOD_DHPD_FMN Dihydroo 95.5 1.9 4.1E-05 42.7 19.4 91 160-257 108-199 (289)
126 PRK13398 3-deoxy-7-phosphohept 95.5 1.8 3.9E-05 42.9 19.0 205 98-363 38-262 (266)
127 cd00019 AP2Ec AP endonuclease 95.4 0.38 8.2E-06 47.3 14.0 213 98-338 10-250 (279)
128 cd00739 DHPS DHPS subgroup of 95.4 3.1 6.8E-05 41.0 21.6 196 82-310 6-241 (257)
129 TIGR00542 hxl6Piso_put hexulos 95.3 1.3 2.8E-05 43.5 17.5 202 98-339 16-242 (279)
130 PRK07709 fructose-bisphosphate 95.3 3.1 6.7E-05 41.8 20.0 185 97-312 25-232 (285)
131 TIGR02666 moaA molybdenum cofa 95.3 0.43 9.4E-06 48.4 14.3 169 96-277 41-219 (334)
132 cd00423 Pterin_binding Pterin 95.3 3.3 7.1E-05 40.7 20.7 132 95-256 18-173 (258)
133 PRK06267 hypothetical protein; 95.3 2 4.3E-05 44.2 19.2 208 97-330 62-284 (350)
134 PRK12928 lipoyl synthase; Prov 95.2 0.49 1.1E-05 47.5 14.1 164 95-271 84-266 (290)
135 PRK09196 fructose-1,6-bisphosp 95.2 2.2 4.7E-05 44.0 18.8 201 89-312 15-276 (347)
136 PRK08185 hypothetical protein; 95.0 4.3 9.2E-05 40.7 20.1 191 89-312 10-227 (283)
137 TIGR02313 HpaI-NOT-DapA 2,4-di 95.0 4.4 9.5E-05 40.6 23.2 195 98-335 18-221 (294)
138 TIGR03249 KdgD 5-dehydro-4-deo 94.9 3.5 7.6E-05 41.2 19.4 198 97-336 22-225 (296)
139 cd00952 CHBPH_aldolase Trans-o 94.9 4.8 0.0001 40.7 21.3 150 97-271 25-183 (309)
140 PRK09195 gatY tagatose-bisphos 94.8 4.9 0.00011 40.3 20.3 182 97-312 25-231 (284)
141 TIGR02319 CPEP_Pphonmut carbox 94.8 4.9 0.00011 40.5 19.9 204 107-337 29-255 (294)
142 PRK00278 trpC indole-3-glycero 94.8 3 6.5E-05 41.1 18.1 167 99-310 68-237 (260)
143 TIGR03581 EF_0839 conserved hy 94.8 1.7 3.7E-05 41.7 15.4 160 98-274 38-236 (236)
144 PRK09989 hypothetical protein; 94.8 3 6.5E-05 40.5 18.0 194 104-338 18-233 (258)
145 TIGR00587 nfo apurinic endonuc 94.7 3.1 6.7E-05 41.1 18.2 207 104-337 14-250 (274)
146 COG2100 Predicted Fe-S oxidore 94.7 0.82 1.8E-05 46.4 13.7 152 85-248 124-285 (414)
147 PF01081 Aldolase: KDPG and KH 94.7 0.7 1.5E-05 43.8 12.8 155 98-310 17-173 (196)
148 TIGR01858 tag_bisphos_ald clas 94.7 4.6 9.9E-05 40.5 19.2 191 89-312 13-229 (282)
149 PTZ00413 lipoate synthase; Pro 94.6 2 4.3E-05 44.8 16.9 159 96-270 175-356 (398)
150 PRK12857 fructose-1,6-bisphosp 94.6 5.5 0.00012 39.9 20.2 182 97-312 25-231 (284)
151 PRK12595 bifunctional 3-deoxy- 94.6 3.6 7.8E-05 42.6 18.8 208 99-365 130-355 (360)
152 COG1060 ThiH Thiamine biosynth 94.6 2.2 4.7E-05 44.4 17.2 259 66-337 54-350 (370)
153 TIGR00284 dihydropteroate synt 94.6 4.8 0.0001 43.6 20.3 175 101-313 165-351 (499)
154 PF00701 DHDPS: Dihydrodipicol 94.6 5.4 0.00012 39.6 21.6 194 97-335 18-220 (289)
155 cd00951 KDGDH 5-dehydro-4-deox 94.5 4.7 0.0001 40.2 19.1 197 97-335 17-219 (289)
156 PF04055 Radical_SAM: Radical 94.5 0.81 1.7E-05 39.8 12.2 137 95-242 25-165 (166)
157 PRK08610 fructose-bisphosphate 94.5 5.4 0.00012 40.0 19.3 184 97-312 25-232 (286)
158 TIGR02317 prpB methylisocitrat 94.5 2.8 6E-05 42.1 17.1 204 107-337 26-251 (285)
159 TIGR02668 moaA_archaeal probab 94.4 2 4.4E-05 42.8 16.4 140 96-250 38-180 (302)
160 PF01261 AP_endonuc_2: Xylose 94.4 0.019 4.2E-07 52.9 1.6 165 107-293 1-196 (213)
161 TIGR00674 dapA dihydrodipicoli 94.4 5.9 0.00013 39.3 22.2 194 97-335 15-217 (285)
162 smart00729 Elp3 Elongator prot 94.3 3 6.5E-05 37.8 16.1 150 96-255 28-188 (216)
163 PRK07535 methyltetrahydrofolat 94.3 4.5 9.7E-05 40.0 18.1 167 98-294 22-203 (261)
164 COG0329 DapA Dihydrodipicolina 94.2 1.5 3.3E-05 44.1 14.7 215 98-363 22-243 (299)
165 PRK13399 fructose-1,6-bisphosp 94.1 5.3 0.00011 41.2 18.7 201 89-312 15-276 (347)
166 PRK12738 kbaY tagatose-bisphos 94.1 7.1 0.00015 39.2 20.5 182 97-312 25-231 (286)
167 PLN02428 lipoic acid synthase 94.1 2.1 4.5E-05 44.2 15.8 142 96-253 128-281 (349)
168 COG2513 PrpB PEP phosphonomuta 94.1 0.58 1.3E-05 46.7 11.2 107 198-310 62-183 (289)
169 PRK13585 1-(5-phosphoribosyl)- 94.1 4.3 9.4E-05 39.0 17.3 174 102-312 33-221 (241)
170 TIGR00167 cbbA ketose-bisphosp 94.1 7.1 0.00015 39.3 19.1 184 97-312 25-235 (288)
171 PRK07084 fructose-bisphosphate 94.0 6.4 0.00014 40.2 18.8 187 97-312 31-267 (321)
172 COG2876 AroA 3-deoxy-D-arabino 93.9 0.72 1.6E-05 45.5 11.3 165 99-275 57-280 (286)
173 TIGR01521 FruBisAldo_II_B fruc 93.8 7.9 0.00017 39.9 19.2 193 97-312 23-274 (347)
174 PF04131 NanE: Putative N-acet 93.8 0.26 5.6E-06 46.4 7.8 71 238-319 55-125 (192)
175 cd04732 HisA HisA. Phosphorib 93.8 2.4 5.2E-05 40.5 14.8 173 100-310 28-216 (234)
176 cd00947 TBP_aldolase_IIB Tagat 93.8 8.1 0.00018 38.6 20.1 183 97-312 20-225 (276)
177 TIGR00735 hisF imidazoleglycer 93.8 3.4 7.3E-05 40.4 16.0 193 102-336 31-249 (254)
178 TIGR01290 nifB nitrogenase cof 93.7 3.8 8.3E-05 43.6 17.3 170 96-277 58-260 (442)
179 smart00518 AP2Ec AP endonuclea 93.6 4.3 9.4E-05 39.5 16.7 204 105-337 14-246 (273)
180 TIGR01496 DHPS dihydropteroate 93.6 0.58 1.3E-05 46.1 10.4 78 227-313 15-102 (257)
181 TIGR01361 DAHP_synth_Bsub phos 93.5 4.6 0.0001 39.9 16.6 180 96-315 34-233 (260)
182 TIGR01037 pyrD_sub1_fam dihydr 93.5 7.8 0.00017 38.7 18.5 89 160-257 100-192 (300)
183 PRK13813 orotidine 5'-phosphat 93.5 1.6 3.4E-05 41.5 12.8 172 98-312 13-191 (215)
184 COG2513 PrpB PEP phosphonomuta 93.5 8 0.00017 38.8 17.9 205 107-337 31-256 (289)
185 COG0274 DeoC Deoxyribose-phosp 93.5 2.2 4.8E-05 41.2 13.6 116 238-357 81-205 (228)
186 PRK07455 keto-hydroxyglutarate 93.5 6.7 0.00014 36.7 17.4 156 99-310 22-177 (187)
187 COG0800 Eda 2-keto-3-deoxy-6-p 93.4 0.89 1.9E-05 43.5 10.8 154 98-310 22-178 (211)
188 PRK12737 gatY tagatose-bisphos 93.4 9.4 0.0002 38.3 18.7 192 88-313 14-232 (284)
189 TIGR01303 IMP_DH_rel_1 IMP deh 93.4 0.3 6.6E-06 52.3 8.6 73 234-315 224-296 (475)
190 PRK09234 fbiC FO synthase; Rev 93.4 6.9 0.00015 45.1 19.7 223 94-337 98-364 (843)
191 cd00958 DhnA Class I fructose- 93.3 3.3 7.1E-05 39.7 15.0 182 95-312 15-213 (235)
192 cd00429 RPE Ribulose-5-phospha 93.3 6.9 0.00015 36.4 17.6 174 96-310 7-191 (211)
193 PRK07259 dihydroorotate dehydr 93.2 9 0.0002 38.3 18.5 138 105-257 27-192 (301)
194 cd00377 ICL_PEPM Members of th 93.2 7.8 0.00017 37.8 17.4 180 107-312 22-225 (243)
195 PRK13753 dihydropteroate synth 93.2 10 0.00022 38.0 19.6 161 82-274 7-196 (279)
196 PRK15108 biotin synthase; Prov 93.1 0.99 2.2E-05 46.4 11.6 122 197-333 76-206 (345)
197 PRK05835 fructose-bisphosphate 93.0 11 0.00025 38.1 21.3 186 97-312 24-254 (307)
198 COG0826 Collagenase and relate 93.0 0.86 1.9E-05 47.0 10.9 98 161-279 15-114 (347)
199 TIGR00539 hemN_rel putative ox 93.0 3.6 7.8E-05 42.3 15.5 146 98-253 32-186 (360)
200 TIGR02317 prpB methylisocitrat 93.0 1.8 3.9E-05 43.5 12.8 109 198-312 57-180 (285)
201 cd04722 TIM_phosphate_binding 92.9 6.6 0.00014 35.2 17.2 174 101-312 12-198 (200)
202 TIGR03586 PseI pseudaminic aci 92.8 5.6 0.00012 40.7 16.3 140 107-275 103-253 (327)
203 cd02940 DHPD_FMN Dihydropyrimi 92.8 1.4 3.1E-05 44.2 12.0 94 161-259 111-205 (299)
204 cd00377 ICL_PEPM Members of th 92.7 2.5 5.5E-05 41.2 13.3 110 198-312 53-179 (243)
205 cd00952 CHBPH_aldolase Trans-o 92.7 1.1 2.3E-05 45.4 11.0 84 229-314 24-111 (309)
206 PRK13396 3-deoxy-7-phosphohept 92.7 13 0.00028 38.5 18.9 180 97-315 111-310 (352)
207 PRK11320 prpB 2-methylisocitra 92.7 2.2 4.8E-05 42.9 13.1 124 197-334 61-199 (292)
208 PF13714 PEP_mutase: Phosphoen 92.7 1.4 3.1E-05 42.9 11.4 110 197-311 52-173 (238)
209 COG1082 IolE Sugar phosphate i 92.7 3.8 8.2E-05 39.7 14.5 214 98-338 15-243 (274)
210 TIGR00538 hemN oxygen-independ 92.6 4.3 9.3E-05 43.2 15.9 152 114-275 102-274 (455)
211 cd06556 ICL_KPHMT Members of t 92.6 1.2 2.7E-05 43.5 10.8 89 174-275 30-124 (240)
212 cd04731 HisF The cyclase subun 92.5 6.2 0.00013 38.1 15.7 194 101-334 27-241 (243)
213 PRK05660 HemN family oxidoredu 92.5 3 6.6E-05 43.3 14.3 131 113-253 57-193 (378)
214 TIGR00510 lipA lipoate synthas 92.5 2.2 4.7E-05 43.2 12.8 140 98-254 91-242 (302)
215 PRK15452 putative protease; Pr 92.5 1.4 2.9E-05 47.0 11.8 144 153-332 5-152 (443)
216 cd02933 OYE_like_FMN Old yello 92.4 3.8 8.3E-05 42.0 14.7 133 169-310 158-311 (338)
217 PRK10481 hypothetical protein; 92.4 2.6 5.7E-05 40.8 12.6 135 82-261 57-195 (224)
218 PRK04147 N-acetylneuraminate l 92.3 13 0.00028 37.1 24.3 193 98-335 21-222 (293)
219 PRK06096 molybdenum transport 92.3 1.4 3.1E-05 44.1 11.0 133 205-358 109-255 (284)
220 cd02803 OYE_like_FMN_family Ol 92.3 4.6 9.9E-05 40.7 15.0 135 169-310 147-308 (327)
221 TIGR00683 nanA N-acetylneurami 92.3 13 0.00029 37.1 24.0 195 97-335 17-220 (290)
222 TIGR01334 modD putative molybd 92.3 1.6 3.5E-05 43.6 11.3 133 205-358 108-254 (277)
223 PRK09249 coproporphyrinogen II 92.3 5.4 0.00012 42.4 16.1 133 113-255 101-239 (453)
224 PF01116 F_bP_aldolase: Fructo 92.2 12 0.00026 37.6 17.6 183 97-312 24-234 (287)
225 TIGR00683 nanA N-acetylneurami 92.2 1.1 2.4E-05 44.8 10.2 102 228-335 15-121 (290)
226 PRK03170 dihydrodipicolinate s 92.2 13 0.00029 36.9 22.2 195 97-335 18-220 (292)
227 PRK08673 3-deoxy-7-phosphohept 92.1 9.9 0.00021 39.1 17.1 181 98-315 104-301 (335)
228 PRK03170 dihydrodipicolinate s 92.1 1.1 2.3E-05 44.8 10.0 87 228-316 16-106 (292)
229 PRK06806 fructose-bisphosphate 92.0 14 0.00031 36.9 20.3 184 97-313 25-230 (281)
230 PF03102 NeuB: NeuB family; I 92.0 4.1 8.9E-05 39.9 13.7 96 209-315 105-205 (241)
231 cd00951 KDGDH 5-dehydro-4-deox 92.0 1.2 2.6E-05 44.5 10.3 84 228-313 15-101 (289)
232 PRK13347 coproporphyrinogen II 92.0 2.8 6E-05 44.6 13.5 133 113-255 102-240 (453)
233 cd04733 OYE_like_2_FMN Old yel 91.8 2.7 5.8E-05 43.0 12.7 133 168-310 154-319 (338)
234 TIGR01361 DAHP_synth_Bsub phos 91.8 7.5 0.00016 38.4 15.4 113 152-274 134-259 (260)
235 TIGR03569 NeuB_NnaB N-acetylne 91.8 7.9 0.00017 39.7 16.0 139 108-275 103-254 (329)
236 cd01572 QPRTase Quinolinate ph 91.6 3.2 7E-05 41.2 12.7 132 205-358 106-245 (268)
237 PRK04165 acetyl-CoA decarbonyl 91.6 17 0.00038 38.8 18.7 124 98-258 102-235 (450)
238 PRK01130 N-acetylmannosamine-6 91.6 11 0.00024 35.8 16.0 163 99-310 21-199 (221)
239 TIGR02319 CPEP_Pphonmut carbox 91.5 3.2 7E-05 41.8 12.6 110 197-312 60-184 (294)
240 PRK03620 5-dehydro-4-deoxygluc 91.5 17 0.00036 36.6 24.0 196 97-335 24-226 (303)
241 PRK08446 coproporphyrinogen II 91.5 4.8 0.0001 41.3 14.2 128 114-253 51-184 (350)
242 cd02930 DCR_FMN 2,4-dienoyl-Co 91.5 4.4 9.6E-05 41.6 14.0 132 170-310 144-303 (353)
243 PRK08318 dihydropyrimidine deh 91.5 4.9 0.00011 42.3 14.6 164 99-276 111-304 (420)
244 PRK05481 lipoyl synthase; Prov 91.4 5.3 0.00012 40.0 14.1 141 96-253 78-230 (289)
245 PF00701 DHDPS: Dihydrodipicol 91.4 5.2 0.00011 39.7 14.0 100 167-276 26-126 (289)
246 PRK03620 5-dehydro-4-deoxygluc 91.4 1.5 3.3E-05 44.1 10.3 83 228-312 22-107 (303)
247 COG1856 Uncharacterized homolo 91.3 5.1 0.00011 38.8 13.0 137 104-254 100-252 (275)
248 TIGR03822 AblA_like_2 lysine-2 91.3 18 0.00039 36.7 19.4 163 96-279 117-297 (321)
249 cd04740 DHOD_1B_like Dihydroor 91.3 3.1 6.8E-05 41.4 12.4 77 231-312 99-185 (296)
250 TIGR02631 xylA_Arthro xylose i 91.3 2.6 5.6E-05 44.0 12.1 122 101-226 32-179 (382)
251 PRK13398 3-deoxy-7-phosphohept 91.3 15 0.00033 36.4 16.9 153 100-275 77-262 (266)
252 cd01568 QPRTase_NadC Quinolina 91.2 3.5 7.5E-05 40.9 12.5 132 205-358 105-246 (269)
253 cd00950 DHDPS Dihydrodipicolin 91.2 1.5 3.3E-05 43.4 10.0 102 228-335 15-120 (284)
254 cd04728 ThiG Thiazole synthase 91.2 3 6.5E-05 40.9 11.5 168 105-310 24-201 (248)
255 TIGR03249 KdgD 5-dehydro-4-deo 91.2 1.7 3.6E-05 43.6 10.3 83 228-312 20-105 (296)
256 PRK07107 inosine 5-monophospha 91.1 4.3 9.3E-05 44.0 13.9 143 95-255 235-382 (502)
257 TIGR03849 arch_ComA phosphosul 91.0 5.3 0.00011 39.0 13.1 128 205-336 42-183 (237)
258 PLN02858 fructose-bisphosphate 91.0 20 0.00044 43.6 20.7 194 88-311 1110-1329(1378)
259 PRK04147 N-acetylneuraminate l 90.9 1.7 3.6E-05 43.5 10.0 85 228-314 18-107 (293)
260 TIGR02313 HpaI-NOT-DapA 2,4-di 90.8 1.8 3.9E-05 43.4 10.1 85 228-314 15-103 (294)
261 TIGR03551 F420_cofH 7,8-dideme 90.8 1.8 3.9E-05 44.3 10.3 78 229-311 68-156 (343)
262 TIGR01210 conserved hypothetic 90.7 6.6 0.00014 39.8 14.1 155 96-262 83-259 (313)
263 TIGR00674 dapA dihydrodipicoli 90.7 2 4.3E-05 42.7 10.2 85 228-314 13-101 (285)
264 PTZ00170 D-ribulose-5-phosphat 90.7 17 0.00036 35.1 18.3 173 98-310 16-198 (228)
265 cd01335 Radical_SAM Radical SA 90.7 10 0.00022 33.7 14.2 136 101-251 31-173 (204)
266 PLN02417 dihydrodipicolinate s 90.6 2 4.4E-05 42.7 10.2 102 228-335 16-121 (280)
267 COG3473 Maleate cis-trans isom 90.6 7.7 0.00017 37.2 13.2 138 103-277 56-204 (238)
268 COG0191 Fba Fructose/tagatose 90.5 21 0.00045 35.9 17.2 193 89-311 15-232 (286)
269 cd06557 KPHMT-like Ketopantoat 90.4 6.1 0.00013 39.0 13.1 138 104-277 22-193 (254)
270 PRK12595 bifunctional 3-deoxy- 90.3 8.8 0.00019 39.8 14.8 127 130-276 215-354 (360)
271 PRK02083 imidazole glycerol ph 90.3 19 0.0004 35.1 17.2 195 101-336 30-247 (253)
272 PLN02417 dihydrodipicolinate s 90.3 16 0.00035 36.2 16.3 187 98-334 19-214 (280)
273 cd00408 DHDPS-like Dihydrodipi 90.2 2.4 5.3E-05 41.8 10.4 86 228-315 12-101 (281)
274 cd00954 NAL N-Acetylneuraminic 90.2 2.3 4.9E-05 42.4 10.2 84 228-313 15-103 (288)
275 PRK00311 panB 3-methyl-2-oxobu 90.1 5.3 0.00012 39.6 12.5 139 104-277 25-196 (264)
276 COG2089 SpsE Sialic acid synth 90.0 14 0.0003 37.7 15.4 142 106-275 115-266 (347)
277 PRK11613 folP dihydropteroate 90.0 22 0.00049 35.6 23.1 163 79-273 17-205 (282)
278 PRK05628 coproporphyrinogen II 90.0 7.2 0.00016 40.3 14.1 83 169-253 111-194 (375)
279 PRK09240 thiH thiamine biosynt 90.0 16 0.00034 38.0 16.5 111 196-319 103-229 (371)
280 PRK05799 coproporphyrinogen II 90.0 6.9 0.00015 40.3 13.9 83 169-253 102-185 (374)
281 TIGR03586 PseI pseudaminic aci 90.0 8.4 0.00018 39.4 14.1 95 208-314 125-223 (327)
282 PF02679 ComA: (2R)-phospho-3- 90.0 1.5 3.2E-05 43.0 8.3 143 176-336 37-195 (244)
283 PRK00366 ispG 4-hydroxy-3-meth 89.9 7.7 0.00017 40.0 13.6 141 99-244 40-197 (360)
284 cd00959 DeoC 2-deoxyribose-5-p 89.9 18 0.00038 34.1 17.3 100 231-334 66-169 (203)
285 PTZ00170 D-ribulose-5-phosphat 89.9 4.8 0.0001 38.9 11.8 115 230-357 15-134 (228)
286 TIGR02321 Pphn_pyruv_hyd phosp 89.8 8.6 0.00019 38.7 13.9 126 197-335 58-201 (290)
287 TIGR02026 BchE magnesium-proto 89.7 12 0.00025 40.5 15.8 162 98-275 222-390 (497)
288 TIGR00284 dihydropteroate synt 89.7 13 0.00028 40.2 16.0 78 227-316 160-237 (499)
289 cd02801 DUS_like_FMN Dihydrour 89.6 10 0.00023 35.9 13.9 151 152-311 56-211 (231)
290 PRK06843 inosine 5-monophospha 89.6 3 6.6E-05 43.8 10.9 72 236-319 154-225 (404)
291 TIGR00007 phosphoribosylformim 89.6 11 0.00023 36.0 14.0 145 102-276 29-188 (230)
292 PRK13397 3-deoxy-7-phosphohept 89.6 9.9 0.00021 37.5 13.8 144 108-274 93-249 (250)
293 PRK00748 1-(5-phosphoribosyl)- 89.6 8.5 0.00018 36.7 13.3 148 101-277 30-190 (233)
294 COG0635 HemN Coproporphyrinoge 89.5 12 0.00025 39.6 15.3 148 98-254 67-224 (416)
295 cd01320 ADA Adenosine deaminas 89.4 19 0.00041 36.2 16.2 125 174-309 84-213 (325)
296 cd04724 Tryptophan_synthase_al 89.4 16 0.00035 35.5 15.2 172 167-357 18-206 (242)
297 PRK12677 xylose isomerase; Pro 89.3 11 0.00023 39.5 14.7 59 165-226 116-178 (384)
298 cd04735 OYE_like_4_FMN Old yel 89.3 7.9 0.00017 39.8 13.6 136 170-310 151-310 (353)
299 TIGR01304 IMP_DH_rel_2 IMP deh 89.3 2.2 4.7E-05 44.4 9.4 89 204-311 119-214 (369)
300 PRK09490 metH B12-dependent me 89.2 58 0.0013 39.2 25.2 211 98-334 157-424 (1229)
301 PRK13745 anaerobic sulfatase-m 89.2 21 0.00046 37.4 17.0 147 96-253 46-200 (412)
302 PTZ00372 endonuclease 4-like p 89.1 23 0.0005 37.5 16.9 91 198-293 247-351 (413)
303 PRK07259 dihydroorotate dehydr 89.0 6.9 0.00015 39.1 12.7 104 198-312 75-188 (301)
304 PRK08208 coproporphyrinogen II 89.0 12 0.00025 39.7 15.0 86 168-255 143-229 (430)
305 COG0329 DapA Dihydrodipicolina 89.0 3.6 7.7E-05 41.5 10.6 82 229-312 20-105 (299)
306 TIGR01211 ELP3 histone acetylt 89.0 39 0.00085 36.9 20.2 177 97-278 114-335 (522)
307 PRK10605 N-ethylmaleimide redu 89.0 13 0.00028 38.5 14.9 132 170-310 166-318 (362)
308 TIGR00222 panB 3-methyl-2-oxob 88.9 7.7 0.00017 38.5 12.5 143 103-277 24-195 (263)
309 PRK05283 deoxyribose-phosphate 88.9 24 0.00051 35.0 15.9 172 80-274 11-189 (257)
310 cd00953 KDG_aldolase KDG (2-ke 88.9 26 0.00057 34.7 21.9 188 97-334 16-213 (279)
311 PRK08227 autoinducer 2 aldolas 88.9 20 0.00044 35.6 15.5 120 164-312 99-225 (264)
312 PRK07565 dihydroorotate dehydr 88.8 7.8 0.00017 39.5 13.1 79 231-313 111-197 (334)
313 COG0535 Predicted Fe-S oxidore 88.8 15 0.00032 36.6 15.0 142 96-253 46-192 (347)
314 COG0821 gcpE 1-hydroxy-2-methy 88.8 13 0.00029 38.0 14.2 141 99-244 34-190 (361)
315 PRK00115 hemE uroporphyrinogen 88.6 21 0.00045 36.5 16.1 40 101-140 186-233 (346)
316 TIGR00612 ispG_gcpE 1-hydroxy- 88.6 31 0.00068 35.4 16.8 141 99-244 32-188 (346)
317 PRK07226 fructose-bisphosphate 88.6 11 0.00023 37.3 13.5 178 97-312 35-230 (267)
318 TIGR00343 pyridoxal 5'-phospha 88.6 3.8 8.2E-05 41.0 10.1 69 238-323 80-148 (287)
319 COG3623 SgaU Putative L-xylulo 88.6 3.6 7.8E-05 40.1 9.6 202 94-337 14-248 (287)
320 cd03315 MLE_like Muconate lact 88.6 25 0.00055 34.2 19.2 165 99-300 85-250 (265)
321 PRK08508 biotin synthase; Prov 88.5 1.9 4E-05 43.0 8.1 120 195-320 37-164 (279)
322 cd04739 DHOD_like Dihydroorota 88.5 8.7 0.00019 39.1 13.1 105 198-313 83-195 (325)
323 TIGR01740 pyrF orotidine 5'-ph 88.4 13 0.00029 35.2 13.7 173 99-310 9-193 (213)
324 cd04734 OYE_like_3_FMN Old yel 88.4 16 0.00034 37.6 15.0 85 170-254 148-249 (343)
325 cd02810 DHOD_DHPD_FMN Dihydroo 88.4 11 0.00025 37.1 13.7 79 231-313 108-196 (289)
326 TIGR01949 AroFGH_arch predicte 88.3 11 0.00023 37.0 13.2 192 80-312 20-226 (258)
327 PRK00112 tgt queuine tRNA-ribo 88.3 8.3 0.00018 40.1 12.9 96 221-324 183-279 (366)
328 PF13714 PEP_mutase: Phosphoen 88.2 7.4 0.00016 38.0 11.9 176 107-312 22-218 (238)
329 PF02679 ComA: (2R)-phospho-3- 88.2 2 4.3E-05 42.1 7.9 149 107-272 28-195 (244)
330 PRK14024 phosphoribosyl isomer 88.2 17 0.00036 35.3 14.4 190 102-331 33-237 (241)
331 PRK13396 3-deoxy-7-phosphohept 88.2 13 0.00028 38.5 14.1 111 152-275 210-337 (352)
332 PRK13111 trpA tryptophan synth 88.2 28 0.00061 34.3 17.1 151 167-336 30-198 (258)
333 PRK05904 coproporphyrinogen II 88.1 14 0.00031 38.0 14.6 91 161-253 97-189 (353)
334 PRK07094 biotin synthase; Prov 88.0 11 0.00024 37.9 13.6 46 197-246 70-115 (323)
335 cd04727 pdxS PdxS is a subunit 88.0 1.8 3.8E-05 43.2 7.4 70 237-323 77-146 (283)
336 PF07302 AroM: AroM protein; 88.0 9.6 0.00021 36.9 12.2 138 82-271 54-199 (221)
337 COG1244 Predicted Fe-S oxidore 87.9 23 0.0005 36.2 15.2 164 79-263 103-297 (358)
338 cd00405 PRAI Phosphoribosylant 87.7 5.1 0.00011 37.6 10.2 164 153-358 2-171 (203)
339 TIGR03471 HpnJ hopanoid biosyn 87.7 17 0.00037 38.8 15.3 159 98-275 227-390 (472)
340 PRK05581 ribulose-phosphate 3- 87.7 25 0.00053 33.0 15.1 174 97-310 12-195 (220)
341 PTZ00314 inosine-5'-monophosph 87.6 4.7 0.0001 43.6 11.0 70 237-315 243-312 (495)
342 PRK06801 hypothetical protein; 87.5 16 0.00035 36.7 14.0 96 206-312 6-103 (286)
343 PRK13523 NADPH dehydrogenase N 87.5 14 0.0003 37.9 13.9 131 170-310 149-302 (337)
344 PRK08673 3-deoxy-7-phosphohept 87.3 36 0.00079 35.0 16.7 113 152-275 202-328 (335)
345 cd06556 ICL_KPHMT Members of t 87.3 21 0.00046 34.9 14.4 133 106-271 24-189 (240)
346 TIGR02321 Pphn_pyruv_hyd phosp 87.2 26 0.00057 35.2 15.4 203 107-337 28-257 (290)
347 TIGR00736 nifR3_rel_arch TIM-b 87.2 25 0.00054 34.2 14.8 142 160-314 77-221 (231)
348 cd02932 OYE_YqiM_FMN Old yello 87.1 14 0.0003 37.7 13.7 132 170-310 161-317 (336)
349 TIGR00078 nadC nicotinate-nucl 87.1 12 0.00025 37.2 12.7 132 205-358 102-241 (265)
350 PRK08072 nicotinate-nucleotide 87.0 15 0.00032 36.8 13.4 131 206-358 113-251 (277)
351 TIGR01859 fruc_bis_ald_ fructo 87.0 7.9 0.00017 38.7 11.5 99 206-315 4-108 (282)
352 cd00945 Aldolase_Class_I Class 87.0 23 0.00051 32.1 16.5 96 233-334 64-167 (201)
353 TIGR03569 NeuB_NnaB N-acetylne 86.9 28 0.0006 35.7 15.6 95 208-314 124-224 (329)
354 PRK08207 coproporphyrinogen II 86.9 21 0.00046 38.6 15.5 85 168-254 271-356 (488)
355 PF01702 TGT: Queuine tRNA-rib 86.9 6.8 0.00015 37.9 10.8 89 229-324 63-152 (238)
356 PF03102 NeuB: NeuB family; I 86.8 13 0.00029 36.3 12.7 153 95-275 50-232 (241)
357 PLN02623 pyruvate kinase 86.8 55 0.0012 36.2 21.1 199 97-316 275-487 (581)
358 PLN02424 ketopantoate hydroxym 86.7 14 0.00029 37.9 13.0 152 96-277 37-217 (332)
359 PRK07360 FO synthase subunit 2 86.7 4.9 0.00011 41.7 10.3 130 228-362 88-241 (371)
360 PRK07428 nicotinate-nucleotide 86.7 9.9 0.00021 38.2 12.0 130 206-357 121-261 (288)
361 TIGR00737 nifR3_yhdG putative 86.7 23 0.00049 35.8 14.9 143 160-312 72-221 (319)
362 PRK00208 thiG thiazole synthas 86.6 5.9 0.00013 38.9 10.0 168 105-310 25-201 (250)
363 PRK09250 fructose-bisphosphate 86.5 33 0.00072 35.4 15.8 80 163-256 150-239 (348)
364 PF09370 TIM-br_sig_trns: TIM- 86.5 7.4 0.00016 38.6 10.7 129 107-253 28-176 (268)
365 PRK06852 aldolase; Validated 86.5 14 0.0003 37.5 12.9 184 97-311 55-263 (304)
366 TIGR03572 WbuZ glycosyl amidat 86.1 31 0.00067 32.9 14.9 146 101-276 30-196 (232)
367 cd03315 MLE_like Muconate lact 86.0 9.3 0.0002 37.3 11.4 101 96-225 138-238 (265)
368 cd04729 NanE N-acetylmannosami 85.9 32 0.00069 32.6 16.0 159 99-310 25-203 (219)
369 PRK00694 4-hydroxy-3-methylbut 85.9 60 0.0013 35.8 18.0 138 74-225 25-208 (606)
370 PRK09197 fructose-bisphosphate 85.8 47 0.001 34.4 19.9 194 97-312 28-278 (350)
371 PF01791 DeoC: DeoC/LacD famil 85.8 4.5 9.8E-05 39.0 8.9 190 98-310 15-225 (236)
372 PF04551 GcpE: GcpE protein; 85.8 27 0.00059 36.1 14.6 159 98-265 28-219 (359)
373 PRK12737 gatY tagatose-bisphos 85.7 8.6 0.00019 38.6 11.0 102 206-318 6-111 (284)
374 cd02803 OYE_like_FMN_family Ol 85.7 8.8 0.00019 38.6 11.3 80 235-316 142-251 (327)
375 PF04481 DUF561: Protein of un 85.7 21 0.00046 34.5 12.9 175 96-310 22-211 (242)
376 cd01299 Met_dep_hydrolase_A Me 85.6 4.5 9.7E-05 40.7 9.2 70 232-311 118-198 (342)
377 TIGR02990 ectoine_eutA ectoine 85.6 11 0.00024 36.8 11.5 90 168-277 111-206 (239)
378 PRK09875 putative hydrolase; P 85.4 43 0.00094 33.7 16.0 148 103-275 106-272 (292)
379 PRK07379 coproporphyrinogen II 85.2 12 0.00027 39.1 12.4 130 114-253 66-201 (400)
380 KOG3111 D-ribulose-5-phosphate 85.1 7.9 0.00017 36.7 9.6 112 204-335 99-215 (224)
381 PRK02048 4-hydroxy-3-methylbut 85.0 62 0.0013 35.8 17.6 159 76-248 23-228 (611)
382 cd07937 DRE_TIM_PC_TC_5S Pyruv 84.9 31 0.00068 34.1 14.6 80 98-185 88-171 (275)
383 TIGR00222 panB 3-methyl-2-oxob 84.9 13 0.00028 37.0 11.6 97 173-287 32-135 (263)
384 TIGR01464 hemE uroporphyrinoge 84.9 9.9 0.00022 38.6 11.3 84 235-334 181-274 (338)
385 TIGR03821 AblA_like_1 lysine-2 84.7 49 0.0011 33.7 17.5 164 97-279 124-303 (321)
386 cd04747 OYE_like_5_FMN Old yel 84.7 23 0.0005 36.8 13.9 135 170-310 151-325 (361)
387 TIGR03849 arch_ComA phosphosul 84.7 7.8 0.00017 37.8 9.8 148 106-271 14-182 (237)
388 TIGR03700 mena_SCO4494 putativ 84.5 8.1 0.00018 39.7 10.6 78 229-311 77-165 (351)
389 TIGR03234 OH-pyruv-isom hydrox 84.5 15 0.00033 35.3 12.0 112 163-291 14-146 (254)
390 PRK07565 dihydroorotate dehydr 84.5 27 0.00059 35.5 14.3 161 98-276 111-290 (334)
391 PRK07896 nicotinate-nucleotide 84.5 15 0.00033 36.9 12.1 130 206-358 125-265 (289)
392 PRK12738 kbaY tagatose-bisphos 84.5 13 0.00027 37.5 11.5 101 206-317 6-110 (286)
393 PRK05283 deoxyribose-phosphate 84.4 45 0.00098 33.0 16.1 159 97-272 79-246 (257)
394 TIGR01302 IMP_dehydrog inosine 84.3 6 0.00013 42.1 9.8 71 235-314 224-294 (450)
395 PRK05848 nicotinate-nucleotide 84.3 16 0.00036 36.4 12.2 132 205-358 106-248 (273)
396 COG0167 PyrD Dihydroorotate de 84.3 32 0.00069 35.0 14.4 166 97-276 105-292 (310)
397 PRK01008 queuine tRNA-ribosylt 84.2 18 0.00039 37.7 12.9 95 221-324 199-294 (372)
398 PF04273 DUF442: Putative phos 84.2 5.9 0.00013 34.0 7.8 78 210-292 20-97 (110)
399 COG0274 DeoC Deoxyribose-phosp 84.0 38 0.00082 32.9 13.9 196 80-310 9-209 (228)
400 PRK06294 coproporphyrinogen II 84.0 29 0.00064 35.9 14.5 91 161-253 97-189 (370)
401 cd04741 DHOD_1A_like Dihydroor 83.9 40 0.00086 33.8 14.9 163 100-275 102-293 (294)
402 PLN02495 oxidoreductase, actin 83.8 50 0.0011 34.6 16.0 165 98-276 124-321 (385)
403 PRK05265 pyridoxine 5'-phospha 83.8 27 0.00059 34.1 13.0 169 102-301 25-200 (239)
404 TIGR00559 pdxJ pyridoxine 5'-p 83.8 45 0.00098 32.6 15.4 180 86-301 11-198 (237)
405 cd00958 DhnA Class I fructose- 83.7 8.4 0.00018 36.9 9.7 83 230-313 72-163 (235)
406 COG0502 BioB Biotin synthase a 83.7 3.1 6.7E-05 42.6 6.9 114 195-319 82-205 (335)
407 cd00947 TBP_aldolase_IIB Tagat 83.7 11 0.00024 37.6 10.7 143 207-360 2-195 (276)
408 PRK05567 inosine 5'-monophosph 83.6 7 0.00015 42.1 10.0 69 237-314 230-298 (486)
409 PRK11613 folP dihydropteroate 83.6 10 0.00022 38.0 10.5 78 227-313 30-117 (282)
410 PLN02389 biotin synthase 83.3 9.8 0.00021 39.7 10.6 112 197-319 116-239 (379)
411 cd04722 TIM_phosphate_binding 83.2 33 0.00072 30.6 16.9 75 235-316 72-146 (200)
412 cd04733 OYE_like_2_FMN Old yel 83.2 26 0.00056 35.7 13.5 112 199-315 77-258 (338)
413 COG0036 Rpe Pentose-5-phosphat 82.8 26 0.00057 33.9 12.4 164 103-310 18-194 (220)
414 PRK09195 gatY tagatose-bisphos 82.8 14 0.00031 37.0 11.1 101 206-317 6-110 (284)
415 cd02940 DHPD_FMN Dihydropyrimi 82.8 15 0.00032 36.9 11.4 159 98-270 110-297 (299)
416 PF04481 DUF561: Protein of un 82.7 48 0.001 32.2 13.9 127 152-312 16-151 (242)
417 PRK12581 oxaloacetate decarbox 82.7 30 0.00065 37.2 14.1 260 158-436 30-325 (468)
418 cd06557 KPHMT-like Ketopantoat 82.7 20 0.00044 35.3 12.0 77 197-287 55-133 (254)
419 PLN02433 uroporphyrinogen deca 82.7 7.5 0.00016 39.8 9.4 85 235-334 180-273 (345)
420 PF04476 DUF556: Protein of un 82.5 51 0.0011 32.2 16.1 149 107-275 13-179 (235)
421 cd04739 DHOD_like Dihydroorota 82.4 29 0.00063 35.3 13.5 165 98-276 109-288 (325)
422 PRK08185 hypothetical protein; 82.2 12 0.00026 37.5 10.4 99 207-316 2-103 (283)
423 PRK09358 adenosine deaminase; 82.2 60 0.0013 32.8 17.3 144 175-337 93-243 (340)
424 PRK05718 keto-hydroxyglutarate 82.2 7.7 0.00017 37.2 8.6 86 209-312 8-93 (212)
425 PRK13210 putative L-xylulose 5 82.1 43 0.00093 32.6 14.2 123 164-292 17-157 (284)
426 TIGR02493 PFLA pyruvate format 82.1 47 0.001 31.5 16.1 138 97-253 45-194 (235)
427 TIGR01858 tag_bisphos_ald clas 82.1 17 0.00038 36.4 11.4 100 206-316 4-107 (282)
428 cd00953 KDG_aldolase KDG (2-ke 82.1 14 0.0003 36.7 10.7 82 229-314 15-99 (279)
429 PRK12857 fructose-1,6-bisphosp 82.1 18 0.00039 36.3 11.5 102 206-318 6-111 (284)
430 COG1830 FbaB DhnA-type fructos 82.0 31 0.00067 34.3 12.8 102 198-310 124-234 (265)
431 PRK05985 cytosine deaminase; P 81.9 67 0.0014 33.1 17.5 102 204-313 191-295 (391)
432 cd03174 DRE_TIM_metallolyase D 81.9 29 0.00063 33.4 12.8 22 104-125 77-98 (265)
433 PRK05742 nicotinate-nucleotide 81.8 22 0.00048 35.6 12.0 129 206-358 115-252 (277)
434 PRK06252 methylcobalamin:coenz 81.6 7 0.00015 39.6 8.7 84 235-333 181-272 (339)
435 TIGR01302 IMP_dehydrog inosine 81.6 18 0.00039 38.5 12.1 133 101-255 223-357 (450)
436 PLN02433 uroporphyrinogen deca 81.4 59 0.0013 33.2 15.4 39 102-140 180-226 (345)
437 TIGR00449 tgt_general tRNA-gua 81.4 25 0.00055 36.5 12.7 95 221-324 178-274 (367)
438 cd04730 NPD_like 2-Nitropropan 81.4 25 0.00054 33.4 12.0 112 165-313 69-185 (236)
439 TIGR02666 moaA molybdenum cofa 81.2 31 0.00068 34.9 13.2 123 197-337 43-182 (334)
440 TIGR00430 Q_tRNA_tgt tRNA-guan 81.2 30 0.00065 36.0 13.2 95 221-324 179-275 (368)
441 TIGR00262 trpA tryptophan synt 81.1 59 0.0013 32.0 18.8 171 167-357 28-217 (256)
442 PRK08599 coproporphyrinogen II 81.1 12 0.00026 38.7 10.3 84 168-253 102-186 (377)
443 PRK00311 panB 3-methyl-2-oxobu 81.0 21 0.00045 35.5 11.4 90 173-275 32-129 (264)
444 PRK14340 (dimethylallyl)adenos 80.9 62 0.0013 34.5 15.8 142 96-252 176-333 (445)
445 PRK09057 coproporphyrinogen II 80.8 54 0.0012 34.0 15.0 131 114-255 55-191 (380)
446 PTZ00314 inosine-5'-monophosph 80.8 42 0.00091 36.3 14.6 133 99-256 239-375 (495)
447 PRK04180 pyridoxal biosynthesi 80.8 8.1 0.00018 38.8 8.4 62 238-313 87-148 (293)
448 PRK06256 biotin synthase; Vali 80.8 21 0.00044 36.2 11.7 16 423-438 309-324 (336)
449 PF02548 Pantoate_transf: Keto 80.6 8.5 0.00018 38.1 8.5 139 105-271 27-194 (261)
450 cd00717 URO-D Uroporphyrinogen 80.4 9.8 0.00021 38.5 9.3 71 234-312 177-257 (335)
451 PRK15063 isocitrate lyase; Pro 80.4 85 0.0018 33.4 19.2 197 164-382 162-403 (428)
452 cd02931 ER_like_FMN Enoate red 80.3 58 0.0012 34.0 15.1 132 170-310 157-332 (382)
453 PRK11858 aksA trans-homoaconit 80.3 42 0.00091 34.9 14.0 17 107-123 81-97 (378)
454 PLN02951 Molybderin biosynthes 80.3 31 0.00066 35.9 13.0 78 197-288 90-169 (373)
455 PRK13758 anaerobic sulfatase-m 80.2 73 0.0016 32.6 15.7 98 172-274 112-223 (370)
456 cd03309 CmuC_like CmuC_like. P 80.2 8.9 0.00019 39.1 8.8 90 234-334 155-255 (321)
457 TIGR01212 radical SAM protein, 80.1 69 0.0015 32.2 15.4 82 169-253 129-212 (302)
458 COG1453 Predicted oxidoreducta 80.0 20 0.00043 37.3 11.0 111 97-218 30-144 (391)
459 cd03307 Mta_CmuA_like MtaA_Cmu 79.8 5.4 0.00012 40.3 7.1 84 235-333 172-263 (326)
460 PRK09997 hydroxypyruvate isome 79.8 32 0.00069 33.3 12.3 110 164-291 16-147 (258)
461 PF01116 F_bP_aldolase: Fructo 79.7 8.1 0.00018 38.8 8.2 105 204-319 3-111 (287)
462 cd00381 IMPDH IMPDH: The catal 79.5 12 0.00025 38.3 9.4 70 236-314 95-164 (325)
463 PRK04302 triosephosphate isome 79.5 47 0.001 31.7 13.1 114 168-310 77-199 (223)
464 PRK13306 ulaD 3-keto-L-gulonat 79.4 28 0.0006 33.3 11.5 110 98-237 13-123 (216)
465 PRK00115 hemE uroporphyrinogen 79.3 5.1 0.00011 41.0 6.8 85 234-334 186-280 (346)
466 cd00739 DHPS DHPS subgroup of 79.2 18 0.00038 35.7 10.3 78 227-313 16-103 (257)
467 PRK05286 dihydroorotate dehydr 79.2 80 0.0017 32.4 18.2 27 231-257 222-248 (344)
468 PRK02227 hypothetical protein; 79.1 67 0.0015 31.5 18.0 154 107-275 13-179 (238)
469 PLN02591 tryptophan synthase 79.1 69 0.0015 31.5 17.9 149 168-335 21-186 (250)
470 COG0299 PurN Folate-dependent 78.9 18 0.0004 34.3 9.7 91 208-309 41-131 (200)
471 PF00809 Pterin_bind: Pterin b 78.9 60 0.0013 30.8 14.5 151 95-273 13-189 (210)
472 PF09587 PGA_cap: Bacterial ca 78.9 6.7 0.00014 38.1 7.2 47 203-251 170-220 (250)
473 COG0413 PanB Ketopantoate hydr 78.8 48 0.001 32.9 12.8 147 98-272 19-194 (268)
474 PRK08883 ribulose-phosphate 3- 78.8 19 0.00041 34.7 10.1 164 104-310 15-192 (220)
475 TIGR02351 thiH thiazole biosyn 78.6 86 0.0019 32.4 15.7 110 197-319 103-228 (366)
476 TIGR01520 FruBisAldo_II_A fruc 78.6 88 0.0019 32.5 20.6 201 89-311 24-285 (357)
477 PRK09722 allulose-6-phosphate 78.5 18 0.00039 35.1 9.9 121 168-311 74-195 (229)
478 PRK09016 quinolinate phosphori 78.5 29 0.00062 35.1 11.6 130 206-358 134-271 (296)
479 PLN02334 ribulose-phosphate 3- 78.3 65 0.0014 30.8 18.2 167 102-310 21-199 (229)
480 cd00308 enolase_like Enolase-s 78.1 31 0.00068 32.8 11.5 101 97-226 104-204 (229)
481 PRK12330 oxaloacetate decarbox 78.1 28 0.0006 37.8 12.1 164 158-335 22-195 (499)
482 PRK06806 fructose-bisphosphate 78.1 33 0.00072 34.3 11.9 95 206-311 6-102 (281)
483 cd00003 PNPsynthase Pyridoxine 77.8 73 0.0016 31.1 14.6 179 86-300 11-197 (234)
484 cd07944 DRE_TIM_HOA_like 4-hyd 77.8 76 0.0016 31.3 14.5 57 207-264 141-201 (266)
485 PF03740 PdxJ: Pyridoxal phosp 77.8 16 0.00034 35.8 9.2 127 102-253 23-151 (239)
486 TIGR03822 AblA_like_2 lysine-2 77.7 36 0.00079 34.5 12.4 127 204-337 122-258 (321)
487 PRK08255 salicylyl-CoA 5-hydro 77.7 46 0.00099 38.0 14.4 132 170-310 558-714 (765)
488 PRK08649 inosine 5-monophospha 77.5 9.8 0.00021 39.6 8.2 95 204-320 118-219 (368)
489 TIGR01463 mtaA_cmuA methyltran 77.5 9.7 0.00021 38.6 8.2 72 235-311 181-260 (340)
490 cd02930 DCR_FMN 2,4-dienoyl-Co 77.5 57 0.0012 33.4 13.9 113 199-315 72-246 (353)
491 cd00956 Transaldolase_FSA Tran 77.4 61 0.0013 30.9 13.1 125 97-254 60-185 (211)
492 PRK08385 nicotinate-nucleotide 77.4 49 0.0011 33.1 12.9 132 205-358 106-250 (278)
493 COG1879 RbsB ABC-type sugar tr 77.3 79 0.0017 31.3 18.2 206 95-318 44-253 (322)
494 TIGR02495 NrdG2 anaerobic ribo 77.2 59 0.0013 29.8 15.2 134 97-247 46-183 (191)
495 TIGR01430 aden_deam adenosine 77.1 72 0.0016 32.0 14.4 123 174-309 83-212 (324)
496 cd01571 NAPRTase_B Nicotinate 76.7 89 0.0019 31.6 15.9 124 229-358 118-264 (302)
497 cd07943 DRE_TIM_HOA 4-hydroxy- 76.6 60 0.0013 31.8 13.2 57 208-265 145-204 (263)
498 PRK09613 thiH thiamine biosynt 76.5 61 0.0013 34.9 14.1 117 196-319 114-246 (469)
499 PLN02925 4-hydroxy-3-methylbut 76.3 1.4E+02 0.0031 33.7 17.2 146 97-249 106-298 (733)
500 PF00682 HMGL-like: HMGL-like 76.3 36 0.00078 32.4 11.4 28 98-125 64-91 (237)
No 1
>PLN02321 2-isopropylmalate synthase
Probab=100.00 E-value=3e-98 Score=802.25 Aligned_cols=392 Identities=82% Similarity=1.201 Sum_probs=365.9
Q ss_pred cccCCCCCCCCCCccccCCCCCCCCCCCCCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh
Q 013498 48 SCSLQKPPPSLYPRITATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK 127 (442)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~ 127 (442)
.|+....++......+++||+|+|+.|++|++|+|+|||||||+|+++..|+.++|++|++.|+++||+.||+|||.++|
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp 134 (632)
T PLN02321 55 ASSALAASPSRPQVARRPRPEYIPNRIDDPNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP 134 (632)
T ss_pred hhhccCCCcccccccccCCcccccccCCCCCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc
Confidence 34444455666666778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHH
Q 013498 128 EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIAR 207 (442)
Q Consensus 128 ~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~ 207 (442)
.|+++++.|++.+++.+..+ .+++.|++|+|++.+||+++++++..++.++|++|+++||+|+++++++|++|+++++.
T Consensus 135 ~D~e~vr~i~~~~~~~v~~~-~~v~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~ 213 (632)
T PLN02321 135 DDLEAVKTIAKEVGNEVDED-GYVPVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIAR 213 (632)
T ss_pred cHHHHHHHHHHhcccCCCcc-ccceeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHH
Confidence 99999999988754443333 66789999999999999999999887777899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 013498 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (442)
Q Consensus 208 ~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H 287 (442)
++|++||++|+..|.|++||++|+|++|+.++++++.++|+++|+||||+|+++|++++++|+.+++++|+.++++|++|
T Consensus 214 ~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH 293 (632)
T PLN02321 214 DMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTH 293 (632)
T ss_pred HHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 99999999998569999999999999999999999999999999999999999999999999999999986556889999
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCC
Q 013498 288 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLH 367 (442)
Q Consensus 288 ~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~ 367 (442)
||||+|||+||+++|+++||++||+|++|||||+||++||+|+++|+.++...++|+.+++|+++|.++++++++++|++
T Consensus 294 ~HND~GlAvANslaAv~AGA~~Vd~TinGlGERaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~ 373 (632)
T PLN02321 294 CQNDLGLSTANTLAGAHAGARQVEVTINGIGERAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQ 373 (632)
T ss_pred eCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999999999999876433468999999999999999999999999
Q ss_pred CCCCCccccchhhhhccCccccccccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 368 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 368 i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
+++|+||||+|+|+|+|||||||++|||.+||||+||+||++|+++.+|+||||||+++|+++|+++||++++
T Consensus 374 v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~Pe~VG~~r~~~~~i~lgk~SGr~~v~~~L~~lG~~l~~ 446 (632)
T PLN02321 374 VQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLFRGNDAGIVLGKLSGRHALKSRLKELGYELDD 446 (632)
T ss_pred CCCCcccccccceehhcCccHHHHccCcccccccCHHHhCCcccccceecccccccHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999999999988777889999999999999999999999874
No 2
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=100.00 E-value=1.9e-93 Score=749.79 Aligned_cols=377 Identities=68% Similarity=1.110 Sum_probs=350.9
Q ss_pred cCCCCCCCCCCCCCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhccc
Q 013498 64 ATRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA 143 (442)
Q Consensus 64 ~~~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~ 143 (442)
.+-|+|+|+..+++++|+|+|||||||+|++|+.|+.++|++|++.|+++||++||+|||+++++|+++++.+++..++.
T Consensus 69 ~~~~~~~~~~~~~~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~ 148 (503)
T PLN03228 69 ERWPEYIPNKLPDKNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNE 148 (503)
T ss_pred hcccccCCcccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998765331
Q ss_pred ccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013498 144 VDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 223 (442)
Q Consensus 144 ~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f 223 (442)
.....++.+++++|+|+.++||++++++++.++.++|++++++||+|+++++|+|++|+++++.++|++||++|+..|.|
T Consensus 149 ~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f 228 (503)
T PLN03228 149 VDEETGYVPVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQF 228 (503)
T ss_pred cccccccceEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEe
Confidence 11112467899999999999999999998888999999999999999999999999999999999999999999855899
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
++||++|+|++|+.++++.+.++|+++|+||||+|.++|++++++|+.+++.+|+.++++|++|||||+|||+||+++|+
T Consensus 229 ~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi 308 (503)
T PLN03228 229 GCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGI 308 (503)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998865568899999999999999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhc
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHE 383 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~ 383 (442)
++||++||+|++|||||+||++||+|+++|+..+....+|+++++|++.|.++++++++++|+++++++||||.|+|+||
T Consensus 309 ~aGa~~Vd~Tv~GiGERaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~he 388 (503)
T PLN03228 309 CAGARQVEVTINGIGERSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHE 388 (503)
T ss_pred HhCCCEEEEeccccccccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHhc
Confidence 99999999999999999999999999999988653223488999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 384 SGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 384 sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|||||||++|||.+||||+||+||+.|..+.+++||||||+++|+++|+++|+++++
T Consensus 389 SGIH~dgilK~p~tYe~~~Pe~vG~~~~~~~~i~lgk~SG~~av~~~l~~lG~~~~~ 445 (503)
T PLN03228 389 SGIHQDGILKNRSTYEILSPEDIGIVKSQNSGIVLGKLSGRHAVKDRLKELGYELDD 445 (503)
T ss_pred cchhHHHHhCCcccccCCCHHHhCCcccccceeecchHhhHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999755334579999999999999999999999874
No 3
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=100.00 E-value=1.4e-89 Score=724.82 Aligned_cols=347 Identities=61% Similarity=0.916 Sum_probs=329.1
Q ss_pred ceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec
Q 013498 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~ 158 (442)
+|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||++++.|+++++.+++... .+.+++|+
T Consensus 1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~---------~~~i~al~ 71 (494)
T TIGR00973 1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIARTVK---------NPRVCGLA 71 (494)
T ss_pred CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCC---------CCEEEEEc
Confidence 489999999999999999999999999999999999999999999999999999999986532 25799999
Q ss_pred ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHH
Q 013498 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 159 r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~ 238 (442)
|++++||+++++++..++.++|++|+++||+|+++++++|++++++++.++++++|++|. .|.|++||++|+|++|+.+
T Consensus 72 r~~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~Ed~~r~d~~~l~~ 150 (494)
T TIGR00973 72 RCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD-DVEFSCEDAGRTEIPFLAR 150 (494)
T ss_pred CCCHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCCCCHHHHHH
Confidence 999999999999988889999999999999999999999999999999999999999998 4999999999999999999
Q ss_pred HHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccc
Q 013498 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlG 318 (442)
+++.+.++|+++|+||||+|+++|++++++|+.+++++|..++++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 151 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlG 230 (494)
T TIGR00973 151 IVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG 230 (494)
T ss_pred HHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeeccc
Confidence 99999999999999999999999999999999999999865568899999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCC
Q 013498 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 398 (442)
Q Consensus 319 eraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Y 398 (442)
||+||++||+|+++|+.+.. .+|+++++|++.|.++++++++++|+++|+++||||+|+|+|+|||||||++|||.+|
T Consensus 231 ERaGNa~le~vv~~L~~~~~--~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGiH~dgi~k~~~~Y 308 (494)
T TIGR00973 231 ERAGNAALEEVVMALKVRKD--FLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETY 308 (494)
T ss_pred ccccCccHHHHHHHHHHhcc--cCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccc
Confidence 99999999999999986521 2488999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 399 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 399 e~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|||+||+||+++. ++++|||||+++|+++|+++|+++++
T Consensus 309 e~~~Pe~vG~~~~---~i~lg~~SG~~~i~~~l~~~g~~l~~ 347 (494)
T TIGR00973 309 EIMSPEDIGLTAE---QLVLGKHSGRHAFKDRLEELGFKLDD 347 (494)
T ss_pred cCCCHHHcCCcce---eEEecccccHHHHHHHHHHhCCCCCH
Confidence 9999999997543 59999999999999999999999864
No 4
>PRK00915 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=1.8e-89 Score=727.65 Aligned_cols=349 Identities=60% Similarity=0.901 Sum_probs=331.0
Q ss_pred CCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee
Q 013498 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
|++|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||.+++.|+++++.+++... .+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~---------~~~i~a 72 (513)
T PRK00915 2 MDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIARTVK---------NSTVCG 72 (513)
T ss_pred CCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCC---------CCEEEE
Confidence 46799999999999999999999999999999999999999999999999999999999987532 257899
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
|+|++.+||++++++++.+|.++|++|+++||+|++.++++|++|+++++.+++++||++|.. |.|++||++|+|++|+
T Consensus 73 ~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~f~~ed~~r~d~~~l 151 (513)
T PRK00915 73 LARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDD-VEFSAEDATRTDLDFL 151 (513)
T ss_pred EccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeCCCCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999985 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G 316 (442)
.++++.+.++|+++|+||||+|.++|++++++|+.+++++|+.++++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~G 231 (513)
T PRK00915 152 CRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTING 231 (513)
T ss_pred HHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeec
Confidence 99999999999999999999999999999999999999987544589999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCC
Q 013498 317 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 396 (442)
Q Consensus 317 lGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~ 396 (442)
||||+||++||+|+++|+.+.. .+|+++++|+++|.++++++++++|+++|+++||||+|+|+|+|||||||++|||.
T Consensus 232 lGERaGNa~lE~vv~~L~~~~~--~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~ 309 (513)
T PRK00915 232 IGERAGNAALEEVVMALKTRKD--IYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRE 309 (513)
T ss_pred ccccccCccHHHHHHHHHhhhc--ccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccchhHHHHcCCcc
Confidence 9999999999999999987532 23889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 397 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 397 ~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
+||||+||+||+++. +|+||+|||+++|+++|+++|+++++
T Consensus 310 ~Ye~~~Pe~vG~~~~---~i~lg~~SG~~~v~~~l~~~g~~~~~ 350 (513)
T PRK00915 310 TYEIMTPESVGLKAN---RLVLGKHSGRHAFKHRLEELGYKLSD 350 (513)
T ss_pred cccccCHHHcCCcce---EEEeccccCHHHHHHHHHHhCCCCCH
Confidence 999999999999821 59999999999999999999999864
No 5
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-89 Score=686.74 Aligned_cols=357 Identities=65% Similarity=0.988 Sum_probs=341.9
Q ss_pred CCCCCCCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCc
Q 013498 71 PNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY 150 (442)
Q Consensus 71 ~~~~~~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l 150 (442)
|+..++++.|+++|+|||||+|++|..|++++|++|+++|+++|||+||+|||.+++++++.++.+++.. ++
T Consensus 49 ~~~l~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe~~~~~~~~i~k~~--------g~ 120 (560)
T KOG2367|consen 49 PNDLSDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASEQDFEDCKTIAKTL--------GY 120 (560)
T ss_pred CccccCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCcchHHHHHHHHHhC--------CC
Confidence 6678889999999999999999999999999999999999999999999999999999999999999863 46
Q ss_pred cceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC
Q 013498 151 VPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR 230 (442)
Q Consensus 151 ~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr 230 (442)
.+.|+++.||++.||+++||++++++.++|++|+++||+|+++++++|++|+++.+.++++++|++|+..++|++||.+|
T Consensus 121 ~~~I~~l~rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r 200 (560)
T KOG2367|consen 121 VPVICTLIRCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR 200 (560)
T ss_pred CceEEEeeccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999997679999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
++.+|++++++++.++|+.++.|+||||+.+|.++++||+.++.++|+++++-|+.|||||+|+|+||++.++.|||++|
T Consensus 201 se~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~V 280 (560)
T KOG2367|consen 201 SELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQV 280 (560)
T ss_pred CcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccc
Q 013498 311 EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDG 390 (442)
Q Consensus 311 d~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg 390 (442)
|+|++|+|||+||++||+|+|+|..+|.+. +...+++..|.++.++++++.++++|+++||+|.++|+|+|||||||
T Consensus 281 E~~i~GiGERtGn~~L~~v~m~my~~g~~~---vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGiHqda 357 (560)
T KOG2367|consen 281 EVTINGIGERTGNAPLEEVVMAMYCRGPDY---VSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGIHQDA 357 (560)
T ss_pred EEEeeccccccCCCCHHHHHHHheecCchh---cCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccccHHH
Confidence 999999999999999999999999987543 45667777777888899999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 391 MLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 391 ~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|+|+|.+|||++|++||++| +..|+++++|||++++++|+++|+++++
T Consensus 358 Ilk~r~tYeiLdPeDiG~~~--~a~i~~n~lSG~~avk~rl~~Lgl~L~d 405 (560)
T KOG2367|consen 358 ILKNRSTYEILDPEDIGMER--EAGIVLNKLSGRHAVKDRLKQLGLDLPD 405 (560)
T ss_pred HhcCCCCcccCChHHcCcce--eeeEEeccccchhHHHHHHHHcCCCCCH
Confidence 99999999999999999988 4689999999999999999999999875
No 6
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=100.00 E-value=1.1e-88 Score=698.07 Aligned_cols=337 Identities=49% Similarity=0.733 Sum_probs=322.1
Q ss_pred CCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee
Q 013498 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
|++|+|+|||||||+|++++.|+.++|++|++.|+++||+.||+|||.++++|++.++.+.+.. +.+.+++
T Consensus 2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~---------~~~~i~~ 72 (378)
T PRK11858 2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLG---------LNASILA 72 (378)
T ss_pred CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcC---------CCeEEEE
Confidence 5679999999999999999999999999999999999999999999999999999999998742 2357899
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
|+|++.+||++++++ |+++|++++++||.|+++++|+|++++++++.+++++|++.|+. |+|++||++|+|++|+
T Consensus 73 ~~r~~~~di~~a~~~----g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~-v~~~~ed~~r~~~~~l 147 (378)
T PRK11858 73 LNRAVKSDIDASIDC----GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLY-VSFSAEDASRTDLDFL 147 (378)
T ss_pred EcccCHHHHHHHHhC----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEeccCCCCCHHHH
Confidence 999999999999875 89999999999999999999999999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G 316 (442)
.++++.+.++|+++|+||||+|.++|++++++|+.+++.++ ++|++|||||+|||+||+++|+++||++||+|++|
T Consensus 148 ~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~G 223 (378)
T PRK11858 148 IEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVD----IPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNG 223 (378)
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeecc
Confidence 99999999999999999999999999999999999999882 78999999999999999999999999999999999
Q ss_pred cccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCC
Q 013498 317 IGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKG 396 (442)
Q Consensus 317 lGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~ 396 (442)
||||+||++||+|+++|+.+ +|+++++|+++|.++++++++++|+++|+++||||.|+|+|+||||+||++|||.
T Consensus 224 lGeraGNa~lE~vv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~ 298 (378)
T PRK11858 224 LGERAGNAALEEVVMALKYL-----YGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPL 298 (378)
T ss_pred ccccccCccHHHHHHHHHHH-----hCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHHHhCCcc
Confidence 99999999999999999854 3788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 397 TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 397 ~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
+||||+||+||++|. ++||||||+++|+++|+++|+++++
T Consensus 299 ~Ye~~~P~~vG~~~~----~~~g~~SG~~~v~~~l~~~g~~~~~ 338 (378)
T PRK11858 299 TYEPFLPEEVGLERR----IVLGKHSGRHALKNKLKEYGIELSR 338 (378)
T ss_pred cccccCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCH
Confidence 999999999999884 9999999999999999999999874
No 7
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=100.00 E-value=8.6e-88 Score=688.91 Aligned_cols=334 Identities=41% Similarity=0.587 Sum_probs=319.2
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r 159 (442)
|+|+|||||||+|++++.|+.++|++|++.|+++||+.||+|||.+++.|++.++.+.+..++ +.+++|+|
T Consensus 2 v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~---------~~i~~~~r 72 (365)
T TIGR02660 2 VIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLP---------ARLMAWCR 72 (365)
T ss_pred cEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCC---------cEEEEEcC
Confidence 789999999999999999999999999999999999999999999999999999999875322 47899999
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
++.+||+.++++ |++.|++++++||.|+++++++|++++++++.++|++||++|+. |+|++||++|++++|+.++
T Consensus 73 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~r~~~~~l~~~ 147 (365)
T TIGR02660 73 ARDADIEAAARC----GVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF-VSVGGEDASRADPDFLVEL 147 (365)
T ss_pred CCHHHHHHHHcC----CcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCCCCCHHHHHHH
Confidence 999999998875 89999999999999999999999999999999999999999985 9999999999999999999
Q ss_pred HHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 240 ~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
++++.++|+++|+||||+|.++|++++++|+.++++++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 148 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe 223 (365)
T TIGR02660 148 AEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD----LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE 223 (365)
T ss_pred HHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999873 78999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCCC
Q 013498 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 399 (442)
Q Consensus 320 raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Ye 399 (442)
|+||++||+|+++|+.. +|+++++|+++|.++++++++++|+++++++|+||+|+|+|+|||||||++|||.+||
T Consensus 224 raGN~~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye 298 (365)
T TIGR02660 224 RAGNAALEEVAMALKRL-----LGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYE 298 (365)
T ss_pred ccccCCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCC
Confidence 99999999999999543 3788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 400 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 400 ~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
||+|++||++| +++||+|||+++|+++|+++|+++++
T Consensus 299 ~~~P~~vG~~~----~~~i~~~SG~~~i~~~l~~~g~~~~~ 335 (365)
T TIGR02660 299 PFDPELVGRSR----RIVIGKHSGRAALINALAQLGIPLSE 335 (365)
T ss_pred CcCHHHcCCee----EEEeEchhhHHHHHHHHHHcCCCCCH
Confidence 99999999988 49999999999999999999999874
No 8
>PRK09389 (R)-citramalate synthase; Provisional
Probab=100.00 E-value=1e-87 Score=709.18 Aligned_cols=335 Identities=50% Similarity=0.706 Sum_probs=320.5
Q ss_pred ceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec
Q 013498 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~ 158 (442)
+|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||.++++|+++++.+.+.. +.+.+++|+
T Consensus 2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~---------~~~~i~a~~ 72 (488)
T PRK09389 2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEG---------LNAEICSFA 72 (488)
T ss_pred ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcC---------CCcEEEeec
Confidence 48999999999999999999999999999999999999999999999999999999998752 235899999
Q ss_pred ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHH
Q 013498 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 159 r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~ 238 (442)
|+..+||++++++ |.+.|++|+++||+|+++++++|++|+++++.+++++|+++|+. |+|++||++|+|++|+.+
T Consensus 73 r~~~~di~~a~~~----g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~-v~~~~ed~~r~~~~~l~~ 147 (488)
T PRK09389 73 RAVKVDIDAALEC----DVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLI-VELSGEDASRADLDFLKE 147 (488)
T ss_pred ccCHHHHHHHHhC----CcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCE-EEEEEeeCCCCCHHHHHH
Confidence 9999999998875 88999999999999999999999999999999999999999984 999999999999999999
Q ss_pred HHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccc
Q 013498 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlG 318 (442)
+++.+.++|+++|+||||+|.++|.+++++++.+++..+ ++|++|||||+|||+||+++|+++||++||+|++|||
T Consensus 148 ~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~----v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiG 223 (488)
T PRK09389 148 LYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK----GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIG 223 (488)
T ss_pred HHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC----CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccccc
Confidence 999999999999999999999999999999999998764 7899999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCC
Q 013498 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTY 398 (442)
Q Consensus 319 eraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Y 398 (442)
||+||++||+|+++|+.. +|+++++|+++|.++++++++++|+++|+++||||+|+|+|+|||||||++|||.+|
T Consensus 224 ERaGNa~lE~lv~~L~~~-----~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Y 298 (488)
T PRK09389 224 ERAGNASLEEVVMALKHL-----YDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETY 298 (488)
T ss_pred ccccCccHHHHHHHHHhh-----cCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccC
Confidence 999999999999999753 478899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 399 EIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 399 e~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|||+|++||++|. ++||+|||+++|+++|+++|+++++
T Consensus 299 e~~~P~~vG~~~~----~~lg~~SG~~~v~~~l~~~g~~~~~ 336 (488)
T PRK09389 299 EPITPETVGRERR----IVLGKHAGRAALKAALKEMGIEVSD 336 (488)
T ss_pred CCCCHHHcCCccc----ccccccccHHHHHHHHHHcCCCCCH
Confidence 9999999999874 9999999999999999999999874
No 9
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=100.00 E-value=2.7e-87 Score=710.53 Aligned_cols=341 Identities=28% Similarity=0.419 Sum_probs=321.3
Q ss_pred ceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec
Q 013498 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~ 158 (442)
+|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||.++|.|+++++.+++.... .+.|++|+
T Consensus 1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~--------~~~i~~~~ 72 (526)
T TIGR00977 1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFK--------NAKIVAFC 72 (526)
T ss_pred CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCC--------CcEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999864211 25799999
Q ss_pred ccchh----hHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC---CCCCC
Q 013498 159 RCNER----DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRS 231 (442)
Q Consensus 159 r~~~~----dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e---dasr~ 231 (442)
|+..+ ++++.++++..+|.++|++|+++||+|++++++++++|+++++.++|++||++|.. |.|++| |++|+
T Consensus 73 r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~-V~~~~e~f~D~~r~ 151 (526)
T TIGR00977 73 STRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE-VIYDAEHFFDGYKA 151 (526)
T ss_pred eecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeeeecccC
Confidence 98777 45788888888999999999999999999999999999999999999999999985 999888 88999
Q ss_pred CHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 232 d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
+++|+.++++.+.++|+++|+||||+|+++|.+++++|+.+++++|. .+|++|||||+|||+||+++|+++||++||
T Consensus 152 ~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~---~~i~vH~HND~GlAvANslaAv~AGA~~Vd 228 (526)
T TIGR00977 152 NPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQ---PQLGIHAHNDSGTAVANSLLAVEAGATMVQ 228 (526)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCC---CEEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999999999999999999999999999873 569999999999999999999999999999
Q ss_pred ecccccccccCcccHHHHHHHHHhccccccCCcc--CCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCcccc
Q 013498 312 VTINGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQD 389 (442)
Q Consensus 312 ~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~--tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~d 389 (442)
+|++|||||+||++||+++++|..+. |++ +++|+++|.++++++++++|+++++++||||+|+|+|+||||||
T Consensus 229 ~TinGiGERaGNa~Le~v~~~L~~~~-----g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~d 303 (526)
T TIGR00977 229 GTINGYGERCGNANLCSLIPNLQLKL-----GYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVS 303 (526)
T ss_pred EecccccCccCCCcHHHHHHHHHhhc-----CCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHH
Confidence 99999999999999999999998642 444 79999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 390 GMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 390 g~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|++|||.+||||+|++||++| +|+||||||+++|+++|+++|+++++
T Consensus 304 gi~k~~~~Ye~~~Pe~vG~~~----~i~lg~~SG~~~v~~~l~~~g~~l~~ 350 (526)
T TIGR00977 304 AVQRNPFTYEHIAPELVGNER----RIVVSELAGLSNVLSKAKEFGIEIDR 350 (526)
T ss_pred HHhCCccccccCCHHHcCCcc----EEEEecccCHHHHHHHHHHcCCCCCc
Confidence 999999999999999999987 59999999999999999999999875
No 10
>PRK03739 2-isopropylmalate synthase; Validated
Probab=100.00 E-value=6.3e-87 Score=711.30 Aligned_cols=349 Identities=28% Similarity=0.378 Sum_probs=324.0
Q ss_pred CCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee
Q 013498 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
.+.+.|+|||||||+|++|+.|++++|++|++.|+++||++||+|||.++++|+++++.|++... ... .+.+++
T Consensus 28 ~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~s~~e~e~v~~i~~~~~--~~~----~~~i~~ 101 (552)
T PRK03739 28 TKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSASQTDFDFVRELIEEGL--IPD----DVTIQV 101 (552)
T ss_pred CCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcChHHHHHHHHHHHhcC--CCC----CCEEEE
Confidence 36689999999999999999999999999999999999999999999999999999999976521 001 257899
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-------CCeEEEccCCCC
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG-------CDDVEFSPEDAG 229 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G-------~~~V~f~~edas 229 (442)
|+|+.+.||+++++++++++.++|++|+++||+|+++++++|++|+++++.++|++|+++| + .|.|++||++
T Consensus 102 l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~-~v~f~~EDas 180 (552)
T PRK03739 102 LTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEW-RFEYSPESFT 180 (552)
T ss_pred EeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCcee-EEEEecccCC
Confidence 9999999999999998888888999999999999999999999999999999999999988 4 4899999999
Q ss_pred CCCHHHHHHHHHHHHH---cCCc---EEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 230 RSDRKFLYEILGEVIK---VGAT---TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~---~Gad---~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
|+|++|+.++++.+.+ +|++ +|+||||+|+++|.+++++++.+++.+|...+++|++|||||+|||+||+++|+
T Consensus 181 R~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv 260 (552)
T PRK03739 181 GTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELAL 260 (552)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHH
Confidence 9999999999999887 4555 599999999999999999999999999855568899999999999999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhc
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHE 383 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~ 383 (442)
++||++||+|++|+|||+||++||+|+++|+.+ |+.+++|+++|.++++++++++|+++|+|+||||+|+|+|+
T Consensus 261 ~aGa~~v~gtvnG~GERaGNa~le~vv~~L~~~------g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~he 334 (552)
T PRK03739 261 MAGADRVEGCLFGNGERTGNVDLVTLALNLYTQ------GVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTAF 334 (552)
T ss_pred HhCCCEEEeeCCcCcccccChhHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhc
Confidence 999999999999999999999999999999765 78899999999999999999999999999999999999999
Q ss_pred cCccccccccCCC-----------CCCCCCccccCCCccccceEEecccccHHHHHHHHH-HcCCCccc
Q 013498 384 SGIHQDGMLKHKG-----------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-EVCQYVIF 440 (442)
Q Consensus 384 sGiH~dg~lk~~~-----------~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~-e~G~~~~~ 440 (442)
|||||||++|||. +||||+||+||++|. ..|++|||||+++|+++|+ ++||++++
T Consensus 335 sGiH~dgilk~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lgk~SG~~~i~~~l~~~lG~~l~~ 401 (552)
T PRK03739 335 SGSHQDAIKKGFAAQKADAIVWEVPYLPIDPADVGRSYE--AVIRVNSQSGKGGVAYLLEQDYGLDLPR 401 (552)
T ss_pred cchhHHHHhcCchhcccccccccccccccCHHHhCCcce--eEEEecccccHHHHHHHHHHHhCCCCCH
Confidence 9999999999988 899999999999873 2378999999999999998 69999875
No 11
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=100.00 E-value=1e-86 Score=680.21 Aligned_cols=334 Identities=52% Similarity=0.790 Sum_probs=319.9
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r 159 (442)
|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..+++|++.++.+.+... ...+++|+|
T Consensus 1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~---------~~~v~~~~r 71 (363)
T TIGR02090 1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQEGL---------NAEICSLAR 71 (363)
T ss_pred CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCC---------CcEEEEEcc
Confidence 58999999999999999999999999999999999999999999999999999999987532 257899999
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
++.+||++++++ |++.|++|+++||+|++.+++++++++++++.+++++||++|+. |+|++||++|++++++.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~r~~~~~l~~~ 146 (363)
T TIGR02090 72 ALKKDIDKAIDC----GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDATRTDIDFLIKV 146 (363)
T ss_pred cCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecCCCCHHHHHHH
Confidence 999999999875 89999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 240 ~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
++.+.++|+++|+||||+|.++|++++++|+.+++.++ ++|++|||||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~----~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe 222 (363)
T TIGR02090 147 FKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK----LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE 222 (363)
T ss_pred HHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC----ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc
Confidence 99999999999999999999999999999999999875 68999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCCC
Q 013498 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYE 399 (442)
Q Consensus 320 raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Ye 399 (442)
|+||++||+|+++|+.. +|+++++|+++|.++++++++++|+++|+++||||.|+|+|+||||+||++|||.+||
T Consensus 223 raGN~~lE~vv~~L~~~-----~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye 297 (363)
T TIGR02090 223 RAGNAALEEVVMALKYL-----YGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIENPLTYE 297 (363)
T ss_pred ccccccHHHHHHHHHHh-----hCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcCCcccCC
Confidence 99999999999999863 3788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 400 IISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 400 ~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
||+||.||++|. ++||+|||+++|+++|+++|+++++
T Consensus 298 ~~~P~~vG~~~~----~~~g~~SG~~~i~~~l~~~g~~~~~ 334 (363)
T TIGR02090 298 PISPEVVGNKRR----IILGKHSGRHAVEAKLKELGIKVTD 334 (363)
T ss_pred CCCHHHcCCcce----eechhhccHHHHHHHHHHcCCCCCH
Confidence 999999999884 9999999999999999999999874
No 12
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=100.00 E-value=1.3e-85 Score=702.71 Aligned_cols=350 Identities=28% Similarity=0.364 Sum_probs=326.4
Q ss_pred CCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee
Q 013498 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
.+.+.|+|||||||+|+++..|+.++|++|++.|+++||++||+|||++++.|+++++.+.+.... .. .+.+++
T Consensus 24 ~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s~~D~e~v~~i~~~~l~--~~----~~~i~a 97 (564)
T TIGR00970 24 TRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSASQTDFDFVREIIEQGAI--PD----DVTIQV 97 (564)
T ss_pred CcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcCC--CC----CcEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999875210 00 147899
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---------eEEEccCC
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---------DVEFSPED 227 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~---------~V~f~~ed 227 (442)
|+|+.+.||+++++++.+++.++|++|+++||+|+++++|+|++|+++++.++|+++|++|.. .|.|++||
T Consensus 98 l~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed 177 (564)
T TIGR00970 98 LTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPES 177 (564)
T ss_pred EcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEeccc
Confidence 999999999999999888888899999999999999999999999999999999999999752 38899999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC------cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGA------TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Ga------d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
++|+|++|+.++++++.++|+ ++|+||||+|+++|.+++++|+.+++++|...+++|++|||||+|||+||+++
T Consensus 178 ~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANsla 257 (564)
T TIGR00970 178 FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAEL 257 (564)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHH
Confidence 999999999999999999987 49999999999999999999999999988665688999999999999999999
Q ss_pred HHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhh
Q 013498 302 GACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFA 381 (442)
Q Consensus 302 Al~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~ 381 (442)
|+++||++||+|++|+|||+||++||+|+++|+.+ |+++++|++.|.++++++++++|+++++|+||||+|+|+
T Consensus 258 Av~aGa~~v~gt~~G~GERaGNa~le~lv~~L~~~------g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~ 331 (564)
T TIGR00970 258 GFLAGADRIEGCLFGNGERTGNVDLVTLALNLYTQ------GVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYT 331 (564)
T ss_pred HHHhCCCEEEeecCcCCccccCccHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhh
Confidence 99999999999999999999999999999999875 788999999999999999999999999999999999999
Q ss_pred hccCccccccccCCC---------------CCCCCCccccCCCccccceEEecccccHHHHHHHHH-HcCCCccc
Q 013498 382 HESGIHQDGMLKHKG---------------TYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLK-EVCQYVIF 440 (442)
Q Consensus 382 h~sGiH~dg~lk~~~---------------~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~-e~G~~~~~ 440 (442)
|+|||||||++|++. +||||+|++||++|. ..|+||+|||+++|+++|+ ++||++++
T Consensus 332 h~SGiH~dai~K~~~~~~~~~~~~~~~~~~~Ye~~~Pe~vG~~~~--~~i~lg~~SGk~~i~~~l~~~~G~~l~~ 404 (564)
T TIGR00970 332 AFSGSHQDAINKGLDAMKLDAAAADMLWQVPYLPLDPRDVGRTYE--AVIRVNSQSGKGGVAYIMKTDHGLDLPR 404 (564)
T ss_pred hccchhHHHHhcCchhhcccccccccccccccccCCHHHhCCccc--cEEEccccccHHHHHHHHHHHcCCCCCH
Confidence 999999999999976 999999999999862 2599999999999999997 89999874
No 13
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-85 Score=677.36 Aligned_cols=343 Identities=52% Similarity=0.788 Sum_probs=315.9
Q ss_pred CceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeee
Q 013498 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~ 157 (442)
++|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||.+++.|+++++.+....+. . ....+.+|
T Consensus 1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~----~~~~~~~~ 74 (409)
T COG0119 1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--F----ICALIAAL 74 (409)
T ss_pred CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--c----cchhhhhh
Confidence 36899999999999999999999999999999999999999999999999999999999853221 0 02345556
Q ss_pred cccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHH
Q 013498 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (442)
Q Consensus 158 ~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~ 237 (442)
.|..+++++.+ ..++.++|++|+++||+|+++++++|++++++++.++++||+++|++ +.|++||++|++++|+.
T Consensus 75 ~~~~~~~~ea~----~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~-~~~~~Ed~~rt~~~~l~ 149 (409)
T COG0119 75 ARAIKRDIEAL----LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLE-VRFSAEDATRTDPEFLA 149 (409)
T ss_pred HHhHHhhHHHH----HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeccccCCHHHHH
Confidence 66555555555 45699999999999999999999999999999999999999999985 99999999999999999
Q ss_pred HHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccc
Q 013498 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 317 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~Gl 317 (442)
++++.+.++|+++|+||||+|+++|.+++++|+.+++++|. +++|++|||||+|||+||+++|+++||++||+|++|+
T Consensus 150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~--~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGi 227 (409)
T COG0119 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPN--KVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGI 227 (409)
T ss_pred HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCC--CCeEEEEecCCcchHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999999999999999999999999999999984 4889999999999999999999999999999999999
Q ss_pred ccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCC
Q 013498 318 GERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGT 397 (442)
Q Consensus 318 GeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~ 397 (442)
|||+||+++|+++++|..+. .+|+++++|+.+|.++|+++++.+|+++|||+|+||+|+|+|+|||||||++|||.+
T Consensus 228 GERaGna~l~~v~~~l~~~~---~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~t 304 (409)
T COG0119 228 GERAGNAALEEVVLALALRK---DYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPET 304 (409)
T ss_pred eeccccccHHHHHHHHHHHh---hcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhh
Confidence 99999999999998888764 247899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCccccceEEec-ccccHHHHHHHHHHcCCCccc
Q 013498 398 YEIISPEDIGLERSSEAGIVLG-KLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 398 Ye~~~Pe~iG~~r~~~~~i~lg-~~SG~~~v~~~l~e~G~~~~~ 440 (442)
|||++||+||++|. ++++ ++||+++++.+|+++|+++++
T Consensus 305 YE~i~Pe~VG~~r~----~vi~~~~sg~~~~~~~l~~~g~~~~~ 344 (409)
T COG0119 305 YEPIDPEDVGRRRR----IVIGGKHSGRKAVKAKLEELGIELDE 344 (409)
T ss_pred cCCCCHHHcCCeee----eEeeccccchHHHHHHHHHhCCCCCH
Confidence 99999999999985 7777 999999999999999999863
No 14
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=100.00 E-value=3.8e-85 Score=694.90 Aligned_cols=344 Identities=31% Similarity=0.488 Sum_probs=321.5
Q ss_pred CCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEe
Q 013498 76 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC 155 (442)
Q Consensus 76 ~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~ 155 (442)
++++|+|+|||||||+|++++.|+.++|++|++.|+++||++||+|||++++.|+++++.+.+.... .+.++
T Consensus 2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~--------~~~i~ 73 (524)
T PRK12344 2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLK--------HAKLA 73 (524)
T ss_pred CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCC--------CcEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999874210 14789
Q ss_pred eecccchhhH----HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC---CC
Q 013498 156 GLSRCNERDI----KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DA 228 (442)
Q Consensus 156 ~~~r~~~~dI----~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e---da 228 (442)
+|+|+...|+ +..++++..+|+++|++|+++||+|+++++|+|++|+++++.+++++||++|.+ |+|++| |+
T Consensus 74 ~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~-v~~~~e~~~Da 152 (524)
T PRK12344 74 AFGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGRE-VIFDAEHFFDG 152 (524)
T ss_pred EEeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEcccccccc
Confidence 9999877776 667888888999999999999999999999999999999999999999999985 999998 88
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~ 308 (442)
+|+|++|+.++++.+.++|+++|+||||+|+++|.+++++|+.+++++ +++|++|||||+|||+||+++|+++||+
T Consensus 153 ~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~----~v~i~~H~HND~GlA~ANslaAi~aGa~ 228 (524)
T PRK12344 153 YKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP----GVPLGIHAHNDSGCAVANSLAAVEAGAR 228 (524)
T ss_pred ccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc----CCeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999988 3789999999999999999999999999
Q ss_pred EEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccc
Q 013498 309 QVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQ 388 (442)
Q Consensus 309 ~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~ 388 (442)
+||+|++|||||+||++||+|+++|..+.. +.+++++|+++|.++++++++++|+++++++||||+|+|+|+|||||
T Consensus 229 ~Vd~Tl~GlGERaGNa~lE~lv~~L~~~~g---~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~ 305 (524)
T PRK12344 229 QVQGTINGYGERCGNANLCSIIPNLQLKMG---YECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHV 305 (524)
T ss_pred EEEEecccccccccCcCHHHHHHHHHhccC---CCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccH
Confidence 999999999999999999999999986421 12558999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCCCcc
Q 013498 389 DGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVI 439 (442)
Q Consensus 389 dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~ 439 (442)
||++|||.+||||+|++||++|. |++|+|||+++|+++|+++|++++
T Consensus 306 dgi~k~~~~Ye~~~P~~vG~~~~----i~lg~~SG~~~i~~~l~~~g~~l~ 352 (524)
T PRK12344 306 SAVLKDPRTYEHIDPELVGNRRR----VLVSELAGRSNILAKAKELGIDLD 352 (524)
T ss_pred HHHhCCcccccCCCHHHhCCccc----ccccchhhHHHHHHHHHHcCCCCC
Confidence 99999999999999999999874 999999999999999999999973
No 15
>PRK14847 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-72 Score=557.83 Aligned_cols=297 Identities=25% Similarity=0.354 Sum_probs=273.2
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccc
Q 013498 65 TRPEYIPNRIPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAV 144 (442)
Q Consensus 65 ~~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~ 144 (442)
.=|++.|++.+. |+|||||||+|++|+.|+.++|++|++.|+++||++||+|||+++++|+++++.|++... +
T Consensus 23 ~w~~~~~~~~p~-----~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~--~ 95 (333)
T PRK14847 23 AWPARRPAAAPI-----WMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERR--I 95 (333)
T ss_pred CCcccccCCCCc-----eecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCC--C
Confidence 556777666554 999999999999999999999999999999999999999999999999999999987531 0
Q ss_pred cccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----C
Q 013498 145 DAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC-----D 219 (442)
Q Consensus 145 ~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~-----~ 219 (442)
. ..+.+++|+|++.+||+.++++++.++.++|++|+|+||+|++.+++++++++++++.++|+|||++|. .
T Consensus 96 ~----~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~ 171 (333)
T PRK14847 96 P----DDVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQ 171 (333)
T ss_pred C----CCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCc
Confidence 0 025799999999999999999998888899999999999999999999999999999999999999954 1
Q ss_pred -eEEEccCCCCCCCHHHHHHHHHHHHHc-C-----CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCc
Q 013498 220 -DVEFSPEDAGRSDRKFLYEILGEVIKV-G-----ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDL 292 (442)
Q Consensus 220 -~V~f~~edasr~d~~~l~~~~~~~~~~-G-----ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDl 292 (442)
.|+|++||++|+|++||.++++.+.+. | +++|+|+||+|+++|.+++++|+.++++++..++++|++|||||+
T Consensus 172 ~~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~ 251 (333)
T PRK14847 172 WIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDR 251 (333)
T ss_pred eEEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCC
Confidence 499999999999999999999988665 5 777999999999999999999999999887544689999999999
Q ss_pred chHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCC
Q 013498 293 GLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHK 372 (442)
Q Consensus 293 GLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~ 372 (442)
|||+||+++|+++||++||+|++|+|||+||++||+|+++|... |+.+++|++.|.++++++++++|+++++|+
T Consensus 252 GlA~ANslaA~~aGa~~i~~tv~G~GERaGNa~lE~v~~~L~~~------g~~~~id~~~l~~~~~~v~~~sg~~v~~~k 325 (333)
T PRK14847 252 GTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQ------GIASGLDFRDMAALRACVSECNQLPIDVFH 325 (333)
T ss_pred chHHHHHHHHHHhCCCEEEeeCCcCCccccchhHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999999999999999999999999864 788999999999999999999999999999
Q ss_pred ccccch
Q 013498 373 AIVGAN 378 (442)
Q Consensus 373 pivG~~ 378 (442)
||||.+
T Consensus 326 Pivg~~ 331 (333)
T PRK14847 326 PYAWLD 331 (333)
T ss_pred CeecCC
Confidence 999954
No 16
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=100.00 E-value=5.2e-63 Score=488.74 Aligned_cols=276 Identities=30% Similarity=0.452 Sum_probs=252.6
Q ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHHH-hHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 83 FDTTLRDGEQSPGATLTSKEKLDIARQL-AKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 83 ~DtTLRDG~Q~~g~~fs~e~kl~ia~~L-~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
+|||||||+|+++..|++++|++|++.| +++||+.||+|+|..+++|++.++++++..... . . .....+++|.+ +
T Consensus 1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~-~-~-~~~~~~~a~~~-~ 76 (280)
T cd07945 1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEE-G-L-LDRIEVLGFVD-G 76 (280)
T ss_pred CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhh-c-c-ccCcEEEEecC-c
Confidence 5999999999999999999999999997 888999999999999999999999998753211 0 0 00136777876 4
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC---CCCHHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFLYE 238 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas---r~d~~~l~~ 238 (442)
..++++|+++ |++.|++++|+||.|+++|+|+|++|+++++.+++++|+++|++ |+|+++|.+ |++++++.+
T Consensus 77 ~~~~~~A~~~----g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~~~ 151 (280)
T cd07945 77 DKSVDWIKSA----GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYVFQ 151 (280)
T ss_pred HHHHHHHHHC----CCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHHHH
Confidence 6788887775 89999999999999999999999999999999999999999985 999999866 899999999
Q ss_pred HHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccc
Q 013498 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlG 318 (442)
+++.+.++|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus 152 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~---~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlG 228 (280)
T cd07945 152 LVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPN---LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG 228 (280)
T ss_pred HHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCC---CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccccc
Confidence 9999999999999999999999999999999999999874 7899999999999999999999999999999999999
Q ss_pred cccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccc
Q 013498 319 ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIV 375 (442)
Q Consensus 319 eraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~piv 375 (442)
||+||++||+|+++|+.+ +|+++++|+++|.++++++++++|+++++|+|||
T Consensus 229 e~aGN~~~E~~v~~L~~~-----~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv 280 (280)
T cd07945 229 ERAGNAPLASVIAVLKDK-----LKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV 280 (280)
T ss_pred ccccCccHHHHHHHHHHh-----cCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence 999999999999999653 3788999999999999999999999999999986
No 17
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=100.00 E-value=5.1e-62 Score=481.40 Aligned_cols=269 Identities=32% Similarity=0.445 Sum_probs=245.5
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
-+|+|||||+|+++..||+++|++|++.|+++||+.||+|||.++++|++.++.+++.... . ....+++|+|+.
T Consensus 4 ~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gfP~~~~~e~e~~~~i~~~~~~--~----~~~~~~al~r~~ 77 (284)
T cd07942 4 WCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGFPSASQTDFDFVRELIEEDLI--P----DDVTIQVLTQAR 77 (284)
T ss_pred ccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHccCC--C----CCCEEEEEcCCC
Confidence 4699999999999999999999999999999999999999999999999999999764210 0 024688999999
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC------eEEEccCCCCCCCHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD------DVEFSPEDAGRSDRKF 235 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~------~V~f~~edasr~d~~~ 235 (442)
+.||+++++++.+++.++|++|+|+||.|+++|+|+|++|+++++.+++++|+++|.+ .|.|+.||++|++++|
T Consensus 78 ~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~ 157 (284)
T cd07942 78 EDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDF 157 (284)
T ss_pred hhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHH
Confidence 9999999998655555689999999999999999999999999999999999999852 4889999999999999
Q ss_pred HHHHHHHHHHc---CC---cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 236 LYEILGEVIKV---GA---TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 236 l~~~~~~~~~~---Ga---d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
+.++++.+.++ |+ ++|+||||+|+++|.++++++..+++.+|..++++|++|+|||+|||+||+++|+++||++
T Consensus 158 l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~ 237 (284)
T cd07942 158 ALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADR 237 (284)
T ss_pred HHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCE
Confidence 99999999887 54 4999999999999999999999999998865457899999999999999999999999999
Q ss_pred EEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 310 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 310 vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
||+|++|+|||+||++||+|+++|+.. |+++++|+++|.++++++++
T Consensus 238 id~~~~g~GeRaGN~~~E~lv~~l~~~------g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 238 VEGTLFGNGERTGNVDLVTLALNLYSQ------GVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred EEeeCccCCccccchhHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHhC
Confidence 999999999999999999999999864 78899999999999999874
No 18
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=100.00 E-value=1.6e-61 Score=473.83 Aligned_cols=262 Identities=30% Similarity=0.410 Sum_probs=245.8
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r 159 (442)
++|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|..+|++++.++.+++.. +.+.+.+|+|
T Consensus 1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~---------~~~~v~~~~r 71 (262)
T cd07948 1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEAIAKLG---------LKAKILTHIR 71 (262)
T ss_pred CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCC---------CCCcEEEEec
Confidence 4799999999999999999999999999999999999999999999999999999987642 2246788999
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
++.+|+++++++ |++.|++++|+||.|++.+++++++|+++.+.+++++||++|+. |++++||++|++++++.++
T Consensus 72 ~~~~di~~a~~~----g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~-v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 72 CHMDDARIAVET----GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIE-VRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeeCCCCHHHHHHH
Confidence 999999999885 89999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred HHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 240 ~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
++.+.++|+++|+|+||+|.++|++++++++.+++.++ ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 147 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~----~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe 222 (262)
T cd07948 147 YRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS----CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE 222 (262)
T ss_pred HHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc
Confidence 99999999999999999999999999999999999885 67999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 320 RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 320 raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
|+||++||+|+.+|+..+. .|+.+++|+++|.++++++++
T Consensus 223 raGn~~~e~~~~~l~~~~~---~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 223 RNGITPLGGLIARMYTADP---EYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred ccCCccHHHHHHHHHhccc---cCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999986532 256789999999999999864
No 19
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=100.00 E-value=9.1e-61 Score=482.72 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=246.7
Q ss_pred CCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCC---h---hHHHHHHHHHHHhcccccccCC
Q 013498 76 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K---EDFEAVRTIAKEVGNAVDAESG 149 (442)
Q Consensus 76 ~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~---~d~e~v~~l~~~~~~~~~~~~~ 149 (442)
+|++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|.+. | ++.|.++.+.+.. .
T Consensus 43 m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~-~------- 114 (347)
T PLN02746 43 LPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLE-G------- 114 (347)
T ss_pred CCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhcc-C-------
Confidence 367899999999999999999999999999999999999999999987531 2 3455666665421 1
Q ss_pred ccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EE
Q 013498 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 223 (442)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V------~f 223 (442)
..+.+|++ +.+|+++|+++ |++.|++++|+||.|+++|+++|++|+++++.++|++||++|+. | .|
T Consensus 115 --~~~~~l~~-n~~die~A~~~----g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~-v~~~is~~f 186 (347)
T PLN02746 115 --ARFPVLTP-NLKGFEAAIAA----GAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIP-VRGYVSCVV 186 (347)
T ss_pred --CceeEEcC-CHHHHHHHHHc----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeee
Confidence 13445654 99999999886 89999999999999999999999999999999999999999985 5 47
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
+++|.+|+|++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++.+|. .+|++|||||+|||+||+++|+
T Consensus 187 g~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~lAA~ 263 (347)
T PLN02746 187 GCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV---DKLAVHFHDTYGQALANILVSL 263 (347)
T ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC---CeEEEEECCCCChHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999873 5799999999999999999999
Q ss_pred HhCCCEEEeccccccc------ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCC
Q 013498 304 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHK 372 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGe------raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~ 372 (442)
++||++||+|++|||| |+||++||+|+++|+.. |+++++|+++|.++++++++++|++++++.
T Consensus 264 ~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~------G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~ 332 (347)
T PLN02746 264 QMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGL------GVSTNVDLGKLMAAGDFISKHLGRPSGSKT 332 (347)
T ss_pred HhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999 99999999999999875 788999999999999999999999988764
No 20
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=100.00 E-value=8.5e-61 Score=468.54 Aligned_cols=258 Identities=43% Similarity=0.577 Sum_probs=244.1
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|..++++++.++.+.+... ...+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~---------~~~~~~~~r~~ 71 (259)
T cd07939 1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGL---------PARLIVWCRAV 71 (259)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCC---------CCEEEEeccCC
Confidence 689999999999999999999999999999999999999999999999999999877422 24688999999
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~ 241 (442)
.+|++++.++ |++.|++++++|+.|+++++|+|++++++++.+++++||++|+. |+|+++|++|++++++.++++
T Consensus 72 ~~~v~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 146 (259)
T cd07939 72 KEDIEAALRC----GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDASRADPDFLIEFAE 146 (259)
T ss_pred HHHHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCCCCCHHHHHHHHH
Confidence 9999988765 89999999999999999999999999999999999999999994 999999999999999999999
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccccc
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGera 321 (442)
.+.++|+++|+|+||+|.++|++++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|++|||||+
T Consensus 147 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~a 222 (259)
T cd07939 147 VAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD----LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERA 222 (259)
T ss_pred HHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccc
Confidence 999999999999999999999999999999999986 6799999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 322 GNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
||++||+++.+|+.. +|+++++|+++|.++++++++
T Consensus 223 GN~~tE~lv~~l~~~-----~g~~~~idl~~l~~~~~~~~~ 258 (259)
T cd07939 223 GNAALEEVVMALKHL-----YGRDTGIDTTRLPELSQLVAR 258 (259)
T ss_pred cCcCHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHHh
Confidence 999999999999975 267899999999999999886
No 21
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=100.00 E-value=1.5e-60 Score=469.02 Aligned_cols=268 Identities=61% Similarity=0.892 Sum_probs=250.0
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
|+|||||||+|++++.|++++|++|++.|+++||+.||+|||..+++|++.++.+.+..++ ..+.+|+|++
T Consensus 1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~r~~ 71 (268)
T cd07940 1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLN---------AEICGLARAV 71 (268)
T ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCC---------CEEEEEccCC
Confidence 6899999999999999999999999999999999999999998899999999999876432 3678999999
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~ 241 (442)
.+|+++++++.+..++++|++++++||.|+++|++++++++++.+.+++++++++|+. |+|++++++|++++++.++++
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~~~~~ 150 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDATRTDLDFLIEVVE 150 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecCCCCCHHHHHHHHH
Confidence 9999999998555569999999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccccc
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGera 321 (442)
++.++|+++|+|+||+|.++|.+++++++.+++++|++ +++|++|+|||+|||+||+++|+++||++||+|++|||||+
T Consensus 151 ~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~-~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~a 229 (268)
T cd07940 151 AAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNI-KVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERA 229 (268)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCC-ceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccccc
Confidence 99999999999999999999999999999999999742 37899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 322 GNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
||++||+|+.+|+.++++ +|+++++|+++|.++++++++
T Consensus 230 GN~~tE~lv~~L~~~~~~--~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 230 GNAALEEVVMALKTRYDY--YGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ccccHHHHHHHHHhcccc--cCCCCCcCHHHHHHHHHHHhC
Confidence 999999999999987532 368899999999999999863
No 22
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=100.00 E-value=1.5e-59 Score=465.53 Aligned_cols=267 Identities=19% Similarity=0.346 Sum_probs=243.9
Q ss_pred CCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEc-------cCCCChhHHHHHHHHHHHhcccccccCC
Q 013498 77 PNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAG-------FPAASKEDFEAVRTIAKEVGNAVDAESG 149 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG-------~p~~~~~d~e~v~~l~~~~~~~~~~~~~ 149 (442)
|++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+| +|..+ +.++.++.+.+. ++
T Consensus 2 ~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~-d~~e~~~~l~~~-~~------- 72 (287)
T PRK05692 2 PKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMA-DAAEVMAGIQRR-PG------- 72 (287)
T ss_pred CCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccc-cHHHHHHhhhcc-CC-------
Confidence 467999999999999999999999999999999999999999999 45443 246777777642 11
Q ss_pred ccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EE
Q 013498 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EF 223 (442)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V------~f 223 (442)
..+.+|. .+.+|+++|+++ |++.|++|+++||.|+++|++++++|+++++.++|++||++|+. | .|
T Consensus 73 --~~~~~l~-~~~~~ie~A~~~----g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~-v~~~i~~~~ 144 (287)
T PRK05692 73 --VTYAALT-PNLKGLEAALAA----GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR-VRGYVSCVL 144 (287)
T ss_pred --CeEEEEe-cCHHHHHHHHHc----CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEEEEe
Confidence 2455665 489999999886 99999999999999999999999999999999999999999985 5 36
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
++++.+|++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hn~~Gla~AN~laA~ 221 (287)
T PRK05692 145 GCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA---ERLAGHFHDTYGQALANIYASL 221 (287)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC---CeEEEEecCCCCcHHHHHHHHH
Confidence 7788899999999999999999999999999999999999999999999999974 7899999999999999999999
Q ss_pred HhCCCEEEeccccccc------ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCC
Q 013498 304 CAGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQ 369 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGe------raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~ 369 (442)
++||++||+|++|||| |+||++||+++++|+.. |+++++|+++|.++++++++++|+++|
T Consensus 222 ~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~------g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 222 EEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGL------GIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred HhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999 99999999999999865 788999999999999999999999875
No 23
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=100.00 E-value=5.4e-58 Score=464.06 Aligned_cols=332 Identities=33% Similarity=0.501 Sum_probs=310.4
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
|+|||||||+|..++.|+.++|+++++.|+++||+.||+|+|..++++++.++.++... ....+.+|+|+.
T Consensus 1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 71 (344)
T TIGR02146 1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRIDIEIIASLG---------LKANIVTHIRCR 71 (344)
T ss_pred CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHhcC---------CCcEEEEECCCC
Confidence 68999999999999999999999999999999999999999999999888888777642 224688999988
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~ 241 (442)
.++++.+.++ +++.+.++.+.|++|+..+++++.++..+.+..+++++++.|+. +.++++++++.+++++.++++
T Consensus 72 ~~~~~~a~~~----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~-~~~~~~~~~~~~~~~~~~~~d 146 (344)
T TIGR02146 72 LDDAKVAVEL----GVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLE-VRFSAEDTFRSELADLLSIYE 146 (344)
T ss_pred HHHHHHHHHC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEeeCCCCCHHHHHHHHH
Confidence 9999988875 78899999999999999999999999999999999999999985 999999999999999999999
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccccc
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGera 321 (442)
.+.++|++.|+++||+|.+.|.+++.++..+++..+. +++++|+|||+|||++|+++|+.+||+++|+|++|||+|+
T Consensus 147 ~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~---~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~~~ 223 (344)
T TIGR02146 147 TVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPG---VDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGERN 223 (344)
T ss_pred HHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCC---CeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeCCC
Confidence 9999999999999999999999999999999998764 7899999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCCCCC
Q 013498 322 GNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEII 401 (442)
Q Consensus 322 GNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Ye~~ 401 (442)
||+++|.++..|... .|+. .+|+..+.++++.++...+.++++++|++|.++|.|++|+|+++++|+|.+|+++
T Consensus 224 G~~~l~~~~~~L~~~-----~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~ 297 (344)
T TIGR02146 224 GITPLGGILARLYYH-----TPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFL 297 (344)
T ss_pred CCccHHHHHHHHHHh-----cCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCC
Confidence 999999999888865 2443 3799999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccccceEEecccccHHHHHHHHHHcCCCccc
Q 013498 402 SPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQYVIF 440 (442)
Q Consensus 402 ~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~~~~~ 440 (442)
+|+.+|+.|. ++++++||+++++++|+++|+++++
T Consensus 298 ~~s~~g~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~ 332 (344)
T TIGR02146 298 PPEVFGRKRH----ILIARLTGKHAIKARKEKLGVKLIE 332 (344)
T ss_pred CHHHcCCcce----EeeeccccHHHHHHHHHHcCCCCCH
Confidence 9999999874 9999999999999999999999875
No 24
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=100.00 E-value=2.4e-58 Score=454.56 Aligned_cols=264 Identities=32% Similarity=0.498 Sum_probs=237.9
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN 161 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~ 161 (442)
|+|||||||+|++++.|+.++|++|++.|+++||+.||+|||.+++.++++++.+++.... ...+.+|+|+.
T Consensus 1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 72 (273)
T cd07941 1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLK--------HAKLAAFGSTR 72 (273)
T ss_pred CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCC--------CcEEEEEeccc
Confidence 6899999999999999999999999999999999999999999999999999888765210 13577888876
Q ss_pred hhhHH----HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC---CCCCCCHH
Q 013498 162 ERDIK----TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE---DAGRSDRK 234 (442)
Q Consensus 162 ~~dI~----~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e---dasr~d~~ 234 (442)
..++. +.++....+|++.|++++++||.|++.++|+++++.++++.++++++|++|+. |+++++ |++|++++
T Consensus 73 ~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~~~~~d~~~~~~~ 151 (273)
T cd07941 73 RAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGRE-VIFDAEHFFDGYKANPE 151 (273)
T ss_pred ccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCe-EEEeEEeccccCCCCHH
Confidence 66542 23444556799999999999999999999999999999999999999999995 888776 77899999
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
++.++++.+.++|+++|+|+||+|.++|++++++++.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus 152 ~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~ 228 (273)
T cd07941 152 YALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG---VPLGIHAHNDSGLAVANSLAAVEAGATQVQGTI 228 (273)
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC---CeeEEEecCCCCcHHHHHHHHHHcCCCEEEEec
Confidence 99999999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred cccccccCcccHHHHHHHHHhccccccCCcc--CCCChhHHHHHHHHHHH
Q 013498 315 NGIGERAGNASLEEVVMAFKCRGEHILGGLY--TGINTRHIVMASKMVEE 362 (442)
Q Consensus 315 ~GlGeraGNa~lEevv~~L~~~g~~~~~G~~--tgidl~~L~~ls~~v~~ 362 (442)
+|||||+||++||+++.+|+.+. |.. +++|++.|.++++++++
T Consensus 229 ~GlGeraGn~~~e~~~~~L~~~~-----~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 229 NGYGERCGNANLCSIIPNLQLKM-----GYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred cccccccccccHHHHHHHHHhcc-----CCCCcCccCHHHHHHHHHHHhC
Confidence 99999999999999999998542 333 58999999999999863
No 25
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=100.00 E-value=2.3e-57 Score=447.44 Aligned_cols=254 Identities=20% Similarity=0.373 Sum_probs=229.8
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEcc-------CCCChhHHHHHHHHHHHhcccccccCCccceE
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF-------PAASKEDFEAVRTIAKEVGNAVDAESGYVPVI 154 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~-------p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i 154 (442)
|+|||||||+|+++..|++++|++|++.|+++||+.||+|+ |.....+ +.++.+... . ...+
T Consensus 1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~-~~~~~l~~~-~---------~~~~ 69 (274)
T cd07938 1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAE-EVLAGLPRR-P---------GVRY 69 (274)
T ss_pred CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHH-HHHhhcccC-C---------CCEE
Confidence 68999999999999999999999999999999999999994 3333222 344443321 1 1467
Q ss_pred eeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeE------EEccCCC
Q 013498 155 CGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDV------EFSPEDA 228 (442)
Q Consensus 155 ~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V------~f~~eda 228 (442)
.+|+ ++.+|+++|+++ |++.|++++++||.|+++|++++++++++++.+.++++|+.|+. | .|++++.
T Consensus 70 ~~~~-~~~~dv~~A~~~----g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~ 143 (274)
T cd07938 70 SALV-PNLRGAERALAA----GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLR-VRGYVSTAFGCPYE 143 (274)
T ss_pred EEEC-CCHHHHHHHHHc----CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeEecCCCC
Confidence 8886 689999999886 89999999999999999999999999999999999999999985 5 5788899
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~ 308 (442)
+|++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++|+ ++|++|+|||+|||+||+++|+++||+
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~i~~H~Hnd~GlA~AN~laA~~aGa~ 220 (274)
T cd07938 144 GEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPD---EKLALHFHDTRGQALANILAALEAGVR 220 (274)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCC---CeEEEEECCCCChHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999974 789999999999999999999999999
Q ss_pred EEEecccccc------cccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHH
Q 013498 309 QVEVTINGIG------ERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 361 (442)
Q Consensus 309 ~vd~Tv~GlG------eraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~ 361 (442)
+||+|++||| ||+||++||+|+++|+.. |+++++|+++|.+++++++
T Consensus 221 ~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~------g~~t~idl~~l~~~~~~~~ 273 (274)
T cd07938 221 RFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGM------GIETGIDLDKLLAAARWIS 273 (274)
T ss_pred EEEEeccccCCCCCCCCccCCcCHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHh
Confidence 9999999999 799999999999999865 7889999999999999886
No 26
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=100.00 E-value=3.1e-57 Score=446.78 Aligned_cols=259 Identities=27% Similarity=0.373 Sum_probs=235.6
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcC-----CCEEEEccCCCChhHHHHHHHHHHHhcccccccCCc-cce
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-----VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPV 153 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~G-----V~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l-~~~ 153 (442)
|+|+|||||||+|+++.. ++++|++|++.|+++| |+.||++ +.+++|++.++.+.+.. + .+.
T Consensus 1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~--s~~~~d~~~v~~~~~~~---------~~~~~ 68 (279)
T cd07947 1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFF--LYTEKDREAVEACLDRG---------YKFPE 68 (279)
T ss_pred CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEec--CcChHHHHHHHHHHHcC---------CCCCE
Confidence 689999999999999985 9999999999999999 9999994 45778999999887641 2 257
Q ss_pred EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCH
Q 013498 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (442)
Q Consensus 154 i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~ 233 (442)
+++|.|++.+|+++|+++ |++.|++++|+||.|+++|+|+|++|+++++.+++++||++|+ .|.+++||++|+|+
T Consensus 69 v~~~~r~~~~die~A~~~----g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r~d~ 143 (279)
T cd07947 69 VTGWIRANKEDLKLVKEM----GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGI-KPRCHLEDITRADI 143 (279)
T ss_pred EEEEecCCHHHHHHHHHc----CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC-eEEEEEEcccCCCc
Confidence 889999999999999886 8999999999999999999999999999999999999999998 49999999999988
Q ss_pred H-----HHHHHHHHHHHcCCc-EEeccCcccccCH-------HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 234 K-----FLYEILGEVIKVGAT-TLNIPDTVGITMP-------TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 234 ~-----~l~~~~~~~~~~Gad-~I~laDT~G~~~P-------~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
+ ++.++++.+.++|++ +|+||||+|+++| .+++++++.+++.++ .++++|++|+|||+|||+||++
T Consensus 144 ~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~-~p~~~l~~H~Hn~~Gla~AN~l 222 (279)
T cd07947 144 YGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCG-VPSENLEWHGHNDFYKAVANAV 222 (279)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcC-CCCceEEEEecCCCChHHHHHH
Confidence 3 788888888889999 8999999999988 689999999998843 1147799999999999999999
Q ss_pred HHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHH
Q 013498 301 AGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 361 (442)
Q Consensus 301 aAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~ 361 (442)
+|+++||++||+|++|||||+||++||+|+++|+.+ +|+++++|+++|.+++++++
T Consensus 223 aA~~aG~~~vd~sv~GlGe~aGN~~tE~lv~~l~~~-----~g~~t~idl~~l~~~~~~~~ 278 (279)
T cd07947 223 AAWLYGASWVNCTLLGIGERTGNCPLEAMVIEYAQL-----KGNFDGMNLEVITEIAEYFE 278 (279)
T ss_pred HHHHhCCCEEEEecccccccccchhHHHHHHHHHHh-----cCCCCCcCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875 26789999999999999876
No 27
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=100.00 E-value=7.1e-55 Score=425.21 Aligned_cols=256 Identities=38% Similarity=0.565 Sum_probs=240.0
Q ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCC------hhHHHHHHHHHHHhcccccccCCccceEee
Q 013498 83 FDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAAS------KEDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 83 ~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~------~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
+|||||||+|++++.|++++|+++++.|+++||++||+|+|... +++++.++.+.+..++ ..+.+
T Consensus 1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~---------~~~~~ 71 (265)
T cd03174 1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPN---------VKLQA 71 (265)
T ss_pred CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCC---------cEEEE
Confidence 59999999999999999999999999999999999999999876 6788999998876422 35678
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC--CCHH
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR--SDRK 234 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr--~d~~ 234 (442)
|+|...++++++.++ |+++|+++++.||.|.+.|+++++++.++.+.+.++++++.|++ |.++++++++ ++++
T Consensus 72 l~~~~~~~i~~a~~~----g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~ 146 (265)
T cd03174 72 LVRNREKGIERALEA----GVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPE 146 (265)
T ss_pred EccCchhhHHHHHhC----CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHH
Confidence 888778889888775 89999999999999999999999999999999999999999995 9999999999 9999
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
++.++++.+.++|+++|+|+||+|.++|++++++++.+++.+++ ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus 147 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~---~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~ 223 (265)
T cd03174 147 YVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD---VPLGLHTHNTLGLAVANSLAALEAGADRVDGSV 223 (265)
T ss_pred HHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC---CeEEEEeCCCCChHHHHHHHHHHcCCCEEEecc
Confidence 99999999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred cccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHH
Q 013498 315 NGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 361 (442)
Q Consensus 315 ~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~ 361 (442)
+|||||+||++||+++.+|+.+ |+++++|++.|.+++++++
T Consensus 224 ~G~G~~~Gn~~~e~~~~~l~~~------~~~~~~~~~~l~~~~~~~~ 264 (265)
T cd03174 224 NGLGERAGNAATEDLVAALEGL------GIDTGIDLEKLLEISRYVE 264 (265)
T ss_pred ccccccccCccHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999987 5779999999999999876
No 28
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=100.00 E-value=3.8e-54 Score=422.41 Aligned_cols=246 Identities=26% Similarity=0.327 Sum_probs=220.1
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCC-----------CChhHHHHHHHHHHHhcccccccC
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPA-----------ASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~-----------~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
|+|+|||||||+|++++.|++++|++|++.|+++||+.||+||+. ...++++.++.+.+..++.
T Consensus 1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~----- 75 (263)
T cd07943 1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQA----- 75 (263)
T ss_pred CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCC-----
Confidence 689999999999999999999999999999999999999999641 1234688888887654331
Q ss_pred CccceEeee---cccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 013498 149 GYVPVICGL---SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (442)
Q Consensus 149 ~l~~~i~~~---~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ 225 (442)
.+.+| ++++.+|+++++++ |++.|+++.+.|+.| .+.++++++|+.|++ |.+++
T Consensus 76 ----~~~~~~~~~~~~~~~i~~a~~~----g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~-v~~~~ 132 (263)
T cd07943 76 ----KLGVLLLPGIGTVDDLKMAADL----GVDVVRVATHCTEAD--------------VSEQHIGAARKLGMD-VVGFL 132 (263)
T ss_pred ----EEEEEecCCccCHHHHHHHHHc----CCCEEEEEechhhHH--------------HHHHHHHHHHHCCCe-EEEEE
Confidence 34444 37788999988775 899999999999854 467899999999995 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 226 edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+++++++++++.++++.+.++|+++|+|+||+|.++|++++++++.++++++. ++|++|+|||+|||+||+++|+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~---~~l~~H~Hn~~GlA~AN~laAi~a 209 (263)
T cd07943 133 MMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDP---TPVGFHGHNNLGLAVANSLAAVEA 209 (263)
T ss_pred EeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCC---ceEEEEecCCcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999873 589999999999999999999999
Q ss_pred CCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 306 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 306 Ga~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
||++||+|++|||||+||++||+++.+|+.. |+.+++|+++|.++++++.+
T Consensus 210 Ga~~vd~s~~GlG~~aGN~~~E~lv~~L~~~------g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 210 GATRIDGSLAGLGAGAGNTPLEVLVAVLERM------GIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred CCCEEEeecccccCCcCCccHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999865 67899999999999998753
No 29
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=100.00 E-value=1.7e-54 Score=427.44 Aligned_cols=246 Identities=24% Similarity=0.281 Sum_probs=223.3
Q ss_pred EEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEccCC--------CChhHHHHHHHHHHHhcccccccCCccc
Q 013498 82 VFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESGYVP 152 (442)
Q Consensus 82 I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~--------~~~~d~e~v~~l~~~~~~~~~~~~~l~~ 152 (442)
|+|||||||+|++ +..|+.++|++|++.|+++||+.||+|+|+ .+.++++.++.+.+..++ .
T Consensus 1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~---------~ 71 (275)
T cd07937 1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPN---------T 71 (275)
T ss_pred CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCC---------C
Confidence 6899999999998 899999999999999999999999999997 377889999999887543 2
Q ss_pred eEeeeccc-------------chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 013498 153 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 219 (442)
Q Consensus 153 ~i~~~~r~-------------~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~ 219 (442)
.+.+|+|+ .++|++.+.++ |++.|+++++.|+ ++++.++++++|++|+.
T Consensus 72 ~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~----g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~ 133 (275)
T cd07937 72 PLQMLLRGQNLVGYRHYPDDVVELFVEKAAKN----GIDIFRIFDALND--------------VRNLEVAIKAVKKAGKH 133 (275)
T ss_pred ceehhcccccccCccCCCcHHHHHHHHHHHHc----CCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCe
Confidence 46778886 56777777664 8999999999997 47888999999999985
Q ss_pred eEEE--ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 013498 220 DVEF--SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (442)
Q Consensus 220 ~V~f--~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A 297 (442)
|.+ +.+++++++++++.++++++.++|+++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|||+|
T Consensus 134 -v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~----~~l~~H~Hnd~GlA~a 208 (275)
T cd07937 134 -VEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG----LPIHLHTHDTSGLAVA 208 (275)
T ss_pred -EEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC----CeEEEEecCCCChHHH
Confidence 665 446789999999999999999999999999999999999999999999999985 6799999999999999
Q ss_pred HHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhC
Q 013498 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (442)
Q Consensus 298 NalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g 365 (442)
|+++|+++||++||+|++|||||+||++||+++.+|+.+ |+++++|+++|.+++++++++..
T Consensus 209 N~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~------g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 209 TYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGT------GRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred HHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHcc------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999975 67899999999999999998753
No 30
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=100.00 E-value=3.1e-54 Score=423.68 Aligned_cols=246 Identities=20% Similarity=0.286 Sum_probs=219.0
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhH---------HHHHHHHHHHhcccccccCCccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKED---------FEAVRTIAKEVGNAVDAESGYVP 152 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d---------~e~v~~l~~~~~~~~~~~~~l~~ 152 (442)
|+|||||||+|.+++.|+.++|++|++.|+++||++||+|||..++++ .+.++.+.+.... ..
T Consensus 1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~~ 72 (266)
T cd07944 1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKG--------NT 72 (266)
T ss_pred CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhcc--------CC
Confidence 689999999999999999999999999999999999999999876543 6788888775321 13
Q ss_pred eEeeecccch---hhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC
Q 013498 153 VICGLSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 229 (442)
Q Consensus 153 ~i~~~~r~~~---~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas 229 (442)
.+.+|+|... +|++.+.+ +|++.|+++++.++ ++++.++++++|++|++ |.+++++++
T Consensus 73 ~~~~~~~~~~~~~~~l~~a~~----~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~-v~~~~~~a~ 133 (266)
T cd07944 73 KIAVMVDYGNDDIDLLEPASG----SVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYE-VFFNLMAIS 133 (266)
T ss_pred EEEEEECCCCCCHHHHHHHhc----CCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCe-EEEEEEeec
Confidence 6777887764 66666654 58999999887653 68889999999999995 999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
+++++++.++++.+.++|+++|+|+||+|.++|++++++++.+++++++ +++|++|+|||+|||+||+++|+++||++
T Consensus 134 ~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~--~~~i~~H~Hn~~Gla~AN~laA~~aGa~~ 211 (266)
T cd07944 134 GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDK--DIKLGFHAHNNLQLALANTLEAIELGVEI 211 (266)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCC--CceEEEEeCCCccHHHHHHHHHHHcCCCE
Confidence 9999999999999999999999999999999999999999999999863 48899999999999999999999999999
Q ss_pred EEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHH-HHHHHH
Q 013498 310 VEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS-KMVEEY 363 (442)
Q Consensus 310 vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls-~~v~~~ 363 (442)
||+|++|||||+||++||+++++|+.+ +.+++|+++|.+++ +++..+
T Consensus 212 vd~s~~G~G~~aGN~~~E~~v~~l~~~-------~~~~~dl~~l~~~~~~~~~~~ 259 (266)
T cd07944 212 IDATVYGMGRGAGNLPTELLLDYLNNK-------FGKKYNLEPVLELIDEYIAPL 259 (266)
T ss_pred EEEecccCCCCcCcHHHHHHHHHHHHh-------hccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 34789999999999 677654
No 31
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=100.00 E-value=3.4e-54 Score=415.56 Aligned_cols=236 Identities=42% Similarity=0.664 Sum_probs=219.2
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHH
Q 013498 88 RDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (442)
Q Consensus 88 RDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (442)
|||+|++++.|+.++|++|++.|+++||++||+|+|..++++++.++.+.+...+ ..+.+|+|+..++++.
T Consensus 1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~i~~ 71 (237)
T PF00682_consen 1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN---------ARLQALCRANEEDIER 71 (237)
T ss_dssp THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS---------SEEEEEEESCHHHHHH
T ss_pred CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc---------cccceeeeehHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887543 3678899999999999
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
+++.++.+|++.+++++++||.|++.++++++++.++++.++++++|++|+. |.|++++++|++++++.++++.+.++|
T Consensus 72 ~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (237)
T PF00682_consen 72 AVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYE-VAFGCEDASRTDPEELLELAEALAEAG 150 (237)
T ss_dssp HHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSE-EEEEETTTGGSSHHHHHHHHHHHHHHT
T ss_pred HHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCc-eEeCccccccccHHHHHHHHHHHHHcC
Confidence 9998888999999999999999999999999999999999999999999995 999999999999999999999999999
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
+++|+|+||+|.++|++++++|+.+++++|+ ++|++|+|||+|||+||+++|+++||++||+|++|||||+||++||
T Consensus 151 ~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~---~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le 227 (237)
T PF00682_consen 151 ADIIYLADTVGIMTPEDVAELVRALREALPD---IPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLE 227 (237)
T ss_dssp -SEEEEEETTS-S-HHHHHHHHHHHHHHSTT---SEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHH
T ss_pred CeEEEeeCccCCcCHHHHHHHHHHHHHhccC---CeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHH
Confidence 9999999999999999999999999999985 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 013498 328 EVVMAFKCR 336 (442)
Q Consensus 328 evv~~L~~~ 336 (442)
+++++|+.+
T Consensus 228 ~lv~~L~~~ 236 (237)
T PF00682_consen 228 ELVAALERM 236 (237)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhc
Confidence 999999875
No 32
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=100.00 E-value=1.5e-51 Score=416.64 Aligned_cols=252 Identities=24% Similarity=0.308 Sum_probs=219.5
Q ss_pred CceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCC-----------ChhHHHHHHHHHHHhcccccc
Q 013498 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAA-----------SKEDFEAVRTIAKEVGNAVDA 146 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~-----------~~~d~e~v~~l~~~~~~~~~~ 146 (442)
++|+|+|||||||+|++++.|+.++|++|++.|+++||+.||+||+.. ...++|.++.+.+..++.
T Consensus 2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~--- 78 (337)
T PRK08195 2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQA--- 78 (337)
T ss_pred CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCC---
Confidence 469999999999999999999999999999999999999999964310 112678888887665432
Q ss_pred cCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC
Q 013498 147 ESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE 226 (442)
Q Consensus 147 ~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e 226 (442)
....++..++++.+|+++++++ |++.|+++...++. +.+.++++++|++|++ |.++++
T Consensus 79 ---~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~-v~~~l~ 136 (337)
T PRK08195 79 ---KIAALLLPGIGTVDDLKMAYDA----GVRVVRVATHCTEA--------------DVSEQHIGLARELGMD-TVGFLM 136 (337)
T ss_pred ---EEEEEeccCcccHHHHHHHHHc----CCCEEEEEEecchH--------------HHHHHHHHHHHHCCCe-EEEEEE
Confidence 1112222345688999998875 89999998876653 3468899999999995 999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 227 dasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
++++++++++.++++.+.++|+++|+|+||+|.++|++++++|+.+++++++ +++|++|+|||+|||+||+++|+++|
T Consensus 137 ~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANslaAi~aG 214 (337)
T PRK08195 137 MSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKP--DTQVGFHGHNNLGLGVANSLAAVEAG 214 (337)
T ss_pred eccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCC--CCeEEEEeCCCcchHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999942 48899999999999999999999999
Q ss_pred CCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHH
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE 362 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~ 362 (442)
|++||+|++|||+|+||++||++++.|+.. |+++++|+++|.++++.+.+
T Consensus 215 a~~iD~Sl~GlG~~aGN~~tE~lv~~L~~~------g~~tgidl~~l~~~a~~~~~ 264 (337)
T PRK08195 215 ATRIDGSLAGLGAGAGNTPLEVLVAVLDRM------GWETGVDLYKLMDAAEDLVR 264 (337)
T ss_pred CCEEEecChhhcccccCccHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999875 77899999999999998764
No 33
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.7e-51 Score=439.73 Aligned_cols=297 Identities=21% Similarity=0.264 Sum_probs=258.5
Q ss_pred CceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEc--------cCCCChhHHHHHHHHHHHhcccccccC
Q 013498 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG--------FPAASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG--------~p~~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
++|.|+|||||||+|++ +..|++++|+.|++.|+++||+.||++ +|..++++|+.++.+++..++......
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml 82 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQML 82 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEE
Confidence 56999999999999999 689999999999999999999999994 455788899999999998776421110
Q ss_pred CccceEeeeccc----chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEE
Q 013498 149 GYVPVICGLSRC----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEF 223 (442)
Q Consensus 149 ~l~~~i~~~~r~----~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f 223 (442)
....++.+|++. ...+++.+++ +|++.|++|++.+|+ +++..++++||++|... +.+
T Consensus 83 ~Rg~n~vg~~~ypddvv~~~v~~a~~----~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 83 LRGQNLLGYRHYADDVVERFVERAVK----NGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred ecCcceeccccCcHHHHHHHHHHHHh----cCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEE
Confidence 112356788884 3445665555 599999999999984 56788999999999841 234
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
+.++..+.+++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+
T Consensus 145 ~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~GlA~An~laAi 220 (593)
T PRK14040 145 SYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD----VPLHLHCHATTGLSTATLLKAI 220 (593)
T ss_pred EEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC----CeEEEEECCCCchHHHHHHHHH
Confidence 444456778999999999999999999999999999999999999999999883 7899999999999999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhc
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHE 383 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~ 383 (442)
+|||++||+|++|||||+||++||+++++|+.. |+++++|+++|.+++++++++.
T Consensus 221 eAGa~~vD~ai~glG~~~Gn~~le~vv~~L~~~------~~~~gidl~~l~~is~~~~~v~------------------- 275 (593)
T PRK14040 221 EAGIDGVDTAISSMSMTYGHSATETLVATLEGT------ERDTGLDILKLEEIAAYFREVR------------------- 275 (593)
T ss_pred HcCCCEEEeccccccccccchhHHHHHHHHHhc------CCCcCCCHHHHHHHHHHHHHHH-------------------
Confidence 999999999999999999999999999999865 6789999999999999999876
Q ss_pred cCccccccccCCCCCCCCCccccCCCccccceEEecccccH--HHHHHHHHHcCCC
Q 013498 384 SGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKEVCQY 437 (442)
Q Consensus 384 sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~--~~v~~~l~e~G~~ 437 (442)
..|++|+|+..|..+ +++....+|. +++...|+++|..
T Consensus 276 ------------~~Y~~~~~~~~~~~~----~v~~~e~PGG~~Snl~~ql~~~g~~ 315 (593)
T PRK14040 276 ------------KKYAKFEGQLKGVDS----RILVAQVPGGMLTNMESQLKEQGAA 315 (593)
T ss_pred ------------HHhccCCcccccCcc----cEEEEcCCCchHHHHHHHHHHCCCH
Confidence 468999999999877 4999999999 9999999999985
No 34
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=100.00 E-value=5.7e-51 Score=411.64 Aligned_cols=248 Identities=25% Similarity=0.326 Sum_probs=218.3
Q ss_pred CceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCC-----------CChhHHHHHHHHHHHhcccccc
Q 013498 78 NYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPA-----------ASKEDFEAVRTIAKEVGNAVDA 146 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~-----------~~~~d~e~v~~l~~~~~~~~~~ 146 (442)
++|+|+|||||||+|++++.|+.++|++|++.|+++||+.||+|++. ....+++.++.+.+.+++.
T Consensus 1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~--- 77 (333)
T TIGR03217 1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRA--- 77 (333)
T ss_pred CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCC---
Confidence 35899999999999999999999999999999999999999996431 1123678888888765442
Q ss_pred cCCccceEeee---cccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Q 013498 147 ESGYVPVICGL---SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF 223 (442)
Q Consensus 147 ~~~l~~~i~~~---~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f 223 (442)
.+.+| .+++.+|++++.++ |++.|+++...++. +.+.+.++++|++|++ |.+
T Consensus 78 ------~~~~ll~pg~~~~~dl~~a~~~----gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~-v~~ 132 (333)
T TIGR03217 78 ------KVAVLLLPGIGTVHDLKAAYDA----GARTVRVATHCTEA--------------DVSEQHIGMARELGMD-TVG 132 (333)
T ss_pred ------EEEEEeccCccCHHHHHHHHHC----CCCEEEEEeccchH--------------HHHHHHHHHHHHcCCe-EEE
Confidence 23333 34688999988875 89999998877653 3467899999999995 999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
+++++++++++++.++++.+.++|+++|+|+||+|.++|++++++++.+++++++ +++|++|+|||+|||+||+++|+
T Consensus 133 ~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~--~i~ig~H~HnnlGla~ANslaAi 210 (333)
T TIGR03217 133 FLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKP--ETQVGFHAHHNLSLAVANSIAAI 210 (333)
T ss_pred EEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCC--CceEEEEeCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999863 48899999999999999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHH
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVE 361 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~ 361 (442)
++||++||+|++|||+|+||++||+++.+|+.. |+.+++|+.+|.++++.+-
T Consensus 211 ~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~~------g~~tgidl~~l~~~a~~~v 262 (333)
T TIGR03217 211 EAGATRIDASLRGLGAGAGNAPLEVFVAVLDRL------GWNTGCDLFKLMDAAEDIV 262 (333)
T ss_pred HhCCCEEEeecccccccccCccHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999875 6789999999999998654
No 35
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=4.3e-50 Score=420.27 Aligned_cols=279 Identities=19% Similarity=0.269 Sum_probs=239.8
Q ss_pred CCceEEEeCCCCcCCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEc----cCC----CChhHHHHHHHHHHHhccccccc
Q 013498 77 PNYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAE 147 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~g-~~fs~e~kl~ia~~L~~~GV~~IEvG----~p~----~~~~d~e~v~~l~~~~~~~~~~~ 147 (442)
+++|.|+|||||||+|+++ ..|++++|+.|++.|+++|++.||+| |+. .++++||.++.+++.++++
T Consensus 2 ~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt---- 77 (499)
T PRK12330 2 PRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS---- 77 (499)
T ss_pred CCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC----
Confidence 3579999999999999998 89999999999999999999999998 664 5678899999999987764
Q ss_pred CCccceEeeecc---------cc----hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 013498 148 SGYVPVICGLSR---------CN----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR 214 (442)
Q Consensus 148 ~~l~~~i~~~~r---------~~----~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar 214 (442)
.+..|+| .. +.+|+.+++ +|++.+++|+++||+ +++..+++.++
T Consensus 78 -----~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~----~Gidi~RIfd~lndv--------------~nl~~ai~~vk 134 (499)
T PRK12330 78 -----RLQMLLRGQNLLGYRHYEDEVVDRFVEKSAE----NGMDVFRVFDALNDP--------------RNLEHAMKAVK 134 (499)
T ss_pred -----eEEEEEcccccCCccCcchhHHHHHHHHHHH----cCCCEEEEEecCChH--------------HHHHHHHHHHH
Confidence 3455555 22 445555555 599999999999996 45556777778
Q ss_pred HcCCC---eEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCC
Q 013498 215 SLGCD---DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQND 291 (442)
Q Consensus 215 ~~G~~---~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HND 291 (442)
+.|.. .++|+. ....+++++.++++.+.++|+++|+|+||+|.++|.+++++|+.|++.+|+ +++|++|||||
T Consensus 135 ~ag~~~~~~i~yt~--sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~--~ipI~~H~Hnt 210 (499)
T PRK12330 135 KVGKHAQGTICYTV--SPIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGE--DTRINLHCHST 210 (499)
T ss_pred HhCCeEEEEEEEec--CCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCC--CCeEEEEeCCC
Confidence 88764 234432 457899999999999999999999999999999999999999999999962 48899999999
Q ss_pred cchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHH--------
Q 013498 292 LGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEY-------- 363 (442)
Q Consensus 292 lGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~-------- 363 (442)
+|||+||+++|+++||++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++
T Consensus 211 ~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~------g~~tgiDl~~L~~i~~~~~~vr~~y~~~~ 284 (499)
T PRK12330 211 TGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGT------GYTTKLDMDRLLKIRDHFKKVRPKYKEFE 284 (499)
T ss_pred CCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999965 788999999999999888776
Q ss_pred ---hCCCCCCCCc-cccchhhhhccCccccccc
Q 013498 364 ---TGLHVQPHKA-IVGANAFAHESGIHQDGML 392 (442)
Q Consensus 364 ---~g~~i~~~~p-ivG~~aF~h~sGiH~dg~l 392 (442)
.+......++ +.|...|.+++++|++|..
T Consensus 285 ~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~ 317 (499)
T PRK12330 285 SKTTGVETEIFKSQIPGGMLSNMESQLKQQGAG 317 (499)
T ss_pred ccccCCCCccccCCCCCCchhhHHHHHHHcChh
Confidence 2334445566 8999999999999999963
No 36
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=100.00 E-value=6.4e-50 Score=428.69 Aligned_cols=283 Identities=21% Similarity=0.292 Sum_probs=248.0
Q ss_pred EEeCCCCcCCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEc----c----CCCChhHHHHHHHHHHHhcccccccCCccc
Q 013498 82 VFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----F----PAASKEDFEAVRTIAKEVGNAVDAESGYVP 152 (442)
Q Consensus 82 I~DtTLRDG~Q~~g-~~fs~e~kl~ia~~L~~~GV~~IEvG----~----p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~ 152 (442)
|+|||||||+|+++ ..|++++|++|++.|+++||+.||+| | +..++++|+.++.+.+..++ .
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~---------~ 71 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPN---------T 71 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCC---------C
Confidence 68999999999984 69999999999999999999999997 3 44678899999999886544 2
Q ss_pred eEeeeccc-------------chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC
Q 013498 153 VICGLSRC-------------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD 219 (442)
Q Consensus 153 ~i~~~~r~-------------~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~ 219 (442)
.+.+|+|. .+.+++++++ +|++.+++|++.||. +++..+++++|++|+.
T Consensus 72 ~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~ 133 (582)
T TIGR01108 72 PLQMLLRGQNLLGYRHYADDVVERFVKKAVE----NGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAH 133 (582)
T ss_pred EEEEEEccccccccccCchhhHHHHHHHHHH----CCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCE
Confidence 45566663 2334555555 599999999999984 4677889999999985
Q ss_pred eEEEc--cCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 013498 220 DVEFS--PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (442)
Q Consensus 220 ~V~f~--~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A 297 (442)
|.++ ..+..+++++++.++++++.++|+++|+||||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+|
T Consensus 134 -v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~----~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 134 -AQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG----LPVHLHSHATTGMAEM 208 (582)
T ss_pred -EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC----CceEEEecCCCCcHHH
Confidence 6654 33455689999999999999999999999999999999999999999999985 6899999999999999
Q ss_pred HHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccc
Q 013498 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGA 377 (442)
Q Consensus 298 NalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~ 377 (442)
|+++|+++||++||+|++|||||+||++||+++.+|+.. |+++++|+++|.+++++++++
T Consensus 209 n~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~~------g~~tgid~~~L~~l~~~~~~v-------------- 268 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRGT------GYDTGLDIELLLEIAAYFREV-------------- 268 (582)
T ss_pred HHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHhc------CCCcccCHHHHHHHHHHHHHH--------------
Confidence 999999999999999999999999999999999999864 788999999999999999881
Q ss_pred hhhhhccCccccccccCCCCCCCCCccccCCCccccceEEecccccH--HHHHHHHHHcCCC
Q 013498 378 NAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKEVCQY 437 (442)
Q Consensus 378 ~aF~h~sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~--~~v~~~l~e~G~~ 437 (442)
.| .|++|+|+..|..+ ++++...+|. +++...|+++|+.
T Consensus 269 --------------~~---~Y~~~~~~~~~~~~----~v~~~e~pGG~~snl~~ql~~~g~~ 309 (582)
T TIGR01108 269 --------------RK---KYSQFEGQLKGPDS----RILVAQVPGGMLSNLESQLKEQNAL 309 (582)
T ss_pred --------------HH---HhhcCCCcccCCCc----cEEEEcCCCchHHHHHHHHHHCCCH
Confidence 12 58999999999876 4999999999 9999999999974
No 37
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=1.8e-49 Score=413.72 Aligned_cols=259 Identities=22% Similarity=0.283 Sum_probs=224.0
Q ss_pred CceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEc----cCC----CChhHHHHHHHHHHHhcccccccC
Q 013498 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG----~p~----~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
++|.|+|||||||+|++ +..|++++|++|++.|+++||+.||++ |+. .++++||.++.+.+..++......
T Consensus 2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l 81 (448)
T PRK12331 2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQML 81 (448)
T ss_pred CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46999999999999998 679999999999999999999999997 554 577899999999887655311111
Q ss_pred CccceEeeeccc----chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-eEEE
Q 013498 149 GYVPVICGLSRC----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-DVEF 223 (442)
Q Consensus 149 ~l~~~i~~~~r~----~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~-~V~f 223 (442)
.+.+++.||.+. ..++|+++++ +|++.|++|++.||.+ ++.++++++|++|.. .+.+
T Consensus 82 ~r~~N~~G~~~~pddvv~~~v~~A~~----~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 82 LRGQNLLGYRNYADDVVESFVQKSVE----NGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred eccccccccccCchhhHHHHHHHHHH----CCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEE
Confidence 234566777764 3456666655 5999999999999974 355689999999984 1345
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 224 SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 224 ~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
+.++..+++++++.++++.+.++|+|+|+|+||+|+++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+
T Consensus 144 ~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~----~pi~~H~Hnt~GlA~AN~laAi 219 (448)
T PRK12331 144 SYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT----VPLEVHTHATSGIAEMTYLKAI 219 (448)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC----CeEEEEecCCCCcHHHHHHHHH
Confidence 667778999999999999999999999999999999999999999999999884 7899999999999999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHh
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYT 364 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~ 364 (442)
++||++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++.
T Consensus 220 eaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~------g~~tgidl~~L~~~~~~~~~~r 274 (448)
T PRK12331 220 EAGADIIDTAISPFAGGTSQPATESMVAALQDL------GYDTGLDLEELSEIAEYFNPIR 274 (448)
T ss_pred HcCCCEEEeeccccCCCcCCHhHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875 7889999999999999998763
No 38
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=100.00 E-value=6.3e-49 Score=422.11 Aligned_cols=295 Identities=21% Similarity=0.255 Sum_probs=251.5
Q ss_pred CceEEEeCCCCcCCCCCC-CCCCHHHHHHHHHHHhHcCCCEEEEc----cCC----CChhHHHHHHHHHHHhcccccccC
Q 013498 78 NYVRVFDTTLRDGEQSPG-ATLTSKEKLDIARQLAKLGVDIIEAG----FPA----ASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~g-~~fs~e~kl~ia~~L~~~GV~~IEvG----~p~----~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
++|.|+|||||||.|+++ ..|++++|++|++.|+++|++.||++ |+. .++++|+.++.+++..++......
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l 81 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQML 81 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEE
Confidence 569999999999999996 68999999999999999999999997 432 467889999999987655311000
Q ss_pred CccceEeeeccc----chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-
Q 013498 149 GYVPVICGLSRC----NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF- 223 (442)
Q Consensus 149 ~l~~~i~~~~r~----~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f- 223 (442)
...+++.|+... .+.+++++++ +|++.|++|+++||+ +++..+++++|+.|.. |..
T Consensus 82 ~Rg~N~~gy~~ypd~vv~~~v~~A~~----~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~-v~~~ 142 (592)
T PRK09282 82 LRGQNLVGYRHYPDDVVEKFVEKAAE----NGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAH-VQGT 142 (592)
T ss_pred eccccccccccccchhhHHHHHHHHH----CCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCE-EEEE
Confidence 002233333322 2344555554 599999999999985 5677889999999984 553
Q ss_pred -ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 224 -SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 224 -~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
+..+..+++++++.++++.+.++|+++|+||||+|.++|.+++++|+.+++.++ ++|++|+|||.|||+||+++|
T Consensus 143 i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~----~pi~~H~Hnt~Gla~An~laA 218 (592)
T PRK09282 143 ISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD----LPVQLHSHCTSGLAPMTYLKA 218 (592)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC----CeEEEEEcCCCCcHHHHHHHH
Confidence 333456789999999999999999999999999999999999999999999984 789999999999999999999
Q ss_pred HHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhh
Q 013498 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAH 382 (442)
Q Consensus 303 l~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h 382 (442)
+++||++||+|++|||+|+||++||+++.+|+.. |+++++|+++|.+++++++++.
T Consensus 219 v~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~~------g~~~~idl~~l~~~s~~~~~~~------------------ 274 (592)
T PRK09282 219 VEAGVDIIDTAISPLAFGTSQPPTESMVAALKGT------PYDTGLDLELLFEIAEYFREVR------------------ 274 (592)
T ss_pred HHhCCCEEEeeccccCCCcCCHhHHHHHHHHHhC------CCCCccCHHHHHHHHHHHHHHH------------------
Confidence 9999999999999999999999999999999875 6789999999999999999876
Q ss_pred ccCccccccccCCCCCCCCCccccCCCccccceEEecccccH--HHHHHHHHHcCC
Q 013498 383 ESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKEVCQ 436 (442)
Q Consensus 383 ~sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~--~~v~~~l~e~G~ 436 (442)
..|++|+|+..|..+ +++....+|+ +++...|+++|+
T Consensus 275 -------------~~y~~~~~~~~~~~~----~v~~~~~pGg~~snl~~q~~~~g~ 313 (592)
T PRK09282 275 -------------KKYKQFESEFTIVDT----RVLIHQVPGGMISNLVSQLKEQNA 313 (592)
T ss_pred -------------HHhhcCCCccccCCc----cEEEEcCCCcHHHHHHHHHHHCCc
Confidence 468999999999877 4999999999 999999999998
No 39
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=2.2e-48 Score=406.27 Aligned_cols=260 Identities=20% Similarity=0.250 Sum_probs=217.9
Q ss_pred ceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEccCC--------CChhHHHHHHHHHHHhcccccccCC
Q 013498 79 YVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAESG 149 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~--------~~~~d~e~v~~l~~~~~~~~~~~~~ 149 (442)
+|.|+|||||||+|++ +..|++++|++|++.|+++||+.||+|.++ .++++||.++.+.+..++.......
T Consensus 2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~ 81 (467)
T PRK14041 2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLL 81 (467)
T ss_pred ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4899999999999999 489999999999999999999999996332 4677899999998875542110001
Q ss_pred ccceEeeecccchhh-HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--ccC
Q 013498 150 YVPVICGLSRCNERD-IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPE 226 (442)
Q Consensus 150 l~~~i~~~~r~~~~d-I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~e 226 (442)
+.+++.|| |...+| ++..++....+|++.|++|+++||+ +++..+++++|++|.. |.. +..
T Consensus 82 r~~N~~G~-~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~-v~~~i~~t 145 (467)
T PRK14041 82 RGQNLVGY-RHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAH-VQGAISYT 145 (467)
T ss_pred ccccccCc-ccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCE-EEEEEEec
Confidence 12333444 334566 3333444445699999999999984 5577889999999984 552 223
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 227 dasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
...+.+++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++|
T Consensus 146 ~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~----vpI~~H~Hnt~GlA~AN~laAieaG 221 (467)
T PRK14041 146 VSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG----VPVEVHSHCTTGLASLAYLAAVEAG 221 (467)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC----CceEEEecCCCCcHHHHHHHHHHhC
Confidence 345889999999999999999999999999999999999999999999984 7899999999999999999999999
Q ss_pred CCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHh
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYT 364 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~ 364 (442)
|++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++.
T Consensus 222 ad~vD~sv~~~g~gagN~atE~lv~~L~~~------g~~tgiDl~~L~~~~~~~~~vr 273 (467)
T PRK14041 222 ADMFDTAISPFSMGTSQPPFESMYYAFREN------GKETDFDRKALKFLVEYFTKVR 273 (467)
T ss_pred CCEEEeeccccCCCCCChhHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865 7889999999999999999864
No 40
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=100.00 E-value=9.8e-45 Score=376.97 Aligned_cols=267 Identities=19% Similarity=0.236 Sum_probs=223.1
Q ss_pred CCCceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEccCC--------CChhHHHHHHHHHHHhcccccc
Q 013498 76 DPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDA 146 (442)
Q Consensus 76 ~~~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~--------~~~~d~e~v~~l~~~~~~~~~~ 146 (442)
+.++|.|+|||||||.|+. ..+|++++++.|++.|+++|+..||++-.+ ..+++||.++.+++.++++..+
T Consensus 9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq 88 (468)
T PRK12581 9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ 88 (468)
T ss_pred cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence 4457999999999999996 567999999999999999999999995221 3467899999999998775221
Q ss_pred cCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEcc
Q 013498 147 ESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSP 225 (442)
Q Consensus 147 ~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~ 225 (442)
......++.|+.....+-++..++.....|++.+++|.+.+|+ +++..+++.+|+.|... +.++.
T Consensus 89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~--------------~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP--------------RNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH--------------HHHHHHHHHHHHcCCEEEEEEEE
Confidence 1011123344443333445666666667899999999998874 67788999999999851 23344
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 226 edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+.....+.+|+.++++.+.++|+++|+|+||+|.++|.+++++|+.+++. + +++|++|+|||+|||+||+++|+++
T Consensus 155 t~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~---~~pi~~H~Hnt~GlA~An~laAieA 230 (468)
T PRK12581 155 TTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-T---NLPLIVHTHATSGISQMTYLAAVEA 230 (468)
T ss_pred EeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c---CCeEEEEeCCCCccHHHHHHHHHHc
Confidence 55668899999999999999999999999999999999999999999985 3 3889999999999999999999999
Q ss_pred CCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCC
Q 013498 306 GARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (442)
Q Consensus 306 Ga~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~ 366 (442)
||++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++...
T Consensus 231 Gad~vD~ai~g~g~gagN~~tE~lv~~L~~~------g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 231 GADRIDTALSPFSEGTSQPATESMYLALKEA------GYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred CCCEEEeeccccCCCcCChhHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999975 788999999999999999987543
No 41
>PRK12999 pyruvate carboxylase; Reviewed
Probab=100.00 E-value=9.5e-45 Score=413.72 Aligned_cols=278 Identities=22% Similarity=0.233 Sum_probs=234.2
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEEcc--------CCCChhHHHHH
Q 013498 65 TRPEYIPNRIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEAGF--------PAASKEDFEAV 133 (442)
Q Consensus 65 ~~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~--GV~~IEvG~--------p~~~~~d~e~v 133 (442)
..|+-+-.|+-+.++|.|+|||||||+|++ +..|++++|+.|++.|+++ |++.||+|+ +..++++|+.+
T Consensus 518 ~g~~~~~~~~~~~~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl 597 (1146)
T PRK12999 518 LGPEGFADWLRDQKRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERL 597 (1146)
T ss_pred cCHHHHHHHHhccCCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHH
Confidence 366667777778899999999999999998 6999999999999999999 999999997 45677889999
Q ss_pred HHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHH
Q 013498 134 RTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFA 213 (442)
Q Consensus 134 ~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a 213 (442)
+.+++.+++...+......++++|.+...+-++..++....+|++.+++|++.+++ +++..+++.+
T Consensus 598 ~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~v 663 (1146)
T PRK12999 598 AELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAV 663 (1146)
T ss_pred HHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHH
Confidence 99999887642211111234555555433333333444445699999999999873 5567788888
Q ss_pred HHcCCC-eEEEccC----CCCC--CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEE
Q 013498 214 RSLGCD-DVEFSPE----DAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 214 r~~G~~-~V~f~~e----dasr--~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
++.|.. .++++.+ |.+| ++++|+.++++.+.++|+++|+|+||+|.++|.+++++|+.||+.++ ++|++
T Consensus 664 k~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~----ipi~~ 739 (1146)
T PRK12999 664 RETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD----LPIHL 739 (1146)
T ss_pred HHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC----CeEEE
Confidence 888853 2566666 7777 69999999999999999999999999999999999999999999983 78999
Q ss_pred eecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCC
Q 013498 287 HCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (442)
Q Consensus 287 H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~ 366 (442)
|+|||+|||+||+++|+++||++||+|++|||+|+||++||+++++|+.. |+++++|+++|.+++++++++-..
T Consensus 740 H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~~~------~~~t~idl~~l~~~s~~~~~~r~~ 813 (1146)
T PRK12999 740 HTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALEGT------ERDTGLDLDAIRKLSPYWEAVRPY 813 (1146)
T ss_pred EeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHHhc------CCCCCcCHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999964 678999999999999999987554
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=100.00 E-value=4e-43 Score=375.37 Aligned_cols=264 Identities=15% Similarity=0.166 Sum_probs=228.4
Q ss_pred CceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEccCC--------CChhHHHHHHHHHHHhcccccccC
Q 013498 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~--------~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
++|.|+|||||||.|+. ..+|++++.+.|++.|+++|+..||++..+ ..+++||.++.+++.++|+..+..
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL 81 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSML 81 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEE
Confidence 67999999999999976 689999999999999999999999997432 245679999999999888633221
Q ss_pred CccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCC
Q 013498 149 GYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPED 227 (442)
Q Consensus 149 ~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~ed 227 (442)
....++.||.....+-|+..++....+|++.+++|.+.+|+ +++...++.+|+.|... ..++...
T Consensus 82 ~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k~~G~~~~~~i~yt~ 147 (596)
T PRK14042 82 LRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIKSHKKHAQGAICYTT 147 (596)
T ss_pred eccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHHHcCCEEEEEEEecC
Confidence 12245778887776667777777677899999999999884 66778999999999852 1223334
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCC
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGA 307 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa 307 (442)
...++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++.++ ++|++|+|||+|||+||+++|+++||
T Consensus 148 sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~----ipi~~H~Hnt~Gla~an~laAieaGa 223 (596)
T PRK14042 148 SPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG----LPVHLHSHSTSGLASICHYEAVLAGC 223 (596)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC----CEEEEEeCCCCCcHHHHHHHHHHhCC
Confidence 56789999999999999999999999999999999999999999999874 78999999999999999999999999
Q ss_pred CEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhC
Q 013498 308 RQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (442)
Q Consensus 308 ~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g 365 (442)
++||+|++|||+|+||++||+++.+|+.. |+++++|+++|.+++++++++..
T Consensus 224 d~iD~ai~glGg~tGn~~tE~lv~~L~~~------g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 224 NHIDTAISSFSGGASHPPTEALVAALTDT------PYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred CEEEeccccccCCCCcHhHHHHHHHHHhc------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975 68899999999999999998643
No 43
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=100.00 E-value=9e-38 Score=355.37 Aligned_cols=276 Identities=21% Similarity=0.219 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCCCceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEEccCCC--------ChhHHHHHH
Q 013498 66 RPEYIPNRIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEAGFPAA--------SKEDFEAVR 134 (442)
Q Consensus 66 ~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~--GV~~IEvG~p~~--------~~~d~e~v~ 134 (442)
.|+-+-.|+-+.++|.|.|||||||.||. ..++++++.+.|++.++++ |+..+|+.-.+. .++.|+.++
T Consensus 517 g~~~~~~~~~~~~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~ 596 (1143)
T TIGR01235 517 GPEGFAEWVRNQKRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLE 596 (1143)
T ss_pred CHHHHHHHHHhcCCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHH
Confidence 56666667777789999999999999999 4789999999999999995 999999953322 345599999
Q ss_pred HHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 013498 135 TIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR 214 (442)
Q Consensus 135 ~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar 214 (442)
.+.+.++|...+......++.||.....+-|+..++.....|++.+++|.+.+| +++++.+++.+|
T Consensus 597 ~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~~ 662 (1143)
T TIGR01235 597 DLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAVA 662 (1143)
T ss_pred HHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHHH
Confidence 999999886443322345778888877777888888777889999999999988 477888999999
Q ss_pred HcCCC---eEEEcc--CCCC--CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 013498 215 SLGCD---DVEFSP--EDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (442)
Q Consensus 215 ~~G~~---~V~f~~--edas--r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H 287 (442)
+.|.. .++++. .|.. .++.+|+.++++.+.++|+++|+|+||+|.++|.++++||+.|++.++ ++|++|
T Consensus 663 ~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~----~pi~~H 738 (1143)
T TIGR01235 663 EAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTD----LPIHFH 738 (1143)
T ss_pred HcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcC----CeEEEE
Confidence 99984 134431 2333 468999999999999999999999999999999999999999999983 789999
Q ss_pred ecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhC
Q 013498 288 CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (442)
Q Consensus 288 ~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g 365 (442)
+|||+|||+||+++|+++||++||+|++|||++++++++|.++.+|+.. |+++++|+++|.+++++++++-.
T Consensus 739 ~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~------~~~tgidl~~l~~is~~~~~vr~ 810 (1143)
T TIGR01235 739 THDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGS------ERDPGLNVAWIRELSAYWEAVRN 810 (1143)
T ss_pred ECCCCCcHHHHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhC------CCCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875 67899999999999999998644
No 44
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=276.86 Aligned_cols=271 Identities=20% Similarity=0.341 Sum_probs=240.5
Q ss_pred CCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEcc---CCCChh---HHHHHHHHHHHhcccccccCC
Q 013498 76 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKE---DFEAVRTIAKEVGNAVDAESG 149 (442)
Q Consensus 76 ~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~---p~~~~~---d~e~v~~l~~~~~~~~~~~~~ 149 (442)
-|++|+|+++..|||.|......+++.|++++++|.++|+..||..+ |.+.|+ ..|.++.+.+..+.+
T Consensus 15 ~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~~~Gv~------ 88 (316)
T KOG2368|consen 15 APKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRKFPGVS------ 88 (316)
T ss_pred ccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhcCCCcc------
Confidence 46889999999999999999999999999999999999999999985 566665 246777766654332
Q ss_pred ccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-----eEEEc
Q 013498 150 YVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-----DVEFS 224 (442)
Q Consensus 150 l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~-----~V~f~ 224 (442)
.|++. .|.+.++.|+.+ |...|.+|-+.||.+...|.+++.+|.+.+..+.++.|+++++. .+.++
T Consensus 89 -yPVLt----PNlkGf~~Avaa----Ga~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvG 159 (316)
T KOG2368|consen 89 -YPVLT----PNLKGFEAAVAA----GAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVG 159 (316)
T ss_pred -ccccC----cchhhHHHHHhc----CceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEec
Confidence 13321 367778888765 88999999999999999999999999999999999999999875 24568
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 013498 225 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 225 ~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~ 304 (442)
++..+...|+.+.++.+.+.+.|+..|.|.||.|+.+|-.+.++++.+.+.+|. -.+.+||||++|.|+||.|.+++
T Consensus 160 CPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa---~~LAVH~HDTYGQALaNiL~slq 236 (316)
T KOG2368|consen 160 CPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPA---EKLAVHCHDTYGQALANILVSLQ 236 (316)
T ss_pred CCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCH---HHhhhhhhhhHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999999999999985 46999999999999999999999
Q ss_pred hCCCEEEeccccccc------ccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCC
Q 013498 305 AGARQVEVTINGIGE------RAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQP 370 (442)
Q Consensus 305 aGa~~vd~Tv~GlGe------raGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~ 370 (442)
.|++.+|.++.|||+ .+||+++|+++.+|+-. |++||+|+.+|.+..+++.+..|++-.+
T Consensus 237 mGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~Gl------G~~TgVnL~Klieag~fi~~algr~~~S 302 (316)
T KOG2368|consen 237 MGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGL------GLHTGVNLDKLIEAGDFICKALGRTTWS 302 (316)
T ss_pred hcceehhhhccccCCCCccccCCCCchHHHHHHHHhcC------CcccCcCHHHHHHHHHHHHHHhCCCchh
Confidence 999999999999997 77999999999999965 7899999999999999999999986543
No 45
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.2e-34 Score=289.46 Aligned_cols=299 Identities=21% Similarity=0.310 Sum_probs=246.8
Q ss_pred CceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHcCCCEEEEccCC--------CChhHHHHHHHHHHHhcccccccC
Q 013498 78 NYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKLGVDIIEAGFPA--------ASKEDFEAVRTIAKEVGNAVDAES 148 (442)
Q Consensus 78 ~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~--------~~~~d~e~v~~l~~~~~~~~~~~~ 148 (442)
+.|.|.|+|||||.|+. ..++++++.+.|++.||++|+..+|+.-.+ -+++.|+.+|.+.+.++|+..+..
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQML 83 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQML 83 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHH
Confidence 56999999999999998 679999999999999999999999995322 245569999999999888522211
Q ss_pred CccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--ccC
Q 013498 149 GYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPE 226 (442)
Q Consensus 149 ~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~e 226 (442)
....++.|+--...+-|+..++.....|++.+++|.+.+|+ +++..+++.+|+.|.. +.- +..
T Consensus 84 lRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h-~q~~i~YT 148 (472)
T COG5016 84 LRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAH-VQGTISYT 148 (472)
T ss_pred HccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCce-eEEEEEec
Confidence 11245666654444446666666667899999999999995 5667888999999984 322 221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 227 dasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
-..-++.++++++++++.++|+|.|+|.|..|+++|...++||+.+|+.++ ++|.+|||.+-|||.++.++|++||
T Consensus 149 ~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~----~pv~lHtH~TsG~a~m~ylkAvEAG 224 (472)
T COG5016 149 TSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP----VPVELHTHATSGMAEMTYLKAVEAG 224 (472)
T ss_pred cCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC----CeeEEecccccchHHHHHHHHHHhC
Confidence 234568899999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred CCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCCCCCCCCccccchhhhhccCc
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGLHVQPHKAIVGANAFAHESGI 386 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~~i~~~~pivG~~aF~h~sGi 386 (442)
||.||+++..|..+++.+++|.++.+|+.. ++++|+|++.|.++++++.++-.
T Consensus 225 vD~iDTAisp~S~gtsqP~tEtmv~aL~gt------~yDtgld~~~l~~~~~yf~~vrk--------------------- 277 (472)
T COG5016 225 VDGIDTAISPLSGGTSQPATETMVAALRGT------GYDTGLDLELLEEIAEYFREVRK--------------------- 277 (472)
T ss_pred cchhhhhhccccCCCCCCcHHHHHHHhcCC------CCCccccHHHHHHHHHHHHHHHH---------------------
Confidence 999999999999999999999999999975 67899999999999998876421
Q ss_pred cccccccCCCCC-CCCCccccCCCccccceEEecccccH--HHHHHHHHHcCC
Q 013498 387 HQDGMLKHKGTY-EIISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKEVCQ 436 (442)
Q Consensus 387 H~dg~lk~~~~Y-e~~~Pe~iG~~r~~~~~i~lg~~SG~--~~v~~~l~e~G~ 436 (442)
-| -.|+|+..|-.. ++++....|. +++...|+|.|.
T Consensus 278 ----------kY~~~~~~~~~~~d~----~ili~qvPGGMlSNl~sQLkeqna 316 (472)
T COG5016 278 ----------KYKGLLEPQAKGVDP----RILIYQVPGGMLSNLESQLKEQNA 316 (472)
T ss_pred ----------HHhhccCccccCCCC----cceEeeCChHHHHHHHHHHHHcch
Confidence 13 335777766443 5888888886 788888888875
No 46
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.90 E-value=2.4e-23 Score=221.26 Aligned_cols=277 Identities=21% Similarity=0.234 Sum_probs=222.8
Q ss_pred CCCCCCCCCCCCCCceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhHc--CCCEEEE-c-------cCCCChhHHHHH
Q 013498 65 TRPEYIPNRIPDPNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAKL--GVDIIEA-G-------FPAASKEDFEAV 133 (442)
Q Consensus 65 ~~~~~~~~~~~~~~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~~--GV~~IEv-G-------~p~~~~~d~e~v 133 (442)
..|+-+-.|+-+.+.|.+.|||+||+.|+. -.++.+.+...|+...+++ ..-.+|+ | +-.-.++.|+.+
T Consensus 521 ~GP~~fa~wvr~q~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL 600 (1149)
T COG1038 521 LGPEGFARWVREQKAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFLKEDPWERL 600 (1149)
T ss_pred hChHHHHHHHHhccceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHhccCHHHHH
Confidence 478888888888899999999999999998 4678899999999998876 3334555 1 111234569999
Q ss_pred HHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHH
Q 013498 134 RTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFA 213 (442)
Q Consensus 134 ~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a 213 (442)
+.+++.++|-+.+......+-.|+.....+-|+..++-....|+|.+++|.+.+. +++++-++..+
T Consensus 601 ~~lRk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV 666 (1149)
T COG1038 601 ERLRKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAV 666 (1149)
T ss_pred HHHHHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHH
Confidence 9999988874322211123445666555555665555445579999999998765 46677778888
Q ss_pred HHcCCC---eEEEcc--CCCC--CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEE
Q 013498 214 RSLGCD---DVEFSP--EDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 214 r~~G~~---~V~f~~--edas--r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
++.|.- .+|++. -|.. .++.+|+..+++++.++|+..+.+.|+.|.+.|...+.||++||+.+ ++||.+
T Consensus 667 ~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~----dlPIHl 742 (1149)
T COG1038 667 REAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV----DLPIHL 742 (1149)
T ss_pred HhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc----CCceEE
Confidence 888852 245543 2333 45889999999999999999999999999999999999999999998 389999
Q ss_pred eecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhC
Q 013498 287 HCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (442)
Q Consensus 287 H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g 365 (442)
|+|++-|.++|..++|++||+|.||+++..|.+-+..+++-.++.+|... ..++++|.+.+.+++.+++.+-.
T Consensus 743 HTHDTsG~~~at~~aA~~AGvDivD~A~~smsG~TSQPsl~si~~al~~~------~r~~~ld~~~~~~i~~YWe~vR~ 815 (1149)
T COG1038 743 HTHDTSGNGVATYLAAVEAGVDIVDVAMASMSGLTSQPSLNSIVAALAGT------ERDTGLDIEAVRELSFYWEAVRK 815 (1149)
T ss_pred eccCCCccHHHHHHHHHHcCCchhhhhhhhccCCCCCccHHHHHHHhcCC------CCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999854 35689999999999999998744
No 47
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=99.81 E-value=3.2e-19 Score=186.83 Aligned_cols=266 Identities=21% Similarity=0.247 Sum_probs=208.9
Q ss_pred CCceEEEeCCCCcCCCCC-CCCCCHHHHHHHHHHHhH--cCCCEEEEccCCC---------ChhHHHHHHHHHHHhcccc
Q 013498 77 PNYVRVFDTTLRDGEQSP-GATLTSKEKLDIARQLAK--LGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAV 144 (442)
Q Consensus 77 ~~~V~I~DtTLRDG~Q~~-g~~fs~e~kl~ia~~L~~--~GV~~IEvG~p~~---------~~~d~e~v~~l~~~~~~~~ 144 (442)
-+...|+|||.||..|+. ..+..+-+-..|+..-.. .|.-.+|. |.++ .+-.|+.++++.+.++|-.
T Consensus 557 ~~g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~-WGGATFDVamRFLhEcPWeRL~~lRkliPNIP 635 (1176)
T KOG0369|consen 557 HPGLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLEN-WGGATFDVAMRFLHECPWERLRELRKLIPNIP 635 (1176)
T ss_pred CCCceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhh-cCCchhhHHHHHHhcChHHHHHHHHHhCCCCc
Confidence 356889999999999997 456777777777766644 35666665 2222 2335999999999887731
Q ss_pred cccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC---eE
Q 013498 145 DAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD---DV 221 (442)
Q Consensus 145 ~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~---~V 221 (442)
-+......+-.+++....+-|....+..+..|++.+++|.+.+++ .++.--++.+++.|.- .+
T Consensus 636 FQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVEAai 701 (1176)
T KOG0369|consen 636 FQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVEAAI 701 (1176)
T ss_pred HHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEEEEE
Confidence 111011234456676666667666666677899999999998874 4444556777778753 23
Q ss_pred EEcc--CCCC--CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 013498 222 EFSP--EDAG--RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (442)
Q Consensus 222 ~f~~--edas--r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A 297 (442)
+++. -|.+ .++.+|+..+++.++++|...++|.|+.|.+.|+...-||..||+.+|+ +||.+|.|++-|-++|
T Consensus 702 ~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~Pd---lPiHvHtHDtsGagVA 778 (1176)
T KOG0369|consen 702 CYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPD---LPIHVHTHDTSGAGVA 778 (1176)
T ss_pred eeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCC---CceEEeccCCccHHHH
Confidence 4433 2444 4688999999999999999999999999999999999999999999995 8899999999999999
Q ss_pred HHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhCC
Q 013498 298 NTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTGL 366 (442)
Q Consensus 298 NalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g~ 366 (442)
.-+++.+||||.||+++..|.+=+..+++-.+++.|+-. -++++++++.+.+.+.++++.-..
T Consensus 779 sMlaca~AGADVVDvA~dSMSGmTSQPSmgA~vAsl~Gt------~~Dt~l~~~~v~eysaYWe~~R~L 841 (1176)
T KOG0369|consen 779 SMLACALAGADVVDVAVDSMSGMTSQPSMGALVASLQGT------PLDTGLNLEHVREYSAYWEQMRLL 841 (1176)
T ss_pred HHHHHHHcCCceeeeecccccccccCCchhhhhhhccCC------cccCCCchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999988877632 278999999999999999987554
No 48
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=99.71 E-value=1.9e-25 Score=226.22 Aligned_cols=225 Identities=14% Similarity=-0.014 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
++.+.+.+...+++++++.+. .+.+.++++.|.++++...+.......+++.+.++||+|.+.|.+++-.....+. .|
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~-~v~~~~e~a~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~-~p 167 (344)
T TIGR02146 90 FGTSKLLRIAEHRSDAKSILE-SARETIEYAKSAGLEVRFSAEDTFRSELADLLSIYETVGVFGVDRVGIADTVGKA-AP 167 (344)
T ss_pred EecCHHHHHHHhCCCHHHHHH-HHHHHHHHHHHCCCeEEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCcC-CH
Confidence 333444444444444444443 1334444444444433333333333333444455555555555443322222111 12
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCc-cCCCChhHHHHH
Q 013498 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGL-YTGINTRHIVMA 356 (442)
Q Consensus 278 ~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~-~tgidl~~L~~l 356 (442)
. ++...+|+|||.|++++|++.+...|+..+..|++|+|+|+||++++ +..|..+ .|. +..+++..|..+
T Consensus 168 ~--~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s--~~glG~~-----~G~~~l~~~~~~L~~~ 238 (344)
T TIGR02146 168 R--QVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTT--VLGIGER-----NGITPLGGILARLYYH 238 (344)
T ss_pred H--HHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEE--eeeeeCC-----CCCccHHHHHHHHHHh
Confidence 1 36688999999999999999999999999999999999999999996 3333332 131 234556666666
Q ss_pred HHHHHHHhCCCCCCCCccccchhhhhccCccccccccCCCCCCCCCccccCCCccccceEEecccccHHHHHHHHHHcCC
Q 013498 357 SKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIGLERSSEAGIVLGKLSGRHALKDRLKEVCQ 436 (442)
Q Consensus 357 s~~v~~~~g~~i~~~~pivG~~aF~h~sGiH~dg~lk~~~~Ye~~~Pe~iG~~r~~~~~i~lg~~SG~~~v~~~l~e~G~ 436 (442)
+.++...++..++.++|++|.+.|.|++|+|++|..+++.+|++++|+.+|+++. +.++++||...+++++...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~----y~~~~~s~~g~~~~~~~~~~~ 314 (344)
T TIGR02146 239 TPMYVYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRT----YEFLPPEVFGRKRHILIARLT 314 (344)
T ss_pred cCCCccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCccc----CCCCCHHHcCCcceEeeeccc
Confidence 6555444666788899999999999999999999999999999999999998875 999999999999888877765
Q ss_pred C
Q 013498 437 Y 437 (442)
Q Consensus 437 ~ 437 (442)
.
T Consensus 315 g 315 (344)
T TIGR02146 315 G 315 (344)
T ss_pred c
Confidence 4
No 49
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.53 E-value=2.2e-06 Score=90.16 Aligned_cols=171 Identities=21% Similarity=0.252 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc---hhhHHHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN---ERDIKTAWEAVK 173 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~---~~dI~~a~e~l~ 173 (442)
..+.++++++++.+.+.|++.||+|+|..+....+.++.+.+..+. +.+....++. ..+++.++++
T Consensus 12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~~---------~~ii~D~kl~d~g~~~v~~a~~a-- 80 (430)
T PRK07028 12 LLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFPD---------HTIVADMKTMDTGAIEVEMAAKA-- 80 (430)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCCC---------CEEEEEeeeccchHHHHHHHHHc--
Confidence 4688999999999999999999999876555567788888775321 2344443332 3467777664
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
|.+.|++....++. .+.+.++++++.|.. +.+++. ...++. +.++.+.+.|+|.|.+
T Consensus 81 --GAdgV~v~g~~~~~---------------~~~~~i~~a~~~G~~-~~~g~~-s~~t~~----e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 81 --GADIVCILGLADDS---------------TIEDAVRAARKYGVR-LMADLI-NVPDPV----KRAVELEELGVDYINV 137 (430)
T ss_pred --CCCEEEEecCCChH---------------HHHHHHHHHHHcCCE-EEEEec-CCCCHH----HHHHHHHhcCCCEEEE
Confidence 89998876433321 235678889999985 665321 111222 2356677889999976
Q ss_pred cCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 254 PDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 254 aDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
. .|. ..+....+.++.+++.++ ++|.+|+ |....|...++++||+.|=
T Consensus 138 ~--pg~~~~~~~~~~~~~l~~l~~~~~----iPI~a~G----GI~~~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 138 H--VGIDQQMLGKDPLELLKEVSEEVS----IPIAVAG----GLDAETAAKAVAAGADIVI 188 (430)
T ss_pred E--eccchhhcCCChHHHHHHHHhhCC----CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence 5 222 122233457777777653 6788888 9999999999999999864
No 50
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.17 E-value=0.00021 Score=70.36 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccceEee
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+++... . .|.+ .
T Consensus 22 ~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-------~-~plv-~ 92 (256)
T TIGR00262 22 TLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-------N-IPIG-L 92 (256)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------C-CCEE-E
Confidence 567789999999999999999999976541 1 233444433200 1 1211 2
Q ss_pred ecccch---hhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCH
Q 013498 157 LSRCNE---RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (442)
Q Consensus 157 ~~r~~~---~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~ 233 (442)
+.=.|. -++++.++..+.+|++.+-+..- -.+...+.++.++++|+..+.+.. .-++.
T Consensus 93 m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~---P~T~~ 153 (256)
T TIGR00262 93 LTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVA---PNADD 153 (256)
T ss_pred EEeccHHhhhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEEC---CCCCH
Confidence 222232 34556666666779988765421 124566788999999986443322 23455
Q ss_pred HHHHHHHHHHHHcC-CcEEeccCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 234 KFLYEILGEVIKVG-ATTLNIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 234 ~~l~~~~~~~~~~G-ad~I~laDT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.+..+++.. .| +-.+......|.- .+.++.++++.+|+..+. .+.+++..++ -.++-.++++||+.|
T Consensus 154 eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~--pi~vgfGI~~-----~e~~~~~~~~GADgv 224 (256)
T TIGR00262 154 ERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK--PVLVGFGISK-----PEQVKQAIDAGADGV 224 (256)
T ss_pred HHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC--CEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 6666665542 12 2333445677763 567799999999997642 2555544443 557778889999875
No 51
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=98.15 E-value=0.00043 Score=69.80 Aligned_cols=223 Identities=20% Similarity=0.132 Sum_probs=132.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc---CCCChhH-HHHHHHHHHHhcccccccCCccceEeeecccc--------hh
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCN--------ER 163 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~---p~~~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~--------~~ 163 (442)
..++.|+.++.++...+.|++.|-+.. |....+. .+.++.|.+..+ ...+.++++.. .-
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~---------~i~~~~~s~~e~~~~~~~~g~ 104 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFP---------DVHIHAFSPMEVYFLAKNEGL 104 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCC---------CceEEecCHHHHHHHHHHcCC
Confidence 468999999999999999999887742 3211111 234444444321 12344444311 11
Q ss_pred hHHHHHHHHHhCCCCEEE-EeecCChHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIH-TFIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~-i~~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
..+..++.++++|++++. .-.-+.+-.+.+++ +.+.++. .+.++.|++.|++ ++.++.-+---+++...+.
T Consensus 105 ~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~----l~~i~~a~~~Gi~-~~s~~iiG~~Et~ed~~~~ 179 (309)
T TIGR00423 105 SIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW----LEVIKTAHRLGIP-TTATMMFGHVENPEHRVEH 179 (309)
T ss_pred CHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ceeeEEecCCCCHHHHHHH
Confidence 124456677788998774 22222222333333 2354444 4788999999996 5444333323467778888
Q ss_pred HHHHHHcCCcEEec----------cCcc-------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 240 LGEVIKVGATTLNI----------PDTV-------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 240 ~~~~~~~Gad~I~l----------aDT~-------G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
+..+.+.+.+...+ .+|- ...+|.+..++++..|=.+|.+..+..++ +.+|.-. +..+
T Consensus 180 l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~---~~l~~~~--~~~~ 254 (309)
T TIGR00423 180 LLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW---VKLGLKL--AQVA 254 (309)
T ss_pred HHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc---hhcCHHH--HHHH
Confidence 88888887653221 2552 23678899999998887777544455554 4455332 4788
Q ss_pred HHhCCCEEEecccc-----c-ccccC-cccHHHHHHHHHhcc
Q 013498 303 ACAGARQVEVTING-----I-GERAG-NASLEEVVMAFKCRG 337 (442)
Q Consensus 303 l~aGa~~vd~Tv~G-----l-GeraG-Na~lEevv~~L~~~g 337 (442)
+.+||+-+++|+.. . |...+ ..+.+++...++..|
T Consensus 255 l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g 296 (309)
T TIGR00423 255 LEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAG 296 (309)
T ss_pred HhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcC
Confidence 99999999988632 1 11112 245677766666554
No 52
>PLN02591 tryptophan synthase
Probab=98.12 E-value=0.00042 Score=68.00 Aligned_cols=175 Identities=18% Similarity=0.180 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEe
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~-~i~ 155 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+++.. . +| .++
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~--------~-~p~ilm 84 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQL--------S-CPIVLF 84 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--------C-CCEEEE
Confidence 567789999999999999999999977551 1 22222222110 1 23 334
Q ss_pred eecccc-hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~r~~-~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
++.-.. .-.+++.++..+++|++.+-+.. .. +++..+..+.++++|+..|.+-. .-++.+
T Consensus 85 ~Y~N~i~~~G~~~F~~~~~~aGv~GviipD------------LP----~ee~~~~~~~~~~~gl~~I~lv~---Ptt~~~ 145 (250)
T PLN02591 85 TYYNPILKRGIDKFMATIKEAGVHGLVVPD------------LP----LEETEALRAEAAKNGIELVLLTT---PTTPTE 145 (250)
T ss_pred ecccHHHHhHHHHHHHHHHHcCCCEEEeCC------------CC----HHHHHHHHHHHHHcCCeEEEEeC---CCCCHH
Confidence 443211 23778878878888999876542 11 35667889999999997554432 234455
Q ss_pred HHHHHHHHHHHcC-CcEEeccCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 235 FLYEILGEVIKVG-ATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 235 ~l~~~~~~~~~~G-ad~I~laDT~G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.+.++++.. .| +..|...-++|. ..|.++.++++.+|+.. +. .+-++|-.++ -.++-..++.|||.+
T Consensus 146 ri~~ia~~~--~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~-Pv~vGFGI~~-----~e~v~~~~~~GADGv 215 (250)
T PLN02591 146 RMKAIAEAS--EGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DK-PVAVGFGISK-----PEHAKQIAGWGADGV 215 (250)
T ss_pred HHHHHHHhC--CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CC-ceEEeCCCCC-----HHHHHHHHhcCCCEE
Confidence 565555442 12 233344556666 56899999999999964 32 2445543333 346666778889885
No 53
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=98.11 E-value=0.00031 Score=71.66 Aligned_cols=223 Identities=17% Similarity=0.100 Sum_probs=133.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEc---cCCCChhHH-HHHHHHHHHhcccccccCCccceEeeeccc--------chh
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAG---FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRC--------NER 163 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG---~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~--------~~~ 163 (442)
..++.++.++.++.+.+.|++.|-+. .|....+.+ +.++.|.+.... + .+.++++. +--
T Consensus 70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~-i--------~~~~~s~~ei~~~~~~~g~ 140 (340)
T TIGR03699 70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH-I--------HIHSFSPVEIVYIAKKEGL 140 (340)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-c--------CCCCCCHHHHHHHhccCCC
Confidence 35899999999999999999988883 332222222 355655543211 0 11111111 100
Q ss_pred hHHHHHHHHHhCCCCEEEEe--ecCChHHHHHHh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIHTF--IATSGIHMEHKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~--~~~Sd~h~~~~l--~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
..+..++.++.+|++++.-. -..++-..+.-. +.|.++. .+.++.+++.|++ ++.+..-+---+++.+.+.
T Consensus 141 ~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~-v~~~~iiGlgEt~ed~~~~ 215 (340)
T TIGR03699 141 SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLP-TTATMMFGHVETLEDRIEH 215 (340)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ccceeEeeCCCCHHHHHHH
Confidence 11445666777899877521 113333232211 2355544 5789999999996 5544433334456778888
Q ss_pred HHHHHHcCCcEEec----------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 240 LGEVIKVGATTLNI----------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 240 ~~~~~~~Gad~I~l----------aDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
++.+.+.+++.+.+ .+|- ...+|.+..+.++..|-.+|++..+.-++ ..+|.. ....|+.+
T Consensus 216 l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~---~~~g~~--~~~~~l~~ 290 (340)
T TIGR03699 216 LERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW---VTQGKE--VGQLALHF 290 (340)
T ss_pred HHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc---cccChH--HHHHHHhc
Confidence 88888888765222 2432 34688999999999998888643333443 223433 35678999
Q ss_pred CCCEEEeccc--ccccccCccc---HHHHHHHHHhcc
Q 013498 306 GARQVEVTIN--GIGERAGNAS---LEEVVMAFKCRG 337 (442)
Q Consensus 306 Ga~~vd~Tv~--GlGeraGNa~---lEevv~~L~~~g 337 (442)
||+-+++|+. ++-..+|... +++++..++..|
T Consensus 291 Gan~~~g~~~~~~~~~~~g~~~~~~~~~~~~~i~~~g 327 (340)
T TIGR03699 291 GANDFGSTMLEENVVAAAGATHRASREEIIRIIREAG 327 (340)
T ss_pred CCccCCCccccccccccCCCCCCCCHHHHHHHHHHcC
Confidence 9999998875 3333555444 577777776654
No 54
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.10 E-value=0.00027 Score=72.58 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=133.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHH----HHHHHHHHHhcccccccCCccceEeeeccc--------chh
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC--------NER 163 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~--------~~~ 163 (442)
..++.|+.++.++...+.|++.|-+.+......++ +.++.|.+..++ ..+.+++.. ...
T Consensus 77 y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~---------i~i~~~~~~ei~~~~~~~g~ 147 (351)
T TIGR03700 77 YAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD---------LHVKAFTAVEIHHFSKISGL 147 (351)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEeCCHHHHHHHHHHcCC
Confidence 34899999999999999999988774321111123 345555443211 123333211 011
Q ss_pred hHHHHHHHHHhCCCCEEE-EeecC-ChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIH-TFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~-i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~ 241 (442)
..+..++.++++|++++. .-.-+ ++. ...++..+ ....++..+.++.|+++|++ ++-++..+---++++.++.+.
T Consensus 148 ~~~e~l~~LkeAGld~~~~~g~E~~~~~-v~~~i~~~-~~~~~~~l~~i~~a~~~Gi~-~~sg~i~GlgEt~edrv~~l~ 224 (351)
T TIGR03700 148 PTEEVLDELKEAGLDSMPGGGAEIFAEE-VRQQICPE-KISAERWLEIHRTAHELGLK-TNATMLYGHIETPAHRVDHML 224 (351)
T ss_pred CHHHHHHHHHHcCCCcCCCCcccccCHH-HHhhcCCC-CCCHHHHHHHHHHHHHcCCC-cceEEEeeCCCCHHHHHHHHH
Confidence 123446667778998875 21111 232 22334322 11234555789999999996 544433333345677888888
Q ss_pred HHHHcCCcE------Eec----cCcc------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 242 EVIKVGATT------LNI----PDTV------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 242 ~~~~~Gad~------I~l----aDT~------G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
.+.+.+++. |-+ .+|- ...+|.+..+.++..|=.+|++.+++..|=.- |. ..+..++.+
T Consensus 225 ~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~w~~~---~~--~~~~~~L~~ 299 (351)
T TIGR03700 225 RLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAYWVML---GL--KLAQVALAF 299 (351)
T ss_pred HHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccccccc---CH--HHHHHHHhc
Confidence 888877653 333 2443 45788999999998887777655555544332 43 345889999
Q ss_pred CCCEEEecccc--------cccccCcccHHHHHHHHHhcc
Q 013498 306 GARQVEVTING--------IGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 306 Ga~~vd~Tv~G--------lGeraGNa~lEevv~~L~~~g 337 (442)
||+-+.+|+.. -.++. ..+.+++...++..|
T Consensus 300 Gand~ggt~~~e~v~~~~g~~~~~-~~~~~~l~~~i~~~g 338 (351)
T TIGR03700 300 GVNDLDGTVVEEKIGHDAGAKSPQ-ALSKDELVRLIRDAG 338 (351)
T ss_pred CCCCCCccCccceeeccccCCCCC-CCCHHHHHHHHHHcC
Confidence 99999888752 22221 356777777777654
No 55
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.09 E-value=0.00024 Score=70.16 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=110.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEe
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~-~i~ 155 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++++++.. . .| .++
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~--------~-~p~vlm 97 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEI--------K-APIVIF 97 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC--------C-CCEEEE
Confidence 568889999999999999999999977551 1 22233322110 1 23 334
Q ss_pred eecccc-hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~r~~-~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
++--.. .-++++.++..+.+|++.|-+..- + +++..+..+.++++|+..|.+-. .-++.+
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P--------------~ee~~~~~~~~~~~gi~~I~lv~---PtT~~e 158 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDL--P--------------YEESDYLISVCNLYNIELILLIA---PTSSKS 158 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCC--C--------------HHHHHHHHHHHHHcCCCEEEEEC---CCCCHH
Confidence 433211 236777777667789998765321 1 24566888999999997555433 234556
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEE
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQV 310 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-ANalaAl~aGa~~v 310 (442)
.+..+++... -=+-.+...=++|. ..|.++.++++.+|+.+. .||.+ ++|-.. .++-...++|||.|
T Consensus 159 ri~~i~~~a~-gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~----~Pi~v----GFGI~~~e~~~~~~~~GADGv 228 (263)
T CHL00200 159 RIQKIARAAP-GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN----KPIIL----GFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHHHHHHhCC-CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC----CCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence 6655554431 01233344666676 668899999999999763 45554 567763 35556677889875
No 56
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.98 E-value=0.00067 Score=69.39 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=128.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEc---cCCCChhH-HHHHHHHHHHhcccccccCCccceEeeeccc--------chh
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAG---FPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC--------NER 163 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG---~p~~~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~--------~~~ 163 (442)
..++.|+.++.++.+.+.|++.|-+. .|....+. .+.++.|.+..+. ..++++++. .-.
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~---------i~~~~~t~~ei~~~~~~~g~ 138 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG---------MHIHAFSPMEVYYGARNSGL 138 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC---------ceEEecCHHHHHHHHHHcCC
Confidence 45899999999999999999988774 23221211 2445555443211 123332211 001
Q ss_pred hHHHHHHHHHhCCCCEEEE-eecCChHHHHHHhCC---CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKLRK---TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i-~~~~Sd~h~~~~l~~---s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
..+..++.++++|++++.. .....+-.+.+++.. +.++ ..+.++.++++|++ ++-+...+.--+.+...+.
T Consensus 139 ~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~----~~~~i~~a~~~Gi~-v~s~~i~G~~Et~ed~~~~ 213 (343)
T TIGR03551 139 SVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAE----WIEIIKTAHKLGIP-TTATIMYGHVETPEHWVDH 213 (343)
T ss_pred CHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHH----HHHHHHHHHHcCCc-ccceEEEecCCCHHHHHHH
Confidence 1234566677789998761 111111122233332 4444 35789999999996 4333322222456777788
Q ss_pred HHHHHHcCCcE------Eecc----Ccc--------cccCHHHHHHHHHHHHHhCCCC-cceeEEEeecCCcchHHHHHH
Q 013498 240 LGEVIKVGATT------LNIP----DTV--------GITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 240 ~~~~~~~Gad~------I~la----DT~--------G~~~P~~v~~li~~l~~~~p~~-~~v~i~~H~HNDlGLA~ANal 300 (442)
+..+.+.+.+. |-+. .|- ..+.|.+.-++|+..|=.+|+. ..+.-++ ..+|.. -..
T Consensus 214 l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~---~~l~~~--~~~ 288 (343)
T TIGR03551 214 LLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW---VKLGKK--LAQ 288 (343)
T ss_pred HHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc---cccCHH--HHH
Confidence 88888777653 2222 332 2357889999999888878863 2355555 345543 337
Q ss_pred HHHHhCCCEEEecccc------cccccC-cccHHHHHHHHHhcc
Q 013498 301 AGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCRG 337 (442)
Q Consensus 301 aAl~aGa~~vd~Tv~G------lGeraG-Na~lEevv~~L~~~g 337 (442)
.++.+||+-+++|+.. -|...+ ..++++++..++..|
T Consensus 289 ~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g 332 (343)
T TIGR03551 289 VALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAG 332 (343)
T ss_pred HHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcC
Confidence 8899999999998754 111111 135677777666554
No 57
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.96 E-value=0.001 Score=65.51 Aligned_cols=159 Identities=21% Similarity=0.242 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEe
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~-~i~ 155 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+++... . .| .++
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~-------~-~p~vlm 95 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDP-------T-IPIVLM 95 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------C-CCEEEE
Confidence 567889999999999999999999976541 1 233333331100 1 13 233
Q ss_pred eecccc-hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLSRCN-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~r~~-~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
++.-.. .-++++.++.++++|++.+.+. | .. ++++.+.++.++++|+..|.|.. ..++.+
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviip----D--------Lp----~ee~~~~~~~~~~~gl~~I~lva---p~t~~e 156 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIP----D--------LP----PEEAEELRAAAKKHGLDLIFLVA---PTTTDE 156 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEEC----C--------CC----HHHHHHHHHHHHHcCCcEEEEeC---CCCCHH
Confidence 433221 2367777787888899988763 2 11 35677889999999997665443 234455
Q ss_pred HHHHHHHHHHHcCCcEEec---cCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecC
Q 013498 235 FLYEILGEVIKVGATTLNI---PDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQN 290 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~l---aDT~G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HN 290 (442)
.+..+++. ...-||+ .=++|. ..|..+.++++.+++..+ . .+.+++..+|
T Consensus 157 ri~~i~~~----s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~-~-pv~vGfGI~~ 211 (258)
T PRK13111 157 RLKKIASH----ASGFVYYVSRAGVTGARSADAADLAELVARLKAHTD-L-PVAVGFGIST 211 (258)
T ss_pred HHHHHHHh----CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC-C-cEEEEcccCC
Confidence 55544433 4445555 334454 567889999999999653 2 2556654444
No 58
>PRK08445 hypothetical protein; Provisional
Probab=97.94 E-value=0.0016 Score=66.98 Aligned_cols=222 Identities=15% Similarity=0.075 Sum_probs=132.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE-c-cCCCChhH--HHHHHHHHHHhcccccccCCccceEeeecccchh--------
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA-G-FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------- 163 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv-G-~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~-------- 163 (442)
..++.++.++.++...+.|.+.|=+ | -+...+-+ .+.++.|.+..+. ..+.+++....+
T Consensus 71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~---------i~~~a~s~~ei~~~a~~~~~ 141 (348)
T PRK08445 71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPT---------ITIHGFSAVEIDYIAKISKI 141 (348)
T ss_pred eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC---------cEEEEccHHHHHHHHHHhCC
Confidence 4579999999999999999986643 2 22111111 2344444443221 133444332111
Q ss_pred hHHHHHHHHHhCCCCEEE-EeecCChHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIH-TFIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~-i~~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
..+..++.++++|++++. +-.-+.+-....++ +.|.++. .+.++.|+++|++ ++-++..+.--+++...+.
T Consensus 142 ~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~-~~sg~i~G~~Et~edr~~~ 216 (348)
T PRK08445 142 SIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMK-STATMMFGTVENDEEIIEH 216 (348)
T ss_pred CHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCe-eeeEEEecCCCCHHHHHHH
Confidence 124566778889999874 42333333333444 5676665 4789999999996 5544333333456666677
Q ss_pred HHHHHHcCCcE-----E-----eccCcc--------cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 240 LGEVIKVGATT-----L-----NIPDTV--------GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 240 ~~~~~~~Gad~-----I-----~laDT~--------G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
+..+.+...+. + .-.+|- ..++|.+.-++++..|=.+|++.+++.++. .+|..++ ..
T Consensus 217 l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~~---~~g~~~~--~~ 291 (348)
T PRK08445 217 WERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSWV---TQGSYIG--QL 291 (348)
T ss_pred HHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCCc---ccCHHHH--HH
Confidence 76666665432 2 223332 138889988998888877776445666662 4566554 78
Q ss_pred HHHhCCCEEEeccccc------ccccCcccHHHHHHHHHhcc
Q 013498 302 GACAGARQVEVTINGI------GERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 302 Al~aGa~~vd~Tv~Gl------GeraGNa~lEevv~~L~~~g 337 (442)
|+.+||+-+++|+..= |...| .+.|+++..++..|
T Consensus 292 ~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g 332 (348)
T PRK08445 292 ALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIG 332 (348)
T ss_pred HHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcC
Confidence 8999999999998640 11112 24566666665544
No 59
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.67 E-value=0.0072 Score=58.95 Aligned_cols=176 Identities=15% Similarity=0.169 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChh-H----H------------HHHHHHHHHhcccccccCCccceE-eeecc
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D----F------------EAVRTIAKEVGNAVDAESGYVPVI-CGLSR 159 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d----~------------e~v~~l~~~~~~~~~~~~~l~~~i-~~~~r 159 (442)
-+.++-.++++.|++. +|.||+|+|.+.|- | . +.++.+++.. -.|.+ .+..-
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~---------~~Pl~lM~y~n 84 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDV---------SVPIILMTYLE 84 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccC---------CCCEEEEEecc
Confidence 3678889999999998 99999999876651 1 1 2223332211 12321 12211
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~ 239 (442)
....+.+..++.++.+|++.|.+..-.- |..+...+.+++++++|++ +.+.. ...++.+.+..+
T Consensus 85 ~~~~~~~~~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~-~~~~v--~p~T~~e~l~~~ 148 (244)
T PRK13125 85 DYVDSLDNFLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLK-PVFFT--SPKFPDLLIHRL 148 (244)
T ss_pred hhhhCHHHHHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCC-EEEEE--CCCCCHHHHHHH
Confidence 1234556656666678999877642110 1124456788999999997 43332 234566666655
Q ss_pred HHHHHHcCCcEEec--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCCCEE
Q 013498 240 LGEVIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 310 (442)
Q Consensus 240 ~~~~~~~Gad~I~l--aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL-A~ANalaAl~aGa~~v 310 (442)
++. .-..+++ --..|.-.+..+.+.++.+++..++ .+|. -|.|. ...|.-.++++||+.+
T Consensus 149 ~~~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~---~~i~----v~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 149 SKL----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGN---KYLV----VGFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred HHh----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCC---CCEE----EeCCcCCHHHHHHHHHcCCCEE
Confidence 543 3334433 2223666788899999999998753 2333 24666 3455556679999976
No 60
>PRK08444 hypothetical protein; Provisional
Probab=97.66 E-value=0.0044 Score=63.86 Aligned_cols=251 Identities=15% Similarity=0.120 Sum_probs=142.2
Q ss_pred CCCCCCCCCCceEEEeCCC----CcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHH----HHHHHHHHh
Q 013498 69 YIPNRIPDPNYVRVFDTTL----RDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFE----AVRTIAKEV 140 (442)
Q Consensus 69 ~~~~~~~~~~~V~I~DtTL----RDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e----~v~~l~~~~ 140 (442)
|..|.+-+...+-..||.. |+-.......++.|+.++.++...+.|++.|-+-.....+.+++ .++.|.+..
T Consensus 47 ~~~n~~In~TN~C~~~C~FCaf~~~~~~~~~y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~ 126 (353)
T PRK08444 47 FNVNRHINPTNICADVCKFCAFSAHRKNPNPYTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAY 126 (353)
T ss_pred EEecCCcccccccccCCccCCCccCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHC
Confidence 4433333334455556544 32221223569999999999999999999887632111111333 444444432
Q ss_pred cccccccCCccceEeeecccc--------hhhHHHHHHHHHhCCCCEEEE-eecCChHHHHHHhC--CCHHHHHHHHHHH
Q 013498 141 GNAVDAESGYVPVICGLSRCN--------ERDIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKLR--KTKQQVVEIARSM 209 (442)
Q Consensus 141 ~~~~~~~~~l~~~i~~~~r~~--------~~dI~~a~e~l~~~g~~~v~i-~~~~Sd~h~~~~l~--~s~~e~l~~~~~~ 209 (442)
+. ..+++|+..- ...++..++.++++|++++.- -..+.+-....++. +.. -++..+.
T Consensus 127 p~---------i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~---~~~~~~i 194 (353)
T PRK08444 127 PN---------LHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVS---SERWLEI 194 (353)
T ss_pred CC---------ceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCC---HHHHHHH
Confidence 11 2355543221 123445667778889887642 01111111222221 222 2334467
Q ss_pred HHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE------Eec----cCcc----cccCHHHHHHHHHHHHHh
Q 013498 210 VKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT------LNI----PDTV----GITMPTEFGKLIADIKAN 275 (442)
Q Consensus 210 v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~------I~l----aDT~----G~~~P~~v~~li~~l~~~ 275 (442)
.+.|+++|++ ++-++..+.--++++.++.+..+.+...+. |-+ .+|- ...+|.+.-++++..|=.
T Consensus 195 ~~~a~~~Gi~-~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~ 273 (353)
T PRK08444 195 HKYWHKKGKM-SNATMLFGHIENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRIL 273 (353)
T ss_pred HHHHHHcCCC-ccceeEEecCCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHh
Confidence 7889999996 544444444456777778888888876553 223 3442 247888888888888776
Q ss_pred CCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc--cccccC-----cccHHHHHHHHHhcc
Q 013498 276 TPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING--IGERAG-----NASLEEVVMAFKCRG 337 (442)
Q Consensus 276 ~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G--lGeraG-----Na~lEevv~~L~~~g 337 (442)
+|++++++..| .-++...+..|+.+||+-+++|+.. +-.-+| ..+.+++...++..|
T Consensus 274 L~~i~ni~a~w-----~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g 337 (353)
T PRK08444 274 LDNIPHIKAYW-----ATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSG 337 (353)
T ss_pred cCCCCcccccc-----ccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcC
Confidence 76543333322 1244677889999999999999742 111233 456677777776554
No 61
>PRK07360 FO synthase subunit 2; Reviewed
Probab=97.65 E-value=0.0062 Score=63.07 Aligned_cols=221 Identities=20% Similarity=0.130 Sum_probs=131.2
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEcc---CCCC-hhH-HHHHHHHHHHhcccccccCCccceEeeecc--------cc
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAAS-KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSR--------CN 161 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~---p~~~-~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r--------~~ 161 (442)
...++.|+.++.++.+.+.|+..|-+.. |... .+. .+.++.+.+..+. ..+++++. ..
T Consensus 88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~---------i~i~a~s~~ei~~~~~~~ 158 (371)
T PRK07360 88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD---------IHLHAFSPMEVYFAARED 158 (371)
T ss_pred CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC---------cceeeCCHHHHHHHHhhc
Confidence 3468999999999999999999988742 3221 111 2344444432111 12333321 00
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCCh----HHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSG----IHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd----~h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
-.-.+..++.++++|+++++ .++. -.+.+++ +.+.++. .+.++.|+++|++ ++-+...+---+++
T Consensus 159 G~~~~e~l~~LkeAGld~~~---~t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~-~~sg~i~G~gEt~e 230 (371)
T PRK07360 159 GLSYEEVLKALKDAGLDSMP---GTAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLP-TTSTMMYGHVETPE 230 (371)
T ss_pred CCCHHHHHHHHHHcCCCcCC---CcchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCC-ceeeEEeeCCCCHH
Confidence 11123456667788999875 2222 1222222 2354444 5789999999996 55443333334678
Q ss_pred HHHHHHHHHHHcCCcE------Eec---------cCcccc---cCHHHHHHHHHHHHHhCCC-CcceeEEEeecCCcchH
Q 013498 235 FLYEILGEVIKVGATT------LNI---------PDTVGI---TMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLS 295 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~------I~l---------aDT~G~---~~P~~v~~li~~l~~~~p~-~~~v~i~~H~HNDlGLA 295 (442)
..++.+..+.+.+++. |-+ .+.... ..|.+.-+.|+..|=.+|+ ...++-++ +.+|..
T Consensus 231 drv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~---~~lg~~ 307 (371)
T PRK07360 231 HRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW---VKLGLK 307 (371)
T ss_pred HHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc---eeeCHH
Confidence 8888888888887765 322 222211 4688888888888877886 22344444 234433
Q ss_pred HHHHHHHHHhCCCEEEecccc------cccccC-cccHHHHHHHHHhcc
Q 013498 296 TANTIAGACAGARQVEVTING------IGERAG-NASLEEVVMAFKCRG 337 (442)
Q Consensus 296 ~ANalaAl~aGa~~vd~Tv~G------lGeraG-Na~lEevv~~L~~~g 337 (442)
-...++.+||+-+.+++.+ -|.... ..+++++...++..|
T Consensus 308 --~~~~~l~~Gan~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~i~~~G 354 (371)
T PRK07360 308 --LAQVALNCGANDLGGTLMEEHITKMAGASGGTYMSVEELQWMIKSIG 354 (371)
T ss_pred --HHHHHHhcCCccCcCcCcccceecccCCCCCCCCCHHHHHHHHHHcC
Confidence 3466899999999888765 232222 256777777777664
No 62
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.52 E-value=0.0022 Score=63.20 Aligned_cols=173 Identities=24% Similarity=0.328 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEe
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~-~i~ 155 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+.+.-.+ .| .++
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~--------~pivlm 93 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPD--------IPIVLM 93 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTS--------SEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCC--------CCEEEE
Confidence 467889999999999999999999977541 1 2334444421111 12 233
Q ss_pred eeccc-chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLSRC-NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~r~-~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
++--. -..++++.++..+.+|++.+-+. --+ ++...+..+.+++.|+..|.|-. ..++.+
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIip--DLP--------------~ee~~~~~~~~~~~gl~~I~lv~---p~t~~~ 154 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIP--DLP--------------PEESEELREAAKKHGLDLIPLVA---PTTPEE 154 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEET--TSB--------------GGGHHHHHHHHHHTT-EEEEEEE---TTS-HH
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEc--CCC--------------hHHHHHHHHHHHHcCCeEEEEEC---CCCCHH
Confidence 33311 12456666666666788876653 222 13334566778899986555533 335566
Q ss_pred HHHHHHHHHHHcCCcEEec---cCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 235 FLYEILGEVIKVGATTLNI---PDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~l---aDT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
.+.++++.. -.-||+ .-++|.- .|.++.++++.+|+... . .+-+| +|....--...+..|||.
T Consensus 155 Ri~~i~~~a----~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~-~-Pv~vG------FGI~~~e~~~~~~~~aDG 222 (259)
T PF00290_consen 155 RIKKIAKQA----SGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTD-L-PVAVG------FGISTPEQAKKLAAGADG 222 (259)
T ss_dssp HHHHHHHH-----SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTS-S--EEEE------SSS-SHHHHHHHHTTSSE
T ss_pred HHHHHHHhC----CcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcC-c-ceEEe------cCCCCHHHHHHHHccCCE
Confidence 666555443 344554 5555654 57899999999999873 2 25555 566666666777788887
Q ss_pred E
Q 013498 310 V 310 (442)
Q Consensus 310 v 310 (442)
|
T Consensus 223 v 223 (259)
T PF00290_consen 223 V 223 (259)
T ss_dssp E
T ss_pred E
Confidence 6
No 63
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0058 Score=60.24 Aligned_cols=149 Identities=21% Similarity=0.222 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H---------------------HHHHHHHHHHhcccccccCCccc-eEe
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D---------------------FEAVRTIAKEVGNAVDAESGYVP-VIC 155 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d---------------------~e~v~~l~~~~~~~~~~~~~l~~-~i~ 155 (442)
+.+.-+++++.|.+.|+|.||+|+|.+.|- | ++.++.+.+.- .-+| .++
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~--------~~~Pivlm 100 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKG--------VKVPIVLM 100 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--------CCCCEEEE
Confidence 578889999999999999999999976541 1 23333333221 0112 223
Q ss_pred eecc-cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLSR-CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~r-~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
++.- .-..+++..++..+++|++.+-+.. -+ .+...+..+.++++|+..|.+.. .-++.+
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD--LP--------------~ee~~~~~~~~~~~gi~~I~lva---Ptt~~~ 161 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPD--LP--------------PEESDELLKAAEKHGIDPIFLVA---PTTPDE 161 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCC--CC--------------hHHHHHHHHHHHHcCCcEEEEeC---CCCCHH
Confidence 3321 1235677777777788999876532 22 24445677888899997666654 335556
Q ss_pred HHHHHHHHHHHcC-CcEEeccCcccccCH--HHHHHHHHHHHHhC
Q 013498 235 FLYEILGEVIKVG-ATTLNIPDTVGITMP--TEFGKLIADIKANT 276 (442)
Q Consensus 235 ~l~~~~~~~~~~G-ad~I~laDT~G~~~P--~~v~~li~~l~~~~ 276 (442)
.+.++++... | +.-+...=++|.-.| ..+.++++.+|+..
T Consensus 162 rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 204 (265)
T COG0159 162 RLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT 204 (265)
T ss_pred HHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc
Confidence 6655554331 2 455666677788777 34899999999976
No 64
>PRK07094 biotin synthase; Provisional
Probab=97.45 E-value=0.019 Score=57.94 Aligned_cols=197 Identities=20% Similarity=0.137 Sum_probs=119.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEc--c-CCCChhH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAG--F-PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG--~-p~~~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
..++.++.++.++.+.+.|++.|-+. . |....++ .+.++.+.+.. ++...+. ......+. ++.
T Consensus 68 ~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~--------~l~i~~~-~g~~~~e~----l~~ 134 (323)
T PRK07094 68 YRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKEL--------DVAITLS-LGERSYEE----YKA 134 (323)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccC--------CceEEEe-cCCCCHHH----HHH
Confidence 34799999999999999999988774 2 2222222 23344443321 1111111 11123333 344
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcE
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~ 250 (442)
++.+|++++.+-+-+.+-....++++. ...+...+.++.+++.|+. |..++.-+ ..-+.+.+.+.++.+.+.+++.
T Consensus 135 Lk~aG~~~v~~glEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~-v~~~~iiGlpget~ed~~~~l~~l~~l~~~~ 211 (323)
T PRK07094 135 WKEAGADRYLLRHETADKELYAKLHPG--MSFENRIACLKDLKELGYE-VGSGFMVGLPGQTLEDLADDILFLKELDLDM 211 (323)
T ss_pred HHHcCCCEEEeccccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-ecceEEEECCCCCHHHHHHHHHHHHhCCCCe
Confidence 566799999876655544445556542 2345667889999999985 54333222 1345688889999999999886
Q ss_pred Eec------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeE--EEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 251 LNI------PDTV----GITMPTEFGKLIADIKANTPGIENVVI--STHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 251 I~l------aDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i--~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
+.+ ++|- ....+.++.++++..|-.+|+.. ++. ++-++...| ...++.+||+.+=.++
T Consensus 212 v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~-i~~~~~~~~~~~~~-----~~~~l~~Gan~~~~~~ 281 (323)
T PRK07094 212 IGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDAN-IPATTALGTLNPDG-----REKGLKAGANVVMPNL 281 (323)
T ss_pred eeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCC-CcccCCccccCchh-----HHHHHHcCCceecCCC
Confidence 544 2221 23567888899999998888531 322 443443333 2489999999875544
No 65
>PRK15108 biotin synthase; Provisional
Probab=97.39 E-value=0.071 Score=54.77 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=134.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC--hhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS--KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~--~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~ 174 (442)
.++.++.++.++.+.+.|++.|-+|.-... ..+++.+..+.+.++.. ++ ..+...+... +..++.+++
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~-----~i-~v~~s~G~ls----~e~l~~Lke 144 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAM-----GL-ETCMTLGTLS----ESQAQRLAN 144 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhC-----CC-EEEEeCCcCC----HHHHHHHHH
Confidence 378999999999999999999866522112 23455555555544321 12 1222223223 334555677
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc--CCcEEe
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV--GATTLN 252 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~--Gad~I~ 252 (442)
+|++++++.+-+++-+-. ++.. ...++.-.+.++.+++.|+. ++.++..+---++++.++.+..+.+. .++.|.
T Consensus 145 AGld~~n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~-v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip 220 (345)
T PRK15108 145 AGLDYYNHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIK-VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVP 220 (345)
T ss_pred cCCCEEeeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCc-eeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEE
Confidence 899999998877654332 2211 12345566788999999985 66544333334567788888888888 445443
Q ss_pred ------ccCc-c---cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc-ccccc
Q 013498 253 ------IPDT-V---GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING-IGERA 321 (442)
Q Consensus 253 ------laDT-~---G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G-lGera 321 (442)
+..| . ..+.|.+..+.|...|=.+|+.. +.+..-. ...|- -....|+.+||+.+ -+++ +=...
T Consensus 221 ~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~-i~i~~g~-~~~~~--~~~~~~l~~Gan~~--~~g~~~ltt~ 294 (345)
T PRK15108 221 INMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSY-VRLSAGR-EQMNE--QTQAMCFMAGANSI--FYGCKLLTTP 294 (345)
T ss_pred eCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCce-eeecccH-hHhCh--hhHHHHHHcCCcEE--EECCccccCC
Confidence 2355 1 24688999999999988888521 3333222 11121 24688999999998 2222 11334
Q ss_pred CcccHHHHHHHHHhcc
Q 013498 322 GNASLEEVVMAFKCRG 337 (442)
Q Consensus 322 GNa~lEevv~~L~~~g 337 (442)
| .+.++.+..++..|
T Consensus 295 g-~~~~~~~~~i~~~g 309 (345)
T PRK15108 295 N-PEEDKDLQLFRKLG 309 (345)
T ss_pred C-CCHHHHHHHHHHcC
Confidence 5 57888888888775
No 66
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.38 E-value=0.01 Score=55.95 Aligned_cols=170 Identities=19% Similarity=0.228 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchh--hHHHHHHHHHhC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER--DIKTAWEAVKYA 175 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~--dI~~a~e~l~~~ 175 (442)
.+.++-+++++.| +-|++.||+|++-..+.-.+.++.+++..++. ..++..--.+.. +++.+.+ +
T Consensus 9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~--------~i~~d~k~~d~~~~~~~~~~~----~ 75 (206)
T TIGR03128 9 LDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDR--------KVLADLKTMDAGEYEAEQAFA----A 75 (206)
T ss_pred CCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCC--------EEEEEEeeccchHHHHHHHHH----c
Confidence 5789999999999 88999999997655454467788887753221 122222111222 3444444 5
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc-
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP- 254 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la- 254 (442)
|.+.|.+...... ..+.+++++++++|+. +...+... .+ ..+.++.+.+.|+|.+.+.
T Consensus 76 Gad~i~vh~~~~~---------------~~~~~~i~~~~~~g~~-~~~~~~~~-~t----~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 76 GADIVTVLGVADD---------------ATIKGAVKAAKKHGKE-VQVDLINV-KD----KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred CCCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEecCC-CC----hHHHHHHHHHcCCCEEEEcC
Confidence 8887765433221 2345688889999985 55432111 12 2234445567799988774
Q ss_pred ----CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 255 ----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 255 ----DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
++.+...+ +.++.+++.++. .++.+ +-|.-.-|.-..+++||+.+-+
T Consensus 135 g~~~~~~~~~~~----~~i~~l~~~~~~---~~i~v----~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 135 GLDEQAKGQNPF----EDLQTILKLVKE---ARVAV----AGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CcCcccCCCCCH----HHHHHHHHhcCC---CcEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 12222233 345556655553 22332 2355556777889999998744
No 67
>PLN02389 biotin synthase
Probab=97.31 E-value=0.04 Score=57.34 Aligned_cols=218 Identities=17% Similarity=0.104 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEcc---CCCC-hhHHHHHHHHHHHhcccccccCCccceEe-eecccchhhHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGF---PAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEA 171 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~---p~~~-~~d~e~v~~l~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e~ 171 (442)
.++.++.++.++.+.+.|++.|-++. .... +.+++.+..+.+.+... + +.++ ..+-... ..++.
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~-----~--l~i~~s~G~l~~----E~l~~ 183 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGM-----G--MEVCCTLGMLEK----EQAAQ 183 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcC-----C--cEEEECCCCCCH----HHHHH
Confidence 58999999999999999999886641 1122 23455555555544321 1 1232 1111223 34455
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc--CCc
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV--GAT 249 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~--Gad 249 (442)
++++|++++...+-+++-+.. ++..+ ..++...+.++.+++.|+. |+.++..+---+++...+.+..+.+. .++
T Consensus 184 LkeAGld~~~~~LeTs~~~y~-~i~~~--~s~e~rl~ti~~a~~~Gi~-v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~ 259 (379)
T PLN02389 184 LKEAGLTAYNHNLDTSREYYP-NVITT--RSYDDRLETLEAVREAGIS-VCSGGIIGLGEAEEDRVGLLHTLATLPEHPE 259 (379)
T ss_pred HHHcCCCEEEeeecCChHHhC-CcCCC--CCHHHHHHHHHHHHHcCCe-EeEEEEECCCCCHHHHHHHHHHHHhcccCCc
Confidence 677899999887776653222 22211 1345556788999999995 65444333334567777778888777 456
Q ss_pred EEec------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccc-c
Q 013498 250 TLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI-G 318 (442)
Q Consensus 250 ~I~l------aDT----~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~Gl-G 318 (442)
.|.| +.| ....+|.+..+.|...|=.+|+.. +.+..-. - -+..-....|+.+||+-+=+ +++ =
T Consensus 260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~-i~i~~gr-~--~l~~~~~~~~l~~GAN~~~~--g~~~L 333 (379)
T PLN02389 260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAM-VRLSAGR-V--RFSMAEQALCFLAGANSIFT--GDKLL 333 (379)
T ss_pred EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCcc-ccccccc-c--ccChhHHHHHHHhCCCEEEE--CCccc
Confidence 5553 255 235788999999999988887521 2222111 1 11223357899999988632 111 1
Q ss_pred cccCcccHHHHHHHHHhc
Q 013498 319 ERAGNASLEEVVMAFKCR 336 (442)
Q Consensus 319 eraGNa~lEevv~~L~~~ 336 (442)
.-.|+..-++ ...++..
T Consensus 334 tt~g~~~~~d-~~~~~~l 350 (379)
T PLN02389 334 TTPNNDFDAD-QAMFKEL 350 (379)
T ss_pred CCCCCChHHH-HHHHHHc
Confidence 2234444444 4555554
No 68
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.29 E-value=0.084 Score=48.48 Aligned_cols=179 Identities=15% Similarity=0.110 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc----hhhHHHHHHHHHh
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN----ERDIKTAWEAVKY 174 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~----~~dI~~a~e~l~~ 174 (442)
+.+.-.++++.|.+.|++.|++.. +.++.+.+..... .+|.+++.+-.. .++.....+..+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~~~~~------~~~v~~~v~~~~~~~~~~~~~~~a~~a~~ 76 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADALAGS------DVPVIVVVGFPTGLTTTEVKVAEVEEAID 76 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHHhCCC------CCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 788899999999999999999963 4566555543220 234455444333 2332222233355
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-ccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f-~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
+|.+.+.+..+.. .....+.++.++.+.+.++.+ +.++. +.+ .....+ .+++.+.++++.+.+.|++.|.
T Consensus 77 ~Gad~i~v~~~~~-----~~~~~~~~~~~~~~~~i~~~~-~~~~p-v~iy~~p~~~-~~~~~~~~~~~~~~~~g~~~iK- 147 (201)
T cd00945 77 LGADEIDVVINIG-----SLKEGDWEEVLEEIAAVVEAA-DGGLP-LKVILETRGL-KTADEIAKAARIAAEAGADFIK- 147 (201)
T ss_pred cCCCEEEEeccHH-----HHhCCCHHHHHHHHHHHHHHh-cCCce-EEEEEECCCC-CCHHHHHHHHHHHHHhCCCEEE-
Confidence 6999887654321 111112566666666666655 45665 433 222222 4788888888888888988764
Q ss_pred cCccccc----CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 254 PDTVGIT----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 254 aDT~G~~----~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
++.|.. ....+.++.+.+ +. ++++.+-+-.+ ...+...++.+||+.+
T Consensus 148 -~~~~~~~~~~~~~~~~~i~~~~----~~--~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 148 -TSTGFGGGGATVEDVKLMKEAV----GG--RVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred -eCCCCCCCCCCHHHHHHHHHhc----cc--CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 666643 556665555443 21 13344444333 2567788888898875
No 69
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.22 E-value=0.018 Score=53.88 Aligned_cols=167 Identities=23% Similarity=0.262 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccch--hhHHHHHHHHHhC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE--RDIKTAWEAVKYA 175 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~--~dI~~a~e~l~~~ 175 (442)
.+.++-+++++.|.+. ++.||+|.|.....-.+.++.+.+...+ .+.+..+.-.+. ..++.+ ..+
T Consensus 10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g~~~i~~i~~~~~~--------~~i~~~~~v~~~~~~~~~~~----~~a 76 (202)
T cd04726 10 LDLEEALELAKKVPDG-VDIIEAGTPLIKSEGMEAVRALREAFPD--------KIIVADLKTADAGALEAEMA----FKA 76 (202)
T ss_pred CCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhCHHHHHHHHHHCCC--------CEEEEEEEeccccHHHHHHH----Hhc
Confidence 5788999999999999 9999999876444346777777765221 122332222222 123333 446
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec-c
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI-P 254 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l-a 254 (442)
|.+.+.+.....+ +...++++++++.|+. +.+.+ .+-.+++.+. + +...|+|.+.+ .
T Consensus 77 Gad~i~~h~~~~~---------------~~~~~~i~~~~~~g~~-~~v~~--~~~~t~~e~~---~-~~~~~~d~v~~~~ 134 (202)
T cd04726 77 GADIVTVLGAAPL---------------STIKKAVKAAKKYGKE-VQVDL--IGVEDPEKRA---K-LLKLGVDIVILHR 134 (202)
T ss_pred CCCEEEEEeeCCH---------------HHHHHHHHHHHHcCCe-EEEEE--eCCCCHHHHH---H-HHHCCCCEEEEcC
Confidence 9998776543321 2345678889999985 44321 1112344333 2 55679998776 2
Q ss_pred ----CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 255 ----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 255 ----DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.+.| .....+.++.+++. ++ +++.+= -|-...|.-.++++||+.+
T Consensus 135 ~~~~~~~~---~~~~~~~i~~~~~~-~~---~~i~~~----GGI~~~~i~~~~~~Gad~v 183 (202)
T cd04726 135 GIDAQAAG---GWWPEDDLKKVKKL-LG---VKVAVA----GGITPDTLPEFKKAGADIV 183 (202)
T ss_pred cccccccC---CCCCHHHHHHHHhh-cC---CCEEEE----CCcCHHHHHHHHhcCCCEE
Confidence 2333 12334555555543 22 345443 3555678899999999986
No 70
>PRK05927 hypothetical protein; Provisional
Probab=97.20 E-value=0.016 Score=59.73 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-hHHH----HHHHHHHHhcccccccCCccc-eEeeecccchhhHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK-EDFE----AVRTIAKEVGNAVDAESGYVP-VICGLSRCNERDIKTAW 169 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-~d~e----~v~~l~~~~~~~~~~~~~l~~-~i~~~~r~~~~dI~~a~ 169 (442)
..++.++.++.++...+.|+..|-+... ..| .+++ .++.|.+..+. +.-. .+.+ .|.-+++..-.-.+..+
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG-~~p~~~~e~~~~~i~~ik~~~p~-l~~~-~~s~~ei~~~~~~~G~~~~e~l 150 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGG-VHPQLGIDYLEELVRITVKEFPS-LHPH-FFSAVEIAHAAQVSGISTEQAL 150 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCC-CCCCCCHHHHHHHHHHHHHHCCC-Cccc-CCCHHHHHHHHHhcCCCHHHHH
Confidence 4789999999999999999998777422 112 2344 44444443211 1000 1111 11101111122234456
Q ss_pred HHHHhCCCCEEEE-eecCChHHHHHHhC--C-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHT-FIATSGIHMEHKLR--K-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (442)
Q Consensus 170 e~l~~~g~~~v~i-~~~~Sd~h~~~~l~--~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~ 245 (442)
+.++++|++.+.= -.-+++-+...+.. + +.++.+ +.++.|+++|++ ++-++..+.--+++..++.+..+.+
T Consensus 151 ~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl----~~i~~A~~lGi~-~~sg~l~G~gEt~e~ri~~l~~Lr~ 225 (350)
T PRK05927 151 ERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWI----QFHKLAHRLGFR-STATMMFGHVESPEDILLHLQTLRD 225 (350)
T ss_pred HHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHH----HHHHHHHHcCCC-cCceeEEeeCCCHHHHHHHHHHHHH
Confidence 6677789875541 22233333333332 2 445555 578899999996 4333322223345666666666666
Q ss_pred cCCcE--Ee--cc------Ccc---c---ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 246 VGATT--LN--IP------DTV---G---ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 246 ~Gad~--I~--la------DT~---G---~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
.+-+. |. |+ +|- . ..+|.+.-++++..|-.+|++..+. + .-+.++.--+..|+.+||+-
T Consensus 226 lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~i~----~-~w~~~G~~~~q~~L~~GanD 300 (350)
T PRK05927 226 AQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDHIA----A-SWFGEGKEEGAKGLHYGADD 300 (350)
T ss_pred hhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCccc----C-CccccCHHHHHHHHhCCCcc
Confidence 54211 11 23 442 1 4889999999998888787532111 1 12234445667899999999
Q ss_pred EEeccc
Q 013498 310 VEVTIN 315 (442)
Q Consensus 310 vd~Tv~ 315 (442)
+.+|+.
T Consensus 301 lggt~~ 306 (350)
T PRK05927 301 FGGTIL 306 (350)
T ss_pred ccCCCc
Confidence 988863
No 71
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=97.16 E-value=0.25 Score=49.08 Aligned_cols=219 Identities=14% Similarity=0.055 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv---G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
..+.++.++.++.+.+.|+..+-+ |+......-.+.++.+.+..... ++.. ....+..+++. ++.++
T Consensus 61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~-----~i~~-~~~~g~~~~e~----l~~Lk 130 (296)
T TIGR00433 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEM-----GLKT-CATLGLLDPEQ----AKRLK 130 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhC-----CCeE-EecCCCCCHHH----HHHHH
Confidence 356788899999999999987533 44322222144555555432210 1211 11112234333 44556
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
++|++.+.+.+-.++- ...+++.. ..++...++++.+++.|+. |..+...+-..+.+.+.+.++.+.+.|++.+.+
T Consensus 131 ~aG~~~v~i~~E~~~~-~~~~i~~~--~s~~~~~~ai~~l~~~Gi~-v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l 206 (296)
T TIGR00433 131 DAGLDYYNHNLDTSQE-FYSNIIST--HTYDDRVDTLENAKKAGLK-VCSGGIFGLGETVEDRIGLALALANLPPESVPI 206 (296)
T ss_pred HcCCCEEEEcccCCHH-HHhhccCC--CCHHHHHHHHHHHHHcCCE-EEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 6799998887665542 33344321 2345666788999999985 543322222335678889999999999886642
Q ss_pred ------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCc
Q 013498 254 ------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGN 323 (442)
Q Consensus 254 ------aDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGN 323 (442)
+.|. ....+++..+++...+..+|.. .+.+. +=--.-+.---..-|+.+||+.+- ++|+=.-.|+
T Consensus 207 ~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~-~i~~~--~~~~~~~~~~~~~~~l~~G~n~i~--~g~~~~~~g~ 281 (296)
T TIGR00433 207 NFLVKIKGTPLADNKELSADDALKTIALARIIMPKA-EIRLA--GGREVNMRELQQAMCFMAGANSIF--VGDYLTTTGN 281 (296)
T ss_pred eeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcc-eEEEe--CCcchhhhhhHHHHHHHhcCceEE--EcCcccCCCC
Confidence 2442 2345678889999999999852 13221 111111111112237999999875 3555557788
Q ss_pred ccH-HHHHHHHHh
Q 013498 324 ASL-EEVVMAFKC 335 (442)
Q Consensus 324 a~l-Eevv~~L~~ 335 (442)
..- |++ ..++.
T Consensus 282 ~~~~~~~-~~~~~ 293 (296)
T TIGR00433 282 PEEDKDK-KLLAK 293 (296)
T ss_pred CCcHHHH-HHHHH
Confidence 877 544 44443
No 72
>PRK05926 hypothetical protein; Provisional
Probab=97.16 E-value=0.022 Score=59.14 Aligned_cols=200 Identities=15% Similarity=0.096 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChh-HHH----HHHHHHHHhcccccccCCccceEeeecc--------cc
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DFE----AVRTIAKEVGNAVDAESGYVPVICGLSR--------CN 161 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d~e----~v~~l~~~~~~~~~~~~~l~~~i~~~~r--------~~ 161 (442)
...++.|+.++.++.. +.|++.|-+-. +..|+ +++ .++.|.+..+. ..+++++- ..
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~---------i~i~a~s~~Ei~~~~~~~ 164 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVA-GCFPSCNLAYYEELFSKIKQNFPD---------LHIKALTAIEYAYLSKLD 164 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCC---------eeEEECCHHHHHHHHhhc
Confidence 4668999999999998 79998776532 12222 333 44444443211 12333321 11
Q ss_pred hhhHHHHHHHHHhCCCCEEEEe-ec-CChHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTF-IA-TSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~-~~-~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
....+..++.++++|++++..- .- .++ ....++ +.+.++. .+.++.|++.|++ ++-++..+.--+++..
T Consensus 165 ~~~~~e~l~~LkeAGl~~~~g~GaEi~~e-~~r~~~~p~~~t~~e~----l~~i~~a~~~Gi~-~~sgmi~G~gEt~edr 238 (370)
T PRK05926 165 NLPVKEVLQTLKIAGLDSIPGGGAEILVD-EIRETLAPGRLSSQGF----LEIHKTAHSLGIP-SNATMLCYHRETPEDI 238 (370)
T ss_pred CCCHHHHHHHHHHcCcCccCCCCchhcCH-HHHHhhCCCCCCHHHH----HHHHHHHHHcCCc-ccCceEEeCCCCHHHH
Confidence 1123556777888899886532 11 122 222223 2354444 5689999999996 6555544455567888
Q ss_pred HHHHHHHHHcCCcEEec----------cCcc-c-------ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH
Q 013498 237 YEILGEVIKVGATTLNI----------PDTV-G-------ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN 298 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~l----------aDT~-G-------~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~AN 298 (442)
++.+..+.+.+.+.+.| .+|- | ..++.+.-++++..|=.+++++++...| +.+| ..-
T Consensus 239 v~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~G--~~~ 313 (370)
T PRK05926 239 VTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYLG--IEV 313 (370)
T ss_pred HHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhcC--HHH
Confidence 89999999887664322 2332 1 3556666666655554455444677777 3345 446
Q ss_pred HHHHHHhCCCEEEecccc
Q 013498 299 TIAGACAGARQVEVTING 316 (442)
Q Consensus 299 alaAl~aGa~~vd~Tv~G 316 (442)
+..|+.+||+-+++|+..
T Consensus 314 ~q~~L~~GanD~ggt~~~ 331 (370)
T PRK05926 314 ALHLLSCGANDLSSTHQG 331 (370)
T ss_pred HHHHHhCCCccCcccccc
Confidence 788999999999999875
No 73
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.13 E-value=0.028 Score=54.76 Aligned_cols=175 Identities=21% Similarity=0.278 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-HHHHHH-----------------HHHHHhcccccccCCccc-eEeee-c
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-DFEAVR-----------------TIAKEVGNAVDAESGYVP-VICGL-S 158 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d~e~v~-----------------~l~~~~~~~~~~~~~l~~-~i~~~-~ 158 (442)
+.+.-.++++.|.+.|+|.||+|+|.+.|- |-..++ .+.+.+.+. .-.| .+++. .
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-----~~~pv~lm~y~n 86 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-----NTIPIVLMGYYN 86 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-----CCCCEEEEEecC
Confidence 347778999999999999999999876542 211111 111212111 0123 22222 1
Q ss_pred ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHH
Q 013498 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 159 r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~ 238 (442)
..-..+++..++.++.+|++.+.+. |+|. +...+.++.+|++|++.+.+.. .-++.+.+..
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~giiip----Dl~~------------ee~~~~~~~~~~~g~~~i~~i~---P~T~~~~i~~ 147 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIP----DLPP------------EEAEEFREAAKEYGLDLIFLVA---PTTPDERIKK 147 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCcEEEEC----CCCH------------HHHHHHHHHHHHcCCcEEEEeC---CCCCHHHHHH
Confidence 1112235666666667798877653 3332 3566889999999996443322 2244555544
Q ss_pred HHHHHHHcCCcEEe---ccCcccccC--HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH-HHHHHHHhCCCEE
Q 013498 239 ILGEVIKVGATTLN---IPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAGARQV 310 (442)
Q Consensus 239 ~~~~~~~~Gad~I~---laDT~G~~~--P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A-NalaAl~aGa~~v 310 (442)
++ +...+.|+ ..-+.|.-+ +..+.+.++.+++.. + ++|.+ +.|.-.. |+-..+++ |+.+
T Consensus 148 i~----~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~---~pI~v----ggGI~~~e~~~~~~~~-ADgv 212 (242)
T cd04724 148 IA----ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-D---LPIAV----GFGISTPEQAAEVAKY-ADGV 212 (242)
T ss_pred HH----hhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-C---CcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence 44 32334434 355566543 578889999999864 2 44554 4566544 66666666 7754
No 74
>PRK06256 biotin synthase; Validated
Probab=97.03 E-value=0.13 Score=52.31 Aligned_cols=217 Identities=18% Similarity=0.145 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE---ccCCCChhHHHHHHHHHHHhcccccccCCccceEee-ecccchhhHHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA---GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-LSRCNERDIKTAWEAV 172 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv---G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~-~~r~~~~dI~~a~e~l 172 (442)
.++.++.++.++.+.+.|+..+-+ |++.. ..+.+.+..+.+.+... . .+ .+++ ....+.+.+ +.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~-~~~~~~~~e~i~~i~~~-~---~i--~~~~~~g~l~~e~l----~~L 158 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS-GKEVDQVVEAVKAIKEE-T---DL--EICACLGLLTEEQA----ERL 158 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC-chHHHHHHHHHHHHHhc-C---CC--cEEecCCcCCHHHH----HHH
Confidence 479999999999999999976654 33212 12233333333332211 0 11 1211 122233333 345
Q ss_pred HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
+++|++++.+.+-+|+ ....+++.+. .++...+.++.+++.|+. |+.+..-+..-+.+.+.+.++.+.+.+++.+.
T Consensus 159 keaG~~~v~~~lEts~-~~~~~i~~~~--t~~~~i~~i~~a~~~Gi~-v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~ 234 (336)
T PRK06256 159 KEAGVDRYNHNLETSR-SYFPNVVTTH--TYEDRIDTCEMVKAAGIE-PCSGGIIGMGESLEDRVEHAFFLKELDADSIP 234 (336)
T ss_pred HHhCCCEEecCCccCH-HHHhhcCCCC--CHHHHHHHHHHHHHcCCe-eccCeEEeCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 6679999887655555 3344555432 345666789999999985 55443332345678888999999999998765
Q ss_pred c------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccC
Q 013498 253 I------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAG 322 (442)
Q Consensus 253 l------aDT----~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraG 322 (442)
+ +.| .....|.++.+++..+|-.+|+.. +.+. ++--.-+... .-+++ +||+.+= ++++=...|
T Consensus 235 i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~-I~~~--~gr~~~~~~~-~~~~~-~g~~~~~--~g~~lt~~g 307 (336)
T PRK06256 235 INFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKE-IRIA--GGREVNLRSL-QPLGL-GGANSVI--VGNYLTTVG 307 (336)
T ss_pred ecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCe-eEec--Cchhhhchhh-HHHHh-ccCceee--ECCcccCCC
Confidence 4 344 234678999999999998888632 4444 3321111111 12233 6877652 122223456
Q ss_pred cccHHHHHHHHHhc
Q 013498 323 NASLEEVVMAFKCR 336 (442)
Q Consensus 323 Na~lEevv~~L~~~ 336 (442)
+...+++- .++..
T Consensus 308 ~~~~~d~~-~~~~~ 320 (336)
T PRK06256 308 QPATADLD-MIEDL 320 (336)
T ss_pred CChHHHHH-HHHHC
Confidence 66555543 44443
No 75
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.00 E-value=0.062 Score=51.53 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.++-+.+++.|.+.|++.+|+.+- +|.-.+.++.+++..+.. ++ ..+-+=+-.+.++++.+.++ |.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~--~~~a~~~i~~l~~~~~~~--p~----~~vGaGTV~~~~~~~~a~~a----GA 89 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYT--NPFASEVIKELVELYKDD--PE----VLIGAGTVLDAVTARLAILA----GA 89 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECC--CccHHHHHHHHHHHcCCC--CC----eEEeeeeCCCHHHHHHHHHc----CC
Confidence 47899999999999999999999874 666678888888754210 00 11222223578888888775 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec--cC
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l--aD 255 (442)
+.+. .|..+ .+.++++++.|+. +.= +-.++.++. .+.++|+|.|.+ +|
T Consensus 90 ~Fiv--sP~~~------------------~~v~~~~~~~~i~-~iP-----G~~T~~E~~----~A~~~Gad~vklFPa~ 139 (213)
T PRK06552 90 QFIV--SPSFN------------------RETAKICNLYQIP-YLP-----GCMTVTEIV----TALEAGSEIVKLFPGS 139 (213)
T ss_pred CEEE--CCCCC------------------HHHHHHHHHcCCC-EEC-----CcCCHHHHH----HHHHcCCCEEEECCcc
Confidence 7653 23221 2578889999985 221 223445443 345799999988 35
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
..| |. .++.++..+|+ +++.. .-|.-..|.-.-+.+|++.+
T Consensus 140 ~~G---~~----~ik~l~~~~p~---ip~~a----tGGI~~~N~~~~l~aGa~~v 180 (213)
T PRK06552 140 TLG---PS----FIKAIKGPLPQ---VNVMV----TGGVNLDNVKDWFAAGADAV 180 (213)
T ss_pred cCC---HH----HHHHHhhhCCC---CEEEE----ECCCCHHHHHHHHHCCCcEE
Confidence 444 43 36666777775 34332 24666899999999999886
No 76
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=96.98 E-value=0.098 Score=54.06 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc-cchhhHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEAV 172 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~e~l 172 (442)
..++.++..++++.+.+.|+..|.+ |-|-..++-.+.++.+.+. ++...|..-+- .+.+. ++.+
T Consensus 44 ~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~---------g~~~~i~TNG~ll~~~~----~~~L 110 (378)
T PRK05301 44 AELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL---------GLYTNLITSGVGLTEAR----LAAL 110 (378)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc---------CCcEEEECCCccCCHHH----HHHH
Confidence 4689999999999999999988777 4576666544555555432 11122221111 12232 3344
Q ss_pred HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
+..|++.|.+.+-..+......++-. ....+++.+.++.+++.|+. |.+.. -.++.+.+++.++++.+.+.|++.+.
T Consensus 111 ~~~g~~~v~iSldg~~~e~~d~irg~-~g~f~~~~~~i~~l~~~g~~-v~i~~-vv~~~N~~~i~~~~~~~~~lgv~~i~ 187 (378)
T PRK05301 111 KDAGLDHIQLSFQDSDPELNDRLAGT-KGAFAKKLAVARLVKAHGYP-LTLNA-VIHRHNIDQIPRIIELAVELGADRLE 187 (378)
T ss_pred HHcCCCEEEEEecCCCHHHHHHHcCC-CchHHHHHHHHHHHHHCCCc-eEEEE-EeecCCHHHHHHHHHHHHHcCCCEEE
Confidence 55688888887665432222233211 12456677788999999986 65544 24677889999999999999999887
Q ss_pred cc
Q 013498 253 IP 254 (442)
Q Consensus 253 la 254 (442)
+.
T Consensus 188 ~~ 189 (378)
T PRK05301 188 LA 189 (378)
T ss_pred Ee
Confidence 64
No 77
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.92 E-value=0.24 Score=52.98 Aligned_cols=197 Identities=17% Similarity=0.206 Sum_probs=112.1
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEE--c-cCCCChhH--HHHHHHHHHHhcccccccCCcc--ceEeeecccchhhHHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKED--FEAVRTIAKEVGNAVDAESGYV--PVICGLSRCNERDIKT 167 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEv--G-~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~--~~i~~~~r~~~~dI~~ 167 (442)
...++.|+.++-++.+.+.|++.+-+ | .|...+-| .+.++.|.+.... .+.. ..+. .+..+.++.+
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~-----~g~i~~v~in-ig~lt~eey~- 184 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHG-----NGEIRRVNVN-IAPTTVENYK- 184 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccc-----cCcceeeEEE-eecCCHHHHH-
Confidence 35689999999999999999998765 3 23222211 2344444432100 0111 1222 2334555544
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEE----ccCCCCCCCHHHHHHHHHH
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEF----SPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f----~~edasr~d~~~l~~~~~~ 242 (442)
.|+.+|++++.+|.-+.+--.-.+++. .+....+.=.++++.|++.|++.|+. ++.+ ++.| ...++..
T Consensus 185 ---~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge-~~~E---~~~l~~h 257 (469)
T PRK09613 185 ---KLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYD-YKFE---VLGLLMH 257 (469)
T ss_pred ---HHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCC-CHHH---HHHHHHH
Confidence 456679999999887754333334421 11122344456889999999964554 4422 3332 2233333
Q ss_pred HHH------cCCcEEecc------Cc-c----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 243 VIK------VGATTLNIP------DT-V----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 243 ~~~------~Gad~I~la------DT-~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+.. .|++.|.++ +| . -...+.++.++|..+|=.+|.. .|.+=++-.-. +=+ ..+..
T Consensus 258 l~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~---~I~lStRE~~~--~r~--~~~~~ 330 (469)
T PRK09613 258 AEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYT---GMILSTRESAE--LRR--EVLEL 330 (469)
T ss_pred HHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCC---CceeecCCCHH--HHH--HHHhh
Confidence 322 256666654 44 2 2367889999999999889853 34444555533 222 34566
Q ss_pred CCCEEEe
Q 013498 306 GARQVEV 312 (442)
Q Consensus 306 Ga~~vd~ 312 (442)
|++++++
T Consensus 331 gvt~~sa 337 (469)
T PRK09613 331 GVSQISA 337 (469)
T ss_pred cceeecc
Confidence 9999863
No 78
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=96.87 E-value=0.26 Score=48.63 Aligned_cols=160 Identities=23% Similarity=0.326 Sum_probs=87.9
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEcc----CCC---Ch-hHHHHHHHHHHHhcccccccCCccce
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF----PAA---SK-EDFEAVRTIAKEVGNAVDAESGYVPV 153 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~----p~~---~~-~d~e~v~~l~~~~~~~~~~~~~l~~~ 153 (442)
|+-.|. |-..--|..++.++.++.++.+.+.|.++|.+|. |.. ++ +|++.+..+.+.+.... . .|
T Consensus 5 ilN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~----~-~p- 77 (257)
T TIGR01496 5 IVNVTP-DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP----D-VP- 77 (257)
T ss_pred EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-Ce-
Confidence 334443 4443335668999999999999999999999995 322 22 24555555544432110 1 12
Q ss_pred EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCC-
Q 013498 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRS- 231 (442)
Q Consensus 154 i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~- 231 (442)
++.-+ .+.+-++.+++. |++.|. +++-. . -.++++.+++.|.. +.....+. .++
T Consensus 78 lsiDT-~~~~vi~~al~~----G~~iIN---sis~~--------~-------~~~~~~l~~~~~~~-vV~m~~~g~p~~~ 133 (257)
T TIGR01496 78 ISVDT-YRAEVARAALEA----GADIIN---DVSGG--------Q-------DPAMLEVAAEYGVP-LVLMHMRGTPRTM 133 (257)
T ss_pred EEEeC-CCHHHHHHHHHc----CCCEEE---ECCCC--------C-------CchhHHHHHHcCCc-EEEEeCCCCCccc
Confidence 33322 366677777764 777665 33310 0 11344557778876 33322111 111
Q ss_pred ------------CHHHHHHHHHHHHHcCCc--EEeccCc-cccc-CHHHHHHHHHHHH
Q 013498 232 ------------DRKFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIADIK 273 (442)
Q Consensus 232 ------------d~~~l~~~~~~~~~~Gad--~I~laDT-~G~~-~P~~v~~li~~l~ 273 (442)
-.+++.+.++.+.+.|++ .|.| |. +|.. ++++-.++++.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~ 190 (257)
T TIGR01496 134 QENPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLE 190 (257)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHH
Confidence 124677777888899984 5555 55 2321 3444455555443
No 79
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=96.85 E-value=0.045 Score=55.66 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
..++.++...+++.+.+.|++.|-+ |-|-..++-.+.++.+.+..+. . ...+.. |-.-+...++.++
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l--~-----~i~itT----NG~ll~~~~~~L~ 111 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGL--E-----ELSLTT----NGSRLARFAAELA 111 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCC--c-----eEEEEe----ChhHHHHHHHHHH
Confidence 3589999999999999999999888 5576655445566666543110 0 112222 2222333455667
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
.+|+++|.+.+-..+.....+++. ...++++.+.++.+++.|+..|.++..-....+.+++.++++.+.+.|++..
T Consensus 112 ~aGl~~v~ISlDs~~~e~~~~i~~--~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 112 DAGLKRLNISLDTLRPELFAALTR--NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred HcCCCeEEEEeccCCHHHhhhhcC--CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 789999998776554333333332 2347778889999999998325443322223566889999999999999753
No 80
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.72 E-value=0.25 Score=51.25 Aligned_cols=222 Identities=16% Similarity=0.109 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--cc-CCCCh-hH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GF-PAASK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~-p~~~~-~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
..++.++.++.++.+.+.|++.|-+ |- |...+ +. .+.++.+.+..+. . .+.. .....+++ +
T Consensus 102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~-------i--~i~~-g~lt~e~l----~ 167 (371)
T PRK09240 102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS-------V--SIEV-QPLSEEEY----A 167 (371)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC-------c--eecc-CCCCHHHH----H
Confidence 5689999999999999999998855 32 32111 11 2344444432211 0 1111 11233433 4
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad 249 (442)
.++.+|++++++.+-+++.....++.. .+....+...+.++.|++.|+..|+.+..-+---..+...+++..+.+.+++
T Consensus 168 ~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~ 247 (371)
T PRK09240 168 ELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRK 247 (371)
T ss_pred HHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHh
Confidence 567789999999988854333344421 1112234455688999999985465443322222345566666655555432
Q ss_pred ------EEe---ccCccc------ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH---HHHHHHHHHhCCCEEE
Q 013498 250 ------TLN---IPDTVG------ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS---TANTIAGACAGARQVE 311 (442)
Q Consensus 250 ------~I~---laDT~G------~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA---~ANalaAl~aGa~~vd 311 (442)
.|. |-...| .++|.++.++|..+|-.+|+. .|-+=+=-...|. +.....++.|| -.
T Consensus 248 ~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~---~i~~s~g~~~~lrd~~~~~~~~~~~ag---~~ 321 (371)
T PRK09240 248 YWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDV---EISLSTRESPEFRDNLIPLGITKMSAG---SS 321 (371)
T ss_pred CCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCccc---ccEEecCCCHHHHHHHHhhcceeeccC---cc
Confidence 343 333333 268899999999999988863 3333333221111 01112333343 12
Q ss_pred ecccccccc-c--------CcccHHHHHHHHHhcc
Q 013498 312 VTINGIGER-A--------GNASLEEVVMAFKCRG 337 (442)
Q Consensus 312 ~Tv~GlGer-a--------GNa~lEevv~~L~~~g 337 (442)
+.++|+..- . -.-+.++++.+|+..|
T Consensus 322 ~~~G~y~~~~~~~~qf~~~~~r~~~~~~~~i~~~g 356 (371)
T PRK09240 322 TQPGGYADDHKELEQFEISDDRSVEEVAAALRAKG 356 (371)
T ss_pred CCCCCcCCCCCCcCCccCCCCCCHHHHHHHHHHCC
Confidence 345555443 1 2456777777777764
No 81
>PRK08508 biotin synthase; Provisional
Probab=96.69 E-value=0.24 Score=49.26 Aligned_cols=220 Identities=15% Similarity=0.051 Sum_probs=126.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
++.|+.++.++...+.|+..|-+ +.+...+.+++.+..+.+.+..... .+ ...+..++..++ .++.++++
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p---~l-~i~~s~G~~~~e----~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVP---GL-HLIACNGTASVE----QLKELKKA 111 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCC---Cc-EEEecCCCCCHH----HHHHHHHc
Confidence 79999999999999999988754 1222233355555555554432100 11 111223344433 44556678
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec--
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI-- 253 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l-- 253 (442)
|+++++.-+-+++.+. .+...+ ..++...+.++.|++.|++ |+-+...+---+++++.+.+..+.+.+++.|-+
T Consensus 112 Gld~~~~~lEt~~~~~-~~i~~~--~~~~~~l~~i~~a~~~Gi~-v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~ 187 (279)
T PRK08508 112 GIFSYNHNLETSKEFF-PKICTT--HTWEERFQTCENAKEAGLG-LCSGGIFGLGESWEDRISFLKSLASLSPHSTPINF 187 (279)
T ss_pred CCCEEcccccchHHHh-cCCCCC--CCHHHHHHHHHHHHHcCCe-ecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCC
Confidence 9999988777776432 222221 2244556778889999985 544333333445788999999999999884322
Q ss_pred ----cCcc---cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccH
Q 013498 254 ----PDTV---GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASL 326 (442)
Q Consensus 254 ----aDT~---G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~l 326 (442)
..|- ..++|.++-+.++..|-.+|+. .+++.-=--..+|- .-..++.+||+.+ -++++=.-.|+. .
T Consensus 188 ~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~-~i~~~~gr~~~~~~---~~~~~~~~g~n~~--~~g~~lt~~g~~-~ 260 (279)
T PRK08508 188 FIPNPALPLKAPTLSADEALEIVRLAKEALPNA-RLMVAGGREVVFGE---RQYEIFEAGANAI--VIGDYLTTKGEA-P 260 (279)
T ss_pred cCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCc-eeeecCChhhhchh---hHHHHHhcCCcce--eecCcccCCCCC-h
Confidence 2221 2368899999999888888853 24443210011111 2356788898773 222222233443 3
Q ss_pred HHHHHHHHhc
Q 013498 327 EEVVMAFKCR 336 (442)
Q Consensus 327 Eevv~~L~~~ 336 (442)
++=...++..
T Consensus 261 ~~d~~~~~~~ 270 (279)
T PRK08508 261 KKDIEKLKSL 270 (279)
T ss_pred HHHHHHHHHc
Confidence 3334555554
No 82
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.61 E-value=0.15 Score=48.92 Aligned_cols=154 Identities=22% Similarity=0.182 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.-+.++-+++++.|.+.|++.||+++ .+++-.+.++.+++..++- .|-+=+-.+.++.+.++++ |
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEitl--~~~~~~~~I~~l~~~~p~~---------~IGAGTVl~~~~a~~a~~a----G 87 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVTL--RTPAALEAIRLIAKEVPEA---------LIGAGTVLNPEQLAQAIEA----G 87 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEec--CCccHHHHHHHHHHHCCCC---------EEEEeeccCHHHHHHHHHc----C
Confidence 35789999999999999999999995 4566677888887754321 1222223466777777775 7
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCc
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT 256 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT 256 (442)
.+.+.. |.. + .+.++++++.|+. .+ .+-.+|.+ +..+.++|++.+.+-|.
T Consensus 88 A~Fivs--P~~----------~--------~~vi~~a~~~~i~--~i----PG~~TptE----i~~a~~~Ga~~vKlFPa 137 (212)
T PRK05718 88 AQFIVS--PGL----------T--------PPLLKAAQEGPIP--LI----PGVSTPSE----LMLGMELGLRTFKFFPA 137 (212)
T ss_pred CCEEEC--CCC----------C--------HHHHHHHHHcCCC--Ee----CCCCCHHH----HHHHHHCCCCEEEEccc
Confidence 776542 221 1 1567788888875 22 12234443 44677899999999542
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 257 ~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
+..- =-..++.++.-+|+ +++.. .=|...-|.-.-+.+|
T Consensus 138 -~~~g---g~~~lk~l~~p~p~---~~~~p----tGGV~~~ni~~~l~ag 176 (212)
T PRK05718 138 -EASG---GVKMLKALAGPFPD---VRFCP----TGGISPANYRDYLALP 176 (212)
T ss_pred -hhcc---CHHHHHHHhccCCC---CeEEE----eCCCCHHHHHHHHhCC
Confidence 1110 13567777777775 34442 3466667888888888
No 83
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=96.59 E-value=0.44 Score=49.35 Aligned_cols=170 Identities=14% Similarity=0.054 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--c-cCCCCh-hH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G-~p~~~~-~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
..++.++.++.++.+.+.|+..|=+ | .|...+ +. .+.++.+.+..+. ....+ +..+.+++ +
T Consensus 101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~-------i~Iei---~~lt~e~~----~ 166 (366)
T TIGR02351 101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSS-------LAIEV---QPLNEEEY----K 166 (366)
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCc-------ccccc---ccCCHHHH----H
Confidence 4479999999999999999997754 3 233222 21 3444555443211 00111 12344444 4
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCC-
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA- 248 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Ga- 248 (442)
.++.+|++++++++-+++.....++.. .+....+...+.++.|++.|+..|+.+..-+---.......++..+...++
T Consensus 167 ~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~ 246 (366)
T TIGR02351 167 KLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKK 246 (366)
T ss_pred HHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHH
Confidence 566679999999988874444444431 112224455678999999998644443321111122333333333333322
Q ss_pred -----cEEe---cc------CcccccCHHHHHHHHHHHHHhCCCC
Q 013498 249 -----TTLN---IP------DTVGITMPTEFGKLIADIKANTPGI 279 (442)
Q Consensus 249 -----d~I~---la------DT~G~~~P~~v~~li~~l~~~~p~~ 279 (442)
..|. |- .....++|.++.++|..+|-.+|..
T Consensus 247 ~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~ 291 (366)
T TIGR02351 247 YWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFV 291 (366)
T ss_pred cCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCccc
Confidence 2222 22 2235577999999999999988864
No 84
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.55 E-value=0.25 Score=46.13 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~ 178 (442)
+.++-+++++.|.+.|++.||+-+ .++...+.++.+.+..++ ..+.+-.-.+.++++.++++ |.+
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~--~~~~~~~~i~~l~~~~~~---------~~iGag~v~~~~~~~~a~~~----Ga~ 78 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITL--RTPGALEAIRALRKEFPE---------ALIGAGTVLTPEQADAAIAA----GAQ 78 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC--CChhHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CCC
Confidence 588899999999999999999975 345566788888775421 11222122357788887775 888
Q ss_pred EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc
Q 013498 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (442)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G 258 (442)
.++. +.++ .+.+++++..|.. +..++ .+++++ ..+.++|+|.|.+ +..
T Consensus 79 ~i~~--p~~~------------------~~~~~~~~~~~~~-~i~gv-----~t~~e~----~~A~~~Gad~i~~-~p~- 126 (190)
T cd00452 79 FIVS--PGLD------------------PEVVKAANRAGIP-LLPGV-----ATPTEI----MQALELGADIVKL-FPA- 126 (190)
T ss_pred EEEc--CCCC------------------HHHHHHHHHcCCc-EECCc-----CCHHHH----HHHHHCCCCEEEE-cCC-
Confidence 8763 3332 2467778888875 54444 244443 3445799999998 332
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 259 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 259 ~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.|. -.++++.+++.+|. +++..=. |.-..|....+++|++.|-+
T Consensus 127 --~~~-g~~~~~~l~~~~~~---~p~~a~G----GI~~~n~~~~~~~G~~~v~v 170 (190)
T cd00452 127 --EAV-GPAYIKALKGPFPQ---VRFMPTG----GVSLDNAAEWLAAGVVAVGG 170 (190)
T ss_pred --ccc-CHHHHHHHHhhCCC---CeEEEeC----CCCHHHHHHHHHCCCEEEEE
Confidence 222 45567777776664 3444322 45567889999999888743
No 85
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.54 E-value=0.53 Score=47.92 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEc--c-CCCC-------------hhHHHHHHHHHHHhcccccccCCccceEeeeccc
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAG--F-PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG--~-p~~~-------------~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~ 160 (442)
.++.|+.++.++.+.+.|+..|-+- - |... ++-.+.++.+.+..... ++.|.+.. .-.
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~-----g~~~~~~~-~~l 113 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEE-----GLLPHTNA-GIL 113 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhc-----CCCccccC-CCC
Confidence 7999999999999999999987773 2 2222 11234555554432111 22232111 112
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecC-ChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHH
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIAT-SGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~-Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~ 238 (442)
..+.++. ++.+++. +.+..-+ ++... ..++. .+....+...+.++.+++.|+. +..++..+---+.+...+
T Consensus 114 t~e~i~~----Lk~ag~~-l~~~~et~~e~l~-~~v~~~~~~~~~~~~l~~i~~a~~~Gi~-~~~~~i~G~gEt~ed~~~ 186 (336)
T PRK06245 114 TREEMEK----LKEVNAS-MGLMLEQTSPRLL-NTVHRGSPGKDPELRLETIENAGKLKIP-FTTGILIGIGETWEDRAE 186 (336)
T ss_pred CHHHHHH----HHHhCCC-CCCCccccchhhH-HhhccCCCCCCHHHHHHHHHHHHHcCCc-eeeeeeeECCCCHHHHHH
Confidence 3444443 3333432 3333232 33332 22221 1111233446788999999986 432222111123344444
Q ss_pred HHHHHHHc-----CCcEEec------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 239 ILGEVIKV-----GATTLNI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 239 ~~~~~~~~-----Gad~I~l------aDT----~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
.++.+.+. |++.+.+ ..| .....+++..++++..|..+|+ .+.+..- -.+|.-+ ...++
T Consensus 187 ~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~--~i~i~~~--~~~~~~~--~~~~L 260 (336)
T PRK06245 187 SLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP--DISIQVP--PNLNRDT--GLLLL 260 (336)
T ss_pred HHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC--CceEecC--CccchHH--HHHHH
Confidence 33333333 2444332 122 2245678899999998888864 2333322 2444433 44569
Q ss_pred HhCCCEEEeccccccc---ccC-cccHHHHHHHHHhcc
Q 013498 304 CAGARQVEVTINGIGE---RAG-NASLEEVVMAFKCRG 337 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGe---raG-Na~lEevv~~L~~~g 337 (442)
.+||+-+.+|+..-|+ ..+ ..++|+++..++..|
T Consensus 261 ~~Gand~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 298 (336)
T PRK06245 261 DAGADDLGGISPVTKDYVNPEYPWPDIEELREILEEAG 298 (336)
T ss_pred hcCCccccCCccCCCceeCCCCCCCCHHHHHHHHHHcC
Confidence 9999999988886555 111 246788888887765
No 86
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=96.51 E-value=0.13 Score=52.71 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=92.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc-cchhhHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEAV 172 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~e~l 172 (442)
..++.++..++++.+.+.|+..|.+ |-|-..++-.+.++.+.+. ++...+..-+- .+.+ .++.+
T Consensus 35 ~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~---------g~~~~l~TNG~ll~~e----~~~~L 101 (358)
T TIGR02109 35 AELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL---------GLYTNLITSGVGLTEA----RLDAL 101 (358)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc---------CCeEEEEeCCccCCHH----HHHHH
Confidence 3589999999999999999988877 4576666445556555442 12122222111 1222 23444
Q ss_pred HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
+..|++.|.+.+-..+.....+++. .....+++.+.++++++.|+. |.+... .++.+.+++.++++.+.+.|++.+.
T Consensus 102 ~~~g~~~v~iSldg~~~e~~d~~rg-~~g~f~~v~~~i~~l~~~g~~-v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~ 178 (358)
T TIGR02109 102 ADAGLDHVQLSFQGVDEALADRIAG-YKNAFEQKLAMARAVKAAGLP-LTLNFV-IHRHNIDQIPEIIELAIELGADRVE 178 (358)
T ss_pred HhCCCCEEEEeCcCCCHHHHHHhcC-CccHHHHHHHHHHHHHhCCCc-eEEEEE-eccCCHHHHHHHHHHHHHcCCCEEE
Confidence 5568888888765543222233332 223567788889999999985 555442 3577888999999999999999887
Q ss_pred c
Q 013498 253 I 253 (442)
Q Consensus 253 l 253 (442)
+
T Consensus 179 ~ 179 (358)
T TIGR02109 179 L 179 (358)
T ss_pred E
Confidence 6
No 87
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.50 E-value=0.27 Score=48.32 Aligned_cols=182 Identities=16% Similarity=0.185 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc--CCCChhHH-----HHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d~-----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
=|.++.+++++.+.++|+..+=-|. |..+|..| +.++.|.+..... ++ +.++ .-...++++.+.+
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~-----Gl-~~~T--ev~d~~~v~~~~e 97 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEF-----GL-LSVS--EIMSERQLEEAYD 97 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHc-----CC-CEEE--eeCCHHHHHHHHh
Confidence 4789999999999999999998885 55665432 4555555442211 22 2222 1235666665544
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
.++.+.| +..+. +. .++++++.+.|.. |.+.- ..-.+++.+...++.+.+.|...
T Consensus 98 -----~vdilqI--gs~~~--------~n-------~~LL~~va~tgkP-Vilk~--G~~~t~~e~~~A~e~i~~~Gn~~ 152 (250)
T PRK13397 98 -----YLDVIQV--GARNM--------QN-------FEFLKTLSHIDKP-ILFKR--GLMATIEEYLGALSYLQDTGKSN 152 (250)
T ss_pred -----cCCEEEE--Ccccc--------cC-------HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHHHcCCCe
Confidence 3566654 33221 11 2456666667875 66643 22578899999999999999988
Q ss_pred EeccC--cccccCHHH-HH--HHHHHHHHhCCCCcceeEEE---eecCCcchHHHHHHHHHHhCCC--EEEecccc
Q 013498 251 LNIPD--TVGITMPTE-FG--KLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGAR--QVEVTING 316 (442)
Q Consensus 251 I~laD--T~G~~~P~~-v~--~li~~l~~~~p~~~~v~i~~---H~HNDlGLA~ANalaAl~aGa~--~vd~Tv~G 316 (442)
|.|+- |.|+-.|.+ .- .-|..+++.+. +||.+ |.=..+-+..+-+++|+.+||+ .|+.-...
T Consensus 153 i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~----lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P 224 (250)
T PRK13397 153 IILCERGVRGYDVETRNMLDIMAVPIIQQKTD----LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDP 224 (250)
T ss_pred EEEEccccCCCCCccccccCHHHHHHHHHHhC----CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence 99987 334444433 22 34566776552 34333 5433444556789999999999 88876664
No 88
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=96.43 E-value=0.6 Score=43.70 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEc-----cCCCChhHHHHHHHHHHHhcccccccCCccceEe-eecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG-----~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e 170 (442)
....+.-.+.++.+.+.|+|.||++ |....+-.++.++.+.+.... +..+ ...+ . .+.-++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~---------~v~v~lm~~-~---~~~~~~ 73 (210)
T TIGR01163 7 SADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDL---------PIDVHLMVE-N---PDRYIE 73 (210)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCC---------cEEEEeeeC-C---HHHHHH
Confidence 4555667789999999999999997 422333446777777753211 2111 1122 2 222344
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
....+|.+.|.+....+ +.....++.++..|.. +.+... ..++.+.+.++ ..++|.
T Consensus 74 ~~~~~gadgv~vh~~~~----------------~~~~~~~~~~~~~g~~-~~~~~~--~~t~~e~~~~~-----~~~~d~ 129 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS----------------EHIHRLLQLIKDLGAK-AGIVLN--PATPLEFLEYV-----LPDVDL 129 (210)
T ss_pred HHHHcCCCEEEEccCCc----------------hhHHHHHHHHHHcCCc-EEEEEC--CCCCHHHHHHH-----HhhCCE
Confidence 44567999876643221 2234566888888875 444431 22344444333 235777
Q ss_pred Eec----cCcccccCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 251 LNI----PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 251 I~l----aDT~G~~~P~~v~~li~~l~~~~p~~~-~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
+++ +-+.|-..+....+.++.+++..+... ++++.+ +-|+-..|.-.+++.||+.+=
T Consensus 130 i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v----~GGI~~env~~l~~~gad~ii 191 (210)
T TIGR01163 130 VLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV----DGGVNDDNARELAEAGADILV 191 (210)
T ss_pred EEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence 665 333443333444456666665432100 133433 247777888888999999863
No 89
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=96.43 E-value=0.25 Score=50.19 Aligned_cols=222 Identities=15% Similarity=0.085 Sum_probs=119.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEcc---CCCChhH-------------HHHHHHHHHHhcccccccCCccceEeeec
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGF---PAASKED-------------FEAVRTIAKEVGNAVDAESGYVPVICGLS 158 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~---p~~~~~d-------------~e~v~~l~~~~~~~~~~~~~l~~~i~~~~ 158 (442)
...++.++.++.++.+.+.|++.|-+-. |...-++ .+.+..+.+.+... .++.|.+. ..
T Consensus 32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e----~~~~~~~~-~g 106 (322)
T TIGR03550 32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEE----TGLLPHTN-PG 106 (322)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----cCCccccC-CC
Confidence 4578999999999999999999876632 3221001 13333333322110 01112111 11
Q ss_pred ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHH----Hh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCC
Q 013498 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEH----KL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSD 232 (442)
Q Consensus 159 r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~----~l--~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d 232 (442)
-.+.+.++ .++.+|++ +++..-++...+.. .. +++.+ .-.+.++.|++.|+. ++.++..+.--+
T Consensus 107 ~lt~e~l~----~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~----~~l~~i~~a~~~Gi~-~~s~~i~G~gEt 176 (322)
T TIGR03550 107 VMSRDELA----RLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPA----VRLETIEDAGRLKIP-FTTGILIGIGET 176 (322)
T ss_pred CCCHHHHH----HHHhhCCC-CCcchhhhccccccccccCCCCCCCHH----HHHHHHHHHHHcCCC-ccceeeEeCCCC
Confidence 12334443 34445654 24433332222111 11 12333 336788999999986 544333222234
Q ss_pred HHHHHHHHHHHHHcC-----CcEEec------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH
Q 013498 233 RKFLYEILGEVIKVG-----ATTLNI------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA 297 (442)
Q Consensus 233 ~~~l~~~~~~~~~~G-----ad~I~l------aDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A 297 (442)
++...+.+..+.+.+ ++.+.+ +.|- ...++.+..++++..|=.+|+..++...+ .+|--
T Consensus 177 ~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~----~l~~~-- 250 (322)
T TIGR03550 177 REERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP----NLNRE-- 250 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC----ccChH--
Confidence 566666666665543 543221 2442 24678888888888887775433466665 23311
Q ss_pred HHHHHHHhCCCEEEeccc--c-cccccCc-ccHHHHHHHHHhcc
Q 013498 298 NTIAGACAGARQVEVTIN--G-IGERAGN-ASLEEVVMAFKCRG 337 (442)
Q Consensus 298 NalaAl~aGa~~vd~Tv~--G-lGeraGN-a~lEevv~~L~~~g 337 (442)
.+..|+.+||+-+++|+. | .|...|. .+.+++...++..|
T Consensus 251 ~~~~~L~~Gand~~gt~~~~~~~~~~~~~~~~~~~~~~~i~~~g 294 (322)
T TIGR03550 251 DYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAG 294 (322)
T ss_pred HHHHHHhcCCccccCcccCchhhcCCCCCCCCHHHHHHHHHHcC
Confidence 367889999999999964 1 1211232 36778877777664
No 90
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.42 E-value=0.32 Score=46.40 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.++-+++++.|.+.|++.||+.+ .+|.-.+.++.+++..+. ..+-+=+-.+.++.+.+.++ |.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~---------~~vGAGTVl~~~~a~~a~~a----GA 81 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPD---------ALIGAGTVLNPEQLRQAVDA----GA 81 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEEEEeCCCHHHHHHHHHc----CC
Confidence 4789999999999999999999987 456667888888875431 11222233577888888775 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~ 257 (442)
+.+. .|..+ .+.++++++.|+. +.= +-.+|.++ ..+.++|++.|-+
T Consensus 82 ~Fiv--sP~~~------------------~~v~~~~~~~~i~-~iP-----G~~TptEi----~~A~~~Ga~~vKl---- 127 (204)
T TIGR01182 82 QFIV--SPGLT------------------PELAKHAQDHGIP-IIP-----GVATPSEI----MLALELGITALKL---- 127 (204)
T ss_pred CEEE--CCCCC------------------HHHHHHHHHcCCc-EEC-----CCCCHHHH----HHHHHCCCCEEEE----
Confidence 7652 23221 1678889999975 221 22334433 3566899998776
Q ss_pred cccCHHH-H--HHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 258 GITMPTE-F--GKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 258 G~~~P~~-v--~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.|.. + ..+++.|+.-+|++ ++- -.-|....|.-.-+.+|+..+
T Consensus 128 ---FPA~~~GG~~yikal~~plp~i---~~~----ptGGV~~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 128 ---FPAEVSGGVKMLKALAGPFPQV---RFC----PTGGINLANVRDYLAAPNVAC 173 (204)
T ss_pred ---CCchhcCCHHHHHHHhccCCCC---cEE----ecCCCCHHHHHHHHhCCCEEE
Confidence 2322 2 25788888877753 333 344677789999999998765
No 91
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=96.37 E-value=0.3 Score=47.53 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=99.4
Q ss_pred HHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeee--cc------------c----chhhH
Q 013498 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL--SR------------C----NERDI 165 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~--~r------------~----~~~dI 165 (442)
.+.++.+.++|++.||+..|.. .+.+.++.+.+..+-. .....+ .. . ..+.+
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~~--~~~~~~~~~l~~~gl~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPYD--YDIEELKQVLASNKLE--------HTLHNLPAGDWAAGERGIACIPGREEEFRDGV 87 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCCC--CCHHHHHHHHHHcCCc--------EEEEcCCCCccccCcCccccCCCcHHHHHHHH
Confidence 3457788888999999976532 3455666655543221 111111 00 0 12346
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCeEEEccCC------CCCCCHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPED------AGRSDRKF 235 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s----~~e~l~~~~~~v~~ar~~G~~~V~f~~ed------asr~d~~~ 235 (442)
+++++..+..|.+.|.++....+ -+.+ .+...+.+.++.++|++.|+. +.+-+.. ..=.+.+.
T Consensus 88 ~~~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 88 AAAIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDIL-LLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCCcCCCCCccCCHHH
Confidence 67777777778888876543210 0112 234456667888888899874 5442211 11124455
Q ss_pred HHHHHHHHHHcCCcEEe-ccCcccccCH-HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 236 LYEILGEVIKVGATTLN-IPDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~-laDT~G~~~P-~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
..++++.+ +.+.+. .-|+.=.... .+..+.++.+.+ -...+|.++..+-
T Consensus 161 ~~~ll~~v---~~~~v~l~~D~~h~~~~g~~~~~~~~~~~~-------ri~~vHikD~~~~------------------- 211 (258)
T PRK09997 161 ALKLIDDV---GCCNLKIQYDIYHMQRMEGELTNTMTQWAD-------KIGHLQIADNPHR------------------- 211 (258)
T ss_pred HHHHHHHh---CCCCEEEEeEHHHhhhcCCcHHHHHHHhhC-------cccEEEeCCCCCC-------------------
Confidence 55555443 444443 3365322211 123333333322 2357888874220
Q ss_pred ccccccccCcccHHHHHHHHHhccc
Q 013498 314 INGIGERAGNASLEEVVMAFKCRGE 338 (442)
Q Consensus 314 v~GlGeraGNa~lEevv~~L~~~g~ 338 (442)
.-+| .|..+.++++..|+..|.
T Consensus 212 -~~~G--~G~id~~~i~~aL~~~Gy 233 (258)
T PRK09997 212 -GEPG--TGEINYDYLFKVIENSDY 233 (258)
T ss_pred -CCCC--CCcCCHHHHHHHHHHhCC
Confidence 1234 488999999999998763
No 92
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.09 Score=50.30 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
..+.++.+++++.+.+. ++.||+|-|-...+-.+.++.|++..++. ..++.+--+..-+++. +....+|
T Consensus 12 ~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~~aV~~lr~~~pd~--------~IvAD~Kt~D~G~~e~--~ma~~aG 80 (217)
T COG0269 12 LLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEGMRAVRALRELFPDK--------IIVADLKTADAGAIEA--RMAFEAG 80 (217)
T ss_pred ccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhHHHHHHHHHHCCCC--------eEEeeeeecchhHHHH--HHHHHcC
Confidence 46889999999999999 99999999966555568999998875542 2344443334444432 1122358
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
.+.+.+.....+ +.+..+++.|++.|.. +.+.+ .+-.|++.. .+.+.++|++.+.+
T Consensus 81 Ad~~tV~g~A~~---------------~TI~~~i~~A~~~~~~-v~iDl--~~~~~~~~~---~~~l~~~gvd~~~~ 136 (217)
T COG0269 81 ADWVTVLGAADD---------------ATIKKAIKVAKEYGKE-VQIDL--IGVWDPEQR---AKWLKELGVDQVIL 136 (217)
T ss_pred CCEEEEEecCCH---------------HHHHHHHHHHHHcCCe-EEEEe--ecCCCHHHH---HHHHHHhCCCEEEE
Confidence 888776654432 5566788888888864 55543 233344433 33444466665544
No 93
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.30 E-value=0.57 Score=44.74 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhHcCCCEEEEc-cCCCChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAG-FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG-~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~ 178 (442)
++..++++.+.+.|.|.|++| +-...++.. +.++.+.+.. -.|.+. + ..+.+.+- .+.|
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~---------~lPvil-f-p~~~~~i~--------~~aD 71 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKIT---------NLPVIL-F-PGNVNGLS--------RYAD 71 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhc---------CCCEEE-E-CCCccccC--------cCCC
Confidence 666779999999999999997 433444443 3455555431 124332 1 22322222 1445
Q ss_pred EEEEeecCChHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCC-----eEEEccCC----------CCCCCHHHHHHHHHH
Q 013498 179 RIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCD-----DVEFSPED----------AGRSDRKFLYEILGE 242 (442)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ar~~G~~-----~V~f~~ed----------asr~d~~~l~~~~~~ 242 (442)
.+-+..- +| .++.+.+..-.+.+-.+|+.|.+ ++.+++.. ..+.+++.....+..
T Consensus 72 ~~~~~sl---------lns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~a 142 (205)
T TIGR01769 72 AVFFMSL---------LNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLA 142 (205)
T ss_pred EEEEEEe---------ecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHH
Confidence 4432211 22 34455555545555555777764 33343321 234578899999999
Q ss_pred HHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 243 ~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+..+|.++|+|.|..|...|-. .++++.+++.+. . .+.+++--++ ...+..++.+||+.|
T Consensus 143 a~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~~-~-Pv~vGGGIrs-----~e~a~~l~~~GAD~V 202 (205)
T TIGR01769 143 AKYFGMKWVYLEAGSGASYPVN-PETISLVKKASG-I-PLIVGGGIRS-----PEIAYEIVLAGADAI 202 (205)
T ss_pred HHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhhC-C-CEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 9999999999999988854422 667777777652 1 2455532222 233444557788876
No 94
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=96.29 E-value=0.16 Score=51.47 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~ 174 (442)
.++.++.++ .+++.|+..|-+ |=|-..|+-.+.++.+.+. +....++. |---++..++.++.
T Consensus 58 ~ls~ee~~~---~i~e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~---------g~~v~l~T----NG~ll~~~~~~l~~ 121 (318)
T TIGR03470 58 RLSVEECLR---AVDECGAPVVSIPGGEPLLHPEIDEIVRGLVAR---------KKFVYLCT----NALLLEKKLDKFEP 121 (318)
T ss_pred CCCHHHHHH---HHHHcCCCEEEEeCccccccccHHHHHHHHHHc---------CCeEEEec----CceehHHHHHHHHh
Confidence 467776554 456789987766 4466666545666665442 11112221 21122223344455
Q ss_pred CCCCEEEEee-cCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 175 AKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 175 ~g~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
.+...|.+.+ +..+.|-... ..+..++.+.+.++.+++.|+. |.+...-..+.+.+++.++++.+.+.|++.+.+
T Consensus 122 ~~~~~i~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~-v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i 197 (318)
T TIGR03470 122 SPYLTFSVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFR-VTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTI 197 (318)
T ss_pred CCCcEEEEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCc-EEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5666666643 3334444321 2234578888999999999985 666542234678999999999999999998877
Q ss_pred cC---------cccccCHHHHHHHHHHHHHh
Q 013498 254 PD---------TVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 254 aD---------T~G~~~P~~v~~li~~l~~~ 275 (442)
.- .--.+.+++..+++..+.+.
T Consensus 198 ~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 198 SPGYAYEKAPDQDHFLGRRQTKKLFREVLSN 228 (318)
T ss_pred ecCcccccccccccccCHHHHHHHHHHHHhh
Confidence 31 11245677788888777653
No 95
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=96.22 E-value=0.44 Score=49.51 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCcc-ceEeeecccchhhHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYV-PVICGLSRCNERDIKTAWEAV 172 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~-~~i~~~~r~~~~dI~~a~e~l 172 (442)
..++.++..++++.+.+.|++.|-+ |-|...++-.+.++.+.+.. ++. ..|.. |---+...++.+
T Consensus 88 ~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~--------gi~~i~itT----NG~lL~~~~~~L 155 (373)
T PLN02951 88 HLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLK--------GLKTLAMTT----NGITLSRKLPRL 155 (373)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcC--------CCceEEEee----CcchHHHHHHHH
Confidence 3589999999999999999998877 45655554345555554421 111 11221 221122334556
Q ss_pred HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE--
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-- 250 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-- 250 (442)
+.+|+++|.+.+-..+.....++... ..++.+.+.++.+++.|+..|.+++.-....+.+.+.++++.+.+.|++.
T Consensus 156 ~~aGld~VnISLDsl~~e~~~~itr~--~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~ 233 (373)
T PLN02951 156 KEAGLTSLNISLDTLVPAKFEFLTRR--KGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRF 233 (373)
T ss_pred HhCCCCeEEEeeccCCHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 67899999987665443332333211 12467778888999999743555432122345678999999999988753
Q ss_pred EeccCccccc--C--HHHHHHHHHHHHHhCC
Q 013498 251 LNIPDTVGIT--M--PTEFGKLIADIKANTP 277 (442)
Q Consensus 251 I~laDT~G~~--~--P~~v~~li~~l~~~~p 277 (442)
|.+--.-|.. . .....++.+.+.+.+|
T Consensus 234 ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~ 264 (373)
T PLN02951 234 IEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP 264 (373)
T ss_pred EEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence 3333332221 1 1124566666666654
No 96
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=96.20 E-value=0.16 Score=53.00 Aligned_cols=170 Identities=19% Similarity=0.136 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHH-HHHHHhCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA-WEAVKYAK 176 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a-~e~l~~~g 176 (442)
.+.++.+++++.|.+.++..||+|.|-....-.+.++.|.+...+. +.++-+ ...|+... .+.+..+|
T Consensus 182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~~--------~I~~DL---K~~Di~~~vv~~~a~aG 250 (391)
T PRK13307 182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPDA--------FIVADL---KTLDTGNLEARMAADAT 250 (391)
T ss_pred CCHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCCC--------eEEEEe---cccChhhHHHHHHHhcC
Confidence 5688899999999988888999998744333357788887752221 122222 22344433 44555679
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc--
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 254 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la-- 254 (442)
.+.+.+.....+ +.+.++++.+|+.|+. +.+.+-. ..++.+.+. .+ ..++|.|.+-
T Consensus 251 AD~vTVH~ea~~---------------~ti~~ai~~akk~Gik-vgVD~ln-p~tp~e~i~----~l-~~~vD~Vllht~ 308 (391)
T PRK13307 251 ADAVVISGLAPI---------------STIEKAIHEAQKTGIY-SILDMLN-VEDPVKLLE----SL-KVKPDVVELHRG 308 (391)
T ss_pred CCEEEEeccCCH---------------HHHHHHHHHHHHcCCE-EEEEEcC-CCCHHHHHH----Hh-hCCCCEEEEccc
Confidence 998877654432 3456788899999984 5552211 123333333 33 5588877665
Q ss_pred -CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 255 -DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 255 -DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
|.-+. +. ..+.++.+++... ++.|.+ |-|....|.-.++++||+.+
T Consensus 309 vdp~~~--~~-~~~kI~~ikk~~~---~~~I~V----dGGI~~eti~~l~~aGADiv 355 (391)
T PRK13307 309 IDEEGT--EH-AWGNIKEIKKAGG---KILVAV----AGGVRVENVEEALKAGADIL 355 (391)
T ss_pred cCCCcc--cc-hHHHHHHHHHhCC---CCcEEE----ECCcCHHHHHHHHHcCCCEE
Confidence 32232 21 2346777777533 234554 34777788888999999976
No 97
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.19 E-value=0.43 Score=45.34 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEc-cCCCChhHHHHHHHHHHHhcccccccCCccceEe-eecccchhhHHHHHHHHHhCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAG-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG-~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e~l~~~g 176 (442)
+.++-.++++...+.|.+.|-+- -+.......+.++.+.+... .|.+. ++.+ +..+++.+.+ +|
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~---------iPi~~~~~i~-~~~~v~~~~~----~G 94 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS---------LPVLRKDFII-DPYQIYEARA----AG 94 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC---------CCEEECCeec-CHHHHHHHHH----cC
Confidence 44567899999999999988662 12222223344444444321 13332 2222 3345666655 59
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCc
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT 256 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT 256 (442)
.+.|++..+.-+ .+.+.+++++++..|+. +.+.+ ++++. ++.+.+.|++.+.+-..
T Consensus 95 ad~v~l~~~~~~--------------~~~~~~~~~~~~~~g~~-~~v~v-----~~~~e----~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 95 ADAVLLIVAALD--------------DEQLKELYELARELGME-VLVEV-----HDEEE----LERALALGAKIIGINNR 150 (217)
T ss_pred CCEEEEeeccCC--------------HHHHHHHHHHHHHcCCe-EEEEE-----CCHHH----HHHHHHcCCCEEEEeCC
Confidence 999987654322 14556778888889985 43333 13343 55666789999988877
Q ss_pred ccccCHHHHHHHHHHHHHhCC-CCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 257 VGITMPTEFGKLIADIKANTP-GIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 257 ~G~~~P~~v~~li~~l~~~~p-~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.|...+..+ +++..+++.+| +. .+..+.-.++ ..|....+++||+.|
T Consensus 151 ~~~~~~~~~-~~~~~l~~~~~~~~-pvia~gGI~s-----~edi~~~~~~Ga~gv 198 (217)
T cd00331 151 DLKTFEVDL-NTTERLAPLIPKDV-ILVSESGIST-----PEDVKRLAEAGADAV 198 (217)
T ss_pred CccccCcCH-HHHHHHHHhCCCCC-EEEEEcCCCC-----HHHHHHHHHcCCCEE
Confidence 766666666 67788877764 21 1333333332 367778888898776
No 98
>PRK09234 fbiC FO synthase; Reviewed
Probab=96.15 E-value=0.2 Score=57.30 Aligned_cols=201 Identities=17% Similarity=0.051 Sum_probs=121.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChh-HH----HHHHHHHHHhcccccccCCccceEeeeccc--------c
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC--------N 161 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d~----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~--------~ 161 (442)
...++.++.++.++...+.|+..|-+-. +..|+ +. +.++.|.+..+. ..+.++++. .
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~g-G~~p~~~~~~y~~lir~IK~~~p~---------i~i~afsp~Ei~~~a~~~ 623 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQG-GIHPELPGTGYADLVRAVKARVPS---------MHVHAFSPMEIVNGAARL 623 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcCHHHHHHHHHHHHHhCCC---------eeEEecChHHHHHHHHHc
Confidence 5679999999999999999999887631 22221 22 345555543211 234444321 1
Q ss_pred hhhHHHHHHHHHhCCCCEEEE-eecCChHHHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHT-FIATSGIHMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i-~~~~Sd~h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~ 237 (442)
--.++..++.++++|++.+.- .-...+-.+...+ +.+.++. .+.++.|+++|++ ++-+++.+.--+++..+
T Consensus 624 Gl~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~p~k~~~~~w----le~i~~Ah~lGi~-~~stmm~G~~Et~edrv 698 (843)
T PRK09234 624 GLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEW----IEVVTTAHEVGLR-SSSTMMYGHVDTPRHWV 698 (843)
T ss_pred CCCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcCCCCCCHHHH----HHHHHHHHHcCCC-cccceEEcCCCCHHHHH
Confidence 112344566778889988742 1112222222233 2344444 4688889999996 55444444445678888
Q ss_pred HHHHHHHHcCCcE------Ee----ccCc--------ccccCHHHHHHHHHHHHHhCCC-CcceeEEEeecCCcchHHHH
Q 013498 238 EILGEVIKVGATT------LN----IPDT--------VGITMPTEFGKLIADIKANTPG-IENVVISTHCQNDLGLSTAN 298 (442)
Q Consensus 238 ~~~~~~~~~Gad~------I~----laDT--------~G~~~P~~v~~li~~l~~~~p~-~~~v~i~~H~HNDlGLA~AN 298 (442)
+.+..+.+.+.+. |- -.+| ....++.+.-++++..|=.+|+ +.++.-++ ..+|.. -
T Consensus 699 ~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w---v~lg~~--~ 773 (843)
T PRK09234 699 AHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW---VKLGVE--G 773 (843)
T ss_pred HHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh---hhcCHH--H
Confidence 8898998887642 11 2233 1237788888888888776763 22344444 345543 3
Q ss_pred HHHHHHhCCCEEEeccc
Q 013498 299 TIAGACAGARQVEVTIN 315 (442)
Q Consensus 299 alaAl~aGa~~vd~Tv~ 315 (442)
+..++.+||+-+.+|+.
T Consensus 774 ~q~~L~~GaNDlgGtl~ 790 (843)
T PRK09234 774 TRAMLRGGANDLGGTLM 790 (843)
T ss_pred HHHHHhcCCcCcccccc
Confidence 57889999999977753
No 99
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.15 E-value=0.4 Score=45.71 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec-ccchhhHHHHHHHHHhCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~e~l~~~g 176 (442)
-+.++-+++++.|.+.|++.||+.+ .++...+.++.+.+..+. +.+.|-+ -.+.++++.++++ |
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~--~~~~~~~~i~~l~~~~~~---------~~~iGaGTV~~~~~~~~a~~a----G 83 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPL--NSPDPFDSIAALVKALGD---------RALIGAGTVLSPEQVDRLADA----G 83 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHcCC---------CcEEeEEecCCHHHHHHHHHc----C
Confidence 4789999999999999999999975 455566788888775432 1122222 3467888888775 8
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCc
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT 256 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT 256 (442)
.+.++. |..+. +.+++++..|.. +..++ .+++++ ..+.++|+|.|.+--+
T Consensus 84 A~fivs--p~~~~------------------~v~~~~~~~~~~-~~~G~-----~t~~E~----~~A~~~Gad~vk~Fpa 133 (206)
T PRK09140 84 GRLIVT--PNTDP------------------EVIRRAVALGMV-VMPGV-----ATPTEA----FAALRAGAQALKLFPA 133 (206)
T ss_pred CCEEEC--CCCCH------------------HHHHHHHHCCCc-EEccc-----CCHHHH----HHHHHcCCCEEEECCC
Confidence 887764 33331 456677788874 55553 334433 4556789999876222
Q ss_pred ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 257 VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 257 ~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
+.+-|+. ++.+++.+|. ++++..= -|.-..|.-.-+++|++.|=
T Consensus 134 -~~~G~~~----l~~l~~~~~~--~ipvvai----GGI~~~n~~~~~~aGa~~va 177 (206)
T PRK09140 134 -SQLGPAG----IKALRAVLPP--DVPVFAV----GGVTPENLAPYLAAGAAGFG 177 (206)
T ss_pred -CCCCHHH----HHHHHhhcCC--CCeEEEE----CCCCHHHHHHHHHCCCeEEE
Confidence 2233544 4445555531 1333322 26777899999999999873
No 100
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=96.14 E-value=0.25 Score=48.29 Aligned_cols=203 Identities=18% Similarity=0.162 Sum_probs=102.7
Q ss_pred HHHHHHHHhHcCCCEEEEcc--CC-----CChhHHHHHHHHHHHhcccccccCCccceEeee----cccc-------hhh
Q 013498 103 KLDIARQLAKLGVDIIEAGF--PA-----ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL----SRCN-------ERD 164 (442)
Q Consensus 103 kl~ia~~L~~~GV~~IEvG~--p~-----~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~----~r~~-------~~d 164 (442)
-.+.++.+.++|++.||+.. |. ....+.+.++.+.+..+-.+. .+.+...++ .... .+.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~---s~~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII---GYTPETNGYPYNMMLGDEHMRRESLDM 91 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE---EecCcccCcCccccCCCHHHHHHHHHH
Confidence 44556777888999999952 21 122344555555544322111 000000000 0011 123
Q ss_pred HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC--C--CCCCCHHHHHHHH
Q 013498 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--D--AGRSDRKFLYEIL 240 (442)
Q Consensus 165 I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--d--asr~d~~~l~~~~ 240 (442)
+++.++..+..|.+.|.+........ .......+...+.+.+++++|++.|+. +.+-.. . ..-.+++.+.+++
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~~~~~~~~~t~~~~~~l~ 168 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMD-LILEPLTPYESNVVCNANDVLHAL 168 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCCCCcccccCCHHHHHHHH
Confidence 44555666667888876643211000 000112356677788889999999974 554321 1 1122456666665
Q ss_pred HHHHHcCCc-EEeccCcccc-cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccc
Q 013498 241 GEVIKVGAT-TLNIPDTVGI-TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (442)
Q Consensus 241 ~~~~~~Gad-~I~laDT~G~-~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlG 318 (442)
+.+ +-+ .-.+.|+.=. ....++.+.++.+ ++ -...+|.+|..+-- + .-.-.|
T Consensus 169 ~~~---~~~~v~~~~D~~h~~~~~~~~~~~i~~~----~~---rI~~vHi~D~~~~~---------------~-~~~~pG 222 (275)
T PRK09856 169 ALV---PSPRLFSMVDICAPYVQAEPVMSYFDKL----GD---KLRHLHIVDSDGAS---------------D-THYIPG 222 (275)
T ss_pred HHc---CCCcceeEEeecchhcCCCCHHHHHHHh----CC---cEEEEEEEcCCCCC---------------C-CCcCCC
Confidence 544 422 2233477432 1222333333333 22 35789999876520 1 111234
Q ss_pred cccCcccHHHHHHHHHhcccc
Q 013498 319 ERAGNASLEEVVMAFKCRGEH 339 (442)
Q Consensus 319 eraGNa~lEevv~~L~~~g~~ 339 (442)
+ |+.+..+++..|+..|.+
T Consensus 223 ~--G~id~~~i~~~L~~~gy~ 241 (275)
T PRK09856 223 E--GKMPLRELMRDIIDRGYE 241 (275)
T ss_pred C--CCCCHHHHHHHHHHcCCC
Confidence 4 899999999999987643
No 101
>PRK06801 hypothetical protein; Provisional
Probab=96.12 E-value=1 Score=45.17 Aligned_cols=190 Identities=19% Similarity=0.162 Sum_probs=119.4
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEeeeccc-
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC- 160 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~- 160 (442)
++.+..+ ..++.+....+.+.-.+.+.+.|=-.++.... +. ...++.+++.. -+|+..-+=-+
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpV~lHlDH~~ 85 (286)
T PRK06801 15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARH---------DIPVVLNLDHGL 85 (286)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHC---------CCCEEEECCCCC
Confidence 3444443 24688999999999999999977443443221 11 23455555432 23433322211
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--c---c-CC-------
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--S---P-ED------- 227 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~---~-ed------- 227 (442)
..+.++.|++. |++.|.+= .| ..+.+|+++..++.+++|+..|.. |+. + - ++
T Consensus 86 ~~e~i~~Ai~~----GftSVm~D--~S--------~l~~eeNi~~t~~v~~~a~~~gv~-VE~ElG~vgg~e~~v~~~~~ 150 (286)
T PRK06801 86 HFEAVVRALRL----GFSSVMFD--GS--------TLEYEENVRQTREVVKMCHAVGVS-VEAELGAVGGDEGGALYGEA 150 (286)
T ss_pred CHHHHHHHHHh----CCcEEEEc--CC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEeecCcccCCCCCcccCCc
Confidence 45666767664 88887652 22 236789999999999999999984 532 1 1 11
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc----c--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHH
Q 013498 228 --AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI----T--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANT 299 (442)
Q Consensus 228 --asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~----~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANa 299 (442)
...++|+...++++ +.|+|.+.+ ++|. . .|.--.++++.+++.++ +|+..|.= -|....|.
T Consensus 151 ~~~~~T~pe~a~~f~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~----~PLVlHGG--Sgi~~e~~ 219 (286)
T PRK06801 151 DSAKFTDPQLARDFVD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG----LPLVLHGG--SGISDADF 219 (286)
T ss_pred ccccCCCHHHHHHHHH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC----CCEEEECC--CCCCHHHH
Confidence 12556776665554 469998777 3332 1 23233456777777663 67877664 46778999
Q ss_pred HHHHHhCCCEEEec
Q 013498 300 IAGACAGARQVEVT 313 (442)
Q Consensus 300 laAl~aGa~~vd~T 313 (442)
..++.+|++-|+..
T Consensus 220 ~~~i~~Gi~KINv~ 233 (286)
T PRK06801 220 RRAIELGIHKINFY 233 (286)
T ss_pred HHHHHcCCcEEEeh
Confidence 99999999998653
No 102
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.09 E-value=1.7 Score=43.25 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKL-GVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~-GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (442)
.+..+.-.++++.|.+. |++-|=+ | ++..+.+|+. .++...+... +.++.|++.+..+.++.-...
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-------~~~~viagv~~~~~~~ai~~a 89 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-------GKVTLIAHVGSLNLKESQELA 89 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCeEEeccCCCCHHHHHHHH
Confidence 37888889999999999 9998866 3 3555666644 5565555532 234677777665555543333
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC--CCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas--r~d~~~l~~~~~~~~~~G 247 (442)
+..+.+|++.+.+..|.. ++.+.+++++-..+.++... ++.-+-++....+ ..+++.+.+++ + -
T Consensus 90 ~~a~~~Gad~v~~~~P~y-------~~~~~~~i~~~~~~v~~a~~--~lpi~iYn~P~~tg~~l~~~~~~~L~----~-~ 155 (288)
T cd00954 90 KHAEELGYDAISAITPFY-------YKFSFEEIKDYYREIIAAAA--SLPMIIYHIPALTGVNLTLEQFLELF----E-I 155 (288)
T ss_pred HHHHHcCCCEEEEeCCCC-------CCCCHHHHHHHHHHHHHhcC--CCCEEEEeCccccCCCCCHHHHHHHh----c-C
Confidence 444678999887665543 34577777666666554321 4443455654433 44566555544 3 4
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
...+.+.|+.|- ...+.+++ +..++ +. .-+-+.++ ..+.++..|++.. +.| .+|.-.|
T Consensus 156 pnivgiK~s~~d--~~~~~~~~----~~~~~--~~-~v~~G~d~------~~~~~~~~G~~G~---i~~----~~n~~P~ 213 (288)
T cd00954 156 PNVIGVKFTATD--LYDLERIR----AASPE--DK-LVLNGFDE------MLLSALALGADGA---IGS----TYNVNGK 213 (288)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC--Cc-EEEEechH------HHHHHHHcCCCEE---EeC----hhhhCHH
Confidence 689999999884 34444443 33442 11 22333332 2345678898764 222 4567777
Q ss_pred HHHHHHHh
Q 013498 328 EVVMAFKC 335 (442)
Q Consensus 328 evv~~L~~ 335 (442)
.++...+.
T Consensus 214 ~~~~l~~~ 221 (288)
T cd00954 214 RYRKIFEA 221 (288)
T ss_pred HHHHHHHH
Confidence 77666654
No 103
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.06 E-value=0.48 Score=45.08 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.++-+++++.|.+.|++.||+.+ .+|+-.+.++.+++..+. ..|-+=+-.+.++.+.++++ |.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~--~tp~a~~~I~~l~~~~~~---------~~vGAGTVl~~e~a~~ai~a----GA 77 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITL--RTPAALDAIRAVAAEVEE---------AIVGAGTILNAKQFEDAAKA----GS 77 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCccHHHHHHHHHHHCCC---------CEEeeEeCcCHHHHHHHHHc----CC
Confidence 4789999999999999999999987 467677888888765422 11222223477888888775 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc--C
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP--D 255 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la--D 255 (442)
+.+.. |..+ .+.+++++++|+. +. .+-.+|.++. .+.++|++.|-+- +
T Consensus 78 ~FivS--P~~~------------------~~vi~~a~~~~i~-~i-----PG~~TptEi~----~A~~~Ga~~vK~FPa~ 127 (201)
T PRK06015 78 RFIVS--PGTT------------------QELLAAANDSDVP-LL-----PGAATPSEVM----ALREEGYTVLKFFPAE 127 (201)
T ss_pred CEEEC--CCCC------------------HHHHHHHHHcCCC-Ee-----CCCCCHHHHH----HHHHCCCCEEEECCch
Confidence 65432 2221 2578889999975 22 1234444433 5568999988762 2
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~ 308 (442)
.+|- ..+++.|+.-+|++ ++- -.-|...-|.-.-+.+|+.
T Consensus 128 ~~GG------~~yikal~~plp~~---~l~----ptGGV~~~n~~~~l~ag~~ 167 (201)
T PRK06015 128 QAGG------AAFLKALSSPLAGT---FFC----PTGGISLKNARDYLSLPNV 167 (201)
T ss_pred hhCC------HHHHHHHHhhCCCC---cEE----ecCCCCHHHHHHHHhCCCe
Confidence 3210 36788888888853 333 2346667799999999865
No 104
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=96.04 E-value=0.89 Score=46.52 Aligned_cols=222 Identities=19% Similarity=0.132 Sum_probs=136.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCC-ChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA-SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~-~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
...++.++.++-|+...+.|.....++.-.- .+.+.+.+..+++.+.+.+ ++ ...+.++..+.+..+. ++
T Consensus 81 ~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~----~l-e~c~slG~l~~eq~~~----L~ 151 (335)
T COG0502 81 RKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEEL----GL-EVCASLGMLTEEQAEK----LA 151 (335)
T ss_pred hhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhc----Cc-HHhhccCCCCHHHHHH----HH
Confidence 3568999999999999999976666654322 2345555555555443211 22 2344455555555443 45
Q ss_pred hCCCCEEEEeecCChHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC-CcEE
Q 013498 174 YAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTL 251 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~-~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G-ad~I 251 (442)
.+|++++...+-+|+-+-.. .-..|.++ -.+.++.+|+.|++ |+-+..-+---+.+.-.+++..+.+.. ++.|
T Consensus 152 ~aGvd~ynhNLeTs~~~y~~I~tt~t~ed----R~~tl~~vk~~Gi~-vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsV 226 (335)
T COG0502 152 DAGVDRYNHNLETSPEFYENIITTRTYED----RLNTLENVREAGIE-VCSGGIVGLGETVEDRAELLLELANLPTPDSV 226 (335)
T ss_pred HcChhheecccccCHHHHcccCCCCCHHH----HHHHHHHHHHcCCc-cccceEecCCCCHHHHHHHHHHHHhCCCCCee
Confidence 56999988766666543322 22445554 44688999999996 665443222334566667777888877 7765
Q ss_pred ec------cCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccccc
Q 013498 252 NI------PDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (442)
Q Consensus 252 ~l------aDT----~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGera 321 (442)
-| .+| .=-+.|.++-+.|+..|=.+|+.. ++++ =..-.|.--..--|+.+||+.|=++. .+.-..
T Consensus 227 PIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~-Ir~s---~gr~~~~~~~q~~~~~aGansi~~g~-~~ltt~ 301 (335)
T COG0502 227 PINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSM-IRLS---AGRETMLPELQALAFMAGANSIFVGD-KYLTTP 301 (335)
T ss_pred eeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcce-eEcc---CCcccccHHHHHHHHHhccceeeecc-eEeecC
Confidence 43 233 335788899999999999999742 5553 11112222335677888999886555 222223
Q ss_pred CcccHHHHHHHHHhc
Q 013498 322 GNASLEEVVMAFKCR 336 (442)
Q Consensus 322 GNa~lEevv~~L~~~ 336 (442)
| .+.|+-...++..
T Consensus 302 ~-~~~e~D~~~l~~l 315 (335)
T COG0502 302 G-PDEDKDLELLKDL 315 (335)
T ss_pred C-CCchhHHHHHHHc
Confidence 3 6677777777665
No 105
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=96.03 E-value=0.34 Score=47.60 Aligned_cols=202 Identities=15% Similarity=0.094 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCC---------CChhHHHHHHHHHHHhcccccccCCccceEee-------eccc
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-------LSRC 160 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~---------~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~-------~~r~ 160 (442)
.++.++.++ .+.++|++.||+.... .++++.+.++.+.+..+-.+ +.++. ++..
T Consensus 20 ~~~~~e~~~---~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i-------~~~~~~~~~~~~~~~~ 89 (283)
T PRK13209 20 GECWLEKLA---IAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRV-------NSMCLSAHRRFPLGSE 89 (283)
T ss_pred CCCHHHHHH---HHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCce-------eEEecccccccCCCCC
Confidence 356666654 4557899999996432 14455566666655432211 11111 1111
Q ss_pred c-------hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-CCCCCC
Q 013498 161 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSD 232 (442)
Q Consensus 161 ~-------~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-dasr~d 232 (442)
+ .+.++++++..+..|.+.|.+.-..... ........+...+.+.+++++|++.|+. +.+-.. ...-.+
T Consensus 90 ~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~~~~~ 166 (283)
T PRK13209 90 DDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVT-LAFEIMDTPFMNS 166 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCcccCC
Confidence 1 1235556676677788877653111000 0000112234466778888899999873 555321 222235
Q ss_pred HHHHHHHHHHHHHcCCcEEecc-CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 233 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~la-DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
++.+.++++. .+-+.+.++ |+.=...-. .+....++. .. +-...+|.+|..+- +-+.
T Consensus 167 ~~~~~~ll~~---v~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~---~~i~~vHikD~~~~-----------~~~~-- 224 (283)
T PRK13209 167 ISKALGYAHY---LNSPWFQLYPDIGNLSAWD--NDVQMELQA-GI---GHIVAFHVKDTKPG-----------VFKN-- 224 (283)
T ss_pred HHHHHHHHHH---hCCCccceEeccchHHHhc--CCHHHHHHh-Cc---CcEEEEEeccCCCC-----------CCce--
Confidence 5555555544 344455443 543111100 012223333 22 24578888886431 1111
Q ss_pred ecccccccccCcccHHHHHHHHHhccc
Q 013498 312 VTINGIGERAGNASLEEVVMAFKCRGE 338 (442)
Q Consensus 312 ~Tv~GlGeraGNa~lEevv~~L~~~g~ 338 (442)
..+|+ |..+.+.++..|+..|.
T Consensus 225 ---~~~G~--G~id~~~i~~~L~~~gy 246 (283)
T PRK13209 225 ---VPFGE--GVVDFERCFKTLKQSGY 246 (283)
T ss_pred ---eCCCC--CccCHHHHHHHHHHcCC
Confidence 23344 78999999999998764
No 106
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=95.98 E-value=1.1 Score=44.90 Aligned_cols=185 Identities=17% Similarity=0.142 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----h-HHHHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----E-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----~-d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=--++.... + -.+.++.+++... .+|...-+.-+ ..+.++.++
T Consensus 23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~vpv~lhlDH~~~~e~i~~ai 94 (282)
T TIGR01859 23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS--------IVPVALHLDHGSSYESCIKAI 94 (282)
T ss_pred ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC--------CCeEEEECCCCCCHHHHHHHH
Confidence 4688999999999999999987655553221 1 1234455554321 13544333222 344555565
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--cc----CC------CCCCCHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SP----ED------AGRSDRKFLY 237 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~----ed------asr~d~~~l~ 237 (442)
+ .|++.|.+= .| ..+.+|+++..++++++++..|.. |+. +. || .+.++++.+.
T Consensus 95 ~----~Gf~sVmid--~s--------~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~~gg~ed~~~g~~~~~t~~eea~ 159 (282)
T TIGR01859 95 K----AGFSSVMID--GS--------HLPFEENLALTKKVVEIAHAKGVS-VEAELGTLGGIEDGVDEKEAELADPDEAE 159 (282)
T ss_pred H----cCCCEEEEC--CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCcCccccccccccccCCHHHHH
Confidence 5 388876542 22 236789999999999999999984 653 22 22 3466777765
Q ss_pred HHHHHHHHcCCcEEecc-Cc-cccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 238 EILGEVIKVGATTLNIP-DT-VGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~la-DT-~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
++.+ +.|+|.+.++ -| -|.. .|.--.++++.+++.++ +||-. |..-|+-.-|...++++|++-|+..
T Consensus 160 ~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~----iPlv~--hGgSGi~~e~i~~~i~~Gi~kiNv~ 230 (282)
T TIGR01859 160 QFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN----IPLVL--HGASGIPEEQIKKAIKLGIAKINID 230 (282)
T ss_pred HHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC----CCEEE--ECCCCCCHHHHHHHHHcCCCEEEEC
Confidence 5553 3589977743 11 1111 13333556777887763 66764 5566788889999999999998653
No 107
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.98 E-value=1.2 Score=44.59 Aligned_cols=164 Identities=11% Similarity=-0.018 Sum_probs=102.3
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHH---HHH---hCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCCC--CC
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHM---EHK---LRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RS 231 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~---~~~---l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-edas--r~ 231 (442)
+...+.+.++.+..+|+..|++-..+.+-++ ..+ .-.+.+|..++++.+++. +. +.+ +.+.. .|+. ..
T Consensus 90 ~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~-~~~-~~IiARTDa~~~~~ 166 (285)
T TIGR02320 90 NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QT-TED-FMIIARVESLILGK 166 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-cc-CCC-eEEEEecccccccC
Confidence 5667777777777789999988665544321 111 113677777776655444 22 333 33322 2321 23
Q ss_pred CHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 232 d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
..+..++-++...++|||.|.+. .+..+++++.++++.+...+|+ +|+-+.. ...+.-. .-.--+.|++.|-
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~---~pl~~~~-~~~~~~~--~~eL~~lG~~~v~ 238 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPR---TPLVIVP-TSYYTTP--TDEFRDAGISVVI 238 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCC---CCEEEec-CCCCCCC--HHHHHHcCCCEEE
Confidence 57788888999999999999997 3468899999999999877764 4554322 2223222 3344466999975
Q ss_pred ecccccccccCcccHHHHHHHHHhcc
Q 013498 312 VTINGIGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 312 ~Tv~GlGeraGNa~lEevv~~L~~~g 337 (442)
....- -|+-..++++++..+...|
T Consensus 239 ~~~~~--~~aa~~a~~~~~~~~~~~g 262 (285)
T TIGR02320 239 YANHL--LRAAYAAMQQVAERILEHG 262 (285)
T ss_pred EhHHH--HHHHHHHHHHHHHHHHHcC
Confidence 43332 3666667777777666543
No 108
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=95.95 E-value=1 Score=43.59 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=98.3
Q ss_pred HHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec---c------cc----hhhHHHHHHH
Q 013498 105 DIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS---R------CN----ERDIKTAWEA 171 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~---r------~~----~~dI~~a~e~ 171 (442)
+.++.+.++|++.||+.+|. ..+.+.++.+.+..+-.+.. +......|. | .. .+.++++++.
T Consensus 18 e~~~~~~e~G~~~vEl~~~~--~~~~~~l~~~l~~~gl~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 92 (254)
T TIGR03234 18 ERFAAAAQAGFTGVEYLFPY--DWDAEALKARLAAAGLEQVL---FNLPAGDWAAGERGIACLPGREEEFREGVALAIAY 92 (254)
T ss_pred HHHHHHHHcCCCEEEecCCc--cCCHHHHHHHHHHcCCeEEE---EeCCCCccccCCCccccCCccHHHHHHHHHHHHHH
Confidence 44555668899999998764 33455666666543321110 000000011 0 00 1334456666
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCeEEEccCC---C---CCCCHHHHHHHHH
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPED---A---GRSDRKFLYEILG 241 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s----~~e~l~~~~~~v~~ar~~G~~~V~f~~ed---a---sr~d~~~l~~~~~ 241 (442)
.+..|.+.|.+.....+ .+.+ .+..++.+.+++++|++.|+. +.+-+.. . .=.+++...++++
T Consensus 93 a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~~~l~t~~~~~~li~ 165 (254)
T TIGR03234 93 ARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPGFFLTTTEQALAVID 165 (254)
T ss_pred HHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCCChhcCHHHHHHHHH
Confidence 66678888876533211 0111 234456678888999999974 5553211 1 1134455555554
Q ss_pred HHHHcCCcEEec-cCcccccCH-HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 242 EVIKVGATTLNI-PDTVGITMP-TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 242 ~~~~~Gad~I~l-aDT~G~~~P-~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
. .+-+.+.+ .|+.=...- +...++++.+.+ -...+|..|+.|. .-.|
T Consensus 166 ~---v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~~-------~i~~vHi~D~~~~--------------------~~~G- 214 (254)
T TIGR03234 166 D---VGRENLKLQYDLYHMQRMGGDLARTLAAYAA-------HIGHVQIADNPGR--------------------HEPG- 214 (254)
T ss_pred H---hCCCCEeEeeehhhhhhhCCCHHHHHHHhhc-------cEeEEEeCCCCCC--------------------CCCC-
Confidence 4 44444433 355422210 123334444332 3467888775321 0123
Q ss_pred ccCcccHHHHHHHHHhccc
Q 013498 320 RAGNASLEEVVMAFKCRGE 338 (442)
Q Consensus 320 raGNa~lEevv~~L~~~g~ 338 (442)
.|+.+..+++..|+..|.
T Consensus 215 -~G~id~~~il~~L~~~gy 232 (254)
T TIGR03234 215 -TGEINYRFLFAVLDRLGY 232 (254)
T ss_pred -CCccCHHHHHHHHHHCCC
Confidence 589999999999998753
No 109
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.90 E-value=0.38 Score=48.23 Aligned_cols=124 Identities=13% Similarity=0.131 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc--------------cccCH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV--------------GITMP 262 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~--------------G~~~P 262 (442)
.+.+|.++.+...++. ..++ |.+..+.. -++..+.+.++.+.++|+..|+|-|.+ ....+
T Consensus 61 ~~~~e~~~~~~~I~~a---~~~P-v~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ 134 (285)
T TIGR02320 61 ASWTQRLDVVEFMFDV---TTKP-IILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASV 134 (285)
T ss_pred CCHHHHHHHHHHHHhh---cCCC-EEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCH
Confidence 3567777765554433 3455 88888554 699999999999999999999999975 35678
Q ss_pred HHHHHHHHHHHHhCCCCcceeEEEe----e-cCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 263 TEFGKLIADIKANTPGIENVVISTH----C-QNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 263 ~~v~~li~~l~~~~p~~~~v~i~~H----~-HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
++..+.|+..++.-.+. ++.|-.. . ...+--|+.-+.++.+||||.|-.- .+..+.|++....+
T Consensus 135 ee~~~kI~Aa~~a~~~~-~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~-------~~~~~~~ei~~~~~ 203 (285)
T TIGR02320 135 EEFCGKIRAGKDAQTTE-DFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH-------SRKKDPDEILEFAR 203 (285)
T ss_pred HHHHHHHHHHHHhccCC-CeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec-------CCCCCHHHHHHHHH
Confidence 88888898887752221 3666555 2 2245567778889999999998654 23455666554444
No 110
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.88 E-value=0.85 Score=45.47 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=78.3
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHH-HHHhCCCHHHHHHHHHHHHHHHHHc-CCC-eEEEccCCCCCCCHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~-~~~l~~s~~e~l~~~~~~v~~ar~~-G~~-~V~f~~edasr~d~~~l 236 (442)
...++...+.+.+..+|.+.|.+.+++..... -..++.+. +.+.+.++.+|+. ++. .|.+++ +.+..
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~----~~~~eiv~~vr~~~~~Pv~vKl~~------~~~~~ 168 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP----EAVAEIVKAVKKATDVPVIVKLTP------NVTDI 168 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH----HHHHHHHHHHHhccCCCEEEEeCC------CchhH
Confidence 35677777777777789998877554322100 01123333 4445566666665 554 133333 22457
Q ss_pred HHHHHHHHHcCCcEEeccCcccccC----------------------HHHHHHHHHHHHHhCCCCcceeEEEeecCCcch
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITM----------------------PTEFGKLIADIKANTPGIENVVISTHCQNDLGL 294 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~----------------------P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL 294 (442)
.++++.+.++|+|.|.+.+|.+... .....++++.+++.++ ++|.. .-|.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~----ipii~----~GGI 240 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE----IPIIG----VGGI 240 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC----CCEEE----ECCC
Confidence 7889999999999998876653221 0113466777777652 33332 1232
Q ss_pred -HHHHHHHHHHhCCCEEEec
Q 013498 295 -STANTIAGACAGARQVEVT 313 (442)
Q Consensus 295 -A~ANalaAl~aGa~~vd~T 313 (442)
--..+..++++||+.|..+
T Consensus 241 ~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 241 ASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred CCHHHHHHHHHcCCCEEEEc
Confidence 2356777778888877654
No 111
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=95.86 E-value=1.3 Score=42.76 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=110.8
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc-c
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-C 160 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~ 160 (442)
.+|-|+ .+-..|.++..++++...+.|+..+-+ +|. +++...+.+.++ . ..+..+.+|-. .
T Consensus 9 ~ID~T~------L~p~~t~~~i~~~~~~A~~~~~~avcv-~p~-------~v~~a~~~l~~~---~-v~v~tVigFP~G~ 70 (221)
T PRK00507 9 YIDHTL------LKPEATEEDIDKLCDEAKEYGFASVCV-NPS-------YVKLAAELLKGS---D-VKVCTVIGFPLGA 70 (221)
T ss_pred hhhhcc------CCCCCCHHHHHHHHHHHHHhCCeEEEE-CHH-------HHHHHHHHhCCC---C-CeEEEEecccCCC
Confidence 455555 344688999999999999999988888 342 233333333221 0 11122223311 1
Q ss_pred c-----hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 161 N-----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 161 ~-----~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
+ ..+++.|++ .|.+.|.+.+..+-+ +. ..+++.+.+.+..+.+ .+. .+-+-+| ....+.+
T Consensus 71 ~~~~~K~~e~~~Ai~----~GA~EiD~Vin~~~~------~~g~~~~v~~ei~~v~~~~--~~~-~lKvIlE-t~~L~~e 136 (221)
T PRK00507 71 NTTAVKAFEAKDAIA----NGADEIDMVINIGAL------KSGDWDAVEADIRAVVEAA--GGA-VLKVIIE-TCLLTDE 136 (221)
T ss_pred ChHHHHHHHHHHHHH----cCCceEeeeccHHHh------cCCCHHHHHHHHHHHHHhc--CCc-eEEEEee-cCcCCHH
Confidence 1 123333333 488999988776642 22 4566666666665543 343 3555454 3455678
Q ss_pred HHHHHHHHHHHcCCcEEeccCcc--cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 235 FLYEILGEVIKVGATTLNIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~--G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.+.++++.+.++|+|.|--.-+. |-.+|+.++.+.+.+...+ ++..=-.-- -...+++-+++||+.|-+
T Consensus 137 ~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~--------~IKasGGIr-t~~~a~~~i~aGA~riGt 207 (221)
T PRK00507 137 EKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRV--------GVKASGGIR-TLEDALAMIEAGATRLGT 207 (221)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCc--------eEEeeCCcC-CHHHHHHHHHcCcceEcc
Confidence 88999999999999966655554 3467777666655543222 222111000 156678888999998844
Q ss_pred c
Q 013498 313 T 313 (442)
Q Consensus 313 T 313 (442)
|
T Consensus 208 S 208 (221)
T PRK00507 208 S 208 (221)
T ss_pred C
Confidence 3
No 112
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.86 E-value=0.22 Score=48.83 Aligned_cols=208 Identities=17% Similarity=0.141 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCC---------CChhHHHHHHHHHHHhcccccccCCccceEe--e-----eccc
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPA---------ASKEDFEAVRTIAKEVGNAVDAESGYVPVIC--G-----LSRC 160 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~---------~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~--~-----~~r~ 160 (442)
.++.++.+ +.+.++|++.||+.... .++++...++.+.+..+-. ++.++ + ++..
T Consensus 15 ~~~~~e~~---~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~-------i~~~~~~~~~~~~~~~~ 84 (284)
T PRK13210 15 HLSWEERL---VFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVR-------IPSMCLSGHRRFPFGSR 84 (284)
T ss_pred CCCHHHHH---HHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCC-------ceEEecccccCcCCCCC
Confidence 35666655 45557799999996431 1233455565555543321 11111 1 1111
Q ss_pred c-------hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCC
Q 013498 161 N-------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSD 232 (442)
Q Consensus 161 ~-------~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d 232 (442)
. .+.++.+++..+..|.+.|.+... +......-....++.++.+.+++++|++.|+. +.+-... ..-.+
T Consensus 85 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~~ 161 (284)
T PRK13210 85 DPATRERALEIMKKAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFMNS 161 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCccccCC
Confidence 1 133456677767779998876311 10000000113456677888899999999974 5553211 11233
Q ss_pred HHHHHHHHHHHHHcCCcEEecc-CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 233 RKFLYEILGEVIKVGATTLNIP-DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~la-DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
++.+.++++.+ +-+.+.++ |+. .+.=. -.+....++. .. +-...+|.+|..+.-.. ..|... +
T Consensus 162 ~~~~~~l~~~v---~~~~~~~~~D~~-h~~~~-~~~~~~~l~~-~~---~~i~~vHikD~~~~~~~------~~g~~~-~ 225 (284)
T PRK13210 162 ISKWKKWDKEI---DSPWLTVYPDVG-NLSAW-GNDVWSELKL-GI---DHIAAIHLKDTYAVTET------SKGQFR-D 225 (284)
T ss_pred HHHHHHHHHHc---CCCceeEEecCC-hhhhc-CCCHHHHHHH-hc---CeEEEEEeccccccccC------CCCccc-c
Confidence 45555555554 44555554 542 21100 0112233332 22 24578999987542000 011100 1
Q ss_pred ecccccccccCcccHHHHHHHHHhccc
Q 013498 312 VTINGIGERAGNASLEEVVMAFKCRGE 338 (442)
Q Consensus 312 ~Tv~GlGeraGNa~lEevv~~L~~~g~ 338 (442)
..+| .|+.+..+++..|+..|.
T Consensus 226 ---~p~G--~G~id~~~~~~~L~~~gy 247 (284)
T PRK13210 226 ---VPFG--EGCVDFVGIFKTLKELNY 247 (284)
T ss_pred ---ccCC--CcccCHHHHHHHHHHcCC
Confidence 1233 488999999999998763
No 113
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=95.78 E-value=0.82 Score=43.85 Aligned_cols=192 Identities=15% Similarity=0.125 Sum_probs=113.5
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc--
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-- 159 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-- 159 (442)
.+|-|+ .+-..|.++..++.+...+.|+..+-+ +|. .++...+.+.++ . ..+..+.+|=.
T Consensus 5 ~ID~t~------L~p~~t~~~i~~lc~~A~~~~~~avcv-~p~-------~v~~a~~~l~~~---~-v~v~tVigFP~G~ 66 (211)
T TIGR00126 5 LIDHTA------LKADTTEEDIITLCAQAKTYKFAAVCV-NPS-------YVPLAKELLKGT---E-VRICTVVGFPLGA 66 (211)
T ss_pred heeccC------CCCCCCHHHHHHHHHHHHhhCCcEEEe-CHH-------HHHHHHHHcCCC---C-CeEEEEeCCCCCC
Confidence 455555 345689999999999999999988888 442 233333333221 0 11122233321
Q ss_pred cc----hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHH
Q 013498 160 CN----ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKF 235 (442)
Q Consensus 160 ~~----~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~ 235 (442)
.. ..+++.|++ .|.+.|.+.+..+.+ ..-..+++.+.+.+.++.+. |.. +-+-.|... .+.+.
T Consensus 67 ~~~~~K~~E~~~Av~----~GAdEiDvv~n~g~l-----~~g~~~~v~~ei~~i~~~~~--g~~-lKvIlE~~~-L~~~e 133 (211)
T TIGR00126 67 STTDVKLYETKEAIK----YGADEVDMVINIGAL-----KDGNEEVVYDDIRAVVEACA--GVL-LKVIIETGL-LTDEE 133 (211)
T ss_pred CcHHHHHHHHHHHHH----cCCCEEEeecchHhh-----hCCcHHHHHHHHHHHHHHcC--CCe-EEEEEecCC-CCHHH
Confidence 11 123333433 499999888765532 12356677777777777664 653 445455433 56678
Q ss_pred HHHHHHHHHHcCCcEEeccCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 236 LYEILGEVIKVGATTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT--~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
+...++.+.++|+|.|--..- .+-++|+++..+-+.+...++ +...==.+ + ..-+++-+++||++|-+|
T Consensus 134 i~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~----IKaaGGir-t----~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 134 IRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIG----VKASGGVR-T----AEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCe----EEEeCCCC-C----HHHHHHHHHHhhHHhCcc
Confidence 889999999999998876522 245788887766555543221 22221112 2 355667777888877443
No 114
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.76 E-value=1.8 Score=43.46 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=117.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (442)
.++.+....+++.-.+.+-+.|=-.+|.... +. +..++.+++.. -+|+..-+--+ +.+++.+|++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~---------~vPV~lHLDH~~~~e~i~~Ai~ 95 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKM---------DVPVSLHLDHGKTFEDVKQAVR 95 (283)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECcCCCCHHHHHHHHH
Confidence 4678899999999999999988665654321 11 33555555542 13433222222 4566777766
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--Ec----cCCC------CCCCHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FS----PEDA------GRSDRKFLYE 238 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f~----~eda------sr~d~~~l~~ 238 (442)
+ |.+.|.+ . .| ..+.+|+++..++.+++|+..|.. |+ ++ .||. ..++|+...+
T Consensus 96 ~----GftSVM~-D-gS--------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~T~pe~a~~ 160 (283)
T PRK07998 96 A----GFTSVMI-D-GA--------ALPFEENIAFTKEAVDFAKSYGVP-VEAELGAILGKEDDHVSEADCKTEPEKVKD 160 (283)
T ss_pred c----CCCEEEE-e-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEeccCCCccccccccccccCCHHHHHH
Confidence 4 8888765 2 23 347789999999999999999984 53 32 2332 2578887755
Q ss_pred HHHHHHHcCCcEEeccC--cccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 239 ILGEVIKVGATTLNIPD--TVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laD--T~G~~~-P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
++ .+.|+|.+-++= .=|.-. |.-=.++++.+++.++ +||.+|+=. |...-....|+..|+.-|+.
T Consensus 161 Fv---~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~----vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 161 FV---ERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP----VPLVIHGGS--GIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred HH---HHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC----CCEEEeCCC--CCCHHHHHHHHHcCCcEEEE
Confidence 55 455888654432 223221 4433578888888763 788877654 66667778999999988754
No 115
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.72 E-value=0.86 Score=43.25 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChh-H-----------------HHHHHHHHHHhcccccccCCc-cceEeeecc
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKE-D-----------------FEAVRTIAKEVGNAVDAESGY-VPVICGLSR 159 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d-----------------~e~v~~l~~~~~~~~~~~~~l-~~~i~~~~r 159 (442)
+.++-.+|.+.|+..|.|+||+|.|.+.|- | ++.+-++.+...+ + +. .| |.-++-
T Consensus 30 ~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~---~--gvt~P-IiLmgY 103 (268)
T KOG4175|consen 30 DVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARP---Q--GVTCP-IILMGY 103 (268)
T ss_pred cHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcc---c--Ccccc-eeeeec
Confidence 457788999999999999999999865431 1 1111111221111 1 12 22 221222
Q ss_pred cc---hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 160 CN---ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 160 ~~---~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
.| .-+.++.++..+.+|+..+-+..- .+ +.+...=++||++|+..|-... .++++.-
T Consensus 104 YNPIl~yG~e~~iq~ak~aGanGfiivDl------------Pp----EEa~~~Rne~~k~gislvpLva----PsTtdeR 163 (268)
T KOG4175|consen 104 YNPILRYGVENYIQVAKNAGANGFIIVDL------------PP----EEAETLRNEARKHGISLVPLVA----PSTTDER 163 (268)
T ss_pred ccHHHhhhHHHHHHHHHhcCCCceEeccC------------Ch----HHHHHHHHHHHhcCceEEEeeC----CCChHHH
Confidence 22 233444555555667776544321 12 4455667889999975343322 2223333
Q ss_pred HHHHHHHHHcCCcEEeccCcccccC-----HHHHHHHHHHHHHhCCCCcceeEEE
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITM-----PTEFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~-----P~~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
.+++-.+.+ .-||+.-.+|..- -+.+.+|+.++|+...+. .+.++|
T Consensus 164 mell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dt-PlAVGF 214 (268)
T KOG4175|consen 164 MELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDT-PLAVGF 214 (268)
T ss_pred HHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCC-ceeEee
Confidence 344433332 4566666666533 344678889999887542 255554
No 116
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.71 E-value=2.4 Score=41.83 Aligned_cols=195 Identities=16% Similarity=0.207 Sum_probs=119.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+..+.-.++++.|.+.|++.|=+ | ++..+.+|+ +.++..++..+ +.+|.+++.+..+.++...-.+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~i~~a~ 86 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-------GRVPVIAGVGANSTREAIELAR 86 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-------CCCeEEEecCCccHHHHHHHHH
Confidence 588899999999999999999876 3 344555554 45566666543 2346777777655554333333
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC--CCCCHHHHHHHHHHHHHcCC
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--GRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda--sr~d~~~l~~~~~~~~~~Ga 248 (442)
..+.+|++.+.+..|.. +..+.+++++-..+.++. .++.-+-++.... ...+++.+.++++ ..
T Consensus 87 ~a~~~Gad~v~v~pP~y-------~~~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~tg~~l~~~~~~~L~~-----~~ 151 (281)
T cd00408 87 HAEEAGADGVLVVPPYY-------NKPSQEGIVAHFKAVADA---SDLPVILYNIPGRTGVDLSPETIARLAE-----HP 151 (281)
T ss_pred HHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEECccccCCCCCHHHHHHHhc-----CC
Confidence 44667999887765532 235667776666655553 3455345555443 3456776666553 46
Q ss_pred cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHH
Q 013498 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (442)
Q Consensus 249 d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEe 328 (442)
..+.+.||.| ....+.++++.. ++ + +.+-+=+| ...+.++..|++. ++.|+ +|.-.|.
T Consensus 152 ~v~giK~s~~--d~~~~~~~~~~~----~~--~--~~v~~G~d-----~~~~~~l~~G~~G---~i~~~----~n~~p~~ 209 (281)
T cd00408 152 NIVGIKDSSG--DLDRLTRLIALL----GP--D--FAVLSGDD-----DLLLPALALGADG---AISGA----ANVAPKL 209 (281)
T ss_pred CEEEEEeCCC--CHHHHHHHHHhc----CC--C--eEEEEcch-----HHHHHHHHcCCCE---EEehH----HhhCHHH
Confidence 8999999984 556666665543 21 1 33322222 4556778889854 34443 5777777
Q ss_pred HHHHHHh
Q 013498 329 VVMAFKC 335 (442)
Q Consensus 329 vv~~L~~ 335 (442)
++...+.
T Consensus 210 ~~~~~~~ 216 (281)
T cd00408 210 AVALYEA 216 (281)
T ss_pred HHHHHHH
Confidence 7766654
No 117
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=95.71 E-value=0.43 Score=48.37 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
..++.++..++++.+.+.|+..|.+ |-|-..++-.+.++.+.+..+. ..+...+ |-.-++..++.++
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~---------~~i~itT--NG~ll~~~~~~L~ 115 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGI---------RDLALTT--NGYLLARRAAALK 115 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCC---------ceEEEEc--CchhHHHHHHHHH
Confidence 4589999999999999999998887 4565555434556665443110 1121111 2112333445566
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
.+|+++|.+.+-..+.....+++ ....++++.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++.
T Consensus 116 ~agl~~i~ISlds~~~e~~~~i~--~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 116 DAGLDRVNVSLDSLDPERFKAIT--GRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HcCCCEEEEEeccCCHHHhccCC--CCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 77999988876544332222232 2245677888999999999732554431111234478889999999999863
No 118
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=95.69 E-value=0.69 Score=43.75 Aligned_cols=190 Identities=15% Similarity=0.153 Sum_probs=111.4
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCc-cceEeeeccc
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRC 160 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l-~~~i~~~~r~ 160 (442)
.+|-|+=. -..+.++..++++...+.|++.+-+ +|. .++...+.+.+. .. +....++-..
T Consensus 4 ~iDht~l~------p~~t~~~i~~~~~~a~~~~~~av~v-~p~-------~v~~~~~~l~~~-----~~~v~~~~~fp~g 64 (203)
T cd00959 4 LIDHTLLK------PDATEEDIRKLCDEAKEYGFAAVCV-NPC-------FVPLAREALKGS-----GVKVCTVIGFPLG 64 (203)
T ss_pred ceeeccCC------CCCCHHHHHHHHHHHHHcCCCEEEE-cHH-------HHHHHHHHcCCC-----CcEEEEEEecCCC
Confidence 45665532 2458999999999999999999988 332 222222222211 11 1111222111
Q ss_pred ------chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 161 ------NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 161 ------~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
....++.|++ .|.+.|.+.+....+ ..-..+++++++.+.++.+. |.. +.+-.|. ...+++
T Consensus 65 ~~~~~~k~~eve~A~~----~GAdevdvv~~~g~~-----~~~~~~~~~~ei~~v~~~~~--g~~-lkvI~e~-~~l~~~ 131 (203)
T cd00959 65 ATTTEVKVAEAREAIA----DGADEIDMVINIGAL-----KSGDYEAVYEEIAAVVEACG--GAP-LKVILET-GLLTDE 131 (203)
T ss_pred CCcHHHHHHHHHHHHH----cCCCEEEEeecHHHH-----hCCCHHHHHHHHHHHHHhcC--CCe-EEEEEec-CCCCHH
Confidence 1123444444 499999887765421 12345677888888888776 654 4443433 334578
Q ss_pred HHHHHHHHHHHcCCcEEecc--CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 235 FLYEILGEVIKVGATTLNIP--DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~la--DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.+...++.+.++|+|.|-.. =+.+..+|+.+..+-+.++..+| +.+.==.+ + ...++.-+++||+.|-+
T Consensus 132 ~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~----ik~aGGik-t----~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 132 EIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVG----VKAAGGIR-T----LEDALAMIEAGATRIGT 202 (203)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCce----EEEeCCCC-C----HHHHHHHHHhChhhccC
Confidence 99999999999999988876 22244677877766666652221 33321112 2 45567777778877643
No 119
>PRK01060 endonuclease IV; Provisional
Probab=95.67 E-value=2.3 Score=41.68 Aligned_cols=207 Identities=12% Similarity=0.087 Sum_probs=100.9
Q ss_pred HHHHHHHHhHcCCCEEEEcc--C------CCChhHHHHHHHHHHHhcccccccCCccceEeeecccch-------hhHHH
Q 013498 103 KLDIARQLAKLGVDIIEAGF--P------AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-------RDIKT 167 (442)
Q Consensus 103 kl~ia~~L~~~GV~~IEvG~--p------~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-------~dI~~ 167 (442)
-.+.++.+.++|++.+|+-. | ..++++.+.++.+.+..+-.+.......|...-++-.++ +.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~ 93 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQ 93 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHH
Confidence 34577888999999999931 2 123344555665554432211000000011011111111 22444
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH--HcCCCeEEEccCCCC------CCCHHHHHHH
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR--SLGCDDVEFSPEDAG------RSDRKFLYEI 239 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar--~~G~~~V~f~~edas------r~d~~~l~~~ 239 (442)
+++.....|.+.|.+...... .....++.++++.+.++.+. ..| |.+.+|... -.+++.+.++
T Consensus 94 ~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g---v~l~iEn~~~~~~~~~~~~~~~~~l 164 (281)
T PRK01060 94 EIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG---VTIVLENTAGQGSELGRRFEELARI 164 (281)
T ss_pred HHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC---CEEEEecCCCCCCcccCCHHHHHHH
Confidence 555556678887766433210 01123346677777766553 334 444444211 1356666666
Q ss_pred HHHHHHcCCcE-Eecc-Ccc-----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 240 LGEVIKVGATT-LNIP-DTV-----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 240 ~~~~~~~Gad~-I~la-DT~-----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
++.+ +-+. +.++ ||. |.-.+....++++.+.+..+. +-...+|.|+..+-. ..+.+ -+.
T Consensus 165 ~~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~--~~i~~vHl~D~~~~~--------~~~~d-~H~ 230 (281)
T PRK01060 165 IDGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGL--DRLKVMHLNDSKNEF--------GSRKD-RHA 230 (281)
T ss_pred HHhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhCh--hheeEEEEecCCCcc--------cCCCC-ccc
Confidence 6554 2222 4333 544 221123445677766654431 134678888876421 00111 011
Q ss_pred cccccccccCcccHHHHHHHHHhcc
Q 013498 313 TINGIGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 313 Tv~GlGeraGNa~lEevv~~L~~~g 337 (442)
.+ +.|+.+.++++..|+..+
T Consensus 231 ---~~--G~G~id~~~~~~~L~~~~ 250 (281)
T PRK01060 231 ---NL--GEGTIGFDALRYIVHDPR 250 (281)
T ss_pred ---CC--cCCcCCHHHHHHHHhCcc
Confidence 22 348899999999999865
No 120
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=95.65 E-value=2 Score=43.28 Aligned_cols=187 Identities=18% Similarity=0.148 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----hH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.++.+....+++.-.+.+.+.|=--++.... +. ...++.+++.... -+|+..=+=-+..+.++.+++
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~-------~vPV~lHLDH~~~~~i~~ai~ 97 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGI-------TVPVAIHLDHGHYEDALECIE 97 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCHHHHHHHHH
Confidence 4688999999999999999987554543211 11 2345555554210 134333222223344555544
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC----C-CCCHHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA----G-RSDRKFLYEI 239 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda----s-r~d~~~l~~~ 239 (442)
.|++.|.+= .| ..+.+|+++..++.+++|+..|.. |+. +.||. + .++++.+.++
T Consensus 98 ----~GftSVm~d--~S--------~l~~eEni~~t~~v~~~a~~~gv~-vE~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 98 ----VGYTSIMFD--GS--------HLPVEENLKLAKEVVEKAHAKGIS-VEAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred ----cCCCEEEEc--CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEecCcccCcCccccCccCCCCHHHHHHH
Confidence 488877542 22 346789999999999999999974 432 21331 2 3788877665
Q ss_pred HHHHHHcCCcEEecc--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 240 LGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 240 ~~~~~~~Gad~I~la--DT~G~~---~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
. +.|+|.+-++ -.=|.. +|.--.++++.+++.+++ +||.+|.- -|....|...+++.|++-|+..-
T Consensus 163 ~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~---iPlVlhGG--SGi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 163 V----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPG---FPIVLHGG--SGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred H----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccC---CCEEEECC--CCCCHHHHHHHHHcCCCEEEEcc
Confidence 5 5699987776 332332 343445678888887743 67877765 47888999999999999986643
No 121
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=95.64 E-value=0.55 Score=47.76 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~ 174 (442)
.+|.|+...+++...+.||+-|=+ |-|-.-++=.+.++.+++. + +. + + .++ +|---+..-.+.++.
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~-~--~~-~--i--slT----TNG~~L~~~a~~Lk~ 109 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARL-G--IR-D--L--SLT----TNGVLLARRAADLKE 109 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhc-c--cc-e--E--EEe----cchhhHHHHHHHHHH
Confidence 689999999999999999999877 4564433334566666553 1 11 0 0 111 122223334556788
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc--EEe
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--TLN 252 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad--~I~ 252 (442)
||.++|++++-+-|.....++. ....++++.+-|+.|.+.|+..|.++.--.-..+.+++.++++.+.+.|+. -|-
T Consensus 110 AGl~rVNVSLDsld~e~f~~IT--~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 110 AGLDRVNVSLDSLDPEKFRKIT--GRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred cCCcEEEeecccCCHHHHHHHh--CCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEE
Confidence 9999999987766665555543 223378888999999999996466554212226778999999999999974 466
Q ss_pred ccCcc
Q 013498 253 IPDTV 257 (442)
Q Consensus 253 laDT~ 257 (442)
+-|+-
T Consensus 188 ~m~~g 192 (322)
T COG2896 188 LMPLG 192 (322)
T ss_pred EeecC
Confidence 65655
No 122
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.59 E-value=1.1 Score=45.10 Aligned_cols=204 Identities=18% Similarity=0.207 Sum_probs=118.4
Q ss_pred HHHHhHcCCCEEEEc----------cCCCC----hhHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHH
Q 013498 107 ARQLAKLGVDIIEAG----------FPAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 168 (442)
Q Consensus 107 a~~L~~~GV~~IEvG----------~p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 168 (442)
++...++|++.|=++ +|-.. .+-.+.++.|.+... .|.++ |++ +...+.+.
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~r~ 98 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACD---------LPLLVDIDTGFG--GAFNIART 98 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHH
Confidence 466677799888553 23211 112345555555321 24443 444 66677777
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCC-CCCCHHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDA-GRSDRKFLYEILGEV 243 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-eda-sr~d~~~l~~~~~~~ 243 (442)
++.+..+|+..|+|-..+.+-++-+.-+ .+.++.+++++.+++..+ +.+ +.+.. .|+ .....+...+-++..
T Consensus 99 V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d-~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 99 VKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPD-FVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCC-eEEEEecCcccccCHHHHHHHHHHH
Confidence 7777788999999987765533322112 377888888776655443 333 22222 122 233467777778889
Q ss_pred HHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCc
Q 013498 244 IKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGN 323 (442)
Q Consensus 244 ~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGN 323 (442)
.++|||.|.+. |.-++++++++.+.+. .| +.+-+-.....++=.. -.--+.|++.|-.....+ |+-.
T Consensus 176 ~eAGAD~ifi~---~~~~~~~i~~~~~~~~--~P----l~~n~~~~~~~p~~s~--~~L~~lGv~~v~~~~~~~--~aa~ 242 (292)
T PRK11320 176 VEAGADMIFPE---AMTELEMYRRFADAVK--VP----ILANITEFGATPLFTT--EELASAGVAMVLYPLSAF--RAMN 242 (292)
T ss_pred HHcCCCEEEec---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCCCCH--HHHHHcCCcEEEEChHHH--HHHH
Confidence 99999999995 5667888888777652 22 2222322222111122 233456999986544432 5566
Q ss_pred ccHHHHHHHHHhcc
Q 013498 324 ASLEEVVMAFKCRG 337 (442)
Q Consensus 324 a~lEevv~~L~~~g 337 (442)
.++++++..+...|
T Consensus 243 ~a~~~~~~~l~~~g 256 (292)
T PRK11320 243 KAAENVYEAIRRDG 256 (292)
T ss_pred HHHHHHHHHHHHcC
Confidence 67777777776554
No 123
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.58 E-value=2.4 Score=41.96 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-cc----CCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-GF----PAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G~----p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.+..+.-.++++.|.+.|++-+=+ |+ +..+.+|+. .++..++... +.++.+.+.+..+.++ ++.+
T Consensus 17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~~~~~~~~~a- 88 (284)
T cd00950 17 SVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-------GRVPVIAGTGSNNTAEAIELT- 88 (284)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-------CCCcEEeccCCccHHHHHHHH-
Confidence 488899999999999999998866 32 444556644 5555555532 2245667666544444 4444
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~G 247 (442)
+..+.+|++.|.+.-|.. +..+.+++++-..+.++. .++.-+-++... ....+++.+.+++ +.
T Consensus 89 ~~a~~~G~d~v~~~~P~~-------~~~~~~~l~~~~~~ia~~---~~~pi~lYn~P~~~g~~ls~~~~~~L~----~~- 153 (284)
T cd00950 89 KRAEKAGADAALVVTPYY-------NKPSQEGLYAHFKAIAEA---TDLPVILYNVPGRTGVNIEPETVLRLA----EH- 153 (284)
T ss_pred HHHHHcCCCEEEEccccc-------CCCCHHHHHHHHHHHHhc---CCCCEEEEEChhHhCCCCCHHHHHHHh----cC-
Confidence 344668999887765532 345677777666665553 355545555543 3345667666555 33
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
...+.+.||.| .+..+.++++. .++ .+.+-.=+| + ..+.++..|++.. +.| .+|.-.+
T Consensus 154 p~v~giK~s~~--~~~~~~~~~~~----~~~----~~~v~~G~d-~----~~~~~~~~G~~G~---~s~----~~n~~p~ 211 (284)
T cd00950 154 PNIVGIKEATG--DLDRVSELIAL----CPD----DFAVLSGDD-A----LTLPFLALGGVGV---ISV----AANVAPK 211 (284)
T ss_pred CCEEEEEECCC--CHHHHHHHHHh----CCC----CeEEEeCCh-H----hHHHHHHCCCCEE---Eeh----HHHhhHH
Confidence 57899999987 34455554433 332 133332223 1 2334577887733 333 3455556
Q ss_pred HHHHHHHh
Q 013498 328 EVVMAFKC 335 (442)
Q Consensus 328 evv~~L~~ 335 (442)
.+....+.
T Consensus 212 ~~~~~~~~ 219 (284)
T cd00950 212 LMAEMVRA 219 (284)
T ss_pred HHHHHHHH
Confidence 65555443
No 124
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.56 E-value=0.68 Score=44.77 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.++-+++++.|.+.|++.||+.+ .+|.-.+.++.+.+......++ ..+-+=+-.+.++++.++++ |.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~--~tp~a~~~i~~l~~~~~~~~p~-----~~vGaGTVl~~e~a~~a~~a----GA 92 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTN--RGDFAHEVFAELVKYAAKELPG-----MILGVGSIVDAATAALYIQL----GA 92 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeC--CCCcHHHHHHHHHHHHHhhCCC-----eEEeeEeCcCHHHHHHHHHc----CC
Confidence 5789999999999999999999987 3455566777776443221110 11222223578888888775 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec--cC
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l--aD 255 (442)
+.+.. |..+ .+.+++++++|+. +. .+-.+|.++ ..+.++|++.|-| ++
T Consensus 93 ~FiVs--P~~~------------------~~v~~~~~~~~i~-~i-----PG~~TpsEi----~~A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 93 NFIVT--PLFN------------------PDIAKVCNRRKVP-YS-----PGCGSLSEI----GYAEELGCEIVKLFPGS 142 (222)
T ss_pred CEEEC--CCCC------------------HHHHHHHHHcCCC-Ee-----CCCCCHHHH----HHHHHCCCCEEEECccc
Confidence 66432 2221 2578899999985 22 123444444 3556899998766 35
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH--HHHHHHHHhCCCEE
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST--ANTIAGACAGARQV 310 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~--ANalaAl~aGa~~v 310 (442)
+.| | .+++.|+.-+|+++ +- -.-|... .|.-.-+.+|+..+
T Consensus 143 ~~G---~----~~ikal~~p~p~i~---~~----ptGGV~~~~~n~~~yl~aGa~av 185 (222)
T PRK07114 143 VYG---P----GFVKAIKGPMPWTK---IM----PTGGVEPTEENLKKWFGAGVTCV 185 (222)
T ss_pred ccC---H----HHHHHHhccCCCCe---EE----eCCCCCcchhcHHHHHhCCCEEE
Confidence 444 3 45677777777533 22 2335554 57778888887665
No 125
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.50 E-value=1.9 Score=42.73 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=53.9
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l~~ 238 (442)
...+++..+.+.+...|++.|.+.+++...-....+..+ .+.+.+.++.+|+. ++. |.+-+ ..-.+.+.+.+
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~----~~~~~eiv~~vr~~~~~p-v~vKl--~~~~~~~~~~~ 180 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQD----PEAVANLLKAVKAAVDIP-LLVKL--SPYFDLEDIVE 180 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccC----HHHHHHHHHHHHHccCCC-EEEEe--CCCCCHHHHHH
Confidence 356777777777777789988776554321111111112 23334445555543 443 43332 12245678889
Q ss_pred HHHHHHHcCCcEEeccCcc
Q 013498 239 ILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~ 257 (442)
+++.+.++|+|.|.+..|.
T Consensus 181 ~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 181 LAKAAERAGADGLTAINTI 199 (289)
T ss_pred HHHHHHHcCCCEEEEEccc
Confidence 9999999999999987664
No 126
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.50 E-value=1.8 Score=42.94 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc--CCCChhH--------HHHHHHHHHHhcccccccCCccceEeeecccchhhHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKED--------FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d--------~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (442)
=+.++-+++|+.|.++|+..+=.|+ |..+|.. ...++++.+.. ++ +.++ .-....+++.
T Consensus 38 e~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--------Gl-~~~t--e~~d~~~~~~ 106 (266)
T PRK13398 38 ESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKY--------NL-PVVT--EVMDTRDVEE 106 (266)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHc--------CC-CEEE--eeCChhhHHH
Confidence 4889999999999999999998885 4444422 23344443332 22 2222 1234555655
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
..+. ++.+.| +.-+. +- .++++.+.+.|.. |.+.- ..-.+++.+...++.+...|
T Consensus 107 l~~~-----vd~~kI--ga~~~--------~n-------~~LL~~~a~~gkP-V~lk~--G~~~s~~e~~~A~e~i~~~G 161 (266)
T PRK13398 107 VADY-----ADMLQI--GSRNM--------QN-------FELLKEVGKTKKP-ILLKR--GMSATLEEWLYAAEYIMSEG 161 (266)
T ss_pred HHHh-----CCEEEE--Ccccc--------cC-------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHHHhcC
Confidence 5442 455544 32221 10 1345556667875 77743 23347788888888898899
Q ss_pred CcEEeccCcc---cccC-HHHH-HHHHHHHHHhCCCCcceeEEE-eecCC--cchHHHHHHHHHHhCCC--EEEeccccc
Q 013498 248 ATTLNIPDTV---GITM-PTEF-GKLIADIKANTPGIENVVIST-HCQND--LGLSTANTIAGACAGAR--QVEVTINGI 317 (442)
Q Consensus 248 ad~I~laDT~---G~~~-P~~v-~~li~~l~~~~p~~~~v~i~~-H~HND--lGLA~ANalaAl~aGa~--~vd~Tv~Gl 317 (442)
-..+.|+..- .... +..+ -..+..+++.++ ++|.+ =.|-. .-+...-+++|+.+||+ .|+.-+..
T Consensus 162 n~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~----~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~p- 236 (266)
T PRK13398 162 NENVVLCERGIRTFETYTRNTLDLAAVAVIKELSH----LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEP- 236 (266)
T ss_pred CCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccC----CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCc-
Confidence 8877777741 1123 3333 234456666553 56777 34432 23557779999999999 67655442
Q ss_pred ccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHH
Q 013498 318 GERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEY 363 (442)
Q Consensus 318 GeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~ 363 (442)
.++ + . .-...++++.|.++.+.+.++
T Consensus 237 -d~a-----------~----~----D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 237 -EKA-----------L----S----DARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred -ccc-----------C----C----chhhcCCHHHHHHHHHHHHHH
Confidence 111 1 0 113457777777776665543
No 127
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=95.43 E-value=0.38 Score=47.33 Aligned_cols=213 Identities=16% Similarity=0.151 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc--C------CCChhHHHHHHHHHHHh-cccccccCCccceEeeecccc-------
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF--P------AASKEDFEAVRTIAKEV-GNAVDAESGYVPVICGLSRCN------- 161 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~--p------~~~~~d~e~v~~l~~~~-~~~~~~~~~l~~~i~~~~r~~------- 161 (442)
++.+++++++ .++|++.||+.. + ..++++.+.++.+.+.. +..+. ...+....+....
T Consensus 10 ~~l~~~l~~a---~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~r~~~ 83 (279)
T cd00019 10 FGLENALKRA---KEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLS---VHAPYLINLASPDKEKREKS 83 (279)
T ss_pred ccHHHHHHHH---HHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEE---EEcCceeccCCCCHHHHHHH
Confidence 6766666554 566999998832 2 12345566666655543 11100 0001111111111
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC----CCCHHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG----RSDRKFLY 237 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas----r~d~~~l~ 237 (442)
.+.++++++..+..|.+.+.+......-. ......+..++.+.+++++|++.|+. +.+-..... -.+++.+.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~~~~---~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~~~~t~~~~~ 159 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSYLGQ---SKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGNEIGSSFEELK 159 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCC---CHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCCCCCCCHHHHH
Confidence 12345566666777888877654432100 00112345667778888888888873 555322111 23556666
Q ss_pred HHHHHHHHcCCcEEec-cCcc-----ccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 238 EILGEVIKVGATTLNI-PDTV-----GIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~l-aDT~-----G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
++++.+- +-+.+.+ -|+. |.- +|++..+.+..+.+.++. +-...+|.||..+.-. + +.
T Consensus 160 ~li~~v~--~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~--~~i~~vHikD~~~~~~---------~-~~ 225 (279)
T cd00019 160 EIIDLIK--EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGL--EYLKAIHLNDSKGELG---------S-GK 225 (279)
T ss_pred HHHHhcC--CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhCh--hheeEEEEEcCCCccc---------C-CC
Confidence 6666653 0232322 2433 222 356677777777766542 2357899999764310 0 00
Q ss_pred EEecccccccccCcccHHHHHHHHHhccc
Q 013498 310 VEVTINGIGERAGNASLEEVVMAFKCRGE 338 (442)
Q Consensus 310 vd~Tv~GlGeraGNa~lEevv~~L~~~g~ 338 (442)
- .-..+ +.|..+.++++..|+..+.
T Consensus 226 ~--~~~~~--G~G~id~~~~l~~L~~~~y 250 (279)
T cd00019 226 D--RHEPI--GEGDIDGEELFKELKKDPY 250 (279)
T ss_pred c--cccCC--CCCCcCCHHHHHHHHhCcc
Confidence 0 01222 3478889999999998753
No 128
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=95.38 E-value=3.1 Score=40.99 Aligned_cols=196 Identities=21% Similarity=0.283 Sum_probs=103.9
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEcc----CCC---C-hhHHHHHHHHHHHhcccccccCCccce
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF----PAA---S-KEDFEAVRTIAKEVGNAVDAESGYVPV 153 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~----p~~---~-~~d~e~v~~l~~~~~~~~~~~~~l~~~ 153 (442)
|+-+|. |-..-.|..++.++.++.+..+.+.|.++|++|. |.. + +++++.+..+.+.+.... -.|
T Consensus 6 IlN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-----~~p- 78 (257)
T cd00739 6 ILNVTP-DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-----DVL- 78 (257)
T ss_pred EEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-----CCc-
Confidence 444444 4444445668999999999999999999999995 332 2 234555443333322110 012
Q ss_pred EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC-CC-
Q 013498 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RS- 231 (442)
Q Consensus 154 i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas-r~- 231 (442)
+ ..=-.+.+-++.|++. |++.|. ++|- ... + .++++.+++.|+. +.....+.. ++
T Consensus 79 l-SIDT~~~~v~e~al~~----G~~iIN---disg--------~~~----~--~~~~~l~~~~~~~-vV~m~~~g~p~~~ 135 (257)
T cd00739 79 I-SVDTFRAEVARAALEA----GADIIN---DVSG--------GSD----D--PAMLEVAAEYGAP-LVLMHMRGTPKTM 135 (257)
T ss_pred E-EEeCCCHHHHHHHHHh----CCCEEE---eCCC--------CCC----C--hHHHHHHHHcCCC-EEEECCCCCCccc
Confidence 2 2222356666777664 777665 3331 010 0 2445667778876 433222211 00
Q ss_pred ------------CHHHHHHHHHHHHHcCCc--EEeccCc-cccc-CHHHHHHHHHHHHHh--CCCCcceeEEE-------
Q 013498 232 ------------DRKFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIADIKAN--TPGIENVVIST------- 286 (442)
Q Consensus 232 ------------d~~~l~~~~~~~~~~Gad--~I~laDT-~G~~-~P~~v~~li~~l~~~--~p~~~~v~i~~------- 286 (442)
-.+++.+.++.+.++|++ .|.+ |- +|.. ++++-.++++.++.. . +. .+-+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~-~~-pil~G~SrkSfig 212 (257)
T cd00739 136 QENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQL-GL-PVLVGASRKSFIG 212 (257)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhC-CC-cEEEEecccHHHH
Confidence 124677777888889985 5554 44 2332 244445555544321 2 11 133443
Q ss_pred -----eecCCcchHHHHHHHHHHhCCCEE
Q 013498 287 -----HCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 287 -----H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
-..+..+--++-+..|++.||++|
T Consensus 213 ~~~~~~~~~r~~~t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 213 ALLGREPKDRDWGTLALSALAAANGADIV 241 (257)
T ss_pred HhcCCCccccchhHHHHHHHHHHcCCCEE
Confidence 223444555555566667777765
No 129
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=95.31 E-value=1.3 Score=43.52 Aligned_cols=202 Identities=14% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCC---------ChhHHHHHHHHHHHhcccccccCCccceEe-------eecccc
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAA---------SKEDFEAVRTIAKEVGNAVDAESGYVPVIC-------GLSRCN 161 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~---------~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~-------~~~r~~ 161 (442)
.+.++.+ +.+.++|++.||++.+.. ++++.+.++...+..+-.+ ..++ .++..+
T Consensus 16 ~~~~e~l---~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i-------~~~~~~~~~~~~l~~~~ 85 (279)
T TIGR00542 16 ECWLERL---QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRI-------PSMCLSAHRRFPLGSKD 85 (279)
T ss_pred CCHHHHH---HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCc-------eeeecCCCccCcCCCcC
Confidence 5555555 555688999999964321 2334444554444322211 1111 011111
Q ss_pred h-------hhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCH
Q 013498 162 E-------RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDR 233 (442)
Q Consensus 162 ~-------~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~ 233 (442)
. +.++.+++..+..|.+.|.+.. .+...........+..++.+.+++++|++.|+. +.+-... ..-.++
T Consensus 86 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~t~ 162 (279)
T TIGR00542 86 KAVRQQGLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMSSI 162 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEecC--cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhcCH
Confidence 1 1345566666777888876542 110000000112455667778899999999973 5553211 112233
Q ss_pred HHHHHHHHHHHHcCCcEEec-cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 234 KFLYEILGEVIKVGATTLNI-PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~l-aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.+.++ +.+.+-+.+.+ .|+.-...-. .+....++..-+ -...+|.+|..+ |. .+.
T Consensus 163 ~~~~~l---i~~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~~~~----~i~~vHikD~~~------------~~--~~~ 219 (279)
T TIGR00542 163 SKWLKW---DHYLNSPWFTLYPDIGNLSAWD--NDVQMELQLGID----KIVAIHLKDTKP------------GQ--FKD 219 (279)
T ss_pred HHHHHH---HHHcCCCceEEEeCcChhhhcc--CCHHHHHHHhhh----hEEEEEeCCCCC------------Cc--cCC
Confidence 433344 34445444444 3664221000 011222332112 357899998643 11 111
Q ss_pred cccccccccCcccHHHHHHHHHhcccc
Q 013498 313 TINGIGERAGNASLEEVVMAFKCRGEH 339 (442)
Q Consensus 313 Tv~GlGeraGNa~lEevv~~L~~~g~~ 339 (442)
..+ +.|..+...++..|+..|.+
T Consensus 220 --~p~--G~G~id~~~~~~aL~~~gy~ 242 (279)
T TIGR00542 220 --VPF--GEGCVDFERCFKTLKQLNYR 242 (279)
T ss_pred --cCC--CCCccCHHHHHHHHHHhCCc
Confidence 123 34789999999999987643
No 130
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=95.30 E-value=3.1 Score=41.76 Aligned_cols=185 Identities=18% Similarity=0.155 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChh--H----HHHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE--D----FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~--d----~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~ 169 (442)
.++.+....+.+.-.+.+.+.|=-.+|..... . ...++.+++.... -+|...-+=-+ +.+++.+++
T Consensus 25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI-------TVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCC-------CCcEEEECCCCCCHHHHHHHH
Confidence 47889999999999999999875545532221 1 2345555543210 13433222222 345566665
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC------CCCCHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLY 237 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda------sr~d~~~l~ 237 (442)
++ |...|.+ . .| ..+.+|+++..++.+++|+..|.. |+- +.||. ..+||+...
T Consensus 98 ~~----GftSVM~-D-gS--------~lp~eeNi~~Trevv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~yT~peeA~ 162 (285)
T PRK07709 98 DA----GFTSVMI-D-AS--------HHPFEENVETTKKVVEYAHARNVS-VEAELGTVGGQEDDVIAEGVIYADPAECK 162 (285)
T ss_pred Hc----CCCEEEE-e-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCcccccccCCCHHHHH
Confidence 54 8887654 2 23 346789999999999999999984 532 22332 157888776
Q ss_pred HHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 238 EILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
++++. -|+|.+-++ -.=|.- .|.-=.++++.+++.++ +||.+|+ .-|+....-..|+..|+.-|+.
T Consensus 163 ~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~----iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 163 HLVEA---TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG----VPLVLHG--GTGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred HHHHH---hCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEEe
Confidence 66654 488865542 222332 35545677888888773 7788766 4677777888999999888754
No 131
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=95.30 E-value=0.43 Score=48.41 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=99.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCc-cceEeeecccchhhHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVICGLSRCNERDIKTAWEAV 172 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l-~~~i~~~~r~~~~dI~~a~e~l 172 (442)
..++.++..++++.+.+.|++.|-+ |-|-..++-.+.++.+.+.. ++ ...+.. |---++..++.+
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~--------gi~~v~itT----NG~ll~~~~~~L 108 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALP--------GIEDIALTT----NGLLLARHAKDL 108 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcC--------CCCeEEEEe----CchhHHHHHHHH
Confidence 3589999999999999999998877 45655554445666655421 11 112221 221223345566
Q ss_pred HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc--E
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--T 250 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad--~ 250 (442)
+.+|+++|.+.+-..+.....++.. ....++.+.+.++.+++.|+..|.++..-....+.+.+.++++.+.+.|++ -
T Consensus 109 ~~~gl~~v~ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ 187 (334)
T TIGR02666 109 KEAGLKRVNVSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRF 187 (334)
T ss_pred HHcCCCeEEEecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEE
Confidence 7789999988765543222223321 112356667788888999984254443211224567889999999999986 2
Q ss_pred EeccCcccccC--H---HHHHHHHHHHHHhCC
Q 013498 251 LNIPDTVGITM--P---TEFGKLIADIKANTP 277 (442)
Q Consensus 251 I~laDT~G~~~--P---~~v~~li~~l~~~~p 277 (442)
+.+....+... . ....++++.+.+.++
T Consensus 188 ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~ 219 (334)
T TIGR02666 188 IELMPLGEGNGWREKKFVSADEILERLEQAFG 219 (334)
T ss_pred EeccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence 33444333211 1 124556666766653
No 132
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.28 E-value=3.3 Score=40.67 Aligned_cols=132 Identities=26% Similarity=0.367 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCC--------ChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--------SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~--------~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
+...+.+..++.++.+.+.|.++|++|.-+. ..++++.+..+.+.+.... . .| + ..--.+.+-++
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~----~-~p-i-SIDT~~~~v~~ 90 (258)
T cd00423 18 GKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP----D-VP-I-SVDTFNAEVAE 90 (258)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC----C-Ce-E-EEeCCcHHHHH
Confidence 4457899999999999999999999996333 2345665555555442110 1 12 2 22334566667
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CC--------CC-----
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GR--------SD----- 232 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr--------~d----- 232 (442)
.+++. |.+.|+ ++|-. +.+ .++++.+++.|+. +.....+. +. .+
T Consensus 91 aaL~~----g~~iIN---dis~~------~~~--------~~~~~l~~~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 148 (258)
T cd00423 91 AALKA----GADIIN---DVSGG------RGD--------PEMAPLAAEYGAP-VVLMHMDGTPQTMQNNPYYADVVDEV 148 (258)
T ss_pred HHHHh----CCCEEE---eCCCC------CCC--------hHHHHHHHHcCCC-EEEECcCCCCcccccCCCcchHHHHH
Confidence 77765 666554 33310 001 2456677888886 44433221 11 11
Q ss_pred HHHHHHHHHHHHHcCC--cEEeccCc
Q 013498 233 RKFLYEILGEVIKVGA--TTLNIPDT 256 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Ga--d~I~laDT 256 (442)
.+++.+.++.+.++|+ +.|.+ |.
T Consensus 149 ~~~~~~~i~~~~~~Gi~~~~Iil-DP 173 (258)
T cd00423 149 VEFLEERVEAATEAGIPPEDIIL-DP 173 (258)
T ss_pred HHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence 4788888888999995 34554 54
No 133
>PRK06267 hypothetical protein; Provisional
Probab=95.27 E-value=2 Score=44.21 Aligned_cols=208 Identities=12% Similarity=0.111 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
..+.++.++-++.+.+.|++.+=+ |++ ....+.+ .++.+.+. .. . ......+..+.++... + .
T Consensus 62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~-~~~~el~~i~e~I~~~-~~-------~-~~~~s~G~~d~~~~~~--~--~ 127 (350)
T PRK06267 62 RRRVESILAEAILMKRIGWKLEFISGGYG-YTTEEINDIAEMIAYI-QG-------C-KQYLNVGIIDFLNINL--N--E 127 (350)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCHHHHHHHHHHHHHh-hC-------C-ceEeecccCCHHHHhh--c--c
Confidence 468999999999999999984322 555 3343433 33333222 11 1 1111122223322211 1 1
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe-
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN- 252 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~- 252 (442)
..|+ ....-+.+-....+++.+ ..++...+.++.+++.|+. +..+..-+..-+.+.+.++++.+.+.+++.+.
T Consensus 128 l~Gv---~g~~ET~~~~~~~~i~~~--~s~ed~~~~l~~ak~aGi~-v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~ 201 (350)
T PRK06267 128 IEGV---VGAVETVNPKLHREICPG--KPLDKIKEMLLKAKDLGLK-TGITIILGLGETEDDIEKLLNLIEELDLDRITF 201 (350)
T ss_pred ccCc---eeeeecCCHHHHHhhCCC--CCHHHHHHHHHHHHHcCCe-eeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 1232 223333322222333322 1244555788899999995 54333221122367788999999999988654
Q ss_pred -----ccCc----ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE--Eeccccccccc
Q 013498 253 -----IPDT----VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV--EVTINGIGERA 321 (442)
Q Consensus 253 -----laDT----~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v--d~Tv~GlGera 321 (442)
.++| .-...|+++-+++...|-.+|+.. +..+. =-+.+..++ .++.+||+.| =--+++++...
T Consensus 202 ~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~-I~~~~--~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt~~ 275 (350)
T PRK06267 202 YSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIK-IITGT--WVDKLTNIG---PLIMSGSNVITKFPLFSMYGTKE 275 (350)
T ss_pred EeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCC-cchhh--HhHhcchhh---HHhhcCcceeeccchhccCcccC
Confidence 3454 234678999999999999898643 32221 101111111 2566899888 33456667777
Q ss_pred CcccHHHHH
Q 013498 322 GNASLEEVV 330 (442)
Q Consensus 322 GNa~lEevv 330 (442)
|...-+++-
T Consensus 276 g~~~~~~~~ 284 (350)
T PRK06267 276 GKRVENEIR 284 (350)
T ss_pred CCCHHHHHH
Confidence 887766653
No 134
>PRK12928 lipoyl synthase; Provisional
Probab=95.20 E-value=0.49 Score=47.52 Aligned_cols=164 Identities=16% Similarity=0.090 Sum_probs=96.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCC--Ch----hH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAA--SK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~--~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (442)
...++.++.++.++.+.+.|+++|-+..... .+ +. .+.++.|.+..+. ..+..+..-....+..
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~---------~~I~~ltp~~~~~~~e 154 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPG---------TGIEVLTPDFWGGQRE 154 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCC---------CEEEEeccccccCCHH
Confidence 3568999999999999999999877743211 01 11 2455555443211 1233332211110233
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CCeEEEccCCCCCCCHHHHHHHHHHHHH
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG--CDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G--~~~V~f~~edasr~d~~~l~~~~~~~~~ 245 (442)
.++.++.+|.+.+...+.+++ .+..+++.. ...++..+.++.+++.| +. +.-+++-+.--+.+.+.+.++.+.+
T Consensus 155 ~L~~l~~Ag~~i~~hnlEt~~-~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~-~~s~iIvG~GET~ed~~etl~~Lre 230 (290)
T PRK12928 155 RLATVLAAKPDVFNHNLETVP-RLQKAVRRG--ADYQRSLDLLARAKELAPDIP-TKSGLMLGLGETEDEVIETLRDLRA 230 (290)
T ss_pred HHHHHHHcCchhhcccCcCcH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCce-ecccEEEeCCCCHHHHHHHHHHHHh
Confidence 455566678776665566665 444555432 23455567888999998 53 2222221222345778899999999
Q ss_pred cCCcEEeccC----------cccccCHHHHHHHHHH
Q 013498 246 VGATTLNIPD----------TVGITMPTEFGKLIAD 271 (442)
Q Consensus 246 ~Gad~I~laD----------T~G~~~P~~v~~li~~ 271 (442)
.+++.+.+.= -....+|+++.++=..
T Consensus 231 l~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~ 266 (290)
T PRK12928 231 VGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQI 266 (290)
T ss_pred cCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHH
Confidence 9999887721 2366788887765443
No 135
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.18 E-value=2.2 Score=43.96 Aligned_cols=201 Identities=18% Similarity=0.173 Sum_probs=124.6
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEe--eecc
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSR 159 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r 159 (442)
++.+..+ ..++.++...+++.-.+.+.+.|=--+|.... +. ...++.+++... -+|... .++.
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~--------~VPValHLDHg~ 86 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP--------HIPVVMHQDHGN 86 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCCC
Confidence 4445444 34788999999999999999977444443221 11 123333433210 134322 2231
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--Ec----cC-------
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FS----PE------- 226 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f~----~e------- 226 (442)
..+++.+++++ |...|.+= .|... ..+...+.+|+++..++.+++|+..|+. |+ ++ .|
T Consensus 87 -~~e~i~~ai~~----GftSVMiD--gS~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~-VEaELG~vgg~e~~~~g~~ 157 (347)
T PRK09196 87 -SPATCQRAIQL----GFTSVMMD--GSLKA-DGKTPASYEYNVDVTRKVVEMAHACGVS-VEGELGCLGSLETGMGGEE 157 (347)
T ss_pred -CHHHHHHHHHc----CCCEEEec--CCCCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCccccccccc
Confidence 45566666664 88876542 23110 1223447899999999999999999984 53 21 12
Q ss_pred C-----------CCCCCHHHHHHHHHHHHHcCCcEEecc--Cccccc----CHH---HHHHHHHHHHHhCCCCcceeEEE
Q 013498 227 D-----------AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 227 d-----------asr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~----~P~---~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
| ...++|+...+++ .+-|+|.+-++ -.=|.. .|. -=.++++.|++.+++ +||.+
T Consensus 158 ~~~~~~~~~~~~~~~T~PeeA~~Fv---~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~---vPLVL 231 (347)
T PRK09196 158 DGHGAEGKLSHDQLLTDPEEAADFV---KKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPN---THLVM 231 (347)
T ss_pred cCcccccccchhhcCCCHHHHHHHH---HHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCC---CCEEE
Confidence 1 1257787665555 45688865544 233444 242 234577888888853 78999
Q ss_pred eecCCc-------------------chHHHHHHHHHHhCCCEEEe
Q 013498 287 HCQNDL-------------------GLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 287 H~HNDl-------------------GLA~ANalaAl~aGa~~vd~ 312 (442)
|.=... |....+-..|+..|+.-|+.
T Consensus 232 HGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi 276 (347)
T PRK09196 232 HGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNI 276 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEe
Confidence 987766 77888999999999999864
No 136
>PRK08185 hypothetical protein; Provisional
Probab=95.05 E-value=4.3 Score=40.73 Aligned_cols=191 Identities=17% Similarity=0.190 Sum_probs=119.8
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCC---hhH-HHHHHHHHHHhcccccccCCccceEeeeccc-c
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-N 161 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~ 161 (442)
++.+..+ ..++.++...+.+.-.+.+.+.|=-.+|... +.+ ...++.+++.. -+|+..-+=-+ .
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPV~lHLDHg~~ 80 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRS---------PVPFVIHLDHGAT 80 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHC---------CCCEEEECCCCCC
Confidence 3444443 2478899999999999999998755454332 222 33445554432 24533322222 4
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--Ec---c-CCC-------
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FS---P-EDA------- 228 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f~---~-eda------- 228 (442)
.++++.+++. |++.|.+ -.| ..+.+|+++..++.+++|+..|.. |+ ++ . ++.
T Consensus 81 ~e~i~~ai~~----Gf~SVM~--D~S--------~l~~eeNi~~t~~vv~~a~~~gv~-vE~ElG~vg~~e~~~~~~~~~ 145 (283)
T PRK08185 81 IEDVMRAIRC----GFTSVMI--DGS--------LLPYEENVALTKEVVELAHKVGVS-VEGELGTIGNTGTSIEGGVSE 145 (283)
T ss_pred HHHHHHHHHc----CCCEEEE--eCC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeccCccccccccccc
Confidence 5667777664 8877543 233 247899999999999999999984 42 11 1 111
Q ss_pred -CCCCHHHHHHHHHHHHHcCCcEEecc-Cccccc-----CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 229 -GRSDRKFLYEILGEVIKVGATTLNIP-DTVGIT-----MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 229 -sr~d~~~l~~~~~~~~~~Gad~I~la-DT~G~~-----~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
..++|+...++++ +-|+|.+-++ -|++.. .|.--.++++.+++.++ +||..|.--+.. ...-..
T Consensus 146 ~~~t~peea~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~----iPLVlHGgsg~~--~e~~~~ 216 (283)
T PRK08185 146 IIYTDPEQAEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD----IPLVLHGGSANP--DAEIAE 216 (283)
T ss_pred ccCCCHHHHHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC----CCEEEECCCCCC--HHHHHH
Confidence 1457776654443 3488876662 233222 34444778888888763 788888766554 667788
Q ss_pred HHHhCCCEEEe
Q 013498 302 GACAGARQVEV 312 (442)
Q Consensus 302 Al~aGa~~vd~ 312 (442)
|+..|+.-|+.
T Consensus 217 ai~~GI~KiNi 227 (283)
T PRK08185 217 SVQLGVGKINI 227 (283)
T ss_pred HHHCCCeEEEe
Confidence 99999988854
No 137
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.01 E-value=4.4 Score=40.62 Aligned_cols=195 Identities=10% Similarity=0.093 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEc-----cCCCChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhh-HHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG-----~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~e 170 (442)
+..+.-.++++.+.+.||+-|=++ ++..+.+|. +.++...+... +.+|.+++.+..+.++ |+.+-.
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-------g~~pvi~gv~~~~t~~ai~~a~~ 90 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-------GRIPFAPGTGALNHDETLELTKF 90 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------CCCcEEEECCcchHHHHHHHHHH
Confidence 788888999999999999988663 355555554 45555555432 3357777776555444 444433
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcCC
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~Ga 248 (442)
....|++.+.+..|.. +.-+.++.++-....++..- ++.-+-++.+. ....+++.+.++++. -.
T Consensus 91 -A~~~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~~----~p 156 (294)
T TIGR02313 91 -AEEAGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIIIYNIPGRAAQEIAPKTMARLRKD----CP 156 (294)
T ss_pred -HHHcCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEEEeCchhcCcCCCHHHHHHHHhh----CC
Confidence 3567999887765542 34466676666666555421 34435556543 334566766655532 25
Q ss_pred cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHH
Q 013498 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (442)
Q Consensus 249 d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEe 328 (442)
..+.+.||.|-+ ..+.++++. .++ +..| +.+++ ...+.++.+|++.. +.| .+|.-.|.
T Consensus 157 nv~giK~ss~d~--~~~~~~~~~----~~~--~~~v-~~G~d------~~~~~~l~~Ga~G~---is~----~~n~~P~~ 214 (294)
T TIGR02313 157 NIVGAKESNKDF--EHLNHLFLE----AGR--DFLL-FCGIE------LLCLPMLAIGAAGS---IAA----TANVEPKE 214 (294)
T ss_pred CEEEEEeCCCCH--HHHHHHHHh----cCC--CeEE-EEcch------HHHHHHHHCCCCEE---Eec----HHhhCHHH
Confidence 789999998743 444444332 332 1222 23332 44567788898655 333 35777777
Q ss_pred HHHHHHh
Q 013498 329 VVMAFKC 335 (442)
Q Consensus 329 vv~~L~~ 335 (442)
++...+.
T Consensus 215 ~~~l~~~ 221 (294)
T TIGR02313 215 VAELCEA 221 (294)
T ss_pred HHHHHHH
Confidence 6655554
No 138
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=94.93 E-value=3.5 Score=41.25 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+..+.-.++++.|.+.||+.|=+ | |+..+.+|+. .++...+... +.+|.+++.+....+-++.+ +
T Consensus 22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------g~~pvi~gv~~~t~~ai~~a-~ 93 (296)
T TIGR03249 22 SFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-------GKVPVYTGVGGNTSDAIEIA-R 93 (296)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCccHHHHHHHH-H
Confidence 378889999999999999999876 4 3666677754 4455555432 23466777664333334443 3
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
....+|++.+.+.-|-. +..+.+++++-..+.++. .++.-+-++. .....+++.+.+++ +.-...
T Consensus 94 ~a~~~Gadav~~~pP~y-------~~~s~~~i~~~f~~v~~a---~~~pvilYn~-~g~~l~~~~~~~La----~~~~nv 158 (296)
T TIGR03249 94 LAEKAGADGYLLLPPYL-------INGEQEGLYAHVEAVCES---TDLGVIVYQR-DNAVLNADTLERLA----DRCPNL 158 (296)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---cCCCEEEEeC-CCCCCCHHHHHHHH----hhCCCE
Confidence 34567999886654432 344666666655555443 3344344552 23345666555544 433588
Q ss_pred EeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHH
Q 013498 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 330 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv 330 (442)
+.+.||.| ....+.++++. .++ +. .-+-+|+- +-...+.++.+|++. .+.| .+|.-.|.++
T Consensus 159 vgiKds~~--d~~~~~~~~~~----~~~--~~-~v~~G~~~---~d~~~~~~~~~Ga~G---~is~----~~n~~P~~~~ 219 (296)
T TIGR03249 159 VGFKDGIG--DMEQMIEITQR----LGD--RL-GYLGGMPT---AEVTAPAYLPLGVTS---YSSA----IFNFIPHIAR 219 (296)
T ss_pred EEEEeCCC--CHHHHHHHHHH----cCC--Ce-EEEeCCCc---chhhHHHHHhCCCCE---EEec----HHHhhHHHHH
Confidence 99999976 55666665543 332 11 12223310 112335567788843 3433 5677788777
Q ss_pred HHHHhc
Q 013498 331 MAFKCR 336 (442)
Q Consensus 331 ~~L~~~ 336 (442)
...+..
T Consensus 220 ~~~~~~ 225 (296)
T TIGR03249 220 AFYEAL 225 (296)
T ss_pred HHHHHH
Confidence 766543
No 139
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.93 E-value=4.8 Score=40.66 Aligned_cols=150 Identities=19% Similarity=0.106 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|.. .++...+... +.+|.|++.+..+.++.-...+
T Consensus 25 ~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-------grvpvi~Gv~~~~t~~ai~~a~ 97 (309)
T cd00952 25 TVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-------GRVPVFVGATTLNTRDTIARTR 97 (309)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-------CCCCEEEEeccCCHHHHHHHHH
Confidence 478888999999999999998876 4 4566666654 5555666543 3357788877655555433334
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCC--CCCHHHHHHHHHHHHHcC
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAG--RSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edas--r~d~~~l~~~~~~~~~~G 247 (442)
....+|++.+.+..|-- +..+.+++++-.++.++. . ++.-+.++.+..+ ..+++.+.++ .+ -
T Consensus 98 ~A~~~Gad~vlv~~P~y-------~~~~~~~l~~yf~~va~a---~~~lPv~iYn~P~~tg~~l~~~~l~~L----~~-~ 162 (309)
T cd00952 98 ALLDLGADGTMLGRPMW-------LPLDVDTAVQFYRDVAEA---VPEMAIAIYANPEAFKFDFPRAAWAEL----AQ-I 162 (309)
T ss_pred HHHHhCCCEEEECCCcC-------CCCCHHHHHHHHHHHHHh---CCCCcEEEEcCchhcCCCCCHHHHHHH----hc-C
Confidence 44567999887765531 345666766666555543 3 3553556555433 3455555444 33 3
Q ss_pred CcEEeccCcccccCHHHHHHHHHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~ 271 (442)
...+.+.||. ....+.+++..
T Consensus 163 pnivgiKdss---d~~~~~~~i~~ 183 (309)
T cd00952 163 PQVVAAKYLG---DIGALLSDLAA 183 (309)
T ss_pred CCEEEEEecC---ChHHHHHHHHH
Confidence 5899999985 34455555544
No 140
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=94.82 E-value=4.9 Score=40.30 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC---h-hH-HHHHHHHHHHhcccccccCCccceEe--eecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K-ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~-~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=--+|... + +. ...++.+++.. -+|+.. .++. ..+.+.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPV~lHLDHg~-~~e~i~~Ai 94 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY---------HHPLALHLDHHE-KFDDIAQKV 94 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCC-CHHHHHHHH
Confidence 468899999999999999997744344221 1 11 23455555532 234332 2232 456666676
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--E----ccCCC--------CCCCHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPEDA--------GRSDRKF 235 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f----~~eda--------sr~d~~~ 235 (442)
++ |...|.+ -.| ..+.+|+++..++.+++|+..|.. |+ + +.||. ..++|+.
T Consensus 95 ~~----GftSVM~--DgS--------~l~~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~pee 159 (284)
T PRK09195 95 RS----GVRSVMI--DGS--------HLPFAQNISLVKEVVDFCHRFDVS-VEAELGRLGGQEDDLQVDEADALYTDPAQ 159 (284)
T ss_pred Hc----CCCEEEe--CCC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEecccCcccCcccccccccCCCHHH
Confidence 64 8887654 233 346789999999999999999974 43 2 12332 2578887
Q ss_pred HHHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 236 LYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
..++++ +-|+|.+-++ -.=|.. .|.-=.++++.|++.++ +||.+|.=. |+....-..|+..|+.-|+
T Consensus 160 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~----vPLVLHGgS--G~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK09195 160 AREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN----IPLVLHGAS--GLPTKDIQQTIKLGICKVN 230 (284)
T ss_pred HHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCeEEecCC--CCCHHHHHHHHHcCCeEEE
Confidence 776665 5688865543 233442 35445678888888773 788877654 6667888899999998875
Q ss_pred e
Q 013498 312 V 312 (442)
Q Consensus 312 ~ 312 (442)
.
T Consensus 231 i 231 (284)
T PRK09195 231 V 231 (284)
T ss_pred e
Confidence 4
No 141
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.82 E-value=4.9 Score=40.52 Aligned_cols=204 Identities=16% Similarity=0.142 Sum_probs=117.4
Q ss_pred HHHHhHcCCCEEEE-cc---------CCCC----hhHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHH
Q 013498 107 ARQLAKLGVDIIEA-GF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 168 (442)
Q Consensus 107 a~~L~~~GV~~IEv-G~---------p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 168 (442)
++...++|++.+=+ |+ |-.. .+..+.++.|++... .|.+. |++ +...+.+.
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~---------lPv~aD~dtGyG--~~~~v~r~ 97 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVD---------VPVIMDADAGYG--NAMSVWRA 97 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CcHHHHHH
Confidence 56677889998876 32 3211 122345555554321 23333 343 33346666
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCC-CCCCHHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDA-GRSDRKFLYEILGEV 243 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-eda-sr~d~~~l~~~~~~~ 243 (442)
++.+..+|+..|+|-..+.+-++-+.-+ .+.++..++++.+++...+ .+ +.+.. .|+ .....+..++-++..
T Consensus 98 V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d-~~I~ARTDa~~~~g~deaI~Ra~aY 174 (294)
T TIGR02319 98 TREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--ED-FTIIARTDARESFGLDEAIRRSREY 174 (294)
T ss_pred HHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CC-eEEEEEecccccCCHHHHHHHHHHH
Confidence 6767778999999988766532211112 3778888887776554443 22 22221 122 123466777778888
Q ss_pred HHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCc
Q 013498 244 IKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGN 323 (442)
Q Consensus 244 ~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGN 323 (442)
.++|||.|.+. |..+++++.++.+.+. .| +.+-+-......+=. .-..-+.|++.|-..... -|+-.
T Consensus 175 ~eAGAD~ifi~---~~~~~~ei~~~~~~~~--~P----~~~nv~~~~~~p~~s--~~eL~~lG~~~v~~~~~~--~~aa~ 241 (294)
T TIGR02319 175 VAAGADCIFLE---AMLDVEEMKRVRDEID--AP----LLANMVEGGKTPWLT--TKELESIGYNLAIYPLSG--WMAAA 241 (294)
T ss_pred HHhCCCEEEec---CCCCHHHHHHHHHhcC--CC----eeEEEEecCCCCCCC--HHHHHHcCCcEEEEcHHH--HHHHH
Confidence 89999999995 6788888877776652 12 322333333333222 334445699998554443 24566
Q ss_pred ccHHHHHHHHHhcc
Q 013498 324 ASLEEVVMAFKCRG 337 (442)
Q Consensus 324 a~lEevv~~L~~~g 337 (442)
.++.+.+..|...|
T Consensus 242 ~a~~~~~~~l~~~G 255 (294)
T TIGR02319 242 SVLRKLFTELREAG 255 (294)
T ss_pred HHHHHHHHHHHHcC
Confidence 67777777776554
No 142
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=94.77 E-value=3 Score=41.14 Aligned_cols=167 Identities=20% Similarity=0.198 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE-ccCCCChhHHHHHHHHHHHhcccccccCCccceEe-eecccchhhHHHHHHHHHhCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEA-GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC-GLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEv-G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~-~~~r~~~~dI~~a~e~l~~~g 176 (442)
+..+-.++++...+.|.+.|-+ .-|.......+.++.+.+.+. .|.+. .|. ..+-+|+.+.+ +|
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~---------iPvl~kdfi-~~~~qi~~a~~----~G 133 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVS---------LPVLRKDFI-IDPYQIYEARA----AG 133 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcC---------CCEEeeeec-CCHHHHHHHHH----cC
Confidence 3445678999999999998866 112222222455555555321 24332 111 23345565555 59
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccC-
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD- 255 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laD- 255 (442)
.+.|.+-...-+ .+.+.+++++++++|+. +.+.. .+.+.+ +.+.++|++.|.+-.
T Consensus 134 AD~VlLi~~~l~--------------~~~l~~li~~a~~lGl~-~lvev-----h~~~E~----~~A~~~gadiIgin~r 189 (260)
T PRK00278 134 ADAILLIVAALD--------------DEQLKELLDYAHSLGLD-VLVEV-----HDEEEL----ERALKLGAPLIGINNR 189 (260)
T ss_pred CCEEEEEeccCC--------------HHHHHHHHHHHHHcCCe-EEEEe-----CCHHHH----HHHHHcCCCEEEECCC
Confidence 999887655411 14677899999999985 54433 223333 446688999988753
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.....|. .+++..+.+.+|+...+.-+-..++ ..+.-.+.++|++.|
T Consensus 190 dl~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~t-----~ed~~~~~~~Gad~v 237 (260)
T PRK00278 190 NLKTFEVD--LETTERLAPLIPSDRLVVSESGIFT-----PEDLKRLAKAGADAV 237 (260)
T ss_pred CcccccCC--HHHHHHHHHhCCCCCEEEEEeCCCC-----HHHHHHHHHcCCCEE
Confidence 11122222 2334444445553101122223332 567778888899887
No 143
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=94.77 E-value=1.7 Score=41.69 Aligned_cols=160 Identities=21% Similarity=0.207 Sum_probs=105.6
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhccc-cccc---CC-----c---cceEeeeccc-----
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNA-VDAE---SG-----Y---VPVICGLSRC----- 160 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~-~~~~---~~-----l---~~~i~~~~r~----- 160 (442)
-+.|+-++-.+...+.--..+-+|-.+-.|..|..+..|+...... +.+- .+ + -..+.++.+.
T Consensus 38 ~tve~av~~mk~y~~~~~~avSVGLGaGdp~Q~~~Va~Ia~~~~P~HVNQvFtgag~sr~~Lg~~~T~vN~LvsPTG~~G 117 (236)
T TIGR03581 38 PTVEEAIEDMKKYQKEIDNAVSVGLGAGDPNQSAMVADISAHTQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTPG 117 (236)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEecCCCCHHHHHHHHHHHHHcCCccccccccchHHHHHHhCCccceEEEeecCCCccc
Confidence 3567777666666555444488887777788888888888764321 1110 00 0 0112222111
Q ss_pred -----------ch----hhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 013498 161 -----------NE----RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (442)
Q Consensus 161 -----------~~----~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ 225 (442)
.. -+++.|+..++..|.+.|.+| |.-- ...+++++.+++.|.++|+. +
T Consensus 118 ~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKff-PM~G-----------l~~leE~~avA~aca~~g~~-----l 180 (236)
T TIGR03581 118 LVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFF-PMGG-----------LKHLEEYAAVAKACAKHGFY-----L 180 (236)
T ss_pred eEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEe-ecCC-----------cccHHHHHHHHHHHHHcCCc-----c
Confidence 01 246888888999999998876 3321 12356677788888888862 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEe------cc-CcccccCHHHHHHHHHHHHH
Q 013498 226 EDAGRSDRKFLYEILGEVIKVGATTLN------IP-DTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 226 edasr~d~~~l~~~~~~~~~~Gad~I~------la-DT~G~~~P~~v~~li~~l~~ 274 (442)
|-++-.|.+.+.++++.+.++|+..|. += -..|...|+++++|+..+++
T Consensus 181 EPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~ 236 (236)
T TIGR03581 181 EPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK 236 (236)
T ss_pred CCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence 678889999999999999999987542 23 45699999999999998763
No 144
>PRK09989 hypothetical protein; Provisional
Probab=94.76 E-value=3 Score=40.53 Aligned_cols=194 Identities=13% Similarity=0.019 Sum_probs=95.8
Q ss_pred HHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEe--ee----ccc----chhhHHHHHHHHH
Q 013498 104 LDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC--GL----SRC----NERDIKTAWEAVK 173 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~--~~----~r~----~~~dI~~a~e~l~ 173 (442)
.+.++.+.++|++.||+..|.. .+.+.++.+.+..+-.+.........+. .+ ... ..++++++++..+
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~--~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~ 95 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYD--YSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYAL 95 (258)
T ss_pred HHHHHHHHHcCCCEEEECCccc--CCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHH
Confidence 3567778888999999965422 2344455555433221100000000000 00 000 0234666766666
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCC----HHHHHHHHHHHHHHHHHcCCCeEEEccCCC------CCCCHHHHHHHHHHH
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKT----KQQVVEIARSMVKFARSLGCDDVEFSPEDA------GRSDRKFLYEILGEV 243 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s----~~e~l~~~~~~v~~ar~~G~~~V~f~~eda------sr~d~~~l~~~~~~~ 243 (442)
..|.+.|.++.+..+. +.+ .+...+.+.++.++|++.|.. +.+-.... .-.+.+.+.+++
T Consensus 96 ~lg~~~v~v~~g~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~l~~~~~~~~~~~~~~~~~~ll--- 165 (258)
T PRK09989 96 ALNCEQVHVMAGVVPA------GEDAERYRAVFIDNLRYAADRFAPHGKR-ILVEALSPGVKPHYLFSSQYQALAIV--- 165 (258)
T ss_pred HhCcCEEEECccCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEeCCCCCCCCCccCCHHHHHHHH---
Confidence 7788887765432210 112 234567777888888888874 44322111 111233333333
Q ss_pred HHcCCcEE-eccCcccccCHH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccccc
Q 013498 244 IKVGATTL-NIPDTVGITMPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERA 321 (442)
Q Consensus 244 ~~~Gad~I-~laDT~G~~~P~-~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGera 321 (442)
.+.+.+.+ ..-|+.-...+. ...++++.... -...+|.++..+ ... .| .
T Consensus 166 ~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~-------ri~hvHi~D~~~------------------~~~--pG--~ 216 (258)
T PRK09989 166 EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAG-------KYAHVQIAGLPD------------------RHE--PD--D 216 (258)
T ss_pred HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhh-------hEEEEEECCCCC------------------CCC--CC--C
Confidence 44454444 344775544332 23333333332 235677774111 112 34 3
Q ss_pred CcccHHHHHHHHHhccc
Q 013498 322 GNASLEEVVMAFKCRGE 338 (442)
Q Consensus 322 GNa~lEevv~~L~~~g~ 338 (442)
|..+..+++.+|+..|.
T Consensus 217 G~id~~~i~~al~~~Gy 233 (258)
T PRK09989 217 GEINYPWLFRLFDEVGY 233 (258)
T ss_pred CCcCHHHHHHHHHHcCC
Confidence 77889999999998753
No 145
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.71 E-value=3.1 Score=41.10 Aligned_cols=207 Identities=10% Similarity=0.053 Sum_probs=104.1
Q ss_pred HHHHHHHhHcCCCEEEE--ccCC------CChhHHHHHHHHHHHhcccccccCCccceEeeecccchh-------hHHHH
Q 013498 104 LDIARQLAKLGVDIIEA--GFPA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-------DIKTA 168 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEv--G~p~------~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~-------dI~~a 168 (442)
...++.+.++|.+.+|+ ..|. .++++.+.++...+..+..+.......|...-++..+++ -+..+
T Consensus 14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 34678889999999999 1232 224456666665443211100000011221122221211 12334
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC------CCCHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG------RSDRKFLYEILGE 242 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas------r~d~~~l~~~~~~ 242 (442)
++.....|.+.|.+..+.. ...+.++.++.+.+.++.+.+... .|.+.+|... -.+++.+.++++.
T Consensus 94 i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~-~v~l~lEN~~~~~~~l~~~~~el~~ll~~ 165 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETK-IVTILLENMAGQGSELGRSFEELAYIIKV 165 (274)
T ss_pred HHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccC-CCEEEEEeCCCCCCccCCCHHHHHHHHHh
Confidence 4444445777655533221 122556777777777766554322 2455555321 2367777777665
Q ss_pred HHHcCCcEEeccCcccccC--------HHHHHHHHHHHHHhCCCCcceeEEEeecCCcc-hHHHHHHHHHHhCCCEEEec
Q 013498 243 VIKVGATTLNIPDTVGITM--------PTEFGKLIADIKANTPGIENVVISTHCQNDLG-LSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 243 ~~~~Gad~I~laDT~G~~~--------P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlG-LA~ANalaAl~aGa~~vd~T 313 (442)
+.. .+.+.+|--+|.+. ++.+.++++.+.+.++. +-...+|+|++.. ++ .| +.-+.
T Consensus 166 ~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~--~~i~~vHl~Ds~~~~g---------~~-~d~H~- 230 (274)
T TIGR00587 166 IVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGF--KYLKAIHLNDSKNVLG---------SR-KDRHE- 230 (274)
T ss_pred cCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCH--hheeEEEEEcCccccc---------cC-cCCCC-
Confidence 521 24555554333322 66677777777655431 1345688887631 10 00 11111
Q ss_pred ccccccccCcccHHHHHHHHHhcc
Q 013498 314 INGIGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 314 v~GlGeraGNa~lEevv~~L~~~g 337 (442)
-+|+ |+.+.+.++..|+..+
T Consensus 231 --~iG~--G~i~~~~~~~~L~~~~ 250 (274)
T TIGR00587 231 --NIGE--GIIGFDAFRLIMDDER 250 (274)
T ss_pred --CcCC--ccCCHHHHHHHHcCcc
Confidence 2333 7889999988887653
No 146
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=94.68 E-value=0.82 Score=46.40 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCCCcCCCCCC----CCCCHHHHHHHHHHHhHcCCCEEEE-----ccCCCChhHHHHHHHHHHHhcccccccCCccceEe
Q 013498 85 TTLRDGEQSPG----ATLTSKEKLDIARQLAKLGVDIIEA-----GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC 155 (442)
Q Consensus 85 tTLRDG~Q~~g----~~fs~e~kl~ia~~L~~~GV~~IEv-----G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~ 155 (442)
|+.=+|..|.- .....|.-++-++...+..-+-+|+ |-|..-|--.+.++.+.+..+.. .+ .|.
T Consensus 124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~------vV-SmQ 196 (414)
T COG2100 124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVE------VV-SMQ 196 (414)
T ss_pred EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCce------EE-EEe
Confidence 44556665542 2346788888888888887777887 55766666667888877764332 11 111
Q ss_pred eec-ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 156 GLS-RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 156 ~~~-r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
.-+ -.+++- ++.+.++|+++|++++..-|..+.+.+-=-....++.+.++++++.+.|+. |-+.+-...-.+.+
T Consensus 197 Tng~~L~~~l----v~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~id-vlIaPv~lPG~ND~ 271 (414)
T COG2100 197 TNGVLLSKKL----VDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGID-VLIAPVWLPGVNDD 271 (414)
T ss_pred eCceeccHHH----HHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCC-EEEeeeecCCcChH
Confidence 111 113333 344556799999999888887777666433455678888999999999985 77776555556667
Q ss_pred HHHHHHHHHHHcCC
Q 013498 235 FLYEILGEVIKVGA 248 (442)
Q Consensus 235 ~l~~~~~~~~~~Ga 248 (442)
+..++++.+.+.||
T Consensus 272 E~~~iIe~A~~iGa 285 (414)
T COG2100 272 EMPKIIEWAREIGA 285 (414)
T ss_pred HHHHHHHHHHHhCC
Confidence 78888888888884
No 147
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.67 E-value=0.7 Score=43.84 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.++-+++++.|.+.|++.||+.+- ++.-.+.++.+.+..++- .+-+=+-.+.++++.++++ |.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~--t~~a~~~I~~l~~~~p~~---------~vGAGTV~~~e~a~~a~~a----GA 81 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLR--TPNALEAIEALRKEFPDL---------LVGAGTVLTAEQAEAAIAA----GA 81 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETT--STTHHHHHHHHHHHHTTS---------EEEEES--SHHHHHHHHHH----T-
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecC--CccHHHHHHHHHHHCCCC---------eeEEEeccCHHHHHHHHHc----CC
Confidence 46788899999999999999999874 465677888887765321 1222223478888888887 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec--cC
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PD 255 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l--aD 255 (442)
+.+.. |..+ .+.+++++++|+. +.=++ .+|.++ ..+.++|++.+-+ ++
T Consensus 82 ~FivS--P~~~------------------~~v~~~~~~~~i~-~iPG~-----~TptEi----~~A~~~G~~~vK~FPA~ 131 (196)
T PF01081_consen 82 QFIVS--PGFD------------------PEVIEYAREYGIP-YIPGV-----MTPTEI----MQALEAGADIVKLFPAG 131 (196)
T ss_dssp SEEEE--SS--------------------HHHHHHHHHHTSE-EEEEE-----SSHHHH----HHHHHTT-SEEEETTTT
T ss_pred CEEEC--CCCC------------------HHHHHHHHHcCCc-ccCCc-----CCHHHH----HHHHHCCCCEEEEecch
Confidence 65432 3221 2678899999984 32233 234433 3556899997665 45
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.+| =..+++.|+.-+|+ +++-. .-|.-..|.-.-+.+|+..+
T Consensus 132 ~~G------G~~~ik~l~~p~p~---~~~~p----tGGV~~~N~~~~l~ag~~~v 173 (196)
T PF01081_consen 132 ALG------GPSYIKALRGPFPD---LPFMP----TGGVNPDNLAEYLKAGAVAV 173 (196)
T ss_dssp TTT------HHHHHHHHHTTTTT----EEEE----BSS--TTTHHHHHTSTTBSE
T ss_pred hcC------cHHHHHHHhccCCC---CeEEE----cCCCCHHHHHHHHhCCCEEE
Confidence 555 13678888887775 44433 33555578888999997654
No 148
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=94.67 E-value=4.6 Score=40.49 Aligned_cols=191 Identities=19% Similarity=0.192 Sum_probs=120.8
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEeeeccc-
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC- 160 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~- 160 (442)
.+.+..+ ..++.+....+++.-.+.+.+.|=--+|.... +. ...++.+++.. -+|+..=+=-+
T Consensus 13 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~ 83 (282)
T TIGR01858 13 AGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTY---------NMPLALHLDHHE 83 (282)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCC
Confidence 3444443 24688999999999999999987544443221 11 23444444432 24543322222
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC------
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------ 228 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda------ 228 (442)
+.+.+.+|+++ |...|.+ -.| ..+.+|+++..++.+++|+..|+. |+- +.||.
T Consensus 84 ~~e~i~~ai~~----GFtSVM~--DgS--------~lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~ 148 (282)
T TIGR01858 84 SLDDIRQKVHA----GVRSAMI--DGS--------HFPFAQNVKLVKEVVDFCHRQDCS-VEAELGRLGGVEDDLSVDEE 148 (282)
T ss_pred CHHHHHHHHHc----CCCEEee--cCC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEecCCccCCCccccc
Confidence 45666666664 8887654 233 246789999999999999999984 532 22332
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 229 --GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 229 --sr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
..++|+...++++ +-|+|.+-++ -.=|.. .|.-=.++++.|++.++ +||.+|+= -|+..-.-..|
T Consensus 149 ~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~----iPLVlHGg--SG~~~e~~~~a 219 (282)
T TIGR01858 149 DALYTDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD----VPLVLHGA--SDVPDEDVRRT 219 (282)
T ss_pred hhccCCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC----CCeEEecC--CCCCHHHHHHH
Confidence 2678887766654 5689865554 222332 35555678888888873 77887764 45557778889
Q ss_pred HHhCCCEEEe
Q 013498 303 ACAGARQVEV 312 (442)
Q Consensus 303 l~aGa~~vd~ 312 (442)
+..|+.-|+.
T Consensus 220 i~~Gi~KiNi 229 (282)
T TIGR01858 220 IELGICKVNV 229 (282)
T ss_pred HHcCCeEEEe
Confidence 9999988854
No 149
>PTZ00413 lipoate synthase; Provisional
Probab=94.65 E-value=2 Score=44.76 Aligned_cols=159 Identities=13% Similarity=0.100 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCC---ChhHHH----HHHHHHHHhcccccccCCccceEeeecccchhhHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDFE----AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~---~~~d~e----~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (442)
..++.++-.++|+...+.|++++-+++... .+.+++ .++.|.+..+. ..|+++.. ....-+.+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~---------~~Ievlig-Df~g~~e~ 244 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPE---------LLLEALVG-DFHGDLKS 244 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCC---------CeEEEcCC-ccccCHHH
Confidence 457999999999999999999887766422 122333 44444332111 12333321 00101236
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhC---CCHHHHHHHHHHHHHHHHHc---CCCeEEEccCCCCCCCHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSL---GCDDVEFSPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ar~~---G~~~V~f~~edasr~d~~~l~~~~~~ 242 (442)
++.++.+|+++++--+-+++-+... .+ -+.++. .+.++++|+. |+. ++=+.+-+---+.+++.++++.
T Consensus 245 l~~L~eAG~dvynHNLETv~rLyp~-VRt~~atYe~s----Le~Lr~AKe~f~~gi~-tcSGiIVGLGET~eEvie~m~d 318 (398)
T PTZ00413 245 VEKLANSPLSVYAHNIECVERITPY-VRDRRASYRQS----LKVLEHVKEFTNGAML-TKSSIMLGLGETEEEVRQTLRD 318 (398)
T ss_pred HHHHHhcCCCEEecccccCHhHHHH-HccCcCCHHHH----HHHHHHHHHHhcCCce-EeeeeEecCCCCHHHHHHHHHH
Confidence 6777888999999888888765533 33 244544 4567777766 653 3222222222335778899999
Q ss_pred HHHcCCcEEeccC----------cccccCHHHHHHHHH
Q 013498 243 VIKVGATTLNIPD----------TVGITMPTEFGKLIA 270 (442)
Q Consensus 243 ~~~~Gad~I~laD----------T~G~~~P~~v~~li~ 270 (442)
+.+.|+|.+.|.- -.-+.+|+++.++=.
T Consensus 319 LrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~ 356 (398)
T PTZ00413 319 LRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEE 356 (398)
T ss_pred HHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHH
Confidence 9999999988732 224567777665543
No 150
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.62 E-value=5.5 Score=39.94 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=118.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC---h-hHH-HHHHHHHHHhcccccccCCccceEe--eecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K-EDF-EAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~-~d~-e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=-.+|... . +.+ ..++.+++.. .+|+.. .++. +.++|.+|+
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~---------~VPValHLDH~~-~~e~i~~ai 94 (284)
T PRK12857 25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKA---------SVPVALHLDHGT-DFEQVMKCI 94 (284)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCC-CHHHHHHHH
Confidence 468899999999999999997754455322 1 112 3455555532 234332 2232 456677777
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC--------CCCCHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKF 235 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda--------sr~d~~~ 235 (442)
++ |...|.+ . .| ..+.+|+++..++.+++|+..|.. |+- +.|+. ..++|+.
T Consensus 95 ~~----GftSVM~-D-gS--------~lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~vgg~e~~~~~~~~~~~~T~pe~ 159 (284)
T PRK12857 95 RN----GFTSVMI-D-GS--------KLPLEENIALTKKVVEIAHAVGVS-VEAELGKIGGTEDDITVDEREAAMTDPEE 159 (284)
T ss_pred Hc----CCCeEEE-e-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEeeecCCccCCCCcccchhhcCCHHH
Confidence 65 8877654 2 33 236789999999999999999984 532 22332 1578887
Q ss_pred HHHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 236 LYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
..++++ +-|+|.+-++ -.=|.. .|.--.++++.|++.++ +||.+|. .-|+.-.+-..|++.|+.-|+
T Consensus 160 a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~----vPLVlHG--gSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 160 ARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN----IPIVLHG--SSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred HHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHHHHHHcCCeEEE
Confidence 766664 4588865443 233433 46556778888888763 6787665 457778888899999988875
Q ss_pred e
Q 013498 312 V 312 (442)
Q Consensus 312 ~ 312 (442)
.
T Consensus 231 i 231 (284)
T PRK12857 231 I 231 (284)
T ss_pred e
Confidence 4
No 151
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=94.57 E-value=3.6 Score=42.63 Aligned_cols=208 Identities=14% Similarity=0.144 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEcc--CCCChhH-----HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGF--PAASKED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d-----~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
+.++-+++|+.|.+.|+..+=-|+ |..+|.. .+-++.+.+..... ++ +.++ .-...++++.+.+.
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~-----Gl-~~~t--~v~d~~~~~~l~~~ 201 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEY-----GL-AVIS--EIVNPADVEVALDY 201 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHc-----CC-CEEE--eeCCHHHHHHHHHh
Confidence 689999999999999999887774 4444422 23333333332111 22 2222 12355666655442
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
++.+.| +..+.. + .++++++.+.|.. |.+.- +.-.+++.+...++.+.+.|...|
T Consensus 202 -----vd~lkI--~s~~~~--------------n-~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i~~~Gn~~i 256 (360)
T PRK12595 202 -----VDVIQI--GARNMQ--------------N-FELLKAAGRVNKP-VLLKR--GLSATIEEFIYAAEYIMSQGNGQI 256 (360)
T ss_pred -----CCeEEE--Cccccc--------------C-HHHHHHHHccCCc-EEEeC--CCCCCHHHHHHHHHHHHHCCCCCE
Confidence 454443 333211 1 2566777778875 77643 223678889999999999999889
Q ss_pred eccC-cc-cc--cCHHHH-HHHHHHHHHhCCCCcceeEEE-eecCCcc---hHHHHHHHHHHhCCC--EEEecccccccc
Q 013498 252 NIPD-TV-GI--TMPTEF-GKLIADIKANTPGIENVVIST-HCQNDLG---LSTANTIAGACAGAR--QVEVTINGIGER 320 (442)
Q Consensus 252 ~laD-T~-G~--~~P~~v-~~li~~l~~~~p~~~~v~i~~-H~HNDlG---LA~ANalaAl~aGa~--~vd~Tv~GlGer 320 (442)
.|+. .+ .+ ..+... -.-|..+++.+. +||++ =.|- .| +...-+++|+..||+ .|+.=+.- +.
T Consensus 257 ~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~----~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~dp--~~ 329 (360)
T PRK12595 257 ILCERGIRTYEKATRNTLDISAVPILKQETH----LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHPDP--AV 329 (360)
T ss_pred EEECCccCCCCCCCCCCcCHHHHHHHHHHhC----CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecCCC--CC
Confidence 9987 22 11 111211 233556777553 56777 3443 55 777899999999996 66655521 11
Q ss_pred cCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHHHHHHHhC
Q 013498 321 AGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASKMVEEYTG 365 (442)
Q Consensus 321 aGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~~g 365 (442)
+ +. .....++++.|.++.+.+.++..
T Consensus 330 a---------------~~----D~~~sl~p~el~~l~~~i~~~~~ 355 (360)
T PRK12595 330 A---------------LS----DSAQQMDIPEFDRFLDELKPLAN 355 (360)
T ss_pred C---------------CC----chhhhCCHHHHHHHHHHHHHHHH
Confidence 1 11 11245777777777766665543
No 152
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=94.56 E-value=2.2 Score=44.44 Aligned_cols=259 Identities=21% Similarity=0.121 Sum_probs=146.1
Q ss_pred CCCCCCCCCCCCCceEEEeCCC---C-cCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEE--c-cCCCChh-HHHHHHHHH
Q 013498 66 RPEYIPNRIPDPNYVRVFDTTL---R-DGEQSPGATLTSKEKLDIARQLAKLGVDIIEA--G-FPAASKE-DFEAVRTIA 137 (442)
Q Consensus 66 ~~~~~~~~~~~~~~V~I~DtTL---R-DG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEv--G-~p~~~~~-d~e~v~~l~ 137 (442)
..-|+.|..-....+-..+|+. | +-....+..++.++.++.++.+.+.|+..|-+ | .|..+.+ ..+.++.+.
T Consensus 54 ~vtyv~n~~in~TN~C~~~C~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik 133 (370)
T COG1060 54 GVTYVVNRNINYTNICVNDCTFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIK 133 (370)
T ss_pred cEEEEEeecCCcchhhcCCCCccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHH
Confidence 4556666655555577777764 2 22222467899999999999999999998766 4 2544322 224556555
Q ss_pred HHhcccccccCCccce-EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHH------HhCCCHHHHHHHHHHHH
Q 013498 138 KEVGNAVDAESGYVPV-ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEH------KLRKTKQQVVEIARSMV 210 (442)
Q Consensus 138 ~~~~~~~~~~~~l~~~-i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~------~l~~s~~e~l~~~~~~v 210 (442)
+..++ +. ...+.+. +.-+++.....++..++.|+.+|.+.+-. ...+++.+. --+++.++.+ +..
T Consensus 134 ~~~p~-~~-i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg--~~aeil~e~vr~~~~p~K~~~~~wl----e~~ 205 (370)
T COG1060 134 EEFPD-LH-IHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPG--GGAEILSEEVRKIHCPPKKSPEEWL----EIH 205 (370)
T ss_pred HhCcc-hh-hcccCHHHhHHHHhccCCCHHHHHHHHHHcCCCcCcC--cceeechHHHHHhhCCCCCCHHHHH----HHH
Confidence 53221 00 0011111 21122223334455667777888886532 233333332 2245777766 478
Q ss_pred HHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHH----cC-CcEEec-----cCc------ccccCHHHHHHHHHHHHH
Q 013498 211 KFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK----VG-ATTLNI-----PDT------VGITMPTEFGKLIADIKA 274 (442)
Q Consensus 211 ~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~----~G-ad~I~l-----aDT------~G~~~P~~v~~li~~l~~ 274 (442)
+.|.++|+..+...+ ...--++++..+-+..+.+ .| ...|.+ ..+ ..-..+.+.-..|+..|-
T Consensus 206 ~~Ah~lGI~~tatml-~Gh~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi 284 (370)
T COG1060 206 ERAHRLGIPTTATML-LGHVETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARI 284 (370)
T ss_pred HHHHHcCCCccceeE-EEecCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHH
Confidence 889999997432211 1111223433333333332 23 333222 233 223556677777776665
Q ss_pred hCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc--cccccC-----cccHHHHHHHHHhcc
Q 013498 275 NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING--IGERAG-----NASLEEVVMAFKCRG 337 (442)
Q Consensus 275 ~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G--lGeraG-----Na~lEevv~~L~~~g 337 (442)
.++. .+...-=-.+-+++.-+.+++.+||+-+.+|... +=..+| +.+.|+++..++..|
T Consensus 285 ~l~~----~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG 350 (370)
T COG1060 285 FLDN----NISNIQASWLRDGVILAQAALLSGANDLGGTGYEEKVNPAAGAFSGDWRSVEELAALIKEAG 350 (370)
T ss_pred HccC----ccccccCcccccchHHHHHHHHhCcccCcCCCcccccccccccccCCCCCHHHHHHHHHHcC
Confidence 5542 1232333445566667889999999999988877 222566 888899999888765
No 153
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=94.56 E-value=4.8 Score=43.56 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEccCCCChhH---HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFPAASKED---FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p~~~~~d---~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
++.++-++.+.+.|.|+|.+|..+..|+. ...++.+.+.. . .| ++ .=-.+.+-++.|+++ |.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~--------~-~p-IS-IDT~~~~v~eaAL~a----GA 229 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL--------D-SP-VI-ADTPTLDELYEALKA----GA 229 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC--------C-Cc-EE-EeCCCHHHHHHHHHc----CC
Confidence 77888899999999999999986554431 22444443321 0 12 21 222366677777765 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~ 257 (442)
+.|. ++|. .+..++.+.+++.|.. +...+.+ ...+.+++.+.++.+.++|.+.| +.|-.
T Consensus 230 diIN---sVs~---------------~~~d~~~~l~a~~g~~-vVlm~~~-~~~~~~~l~~~ie~a~~~Gi~~I-IlDPg 288 (499)
T TIGR00284 230 SGVI---MPDV---------------ENAVELASEKKLPEDA-FVVVPGN-QPTNYEELAKAVKKLRTSGYSKV-AADPS 288 (499)
T ss_pred CEEE---ECCc---------------cchhHHHHHHHHcCCe-EEEEcCC-CCchHHHHHHHHHHHHHCCCCcE-EEeCC
Confidence 7665 4432 1122455667778875 4444422 12334899999999999999764 44543
Q ss_pred cccCHHHHHHHHHHHH---HhCCCCcceeEEEe-e-----cCCcchHHHHHHHHHHhCCCEEEec
Q 013498 258 GITMPTEFGKLIADIK---ANTPGIENVVISTH-C-----QNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 258 G~~~P~~v~~li~~l~---~~~p~~~~v~i~~H-~-----HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
=-..+..+.+-+..++ +.++- .+-+|+= . =+..|.-.+-+..|++.||+.|=++
T Consensus 289 lg~~~~~l~~sL~~l~~~r~~~~~--Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvh 351 (499)
T TIGR00284 289 LSPPLLGLLESIIRFRRASRLLNV--PLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVV 351 (499)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCC--cEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEc
Confidence 2223444555555554 34541 2444431 0 0234444555567888899887443
No 154
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.56 E-value=5.4 Score=39.57 Aligned_cols=194 Identities=16% Similarity=0.213 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEc-----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAG-----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG-----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.+..+.-.++++.|.+.|++-|=++ +...+.+|+. .++...+..+ +.+|.+.+.+....++ ++.+
T Consensus 18 ~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-------~~~~vi~gv~~~st~~~i~~a- 89 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-------GRVPVIAGVGANSTEEAIELA- 89 (289)
T ss_dssp SB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-------TSSEEEEEEESSSHHHHHHHH-
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-------CceEEEecCcchhHHHHHHHH-
Confidence 4678888999999999999998873 2344555543 4455555442 2356777777655544 4444
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~G 247 (442)
+..+.+|++.+.+..|.. ++.|.++.++-..+.++ .-+..-+-++.+. ....+++.+.+ +.+ -
T Consensus 90 ~~a~~~Gad~v~v~~P~~-------~~~s~~~l~~y~~~ia~---~~~~pi~iYn~P~~tg~~ls~~~l~~----L~~-~ 154 (289)
T PF00701_consen 90 RHAQDAGADAVLVIPPYY-------FKPSQEELIDYFRAIAD---ATDLPIIIYNNPARTGNDLSPETLAR----LAK-I 154 (289)
T ss_dssp HHHHHTT-SEEEEEESTS-------SSCCHHHHHHHHHHHHH---HSSSEEEEEEBHHHHSSTSHHHHHHH----HHT-S
T ss_pred HHHhhcCceEEEEecccc-------ccchhhHHHHHHHHHHh---hcCCCEEEEECCCccccCCCHHHHHH----Hhc-C
Confidence 334668999887766632 35677776665555542 2334334444432 33445555544 444 5
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
...+.+.|+.|-. ..+.++++ ..-++ +. -+.+ +|- + .+.++.+|++.+-++ .+|.-.+
T Consensus 155 ~nv~giK~s~~~~--~~~~~~~~---~~~~~---~~-v~~G-~d~-~----~~~~l~~G~~G~is~-------~~n~~P~ 212 (289)
T PF00701_consen 155 PNVVGIKDSSGDL--ERLIQLLR---AVGPD---FS-VFCG-DDE-L----LLPALAAGADGFISG-------LANVFPE 212 (289)
T ss_dssp TTEEEEEESSSBH--HHHHHHHH---HSSTT---SE-EEES-SGG-G----HHHHHHTTSSEEEES-------GGGTHHH
T ss_pred CcEEEEEcCchhH--HHHHHHhh---hcccC---ee-eecc-ccc-c----ccccccccCCEEEEc-------ccccChH
Confidence 6899999988754 34444333 22222 22 2334 222 2 257778898765433 3566566
Q ss_pred HHHHHHHh
Q 013498 328 EVVMAFKC 335 (442)
Q Consensus 328 evv~~L~~ 335 (442)
.++...+.
T Consensus 213 ~~~~i~~~ 220 (289)
T PF00701_consen 213 LIVEIYDA 220 (289)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
No 155
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.52 E-value=4.7 Score=40.23 Aligned_cols=197 Identities=14% Similarity=0.121 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|+. .++...+... +.+|.|++.+....+-++.+ +
T Consensus 17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-------~~~pvi~gv~~~t~~~i~~a-~ 88 (289)
T cd00951 17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-------GRVPVLAGAGYGTATAIAYA-Q 88 (289)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCCEEEecCCCHHHHHHHH-H
Confidence 378888899999999999998866 3 3555666654 5555555542 23467777664333334433 3
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
..+.+|++.+.+.-|.. +..+.++.++-..+.++. .++.-+-++. .....+++.+.+++ +.-...
T Consensus 89 ~a~~~Gad~v~~~pP~y-------~~~~~~~i~~~f~~v~~~---~~~pi~lYn~-~g~~l~~~~l~~L~----~~~pni 153 (289)
T cd00951 89 AAEKAGADGILLLPPYL-------TEAPQEGLYAHVEAVCKS---TDLGVIVYNR-ANAVLTADSLARLA----ERCPNL 153 (289)
T ss_pred HHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEeC-CCCCCCHHHHHHHH----hcCCCE
Confidence 44667999886654432 234666666655555443 3454344553 23345666665554 323478
Q ss_pred EeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHH
Q 013498 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 330 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv 330 (442)
+.+.||.| ....+.++++. .++ + +.+-+-+ +..-...+.++.+|++.. +.| .+|.-.|.++
T Consensus 154 vgiKds~~--d~~~~~~~~~~----~~~--~--~~v~~G~--~~~d~~~~~~l~~Ga~G~---is~----~~n~~P~~~~ 214 (289)
T cd00951 154 VGFKDGVG--DIELMRRIVAK----LGD--R--LLYLGGL--PTAEVFALAYLAMGVPTY---SSA----VFNFVPEIAL 214 (289)
T ss_pred EEEEeCCC--CHHHHHHHHHh----cCC--C--eEEEeCC--CcchHhHHHHHHCCCCEE---Eec----hhhhhHHHHH
Confidence 99999987 44566655433 332 1 2222221 112233567788897765 222 3577777776
Q ss_pred HHHHh
Q 013498 331 MAFKC 335 (442)
Q Consensus 331 ~~L~~ 335 (442)
...+.
T Consensus 215 ~l~~~ 219 (289)
T cd00951 215 AFYAA 219 (289)
T ss_pred HHHHH
Confidence 66554
No 156
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=94.51 E-value=0.81 Score=39.85 Aligned_cols=137 Identities=15% Similarity=0.081 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHH-hHcCCCEEEEcc--CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 95 GATLTSKEKLDIARQL-AKLGVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L-~~~GV~~IEvG~--p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
...++.++.++.++.+ .+.|+..|..|. |...++..+.+..+.+..+. + ..+.-.+.....+ +..++.
T Consensus 25 ~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~------~--~~i~~~t~~~~~~-~~~l~~ 95 (166)
T PF04055_consen 25 PREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKR------G--IRISINTNGTLLD-EELLDE 95 (166)
T ss_dssp CEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCT------T--EEEEEEEESTTHC-HHHHHH
T ss_pred cccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcc------c--cceeeeccccchh-HHHHHH
Confidence 4678999999999999 799988888853 55555555555555543211 1 1222222222222 445566
Q ss_pred HHhCCCCEEEEeecCChHH-HHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHH
Q 013498 172 VKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h-~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~ 242 (442)
+...+.+.+.+.+...+-. ....++. ....+.+.+.++.+++.|+..+...+.-....+.+.+.++++.
T Consensus 96 l~~~~~~~i~~~l~s~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 96 LKKLGVDRIRISLESLDEESVLRIINR--GKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHTTCSEEEEEEBSSSHHHHHHHHSS--TSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHhcCccEEecccccCCHHHhhhhhcC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 6667888888876666555 6666642 2335667788999999987512221111122345666666654
No 157
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=94.50 E-value=5.4 Score=40.04 Aligned_cols=184 Identities=18% Similarity=0.148 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----h-HHHHHHHHHHHhcccccccCCccceEee--ecccchhhHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----E-DFEAVRTIAKEVGNAVDAESGYVPVICG--LSRCNERDIKTA 168 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----~-d~e~v~~l~~~~~~~~~~~~~l~~~i~~--~~r~~~~dI~~a 168 (442)
.++.+....+.+.-.+.+.+.|=--+|.... + -...++.+++.... -+|+..- ++. +.+++.+|
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------~vPV~lHLDHg~-~~e~i~~a 96 (286)
T PRK08610 25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNI-------TIPVAIHLDHGS-SFEKCKEA 96 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCC-------CCCEEEECCCCC-CHHHHHHH
Confidence 4688999999999999999987554443221 1 12344555443210 1343322 222 45666666
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC------CCCCHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFL 236 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda------sr~d~~~l 236 (442)
+++ |...|.+= .| ..+.+|+++..++.+++|+..|.. |+- +.||. ..++|+..
T Consensus 97 i~~----GftSVM~D--gS--------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~yT~peea 161 (286)
T PRK08610 97 IDA----GFTSVMID--AS--------HSPFEENVATTKKVVEYAHEKGVS-VEAELGTVGGQEDDVVADGIIYADPKEC 161 (286)
T ss_pred HHc----CCCEEEEe--CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeccCCccCCCCCcccccCCHHHH
Confidence 664 88876542 33 346789999999999999999984 532 22332 25788877
Q ss_pred HHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 237 YEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.++++ +-|+|.+-++ -.=|.- .|.--.++++.+++.++ +||.+|+ .-|+..-+-..|+..|+.-|+.
T Consensus 162 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~----vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi 232 (286)
T PRK08610 162 QELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG----LPLVLHG--GTGIPTKDIQKAIPFGTAKINV 232 (286)
T ss_pred HHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC----CCEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 77664 5688854443 222332 34444677788888763 7788666 4677778888999999888754
No 158
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.46 E-value=2.8 Score=42.10 Aligned_cols=204 Identities=19% Similarity=0.183 Sum_probs=118.5
Q ss_pred HHHHhHcCCCEEEEc---------cCCCC----hhHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHHH
Q 013498 107 ARQLAKLGVDIIEAG---------FPAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (442)
Q Consensus 107 a~~L~~~GV~~IEvG---------~p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (442)
++...++|++.|=++ +|-.+ .+..+.++.|.+... .|.+. |++ +...+.+.+
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~---------iPviaD~d~GyG--~~~~v~~tv 94 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTD---------LPLLVDADTGFG--EAFNVARTV 94 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccC---------CCEEEECCCCCC--CHHHHHHHH
Confidence 455667799888663 34211 122455666655421 24443 344 466677777
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhC---CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCC-CCCCHHHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDA-GRSDRKFLYEILGEVI 244 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-eda-sr~d~~~l~~~~~~~~ 244 (442)
+.+..+|+..|+|-..+++-++-+.-+ .+.++.+++++.+.+..+ +.+ +.+.. .|+ .....+..++-++...
T Consensus 95 ~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d-~~IiARTDa~~~~g~deAI~Ra~ay~ 171 (285)
T TIGR02317 95 REMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DED-FVIIARTDARAVEGLDAAIERAKAYV 171 (285)
T ss_pred HHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCC-EEEEEEcCcccccCHHHHHHHHHHHH
Confidence 777788999999988776532221112 367788887776654433 232 22222 122 2334677777788889
Q ss_pred HcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcc
Q 013498 245 KVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNA 324 (442)
Q Consensus 245 ~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa 324 (442)
++|||.|.+. |..+++++.++.+.+. .| +.+-+-..+..++= +.-..-+.|++.|-....+ =|+-+.
T Consensus 172 ~AGAD~vfi~---g~~~~e~i~~~~~~i~--~P----l~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~--~~aa~~ 238 (285)
T TIGR02317 172 EAGADMIFPE---ALTSLEEFRQFAKAVK--VP----LLANMTEFGKTPLF--TADELREAGYKMVIYPVTA--FRAMNK 238 (285)
T ss_pred HcCCCEEEeC---CCCCHHHHHHHHHhcC--CC----EEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHH--HHHHHH
Confidence 9999999994 6667888777666542 22 32233333322221 2334446699998654433 356667
Q ss_pred cHHHHHHHHHhcc
Q 013498 325 SLEEVVMAFKCRG 337 (442)
Q Consensus 325 ~lEevv~~L~~~g 337 (442)
++++.+..+...|
T Consensus 239 a~~~~~~~l~~~g 251 (285)
T TIGR02317 239 AAEAVYNEIKEHG 251 (285)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777777654
No 159
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=94.44 E-value=2 Score=42.80 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
..++.++..++++.+.+.|++.|-+ |-|-..++-.+.++.+.+. + + ..+...+ |---++..++.++
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~-g--------~-~~v~i~T--NG~ll~~~~~~l~ 105 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY-G--------I-KDVSMTT--NGILLEKLAKKLK 105 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhC-C--------C-ceEEEEc--CchHHHHHHHHHH
Confidence 3588999999999999999998877 4565555434555555442 1 1 0111111 2212223344456
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC-CCHHHHHHHHHHHHHcCCcE
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr-~d~~~l~~~~~~~~~~Gad~ 250 (442)
.+|+++|.+.+-..+......+.. ...++.+.+.++.+++.|+..|.++.. ..+ .+.+.+.++++.+.+.|++.
T Consensus 106 ~~g~~~v~iSld~~~~~~~~~i~~--~~~~~~vl~~i~~~~~~G~~~v~i~~v-~~~g~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 106 EAGLDRVNVSLDTLDPEKYKKITG--RGALDRVIEGIESAVDAGLTPVKLNMV-VLKGINDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred HCCCCEEEEEecCCCHHHhhhccC--CCcHHHHHHHHHHHHHcCCCcEEEEEE-EeCCCCHHHHHHHHHHHHhcCCEE
Confidence 679999988765543333223322 235677778888899998742444331 123 45678999999999999873
No 160
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=94.39 E-value=0.019 Score=52.90 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=89.4
Q ss_pred HHHHhHcCCCEEEEccCCCCh-----hHHHHHHHHHHHhcccccccCCccceEeeecc----------cc------hhhH
Q 013498 107 ARQLAKLGVDIIEAGFPAASK-----EDFEAVRTIAKEVGNAVDAESGYVPVICGLSR----------CN------ERDI 165 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~p~~~~-----~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r----------~~------~~dI 165 (442)
++.+.++|++.||+.+....+ .+.+.++.+.+..+-.+ ..+....+ .+ .+.+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i-------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 73 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKI-------ASLHPPTNFWSPDEENGSANDEREEALEYL 73 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEE-------EEEEEEESSSCTGTTSTTSSSHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeE-------EEEecccccccccccccCcchhhHHHHHHH
Confidence 367889999999997532222 23555655555432211 11111111 11 3455
Q ss_pred HHHHHHHHhCCCCEEEEeec---CC-hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC----CCHHHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIA---TS-GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR----SDRKFLY 237 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~---~S-d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr----~d~~~l~ 237 (442)
+.+++..+..|.+.+.+..+ .. +... ....+...+.+.+++++|++.|+. +.+-...... .+.+.+.
T Consensus 74 ~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 74 KKAIDLAKRLGAKYIVVHSGRYPSGPEDDT----EENWERLAENLRELAEIAEEYGVR-IALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHTBSEEEEECTTESSSTTSSH----HHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHhCCCceeecCcccccccCCCH----HHHHHHHHHHHHHHHhhhhhhcce-EEEecccCccccchhhHHHHH
Confidence 66667666779898887755 11 1111 123456677788888999999973 5553321111 1225555
Q ss_pred HHHHHHHHcCCcEEecc-Cccccc-CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcc
Q 013498 238 EILGEVIKVGATTLNIP-DTVGIT-MPTEFGKLIADIKANTPGIENVVISTHCQNDLG 293 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~la-DT~G~~-~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlG 293 (442)
++++. .+-+.+.++ ||.-.. ......+.++.+... ...+|.+|..+
T Consensus 149 ~~l~~---~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~-------i~~vHi~D~~~ 196 (213)
T PF01261_consen 149 RLLEE---VDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR-------IKHVHIKDANG 196 (213)
T ss_dssp HHHHH---HTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG-------EEEEEE-EESS
T ss_pred HHHhh---cCCCcceEEEehHHHHHcCCCHHHHHHHhhcc-------eeEEEEeCCCC
Confidence 55544 454434444 554222 134566666666654 37899988877
No 161
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=94.39 E-value=5.9 Score=39.32 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-cc----CCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-GF----PAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G~----p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.+..+.-.++++.|.+.||+-|=+ |. +..+.+|+. .++...+... +.+|.+.+.+..+.++ ++++-
T Consensus 15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-------~~~~vi~gv~~~s~~~~i~~a~ 87 (285)
T TIGR00674 15 SVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-------GRVPVIAGTGSNATEEAISLTK 87 (285)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-------CCCeEEEeCCCccHHHHHHHHH
Confidence 478888999999999999998866 43 555666654 5555555542 2346677766544444 44443
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~G 247 (442)
..+.+|++.|.+.-|.. +..+.+++++-..+.++.+ ++..+-++... ....+++.+.+++ +.+
T Consensus 88 -~a~~~Gad~v~v~pP~y-------~~~~~~~i~~~~~~i~~~~---~~pi~lYn~P~~tg~~l~~~~l~~L~----~~~ 152 (285)
T TIGR00674 88 -FAEDVGADGFLVVTPYY-------NKPTQEGLYQHFKAIAEEV---DLPIILYNVPSRTGVSLYPETVKRLA----EEP 152 (285)
T ss_pred -HHHHcCCCEEEEcCCcC-------CCCCHHHHHHHHHHHHhcC---CCCEEEEECcHHhcCCCCHHHHHHHH----cCC
Confidence 33567999887765542 3446667666665555543 45435555543 3355666665554 433
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
..+.+.||.|- ...+.++++ ..++ + +.+-.=+|. ..+.++..|++.. +.| .+|.-.|
T Consensus 153 -~v~giK~s~~d--~~~~~~l~~----~~~~--~--~~v~~G~d~-----~~~~~~~~G~~G~---i~~----~~~~~P~ 209 (285)
T TIGR00674 153 -NIVAIKEATGN--LERISEIKA----IAPD--D--FVVLSGDDA-----LTLPMMALGGKGV---ISV----TANVAPK 209 (285)
T ss_pred -CEEEEEeCCCC--HHHHHHHHH----hcCC--C--eEEEECchH-----HHHHHHHcCCCEE---Eeh----HHHhhHH
Confidence 68999999884 344554443 3332 1 333332331 2356788898655 333 3466566
Q ss_pred HHHHHHHh
Q 013498 328 EVVMAFKC 335 (442)
Q Consensus 328 evv~~L~~ 335 (442)
.++...+.
T Consensus 210 ~~~~l~~a 217 (285)
T TIGR00674 210 LMKEMVNN 217 (285)
T ss_pred HHHHHHHH
Confidence 65554443
No 162
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=94.32 E-value=3 Score=37.85 Aligned_cols=150 Identities=19% Similarity=0.115 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHhHcC-----CCEEEEc--cCCCChhH--HHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 96 ATLTSKEKLDIARQLAKLG-----VDIIEAG--FPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~G-----V~~IEvG--~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
...+.++..+.++.+.+.| ++.+-++ -|...+.+ .+.++.+.+..... . . ..+...+....-+ +
T Consensus 28 ~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~tn~~~~~-~ 100 (216)
T smart00729 28 RSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLA-D---D--VEITIETRPGTLT-E 100 (216)
T ss_pred hHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCC-C---C--eEEEEEeCcccCC-H
Confidence 3456788888888886555 3445443 34444433 44666665543210 0 0 1122222211111 1
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCeEEEccCC-CCCCCHHHHHHHHHHHH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPED-AGRSDRKFLYEILGEVI 244 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G-~~~V~f~~ed-asr~d~~~l~~~~~~~~ 244 (442)
..++.++..|.+.+.+.+-..+.+....++.. ...+.+.+.++.+++.| .. |.+.+.- ....+.+.+.++++.+.
T Consensus 101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~-v~~~~~~g~~~~~~~~~~~~~~~~~ 177 (216)
T smart00729 101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIK-VSTDLIVGLPGETEEDFEETLKLLK 177 (216)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcc-eEEeEEecCCCCCHHHHHHHHHHHH
Confidence 23444556688888887765555554444432 23477788899999999 64 5544322 23457889999999999
Q ss_pred HcCCcEEeccC
Q 013498 245 KVGATTLNIPD 255 (442)
Q Consensus 245 ~~Gad~I~laD 255 (442)
+.|++.|.+-.
T Consensus 178 ~~~~~~i~~~~ 188 (216)
T smart00729 178 ELGPDRVSIFP 188 (216)
T ss_pred HcCCCeEEeee
Confidence 99999776643
No 163
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=94.29 E-value=4.5 Score=40.00 Aligned_cols=167 Identities=22% Similarity=0.264 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-+.+..++.++.+.+.|.++|++|.-....++++.+..+.+.+.... . .| ++ .--.+.+-++.+++..+ |.
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~----~-~p-ls-IDT~~~~v~eaaL~~~~--G~ 92 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV----D-VP-LC-IDSPNPAAIEAGLKVAK--GP 92 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC----C-CC-EE-EeCCCHHHHHHHHHhCC--CC
Confidence 35667888999999999999999975433455665555554432110 1 23 21 12235556677776532 66
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CC-CCC----HHHHHHHHHHHHHcCCc--
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AG-RSD----RKFLYEILGEVIKVGAT-- 249 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-as-r~d----~~~l~~~~~~~~~~Gad-- 249 (442)
+.|+ ++|-. . +...++++.+++.|+. +..-+.+ .+ -.+ .+++.+.++.+.++|++
T Consensus 93 ~iIN---sIs~~--------~-----~~~~~~~~l~~~~g~~-vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~ 155 (261)
T PRK07535 93 PLIN---SVSAE--------G-----EKLEVVLPLVKKYNAP-VVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPE 155 (261)
T ss_pred CEEE---eCCCC--------C-----ccCHHHHHHHHHhCCC-EEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHh
Confidence 6554 33310 0 1122456667788886 4432222 11 111 36777888889999984
Q ss_pred EEeccCc-ccc--cC---HHHHHHHHHHHHHhCCCCcceeEEEeecC-Ccch
Q 013498 250 TLNIPDT-VGI--TM---PTEFGKLIADIKANTPGIENVVISTHCQN-DLGL 294 (442)
Q Consensus 250 ~I~laDT-~G~--~~---P~~v~~li~~l~~~~p~~~~v~i~~H~HN-DlGL 294 (442)
.|.| |. +|. .. ..++-+.++.+++.+|+ .++.+=.+| .+|+
T Consensus 156 ~Iil-DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg---~p~l~G~Sn~Sfgl 203 (261)
T PRK07535 156 DIYI-DPLVLPLSAAQDAGPEVLETIRRIKELYPK---VHTTCGLSNISFGL 203 (261)
T ss_pred HEEE-eCCCCcccCChHHHHHHHHHHHHHHHhCCC---CCEEEEeCCCccCC
Confidence 5555 43 341 22 33345666777777764 344443333 3444
No 164
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.16 E-value=1.5 Score=44.15 Aligned_cols=215 Identities=16% Similarity=0.210 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccch-hhHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~e 170 (442)
++.+.-.++++.|.+.|++.|=+ | +|.-+.+|.. .++...+..+ +.+|.|+|.+-.+. +-|+.+-.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-------grvpviaG~g~~~t~eai~lak~ 94 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-------GRVPVIAGVGSNSTAEAIELAKH 94 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-------CCCcEEEecCCCcHHHHHHHHHH
Confidence 77888999999999999997755 4 4556666654 4455555432 34678888775544 44555433
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
.+..|++.+-+..|-. .+-+.++..+-.+..++.+ ++. -+-++.+. |+-.+...+.+.++.+ -...
T Consensus 95 -a~~~Gad~il~v~PyY-------~k~~~~gl~~hf~~ia~a~-~lP--vilYN~P~--~tg~~l~~e~i~~la~-~~ni 160 (299)
T COG0329 95 -AEKLGADGILVVPPYY-------NKPSQEGLYAHFKAIAEAV-DLP--VILYNIPS--RTGVDLSPETIARLAE-HPNI 160 (299)
T ss_pred -HHhcCCCEEEEeCCCC-------cCCChHHHHHHHHHHHHhc-CCC--EEEEeCcc--ccCCCCCHHHHHHHhc-CCCE
Confidence 3567999887665542 2446677777777666665 443 35666643 3333334445555555 6789
Q ss_pred EeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHH
Q 013498 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV 330 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv 330 (442)
+.+.|+.|-+ .. +..+++..++. + -+.+=+.++ -.+.++..|++.. +. .++|...++.+
T Consensus 161 vgiKd~~gd~--~~----~~~~~~~~~~~-~-f~v~~G~d~------~~~~~~~~G~~G~---is----~~~N~~p~~~~ 219 (299)
T COG0329 161 VGVKDSSGDL--DR----LEEIIAALGDR-D-FIVLSGDDE------LALPALLLGADGV---IS----VTANVAPELAV 219 (299)
T ss_pred EEEEeCCcCH--HH----HHHHHHhcCcc-C-eeEEeCchH------HHHHHHhCCCCeE---Ee----cccccCHHHHH
Confidence 9999999932 22 23333333320 0 122223332 2344555777654 22 24677777776
Q ss_pred HHHHhccccccCCccCCCChhHHHHHHHHHHHH
Q 013498 331 MAFKCRGEHILGGLYTGINTRHIVMASKMVEEY 363 (442)
Q Consensus 331 ~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~~ 363 (442)
...+... .| |.+.-.++.+.+..+
T Consensus 220 ~l~~~~~--------~g-~~~~A~~l~~~l~~l 243 (299)
T COG0329 220 ELYRAAK--------AG-DIEEARELQDRLLPL 243 (299)
T ss_pred HHHHHHH--------cC-CHHHHHHHHHHHHHH
Confidence 6555431 23 555555555555444
No 165
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.14 E-value=5.3 Score=41.22 Aligned_cols=201 Identities=17% Similarity=0.192 Sum_probs=123.4
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEe--eecc
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSR 159 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r 159 (442)
++.+..+ ..++.++...+++.-.+.+.+.|=-.+|.... +. ...++.+++... -+|+.. .+++
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~--------~VPVaLHLDHg~ 86 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP--------DIPICLHQDHGN 86 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC--------CCcEEEECCCCC
Confidence 3444443 24788999999999999999987554553321 11 224444444310 134332 2232
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--Ec----cC-------
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FS----PE------- 226 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f~----~e------- 226 (442)
..+.+.+|+++ |...|.+= .|..- ..+...+.+|+++..++.+++|+..|.. |+ ++ .|
T Consensus 87 -~~e~i~~Ai~~----GFtSVMiD--gS~l~-~~~~~~~~eeNI~~Trevve~Ah~~Gvs-VEaELG~igg~e~~~~g~e 157 (347)
T PRK13399 87 -SPATCQSAIRS----GFTSVMMD--GSLLA-DGKTPASYDYNVDVTRRVTEMAHAVGVS-VEGELGCLGSLETGEAGEE 157 (347)
T ss_pred -CHHHHHHHHhc----CCCEEEEe--CCCCC-CCCCccCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeccCccccccccc
Confidence 45566666664 88876542 23110 0112335899999999999999999984 53 21 12
Q ss_pred C-----------CCCCCHHHHHHHHHHHHHcCCcEEecc--Cccccc----CHH---HHHHHHHHHHHhCCCCcceeEEE
Q 013498 227 D-----------AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT----MPT---EFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 227 d-----------asr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~----~P~---~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
| ...++|+...++++. -|+|.+-++ -.=|.. .|. -=.++++.|++.+++ +||.+
T Consensus 158 d~~~~~~~~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~---vPLVL 231 (347)
T PRK13399 158 DGVGAEGKLSHDQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPN---THLVM 231 (347)
T ss_pred CCccccccccccccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCC---CCEEE
Confidence 2 236788877666654 588865443 233444 243 235677888888853 78999
Q ss_pred eecCCc-------------------chHHHHHHHHHHhCCCEEEe
Q 013498 287 HCQNDL-------------------GLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 287 H~HNDl-------------------GLA~ANalaAl~aGa~~vd~ 312 (442)
|.=... |...-+-..|+..|+.-|+.
T Consensus 232 HGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi 276 (347)
T PRK13399 232 HGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNI 276 (347)
T ss_pred eCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEe
Confidence 986654 45577888999999988854
No 166
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=94.14 E-value=7.1 Score=39.23 Aligned_cols=182 Identities=19% Similarity=0.209 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEe--eecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=-..+.... +. ...++.+++.. -+|+.. .++. ..+.+.+|+
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~---------~VPValHLDHg~-~~e~i~~ai 94 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTY---------NMPLALHLDHHE-SLDDIRRKV 94 (286)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCC-CHHHHHHHH
Confidence 4688999999999999999987554443221 11 23444444432 134332 2222 455566666
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC--------CCCCHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKF 235 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda--------sr~d~~~ 235 (442)
++ |...|.+ -.| ..+.+|+++..++.+++|+..|.. |+- +.||. ..+||+.
T Consensus 95 ~~----GFtSVM~--DgS--------~lp~eeNi~~T~evv~~Ah~~gv~-VEaElG~igg~ed~~~~~~~~~~~T~pee 159 (286)
T PRK12738 95 HA----GVRSAMI--DGS--------HFPFAENVKLVKSVVDFCHSQDCS-VEAELGRLGGVEDDMSVDAESAFLTDPQE 159 (286)
T ss_pred Hc----CCCeEee--cCC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEEeeCCccCCcccccchhcCCCHHH
Confidence 54 8877654 233 346789999999999999999984 532 22332 2678887
Q ss_pred HHHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 236 LYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
..++++ +-|+|.+-++ -.=|.. .|.--.++++.|++.++ +||.+|.=. |..--+-..|++.|+.-|+
T Consensus 160 a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~----vPLVLHGgS--G~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 160 AKRFVE---LTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD----VPLVLHGAS--DVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred HHHHHH---HhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC----CCEEEeCCC--CCCHHHHHHHHHcCCeEEE
Confidence 766654 4588865443 222333 46666788899988873 788877654 4557778889999998875
Q ss_pred e
Q 013498 312 V 312 (442)
Q Consensus 312 ~ 312 (442)
.
T Consensus 231 i 231 (286)
T PRK12738 231 V 231 (286)
T ss_pred e
Confidence 4
No 167
>PLN02428 lipoic acid synthase
Probab=94.12 E-value=2.1 Score=44.20 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCC---ChhHH----HHHHHHHHHhcccccccCCccceEeeecccchhhHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKEDF----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~---~~~d~----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (442)
.....++..++++.+.+.|++++-+-.... ....+ +.++.|.+..+. ..+..+..--..+ +..
T Consensus 128 ~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~---------i~Ie~L~pdf~~d-~el 197 (349)
T PLN02428 128 PPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPE---------ILVEALVPDFRGD-LGA 197 (349)
T ss_pred CCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCC---------cEEEEeCccccCC-HHH
Confidence 345678888999999999999876643321 11122 345555543211 1233332211112 345
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhC---CCHHHHHHHHHHHHHHHHHc--CCCeEEEccCCCCCCCHHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLR---KTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~---~s~~e~l~~~~~~v~~ar~~--G~~~V~f~~edasr~d~~~l~~~~~~~ 243 (442)
++.++.+|.+.+..-+-+++- +..+++ .+.++ ..+.++.+++. |+. +.-+++-+---+.+.+.++++.+
T Consensus 198 L~~L~eAG~d~i~hnlETv~r-L~~~Ir~~~~sye~----~Le~L~~ak~~~pGi~-tkSg~MvGLGET~Edv~e~l~~L 271 (349)
T PLN02428 198 VETVATSGLDVFAHNIETVER-LQRIVRDPRAGYKQ----SLDVLKHAKESKPGLL-TKTSIMLGLGETDEEVVQTMEDL 271 (349)
T ss_pred HHHHHHcCCCEEccCccCcHH-HHHHhcCCCCCHHH----HHHHHHHHHHhCCCCe-EEEeEEEecCCCHHHHHHHHHHH
Confidence 666777899998776666653 555565 35444 44677788888 774 32222222124568888999999
Q ss_pred HHcCCcEEec
Q 013498 244 IKVGATTLNI 253 (442)
Q Consensus 244 ~~~Gad~I~l 253 (442)
.+.|+|.+.|
T Consensus 272 relgvd~vti 281 (349)
T PLN02428 272 RAAGVDVVTF 281 (349)
T ss_pred HHcCCCEEee
Confidence 9999999866
No 168
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.58 Score=46.69 Aligned_cols=107 Identities=21% Similarity=0.188 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc-----------ccCHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEFG 266 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G-----------~~~P~~v~ 266 (442)
|.+|+++.+++.++. ..++ |.+..+ .+.-++..+.+.++.+.++|+..+.|-|.++ +..++++.
T Consensus 62 t~~e~~~~vrrI~~a---~~lP-v~vD~d-tGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v 136 (289)
T COG2513 62 TLDEVLADARRITDA---VDLP-VLVDID-TGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMV 136 (289)
T ss_pred cHHHHHHHHHHHHhh---cCCc-eEEecc-CCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHH
Confidence 577777766665443 3454 777774 4555589999999999999999999999998 36778888
Q ss_pred HHHHHHHHhCCCCcceeEE----EeecCCcchHHHHHHHHHHhCCCEE
Q 013498 267 KLIADIKANTPGIENVVIS----THCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 267 ~li~~l~~~~p~~~~v~i~----~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.|++.++.-++.+ ..|- ...+..+.-|+.-+.+-++||||.|
T Consensus 137 ~rIkAa~~a~~~~~-fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~i 183 (289)
T COG2513 137 DRIKAAVEARRDPD-FVIIARTDALLVEGLDDAIERAQAYVEAGADAI 183 (289)
T ss_pred HHHHHHHHhccCCC-eEEEeehHHHHhccHHHHHHHHHHHHHcCCcEE
Confidence 89998888765422 2222 2445557888889999999999998
No 169
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.08 E-value=4.3 Score=39.01 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=94.8
Q ss_pred HHHHHHHHHhHcCCCEEEEccC----CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 102 EKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p----~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
+=+++++.+.+.|++.+.+=-- ......++.++.+++... .|.+.+=+--..+|++.++++ |.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~---------~~l~v~GGi~~~~~~~~~~~~----Ga 99 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVG---------VPVQLGGGIRSAEDAASLLDL----GV 99 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHHcC---------CcEEEcCCcCCHHHHHHHHHc----CC
Confidence 4577888899999998866322 122345778888877532 133332222256778877764 88
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC--------CCCCCC-HHHHHHHHHHHHHcCC
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--------DAGRSD-RKFLYEILGEVIKVGA 248 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--------dasr~d-~~~l~~~~~~~~~~Ga 248 (442)
+.|++-.... .+ .+.+.+++ +..|.+.+.++.. .....+ .....++++.+.+.|+
T Consensus 100 ~~v~iGs~~~---------~~----~~~~~~i~---~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 100 DRVILGTAAV---------EN----PEIVRELS---EEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CEEEEChHHh---------hC----hHHHHHHH---HHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 8886522110 01 12222232 2233222322220 011110 1135577788889999
Q ss_pred cEEeccCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 249 TTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 249 d~I~laDT--~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.|.+-|+ .|...+. -.++++.+++.++ +|+-.-..=. ...+.....+.||+.|-+
T Consensus 164 ~~i~~~~~~~~g~~~g~-~~~~i~~i~~~~~----iPvia~GGI~---~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 164 GSILFTNVDVEGLLEGV-NTEPVKELVDSVD----IPVIASGGVT---TLDDLRALKEAGAAGVVV 221 (241)
T ss_pred CEEEEEeecCCCCcCCC-CHHHHHHHHHhCC----CCEEEeCCCC---CHHHHHHHHHcCCCEEEE
Confidence 99999776 5665553 3456777777663 4455443221 034455567788887643
No 170
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.06 E-value=7.1 Score=39.25 Aligned_cols=184 Identities=18% Similarity=0.172 Sum_probs=117.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----hH-HHHHHHHHHHhcccccccCCccceEe--eecccchhhHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTA 168 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a 168 (442)
.++.+....+.+.-.+.+.+.|=-.+|.... +. ...++.+++..+- -+|+.. .+++ +.++|.+|
T Consensus 25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~-------~VPV~lHLDHg~-~~e~i~~a 96 (288)
T TIGR00167 25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPY-------GVPVALHLDHGA-SEEDCAQA 96 (288)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccC-------CCcEEEECCCCC-CHHHHHHH
Confidence 4678999999999999999987554553222 11 2244444443200 134332 2232 45667777
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCC--------CCCCCHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPED--------AGRSDRK 234 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~ed--------asr~d~~ 234 (442)
+++ |...|.+ -.| ..+.+|+++..++.+++|+..|+. |+- +-|| ...++|+
T Consensus 97 i~~----GftSVMi--DgS--------~lp~eeNi~~T~~vv~~Ah~~gv~-VEaElG~vgg~e~~~~~~~~~~~~T~pe 161 (288)
T TIGR00167 97 VKA----GFSSVMI--DGS--------HEPFEENIELTKKVVERAHKMGVS-VEAELGTLGGEEDGVSVADESALYTDPE 161 (288)
T ss_pred HHc----CCCEEEe--cCC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCcccccccccCCCHH
Confidence 765 8887654 233 246789999999999999999984 532 1232 2267888
Q ss_pred HHHHHHHHHHHcCCcEEecc--Cccccc--CHH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCE
Q 013498 235 FLYEILGEVIKVGATTLNIP--DTVGIT--MPT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~la--DT~G~~--~P~-~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~ 309 (442)
...+++ .+-|+|.+-++ -.=|.- .|. -=.++++.|++.++ +||.+|+=. |+.-.+-..|+..|+.-
T Consensus 162 ea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~----vPLVlHGgS--G~~~e~~~~ai~~Gi~K 232 (288)
T TIGR00167 162 EAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN----LPLVLHGGS--GIPDEEIKKAISLGVVK 232 (288)
T ss_pred HHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC----CCEEEeCCC--CCCHHHHHHHHHcCCeE
Confidence 665554 45688865554 233443 355 34567888888773 778877654 67777888899999888
Q ss_pred EEe
Q 013498 310 VEV 312 (442)
Q Consensus 310 vd~ 312 (442)
|+.
T Consensus 233 iNi 235 (288)
T TIGR00167 233 VNI 235 (288)
T ss_pred EEc
Confidence 753
No 171
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.02 E-value=6.4 Score=40.19 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCC---ChhH-----HHHHHHHHHHhcccccccCCccceEe--eecccchhhHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAA---SKED-----FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIK 166 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~---~~~d-----~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~ 166 (442)
..+.+....+++.-.+.+-+.|=-.+|.. .+.+ ...++.+++...- .+|... .++. ..+.+.
T Consensus 31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~-------~VPV~lHLDHg~-~~e~i~ 102 (321)
T PRK07084 31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGC-------PIPIVLHLDHGD-SFELCK 102 (321)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCC-------CCcEEEECCCCC-CHHHHH
Confidence 46789999999999999999764434422 1111 1222333332110 134332 2222 455566
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--E----ccCCC------CCCCHH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--F----SPEDA------GRSDRK 234 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f----~~eda------sr~d~~ 234 (442)
+++++ |...|.+ -.| ..+.+|+++..++.+++|+..|.. |+ + +.||. ..+||+
T Consensus 103 ~ai~~----GftSVMi--D~S--------~lp~eeNI~~T~evv~~Ah~~Gvs-VEaElG~igg~ed~~~~~~~~~T~pe 167 (321)
T PRK07084 103 DCIDS----GFSSVMI--DGS--------HLPYEENVALTKKVVEYAHQFDVT-VEGELGVLAGVEDEVSAEHHTYTQPE 167 (321)
T ss_pred HHHHc----CCCEEEe--eCC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCccCcccccCCHH
Confidence 66654 8887654 233 247889999999999999999984 53 2 22332 267888
Q ss_pred HHHHHHHHHHHcCCcEEecc--Cccccc-------CHHHHHHHHHHHHHhCCCCcceeEEEeecCC--------------
Q 013498 235 FLYEILGEVIKVGATTLNIP--DTVGIT-------MPTEFGKLIADIKANTPGIENVVISTHCQND-------------- 291 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~la--DT~G~~-------~P~~v~~li~~l~~~~p~~~~v~i~~H~HND-------------- 291 (442)
...++++. -|+|.+-++ -.=|.. .|.-=.++++.|++.+++ +||.+|.=..
T Consensus 168 eA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~---vPLVLHGgSg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 168 EVEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPG---FPIVLHGSSSVPQEYVKTINEYGG 241 (321)
T ss_pred HHHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCC---CCEEEeCCCCCcHHHHHHHHHhcC
Confidence 77776654 588865444 333544 344456788899988853 7899998663
Q ss_pred -----cchHHHHHHHHHHhCCCEEEe
Q 013498 292 -----LGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 292 -----lGLA~ANalaAl~aGa~~vd~ 312 (442)
.|....+-..|+..|+.-|+.
T Consensus 242 ~~~~~~Gi~~e~~~kai~~GI~KINi 267 (321)
T PRK07084 242 KLKDAIGIPEEQLRKAAKSAVCKINI 267 (321)
T ss_pred ccccCCCCCHHHHHHHHHcCCceecc
Confidence 378888888999999888854
No 172
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=93.92 E-value=0.72 Score=45.49 Aligned_cols=165 Identities=21% Similarity=0.342 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEc--cCCCChhHH-----HHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAG--FPAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG--~p~~~~~d~-----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
+.|+...+|+.+.++|.+.+--| .|..||.+| +.++.+.+.... .++ |.++ .-.+.+|++.+.+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~-----~Gl-~vvt--Evm~~~~~e~~~~y 128 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADE-----TGL-PVVT--EVMDVRDVEAAAEY 128 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccCCcCCCCCCcccccccCHHHHHHHHHHHHH-----cCC-eeEE--EecCHHHHHHHHhh
Confidence 67999999999999999999888 488888664 345444433211 133 2222 12367788776542
Q ss_pred --HHhCCCCEEEEeecCC-------hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCCCCCC----
Q 013498 172 --VKYAKRPRIHTFIATS-------GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDAGRSD---- 232 (442)
Q Consensus 172 --l~~~g~~~v~i~~~~S-------d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~edasr~d---- 232 (442)
+...|.....-|.=.. ++-+++-+.-|.+| ...+++|+-+.|...|.. +.|-.+|..
T Consensus 129 ~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieE----wL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~ 204 (286)
T COG2876 129 ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEE----WLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDIS 204 (286)
T ss_pred hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHH----HHHHHHHHHhCCCCcEEEEecccccccccccceechH
Confidence 1112222221110000 01111222334444 456889999998653322 123333321
Q ss_pred -----------------------HHHHHHHHHHHHHcCCcEE----------eccCcccccCHHHHHHHHHHHHHh
Q 013498 233 -----------------------RKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 233 -----------------------~~~l~~~~~~~~~~Gad~I----------~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
.+++..+++++..+|||.+ .|+|.-=.++|+++.+++..++..
T Consensus 205 aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~ 280 (286)
T COG2876 205 AVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRAL 280 (286)
T ss_pred HHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 2688889999999999965 478999999999999999998863
No 173
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.81 E-value=7.9 Score=39.92 Aligned_cols=193 Identities=18% Similarity=0.174 Sum_probs=119.3
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEe--eecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=-.+|.... +. ...++.+++... -+|... .+++ ..+.+.+|+
T Consensus 23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~--------~VPValHLDHg~-~~e~i~~Ai 93 (347)
T TIGR01521 23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYP--------HIPVVMHQDHGN-SPATCQRAI 93 (347)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCC--------CCcEEEECCCCC-CHHHHHHHH
Confidence 4788999999999999999987655554321 11 234455554321 134332 2232 456666666
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--c----cC-------C---------
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--S----PE-------D--------- 227 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~----~e-------d--------- 227 (442)
++ |...|.+ -.|... ..+...+.+|+++..++.+++|+..|.. |+- + .| |
T Consensus 94 ~~----GFtSVMi--DgS~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gvs-VEaELG~igg~e~~~~g~~d~~~~~~~~~ 165 (347)
T TIGR01521 94 QL----GFTSVMM--DGSLRE-DAKTPADYDYNVRVTAEVVAFAHAVGAS-VEGELGCLGSLETGMGEAEDGHGFEGVLD 165 (347)
T ss_pred Hc----CCCEEee--cCcCCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeecccccccccccccCcccccccc
Confidence 64 8887654 233110 1223457899999999999999999984 531 1 22 2
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCcEEecc--CcccccC----HH---HHHHHHHHHHHhCCCCcceeEEEeecCCcc---
Q 013498 228 --AGRSDRKFLYEILGEVIKVGATTLNIP--DTVGITM----PT---EFGKLIADIKANTPGIENVVISTHCQNDLG--- 293 (442)
Q Consensus 228 --asr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~~----P~---~v~~li~~l~~~~p~~~~v~i~~H~HNDlG--- 293 (442)
...++|+...++++ +-|+|.+-++ -.=|... |. -=.++++.|++.++ ++||.+|.=....
T Consensus 166 ~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~---~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 166 HSQLLTDPEEAADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP---DTHLVMHGSSSVPQEW 239 (347)
T ss_pred hhhcCCCHHHHHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC---CCCEEEeCCCCCchHh
Confidence 22567776666554 4588865443 2335442 42 22456788888875 3789988766533
Q ss_pred ----------------hHHHHHHHHHHhCCCEEEe
Q 013498 294 ----------------LSTANTIAGACAGARQVEV 312 (442)
Q Consensus 294 ----------------LA~ANalaAl~aGa~~vd~ 312 (442)
.-...-..|++.|+.-|+.
T Consensus 240 ~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi 274 (347)
T TIGR01521 240 LDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNI 274 (347)
T ss_pred hHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEe
Confidence 4467778888999888854
No 174
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.81 E-value=0.26 Score=46.35 Aligned_cols=71 Identities=18% Similarity=0.302 Sum_probs=52.2
Q ss_pred HHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccc
Q 013498 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 317 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~Gl 317 (442)
+-++.+.++|+|.|.| |-+....|..+.++|..+++++ ..+-.-|-+ +.+++.|.++|+|.|-+|+.|.
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-----~l~MADist-----~ee~~~A~~~G~D~I~TTLsGY 123 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-----QLVMADIST-----LEEAINAAELGFDIIGTTLSGY 123 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-----SEEEEE-SS-----HHHHHHHHHTT-SEEE-TTTTS
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-----cEEeeecCC-----HHHHHHHHHcCCCEEEcccccC
Confidence 3456777899999998 8889999999999999999986 234444433 7899999999999999999997
Q ss_pred cc
Q 013498 318 GE 319 (442)
Q Consensus 318 Ge 319 (442)
=+
T Consensus 124 T~ 125 (192)
T PF04131_consen 124 TP 125 (192)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 175
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=93.78 E-value=2.4 Score=40.47 Aligned_cols=173 Identities=18% Similarity=0.249 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhHcCCCEEEEcc----CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 100 SKEKLDIARQLAKLGVDIIEAGF----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 100 ~e~kl~ia~~L~~~GV~~IEvG~----p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
..+-+++++.+.+.|++.+-+-- ....+..++.++.+.+... .|.+.+-.-...++++..++ .
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GgI~~~e~~~~~~~----~ 94 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG---------IPVQVGGGIRSLEDIERLLD----L 94 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC---------CCEEEeCCcCCHHHHHHHHH----c
Confidence 34678899999999999888731 1123445778888877532 23333322224566766665 4
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--CC------CC-CCCHHHHHHHHHHHHHc
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--ED------AG-RSDRKFLYEILGEVIKV 246 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--ed------as-r~d~~~l~~~~~~~~~~ 246 (442)
|.+.|.+ ....+ .+ .+.+.++ ++..|.+.+.++. .. .. ......+.++++.+.+.
T Consensus 95 Gad~vvi--gs~~l-------~d----p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 95 GVSRVII--GTAAV-------KN----PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred CCCEEEE--CchHH-------hC----hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 8887643 22211 01 1222233 3334432233322 10 00 01123455788889999
Q ss_pred CCcEEeccCc--ccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHH-HHHHHHhCCCEE
Q 013498 247 GATTLNIPDT--VGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTAN-TIAGACAGARQV 310 (442)
Q Consensus 247 Gad~I~laDT--~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~AN-alaAl~aGa~~v 310 (442)
|++.|.+-|. .|.... .-.++++.+++.++ +|+-.-. |....+ ...+++.||+.|
T Consensus 159 ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~----ipvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 159 GVKAIIYTDISRDGTLSG-PNFELYKELAAATG----IPVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCCEEEEEeecCCCccCC-CCHHHHHHHHHhcC----CCEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 9999888765 555544 33567888887653 4454432 222222 334555677765
No 176
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=93.76 E-value=8.1 Score=38.60 Aligned_cols=183 Identities=19% Similarity=0.150 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC---h-hH-HHHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---K-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~-~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (442)
.++.+....+++.-.+.+.+.|=--+|... + +. ...++.+++.. .+|...-+=-+ ..++|.+|++
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~---------~VPV~lHLDH~~~~~~i~~ai~ 90 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA---------SVPVALHLDHGSSFELIKRAIR 90 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 467889999999999999997643344321 1 11 23444444432 23433222222 4567777766
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC------CCCCHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------GRSDRKFLYE 238 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda------sr~d~~~l~~ 238 (442)
+ |...|.+ -.| ..+.+|+++..++.+++|+..|.. |+- +-++. ..++|+...+
T Consensus 91 ~----GftSVMi--D~S--------~l~~eeNi~~t~~vv~~ah~~gv~-VEaElG~i~g~e~~~~~~~~~~T~pe~a~~ 155 (276)
T cd00947 91 A----GFSSVMI--DGS--------HLPFEENVAKTKEVVELAHAYGVS-VEAELGRIGGEEDGVVGDEGLLTDPEEAEE 155 (276)
T ss_pred h----CCCEEEe--CCC--------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEEeeecCccCCcccccccCCCHHHHHH
Confidence 5 8877654 233 246789999999999999999984 532 12322 3678887777
Q ss_pred HHHHHHHcCCcEEecc--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 239 ILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 239 ~~~~~~~~Gad~I~la--DT~G~~---~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+++. -|+|.+-++ -.=|.- .|.-=.++++.+++.++ +|+.+|.= -|+.--+-..|++.|+.-|+.
T Consensus 156 Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~----vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 156 FVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN----VPLVLHGG--SGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred HHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC----CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 6654 588865443 233443 56666778888988873 77887664 467777788899999988864
No 177
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=93.76 E-value=3.4 Score=40.42 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=105.8
Q ss_pred HHHHHHHHHhHcCCCEEEEccC----CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 102 EKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p----~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
+-+++++.+.+.|++.|=+--- ...+.+++.++.+++... .|.+.+=+-...+|++..++. |+
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~---------~pv~~~GGi~s~~d~~~~~~~----Ga 97 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAETVF---------IPLTVGGGIKSIEDVDKLLRA----GA 97 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHhcC---------CCEEEECCCCCHHHHHHHHHc----CC
Confidence 5678899999999998776421 123446788888887632 244443333467888877664 77
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC--CC---------------CCCCHHHHHHHH
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--DA---------------GRSDRKFLYEIL 240 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--da---------------sr~d~~~l~~~~ 240 (442)
+.|.+ .++- -+..+.+.++.+. .|-+.+.++.. +. .......+.+++
T Consensus 98 ~~viv--gt~~-----------~~~p~~~~~~~~~---~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~ 161 (254)
T TIGR00735 98 DKVSI--NTAA-----------VKNPELIYELADR---FGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWA 161 (254)
T ss_pred CEEEE--ChhH-----------hhChHHHHHHHHH---cCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHH
Confidence 77644 2211 0112223333332 34223444331 11 011234567888
Q ss_pred HHHHHcCCcEEec--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH-HHHHHHHhC-CCEE-Eeccc
Q 013498 241 GEVIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACAG-ARQV-EVTIN 315 (442)
Q Consensus 241 ~~~~~~Gad~I~l--aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A-NalaAl~aG-a~~v-d~Tv~ 315 (442)
+.+.+.|++.|.+ -|..|.+.... .++++.+++..+ +||-... |.... -...++..| |+.| -++..
T Consensus 162 ~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~----ipvia~G----Gi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 162 KEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK----IPVIASG----GAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC----CCEEEeC----CCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 8999999999988 55555544433 457777877753 4555443 11122 223445555 6664 22222
Q ss_pred ccccccCcccHHHHHHHHHhc
Q 013498 316 GIGERAGNASLEEVVMAFKCR 336 (442)
Q Consensus 316 GlGeraGNa~lEevv~~L~~~ 336 (442)
-.|..+++++...|+..
T Consensus 233 ----~~~~~~~~~~~~~~~~~ 249 (254)
T TIGR00735 233 ----HYREITIGEVKEYLAER 249 (254)
T ss_pred ----hCCCCCHHHHHHHHHHC
Confidence 12445677776666654
No 178
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=93.68 E-value=3.8 Score=43.62 Aligned_cols=170 Identities=18% Similarity=0.209 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHhHc--CCCEEEE---ccCCCChh-HHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKL--GVDIIEA---GFPAASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~--GV~~IEv---G~p~~~~~-d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (442)
..+|++|.++.++.+.+. ++..|=+ |=|-..++ .++.++.+.+..+. +...|..-+-...+.+
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~-------i~i~lsTNG~~l~e~i---- 126 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPD-------VKLCLSTNGLMLPEHV---- 126 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCC-------CeEEEECCCCCCHHHH----
Confidence 458999999999988754 4555444 23545443 46777777665221 1112221111123333
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHh------------CCCHHH-HHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKL------------RKTKQQ-VVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l------------~~s~~e-~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
+.+...|++.|.+.+-..+.....++ +.+... .+++..+.++++.+.|.. |.+...-....+.+.+
T Consensus 127 ~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~-v~v~~vlIpGiND~~i 205 (442)
T TIGR01290 127 DRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGIL-VKVNSVLIPGINDEHL 205 (442)
T ss_pred HHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCe-EEEEEEeeCCcCHHHH
Confidence 34455688988887665543333221 222222 367778889999999985 5443221222333889
Q ss_pred HHHHHHHHHcCCcEEec------c--Ccc------cccCHHHHHHHHHHHHHhCC
Q 013498 237 YEILGEVIKVGATTLNI------P--DTV------GITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~l------a--DT~------G~~~P~~v~~li~~l~~~~p 277 (442)
.++++.+.+.|++.+.| + ++. -..+++++.++-+.+.+.++
T Consensus 206 ~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~ 260 (442)
T TIGR01290 206 VEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP 260 (442)
T ss_pred HHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence 99999999999876655 2 211 12355666666666665544
No 179
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=93.64 E-value=4.3 Score=39.55 Aligned_cols=204 Identities=14% Similarity=0.117 Sum_probs=106.3
Q ss_pred HHHHHHhHcCCCEEEEc--cCC------CChhHHHHHHHHHHHhcccccccCCccceEeeecccch-------hhHHHHH
Q 013498 105 DIARQLAKLGVDIIEAG--FPA------ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-------RDIKTAW 169 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG--~p~------~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-------~dI~~a~ 169 (442)
..++.+.++|++.+|+- .|. .++++.+.++.+.+..+-.+. ...|...-++..++ +.+++++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~nl~s~d~~~r~~~~~~l~~~i 90 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVS---VHAPYLINLASPDKEKVEKSIERLIDEI 90 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEE---EECCceecCCCCCHHHHHHHHHHHHHHH
Confidence 45677788899999993 121 233445666665554221110 00011011111111 1244456
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC------CCCHHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG------RSDRKFLYEILGEV 243 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas------r~d~~~l~~~~~~~ 243 (442)
+.....|.+.|.+..+.. ...++++.++++.+.++.+.+... .|.+.+|... -.+++.+.++++.+
T Consensus 91 ~~A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~-gv~l~lEn~~~~~~~~~~~~~~~~~ll~~v 162 (273)
T smart00518 91 KRCEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETK-GVVILLETTAGKGSQIGSTFEDLKEIIDLI 162 (273)
T ss_pred HHHHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccC-CcEEEEeccCCCCCccCCCHHHHHHHHHhc
Confidence 666667888777644321 123556667766666665544322 1444444221 13567777777655
Q ss_pred HHcCCcEEecc-Ccc-----cc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccc
Q 013498 244 IKVGATTLNIP-DTV-----GI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315 (442)
Q Consensus 244 ~~~Gad~I~la-DT~-----G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~ 315 (442)
... +.+.++ |+. |. ..|+.+.++++.+.+.++. +-...+|.||..|.. ..+.+ -+.
T Consensus 163 ~~~--~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~--~~I~~vHl~D~~~~~--------g~~~d-~H~--- 226 (273)
T smart00518 163 KEL--DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGL--EYLKAIHLNDSKIEL--------GSGKD-RHE--- 226 (273)
T ss_pred CCC--CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCH--HhhceEEeecCCCcc--------CCCCc-ccc---
Confidence 321 223332 443 21 2477888888877665531 135789999987620 00111 122
Q ss_pred ccccccCcccHHHHHHHHHhcc
Q 013498 316 GIGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 316 GlGeraGNa~lEevv~~L~~~g 337 (442)
.+|+ |+.+.+.+...|...+
T Consensus 227 ~~G~--G~id~~~~~~~l~~~~ 246 (273)
T smart00518 227 NLGE--GYIGFEPFRLLMADKR 246 (273)
T ss_pred CCCC--CCCChHHHHHHhhChh
Confidence 3343 8899999888877653
No 180
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=93.62 E-value=0.58 Score=46.13 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHcCCcEEecc------CcccccCHHH---HHHHHHHHHHhCCCCcceeEEEeecCCcchHH
Q 013498 227 DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTE---FGKLIADIKANTPGIENVVISTHCQNDLGLST 296 (442)
Q Consensus 227 dasr-~d~~~l~~~~~~~~~~Gad~I~la------DT~G~~~P~~---v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ 296 (442)
|.++ .+++.+.+.++...+.||+.|-+. +...+...++ +..+++.+++.+ +++|++|+++--
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~----~~plsiDT~~~~---- 86 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP----DVPISVDTYRAE---- 86 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEeCCCHH----
Confidence 5666 478999999999999999999884 2112222224 555556666655 378999999943
Q ss_pred HHHHHHHHhCCCEEEec
Q 013498 297 ANTIAGACAGARQVEVT 313 (442)
Q Consensus 297 ANalaAl~aGa~~vd~T 313 (442)
-..+|+++|++.|+-.
T Consensus 87 -vi~~al~~G~~iINsi 102 (257)
T TIGR01496 87 -VARAALEAGADIINDV 102 (257)
T ss_pred -HHHHHHHcCCCEEEEC
Confidence 3467888999999765
No 181
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.53 E-value=4.6 Score=39.88 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc--CCCChh--------HHHHHHHHHHHhcccccccCCccceEeeecccchhhH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF--PAASKE--------DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI 165 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~--------d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI 165 (442)
..=+.++-+++|+.|.+.|+...-.+. |..++. ..+.++..++.. ++ +.++ .-....++
T Consensus 34 ~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~--------Gl-~~~t--~~~d~~~~ 102 (260)
T TIGR01361 34 SVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEH--------GL-PVVT--EVMDPRDV 102 (260)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHh--------CC-CEEE--eeCChhhH
Confidence 334788999999999999987554332 444431 233344443332 22 2222 12345566
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK 245 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~ 245 (442)
+.+.+. ++.+.| +..+... .++++++.+.|.. |.+.- ..-.+++.+...++.+.+
T Consensus 103 ~~l~~~-----~d~lkI--~s~~~~n---------------~~LL~~~a~~gkP-Vilk~--G~~~t~~e~~~Ave~i~~ 157 (260)
T TIGR01361 103 EIVAEY-----ADILQI--GARNMQN---------------FELLKEVGKQGKP-VLLKR--GMGNTIEEWLYAAEYILS 157 (260)
T ss_pred HHHHhh-----CCEEEE--CcccccC---------------HHHHHHHhcCCCc-EEEeC--CCCCCHHHHHHHHHHHHH
Confidence 655442 455444 3322111 1366677778875 77643 223478889999999999
Q ss_pred cCCcEEeccCc-c-cc-cCHHHH--HHHHHHHHHhCCCCcceeEEE-eec--CCcchHHHHHHHHHHhCCC--EEEeccc
Q 013498 246 VGATTLNIPDT-V-GI-TMPTEF--GKLIADIKANTPGIENVVIST-HCQ--NDLGLSTANTIAGACAGAR--QVEVTIN 315 (442)
Q Consensus 246 ~Gad~I~laDT-~-G~-~~P~~v--~~li~~l~~~~p~~~~v~i~~-H~H--NDlGLA~ANalaAl~aGa~--~vd~Tv~ 315 (442)
.|.+.|.|+.. + .+ -.|... -+.+..+++.++ +||++ =.| .+.-+...-+++|+..||+ .|+.-+.
T Consensus 158 ~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~----~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 158 SGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH----LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred cCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC----CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 99988888885 2 32 222222 344566776653 56777 445 3333456678899999999 5765444
No 182
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.52 E-value=7.8 Score=38.66 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=51.1
Q ss_pred cchhhHHHHHHHHHhC--CCCEEEEeecCChH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHH
Q 013498 160 CNERDIKTAWEAVKYA--KRPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKF 235 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~--g~~~v~i~~~~Sd~-h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~ 235 (442)
.+.+++..+.+.+..+ +.+.|.+-+++... ..-..++.+. +.+.+.++.+|+. ++. |.+-+ +.+.+.
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~----~~~~eiv~~vr~~~~~p-v~vKi----~~~~~~ 170 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDP----ELSADVVKAVKDKTDVP-VFAKL----SPNVTD 170 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCH----HHHHHHHHHHHHhcCCC-EEEEC----CCChhh
Confidence 4677777777766654 36777665443221 0011122333 3344555555554 443 44433 124456
Q ss_pred HHHHHHHHHHcCCcEEeccCcc
Q 013498 236 LYEILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT~ 257 (442)
..++++.+.++|+|.|.+..|+
T Consensus 171 ~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 171 ITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred HHHHHHHHHHcCCCEEEEEccC
Confidence 7889999999999999987655
No 183
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.50 E-value=1.6 Score=41.45 Aligned_cols=172 Identities=20% Similarity=0.179 Sum_probs=89.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccc-hhhHHHHHHHHHhCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCN-ERDIKTAWEAVKYAK 176 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~-~~dI~~a~e~l~~~g 176 (442)
.+.++.+++++.+... ++.||+|.|-....-.+.++.+.+.. . .+...-... .+..+...+....+|
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~~G~~~v~~ir~~~-~----------i~~D~k~~di~~~~~~~~~~~~~~g 80 (215)
T PRK13813 13 TDRERALKIAEELDDY-VDAIKVGWPLVLASGLGIIEELKRYA-P----------VIADLKVADIPNTNRLICEAVFEAG 80 (215)
T ss_pred CCHHHHHHHHHhcccc-CCEEEEcHHHHHhhCHHHHHHHHhcC-C----------EEEEeeccccHHHHHHHHHHHHhCC
Confidence 3567778888777554 68999998643222235666665431 1 111000010 111112223334468
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--ccCCCC-CCC-HHHHHHHHHHHHHcCCcEEe
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAG-RSD-RKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~edas-r~d-~~~l~~~~~~~~~~Gad~I~ 252 (442)
.+.|.+...... +.+.++++++++.|.. +.+ .+.... ..+ .+++..++....+.|.+...
T Consensus 81 ad~vtvh~e~g~---------------~~l~~~i~~~~~~g~~-~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 81 AWGIIVHGFTGR---------------DSLKAVVEAAAESGGK-VFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVV 144 (215)
T ss_pred CCEEEEcCcCCH---------------HHHHHHHHHHHhcCCe-EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence 888766543321 2345678888999985 433 332110 111 34677778888889987654
Q ss_pred ccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH--HHHHHHHhCCCEEEe
Q 013498 253 IPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA--NTIAGACAGARQVEV 312 (442)
Q Consensus 253 laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A--NalaAl~aGa~~vd~ 312 (442)
+. . ...+.++.+++..+. ++.+ =|-|.... |.-.++++||+.+-.
T Consensus 145 ~~----~----~~~~~i~~l~~~~~~--~~~i-----vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 145 AP----A----TRPERVRYIRSRLGD--ELKI-----ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred EC----C----CcchhHHHHHHhcCC--CcEE-----EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 22 1 112344566665542 1111 12233332 477889999998733
No 184
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.49 E-value=8 Score=38.77 Aligned_cols=205 Identities=18% Similarity=0.168 Sum_probs=123.1
Q ss_pred HHHHhHcCCCEEEEcc---------CCC----ChhHHHHHHHHHHHhcccccccCCccceE----eeecccchhhHHHHH
Q 013498 107 ARQLAKLGVDIIEAGF---------PAA----SKEDFEAVRTIAKEVGNAVDAESGYVPVI----CGLSRCNERDIKTAW 169 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~---------p~~----~~~d~e~v~~l~~~~~~~~~~~~~l~~~i----~~~~r~~~~dI~~a~ 169 (442)
++.+.++|++.+=++. |-. .++-.+.+++|.+... .|.+ .||+. ...+.+.+
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~---------lPv~vD~dtGfG~--~~nvartV 99 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVD---------LPVLVDIDTGFGE--ALNVARTV 99 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcC---------CceEEeccCCCCc--HHHHHHHH
Confidence 6677888999887742 211 1122456666665431 1222 34553 44555666
Q ss_pred HHHHhCCCCEEEEeecCChHHHHH---HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC-CCCHHHHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEH---KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIK 245 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~---~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas-r~d~~~l~~~~~~~~~ 245 (442)
..+..+|+..+++-.-+.+-.+-+ +-=.+.++..++++.+++..++..+ |...=.|+- .--.+...+-++...+
T Consensus 100 ~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~f--vi~ARTda~~~~~ld~AI~Ra~AY~e 177 (289)
T COG2513 100 RELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDF--VIIARTDALLVEGLDDAIERAQAYVE 177 (289)
T ss_pred HHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCe--EEEeehHHHHhccHHHHHHHHHHHHH
Confidence 666667998888877666532221 2224778888888888777766332 211101110 1114566667778889
Q ss_pred cCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCccc
Q 013498 246 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNAS 325 (442)
Q Consensus 246 ~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~ 325 (442)
+|||.|+.. |...+++++++.+.++ +| +++-+--+-...+-..-.|+ ++|+++|-.... .=|+.|..
T Consensus 178 AGAD~if~~---al~~~e~i~~f~~av~--~p----l~~N~t~~g~tp~~~~~~L~--~~Gv~~V~~~~~--~~raa~~a 244 (289)
T COG2513 178 AGADAIFPE---ALTDLEEIRAFAEAVP--VP----LPANITEFGKTPLLTVAELA--ELGVKRVSYGLT--AFRAALKA 244 (289)
T ss_pred cCCcEEccc---cCCCHHHHHHHHHhcC--CC----eeeEeeccCCCCCcCHHHHH--hcCceEEEECcH--HHHHHHHH
Confidence 999999864 6667888888888776 44 33433333333444444444 568888843332 24889999
Q ss_pred HHHHHHHHHhcc
Q 013498 326 LEEVVMAFKCRG 337 (442)
Q Consensus 326 lEevv~~L~~~g 337 (442)
++.++..+...|
T Consensus 245 ~~~~~~~i~~~g 256 (289)
T COG2513 245 AEQAAREIRREG 256 (289)
T ss_pred HHHHHHHHHhcC
Confidence 999998888764
No 185
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=93.48 E-value=2.2 Score=41.23 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCcEEeccCccccc---CHHHHHHHHHHHHHhCCC--CcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 238 EILGEVIKVGATTLNIPDTVGIT---MPTEFGKLIADIKANTPG--IENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~---~P~~v~~li~~l~~~~p~--~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.-++.+.+.|||.|-+.=..|.+ ..+.+++-|+.+++..++ .-++.|+.-.=+|--+ ...+..++++||++|-+
T Consensus 81 ~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~A~~i~~~aGAdFVKT 159 (228)
T COG0274 81 AEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RKACEIAIEAGADFVKT 159 (228)
T ss_pred HHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HHHHHHHHHhCCCEEEc
Confidence 44667888999999887777764 467788888888888775 2257777777777777 67778899999999999
Q ss_pred cccccccccCcccHHHHHHHHHhcccc----ccCCccCCCChhHHHHHH
Q 013498 313 TINGIGERAGNASLEEVVMAFKCRGEH----ILGGLYTGINTRHIVMAS 357 (442)
Q Consensus 313 Tv~GlGeraGNa~lEevv~~L~~~g~~----~~~G~~tgidl~~L~~ls 357 (442)
|-+.- .|++.+|++..+.+..|.. .-.|+.+.-|...+.++.
T Consensus 160 STGf~---~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag 205 (228)
T COG0274 160 STGFS---AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG 205 (228)
T ss_pred CCCCC---CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh
Confidence 88654 7999999998877765422 223455544444444443
No 186
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.47 E-value=6.7 Score=36.71 Aligned_cols=156 Identities=16% Similarity=0.131 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~ 178 (442)
+.++-.++++.+.+.|++.||+-+- ++...+.++.+.+.... + .+-+-+-...++++.|+++ |.+
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k--~~~~~e~~~~~~~~~~~-~--------~~g~gtvl~~d~~~~A~~~----gAd 86 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWN--SDQPAELISQLREKLPE-C--------IIGTGTILTLEDLEEAIAA----GAQ 86 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCC--CCCHHHHHHHHHHhCCC-c--------EEeEEEEEcHHHHHHHHHc----CCC
Confidence 7889999999999999999999764 33344555555443211 0 0111111245788888775 888
Q ss_pred EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc
Q 013498 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG 258 (442)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G 258 (442)
.|++ |-.+ .+.++.++..+.. ...+ -.+++++ ..+.+.|+|.|.+--|.-
T Consensus 87 gv~~--p~~~------------------~~~~~~~~~~~~~-~i~G-----~~t~~e~----~~A~~~Gadyv~~Fpt~~ 136 (187)
T PRK07455 87 FCFT--PHVD------------------PELIEAAVAQDIP-IIPG-----ALTPTEI----VTAWQAGASCVKVFPVQA 136 (187)
T ss_pred EEEC--CCCC------------------HHHHHHHHHcCCC-EEcC-----cCCHHHH----HHHHHCCCCEEEECcCCc
Confidence 8764 2111 1344556667764 3333 2445544 344468999988744311
Q ss_pred ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 259 ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 259 ~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.. -.+.++.+++.+|+++=++++ |.-..|.-.-+++||+.|
T Consensus 137 ~~----G~~~l~~~~~~~~~ipvvaiG-------GI~~~n~~~~l~aGa~~v 177 (187)
T PRK07455 137 VG----GADYIKSLQGPLGHIPLIPTG-------GVTLENAQAFIQAGAIAV 177 (187)
T ss_pred cc----CHHHHHHHHhhCCCCcEEEeC-------CCCHHHHHHHHHCCCeEE
Confidence 11 135677777766643334443 677789999999999886
No 187
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.42 E-value=0.89 Score=43.50 Aligned_cols=154 Identities=23% Similarity=0.251 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec-ccchhhHHHHHHHHHhCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~e~l~~~g 176 (442)
-+.|+-+.+++.|.+.|++.||+.+ .+|.-.+.++.+++..++. +.|-+ -.+.++++.+.++ |
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl--~sp~a~e~I~~l~~~~p~~----------lIGAGTVL~~~q~~~a~~a----G 85 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITL--RTPAALEAIRALAKEFPEA----------LIGAGTVLNPEQARQAIAA----G 85 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEec--CCCCHHHHHHHHHHhCccc----------EEccccccCHHHHHHHHHc----C
Confidence 5789999999999999999999976 4677788999999876532 22222 2477888888765 7
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc--
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 254 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la-- 254 (442)
.+.+. .|.. + .+.+++|++.|+. +.=++ .++.++ ..+.++|++.+-|-
T Consensus 86 a~fiV--sP~~----------~--------~ev~~~a~~~~ip-~~PG~-----~TptEi----~~Ale~G~~~lK~FPa 135 (211)
T COG0800 86 AQFIV--SPGL----------N--------PEVAKAANRYGIP-YIPGV-----ATPTEI----MAALELGASALKFFPA 135 (211)
T ss_pred CCEEE--CCCC----------C--------HHHHHHHHhCCCc-ccCCC-----CCHHHH----HHHHHcChhheeecCc
Confidence 66543 1211 1 2578889999975 22222 333332 35668899887763
Q ss_pred CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 255 DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.++|- | .+++.+.--+|+ +. +=-+-|-...|.-.-+.+|+..+
T Consensus 136 ~~~Gg--~----~~~ka~~gP~~~---v~----~~pTGGVs~~N~~~yla~gv~av 178 (211)
T COG0800 136 EVVGG--P----AMLKALAGPFPQ---VR----FCPTGGVSLDNAADYLAAGVVAV 178 (211)
T ss_pred cccCc--H----HHHHHHcCCCCC---Ce----EeecCCCCHHHHHHHHhCCceEE
Confidence 33322 2 344444443443 23 33355667779989888885443
No 188
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.42 E-value=9.4 Score=38.29 Aligned_cols=192 Identities=17% Similarity=0.202 Sum_probs=121.8
Q ss_pred CcCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh----hH-HHHHHHHHHHhcccccccCCccceEee--ec
Q 013498 88 RDGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK----ED-FEAVRTIAKEVGNAVDAESGYVPVICG--LS 158 (442)
Q Consensus 88 RDG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~----~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~--~~ 158 (442)
|++.+..+ ..++.+....+++.-.+.+.+.|=--+|.... +. ...++.+++.. -+|+..= ++
T Consensus 14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~---------~VPValHLDH~ 84 (284)
T PRK12737 14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKY---------NIPLALHLDHH 84 (284)
T ss_pred HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHC---------CCCEEEECCCC
Confidence 34445444 24688999999999999999977544443221 11 12344444432 2343322 22
Q ss_pred ccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC----
Q 013498 159 RCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA---- 228 (442)
Q Consensus 159 r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda---- 228 (442)
+ ..+.+.+|+++ |...|.+ -.| ..+.+|+++..++.+++|+..|.. |+- +.|+.
T Consensus 85 ~-~~e~i~~ai~~----GftSVMi--DgS--------~lp~eeNi~~T~~vv~~Ah~~gvs-VEaElG~igg~e~~~~~~ 148 (284)
T PRK12737 85 E-DLDDIKKKVRA----GIRSVMI--DGS--------HLSFEENIAIVKEVVEFCHRYDAS-VEAELGRLGGQEDDLVVD 148 (284)
T ss_pred C-CHHHHHHHHHc----CCCeEEe--cCC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeeccCccCCcccc
Confidence 2 35666666664 8887643 233 247889999999999999999984 532 22332
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCcEEecc--Cccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 229 ----GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 229 ----sr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
..++|+...++++. -|+|.+-++ -.=|.. .|.-=.++++.|++.++ +||.+|. .-|+.--.-.
T Consensus 149 ~~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~----iPLVlHG--gSG~~~e~~~ 219 (284)
T PRK12737 149 EKDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS----IPLVLHG--ASGVPDEDVK 219 (284)
T ss_pred cccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC----CCEEEeC--CCCCCHHHHH
Confidence 26788877776654 588865554 222442 45445678888888763 6787665 4556677788
Q ss_pred HHHHhCCCEEEec
Q 013498 301 AGACAGARQVEVT 313 (442)
Q Consensus 301 aAl~aGa~~vd~T 313 (442)
.|++.|+.-|+..
T Consensus 220 kai~~Gi~KiNi~ 232 (284)
T PRK12737 220 KAISLGICKVNVA 232 (284)
T ss_pred HHHHCCCeEEEeC
Confidence 8999999888653
No 189
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.40 E-value=0.3 Score=52.34 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
+...+.++.+.+.|++.|.+ |+.- ..|..+.++|+.+++.+|+ +++-. +.++-...+..++++||+.|++.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~---~~vi~----g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLG---VPIVA----GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCC---CeEEE----eccCCHHHHHHHHHhCCCEEEEC
Confidence 35668888999999999888 8777 7889999999999999985 55555 66777888899999999999965
Q ss_pred cc
Q 013498 314 IN 315 (442)
Q Consensus 314 v~ 315 (442)
++
T Consensus 295 ~g 296 (475)
T TIGR01303 295 VG 296 (475)
T ss_pred Cc
Confidence 44
No 190
>PRK09234 fbiC FO synthase; Reviewed
Probab=93.37 E-value=6.9 Score=45.08 Aligned_cols=223 Identities=20% Similarity=0.098 Sum_probs=128.4
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEE--cc-CCCC-------------hhHHHHHHHHHHHhcccccccCCccceEeee
Q 013498 94 PGATLTSKEKLDIARQLAKLGVDIIEA--GF-PAAS-------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (442)
Q Consensus 94 ~g~~fs~e~kl~ia~~L~~~GV~~IEv--G~-p~~~-------------~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~ 157 (442)
....++.|+.++.++...+.|+..+-+ |- |... ..+++.+..+.+.+... .++.|.+..
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~----~gl~p~i~~- 172 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEE----TGLLPHLNP- 172 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHh----cCCCceeee-
Confidence 356799999999999999999998655 32 3211 11356666666554321 133444332
Q ss_pred cccchhhHHHHHHHHHhCCCCEEEEeecC-ChHHH-H----HHh--CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC
Q 013498 158 SRCNERDIKTAWEAVKYAKRPRIHTFIAT-SGIHM-E----HKL--RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG 229 (442)
Q Consensus 158 ~r~~~~dI~~a~e~l~~~g~~~v~i~~~~-Sd~h~-~----~~l--~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas 229 (442)
.-...++++.- +.+++. .++..-+ ++.+. + +.. +++.++ + .+.++.|+++|++ ++-++..+-
T Consensus 173 G~ls~~E~~~L----k~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~lGi~-~tsG~L~Gi 242 (843)
T PRK09234 173 GVMSWSELARL----KPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRLSVP-FTTGILIGI 242 (843)
T ss_pred CCCCHHHHHHH----HHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHcCCC-ccceEEEEC
Confidence 22345555433 333554 2333332 22221 1 110 223343 2 5789999999996 443333222
Q ss_pred CCCHHHHHHHHHHHHHc-----CCcEEec------cCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch
Q 013498 230 RSDRKFLYEILGEVIKV-----GATTLNI------PDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL 294 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~-----Gad~I~l------aDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL 294 (442)
--++++.++.+..+.+. |++.|.+ .+|- ...+|++.-+.|+..|-.+|+..++... -|..|.
T Consensus 243 GEt~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~~~Iqa~---~~l~g~ 319 (843)
T PRK09234 243 GETLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPKMRIQAP---PNLVSG 319 (843)
T ss_pred CCCHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceeeCc---cccCCH
Confidence 23445555666666655 4544332 3553 3588999999999888877642223322 255555
Q ss_pred HHHHHHHHHHhCCCEEEec--ccc--cc-cccCcccHHHHHHHHHhcc
Q 013498 295 STANTIAGACAGARQVEVT--ING--IG-ERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 295 A~ANalaAl~aGa~~vd~T--v~G--lG-eraGNa~lEevv~~L~~~g 337 (442)
. -+..++.+||+-+.+| +.+ +. ++. ..+++++...++..|
T Consensus 320 ~--~~~~~L~~GanD~GG~~~~~~d~~~p~~~-~~~~~~l~~~~~~aG 364 (843)
T PRK09234 320 D--ECAALLGAGIDDWGGVSPLTPDHVNPERP-WPQLDELAAVTAEAG 364 (843)
T ss_pred H--HHHHHHhcCCCcccchhhhHhhccCccCC-CCCHHHHHHHHHHcC
Confidence 4 3457899999999988 444 11 333 457899998888765
No 191
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=93.35 E-value=3.3 Score=39.73 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=104.4
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceE-----eeeccc----chhhH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI-----CGLSRC----NERDI 165 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i-----~~~~r~----~~~dI 165 (442)
+...+.++-.++++.+.+.|++.+-+- |..-+ .. .+...... .+...+ .++-+. ....+
T Consensus 15 ~p~~~~~d~~~~~~~~~~~g~~av~v~-~~~~~----~~---~~~~~~~~----~~i~~~~~~~~i~~p~~~~~~~~~~v 82 (235)
T cd00958 15 GPNPGLEDPEETVKLAAEGGADAVALT-KGIAR----AY---GREYAGDI----PLIVKLNGSTSLSPKDDNDKVLVASV 82 (235)
T ss_pred CCCccccCHHHHHHHHHhcCCCEEEeC-hHHHH----hc---ccccCCCC----cEEEEECCCCCCCCCCCCchhhhcCH
Confidence 445677888999999999999999883 32211 11 11110000 000000 111011 11224
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCC----CCCCHHHHHHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-EDA----GRSDRKFLYEIL 240 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-eda----sr~d~~~l~~~~ 240 (442)
+.+++ .|.+.|.+.+...+. +.++.++.+.+.++.+++.|++ +.+.. .+. ...+.+.+.+.+
T Consensus 83 ~~a~~----~Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~-~iie~~~~g~~~~~~~~~~~i~~~~ 149 (235)
T cd00958 83 EDAVR----LGADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLP-LIAWMYPRGPAVKNEKDPDLIAYAA 149 (235)
T ss_pred HHHHH----CCCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCCcccCccCHHHHHHHH
Confidence 44444 588877554433221 2467788999999999999986 44421 010 012356677778
Q ss_pred HHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee---cCCcchHHHHHHHHHHhCCCEEEe
Q 013498 241 GEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC---QNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 241 ~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~---HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.+.++|+|.|.+.=|. .++. ++.+.+..+ +|+-+=. .+|..-++.|+-.++++||+.|-.
T Consensus 150 ~~a~~~GaD~Ik~~~~~---~~~~----~~~i~~~~~----~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 150 RIGAELGADIVKTKYTG---DAES----FKEVVEGCP----VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred HHHHHHCCCEEEecCCC---CHHH----HHHHHhcCC----CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 88999999999995332 2333 444444443 2332222 245555789999999999998744
No 192
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.31 E-value=6.9 Score=36.38 Aligned_cols=174 Identities=17% Similarity=0.145 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc-----CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccch-hhHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF-----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAW 169 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~-----p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~ 169 (442)
+.+....-.+.++.+.+.|++.|+++. ....+-.++.++.+.+.. +. +..+.+.-.+. +.++.+
T Consensus 7 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~-~~--------~~~v~l~~~d~~~~~~~~- 76 (211)
T cd00429 7 LSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT-DL--------PLDVHLMVENPERYIEAF- 76 (211)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC-CC--------cEEEEeeeCCHHHHHHHH-
Confidence 345666667789999999999999953 112222245667766543 10 11111111121 233333
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad 249 (442)
..+|.+.|.+....+ +...+.++.++..|.. +.+.+. ..++.+.+.++. + ++|
T Consensus 77 ---~~~g~dgv~vh~~~~----------------~~~~~~~~~~~~~~~~-~g~~~~--~~~~~~~~~~~~----~-~~d 129 (211)
T cd00429 77 ---AKAGADIITFHAEAT----------------DHLHRTIQLIKELGMK-AGVALN--PGTPVEVLEPYL----D-EVD 129 (211)
T ss_pred ---HHcCCCEEEECccch----------------hhHHHHHHHHHHCCCe-EEEEec--CCCCHHHHHHHH----h-hCC
Confidence 356899876544322 2233557888888874 555442 112334443332 2 256
Q ss_pred EEec----cCcccccCHHHHHHHHHHHHHhCCCC-cceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 250 TLNI----PDTVGITMPTEFGKLIADIKANTPGI-ENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 250 ~I~l----aDT~G~~~P~~v~~li~~l~~~~p~~-~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.|++ .-+.|...+....+.++.+++..+.. .++++.+ +.|.-..|.-.++++|++.|
T Consensus 130 ~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v----~GGI~~env~~~~~~gad~i 191 (211)
T cd00429 130 LVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV----DGGINLETIPLLAEAGADVL 191 (211)
T ss_pred EEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 6544 12234445566667777777665310 0134433 24777788888999999986
No 193
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.23 E-value=9 Score=38.27 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=74.6
Q ss_pred HHHHHHhHcCCCEEEEcc----CCC-C--------------------hhHHHHHHHHHHHhcccccccCCccceEeeecc
Q 013498 105 DIARQLAKLGVDIIEAGF----PAA-S--------------------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG~----p~~-~--------------------~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r 159 (442)
+.++.+.+.|+..|++|. |.. . +.-...++.+...... . . .|.+.-..-
T Consensus 27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~-~----~-~p~i~si~g 100 (301)
T PRK07259 27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEE-F----D-TPIIANVAG 100 (301)
T ss_pred HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhc-c----C-CcEEEEecc
Confidence 567778889999999974 110 0 0001234444432211 0 0 233333332
Q ss_pred cchhhHHHHHHHHHhCC-CCEEEEeecCChH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHH
Q 013498 160 CNERDIKTAWEAVKYAK-RPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g-~~~v~i~~~~Sd~-h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l 236 (442)
.+.+++..+.+.+..+| .+.|.+.+++... |--..+..+. +.+.+.++.+|+. .+. |.+-+. .+.+.+
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~----~~~~eiv~~vr~~~~~p-v~vKl~----~~~~~~ 171 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP----ELAYEVVKAVKEVVKVP-VIVKLT----PNVTDI 171 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH----HHHHHHHHHHHHhcCCC-EEEEcC----CCchhH
Confidence 35677777777778888 8988775543211 1001122232 3444555555554 333 433221 123467
Q ss_pred HHHHHHHHHcCCcEEeccCcc
Q 013498 237 YEILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~ 257 (442)
.++++.+.++|+|.|.+.+|+
T Consensus 172 ~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 172 VEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred HHHHHHHHHcCCCEEEEEccc
Confidence 788999999999998876654
No 194
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.17 E-value=7.8 Score=37.80 Aligned_cols=180 Identities=21% Similarity=0.183 Sum_probs=105.1
Q ss_pred HHHHhHcCCCEEEEcc---------CCCCh----hHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHHH
Q 013498 107 ARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~---------p~~~~----~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (442)
++.++++|++.|=+|. |.... +..+.++.+.+... .|.+. |++ +.+++.+.+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~---------~Pv~~D~~~G~g--~~~~~~~~v 90 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVD---------LPVIADADTGYG--NALNVARTV 90 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhcc---------CCEEEEcCCCCC--CHHHHHHHH
Confidence 6777888999998863 32211 12344555544321 23332 233 445666666
Q ss_pred HHHHhCCCCEEEEeecCChHHH---HHHhCCCHHHHHHHHHHHHHHHHHcCCC-eEEEccCCCC---CCCHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHM---EHKLRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAG---RSDRKFLYEILGE 242 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~---~~~l~~s~~e~l~~~~~~v~~ar~~G~~-~V~f~~edas---r~d~~~l~~~~~~ 242 (442)
+.+..+|+..|++-....+-+. ..+.-.+.+|.+++++.+++.+.+. .+ .|.... |+. ....+..++-++.
T Consensus 91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiART-Da~~~~~~~~~eai~Ra~a 168 (243)
T cd00377 91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIART-DALLAGEEGLDEAIERAKA 168 (243)
T ss_pred HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEc-CchhccCCCHHHHHHHHHH
Confidence 6666689999988655543221 1112248899999888887777764 22 132232 321 2467889999999
Q ss_pred HHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 243 ~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
..++|||.+.+. |...++++.++.+. .+ .|+-+....... .-+.-.--+.|+++|-.
T Consensus 169 y~~AGAD~v~v~---~~~~~~~~~~~~~~----~~----~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~ 225 (243)
T cd00377 169 YAEAGADGIFVE---GLKDPEEIRAFAEA----PD----VPLNVNMTPGGN--LLTVAELAELGVRRVSY 225 (243)
T ss_pred HHHcCCCEEEeC---CCCCHHHHHHHHhc----CC----CCEEEEecCCCC--CCCHHHHHHCCCeEEEE
Confidence 999999999885 33366666665554 32 456666544432 11223333457777644
No 195
>PRK13753 dihydropteroate synthase; Provisional
Probab=93.16 E-value=10 Score=37.96 Aligned_cols=161 Identities=11% Similarity=0.207 Sum_probs=86.5
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh--------hHHHHHHHHHHHhcccccccCCccce
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASK--------EDFEAVRTIAKEVGNAVDAESGYVPV 153 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~--------~d~e~v~~l~~~~~~~~~~~~~l~~~ 153 (442)
|+-+|. |-..--|..++.+..++-++.+.+.|.++|++|..+..| +|++.+..+.+.+... . . .
T Consensus 7 IlNvTP-DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-----~-~-~ 78 (279)
T PRK13753 7 ILNLTE-DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-----M-H-R 78 (279)
T ss_pred EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-----C-C-c
Confidence 444444 333333455799999999999999999999999743322 3454333333322110 0 1 1
Q ss_pred EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC------
Q 013498 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED------ 227 (442)
Q Consensus 154 i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed------ 227 (442)
|+. --.+.+-++.|+++ |++.|.-.-..++ + .+.+.+.+.|+. +.+....
T Consensus 79 ISI-DT~~~~va~~al~a----GadiINDVsg~~d---------------~---~~~~vva~~~~~-vVlmH~~~~~~~~ 134 (279)
T PRK13753 79 VSI-DSFQPETQRYALKR----GVGYLNDIQGFPD---------------P---ALYPDIAEADCR-LVVMHSAQRDGIA 134 (279)
T ss_pred EEE-ECCCHHHHHHHHHc----CCCEEEeCCCCCc---------------h---HHHHHHHHcCCC-EEEEecCCCCCCC
Confidence 221 12245555666654 8887653222111 1 233344456665 3332210
Q ss_pred --CC--CC-C-----HHHHHHHHHHHHHcCC--cEEeccCccccc---CHHHHHHHHHHHHH
Q 013498 228 --AG--RS-D-----RKFLYEILGEVIKVGA--TTLNIPDTVGIT---MPTEFGKLIADIKA 274 (442)
Q Consensus 228 --as--r~-d-----~~~l~~~~~~~~~~Ga--d~I~laDT~G~~---~P~~v~~li~~l~~ 274 (442)
.. .. | .+|+.+-++.+.++|+ ++|.|==-.|.. ++++-.++++.+.+
T Consensus 135 ~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~ 196 (279)
T PRK13753 135 TRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQK 196 (279)
T ss_pred CcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHH
Confidence 01 11 1 1366666777888998 467665556753 57777777777544
No 196
>PRK15108 biotin synthase; Provisional
Probab=93.12 E-value=0.99 Score=46.39 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc--CCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH-HH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD-IK 273 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~-l~ 273 (442)
++.+|+++ .++.+++.|+..++.+. ++....+.+++.++++.+.+.|+. ++.|.|.++++...+|.+. +.
T Consensus 76 ls~eEI~~----~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeAGld 148 (345)
T PRK15108 76 MEVEQVLE----SARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANAGLD 148 (345)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHcCCC
Confidence 46666554 45566778987665542 123344568999999999887753 4568999997777776554 22
Q ss_pred H------hCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHH
Q 013498 274 A------NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAF 333 (442)
Q Consensus 274 ~------~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L 333 (442)
. -.|+ .-=.+|+..++---+.....|.++|...-.+-+.|+|| ..|+.+..+
T Consensus 149 ~~n~~leT~p~---~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE-----t~ed~v~~~ 206 (345)
T PRK15108 149 YYNHNLDTSPE---FYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE-----TVKDRAGLL 206 (345)
T ss_pred EEeeccccChH---hcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC-----CHHHHHHHH
Confidence 0 0111 11135566677777777788888998666677999998 455555544
No 197
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=93.03 E-value=11 Score=38.14 Aligned_cols=186 Identities=15% Similarity=0.078 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChh-HH----HHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-DF----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d~----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (442)
.++.++-..+++.-.+.+.+.|=-.++..... .. ..++.+++.. ..+|+..-+=-+ +.+.+.+|++
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~--------~~VPValHLDHg~~~e~i~~ai~ 95 (307)
T PRK05835 24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERY--------PHIPVALHLDHGTTFESCEKAVK 95 (307)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhc--------CCCeEEEECCCCCCHHHHHHHHH
Confidence 46889999999999999999875555533221 12 2444444431 113433222111 4555666665
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC--------CCCCHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA--------GRSDRKFL 236 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda--------sr~d~~~l 236 (442)
+ |...|.+ . .| ..+.+|+++..++.+++|+..|.. |+- +.||. ..+||+..
T Consensus 96 ~----GftSVM~-D-gS--------~l~~eeNi~~T~~vve~Ah~~gv~-VEaElG~vgg~ed~~~~~~~~~~~TdPeeA 160 (307)
T PRK05835 96 A----GFTSVMI-D-AS--------HHAFEENLELTSKVVKMAHNAGVS-VEAELGRLMGIEDNISVDEKDAVLVNPKEA 160 (307)
T ss_pred c----CCCEEEE-e-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccccccCCCHHHH
Confidence 4 8887654 2 23 346789999999999999999984 532 22332 26778876
Q ss_pred HHHHHHHHHcCCcEEecc--CcccccC----HHHHHHHHHHHHHhCCCCcceeEEEeecCCcch----------------
Q 013498 237 YEILGEVIKVGATTLNIP--DTVGITM----PTEFGKLIADIKANTPGIENVVISTHCQNDLGL---------------- 294 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~la--DT~G~~~----P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL---------------- 294 (442)
.++++ +-|+|.+-++ -+=|... |.--.++++.|++.++ +||.+|.=...+-
T Consensus 161 ~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~----iPLVLHGgSGip~e~~~~~~~~g~~~~~~ 233 (307)
T PRK05835 161 EQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN----IPLVLHGASAIPDDVRKSYLDAGGDLKGS 233 (307)
T ss_pred HHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC----CCEEEeCCCCCchHHhhhhhhhccccccc
Confidence 66554 5589864433 3335442 5555678888888773 7899887554333
Q ss_pred ---HHHHHHHHHHhCCCEEEe
Q 013498 295 ---STANTIAGACAGARQVEV 312 (442)
Q Consensus 295 ---A~ANalaAl~aGa~~vd~ 312 (442)
.+-+-..|+..|+.-|+.
T Consensus 234 ~g~~~e~~~kai~~GI~KiNi 254 (307)
T PRK05835 234 KGVPFEFLQESVKGGINKVNT 254 (307)
T ss_pred cCCCHHHHHHHHHcCceEEEe
Confidence 234667778888777743
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.86 Score=46.95 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=65.7
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCC-eEEEccCCCCCCCHHHHHH
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHK-LRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~-l~~s~~e~l~~~~~~v~~ar~~G~~-~V~f~~edasr~d~~~l~~ 238 (442)
+.+++..+++. |+|.|.+ ...+...+.. .+.+.++ +.+.|++|+++|.+ +|.++. ...-...+.+.+
T Consensus 15 ~l~~l~~ai~~----GADaVY~--G~~~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~-~~~~~~~~~~~~ 83 (347)
T COG0826 15 NLEDLKAAIAA----GADAVYI--GEKEFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNT-LLHNDELETLER 83 (347)
T ss_pred CHHHHHHHHHc----CCCEEEe--CCcccccccccccCCHHH----HHHHHHHHHHcCCeEEEEecc-ccccchhhHHHH
Confidence 55666666554 7777654 4333322222 3566555 67899999999985 233333 222334456789
Q ss_pred HHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCC
Q 013498 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGI 279 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~ 279 (442)
.++.+.+.|+|.|.++|-. +|..+++..|++
T Consensus 84 ~l~~l~e~GvDaviv~Dpg----------~i~l~~e~~p~l 114 (347)
T COG0826 84 YLDRLVELGVDAVIVADPG----------LIMLARERGPDL 114 (347)
T ss_pred HHHHHHHcCCCEEEEcCHH----------HHHHHHHhCCCC
Confidence 9999999999999999953 778888888863
No 199
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=93.01 E-value=3.6 Score=42.33 Aligned_cols=146 Identities=16% Similarity=0.081 Sum_probs=86.6
Q ss_pred CCHHHHHHHHHHHhHcC---CCEEEEc--cCCC-ChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHH-HHH
Q 013498 98 LTSKEKLDIARQLAKLG---VDIIEAG--FPAA-SKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAW 169 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~G---V~~IEvG--~p~~-~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~ 169 (442)
+......+|...+...| |+.|=+| -|.. ++++++ .++.+.+..... . . ..++.-+ +++.+. ..+
T Consensus 32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~--~--~--~eitie~--np~~lt~e~l 103 (360)
T TIGR00539 32 YTQALCQDLKHALSQTDQEPLESIFIGGGTPNTLSVEAFERLFESIYQHASLS--D--D--CEITTEA--NPELITAEWC 103 (360)
T ss_pred HHHHHHHHHHHHHHhcCCCcccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCC--C--C--CEEEEEe--CCCCCCHHHH
Confidence 44555566665555556 6777765 5653 345543 444444432211 0 1 1222222 333332 234
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Ga 248 (442)
+.++.+|+.+|.+-+-..+-.....+|+. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.|+
T Consensus 104 ~~l~~~Gv~risiGvqS~~~~~l~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~ 181 (360)
T TIGR00539 104 KGLKGAGINRLSLGVQSFRDDKLLFLGRQ--HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPI 181 (360)
T ss_pred HHHHHcCCCEEEEecccCChHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCC
Confidence 56677899999886655554555666652 2245667789999999985455544332 34567888899999999999
Q ss_pred cEEec
Q 013498 249 TTLNI 253 (442)
Q Consensus 249 d~I~l 253 (442)
+.|.+
T Consensus 182 ~~is~ 186 (360)
T TIGR00539 182 NHLSA 186 (360)
T ss_pred CEEEe
Confidence 98765
No 200
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=92.98 E-value=1.8 Score=43.46 Aligned_cols=109 Identities=20% Similarity=0.172 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc-----------ccCHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEFG 266 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G-----------~~~P~~v~ 266 (442)
+.+|.++.+.+.++. ..++ |.+.+++ +.-++..+.+.++.+.++|+..|.|-|.++ +..++++.
T Consensus 57 t~~e~~~~~~~I~~~---~~iP-viaD~d~-GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~ 131 (285)
T TIGR02317 57 TLDEVAEDARRITRV---TDLP-LLVDADT-GFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMV 131 (285)
T ss_pred CHHHHHHHHHHHHhc---cCCC-EEEECCC-CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHH
Confidence 667777766555433 3555 8888854 445589999999999999999999999873 34667778
Q ss_pred HHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 267 KLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 267 ~li~~l~~~~p~~~~v~i~~H----~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.|+..++.-.+. +..|-.- ....+--|+.-+.+..+||||.|=.
T Consensus 132 ~kI~Aa~~a~~~~-d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi 180 (285)
T TIGR02317 132 DKIAAAVDAKRDE-DFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP 180 (285)
T ss_pred HHHHHHHHhccCC-CEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 8888877754332 2333222 2234556777888889999998744
No 201
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.94 E-value=6.6 Score=35.19 Aligned_cols=174 Identities=17% Similarity=0.174 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhHcCCCEEEEccCCCChhHH-----HHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHHHHHHh
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFPAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWEAVKY 174 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~-----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e~l~~ 174 (442)
+.-.++++.+.+.|++.++++++...+.+. +.++.+.+..+ .|.+....-. ..+.+....+..+.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~ 82 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETD---------LPLGVQLAINDAAAAVDIAAAAARA 82 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcC---------CcEEEEEccCCchhhhhHHHHHHHH
Confidence 566888999999999999999765444321 22444444321 1222222111 12222211223455
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~--G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
+|.+.|.+....... .+...+.++.+++. ++. +.+.+......+ + . .+.+.|++.|.
T Consensus 83 ~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~-v~~~~~~~~~~~-~-~-----~~~~~g~d~i~ 141 (200)
T cd04722 83 AGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVK-VVVKLSPTGELA-A-A-----AAEEAGVDEVG 141 (200)
T ss_pred cCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCce-EEEEECCCCccc-h-h-----hHHHcCCCEEE
Confidence 689988776544211 12333455555554 553 444331111111 1 0 16678999998
Q ss_pred ccCcccccC----HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEEEe
Q 013498 253 IPDTVGITM----PTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEV 312 (442)
Q Consensus 253 laDT~G~~~----P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-ANalaAl~aGa~~vd~ 312 (442)
+....+... +......+..+++.. + ++|.. +-|... .|...+++.||+.|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~pi~~----~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGS-K---VPVIA----GGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcC-C---CCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence 876544221 111123344444433 2 44444 346666 7788888889998865
No 202
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.83 E-value=5.6 Score=40.72 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=90.0
Q ss_pred HHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeecC
Q 013498 107 ARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIAT 186 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~ 186 (442)
++.|+++|++.+-+|+.-. ..+..++.+++.. .|.|..-+.++.++|+.|++.+...|.+.|.+.=++
T Consensus 103 vd~l~~~~v~~~KI~S~~~--~n~~LL~~va~~g----------kPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~ 170 (327)
T TIGR03586 103 VDFLESLDVPAYKIASFEI--TDLPLIRYVAKTG----------KPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCT 170 (327)
T ss_pred HHHHHHcCCCEEEECCccc--cCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecC
Confidence 4556666777777765432 3477888887741 266766666799999999999988887666664444
Q ss_pred ChHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe--------c--cC
Q 013498 187 SGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--------I--PD 255 (442)
Q Consensus 187 Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~-~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~--------l--aD 255 (442)
|. +-.++++ ++ ...+...++ .++. |.|+ | .+ .. ..+...++.+||+.|- + +|
T Consensus 171 s~------YP~~~~~-~n--L~~i~~lk~~f~~p-VG~S--D--Ht-~G--~~~~~aAva~GA~iIEkH~tld~~l~G~D 233 (327)
T TIGR03586 171 SS------YPAPLED-AN--LRTIPDLAERFNVP-VGLS--D--HT-LG--ILAPVAAVALGACVIEKHFTLDRSDGGVD 233 (327)
T ss_pred CC------CCCCccc-CC--HHHHHHHHHHhCCC-EEee--C--CC-Cc--hHHHHHHHHcCCCEEEeCCChhhcCCCCC
Confidence 43 2222222 11 134444454 3554 6553 3 12 12 2566777888998542 3 67
Q ss_pred cccccCHHHHHHHHHHHHHh
Q 013498 256 TVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~ 275 (442)
-.=.+.|.++.++++.+++.
T Consensus 234 ~~~Sl~p~e~~~lv~~ir~~ 253 (327)
T TIGR03586 234 SAFSLEPDEFKALVKEVRNA 253 (327)
T ss_pred hhccCCHHHHHHHHHHHHHH
Confidence 78889999999999999864
No 203
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=92.81 E-value=1.4 Score=44.19 Aligned_cols=94 Identities=16% Similarity=0.078 Sum_probs=52.3
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHHHHH
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l~~~ 239 (442)
+.+|+..+.+.+.+.|.+.|.+-+++...-.....+....+.-+.+.+.++.+++. ... |.+=+ +.+.+.+.++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~P-v~vKl----~~~~~~~~~~ 185 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIP-VIAKL----TPNITDIREI 185 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCC-eEEEC----CCCchhHHHH
Confidence 56666666666655677777665544322111112211112223444555555543 333 44432 1233467889
Q ss_pred HHHHHHcCCcEEeccCcccc
Q 013498 240 LGEVIKVGATTLNIPDTVGI 259 (442)
Q Consensus 240 ~~~~~~~Gad~I~laDT~G~ 259 (442)
++.+.++|+|.|.+.+|...
T Consensus 186 a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 186 ARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred HHHHHHcCCCEEEEeccccc
Confidence 99999999999998877743
No 204
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.74 E-value=2.5 Score=41.21 Aligned_cols=110 Identities=22% Similarity=0.254 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc-----------ccCHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEFG 266 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G-----------~~~P~~v~ 266 (442)
+.++.++.+...++.. ... +....+. +..+++.+.+.++.+.+.|++.|.|-|.++ ...+++..
T Consensus 53 ~~~e~~~~~~~I~~~~---~~P-v~~D~~~-G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~ 127 (243)
T cd00377 53 TLDEVLAAVRRIARAV---DLP-VIADADT-GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFV 127 (243)
T ss_pred CHHHHHHHHHHHHhhc---cCC-EEEEcCC-CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHH
Confidence 5677776666655443 343 5555544 445778899999999999999999988763 56889999
Q ss_pred HHHHHHHHhCCCCcceeEEEe-----e-cCCcchHHHHHHHHHHhCCCEEEe
Q 013498 267 KLIADIKANTPGIENVVISTH-----C-QNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 267 ~li~~l~~~~p~~~~v~i~~H-----~-HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.|+..++...+..++.|-.= . .+.+--|+.-+.++.++|||.|-.
T Consensus 128 ~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 128 AKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV 179 (243)
T ss_pred HHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999998876543112344333 1 256667888888999999988743
No 205
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.72 E-value=1.1 Score=45.39 Aligned_cols=84 Identities=17% Similarity=0.066 Sum_probs=74.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGAC 304 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~H-NDlGLA~ANalaAl~ 304 (442)
++.|.+-+.++++.+.+.|++.|.++-|+|= ++.++-.++++...+...+ +++|-+|+- ++.--++.-+..|-+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--rvpvi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAG--RVPVFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999984 8899999999999888765 578888884 788999999999999
Q ss_pred hCCCEEEecc
Q 013498 305 AGARQVEVTI 314 (442)
Q Consensus 305 aGa~~vd~Tv 314 (442)
+||+.+=+.-
T Consensus 102 ~Gad~vlv~~ 111 (309)
T cd00952 102 LGADGTMLGR 111 (309)
T ss_pred hCCCEEEECC
Confidence 9999987653
No 206
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.72 E-value=13 Score=38.46 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=107.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEcc--CCCChhH-----HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGF--PAASKED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d-----~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (442)
-=+.++.+++|+.|.+.|++.+=-|. |..+|.. .+.++.+.+..... ++ +.++ .-...++++...
T Consensus 111 IEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~-----Gl-~~~t--ev~d~~~v~~~~ 182 (352)
T PRK13396 111 VENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT-----GL-GIIT--EVMDAADLEKIA 182 (352)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc-----CC-cEEE--eeCCHHHHHHHH
Confidence 35789999999999999999988774 5455432 23344444321111 22 2222 123566776665
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad 249 (442)
+. ++.+.+ +.-+ +. + .++++++.+.|.. |.+.- .--.+++++...++.+.+.|-.
T Consensus 183 ~~-----~d~lqI--ga~~--------~~------n-~~LL~~va~t~kP-Vllk~--G~~~t~ee~~~A~e~i~~~Gn~ 237 (352)
T PRK13396 183 EV-----ADVIQV--GARN--------MQ------N-FSLLKKVGAQDKP-VLLKR--GMAATIDEWLMAAEYILAAGNP 237 (352)
T ss_pred hh-----CCeEEE--Cccc--------cc------C-HHHHHHHHccCCe-EEEeC--CCCCCHHHHHHHHHHHHHcCCC
Confidence 42 455544 3221 11 1 2356666677875 66643 2234788888999999999998
Q ss_pred EEeccCc-----c-cccCHHHH--HHHHHHHHHhCCCCcceeEEE---eecCCcchHHHHHHHHHHhCCC--EEEeccc
Q 013498 250 TLNIPDT-----V-GITMPTEF--GKLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGAR--QVEVTIN 315 (442)
Q Consensus 250 ~I~laDT-----~-G~~~P~~v--~~li~~l~~~~p~~~~v~i~~---H~HNDlGLA~ANalaAl~aGa~--~vd~Tv~ 315 (442)
.|.||.. . ++ |... -..|..+++.+. +||-+ |.=-...+..+-+++|+.+||+ .|+.=..
T Consensus 238 ~viL~erG~rtf~s~y--~~~~~dl~ai~~lk~~~~----lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~ 310 (352)
T PRK13396 238 NVILCERGIRTFDRQY--TRNTLDLSVIPVLRSLTH----LPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN 310 (352)
T ss_pred eEEEEecCCccCcCCC--CCCCcCHHHHHHHHHhhC----CCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 8888876 3 32 2222 234556666542 45622 3223344456889999999999 7776554
No 207
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=92.71 E-value=2.2 Score=42.92 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc-----c------ccCHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-----G------ITMPTEF 265 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~-----G------~~~P~~v 265 (442)
.+.+|.++.+.+.++. ..++ |...+++++- ++..+.+.++.+.++|+..|.|-|.+ | ...++++
T Consensus 61 l~~~e~~~~~~~I~~~---~~iP-viaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~ 135 (292)
T PRK11320 61 TTLDDVLIDVRRITDA---CDLP-LLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEM 135 (292)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHH
Confidence 3667777766665443 3455 7888855444 99999999999999999999999987 3 3467777
Q ss_pred HHHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 266 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 266 ~~li~~l~~~~p~~~~v~i~~H----~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
.+.|+..++.-.+. +..|-.- ..+++--|+.-+.+..+||||.|=. .|..++|++-...+
T Consensus 136 ~~kI~Aa~~a~~~~-d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi--------~~~~~~~~i~~~~~ 199 (292)
T PRK11320 136 VDRIKAAVDARTDP-DFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP--------EAMTELEMYRRFAD 199 (292)
T ss_pred HHHHHHHHHhccCC-CeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe--------cCCCCHHHHHHHHH
Confidence 88888777654322 2333222 2234566888888999999998744 13345666554443
No 208
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=92.68 E-value=1.4 Score=42.92 Aligned_cols=110 Identities=20% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCc-cc-----ccCHHHHHHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT-VG-----ITMPTEFGKLIA 270 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT-~G-----~~~P~~v~~li~ 270 (442)
.|.+|.++.++++++.. .++ |.+..++++-.++..+.+.++.+.++|+..|.|-|. .| ...++++.+.|+
T Consensus 52 lt~~e~~~~~~~I~~~~---~iP-v~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~ 127 (238)
T PF13714_consen 52 LTLTEMLAAVRRIARAV---SIP-VIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIR 127 (238)
T ss_dssp S-HHHHHHHHHHHHHHS---SSE-EEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhh---cCc-EEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHH
Confidence 46788877776665553 454 888886654455999999999999999999999999 44 457888888888
Q ss_pred HHHHhCCCCcceeEEEeecC------CcchHHHHHHHHHHhCCCEEE
Q 013498 271 DIKANTPGIENVVISTHCQN------DLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 271 ~l~~~~p~~~~v~i~~H~HN------DlGLA~ANalaAl~aGa~~vd 311 (442)
..++.-.+. +..|-.-+-- .+--|+.=+.+..+||||.|=
T Consensus 128 Aa~~a~~~~-~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~if 173 (238)
T PF13714_consen 128 AAVDARRDP-DFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIF 173 (238)
T ss_dssp HHHHHHSST-TSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHhccCC-eEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 888754332 2333333222 233455667778888998873
No 209
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=92.66 E-value=3.8 Score=39.65 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhH---HHHHHHHHHHhcccccccCCccceEeeecccc-------hhhHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKED---FEAVRTIAKEVGNAVDAESGYVPVICGLSRCN-------ERDIKT 167 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d---~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~-------~~dI~~ 167 (442)
.+.++++ +...++|++.||+..+...+.+ .+.++.+.+..+..+. .+.+....+.... .+.++.
T Consensus 15 ~~l~~~l---~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (274)
T COG1082 15 LPLEEIL---RKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEIT---SLAPFSNNLLSPDEEEREEALEELKR 88 (274)
T ss_pred CCHHHHH---HHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEE---eecccCCCcCCCchhhHHHHHHHHHH
Confidence 4555554 4555668999999742233332 4555555544322110 0000000011111 122333
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc---CCCCCCCHHHHHHHHHHH
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSP---EDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~-~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~---edasr~d~~~l~~~~~~~ 243 (442)
+++.....|.+.+.++.+....+-.. .-....+...+.+.++.++|++.|+. +.+.. +.....+.. +.++.+
T Consensus 89 ~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~~~~~~~~~~~~~---~~~~~~ 164 (274)
T COG1082 89 AIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALENHHHPGNVVETGA---DALDLL 164 (274)
T ss_pred HHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEeecCCccceeecCH---HHHHHH
Confidence 55655667888777655433221110 01123366788889999999999874 55543 111112222 233444
Q ss_pred HHcCCcEE-eccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccC
Q 013498 244 IKVGATTL-NIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAG 322 (442)
Q Consensus 244 ~~~Gad~I-~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraG 322 (442)
.+.+-+.+ .+-|+.=...-.. +.+..+++..+ -...+|+||..+--.. .+..+ .-..-.|+ |
T Consensus 165 ~~~~~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~----rI~hvH~kD~~~~~~~----~~~~~-----~~~~~pG~--G 227 (274)
T COG1082 165 REVDSPNVGLLLDTGHAFFAGE--DPLEAIRKLGD----RIGHVHLKDADGPTLD----IVNFL-----GQHLPPGD--G 227 (274)
T ss_pred HhcCCCceEEEEecCchhhccC--CHHHHHHHhhc----ceeEEEEeecCcchhc----ccCCC-----cceeCCCC--C
Confidence 44443333 4446553332222 45666666554 3578999999886544 11111 11223334 8
Q ss_pred cccHHHHHHHHHhccc
Q 013498 323 NASLEEVVMAFKCRGE 338 (442)
Q Consensus 323 Na~lEevv~~L~~~g~ 338 (442)
..+..++...|...|.
T Consensus 228 ~id~~~i~~~L~~~gy 243 (274)
T COG1082 228 DIDFKAIFSALREAGY 243 (274)
T ss_pred CcCHHHHHHHHHHcCC
Confidence 8999999999998753
No 210
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=92.62 E-value=4.3 Score=43.19 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=87.9
Q ss_pred CCCEEEEc--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhH-HHHHHHHHhCCCCEEEEeecCCh
Q 013498 114 GVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATSG 188 (442)
Q Consensus 114 GV~~IEvG--~p~~-~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~e~l~~~g~~~v~i~~~~Sd 188 (442)
+|+.|-+| -|.. .++++ +.++.+.+..+.. ....+..- ++...+ +..++.++.+|+.+|.+-+-..+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~------~~~eitie--~np~~l~~e~l~~lk~~G~~risiGvqS~~ 173 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFN------ADAEISIE--IDPRYITKDVIDALRDEGFNRLSFGVQDFN 173 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCC------CCCeEEEE--eccCcCCHHHHHHHHHcCCCEEEEcCCCCC
Confidence 67777775 3543 34443 3445554432110 00122222 233333 22355667789999888654444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHcCCcEEeccCc-----------
Q 013498 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDT----------- 256 (442)
Q Consensus 189 ~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~Gad~I~laDT----------- 256 (442)
-.....+++. ...+.+.++++.+++.|+..|.+.+.. ...-+.+.+.+.++.+.+.+++.|.+-.-
T Consensus 174 ~~~l~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~ 251 (455)
T TIGR00538 174 KEVQQAVNRI--QPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQR 251 (455)
T ss_pred HHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHh
Confidence 4455566653 224667788999999998534333221 13457788889999999999998766532
Q ss_pred ----ccccCHHHHHHHHHHHHHh
Q 013498 257 ----VGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 257 ----~G~~~P~~v~~li~~l~~~ 275 (442)
.....+++..+++..+.+.
T Consensus 252 ~~~~~~~~~~e~~~~~~~~~~~~ 274 (455)
T TIGR00538 252 KIPEAALPSAEEKLDILQETIAF 274 (455)
T ss_pred cccccCCCCHHHHHHHHHHHHHH
Confidence 1123466767676666544
No 211
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.59 E-value=1.2 Score=43.45 Aligned_cols=89 Identities=11% Similarity=-0.076 Sum_probs=58.5
Q ss_pred hCCCCEEEEeecCChHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~------~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
.+|++.|.+.. |- .-..+| .+.++.+..++...+-+.. . .|...+++.+-.+++.+.+.++++.++|
T Consensus 30 ~aG~dai~v~~--s~--~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--~-pviaD~~~G~g~~~~~~~~~~~~l~~aG 102 (240)
T cd06556 30 DAGLNVMLVGD--SQ--GMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--A-LIVADLPFGAYGAPTAAFELAKTFMRAG 102 (240)
T ss_pred HcCCCEEEECh--HH--HHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--C-CEEEeCCCCCCcCHHHHHHHHHHHHHcC
Confidence 45787765432 21 112333 3566666655544433321 2 3777887776667789999999999999
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHh
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
++.|.|-|.. ++.+.++.+++.
T Consensus 103 a~gv~iED~~------~~~~~i~ai~~a 124 (240)
T cd06556 103 AAGVKIEGGE------WHIETLQMLTAA 124 (240)
T ss_pred CcEEEEcCcH------HHHHHHHHHHHc
Confidence 9999999973 555677777765
No 212
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=92.53 E-value=6.2 Score=38.08 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhHcCCCEEEEcc----CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAGF----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~----p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.+-.++++.|.+.|++.|=+-. ....+.+++.++++++... .|.+.+-+-...+|++..++. |
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~---------~pv~~~GGI~s~~d~~~~l~~----G 93 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVF---------IPLTVGGGIRSLEDARRLLRA----G 93 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCC---------CCEEEeCCCCCHHHHHHHHHc----C
Confidence 3668899999999999554421 1123446788888887642 244444343466777766653 7
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--C---C---------CCCCCHHHHHHHHHH
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E---D---------AGRSDRKFLYEILGE 242 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--e---d---------asr~d~~~l~~~~~~ 242 (442)
++.+.+- .. .+ .++ +.+.++++. .+.+.+.++. - + ....+.....++++.
T Consensus 94 ~~~v~ig--~~-~~------~~p----~~~~~i~~~---~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (243)
T cd04731 94 ADKVSIN--SA-AV------ENP----ELIREIAKR---FGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKE 157 (243)
T ss_pred CceEEEC--ch-hh------hCh----HHHHHHHHH---cCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHH
Confidence 7766432 11 11 111 223333333 2321233322 1 0 001123445678888
Q ss_pred HHHcCCcEEec--cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh-CCCEEEeccccccc
Q 013498 243 VIKVGATTLNI--PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA-GARQVEVTINGIGE 319 (442)
Q Consensus 243 ~~~~Gad~I~l--aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a-Ga~~vd~Tv~GlGe 319 (442)
+.+.|++.|.+ -+..|..... -.++++.+++..+ +|+-.-.--. ......++++. ||+.+ +.|-.=
T Consensus 158 l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~----~pvia~GGi~---~~~di~~~l~~~g~dgv---~vg~al 226 (243)
T cd04731 158 VEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN----IPVIASGGAG---KPEHFVEAFEEGGADAA---LAASIF 226 (243)
T ss_pred HHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC----CCEEEeCCCC---CHHHHHHHHHhCCCCEE---EEeHHH
Confidence 89999999888 4444543332 3566777776652 4555443211 12334444554 66654 222111
Q ss_pred ccCcccHHHHHHHHH
Q 013498 320 RAGNASLEEVVMAFK 334 (442)
Q Consensus 320 raGNa~lEevv~~L~ 334 (442)
-.|..+++++...|+
T Consensus 227 ~~~~~~~~~~~~~~~ 241 (243)
T cd04731 227 HFGEYTIAELKEYLA 241 (243)
T ss_pred HcCCCCHHHHHHHHh
Confidence 235556666655554
No 213
>PRK05660 HemN family oxidoreductase; Provisional
Probab=92.53 E-value=3 Score=43.27 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred cCCCEEEEc--cCCCC-hhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHH-HHHHHHHhCCCCEEEEeecCC
Q 013498 113 LGVDIIEAG--FPAAS-KEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATS 187 (442)
Q Consensus 113 ~GV~~IEvG--~p~~~-~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~e~l~~~g~~~v~i~~~~S 187 (442)
.+|+.|=+| -|..- +++++ .++.+.+..+.. . . ..++.-+ +++++. .-++.++.+|+.+|.+-+-..
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~--~--~--~eit~e~--np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFA--P--D--AEITMEA--NPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCC--C--C--cEEEEEe--CcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 467777664 56543 44544 445555443211 0 0 1233222 444443 235667778999999876666
Q ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 188 d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
+-.....+|+. ...+++.++++.+++.|+..|.+.+.. -..-+.+.+.+.++.+.+.|++.|.+
T Consensus 129 ~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~~is~ 193 (378)
T PRK05660 129 SEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPPHLSW 193 (378)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEe
Confidence 66666677763 234566778999999998644443322 23457788889999999999998764
No 214
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=92.51 E-value=2.2 Score=43.18 Aligned_cols=140 Identities=13% Similarity=0.128 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccC---CC---ChhH-HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFP---AA---SKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p---~~---~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+.++.++.++.+.+.|+++|-+..- .. ..+. .+.++.|.+..+. . .+-.++. ...+.+..++
T Consensus 91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~-------i--~Ievl~~-d~~g~~e~l~ 160 (302)
T TIGR00510 91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPN-------I--KIETLVP-DFRGNIAALD 160 (302)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCC-------C--EEEEeCC-cccCCHHHHH
Confidence 46789999999999999998877531 11 1111 3455555443211 1 2222221 1111234666
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCC---eEEEccCCCCCCCHHHHHHHHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCD---DVEFSPEDAGRSDRKFLYEILGEVIK 245 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~--G~~---~V~f~~edasr~d~~~l~~~~~~~~~ 245 (442)
.++.+|.+.+...+-+++. +..+++. ....++..++++++++. |+. .+.+++ +. +.+++.+.++.+.+
T Consensus 161 ~l~~aG~dv~~hnlEt~~~-l~~~vrr--~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGl---GE-Teee~~etl~~Lre 233 (302)
T TIGR00510 161 ILLDAPPDVYNHNLETVER-LTPFVRP--GATYRWSLKLLERAKEYLPNLPTKSGIMVGL---GE-TNEEIKQTLKDLRD 233 (302)
T ss_pred HHHHcCchhhcccccchHH-HHHHhCC--CCCHHHHHHHHHHHHHhCCCCeecceEEEEC---CC-CHHHHHHHHHHHHh
Confidence 6777888877766655543 3344443 12234555678888887 443 133443 33 35778899999999
Q ss_pred cCCcEEecc
Q 013498 246 VGATTLNIP 254 (442)
Q Consensus 246 ~Gad~I~la 254 (442)
.|++.+.+.
T Consensus 234 lg~d~v~ig 242 (302)
T TIGR00510 234 HGVTMVTLG 242 (302)
T ss_pred cCCCEEEee
Confidence 999988763
No 215
>PRK15452 putative protease; Provisional
Probab=92.46 E-value=1.4 Score=47.01 Aligned_cols=144 Identities=16% Similarity=0.115 Sum_probs=84.8
Q ss_pred eEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC-CC
Q 013498 153 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RS 231 (442)
Q Consensus 153 ~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas-r~ 231 (442)
.+.+.+. +.+.++.|++ +|++.|.+-.+...... ..-+.+. +.+.+++++|++.|.+ |.+...-.. ..
T Consensus 5 eLlapag-~~e~l~aAi~----~GADaVY~G~~~~~~R~-~~~~f~~----edl~eav~~ah~~g~k-vyvt~n~i~~e~ 73 (443)
T PRK15452 5 ELLSPAG-TLKNMRYAFA----YGADAVYAGQPRYSLRV-RNNEFNH----ENLALGINEAHALGKK-FYVVVNIAPHNA 73 (443)
T ss_pred EEEEECC-CHHHHHHHHH----CCCCEEEECCCccchhh-hccCCCH----HHHHHHHHHHHHcCCE-EEEEecCcCCHH
Confidence 4444443 5566666665 48998876332211111 0112343 4577899999999985 666543222 23
Q ss_pred CHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH---HHhCCC
Q 013498 232 DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG---ACAGAR 308 (442)
Q Consensus 232 d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA---l~aGa~ 308 (442)
+.+.+.+.++.+.++|+|.|.+.| .| ++..+++..|+ ++ + |-|..|-+-|+.++ .+.|++
T Consensus 74 el~~~~~~l~~l~~~gvDgvIV~d-~G---------~l~~~ke~~p~---l~--i--h~stqlni~N~~a~~f~~~lG~~ 136 (443)
T PRK15452 74 KLKTFIRDLEPVIAMKPDALIMSD-PG---------LIMMVREHFPE---MP--I--HLSVQANAVNWATVKFWQQMGLT 136 (443)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcC-HH---------HHHHHHHhCCC---Ce--E--EEEecccCCCHHHHHHHHHCCCc
Confidence 456778888899999999999998 33 45667777775 22 2 33444444444432 345887
Q ss_pred EEEecccccccccCcccHHHHHHH
Q 013498 309 QVEVTINGIGERAGNASLEEVVMA 332 (442)
Q Consensus 309 ~vd~Tv~GlGeraGNa~lEevv~~ 332 (442)
.|-.+- -.+++|+-..
T Consensus 137 rvvLSr--------ELsl~EI~~i 152 (443)
T PRK15452 137 RVILSR--------ELSLEEIEEI 152 (443)
T ss_pred EEEECC--------cCCHHHHHHH
Confidence 765543 2456665443
No 216
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.44 E-value=3.8 Score=41.98 Aligned_cols=133 Identities=13% Similarity=0.060 Sum_probs=83.4
Q ss_pred HHHHHhCCCCEEEEeecC--------Ch--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC--eEEEccCCCC-----C
Q 013498 169 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD--DVEFSPEDAG-----R 230 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~--------Sd--~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~--~V~f~~edas-----r 230 (442)
.+..+.+|.|.|.+..+- |+ -+...++|=|.+.-.+-+.+.++.+|+. |.+ .|.++.++.. -
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCC
Confidence 344566899999886554 22 1333456656676667777777777764 432 2455654321 2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC-C
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG-A 307 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laD--T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG-a 307 (442)
.+.++..++++.+.+.|+|.|.+.. +... .+....++.+.+|+.++ ++|..=.--+ ...+..+++.| |
T Consensus 238 ~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~----ipvi~~G~i~----~~~a~~~l~~g~~ 308 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFK----GPLIAAGGYD----AESAEAALADGKA 308 (338)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcC----CCEEEECCCC----HHHHHHHHHcCCC
Confidence 3678888999999999999998832 2221 13345677788888874 3443322222 56677888876 7
Q ss_pred CEE
Q 013498 308 RQV 310 (442)
Q Consensus 308 ~~v 310 (442)
|.|
T Consensus 309 D~V 311 (338)
T cd02933 309 DLV 311 (338)
T ss_pred CEE
Confidence 766
No 217
>PRK10481 hypothetical protein; Provisional
Probab=92.39 E-value=2.6 Score=40.79 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=80.3
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHH----HHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeee
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKL----DIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl----~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~ 157 (442)
.+=|=||||.|.. ++.+... .....|++.|++.|=+..-+.-|. +...+.+. +.|
T Consensus 57 ~lvtrL~dG~~v~---~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgdfp~-l~a~r~~l------------~~P----- 115 (224)
T PRK10481 57 VLVTRLNDGQQVH---VSKQKVERDLQSVIEVLDNQGYDVILLLCTGEFPS-LTARNAIL------------LEP----- 115 (224)
T ss_pred eeEEEecCCCEEE---EEHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCCC-ccccCccc------------cCc-----
Confidence 3445699999854 5544333 445678889999887742221111 11111110 011
Q ss_pred cccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHH
Q 013498 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (442)
Q Consensus 158 ~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~ 237 (442)
...|...+.++. +-.++.++.|.-+ .+.+..++-++.|++ +.+...+.+..+++.+.
T Consensus 116 ----~~~i~~lv~Al~--~g~riGVitP~~~----------------qi~~~~~kw~~~G~~-v~~~~aspy~~~~~~l~ 172 (224)
T PRK10481 116 ----SRILPPLVAAIV--GGHQVGVIVPVEE----------------QLAQQAQKWQVLQKP-PVFALASPYHGSEEELI 172 (224)
T ss_pred ----hhhHHHHHHHhc--CCCeEEEEEeCHH----------------HHHHHHHHHHhcCCc-eeEeecCCCCCCHHHHH
Confidence 112223344433 4478888877643 233444555667886 77766444446777899
Q ss_pred HHHHHHHHcCCcEEeccCcccccC
Q 013498 238 EILGEVIKVGATTLNIPDTVGITM 261 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~~ 261 (442)
+.++.+.+.|+|.|.+ |-.|+.+
T Consensus 173 ~aa~~L~~~gaD~Ivl-~C~G~~~ 195 (224)
T PRK10481 173 DAGKELLDQGADVIVL-DCLGYHQ 195 (224)
T ss_pred HHHHHhhcCCCCEEEE-eCCCcCH
Confidence 9999999999999987 7778877
No 218
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=92.34 E-value=13 Score=37.08 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=117.2
Q ss_pred CCHHHHHHHHHHHhH-cCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 98 LTSKEKLDIARQLAK-LGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~-~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
+..+.-.++++.|.+ .||+-|=+ | ++..+.+|+. .++...+... +.+|.|++.+..+.++.-.-.+
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-------~~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-------GKVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-------CCCCEEecCCCCCHHHHHHHHH
Confidence 788889999999999 99998866 3 4556666654 4555555542 2356777776555555433333
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcCC
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~Ga 248 (442)
..+.+|++.+.+..|.. ++.+.++.++-..+.++. .+++.+-++.+. ....+++.+.+++ + -.
T Consensus 94 ~a~~~Gad~v~v~~P~y-------~~~~~~~l~~~f~~va~a---~~lPv~iYn~P~~tg~~l~~~~l~~L~----~-~p 158 (293)
T PRK04147 94 YATELGYDAISAVTPFY-------YPFSFEEICDYYREIIDS---ADNPMIVYNIPALTGVNLSLDQFNELF----T-LP 158 (293)
T ss_pred HHHHcCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHHh---CCCCEEEEeCchhhccCCCHHHHHHHh----c-CC
Confidence 44667999887765542 344666666666555443 345545566543 3345667666555 2 25
Q ss_pred cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHH
Q 013498 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (442)
Q Consensus 249 d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEe 328 (442)
..+.+.||.|- ..++.+++ +..++ . ..+-++++ +.+.++..|++..= . ..+|.-.|+
T Consensus 159 nvvgiK~s~~d--~~~~~~~~----~~~~~---~-~v~~G~d~------~~~~~l~~G~~G~i---s----~~~n~~p~~ 215 (293)
T PRK04147 159 KVIGVKQTAGD--LYQLERIR----KAFPD---K-LIYNGFDE------MFASGLLAGADGAI---G----STYNVNGWR 215 (293)
T ss_pred CEEEEEeCCCC--HHHHHHHH----HhCCC---C-EEEEeehH------HHHHHHHcCCCEEE---e----chhhhCHHH
Confidence 88999999874 45555544 33443 2 22444442 24566788986542 2 256777777
Q ss_pred HHHHHHh
Q 013498 329 VVMAFKC 335 (442)
Q Consensus 329 vv~~L~~ 335 (442)
++...+.
T Consensus 216 ~~~l~~~ 222 (293)
T PRK04147 216 ARQIFEA 222 (293)
T ss_pred HHHHHHH
Confidence 7766654
No 219
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.31 E-value=1.4 Score=44.13 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCccc--------ccCHHHHHHHHHHHH
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVG--------ITMPTEFGKLIADIK 273 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G--------~~~P~~v~~li~~l~ 273 (442)
...++|+.+++.|.. +.+.. +|-+...+..+.+.++..| ..|+.|.|++= ....+.+.+.++.+|
T Consensus 109 ~T~~~V~~~~~~~~~-~~I~~---TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r 184 (284)
T PRK06096 109 YLAQMLALLRERYPD-GNIAC---TRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLR 184 (284)
T ss_pred HHHHHHHHHHhhCCC-cEEEe---cCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHH
Confidence 456778888777754 55533 4655566777888888887 46899999981 112346788899999
Q ss_pred HhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhcc---ccccCCccCCCCh
Q 013498 274 ANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGINT 350 (442)
Q Consensus 274 ~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g---~~~~~G~~tgidl 350 (442)
+..|.. .+.|++ - -+.-+.+|+++|||.|-. .|-+.|++-....... ........-||++
T Consensus 185 ~~~~~~-kIeVEv--~-----tleqa~ea~~agaDiI~L---------Dn~~~e~l~~av~~~~~~~~~~~leaSGGI~~ 247 (284)
T PRK06096 185 RHAPEK-KIVVEA--D-----TPKEAIAALRAQPDVLQL---------DKFSPQQATEIAQIAPSLAPHCTLSLAGGINL 247 (284)
T ss_pred HhCCCC-CEEEEC--C-----CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhhccCCCeEEEEECCCCH
Confidence 988753 255555 3 366778999999999977 7888888776665431 1212234568999
Q ss_pred hHHHHHHH
Q 013498 351 RHIVMASK 358 (442)
Q Consensus 351 ~~L~~ls~ 358 (442)
+.+.+.+.
T Consensus 248 ~ni~~yA~ 255 (284)
T PRK06096 248 NTLKNYAD 255 (284)
T ss_pred HHHHHHHh
Confidence 99977763
No 220
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.30 E-value=4.6 Score=40.69 Aligned_cols=135 Identities=16% Similarity=0.060 Sum_probs=83.4
Q ss_pred HHHHHhCCCCEEEEeecC--------Ch--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCCC--CCCC
Q 013498 169 WEAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSD 232 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~--------Sd--~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~eda--sr~d 232 (442)
.+..+.+|.+.|.+.... |+ -+...++|-+.+.-.+.+.+.++.+|+. |-. .|.+++.+. ...+
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~ 226 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLT 226 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCC
Confidence 344566899999887652 22 1334456667777777778888888875 322 244455321 2356
Q ss_pred HHHHHHHHHHHHHcCCcEEeccCccccc----------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 233 RKFLYEILGEVIKVGATTLNIPDTVGIT----------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~laDT~G~~----------~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
++...++++.+.++|+|.|.+......- .+....++++.+++.++ ++|..-.--. ...++..+
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~~Ggi~---t~~~a~~~ 299 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK----IPVIAVGGIR---DPEVAEEI 299 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC----CCEEEeCCCC---CHHHHHHH
Confidence 7889999999999999999876443221 11334467778888763 4454432211 24556677
Q ss_pred HHh-CCCEE
Q 013498 303 ACA-GARQV 310 (442)
Q Consensus 303 l~a-Ga~~v 310 (442)
++. ||+.|
T Consensus 300 l~~g~aD~V 308 (327)
T cd02803 300 LAEGKADLV 308 (327)
T ss_pred HHCCCCCee
Confidence 777 57765
No 221
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.30 E-value=13 Score=37.09 Aligned_cols=195 Identities=14% Similarity=0.059 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEc-----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLG-VDIIEAG-----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~G-V~~IEvG-----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~ 169 (442)
.+..+.-.++++.|.+.| ++.|=++ ++..+.+|+. .++..++... +.+|.+.+.+..+.++.-...
T Consensus 17 ~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~~~pvi~gv~~~~t~~~i~la 89 (290)
T TIGR00683 17 TINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-------DQIALIAQVGSVNLKEAVELG 89 (290)
T ss_pred CcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCCCCHHHHHHHH
Confidence 478888999999999999 9998664 4556666654 5555666542 235677777655555543333
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC--CCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--GRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda--sr~d~~~l~~~~~~~~~~G 247 (442)
+..+.+|++.|.+..|-. +..+.+++++-..+.++.+. ++.-+-++.... ...+++.+.+++ +.
T Consensus 90 ~~a~~~Gad~v~v~~P~y-------~~~~~~~i~~yf~~v~~~~~--~lpv~lYn~P~~tg~~l~~~~i~~L~----~~- 155 (290)
T TIGR00683 90 KYATELGYDCLSAVTPFY-------YKFSFPEIKHYYDTIIAETG--GLNMIVYSIPFLTGVNMGIEQFGELY----KN- 155 (290)
T ss_pred HHHHHhCCCEEEEeCCcC-------CCCCHHHHHHHHHHHHhhCC--CCCEEEEeCccccccCcCHHHHHHHh----cC-
Confidence 444667999887755432 34566777666665554322 344345555432 344566555544 33
Q ss_pred CcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
...+.+.||.|- +..+.+++ +..++ ..| +=+++ ...+.++.+|++.. +. ..+|.-.+
T Consensus 156 pnv~giK~s~~d--~~~~~~~~----~~~~~---~~v-~~G~d------~~~~~~l~~G~~G~---i~----~~~n~~P~ 212 (290)
T TIGR00683 156 PKVLGVKFTAGD--FYLLERLK----KAYPN---HLI-WAGFD------EMMLPAASLGVDGA---IG----STFNVNGV 212 (290)
T ss_pred CCEEEEEeCCCC--HHHHHHHH----HhCCC---CEE-EECch------HHHHHHHHCCCCEE---Ee----cHHHhCHH
Confidence 689999999874 55555544 33443 222 22232 23456677787765 22 24666666
Q ss_pred HHHHHHHh
Q 013498 328 EVVMAFKC 335 (442)
Q Consensus 328 evv~~L~~ 335 (442)
+++...+.
T Consensus 213 ~~~~i~~~ 220 (290)
T TIGR00683 213 RARQIFEL 220 (290)
T ss_pred HHHHHHHH
Confidence 66655544
No 222
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=92.28 E-value=1.6 Score=43.61 Aligned_cols=133 Identities=11% Similarity=0.125 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccc--------cCHHHHHHHHHHHH
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGI--------TMPTEFGKLIADIK 273 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~--------~~P~~v~~li~~l~ 273 (442)
...++|+.+++.+.. +.+.. +|-+...+..+.+.+..+| ..++.|.|++=+ ..++.+.+.++.+|
T Consensus 108 ~T~~~V~~~~~~~~~-~~I~~---TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r 183 (277)
T TIGR01334 108 YTHKMVTLAKKISPM-AVVAC---TRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLK 183 (277)
T ss_pred HHHHHHHHHHhcCCC-CEEEe---cCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHH
Confidence 456778888876653 44432 4555556777778888876 468999999311 11246888999999
Q ss_pred HhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhc---cccccCCccCCCCh
Q 013498 274 ANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCR---GEHILGGLYTGINT 350 (442)
Q Consensus 274 ~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~---g~~~~~G~~tgidl 350 (442)
+..|.. .+.|++. .+.-+.+|+++|++.|-.= |.+.|++....+.. .........-||++
T Consensus 184 ~~~~~~-kIeVEv~-------tleea~ea~~~GaDiI~lD---------n~~~e~l~~~v~~l~~~~~~~~leasGGI~~ 246 (277)
T TIGR01334 184 QTAPER-KITVEAD-------TIEQALTVLQASPDILQLD---------KFTPQQLHHLHERLKFFDHIPTLAAAGGINP 246 (277)
T ss_pred HhCCCC-CEEEECC-------CHHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCH
Confidence 988753 3555553 4677889999999998554 78888887766654 22212235568999
Q ss_pred hHHHHHHH
Q 013498 351 RHIVMASK 358 (442)
Q Consensus 351 ~~L~~ls~ 358 (442)
+.+.+.+.
T Consensus 247 ~ni~~ya~ 254 (277)
T TIGR01334 247 ENIADYIE 254 (277)
T ss_pred HHHHHHHh
Confidence 99977763
No 223
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=92.25 E-value=5.4 Score=42.42 Aligned_cols=133 Identities=14% Similarity=0.174 Sum_probs=78.6
Q ss_pred cCCCEEEEc--cCCC-ChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhH-HHHHHHHHhCCCCEEEEeecCC
Q 013498 113 LGVDIIEAG--FPAA-SKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATS 187 (442)
Q Consensus 113 ~GV~~IEvG--~p~~-~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~e~l~~~g~~~v~i~~~~S 187 (442)
.+|+.|-+| -|.. .+++++ .++.+.+..+. .. . ..+.. .++.+.+ +..++.++.+|+.+|.+-+-..
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~--~~--~--~e~ti--e~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNF--AP--D--AEISI--EIDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCC--CC--C--CEEEE--EecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 457777774 4654 344543 44555443211 00 0 12222 2233333 2335566678999998865444
Q ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHcCCcEEeccC
Q 013498 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVGATTLNIPD 255 (442)
Q Consensus 188 d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~Gad~I~laD 255 (442)
+-.....+++. ...+.+.+.++.+++.|+..|.+.+.. -..-+.+.+.+.++.+.+.|++.|.+-.
T Consensus 173 ~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 173 DPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 44555566653 234566778899999998435544332 2345678888999999999999887764
No 224
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=92.21 E-value=12 Score=37.59 Aligned_cols=183 Identities=20% Similarity=0.268 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChh-H----HHHHHHHHHHhcccccccCCccceEe--eecccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKE-D----FEAVRTIAKEVGNAVDAESGYVPVIC--GLSRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~-d----~e~v~~l~~~~~~~~~~~~~l~~~i~--~~~r~~~~dI~~a~ 169 (442)
.++.+....+++.-.+.+.+.|=--+|..... . ...++.+++.. -+|... .++. ..+++.+|+
T Consensus 24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~---------~vPValHLDH~~-~~e~i~~ai 93 (287)
T PF01116_consen 24 VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEA---------SVPVALHLDHGK-DFEDIKRAI 93 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHS---------TSEEEEEEEEE--SHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHc---------CCCEEeecccCC-CHHHHHHHH
Confidence 46789999999999999999764433422111 1 12444444432 234332 2332 467778888
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE--Ec----cCC---------CCCCCHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE--FS----PED---------AGRSDRK 234 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~--f~----~ed---------asr~d~~ 234 (442)
++ |.+.|.+ .. | ..+.+|+++..++.+++|+..|.. |+ ++ .|| ...+||+
T Consensus 94 ~~----GftSVM~-Dg-S--------~l~~eeNi~~T~~vv~~ah~~gv~-VEaElG~i~g~ed~~~~~~~~~~~~TdP~ 158 (287)
T PF01116_consen 94 DA----GFTSVMI-DG-S--------ALPFEENIAITREVVEYAHAYGVS-VEAELGHIGGKEDGIESEEETESLYTDPE 158 (287)
T ss_dssp HH----TSSEEEE-E--T--------TS-HHHHHHHHHHHHHHHHHTT-E-EEEEESBSSSSCTTCSSSTT-TTCSSSHH
T ss_pred Hh----Ccccccc-cC-C--------cCCHHHHHHHHHHHHHhhhhhCCE-EEEEeeeeeccCCCccccccccccccCHH
Confidence 76 8888743 33 3 357889999999999999999984 54 22 122 2346888
Q ss_pred HHHHHHHHHHHcCCcEEecc--Ccccc--c--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCC
Q 013498 235 FLYEILGEVIKVGATTLNIP--DTVGI--T--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGAR 308 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~la--DT~G~--~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~ 308 (442)
...++++ +-|+|.+-++ -.=|. . .|.-=.++++.|++.+|+ +||.+| -.-|+.--.-..|+..|+.
T Consensus 159 ~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~---iPLVlH--GgSG~~~e~~~~ai~~Gi~ 230 (287)
T PF01116_consen 159 EAKEFVE---ETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPD---IPLVLH--GGSGLPDEQIRKAIKNGIS 230 (287)
T ss_dssp HHHHHHH---HHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHT---SEEEES--SCTTS-HHHHHHHHHTTEE
T ss_pred HHHHHHH---HhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCC---CCEEEE--CCCCCCHHHHHHHHHcCce
Confidence 7766554 5599975443 22233 2 555567888999988742 677755 4667777788999999998
Q ss_pred EEEe
Q 013498 309 QVEV 312 (442)
Q Consensus 309 ~vd~ 312 (442)
-|+.
T Consensus 231 KiNi 234 (287)
T PF01116_consen 231 KINI 234 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 225
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.20 E-value=1.1 Score=44.85 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHHcC-CcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVG-ATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 302 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~G-ad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaA 302 (442)
.++.|.+-+.++++.+.+.| ++.|.++-|+|= +++++-.++++...+...+ +++|-+|. +++.--++.-+..|
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKD--QIALIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCCHHHHHHHHHHH
Confidence 45899999999999999999 999999999875 8899999999988888765 57888885 88888899999999
Q ss_pred HHhCCCEEEecccccccccCcccHHHHHHHHHh
Q 013498 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (442)
Q Consensus 303 l~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~ 335 (442)
-++||+.|=..-- .--+ .+.|+++..++.
T Consensus 93 ~~~Gad~v~v~~P-~y~~---~~~~~i~~yf~~ 121 (290)
T TIGR00683 93 TELGYDCLSAVTP-FYYK---FSFPEIKHYYDT 121 (290)
T ss_pred HHhCCCEEEEeCC-cCCC---CCHHHHHHHHHH
Confidence 9999999877332 2211 234666665543
No 226
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.17 E-value=13 Score=36.86 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=112.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|+. .++.+++... +.++.+.+.+-.+.++.-.-.+
T Consensus 18 ~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-------~~~~vi~gv~~~~~~~~i~~a~ 90 (292)
T PRK03170 18 SVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-------GRVPVIAGTGSNSTAEAIELTK 90 (292)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-------CCCcEEeecCCchHHHHHHHHH
Confidence 488889999999999999998865 4 3455666654 5555666543 2245666666544444333334
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcCC
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~Ga 248 (442)
..+.+|++.+.+.-|.. +..+.++.++-..+.++. .++.-+-++... ....+++.+.++ .+. .
T Consensus 91 ~a~~~G~d~v~~~pP~~-------~~~~~~~i~~~~~~ia~~---~~~pv~lYn~P~~~g~~l~~~~~~~L----~~~-p 155 (292)
T PRK03170 91 FAEKAGADGALVVTPYY-------NKPTQEGLYQHFKAIAEA---TDLPIILYNVPGRTGVDILPETVARL----AEH-P 155 (292)
T ss_pred HHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEECccccCCCCCHHHHHHH----HcC-C
Confidence 44668999888765542 244666766666555543 245435555543 334566655554 232 5
Q ss_pred cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHH
Q 013498 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEE 328 (442)
Q Consensus 249 d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEe 328 (442)
..+.+.||.| .+..+.++++ ..++ +. .-+-+++.. + +..+..|++.. +.| .+|.-.+.
T Consensus 156 ~v~giK~s~~--d~~~~~~~~~----~~~~--~~-~v~~G~d~~-~-----~~~l~~G~~G~---is~----~~n~~P~~ 213 (292)
T PRK03170 156 NIVGIKEATG--DLERVSELIE----LVPD--DF-AVYSGDDAL-A-----LPFLALGGVGV---ISV----AANVAPKE 213 (292)
T ss_pred CEEEEEECCC--CHHHHHHHHH----hCCC--Ce-EEEECChHh-H-----HHHHHcCCCEE---EEh----HHhhhHHH
Confidence 7899999987 3455555443 2332 11 222333322 1 34577888664 222 34666666
Q ss_pred HHHHHHh
Q 013498 329 VVMAFKC 335 (442)
Q Consensus 329 vv~~L~~ 335 (442)
++...+.
T Consensus 214 ~~~l~~~ 220 (292)
T PRK03170 214 MAEMCDA 220 (292)
T ss_pred HHHHHHH
Confidence 6655544
No 227
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=92.13 E-value=9.9 Score=39.06 Aligned_cols=181 Identities=18% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc--CCCChhHH-----HHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKEDF-----EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d~-----e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
=+.++.+++|+.|.++|.+.+-.|. |..+|..| +-++.+.+..... ++ +.++ .-...++++...+
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~-----Gl-~v~t--ev~d~~~~~~l~~ 175 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREET-----GL-PIVT--EVMDPRDVELVAE 175 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHc-----CC-cEEE--eeCCHHHHHHHHH
Confidence 4889999999999999998766553 55555332 3344443322111 22 2222 2235666665544
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
. ++.+.+ +..+. +. .++++++-+.|.. |.+.- ..-.+++++...++.+...|-..
T Consensus 176 ~-----vd~lqI--gAr~~--------~N-------~~LL~~va~~~kP-ViLk~--G~~~ti~E~l~A~e~i~~~GN~~ 230 (335)
T PRK08673 176 Y-----VDILQI--GARNM--------QN-------FDLLKEVGKTNKP-VLLKR--GMSATIEEWLMAAEYILAEGNPN 230 (335)
T ss_pred h-----CCeEEE--Ccccc--------cC-------HHHHHHHHcCCCc-EEEeC--CCCCCHHHHHHHHHHHHHcCCCe
Confidence 2 455443 33221 11 1355566667875 76643 22346778888888898899988
Q ss_pred EeccCc-c-cc-cCHHHHH--HHHHHHHHhCCCCcceeE-EE--eecCCcchHHHHHHHHHHhCCC--EEEeccc
Q 013498 251 LNIPDT-V-GI-TMPTEFG--KLIADIKANTPGIENVVI-ST--HCQNDLGLSTANTIAGACAGAR--QVEVTIN 315 (442)
Q Consensus 251 I~laDT-~-G~-~~P~~v~--~li~~l~~~~p~~~~v~i-~~--H~HNDlGLA~ANalaAl~aGa~--~vd~Tv~ 315 (442)
+.|+.- + -. -.|...- ..+..+++.+. .|| .. |.=...-+...-+++|+.+||+ .|+.-..
T Consensus 231 viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~----lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 231 VILCERGIRTFETATRNTLDLSAVPVIKKLTH----LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred EEEEECCCCCCCCcChhhhhHHHHHHHHHhcC----CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 888883 1 22 1223332 34566676553 445 33 4333333456779999999999 7766554
No 228
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.13 E-value=1.1 Score=44.78 Aligned_cols=87 Identities=22% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G---~~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaAl 303 (442)
.+..|.+-+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+..++ +++|-+|. +++.--++.-+..|-
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNG--RVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCC--CCcEEeecCCchHHHHHHHHHHHH
Confidence 4578999999999999999999999999998 58889999999988887765 46666665 678888999999999
Q ss_pred HhCCCEEEecccc
Q 013498 304 CAGARQVEVTING 316 (442)
Q Consensus 304 ~aGa~~vd~Tv~G 316 (442)
++|++.|=..---
T Consensus 94 ~~G~d~v~~~pP~ 106 (292)
T PRK03170 94 KAGADGALVVTPY 106 (292)
T ss_pred HcCCCEEEECCCc
Confidence 9999998775443
No 229
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=92.04 E-value=14 Score=36.91 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC---hhH--HHHHHHHHHHhcccccccCCccceEeeeccc-chhhHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRC-NERDIKTAWE 170 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~~~dI~~a~e 170 (442)
.++.++...+.+.-.+.+.+.|=-.+|... +.+ ...++.+++.. -+|+..=+=-+ +.+.++.+++
T Consensus 25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~---------~vpv~lHlDH~~~~e~i~~Al~ 95 (281)
T PRK06806 25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA---------KVPVAVHFDHGMTFEKIKEALE 95 (281)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC---------CCCEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999997754445332 222 13444444431 23433222222 3445555555
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE-----Ec-cCC------CCCCCHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE-----FS-PED------AGRSDRKFLYE 238 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~-----f~-~ed------asr~d~~~l~~ 238 (442)
. |++.|.+=.+ ..+.+|+++..++++++++..|.. |+ ++ -++ .+-++++.+.+
T Consensus 96 ~----G~tsVm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~-veaE~ghlG~~d~~~~~~g~s~t~~eea~~ 160 (281)
T PRK06806 96 I----GFTSVMFDGS----------HLPLEENIQKTKEIVELAKQYGAT-VEAEIGRVGGSEDGSEDIEMLLTSTTEAKR 160 (281)
T ss_pred c----CCCEEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCe-EEEEeeeECCccCCcccccceeCCHHHHHH
Confidence 3 8887765222 346789999999999999999974 32 33 122 23467776655
Q ss_pred HHHHHHHcCCcEEec--cCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 239 ILGEVIKVGATTLNI--PDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 239 ~~~~~~~~Gad~I~l--aDT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
.++ +.|+|.+.+ .-..|.- .|.--.++++.+++.++ +|+..|+ .-|.-..|...++++|++.|++.
T Consensus 161 f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~----iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~ 230 (281)
T PRK06806 161 FAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH----IPLVLHG--GSGISPEDFKKCIQHGIRKINVA 230 (281)
T ss_pred HHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC----CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEh
Confidence 443 469998877 4444432 23334567888888763 6787665 44788899999999999998764
No 230
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=92.02 E-value=4.1 Score=39.86 Aligned_cols=96 Identities=21% Similarity=0.337 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc-cccCH-HHHH-HHHHHHHHhCCCCcceeEE
Q 013498 209 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-GITMP-TEFG-KLIADIKANTPGIENVVIS 285 (442)
Q Consensus 209 ~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~-G~~~P-~~v~-~li~~l~~~~p~~~~v~i~ 285 (442)
+++++.+.|.+ |.++ ++.++.+++.+.++.+.+.|..-|.|-=.+ ++=+| +++. ..|..|++.++ ++||
T Consensus 105 lL~~~A~tgkP-vIlS---TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~----~~vG 176 (241)
T PF03102_consen 105 LLEYIAKTGKP-VILS---TGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG----VPVG 176 (241)
T ss_dssp HHHHHHTT-S--EEEE----TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST----SEEE
T ss_pred HHHHHHHhCCc-EEEE---CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC----CCEE
Confidence 44555555554 4443 344555666666665555554433333222 22222 2221 45788899996 7899
Q ss_pred EeecCCcchHHHHHHHHHHhCCCEE--Eeccc
Q 013498 286 THCQNDLGLSTANTIAGACAGARQV--EVTIN 315 (442)
Q Consensus 286 ~H~HNDlGLA~ANalaAl~aGa~~v--d~Tv~ 315 (442)
+=-|-. |. .-.++|+..||..| |.|+.
T Consensus 177 ~SDHt~-g~--~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 177 YSDHTD-GI--EAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp EEE-SS-SS--HHHHHHHHTT-SEEEEEB-S-
T ss_pred eCCCCC-Cc--HHHHHHHHcCCeEEEEEEECC
Confidence 999987 54 45789999999998 45554
No 231
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.00 E-value=1.2 Score=44.45 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~ 304 (442)
..+.|.+-+.++++.+.+.|++.|.+.-|+|= ++.++-.++++.+.+...+ +++|-+|.-.+..-++..+..|-+
T Consensus 15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~--~~pvi~gv~~~t~~~i~~a~~a~~ 92 (289)
T cd00951 15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG--RVPVLAGAGYGTATAIAYAQAAEK 92 (289)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCCEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 7788888888888887654 355666655477778888889999
Q ss_pred hCCCEEEec
Q 013498 305 AGARQVEVT 313 (442)
Q Consensus 305 aGa~~vd~T 313 (442)
+||+.+=..
T Consensus 93 ~Gad~v~~~ 101 (289)
T cd00951 93 AGADGILLL 101 (289)
T ss_pred hCCCEEEEC
Confidence 999998553
No 232
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=91.98 E-value=2.8 Score=44.65 Aligned_cols=133 Identities=14% Similarity=0.177 Sum_probs=79.7
Q ss_pred cCCCEEEEc--cCCC-ChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhH-HHHHHHHHhCCCCEEEEeecCC
Q 013498 113 LGVDIIEAG--FPAA-SKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATS 187 (442)
Q Consensus 113 ~GV~~IEvG--~p~~-~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~e~l~~~g~~~v~i~~~~S 187 (442)
.+|..|-+| -|.. .++++ +.++.+.+..+.. . . ..+..- ++...+ +..++.++.+|+.+|.+-+-..
T Consensus 102 ~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~--~--~--~e~tie--~~p~~lt~e~l~~L~~~G~~rvsiGvQS~ 173 (453)
T PRK13347 102 RRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFA--P--E--AEIAVE--IDPRTVTAEMLQALAALGFNRASFGVQDF 173 (453)
T ss_pred CeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCC--C--C--ceEEEE--eccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 356667664 4653 34454 3455555542211 0 0 122222 234333 2345666778999998866555
Q ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcEEeccC
Q 013498 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPD 255 (442)
Q Consensus 188 d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~I~laD 255 (442)
+-.....+|+. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.+++.|.+-.
T Consensus 174 ~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 174 DPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred CHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 55666677663 2345667789999999986444433211 335678888999999999999887654
No 233
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.81 E-value=2.7 Score=42.96 Aligned_cols=133 Identities=12% Similarity=0.126 Sum_probs=82.7
Q ss_pred HHHHHHhCCCCEEEEeecC--------ChH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCCC--CCC
Q 013498 168 AWEAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRS 231 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~--------Sd~--h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~eda--sr~ 231 (442)
|.+..+.+|.|.|.+..+- |+. +...++|=|.++-.+-..+.++.+|+. |-. .|.++.++. .-.
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~ 233 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGF 233 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCC
Confidence 3344567899999887663 554 444567778888888888888888865 422 234444321 124
Q ss_pred CHHHHHHHHHHHHHcCCcEEeccCcccccC---------------HHHHHHHHHHHHHhCCCCcceeEEE-eecCCcchH
Q 013498 232 DRKFLYEILGEVIKVGATTLNIPDTVGITM---------------PTEFGKLIADIKANTPGIENVVIST-HCQNDLGLS 295 (442)
Q Consensus 232 d~~~l~~~~~~~~~~Gad~I~laDT~G~~~---------------P~~v~~li~~l~~~~p~~~~v~i~~-H~HNDlGLA 295 (442)
+++...++++.+.++|+|.|.+.. |... +.-..++.+.+|+.++ +||.. -..+ .
T Consensus 234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i~----t 303 (338)
T cd04733 234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK----TPLMVTGGFR----T 303 (338)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcC----CCEEEeCCCC----C
Confidence 678889999999999999998642 2110 1112466677887763 44433 1111 3
Q ss_pred HHHHHHHHHhC-CCEE
Q 013498 296 TANTIAGACAG-ARQV 310 (442)
Q Consensus 296 ~ANalaAl~aG-a~~v 310 (442)
...+..+++.| ||.|
T Consensus 304 ~~~a~~~l~~g~aD~V 319 (338)
T cd04733 304 RAAMEQALASGAVDGI 319 (338)
T ss_pred HHHHHHHHHcCCCCee
Confidence 45667777776 5655
No 234
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.81 E-value=7.5 Score=38.42 Aligned_cols=113 Identities=17% Similarity=0.209 Sum_probs=71.7
Q ss_pred ceEeeeccc-chhhHHHHHHHHHhCCCCEEEEeec-CChHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEccCCC
Q 013498 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDA 228 (442)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~e~l~~~g~~~v~i~~~-~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~-~G~~~V~f~~eda 228 (442)
|.+.--+.. ..+|++.|++.+...|.+.|.+.-. +|... ...+.. + ++ ..+...|+ .++. |.|.+ +-
T Consensus 134 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~-----~~~~~~-~-dl-~~i~~lk~~~~~p-V~~ds-~H 203 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFE-----KATRNT-L-DL-SAVPVLKKETHLP-IIVDP-SH 203 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCC-----CCCcCC-c-CH-HHHHHHHHhhCCC-EEEcC-CC
Confidence 445444434 7899999999988888877766542 43210 111111 1 11 22333343 4775 77743 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEe----------ccCcccccCHHHHHHHHHHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLN----------IPDTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~----------laDT~G~~~P~~v~~li~~l~~ 274 (442)
+--..+++..++..++.+||+.|. ++|-.=.+.|.++.++++.+++
T Consensus 204 s~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 204 AAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred CCCccchHHHHHHHHHHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHhh
Confidence 223347788888999999999432 3888899999999999999875
No 235
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=91.81 E-value=7.9 Score=39.67 Aligned_cols=139 Identities=20% Similarity=0.249 Sum_probs=84.2
Q ss_pred HHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC--EEEEeec
Q 013498 108 RQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP--RIHTFIA 185 (442)
Q Consensus 108 ~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~--~v~i~~~ 185 (442)
+.|.+.|++.+-+|+.- -.++.+++.+++.. .|.|..-+.++.++|+.|++.++..|.+ .|.+.-+
T Consensus 103 d~l~~~~v~~~KIaS~~--~~n~pLL~~~A~~g----------kPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC 170 (329)
T TIGR03569 103 DFLEDLGVPRFKIPSGE--ITNAPLLKKIARFG----------KPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHC 170 (329)
T ss_pred HHHHhcCCCEEEECccc--ccCHHHHHHHHhcC----------CcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEE
Confidence 33344444555554332 23577888887742 2667666677999999999999887875 3555444
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe--------c--c
Q 013498 186 TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN--------I--P 254 (442)
Q Consensus 186 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~-~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~--------l--a 254 (442)
+|. +-..+++ ++ ...+...++ .++. |.++ | .+. . ..+...++..||+.|- + +
T Consensus 171 ~s~------YP~~~~~-~n--L~~I~~Lk~~f~~p-VG~S--d--Ht~-G--~~~~~aAvalGA~iIEkH~tldk~~~G~ 233 (329)
T TIGR03569 171 TTE------YPAPFED-VN--LNAMDTLKEAFDLP-VGYS--D--HTL-G--IEAPIAAVALGATVIEKHFTLDKNLPGP 233 (329)
T ss_pred CCC------CCCCccc-CC--HHHHHHHHHHhCCC-EEEC--C--CCc-c--HHHHHHHHHcCCCEEEeCCChhhcCCCC
Confidence 442 1222221 11 134444454 3443 5553 2 222 2 2566777788998653 3 5
Q ss_pred CcccccCHHHHHHHHHHHHHh
Q 013498 255 DTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 255 DT~G~~~P~~v~~li~~l~~~ 275 (442)
|..=.+.|.++.++++.+++.
T Consensus 234 D~~~Sl~p~el~~lv~~ir~~ 254 (329)
T TIGR03569 234 DHKASLEPDELKEMVQGIRNV 254 (329)
T ss_pred ChhhcCCHHHHHHHHHHHHHH
Confidence 777779999999999999874
No 236
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.63 E-value=3.2 Score=41.18 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhC
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANT 276 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~ 276 (442)
...++++.+++ . .+.+. .+|-+.-.+..+.+.++..| ..|+.|.|++-+-.=+ .+..-++.+|+.+
T Consensus 106 ~t~~~v~~a~~--~-~~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~g~i~~~v~~~r~~~ 179 (268)
T cd01572 106 LTRRYVEALAG--T-KARIL---DTRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLIKDNHIAAAGSITEAVRRARAAA 179 (268)
T ss_pred HHHHHHHHhCC--C-CEEEE---eCCCCChhhHHHHHHHHHhCCCccccCCCcceeeeehHHHHHhCCHHHHHHHHHHhC
Confidence 44566666654 2 24443 24666566878888777775 3588888877442221 1345678888888
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHH
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 356 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~l 356 (442)
|. +..|++=+|| +.-+..|+++|||+|-. ||...|++-............-.--||+++.+.++
T Consensus 180 ~~--~~~Igvev~s-----~eea~~A~~~gaDyI~l---------d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~ 243 (268)
T cd01572 180 PF--TLKIEVEVET-----LEQLKEALEAGADIIML---------DNMSPEELREAVALLKGRVLLEASGGITLENIRAY 243 (268)
T ss_pred CC--CCeEEEEECC-----HHHHHHHHHcCCCEEEE---------CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHH
Confidence 74 3567888887 56678899999999854 57778888776664421111122348999999777
Q ss_pred HH
Q 013498 357 SK 358 (442)
Q Consensus 357 s~ 358 (442)
++
T Consensus 244 a~ 245 (268)
T cd01572 244 AE 245 (268)
T ss_pred HH
Confidence 63
No 237
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=91.57 E-value=17 Score=38.79 Aligned_cols=124 Identities=19% Similarity=0.298 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHH-----hHcC----CCEEEEccCCCChhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhHHH
Q 013498 98 LTSKEKLDIARQL-----AKLG----VDIIEAGFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (442)
Q Consensus 98 fs~e~kl~ia~~L-----~~~G----V~~IEvG~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (442)
++.++..+-++.+ .+.| .|.|-+|+....++.+ +.++.+.+... .| ++-.+ .+.+-++.
T Consensus 102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~d---------vP-LSIDT-~dpevlea 170 (450)
T PRK04165 102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTD---------LP-LILCS-EDPAVLKA 170 (450)
T ss_pred CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcC---------CC-EEEeC-CCHHHHHH
Confidence 5666666666666 5666 9999999986666543 45666554321 12 22222 46777788
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
++++ +.+...+..+.+. +++.++++.+++.|.. |.+..++ .+++.++++.+.++|
T Consensus 171 Alea----gad~~plI~Sat~---------------dN~~~m~~la~~yg~p-vVv~~~d-----l~~L~~lv~~~~~~G 225 (450)
T PRK04165 171 ALEV----VADRKPLLYAATK---------------ENYEEMAELAKEYNCP-LVVKAPN-----LEELKELVEKLQAAG 225 (450)
T ss_pred HHHh----cCCCCceEEecCc---------------chHHHHHHHHHHcCCc-EEEEchh-----HHHHHHHHHHHHHcC
Confidence 8776 5555545545441 3445677778888885 5554432 789999999999999
Q ss_pred CcEEeccCccc
Q 013498 248 ATTLNIPDTVG 258 (442)
Q Consensus 248 ad~I~laDT~G 258 (442)
.+.|.| |...
T Consensus 226 I~dIIL-DPg~ 235 (450)
T PRK04165 226 IKDLVL-DPGT 235 (450)
T ss_pred CCcEEE-CCCC
Confidence 977776 5543
No 238
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=91.56 E-value=11 Score=35.81 Aligned_cols=163 Identities=14% Similarity=0.009 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee----------ecccchhhHHHH
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG----------LSRCNERDIKTA 168 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~----------~~r~~~~dI~~a 168 (442)
+.++-.++++...+.|...++++. + +.++.+.+... .|.+.- +.....++++.+
T Consensus 21 ~~~~~~~~a~a~~~~G~~~~~~~~----~---~~i~~i~~~~~---------~Pil~~~~~d~~~~~~~~~~~~~~v~~a 84 (221)
T PRK01130 21 SPEIMAAMALAAVQGGAVGIRANG----V---EDIKAIRAVVD---------VPIIGIIKRDYPDSEVYITPTLKEVDAL 84 (221)
T ss_pred CHHHHHHHHHHHHHCCCeEEEcCC----H---HHHHHHHHhCC---------CCEEEEEecCCCCCCceECCCHHHHHHH
Confidence 567889999999999999999852 3 45555544321 122110 111123455555
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~-~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
.+ +|++.|.+-.+..+ ++. -+.+.++++.+++ .|+. +.... .+++++ +.+.++|
T Consensus 85 ~~----aGad~I~~d~~~~~---------~p~--~~~~~~~i~~~~~~~~i~-vi~~v-----~t~ee~----~~a~~~G 139 (221)
T PRK01130 85 AA----AGADIIALDATLRP---------RPD--GETLAELVKRIKEYPGQL-LMADC-----STLEEG----LAAQKLG 139 (221)
T ss_pred HH----cCCCEEEEeCCCCC---------CCC--CCCHHHHHHHHHhCCCCe-EEEeC-----CCHHHH----HHHHHcC
Confidence 44 58886554333210 000 0233467778888 6653 33222 234433 5678899
Q ss_pred CcEEecc--Ccccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHHHhCCCEE
Q 013498 248 ATTLNIP--DTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAGARQV 310 (442)
Q Consensus 248 ad~I~la--DT~G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA-~ANalaAl~aGa~~v 310 (442)
+|.|.+. +..|. .......++++.+++.+. +++-. ..|.. ..+...++++||+.|
T Consensus 140 ~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~----iPvia----~GGI~t~~~~~~~l~~GadgV 199 (221)
T PRK01130 140 FDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG----CPVIA----EGRINTPEQAKKALELGAHAV 199 (221)
T ss_pred CCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC----CCEEE----ECCCCCHHHHHHHHHCCCCEE
Confidence 9988652 22221 111123467788887752 34443 46774 578888889998876
No 239
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=91.51 E-value=3.2 Score=41.83 Aligned_cols=110 Identities=14% Similarity=0.113 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc-----------ccCHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEF 265 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G-----------~~~P~~v 265 (442)
.+.+|.++.+.++++. ..++ |...+++++-.+++ +.+.++.+.++|+..|.|-|.++ ...++++
T Consensus 60 l~~~e~~~~~~~I~~~---~~lP-v~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~ 134 (294)
T TIGR02319 60 TSVSEQAINAKNIVLA---VDVP-VIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEM 134 (294)
T ss_pred CCHHHHHHHHHHHHhc---cCCC-EEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHH
Confidence 3567777766655443 3455 88888665555555 88999999999999999999873 3566777
Q ss_pred HHHHHHHHHhCCCCcceeEEEe----ecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 266 GKLIADIKANTPGIENVVISTH----CQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 266 ~~li~~l~~~~p~~~~v~i~~H----~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.+.|+..++.-.+. +..|-.- ...++--|+.-+.+..++|||.|=.
T Consensus 135 ~~kI~Aa~~A~~~~-d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi 184 (294)
T TIGR02319 135 TGKIEAAVEAREDE-DFTIIARTDARESFGLDEAIRRSREYVAAGADCIFL 184 (294)
T ss_pred HHHHHHHHHhccCC-CeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEe
Confidence 77777777643321 2333221 2234556777888888999998743
No 240
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.50 E-value=17 Score=36.58 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=113.5
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.+..+.-.++++.|.+.||+-|=+ | |+..+.+|+. .++..++... +.+|.|++.+. +.++ ++.+
T Consensus 24 ~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-------~~~pvi~gv~~-~t~~~i~~~- 94 (303)
T PRK03620 24 SFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-------GRVPVIAGAGG-GTAQAIEYA- 94 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-------CCCcEEEecCC-CHHHHHHHH-
Confidence 478888999999999999998866 4 3556666654 5555555542 23467777664 4333 4433
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad 249 (442)
+....+|++.+.+.-|.. ++.+.++..+-..+.++. .++.-+-++. .....+++.+.++++ + -..
T Consensus 95 ~~a~~~Gadav~~~pP~y-------~~~~~~~i~~~f~~va~~---~~lpi~lYn~-~g~~l~~~~l~~L~~---~-~pn 159 (303)
T PRK03620 95 QAAERAGADGILLLPPYL-------TEAPQEGLAAHVEAVCKS---TDLGVIVYNR-DNAVLTADTLARLAE---R-CPN 159 (303)
T ss_pred HHHHHhCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHh---CCCCEEEEcC-CCCCCCHHHHHHHHh---h-CCC
Confidence 334567999887654431 234666666555555443 3454344553 233456665555442 2 248
Q ss_pred EEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHH
Q 013498 250 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEV 329 (442)
Q Consensus 250 ~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEev 329 (442)
.+.+.||.| .+..+.++++.. ++ +.. -+-+++. .-...+.++.+|++.. +.| .+|...|.+
T Consensus 160 i~giK~s~~--d~~~~~~~~~~~----~~--~f~-vl~G~d~---~e~~~~~~~~~G~~G~---is~----~an~~P~~~ 220 (303)
T PRK03620 160 LVGFKDGVG--DIELMQRIVRAL----GD--RLL-YLGGLPT---AEVFAAAYLALGVPTY---SSA----VFNFVPEIA 220 (303)
T ss_pred EEEEEeCCC--CHHHHHHHHHHc----CC--CeE-EEeCCCc---chhhHHHHHhCCCCEE---Eec----HHhhhHHHH
Confidence 899999977 467777766443 32 111 2233321 1112356677888643 332 457777777
Q ss_pred HHHHHh
Q 013498 330 VMAFKC 335 (442)
Q Consensus 330 v~~L~~ 335 (442)
+...+.
T Consensus 221 ~~l~~~ 226 (303)
T PRK03620 221 LAFYRA 226 (303)
T ss_pred HHHHHH
Confidence 666554
No 241
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=91.46 E-value=4.8 Score=41.30 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=76.9
Q ss_pred CCCEEEEc--cCCC-ChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhH-HHHHHHHHhCCCCEEEEeecCCh
Q 013498 114 GVDIIEAG--FPAA-SKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-KTAWEAVKYAKRPRIHTFIATSG 188 (442)
Q Consensus 114 GV~~IEvG--~p~~-~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~~a~e~l~~~g~~~v~i~~~~Sd 188 (442)
+++.|-+| -|.. +++..+ .+..+.+.... . ..++.- ++++.+ +.-++.++.+|+.+|.+-+=..+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~------~--~eitiE--~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~ 120 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSK------D--CEITTE--ANPNSATKAWLKGMKNLGVNRISFGVQSFN 120 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCC------C--ceEEEE--eCCCCCCHHHHHHHHHcCCCEEEEecccCC
Confidence 68888875 5753 444443 33444433111 0 123322 234433 22355667789999988554444
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 189 ~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
-...+.+|+. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.|++.|.+
T Consensus 121 ~~~L~~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 121 EDKLKFLGRI--HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 4555667752 2245667789999999986454444322 2356788889999999999998765
No 242
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.45 E-value=4.4 Score=41.61 Aligned_cols=132 Identities=16% Similarity=0.146 Sum_probs=80.6
Q ss_pred HHHHhCCCCEEEEeec--------CCh--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCCC--CCCCH
Q 013498 170 EAVKYAKRPRIHTFIA--------TSG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSDR 233 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~--------~Sd--~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~eda--sr~d~ 233 (442)
+..+.+|.|.|.+..+ .|+ .+...++|=+.+.-.+.+.+.++.+|+. |.+ .+.++..|. ...++
T Consensus 144 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~ 223 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCH
Confidence 3346689999988653 133 2445566767787788888888888885 543 244555443 23578
Q ss_pred HHHHHHHHHHHHcCCcEEeccCccccc---C-------HH-HHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGIT---M-------PT-EFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~---~-------P~-~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
+...++++.+.++|+|.|.+ |.|.. . |. ....+.+.+++.++ +||..-.--. ....+..+
T Consensus 224 ~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~----iPVi~~G~i~---~~~~a~~~ 294 (353)
T cd02930 224 EEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD----IPVIASNRIN---TPEVAERL 294 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC----CCEEEcCCCC---CHHHHHHH
Confidence 88999999999999999987 33321 1 11 13445667777763 4555432211 13445556
Q ss_pred HHhC-CCEE
Q 013498 303 ACAG-ARQV 310 (442)
Q Consensus 303 l~aG-a~~v 310 (442)
++.| +|.|
T Consensus 295 i~~g~~D~V 303 (353)
T cd02930 295 LADGDADMV 303 (353)
T ss_pred HHCCCCChh
Confidence 6655 4433
No 243
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.45 E-value=4.9 Score=42.26 Aligned_cols=164 Identities=21% Similarity=0.154 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHhHcCCCEEEE--ccCC-CCh--------hHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHH
Q 013498 99 TSKEKLDIARQLAKLGVDIIEA--GFPA-ASK--------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT 167 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEv--G~p~-~~~--------~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~ 167 (442)
+.++-.++++.+.++|+|.||+ +.|. ... ++.+.+.++.+.+...+ -.|.++-+ +.+..++..
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-----~~Pv~vKl-~p~~~~~~~ 184 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-----RLPVIVKL-TPNITDIRE 184 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-----CCcEEEEc-CCCcccHHH
Confidence 5788899999999999999998 5564 111 34556666665543321 13444333 345556666
Q ss_pred HHHHHHhCCCCEEEEeecCCh--------------HHHHHHh-CCCHHHHHHHHHHHHHHHHHc----CCCeEEEccCCC
Q 013498 168 AWEAVKYAKRPRIHTFIATSG--------------IHMEHKL-RKTKQQVVEIARSMVKFARSL----GCDDVEFSPEDA 228 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd--------------~h~~~~l-~~s~~e~l~~~~~~v~~ar~~----G~~~V~f~~eda 228 (442)
..+.+..+|++.|.++..+.. +|-.... +.|=........+.|..+++. .+. | ++. +
T Consensus 185 ~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ip-I-ig~--G 260 (420)
T PRK08318 185 PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLP-I-SGI--G 260 (420)
T ss_pred HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCC-E-Eee--c
Confidence 666667789998876544432 1111111 234444444455666666654 233 2 221 3
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhC
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
+=.+.+.+.+++ .+||+.|.++=-.-.--|.-+.++++.|.+.+
T Consensus 261 GI~s~~da~e~i----~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l 304 (420)
T PRK08318 261 GIETWRDAAEFI----LLGAGTVQVCTAAMQYGFRIVEDMISGLSHYM 304 (420)
T ss_pred CcCCHHHHHHHH----HhCCChheeeeeeccCCchhHHHHHHHHHHHH
Confidence 345556555554 38999999986665556888888888875543
No 244
>PRK05481 lipoyl synthase; Provisional
Probab=91.41 E-value=5.3 Score=39.99 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc------CCCChhH-HHHHHHHHHHhcccccccCCccceEeeeccc---chhhH
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF------PAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDI 165 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~------p~~~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI 165 (442)
..++.++.++.++.+.+.|+++|-+-. |....+. .+.++.|.+..+. . .|-.+... ..+++
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~-------i--rI~~l~~~~~~~~e~L 148 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPG-------T--TIEVLIPDFRGRMDAL 148 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCC-------c--EEEEEccCCCCCHHHH
Confidence 458999999999999999999887742 1111111 2344444442211 1 22222221 12333
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEccCCCCCCCHHHHHHHHHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~--G~~~V~f~~edasr~d~~~l~~~~~~~ 243 (442)
.. ++.+|...+..+.-+|+ .+..+++.. ...+...+.++.+++. |+. +.-++.-+.--+.+...+.++.+
T Consensus 149 ~~----l~~ag~~i~~~~~ets~-~vlk~m~r~--~t~e~~le~i~~ar~~~pgi~-~~t~~IvGfGET~ed~~~tl~~l 220 (289)
T PRK05481 149 LT----VLDARPDVFNHNLETVP-RLYKRVRPG--ADYERSLELLKRAKELHPGIP-TKSGLMVGLGETDEEVLEVMDDL 220 (289)
T ss_pred HH----HHhcCcceeeccccChH-HHHHHhCCC--CCHHHHHHHHHHHHHhCCCCe-EeeeeEEECCCCHHHHHHHHHHH
Confidence 33 34457777666555554 344555531 2234455788889999 874 33222111122457777899999
Q ss_pred HHcCCcEEec
Q 013498 244 IKVGATTLNI 253 (442)
Q Consensus 244 ~~~Gad~I~l 253 (442)
.+.+.+.+.+
T Consensus 221 rel~~d~v~i 230 (289)
T PRK05481 221 RAAGVDILTI 230 (289)
T ss_pred HhcCCCEEEE
Confidence 9999988766
No 245
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=91.39 E-value=5.2 Score=39.71 Aligned_cols=100 Identities=16% Similarity=0.067 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~ 246 (442)
+-++.+...|++.+.+.-++++. ..+|.+|-.+.+..+++.++.. . .|.++. +..+.+...++++.+.++
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~-----~~Lt~~Er~~l~~~~~~~~~~~-~-~vi~gv---~~~st~~~i~~a~~a~~~ 95 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEF-----YSLTDEERKELLEIVVEAAAGR-V-PVIAGV---GANSTEEAIELARHAQDA 95 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTG-----GGS-HHHHHHHHHHHHHHHTTS-S-EEEEEE---ESSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHHHHHHccCc-e-EEEecC---cchhHHHHHHHHHHHhhc
Confidence 33444444556655555555542 2345555554444444443322 2 233332 233445555666666666
Q ss_pred CCcEEe-ccCcccccCHHHHHHHHHHHHHhC
Q 013498 247 GATTLN-IPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 247 Gad~I~-laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
|+|.+. ++=.....+++++.+.++.+.+..
T Consensus 96 Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~ 126 (289)
T PF00701_consen 96 GADAVLVIPPYYFKPSQEELIDYFRAIADAT 126 (289)
T ss_dssp T-SEEEEEESTSSSCCHHHHHHHHHHHHHHS
T ss_pred CceEEEEeccccccchhhHHHHHHHHHHhhc
Confidence 666443 223334455566666666655543
No 246
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.39 E-value=1.5 Score=44.07 Aligned_cols=83 Identities=20% Similarity=0.224 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~ 304 (442)
.++.|.+-+.++++.+.+.|++.|.+.-|+|- +++++-.++++.+.+...+ +++|-+|.-.+..-++..+..|-+
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~--~~pvi~gv~~~t~~~i~~~~~a~~ 99 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAG--RVPVIAGAGGGTAQAIEYAQAAER 99 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999984 8899999999988887765 355655554466677778888999
Q ss_pred hCCCEEEe
Q 013498 305 AGARQVEV 312 (442)
Q Consensus 305 aGa~~vd~ 312 (442)
+||+.+-.
T Consensus 100 ~Gadav~~ 107 (303)
T PRK03620 100 AGADGILL 107 (303)
T ss_pred hCCCEEEE
Confidence 99999854
No 247
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=91.34 E-value=5.1 Score=38.84 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=83.7
Q ss_pred HHHHHHHhHcCCCEEEEccCCCCh------------hH-HHHHHHHHHHhcccccccCCccc-eEeeecccchhhHHHHH
Q 013498 104 LDIARQLAKLGVDIIEAGFPAASK------------ED-FEAVRTIAKEVGNAVDAESGYVP-VICGLSRCNERDIKTAW 169 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~p~~~~------------~d-~e~v~~l~~~~~~~~~~~~~l~~-~i~~~~r~~~~dI~~a~ 169 (442)
-.+++.|.+.+||.+-.-|.+... +| ...++.|.+. +. ..+| .+.|+.--....=..|+
T Consensus 100 E~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~-~i------rvvpHitiGL~~gki~~e~kaI 172 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKEN-GI------RVVPHITIGLDFGKIHGEFKAI 172 (275)
T ss_pred HHHHHHHHHhcCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHHHHHc-Cc------eeceeEEEEeccCcccchHHHH
Confidence 567788888999988887643321 11 1233333332 11 1233 23455433333334577
Q ss_pred HHHHhCCCCE--EEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPR--IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~--v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
+.+.....|. +..++|+--. +++.++.--.+.+...++|||+.-...|.++++. ---++.+++=+.+..+|
T Consensus 173 diL~~~~~DalVl~vliPtpGt----km~~~~pp~~eE~i~v~~~AR~~f~~pv~iGCmr---P~Ge~rvk~d~~av~~g 245 (275)
T COG1856 173 DILVNYEPDALVLVVLIPTPGT----KMGNSPPPPVEEAIKVVKYARKKFPNPVSIGCMR---PRGEWRVKLDKEAVLAG 245 (275)
T ss_pred HHHhcCCCCeEEEEEEecCCch----hccCCCCcCHHHHHHHHHHHHHhCCCCeeEeecC---cCchhHHHHHHHHHHcC
Confidence 7776656664 4567887764 4555554555667789999999854348888853 22356678888899999
Q ss_pred CcEEecc
Q 013498 248 ATTLNIP 254 (442)
Q Consensus 248 ad~I~la 254 (442)
+|+|.++
T Consensus 246 Vd~It~P 252 (275)
T COG1856 246 VDRITFP 252 (275)
T ss_pred CceeecC
Confidence 9999875
No 248
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=91.34 E-value=18 Score=36.71 Aligned_cols=163 Identities=13% Similarity=0.122 Sum_probs=97.6
Q ss_pred CCCCHHHHHHHHHHHhH-cCCCEEEE--ccCCCC-hhH-HHHHHHHHHHhcccccccCCccceEeeeccc---chhhH-H
Q 013498 96 ATLTSKEKLDIARQLAK-LGVDIIEA--GFPAAS-KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDI-K 166 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~-~GV~~IEv--G~p~~~-~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI-~ 166 (442)
..++.++..++++.|.+ .||..|-+ |-|-.. ..+ .+.++.+.+. +. +..+.-.+|. +..-+ +
T Consensus 117 ~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i-~~--------v~~iri~Tr~~v~~p~rit~ 187 (321)
T TIGR03822 117 GVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAI-DH--------VKIVRFHTRVPVADPARVTP 187 (321)
T ss_pred CcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhC-CC--------ccEEEEeCCCcccChhhcCH
Confidence 34688888888988874 48887666 556543 233 3455555542 11 1111111221 11111 1
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc--cCCCCCCCHHHHHHHHHHHH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS--PEDAGRSDRKFLYEILGEVI 244 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~--~edasr~d~~~l~~~~~~~~ 244 (442)
..++.++..|.. +.+.+-.+ | ..+..+.+.++++.+++.|+. |... .-..-..+.+.+.++.+.+.
T Consensus 188 ell~~L~~~g~~-v~i~l~~~--h--------~~el~~~~~~ai~~L~~~Gi~-v~~q~vLl~gvNd~~~~l~~l~~~l~ 255 (321)
T TIGR03822 188 ALIAALKTSGKT-VYVALHAN--H--------ARELTAEARAACARLIDAGIP-MVSQSVLLRGVNDDPETLAALMRAFV 255 (321)
T ss_pred HHHHHHHHcCCc-EEEEecCC--C--------hhhcCHHHHHHHHHHHHcCCE-EEEEeeEeCCCCCCHHHHHHHHHHHH
Confidence 223444555643 33332222 2 223347788999999999985 4332 22233466788999999999
Q ss_pred HcCCcE--EeccCcc-cc----cCHHHHHHHHHHHHHhCCCC
Q 013498 245 KVGATT--LNIPDTV-GI----TMPTEFGKLIADIKANTPGI 279 (442)
Q Consensus 245 ~~Gad~--I~laDT~-G~----~~P~~v~~li~~l~~~~p~~ 279 (442)
+.|++. +...|.+ |. ..+++..+++..+++.+++.
T Consensus 256 ~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g~ 297 (321)
T TIGR03822 256 ECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISGL 297 (321)
T ss_pred hcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 999874 5567777 33 56778899999999998874
No 249
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.32 E-value=3.1 Score=41.38 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCcEEec----------cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 231 SDRKFLYEILGEVIKVGATTLNI----------PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~l----------aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
.+++.+.+.++.+.++|+|.|-| .|..| ..|..+.++++.+++.+. ++|.+-.--+..-...-+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~~----~Pv~vKl~~~~~~~~~~a~ 173 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKATD----VPVIVKLTPNVTDIVEIAR 173 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhccC----CCEEEEeCCCchhHHHHHH
Confidence 35788889999999999998766 12222 578999999999999862 5677665444333444456
Q ss_pred HHHHhCCCEEEe
Q 013498 301 AGACAGARQVEV 312 (442)
Q Consensus 301 aAl~aGa~~vd~ 312 (442)
.+.++|++.|+.
T Consensus 174 ~~~~~G~d~i~~ 185 (296)
T cd04740 174 AAEEAGADGLTL 185 (296)
T ss_pred HHHHcCCCEEEE
Confidence 678899998854
No 250
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=91.31 E-value=2.6 Score=44.02 Aligned_cols=122 Identities=13% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHcCCCEEEEc----cCCCChh-H----HHHHHHHHHHhcccccccCCccceEe--------eecccch-
Q 013498 101 KEKLDIARQLAKLGVDIIEAG----FPAASKE-D----FEAVRTIAKEVGNAVDAESGYVPVIC--------GLSRCNE- 162 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG----~p~~~~~-d----~e~v~~l~~~~~~~~~~~~~l~~~i~--------~~~r~~~- 162 (442)
.+-.+.++.|.++|++.||+- +|...+. + .+.++...+..+-.+.. ..+++. +++-..+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~---v~~nl~~~~~~~~g~las~d~~ 108 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM---VTTNLFSHPVFKDGGFTSNDRS 108 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE---eeccccCCccccCCCCCCCCHH
Confidence 355677888999999999996 4543332 1 23344443332211100 000000 0111111
Q ss_pred ------hhHHHHHHHHHhCCCCEEEEeecCC--hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC
Q 013498 163 ------RDIKTAWEAVKYAKRPRIHTFIATS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE 226 (442)
Q Consensus 163 ------~dI~~a~e~l~~~g~~~v~i~~~~S--d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e 226 (442)
+.++++++.....|.+.|.+..... +..-........+..++.+..++++|++.|.. |.+.+|
T Consensus 109 vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~G-V~laLE 179 (382)
T TIGR02631 109 VRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYG-LRFALE 179 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCC-cEEEEc
Confidence 1234456666667888887764321 10000000112344556667778888888643 555554
No 251
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=91.25 E-value=15 Score=36.43 Aligned_cols=153 Identities=13% Similarity=0.155 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhHcCCCEE-EEccCCC----------------ChhHHHHHHHHHHHhcccccccCCccceEeeeccc-c
Q 013498 100 SKEKLDIARQLAKLGVDII-EAGFPAA----------------SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC-N 161 (442)
Q Consensus 100 ~e~kl~ia~~L~~~GV~~I-EvG~p~~----------------~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~-~ 161 (442)
.+.-..+.+...+.|+..+ |+=.|.. .-..++.++++++. + .|++.--+.. +
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~---------g-kPV~lk~G~~~s 146 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKT---------K-KPILLKRGMSAT 146 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHhcC---------C-CcEEEeCCCCCC
Confidence 5555556666677787765 3321111 11223455555432 1 2444333333 7
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeec----CChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHH
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIA----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~----~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l 236 (442)
.+++..|.+.+...|-+.+.+.-. .+... + +.++ ...+...|+. ++. |.+.+ +-+-...+++
T Consensus 147 ~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~--------~-~~vd--l~~i~~lk~~~~~p-V~~D~-sHs~G~~~~v 213 (266)
T PRK13398 147 LEEWLYAAEYIMSEGNENVVLCERGIRTFETYT--------R-NTLD--LAAVAVIKELSHLP-IIVDP-SHATGRRELV 213 (266)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC--------H-HHHH--HHHHHHHHhccCCC-EEEeC-CCcccchhhH
Confidence 788888988888788877766543 22111 1 1122 2344455554 775 77744 2222344688
Q ss_pred HHHHHHHHHcCCcEE----------eccCcccccCHHHHHHHHHHHHHh
Q 013498 237 YEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I----------~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
..++..+..+||+.+ .++|-.=.+.|.++.++++.+++.
T Consensus 214 ~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 214 IPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred HHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHHHH
Confidence 999999999999832 247888899999999999999864
No 252
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=91.24 E-value=3.5 Score=40.94 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhC
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANT 276 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~ 276 (442)
...++++.+++ . .+.+. .+|-+.-.+..+.+.++..| ..|+.|.|++-+-.=+ .+..-++.+|+..
T Consensus 105 ~t~~~v~~a~~--~-~~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~hR~~L~d~ilikdnHi~~~g~~~~~v~~~r~~~ 178 (269)
T cd01568 105 ATRRYVEAARG--T-KARIA---DTRKTTPGLRLLEKYAVRAGGGDNHRLGLSDAVLIKDNHIAAAGGITEAVKRARAAA 178 (269)
T ss_pred HHHHHHHHhCC--C-CEEEe---ecCCCChhhHHHHHHHHHhCCCccccCCCcceeeecHhHHHHhCCHHHHHHHHHHhC
Confidence 34556666654 2 24442 24655555777777777765 3578888877553322 2446688889888
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccc--cccCCccCCCChhHHH
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGE--HILGGLYTGINTRHIV 354 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~--~~~~G~~tgidl~~L~ 354 (442)
|. +..|++-+|| ...+..|+++|||+|-. ||...|++-...+.... +...-..-||+++.+.
T Consensus 179 ~~--~~~I~vev~t-----~eea~~A~~~gaD~I~l---------d~~~~e~l~~~v~~i~~~~~i~i~asGGIt~~ni~ 242 (269)
T cd01568 179 PF--EKKIEVEVET-----LEEAEEALEAGADIIML---------DNMSPEELKEAVKLLKGLPRVLLEASGGITLENIR 242 (269)
T ss_pred CC--CCeEEEecCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhccCCCeEEEEECCCCHHHHH
Confidence 74 3568888887 67788999999999855 66666776655443311 1111234578999887
Q ss_pred HHHH
Q 013498 355 MASK 358 (442)
Q Consensus 355 ~ls~ 358 (442)
++++
T Consensus 243 ~~a~ 246 (269)
T cd01568 243 AYAE 246 (269)
T ss_pred HHHH
Confidence 7763
No 253
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=91.21 E-value=1.5 Score=43.36 Aligned_cols=102 Identities=22% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCccc---ccCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G---~~~P~~v~~li~~l~~~~p~~~~v~i~~H~H-NDlGLA~ANalaAl 303 (442)
..+.|.+-+.+.++.+.+.|++.|.++-|+| .++.++-.++++.+.+...+ +++|-+|.- ++..-++.-+..|.
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG--RVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEeccCCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999998 57888889999988888764 466777764 57888889999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHh
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~ 335 (442)
++|++.|-..--.... .+-++++..++.
T Consensus 93 ~~G~d~v~~~~P~~~~----~~~~~l~~~~~~ 120 (284)
T cd00950 93 KAGADAALVVTPYYNK----PSQEGLYAHFKA 120 (284)
T ss_pred HcCCCEEEEcccccCC----CCHHHHHHHHHH
Confidence 9999988766433321 233555554443
No 254
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.17 E-value=3 Score=40.85 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=90.2
Q ss_pred HHHHHHhHcCCCEEEEccCCCC---hhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh-CCCCEE
Q 013498 105 DIARQLAKLGVDIIEAGFPAAS---KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY-AKRPRI 180 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG~p~~~---~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~-~g~~~v 180 (442)
.+.+.+...|-+.+-+.--... ...-..+..+... + . .+.|+..| |+..++-|..| +..++ .+.++|
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~-~-----~-~~lpNTaG-~~ta~eAv~~a-~lare~~~~~~i 94 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKS-G-----Y-TLLPNTAG-CRTAEEAVRTA-RLAREALGTDWI 94 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhcccc-C-----C-EECCCCCC-CCCHHHHHHHH-HHHHHHhCCCeE
Confidence 3567788899998888643222 1111233332211 0 0 23455544 44445555433 11122 367888
Q ss_pred EEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCeEE-EccCCCCCCCHHHHHHHHHHHHHcCCcEEecc--
Q 013498 181 HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP-- 254 (442)
Q Consensus 181 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~---G~~~V~-f~~edasr~d~~~l~~~~~~~~~~Gad~I~la-- 254 (442)
.+-+-..+- ..+....+.++.++++ |+. |. ++..| + ..++++.++|++.| .+
T Consensus 95 KlEVi~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd-----~----~~ar~l~~~G~~~v-mPlg 152 (248)
T cd04728 95 KLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFT-VLPYCTDD-----P----VLAKRLEDAGCAAV-MPLG 152 (248)
T ss_pred EEEEecCcc-----------ccccCHHHHHHHHHHHHHCCCE-EEEEeCCC-----H----HHHHHHHHcCCCEe-CCCC
Confidence 885533331 1234445566666666 985 55 65543 2 46778888899988 33
Q ss_pred CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 255 DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
...|....-.-.++|+.+++.. ++ .+.++-+.|. -.-+..|++.||+.|
T Consensus 153 ~pIGsg~Gi~~~~~I~~I~e~~-~v-pVI~egGI~t-----peda~~AmelGAdgV 201 (248)
T cd04728 153 SPIGSGQGLLNPYNLRIIIERA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (248)
T ss_pred cCCCCCCCCCCHHHHHHHHHhC-CC-cEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 5555444333356666676653 22 1444433332 346678888999886
No 255
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=91.16 E-value=1.7 Score=43.57 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=68.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~ 304 (442)
.++.|.+-+.++++.+.+.|++.|.+.-|+|= ++.++-.++++.+.+...+ +++|-+|.=.+..-++.-+..|.+
T Consensus 20 dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--~~pvi~gv~~~t~~ai~~a~~a~~ 97 (296)
T TIGR03249 20 DGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG--KVPVYTGVGGNTSDAIEIARLAEK 97 (296)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC--CCcEEEecCccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 7888999999988887765 456666653357777778888999
Q ss_pred hCCCEEEe
Q 013498 305 AGARQVEV 312 (442)
Q Consensus 305 aGa~~vd~ 312 (442)
+||+.+=.
T Consensus 98 ~Gadav~~ 105 (296)
T TIGR03249 98 AGADGYLL 105 (296)
T ss_pred hCCCEEEE
Confidence 99999744
No 256
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.10 E-value=4.3 Score=43.98 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=80.8
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEcc-CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGF-PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~-p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
+...+.++-.+.++.|.++|+|.||+.. +..+..-.+.++.+.+..+.. ...+.|- -...++.+.+++
T Consensus 235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~-------~~V~aGn-V~t~e~a~~li~--- 303 (502)
T PRK07107 235 GAGINTRDYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDS-------VKVGAGN-VVDREGFRYLAE--- 303 (502)
T ss_pred eeccChhhHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCC-------ceEEecc-ccCHHHHHHHHH---
Confidence 4455666778999999999999999962 223333467888888764321 1222221 235667666665
Q ss_pred hCCCCEEEEeecCChHHHHH-HhCC--CHHHHHHHHHHHH-HHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc
Q 013498 174 YAKRPRIHTFIATSGIHMEH-KLRK--TKQQVVEIARSMV-KFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~-~l~~--s~~e~l~~~~~~v-~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad 249 (442)
+|++.|.+-+..--+...+ +++. ..-.++..+.+++ +++++.|.. +.+-..-+-|..- ++++++ .+|||
T Consensus 304 -aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~-~~viadgGir~~g----di~KAl-a~GA~ 376 (502)
T PRK07107 304 -AGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVY-IPICSDGGIVYDY----HMTLAL-AMGAD 376 (502)
T ss_pred -cCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCc-ceEEEcCCCCchh----HHHHHH-HcCCC
Confidence 4889887754444333332 3333 2333444444444 355666842 4333322335543 344444 48999
Q ss_pred EEeccC
Q 013498 250 TLNIPD 255 (442)
Q Consensus 250 ~I~laD 255 (442)
.+.+.-
T Consensus 377 ~vm~G~ 382 (502)
T PRK07107 377 FIMLGR 382 (502)
T ss_pred eeeeCh
Confidence 987743
No 257
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=91.04 E-value=5.3 Score=39.02 Aligned_cols=128 Identities=19% Similarity=0.077 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCccee
Q 013498 205 IARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++.++.+|++|+. |+.+-.. ..-.....+.++++.+.+.|-+.|-+.|..--+..++-.++|+.++++-- .+.
T Consensus 42 ~l~eki~la~~~~V~-v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~---~v~ 117 (237)
T TIGR03849 42 IVKEKIEMYKDYGIK-VYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGF---MVL 117 (237)
T ss_pred HHHHHHHHHHHcCCe-EeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCC---eEe
Confidence 356888999999984 7775310 00112256777888999999999999999999999999999999997511 122
Q ss_pred EEEeecCC-------cchHHHHHHHHHHhCCCEE--Eec---c-cccccccCcccHHHHHHHHHhc
Q 013498 284 ISTHCQND-------LGLSTANTIAGACAGARQV--EVT---I-NGIGERAGNASLEEVVMAFKCR 336 (442)
Q Consensus 284 i~~H~HND-------lGLA~ANalaAl~aGa~~v--d~T---v-~GlGeraGNa~lEevv~~L~~~ 336 (442)
-+++-.+. ...-+-.+-..++|||++| ++- - -|+=+..||.-...+...+...
T Consensus 118 ~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~l 183 (237)
T TIGR03849 118 SEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAENV 183 (237)
T ss_pred ccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhhC
Confidence 23322222 2233345567799999995 552 1 3666788999887776666643
No 258
>PLN02858 fructose-bisphosphate aldolase
Probab=91.00 E-value=20 Score=43.58 Aligned_cols=194 Identities=17% Similarity=0.173 Sum_probs=125.7
Q ss_pred CcCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCC---hhH-HHHHHHHHHHhcccccccCCccceEeeeccc-
Q 013498 88 RDGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAAS---KED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRC- 160 (442)
Q Consensus 88 RDG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~---~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~- 160 (442)
+++.+..+ ..++.|....+++.-.+.+.+.|=--+|... +.+ ...++.+++. ..+|+..-+=-+
T Consensus 1110 ~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~---------~~vpV~lHLDHg~ 1180 (1378)
T PLN02858 1110 EKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQ---------ASVPITVHFDHGT 1180 (1378)
T ss_pred HHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHH---------CCCCEEEECCCCC
Confidence 34555554 3478999999999999999998765555332 212 1233334332 124543322222
Q ss_pred chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE------ccCCC------
Q 013498 161 NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF------SPEDA------ 228 (442)
Q Consensus 161 ~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f------~~eda------ 228 (442)
+.+++.+|+++ |.+.|.+ -.| ..+.+|+++..++.+++|+..|.. |+- +.||.
T Consensus 1181 ~~~~i~~ai~~----Gf~SVM~--DgS--------~l~~eeNi~~t~~vv~~Ah~~gv~-VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1181 SKHELLEALEL----GFDSVMV--DGS--------HLSFTENISYTKSISSLAHSKGLM-VEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CHHHHHHHHHh----CCCEEEE--eCC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEecccCCccCCcccccc
Confidence 45677777775 8887654 233 346789999999999999999984 532 22332
Q ss_pred --CCCCHHHHHHHHHHHHHcCCcEEecc--Cccccc---CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 229 --GRSDRKFLYEILGEVIKVGATTLNIP--DTVGIT---MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 229 --sr~d~~~l~~~~~~~~~~Gad~I~la--DT~G~~---~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
..+||+...++++ +-|+|.+-++ -.=|.. .|.-=.++++.|++.++.. ++||.+|.=. |..-.+-..
T Consensus 1246 ~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~-~vpLVlHGgS--G~~~~~~~~ 1319 (1378)
T PLN02858 1246 EAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKK-GVLLVLHGAS--GLPESLIKE 1319 (1378)
T ss_pred ccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCC-CCcEEEeCCC--CCCHHHHHH
Confidence 2678887766665 4588865544 344554 2555577889999987421 3788877654 555778889
Q ss_pred HHHhCCCEEE
Q 013498 302 GACAGARQVE 311 (442)
Q Consensus 302 Al~aGa~~vd 311 (442)
|+..|+.-|+
T Consensus 1320 ai~~Gi~KiN 1329 (1378)
T PLN02858 1320 CIENGVRKFN 1329 (1378)
T ss_pred HHHcCCeEEE
Confidence 9999999884
No 259
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.88 E-value=1.7 Score=43.47 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIK-VGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 302 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~-~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaA 302 (442)
..+.|.+-+.++++.+.+ .|++.|.++-|+|= ++.++-.++++...+..++ +++|-++. +++.--++..+..|
T Consensus 18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~--~~~viagvg~~~t~~ai~~a~~a 95 (293)
T PRK04147 18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKG--KVKLIAQVGSVNTAEAQELAKYA 95 (293)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCC--CCCEEecCCCCCHHHHHHHHHHH
Confidence 467899999999999999 99999999999986 8889999999988888765 47788887 78888999999999
Q ss_pred HHhCCCEEEecc
Q 013498 303 ACAGARQVEVTI 314 (442)
Q Consensus 303 l~aGa~~vd~Tv 314 (442)
-++||+.+=+.-
T Consensus 96 ~~~Gad~v~v~~ 107 (293)
T PRK04147 96 TELGYDAISAVT 107 (293)
T ss_pred HHcCCCEEEEeC
Confidence 999999987654
No 260
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=90.82 E-value=1.8 Score=43.40 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaAl 303 (442)
.++.|.+-+.++++.+.+.|++.|.+.-|+|- ++-++-.++++.+.+...+ +++|-+|. +++.--++..+..|.
T Consensus 15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g--~~pvi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 15 NGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAG--RIPFAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCcEEEECCcchHHHHHHHHHHHH
Confidence 46899999999999999999999999999985 7778888888888777765 47777776 688888999999999
Q ss_pred HhCCCEEEecc
Q 013498 304 CAGARQVEVTI 314 (442)
Q Consensus 304 ~aGa~~vd~Tv 314 (442)
++||+.+=..-
T Consensus 93 ~~Gad~v~v~p 103 (294)
T TIGR02313 93 EAGADAAMVIV 103 (294)
T ss_pred HcCCCEEEEcC
Confidence 99999976543
No 261
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=90.77 E-value=1.8 Score=44.26 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCc-ccccCHHHHHHHHHHHHHhCCCCcceeEEEee---------cCCcchHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLSTAN 298 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT-~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~---------HNDlGLA~AN 298 (442)
.+.+++.+.+.++.+.+.|+.+|.|.+- .-....+.+.++++.+++..|+ +.+|+ |.+.|+-...
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~-----i~~~~~t~~ei~~~~~~~g~~~~e 142 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG-----MHIHAFSPMEVYYGARNSGLSVEE 142 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEecCHHHHHHHHHHcCCCHHH
Confidence 3568899999999999999999999832 2234566778999999988765 44554 6678877776
Q ss_pred HHHHH-HhCCCEEE
Q 013498 299 TIAGA-CAGARQVE 311 (442)
Q Consensus 299 alaAl-~aGa~~vd 311 (442)
.+..+ +||++.+.
T Consensus 143 ~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 143 ALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHHHhCccccc
Confidence 66555 56999886
No 262
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=90.70 E-value=6.6 Score=39.80 Aligned_cols=155 Identities=17% Similarity=0.130 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHHHhHcC-CCEEEEc-cCCCChhHHHHHHHHHHHhcc-ccc-ccCCccceEe--eecc-cchhhHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLG-VDIIEAG-FPAASKEDFEAVRTIAKEVGN-AVD-AESGYVPVIC--GLSR-CNERDIKTA 168 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~G-V~~IEvG-~p~~~~~d~e~v~~l~~~~~~-~~~-~~~~l~~~i~--~~~r-~~~~dI~~a 168 (442)
..++.+...+|++.|.+.+ +..|-+. -|..- +.+.++.+.+...+ .+. ..-.....+. .+.+ ...+++..+
T Consensus 83 ~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i--~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~a 160 (313)
T TIGR01210 83 REVPKETRNYIFEKIAQRDNLKEVVVESRPEFI--DEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRA 160 (313)
T ss_pred CcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcC--CHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHH
Confidence 3456777788888887776 5433232 23221 23455555543211 110 0000001110 1111 134567778
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC---C---------CCCCHH--
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED---A---------GRSDRK-- 234 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed---a---------sr~d~~-- 234 (442)
++.++.+|+.....++---+ +.+.++.++.+.+.++.+.+++ ..|.+.+-. . +...+.
T Consensus 161 i~~~~~~Gi~v~~~~i~G~P-------~~se~ea~ed~~~ti~~~~~l~-~~vs~~~l~v~~gT~l~~~~~~G~~~pp~l 232 (313)
T TIGR01210 161 AELARKYGAGVKAYLLFKPP-------FLSEKEAIADMISSIRKCIPVT-DTVSINPTNVQKGTLVEFLWNRGLYRPPWL 232 (313)
T ss_pred HHHHHHcCCcEEEEEEecCC-------CCChhhhHHHHHHHHHHHHhcC-CcEEEECCEEeCCCHHHHHHHcCCCCCCCH
Confidence 88888888874333331111 3456677888888899998887 566664421 1 122222
Q ss_pred -HHHHHHHHHHHcCCcEEeccCcccccCH
Q 013498 235 -FLYEILGEVIKVGATTLNIPDTVGITMP 262 (442)
Q Consensus 235 -~l~~~~~~~~~~Gad~I~laDT~G~~~P 262 (442)
-+.++++.+.+.++ ..++||+|....
T Consensus 233 ws~~e~l~e~~~~~~--~~~~d~~g~~~~ 259 (313)
T TIGR01210 233 WSVAEVLKEAKKIGA--EVLSDPVGAGSD 259 (313)
T ss_pred HHHHHHHHHHHhhCC--eEEecCCCCCCc
Confidence 34455555554454 566799988743
No 263
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=90.69 E-value=2 Score=42.73 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaAl 303 (442)
.++.|.+-+.++++.+.+.|++.|.++-|+|- ++.++-.++++.+.+...+ +++|-+|. +++.--++..+..|.
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~--~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNG--RVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEeCCCccHHHHHHHHHHHH
Confidence 46789999999999999999999999888874 7788888888888877654 46666666 567778888999999
Q ss_pred HhCCCEEEecc
Q 013498 304 CAGARQVEVTI 314 (442)
Q Consensus 304 ~aGa~~vd~Tv 314 (442)
++||+.|-..-
T Consensus 91 ~~Gad~v~v~p 101 (285)
T TIGR00674 91 DVGADGFLVVT 101 (285)
T ss_pred HcCCCEEEEcC
Confidence 99999887653
No 264
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=90.66 E-value=17 Score=35.11 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE----cc--CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEA----GF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEv----G~--p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
.+...-.+-++.|.+.|++.+-+ |. |..+ .-.+.++.|++..++. + +-.... .++.+..++.
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~-~G~~~v~~lr~~~~~~--------~-lDvHLm--~~~p~~~i~~ 83 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLS-FGPPVVKSLRKHLPNT--------F-LDCHLM--VSNPEKWVDD 83 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcC-cCHHHHHHHHhcCCCC--------C-EEEEEC--CCCHHHHHHH
Confidence 34444556678888889998766 43 3221 1246777777642121 1 111111 2334444555
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
+..+|++.+.+.....+ ..+.+.++.+|+.|+. +.+... ..++.+.+.++++. ..+|.|
T Consensus 84 ~~~~Gad~itvH~ea~~---------------~~~~~~l~~ik~~G~~-~gval~--p~t~~e~l~~~l~~---~~vD~V 142 (228)
T PTZ00170 84 FAKAGASQFTFHIEATE---------------DDPKAVARKIREAGMK-VGVAIK--PKTPVEVLFPLIDT---DLVDMV 142 (228)
T ss_pred HHHcCCCEEEEeccCCc---------------hHHHHHHHHHHHCCCe-EEEEEC--CCCCHHHHHHHHcc---chhhhH
Confidence 56679998876544331 2245678888999974 555442 33466666655410 012221
Q ss_pred ec----cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 252 NI----PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 252 ~l----aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.+ +...|...-.+..+.++.+++..+. +.|.+ |-|.-..|.-.+.++||+.+
T Consensus 143 l~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~---~~I~V----dGGI~~~ti~~~~~aGad~i 198 (228)
T PTZ00170 143 LVMTVEPGFGGQSFMHDMMPKVRELRKRYPH---LNIQV----DGGINLETIDIAADAGANVI 198 (228)
T ss_pred HhhhcccCCCCcEecHHHHHHHHHHHHhccc---CeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence 11 1222444444555667778877653 33333 56777788889999999987
No 265
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=90.65 E-value=10 Score=33.65 Aligned_cols=136 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhHcCCCEEEEc--cCCCChhHHHHHHHHHHHhcccccccCCccceEeeeccc---chhhHHHHHHHHHhC
Q 013498 101 KEKLDIARQLAKLGVDIIEAG--FPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRC---NERDIKTAWEAVKYA 175 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG--~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~---~~~dI~~a~e~l~~~ 175 (442)
++..++.......|+..+.++ .|...+.-.+.++.+.+..+. + .+...+.. +++.++.. ..+
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~~-------~--~~~i~T~~~~~~~~~~~~l----~~~ 97 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPG-------F--EISIETNGTLLTEELLKEL----KEL 97 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCCC-------c--eEEEEcCcccCCHHHHHHH----HhC
Confidence 677788888888899888774 455555334566666654211 1 12112221 34444433 445
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-CCCCCCHHHHHHHHHHHHHcC-CcEE
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVG-ATTL 251 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-dasr~d~~~l~~~~~~~~~~G-ad~I 251 (442)
|...+.+.+-..+.....+++ .....+++..+.++.+++.|+. +.+... .....+.+.+.+.++.+.+.+ ++.+
T Consensus 98 g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~ 173 (204)
T cd01335 98 GLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLG-LSTTLLVGLGDEDEEDDLEELELLAEFRSPDRV 173 (204)
T ss_pred CCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCC-ceEEEEEecCCChhHHHHHHHHHHHhhcCcchh
Confidence 888888877766655555543 1122345666777778887774 333221 122233466777777777766 5433
No 266
>PLN02417 dihydrodipicolinate synthase
Probab=90.63 E-value=2 Score=42.67 Aligned_cols=102 Identities=21% Similarity=0.156 Sum_probs=81.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaAl 303 (442)
.+..|.+-+.++++.+.+.|++.|.++-|.|= ++.++-.++++.+.+..++ .++|-+|. +++.--++..+..|-
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~--~~pvi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGG--KIKVIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCC--CCcEEEECCCccHHHHHHHHHHHH
Confidence 46789999999999999999999999999985 7888889999888887765 47777776 788888999999999
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHHh
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~ 335 (442)
++||+.|-..---.. ..+-|+++..++.
T Consensus 94 ~~Gadav~~~~P~y~----~~~~~~i~~~f~~ 121 (280)
T PLN02417 94 AVGMHAALHINPYYG----KTSQEGLIKHFET 121 (280)
T ss_pred HcCCCEEEEcCCccC----CCCHHHHHHHHHH
Confidence 999999876543222 2345666665543
No 267
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.56 E-value=7.7 Score=37.22 Aligned_cols=138 Identities=24% Similarity=0.329 Sum_probs=89.2
Q ss_pred HHHHHHHHhHcCCCEEEEccCC----CChh-HHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 103 KLDIARQLAKLGVDIIEAGFPA----ASKE-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 103 kl~ia~~L~~~GV~~IEvG~p~----~~~~-d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
-..-|..|.++|+|.|-.|--. .++. |.|....+-+..+ +|++.. .- ..+++++..|+
T Consensus 56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~d~ei~~~ie~~~~---------v~vvTt-----s~---Avv~aL~al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTSGSLIGGPGYDKEIAQRIEEAKG---------VPVVTT-----ST---AVVEALNALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEeccceeeecCCchhHHHHHHHHhccC---------Cceeec-----hH---HHHHHHHhhCc
Confidence 3455778899999999886421 2222 4454444444321 233321 11 12344444588
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE---ccC---CCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPE---DAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f---~~e---dasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
.+|.+..|-.+ +--+..++|....|++-|.| ++. ..+|.+|..++++++.+..-++|.|
T Consensus 119 ~ri~vlTPY~~---------------evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 119 QRISVLTPYID---------------EVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred ceEEEeccchh---------------hhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 89988777543 22346778889999975555 333 3689999999999999998899998
Q ss_pred eccCcccccCHHHHHHHHHHHHHhCC
Q 013498 252 NIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 252 ~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
-+. ++-.+..+.|..+-+.++
T Consensus 184 FiS-----CTnlRt~eii~~lE~~~G 204 (238)
T COG3473 184 FIS-----CTNLRTFEIIEKLERDTG 204 (238)
T ss_pred EEE-----eeccccHHHHHHHHHHhC
Confidence 886 444556667777777663
No 268
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.47 E-value=21 Score=35.87 Aligned_cols=193 Identities=20% Similarity=0.175 Sum_probs=118.3
Q ss_pred cCCCCCC-C-CCCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----h-HHHHHHHHHHHhcccccccCCccceEeeeccc
Q 013498 89 DGEQSPG-A-TLTSKEKLDIARQLAKLGVDIIEAGFPAASK-----E-DFEAVRTIAKEVGNAVDAESGYVPVICGLSRC 160 (442)
Q Consensus 89 DG~Q~~g-~-~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----~-d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~ 160 (442)
++.+..+ + ..+.|.-..|++.-.+.+-+.|=-.+++... + -...++.+++.. . +|++.-+=-+
T Consensus 15 e~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~--------~-vPV~lHlDHg 85 (286)
T COG0191 15 ENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKY--------G-VPVALHLDHG 85 (286)
T ss_pred HcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHC--------C-CCEEEECCCC
Confidence 4444443 2 3578999999999999999988665553221 1 134555555542 1 4544333222
Q ss_pred -chhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--c----cCC--CCCC
Q 013498 161 -NERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--S----PED--AGRS 231 (442)
Q Consensus 161 -~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~----~ed--asr~ 231 (442)
..+++..++++ |...+.+ -.| ..+.+|+++..++.+++|+..|.. |+. + -|| ....
T Consensus 86 ~~~~~~~~ai~~----GFsSvMi--DgS--------~~~~eENi~~tkevv~~ah~~gvs-VEaElG~~GG~Edg~~~~~ 150 (286)
T COG0191 86 ASFEDCKQAIRA----GFSSVMI--DGS--------HLPFEENIAITKEVVEFAHAYGVS-VEAELGTLGGEEDGVVLYT 150 (286)
T ss_pred CCHHHHHHHHhc----CCceEEe--cCC--------cCCHHHHHHHHHHHHHHHHHcCCc-EEEEeccccCccCCccccc
Confidence 45666666664 7776644 222 245789999999999999999984 543 2 255 2223
Q ss_pred CHHH---HHHHHHHHHHcCCcE--EeccCcccccCH---HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH
Q 013498 232 DRKF---LYEILGEVIKVGATT--LNIPDTVGITMP---TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA 303 (442)
Q Consensus 232 d~~~---l~~~~~~~~~~Gad~--I~laDT~G~~~P---~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl 303 (442)
+++. ..+..+.+..-|+|. +.|.-.=|...| .--.++++.+++.++ +||.+|.=- |.....-..|+
T Consensus 151 ~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~----~PlVlHGgS--Gip~~eI~~aI 224 (286)
T COG0191 151 DPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS----LPLVLHGGS--GIPDEEIREAI 224 (286)
T ss_pred chhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC----CCEEEeCCC--CCCHHHHHHHH
Confidence 3222 223334444556775 445555566554 223567778888774 678877654 77777777888
Q ss_pred HhCCCEEE
Q 013498 304 CAGARQVE 311 (442)
Q Consensus 304 ~aGa~~vd 311 (442)
+.|+.-|+
T Consensus 225 ~~GV~KvN 232 (286)
T COG0191 225 KLGVAKVN 232 (286)
T ss_pred HhCceEEe
Confidence 88877764
No 269
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.40 E-value=6.1 Score=39.01 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=81.8
Q ss_pred HHHHHHHhHcCCCEEEEcc---------CCCC----hhHHHHHHHHHHHhcccccccCCccc-eEeee--ccc-c-hh-h
Q 013498 104 LDIARQLAKLGVDIIEAGF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVP-VICGL--SRC-N-ER-D 164 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~---------p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~-~i~~~--~r~-~-~~-d 164 (442)
-.-++.++++|++.|=+|. |... ++....++.+++-.+. | .+..+ .-. + .+ -
T Consensus 22 ~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~---------p~viaD~~fg~y~~~~~~a 92 (254)
T cd06557 22 YPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPR---------ALVVADMPFGSYQTSPEQA 92 (254)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCC---------CeEEEeCCCCcccCCHHHH
Confidence 3457888999999998873 2211 1223444555443221 2 22222 211 1 22 3
Q ss_pred HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----Ecc---------CCCCCC
Q 013498 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSP---------EDAGRS 231 (442)
Q Consensus 165 I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~---------edasr~ 231 (442)
++.+.+.++++|+..|++-.. +.+.+.|+.+++.|+. |+ +++ --.+|+
T Consensus 93 v~~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agip-V~gHiGL~pq~~~~~gg~~~~grt 153 (254)
T cd06557 93 LRNAARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIP-VMGHIGLTPQSVNQLGGYKVQGKT 153 (254)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCC-eeccccccceeeeccCCceeccCC
Confidence 666777777789998887543 2345667777888875 43 221 112455
Q ss_pred C--HHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 232 D--RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 232 d--~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
+ .+.+.+-++++.++||+.|.+.= .|. ++++.+.+.++
T Consensus 154 ~~~a~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~ 193 (254)
T cd06557 154 EEEAERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence 5 46777788888999999999852 243 35666666654
No 270
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=90.33 E-value=8.8 Score=39.82 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcccccccCCccceEeeecc-cchhhHHHHHHHHHhCCCCEEEEee-cCChHHHHHHhCCCHHHHHHHHH
Q 013498 130 FEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRKTKQQVVEIAR 207 (442)
Q Consensus 130 ~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~e~l~~~g~~~v~i~~-~~Sd~h~~~~l~~s~~e~l~~~~ 207 (442)
++.++.+++. + .|++..-+. +..+|+..|++.+...|.+.|.+.- ++|..-. .+ +.. + ++
T Consensus 215 ~~LL~~~a~~---------g-kPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~---~~--~~~-l-dl- 276 (360)
T PRK12595 215 FELLKAAGRV---------N-KPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEK---AT--RNT-L-DI- 276 (360)
T ss_pred HHHHHHHHcc---------C-CcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCC---CC--CCC-c-CH-
Confidence 5566666553 1 245554444 5789999999998888887776653 4442100 00 000 1 11
Q ss_pred HHHHHHHH-cCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE----------eccCcccccCHHHHHHHHHHHHHhC
Q 013498 208 SMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 208 ~~v~~ar~-~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I----------~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
.++...|+ .|+. |.|.+ |-+--+.+++..++..+..+|||.+ ..+|-.=.++|.++.++++.+++..
T Consensus 277 ~~i~~lk~~~~~P-V~~d~-~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i~~~~ 354 (360)
T PRK12595 277 SAVPILKQETHLP-VMVDV-THSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDELKPLA 354 (360)
T ss_pred HHHHHHHHHhCCC-EEEeC-CCCCcchhhHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHHHHHH
Confidence 23333444 5776 77754 3222345678788899999999733 3578888899999999999998753
No 271
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.29 E-value=19 Score=35.06 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhHcCCCEEEEccC----CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p----~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.+-.++++.+.+.|++.|=+--- ...+.+++.++.+++... .|.+.+=+-.+.+|++..++. |
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~---------ipv~~~GGi~s~~~~~~~l~~----G 96 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQVF---------IPLTVGGGIRSVEDARRLLRA----G 96 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCC---------CCEEeeCCCCCHHHHHHHHHc----C
Confidence 35678899999999988766321 123456889998887642 244443333367788777663 7
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--CC----C---------CCCCHHHHHHHHH
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--ED----A---------GRSDRKFLYEILG 241 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--ed----a---------sr~d~~~l~~~~~ 241 (442)
.+.|.+- ..- + .++ +.+ .+.. +..|-+.+.++. -+ . .......+.++++
T Consensus 97 a~~Viig--t~~------l-~~p-~~~---~ei~---~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 97 ADKVSIN--SAA------V-ANP-ELI---SEAA---DRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred CCEEEEC--hhH------h-hCc-HHH---HHHH---HHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 7776442 211 0 011 222 2222 223322233322 10 0 0011124457778
Q ss_pred HHHHcCCcEEeccC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHH-HHHHHHHh-CCCEEEeccccc
Q 013498 242 EVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTA-NTIAGACA-GARQVEVTINGI 317 (442)
Q Consensus 242 ~~~~~Gad~I~laD--T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~A-NalaAl~a-Ga~~vd~Tv~Gl 317 (442)
.+.+.|++.+.+-| ..|...=.. .++++.+++..+ +|+-.-.- .... -..++++. ||+.+ +.|-
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~----ipvia~GG----v~s~~d~~~~~~~~G~~gv---ivg~ 228 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGYD-LELTRAVSDAVN----VPVIASGG----AGNLEHFVEAFTEGGADAA---LAAS 228 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCC----CCEEEECC----CCCHHHHHHHHHhCCccEE---eEhH
Confidence 88899999988833 444433222 467777777653 34444331 1112 22244543 76543 2221
Q ss_pred ccccCcccHHHHHHHHHhc
Q 013498 318 GERAGNASLEEVVMAFKCR 336 (442)
Q Consensus 318 GeraGNa~lEevv~~L~~~ 336 (442)
-=-.|..+++++...|+..
T Consensus 229 al~~~~~~~~~~~~~~~~~ 247 (253)
T PRK02083 229 IFHFGEITIGELKAYLAEQ 247 (253)
T ss_pred HHHcCCCCHHHHHHHHHHC
Confidence 1123567777777777653
No 272
>PLN02417 dihydrodipicolinate synthase
Probab=90.28 E-value=16 Score=36.22 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=111.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
+..+.-.++++.|.+.|++-|=+ | ++..+.+|+. .++...+... +.+|.+.+.+..+.++.-.-.+.
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~-------~~~pvi~gv~~~~t~~~i~~a~~ 91 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-------GKIKVIGNTGSNSTREAIHATEQ 91 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC-------CCCcEEEECCCccHHHHHHHHHH
Confidence 78888899999999999998877 3 3555666654 4455555432 23567777776555554333334
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--CCCCCHHHHHHHHHHHHHcCCc
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--AGRSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--asr~d~~~l~~~~~~~~~~Gad 249 (442)
.+.+|++.+.+..|.. ++.+.++.++-..+.++. . +-+-++... ....+++.+.+++ +. ..
T Consensus 92 a~~~Gadav~~~~P~y-------~~~~~~~i~~~f~~va~~----~-pi~lYn~P~~tg~~l~~~~l~~l~----~~-pn 154 (280)
T PLN02417 92 GFAVGMHAALHINPYY-------GKTSQEGLIKHFETVLDM----G-PTIIYNVPGRTGQDIPPEVIFKIA----QH-PN 154 (280)
T ss_pred HHHcCCCEEEEcCCcc-------CCCCHHHHHHHHHHHHhh----C-CEEEEEChhHhCcCCCHHHHHHHh----cC-CC
Confidence 4668999887755532 345667777666665552 2 434555543 2345667665544 43 58
Q ss_pred EEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH-HHhCCCEEEecccccccccCcccHHH
Q 013498 250 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACAGARQVEVTINGIGERAGNASLEE 328 (442)
Q Consensus 250 ~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA-l~aGa~~vd~Tv~GlGeraGNa~lEe 328 (442)
.+.+.|+.|- ..+.++ +. ++ + --+.++++ ..+.+ +.+|++.+ +.|+ +|.-.+.
T Consensus 155 i~giKdss~~---~~~~~~----~~--~~---~-~v~~G~d~------~~~~~~l~~Ga~G~---is~~----~n~~P~~ 208 (280)
T PLN02417 155 FAGVKECTGN---DRVKQY----TE--KG---I-LLWSGNDD------ECHDARWDYGADGV---ISVT----SNLVPGL 208 (280)
T ss_pred EEEEEeCCCc---HHHHHH----hc--CC---e-EEEEcccH------HhhHHHHhCCCCEE---EecH----HHhhHHH
Confidence 9999999886 444442 11 11 1 22334432 33455 67788654 4433 4776777
Q ss_pred HHHHHH
Q 013498 329 VVMAFK 334 (442)
Q Consensus 329 vv~~L~ 334 (442)
++...+
T Consensus 209 ~~~l~~ 214 (280)
T PLN02417 209 MHKLMF 214 (280)
T ss_pred HHHHHH
Confidence 665554
No 273
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.23 E-value=2.4 Score=41.77 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGA 303 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~H-NDlGLA~ANalaAl 303 (442)
.+..|.+-+.+.++.+.+.|++.|.+.-|+|- ++.++-.++++.+.+...+ +++|-+|.- ++.--++.-+..|-
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~--~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAG--RVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCC--CCeEEEecCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999999984 7788889999988887764 466777764 45555777888889
Q ss_pred HhCCCEEEeccc
Q 013498 304 CAGARQVEVTIN 315 (442)
Q Consensus 304 ~aGa~~vd~Tv~ 315 (442)
++||+.|-..--
T Consensus 90 ~~Gad~v~v~pP 101 (281)
T cd00408 90 EAGADGVLVVPP 101 (281)
T ss_pred HcCCCEEEECCC
Confidence 999999876543
No 274
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=90.22 E-value=2.3 Score=42.43 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEee-cCCcchHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKV-GATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHC-QNDLGLSTANTIAG 302 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~-Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~-HNDlGLA~ANalaA 302 (442)
.+..|.+-+.++++.+.+. |++.|.++-|+|= ++.++-.++++...+...+ +++|-++. +++.--++..+..|
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~--~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKG--KVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCC--CCeEEeccCCCCHHHHHHHHHHH
Confidence 4578999999999999999 9999999999984 7788888888888887765 47788887 78888889999999
Q ss_pred HHhCCCEEEec
Q 013498 303 ACAGARQVEVT 313 (442)
Q Consensus 303 l~aGa~~vd~T 313 (442)
.++||+.+=..
T Consensus 93 ~~~Gad~v~~~ 103 (288)
T cd00954 93 EELGYDAISAI 103 (288)
T ss_pred HHcCCCEEEEe
Confidence 99999998643
No 275
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.10 E-value=5.3 Score=39.64 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=81.3
Q ss_pred HHHHHHHhHcCCCEEEEcc---------CCCC----hhHHHHHHHHHHHhcccccccCCccceEeee--cc--cchhh-H
Q 013498 104 LDIARQLAKLGVDIIEAGF---------PAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVICGL--SR--CNERD-I 165 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~---------p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~--~r--~~~~d-I 165 (442)
-.-++.++++|+|.|=+|. |... ++....++.+++-.+. .+.+..+ .- .+.++ +
T Consensus 25 ~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~--------p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 25 YPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPR--------ALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCC--------CcEEEeCCCCCccCCHHHHH
Confidence 3457888999999998873 3211 1223445555543221 1122222 21 13333 6
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----EccC---------CCCCCC
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE---------DAGRSD 232 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~e---------dasr~d 232 (442)
+.+.+.++++|+..|++-.. +...+.|+.+++.|++ |+ +++. -.+|++
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIp-V~gHiGL~pq~~~~~gg~~i~grt~ 157 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIP-VMGHLGLTPQSVNVLGGYKVQGRDE 157 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCC-EeeeecccceeecccCCeeeecCCH
Confidence 77777777789998887543 1344567777788976 43 2221 124554
Q ss_pred --HHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 233 --RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 233 --~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
.+.+.+-++++.++||+.|.+.= .|. ++++.+.+.++
T Consensus 158 ~~a~~~i~ra~a~~eAGA~~i~lE~-----v~~---~~~~~i~~~l~ 196 (264)
T PRK00311 158 EAAEKLLEDAKALEEAGAFALVLEC-----VPA---ELAKEITEALS 196 (264)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence 45777778888999999999852 244 35555655553
No 276
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=90.04 E-value=14 Score=37.73 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEeec
Q 013498 106 IARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIA 185 (442)
Q Consensus 106 ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~ 185 (442)
-++.|..+|++.+-++++-. .+...++.+++.- .|.|...+.++.++|+.|++.++..|.+-+.++-+
T Consensus 115 svd~l~~~~~~ayKIaS~E~--~~~plik~iA~~~----------kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC 182 (347)
T COG2089 115 AVDLLESLNPPAYKIASGEI--NDLPLIKYIAKKG----------KPIILSTGMATIEEIEEAVAILRENGNPDIALLHC 182 (347)
T ss_pred HHHHHHhcCCCeEEecCccc--cChHHHHHHHhcC----------CCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 35555556666666654422 2467888888741 26788888889999999999999999886666544
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE----Eec------cC
Q 013498 186 TSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT----LNI------PD 255 (442)
Q Consensus 186 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~----I~l------aD 255 (442)
+|. +-...++ -++..+.+++...++ .++.-| ++..++..++. +..||.. +.+ +|
T Consensus 183 ~s~------YPap~ed--~NL~~i~~l~~~Fn~---~vGlSD---HT~g~~a~l~A--vALGA~viEKHFtldk~~~GpD 246 (347)
T COG2089 183 TSA------YPAPFED--VNLKAIPKLAEAFNA---IVGLSD---HTLGILAPLAA--VALGASVIEKHFTLDKSREGPD 246 (347)
T ss_pred cCC------CCCCHHH--hhHHHHHHHHHHhCC---cccccc---CccchhHHHHH--HHhcccceeeeeeecCCCCCCC
Confidence 442 2222232 233444444444454 344423 44456655554 3457653 344 57
Q ss_pred cccccCHHHHHHHHHHHHHh
Q 013498 256 TVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~ 275 (442)
..=.|.|.++++++..+++.
T Consensus 247 ~~fSldP~efk~mv~~ir~~ 266 (347)
T COG2089 247 HAFSLDPDEFKEMVDAIRQV 266 (347)
T ss_pred cceecCHHHHHHHHHHHHHH
Confidence 77789999999999999863
No 277
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=90.04 E-value=22 Score=35.60 Aligned_cols=163 Identities=18% Similarity=0.240 Sum_probs=88.5
Q ss_pred ceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEcc----CCCC----hhHHHHHHHHHHHhcccccccCCc
Q 013498 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGF----PAAS----KEDFEAVRTIAKEVGNAVDAESGY 150 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~----p~~~----~~d~e~v~~l~~~~~~~~~~~~~l 150 (442)
-.-|+-+|. |-..--|..++.++.++-++.+.+.|.++|++|. |... +++++.+.-+.+.+.... .
T Consensus 17 imGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~- 90 (282)
T PRK11613 17 VMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----E- 90 (282)
T ss_pred EEEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----C-
Confidence 345666665 4444335557999999999999999999999995 3322 134443332222221110 0
Q ss_pred cceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC---
Q 013498 151 VPVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--- 227 (442)
Q Consensus 151 ~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--- 227 (442)
+| |+ .=-.+.+-++.|+++ |++.|+-..+.++ ++ +++.+++.|+. +.+....
T Consensus 91 ~~-IS-IDT~~~~va~~AL~~----GadiINDI~g~~d-----------~~-------~~~~~a~~~~~-vVlmh~~g~p 145 (282)
T PRK11613 91 VW-IS-VDTSKPEVIRESAKA----GAHIINDIRSLSE-----------PG-------ALEAAAETGLP-VCLMHMQGNP 145 (282)
T ss_pred Ce-EE-EECCCHHHHHHHHHc----CCCEEEECCCCCC-----------HH-------HHHHHHHcCCC-EEEEcCCCCC
Confidence 11 22 122355566666664 8887753322221 11 22334667775 4443321
Q ss_pred --C-CCC---C-----HHHHHHHHHHHHHcCCc--EEeccCc-cccc-CHHHHHHHHHHHH
Q 013498 228 --A-GRS---D-----RKFLYEILGEVIKVGAT--TLNIPDT-VGIT-MPTEFGKLIADIK 273 (442)
Q Consensus 228 --a-sr~---d-----~~~l~~~~~~~~~~Gad--~I~laDT-~G~~-~P~~v~~li~~l~ 273 (442)
. .+. | .+++.+.++.+.++|++ +|.+ |- .|.. ++++-.++++.+.
T Consensus 146 ~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~ 205 (282)
T PRK11613 146 KTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLA 205 (282)
T ss_pred CccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHH
Confidence 1 111 1 25777888889999986 4444 44 2432 3455566666654
No 278
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=90.01 E-value=7.2 Score=40.29 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcC
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~G 247 (442)
++.++.+|+.+|.+-+-.-+-.....+++. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.|
T Consensus 111 l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 111 FAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcC
Confidence 455666799999986655555666677653 2234566788889999986455544322 3456678889999999999
Q ss_pred CcEEec
Q 013498 248 ATTLNI 253 (442)
Q Consensus 248 ad~I~l 253 (442)
++.|.+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 998764
No 279
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=90.00 E-value=16 Score=37.99 Aligned_cols=111 Identities=14% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEE-ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHH
Q 013498 196 RKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 196 ~~s~~e~l~~~~~~v~~ar~~G~~~V~f-~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~ 274 (442)
-++.+|+++. ++.+++.|+..+.+ +.+...+.+.+++.++++.+.+.-. .+.+ .+|.++.+++ +.|++
T Consensus 103 ~ls~eEI~~~----a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p-~i~i--~~g~lt~e~l----~~Lk~ 171 (371)
T PRK09240 103 TLDEEEIERE----MAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFS-SVSI--EVQPLSEEEY----AELVE 171 (371)
T ss_pred cCCHHHHHHH----HHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC-Ccee--ccCCCCHHHH----HHHHH
Confidence 3576666654 55566789876655 3455667889999999998876432 2333 3577777666 44454
Q ss_pred hCCCCcceeEEEeecC--------------CcchHHHHHHHHHHhCCCEE-Eeccccccc
Q 013498 275 NTPGIENVVISTHCQN--------------DLGLSTANTIAGACAGARQV-EVTINGIGE 319 (442)
Q Consensus 275 ~~p~~~~v~i~~H~HN--------------DlGLA~ANalaAl~aGa~~v-d~Tv~GlGe 319 (442)
. ++..+.+++.+-| ++---+...-.|.++|.+.| -+-+.||||
T Consensus 172 a--Gv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge 229 (371)
T PRK09240 172 L--GLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSD 229 (371)
T ss_pred c--CCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCc
Confidence 3 2223455554422 33444445556677898855 667889987
No 280
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=89.97 E-value=6.9 Score=40.33 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=57.3
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcC
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~G 247 (442)
++.++.+|+.+|.+-+-.-+-.....+|+. ...+.+.++++.+++.|++.|.+.+..+ ..-+.+.+.+.++.+.+.+
T Consensus 102 l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~ 179 (374)
T PRK05799 102 LKILKSMGVNRLSIGLQAWQNSLLKYLGRI--HTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELN 179 (374)
T ss_pred HHHHHHcCCCEEEEECccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 455666799998886655555566667752 1245566788899999985454444322 2456788889999999999
Q ss_pred CcEEec
Q 013498 248 ATTLNI 253 (442)
Q Consensus 248 ad~I~l 253 (442)
++.|.+
T Consensus 180 ~~~is~ 185 (374)
T PRK05799 180 PEHISC 185 (374)
T ss_pred CCEEEE
Confidence 998755
No 281
>TIGR03586 PseI pseudaminic acid synthase.
Probab=89.97 E-value=8.4 Score=39.45 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec--cCcccccCHHHHH--HHHHHHHHhCCCCccee
Q 013498 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI--PDTVGITMPTEFG--KLIADIKANTPGIENVV 283 (442)
Q Consensus 208 ~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l--aDT~G~~~P~~v~--~li~~l~~~~p~~~~v~ 283 (442)
++++.+.+.|.+ |.++. +-++.+++...++.+.+.|...|.| | +.++-+|.... ..|..+++.++ ++
T Consensus 125 ~LL~~va~~gkP-vilst---G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~----~p 195 (327)
T TIGR03586 125 PLIRYVAKTGKP-IIMST---GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN----VP 195 (327)
T ss_pred HHHHHHHhcCCc-EEEEC---CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC----CC
Confidence 456666778876 76653 4468899999999999999876666 6 55666666554 34677888773 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
|++=-|- .| ..-+++|+..||+.|+.=+
T Consensus 196 VG~SDHt-~G--~~~~~aAva~GA~iIEkH~ 223 (327)
T TIGR03586 196 VGLSDHT-LG--ILAPVAAVALGACVIEKHF 223 (327)
T ss_pred EEeeCCC-Cc--hHHHHHHHHcCCCEEEeCC
Confidence 8885553 45 5778999999999987533
No 282
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=89.95 E-value=1.5 Score=43.05 Aligned_cols=143 Identities=22% Similarity=0.122 Sum_probs=90.5
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc---CCCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP---EDAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~---edasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
=+|.+.+-..+|-++- + +.+++-|+.++++|+ .|+.+- |-+.. ...+.++++.+.+.|-+.|-
T Consensus 37 yID~~K~g~Gt~~l~~--------~---~~l~eki~l~~~~gV-~v~~GGtl~E~a~~--q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 37 YIDFLKFGWGTSALYP--------E---EILKEKIDLAHSHGV-YVYPGGTLFEVAYQ--QGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp G-SEEEE-TTGGGGST--------C---HHHHHHHHHHHCTT--EEEE-HHHHHHHHH--TT-HHHHHHHHHHCT-SEEE
T ss_pred hccEEEecCceeeecC--------H---HHHHHHHHHHHHcCC-eEeCCcHHHHHHHh--cChHHHHHHHHHHcCCCEEE
Confidence 3677887766664322 2 335678999999998 477753 21111 34677888999999999999
Q ss_pred ccCcccccCHHHHHHHHHHHHHh-CCCCcceeEEEeecC-------CcchHHHHHHHHHHhCCCEE--Eec---cccccc
Q 013498 253 IPDTVGITMPTEFGKLIADIKAN-TPGIENVVISTHCQN-------DLGLSTANTIAGACAGARQV--EVT---INGIGE 319 (442)
Q Consensus 253 laDT~G~~~P~~v~~li~~l~~~-~p~~~~v~i~~H~HN-------DlGLA~ANalaAl~aGa~~v--d~T---v~GlGe 319 (442)
+.|..--+.+++-.++|+.+++. + .+.-++.-.+ |...-+-.+...++|||++| ++- -+|+=+
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf----~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~ 178 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGF----KVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYD 178 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTS----EEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCC----EEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccC
Confidence 99999999999999999999876 3 2555665443 35566778899999999996 332 227777
Q ss_pred ccCcccHHHHHHHHHhc
Q 013498 320 RAGNASLEEVVMAFKCR 336 (442)
Q Consensus 320 raGNa~lEevv~~L~~~ 336 (442)
..||...+.+...+...
T Consensus 179 ~~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 179 NDGEVRTDLVEKIIERL 195 (244)
T ss_dssp TTS-B-HHHHHHHHTTS
T ss_pred CCCCccHHHHHHHHHhC
Confidence 89999988877666543
No 283
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=89.88 E-value=7.7 Score=39.98 Aligned_cols=141 Identities=23% Similarity=0.263 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceE--------eeecccc-------hh
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--------CGLSRCN-------ER 163 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i--------~~~~r~~-------~~ 163 (442)
..+.-++=+..|.++|.+.+-+..| ..++.+.++.|.+...-.+-.+-.+-+.+ +.-.|.| ++
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~ 117 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKRDE 117 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHH
Confidence 3455566677899999999999887 45667788888776422110000000000 0001222 33
Q ss_pred hHHHHHHHHHhCCCC-EEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILG 241 (442)
Q Consensus 164 dI~~a~e~l~~~g~~-~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~ 241 (442)
.++..+++.++.+++ ||.+--..-+-.+..+++. +.+..++-+.+.++.+.++|+..+.+++- -+|+....+..+
T Consensus 118 ~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K---sS~v~~~i~ayr 194 (360)
T PRK00366 118 RVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK---ASDVQDLIAAYR 194 (360)
T ss_pred HHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHH
Confidence 455556666667777 6766555556677778876 88889999999999999999977777762 244454555444
Q ss_pred HHH
Q 013498 242 EVI 244 (442)
Q Consensus 242 ~~~ 244 (442)
.+.
T Consensus 195 lla 197 (360)
T PRK00366 195 LLA 197 (360)
T ss_pred HHH
Confidence 444
No 284
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=89.86 E-value=18 Score=34.14 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccCccccc---CHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPDTVGIT---MPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laDT~G~~---~P~~v~~li~~l~~~~p~~~-~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
.+.+....-++.+.+.|||.|-+.=-.|.. .-+.+.+.+..+++...+.. .+.++.-.-++- .=.--+..|+++|
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~-~i~~a~ria~e~G 144 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE-EIIKACEIAIEAG 144 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH-HHHHHHHHHHHhC
Confidence 444555566777888888887776666643 23556677777777654321 122333222211 2222366799999
Q ss_pred CCEEEecccccccccCcccHHHHHHHHH
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
||+|-++ -|.+ .+++.+|++-...+
T Consensus 145 aD~IKTs-TG~~--~~~at~~~v~~~~~ 169 (203)
T cd00959 145 ADFIKTS-TGFG--PGGATVEDVKLMKE 169 (203)
T ss_pred CCEEEcC-CCCC--CCCCCHHHHHHHHH
Confidence 9999999 3332 36678876544443
No 285
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=89.86 E-value=4.8 Score=38.89 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHH--HHHHHHHHHhCCCCcceeEEEeec-CCcchHHHHHHHHHHhC
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEF--GKLIADIKANTPGIENVVISTHCQ-NDLGLSTANTIAGACAG 306 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v--~~li~~l~~~~p~~~~v~i~~H~H-NDlGLA~ANalaAl~aG 306 (442)
-.|+..+.+.++.+.+.|+|.+-+==.-|...|.-. .+.++++++..|+ +++.+|.| +|-...+ -.+.++|
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~---~~lDvHLm~~~p~~~i---~~~~~~G 88 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPN---TFLDCHLMVSNPEKWV---DDFAKAG 88 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCC---CCEEEEECCCCHHHHH---HHHHHcC
Confidence 356778888888898889887544222277777632 4788889987764 77999999 4433332 4666889
Q ss_pred CCEEEecccccccccCcccHHHHHHHHHhccccccCC--ccCCCChhHHHHHH
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGG--LYTGINTRHIVMAS 357 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G--~~tgidl~~L~~ls 357 (442)
|++|.. -+ | ++...+++.+..++..|.. -| +.+.-+.+.+.++.
T Consensus 89 ad~itv--H~--e-a~~~~~~~~l~~ik~~G~~--~gval~p~t~~e~l~~~l 134 (228)
T PTZ00170 89 ASQFTF--HI--E-ATEDDPKAVARKIREAGMK--VGVAIKPKTPVEVLFPLI 134 (228)
T ss_pred CCEEEE--ec--c-CCchHHHHHHHHHHHCCCe--EEEEECCCCCHHHHHHHH
Confidence 999844 32 2 1222266777777776532 13 23444556665443
No 286
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=89.83 E-value=8.6 Score=38.68 Aligned_cols=126 Identities=14% Similarity=0.122 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc----------c---ccCHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV----------G---ITMPT 263 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~----------G---~~~P~ 263 (442)
.+.++.++.+.+.++.. .++ |...+++++-.++ .+.+.++.+.++|+..|+|-|.+ | ...++
T Consensus 58 l~~~e~~~~~~~I~~~~---~lP-v~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~e 132 (290)
T TIGR02321 58 LSMSTHLEMMRAIASTV---SIP-LIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIE 132 (290)
T ss_pred CCHHHHHHHHHHHHhcc---CCC-EEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHH
Confidence 46777777766655543 455 8888866555555 69999999999999999999975 1 35677
Q ss_pred HHHHHHHHHHHhCCCCcceeEEEee-----cCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHh
Q 013498 264 EFGKLIADIKANTPGIENVVISTHC-----QNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (442)
Q Consensus 264 ~v~~li~~l~~~~p~~~~v~i~~H~-----HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~ 335 (442)
++.+.|+..++.-.+. +..|-.-+ -..+--|+.-+.+..+||||.|=.- | +..+.|++....+.
T Consensus 133 e~~~kI~Aa~~a~~~~-d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~--~-----~~~~~~ei~~~~~~ 201 (290)
T TIGR02321 133 EFQGKIAAATAARADR-DFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIH--S-----RQKTPDEILAFVKS 201 (290)
T ss_pred HHHHHHHHHHHhCCCC-CEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEec--C-----CCCCHHHHHHHHHh
Confidence 7788888777653221 23332211 1123467777888899999987431 1 23556666555543
No 287
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=89.72 E-value=12 Score=40.48 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHH-hHcCCCEEEEc--cCCCChhH-HHHHHHHHHHhcccccccCCccceEeeecccch--hhHHHHHHH
Q 013498 98 LTSKEKLDIARQL-AKLGVDIIEAG--FPAASKED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE--RDIKTAWEA 171 (442)
Q Consensus 98 fs~e~kl~ia~~L-~~~GV~~IEvG--~p~~~~~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~--~dI~~a~e~ 171 (442)
.+.+..++=++.| .+.|+..|.+. .|...++. .+.++.|.+..+ +.....+.+|.+. .| +.-++.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~--------l~i~w~~~~r~~~i~~d-~ell~~ 292 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNP--------ISVTWGINTRVTDIVRD-ADILHL 292 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCC--------CCeEEEEecccccccCC-HHHHHH
Confidence 4666655555555 45799988663 23333333 234444443210 1112333344321 12 223455
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHcCCcE
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~Gad~ 250 (442)
++.+|..+|.+=+-+.+......+++.. ..++..++++.++++|+. +..+..- ...-+.+.+.+.++.+.+.+++.
T Consensus 293 l~~aG~~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~-~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~ 369 (497)
T TIGR02026 293 YRRAGLVHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNIL-SEAQFITGFENETDETFEETYRQLLDWDPDQ 369 (497)
T ss_pred HHHhCCcEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCc-EEEEEEEECCCCCHHHHHHHHHHHHHcCCCc
Confidence 6677998887744443334555666532 245667889999999985 4333221 12345678889999999999988
Q ss_pred EeccCcccccCHHHHHHHHHHHHHh
Q 013498 251 LNIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
+.+ ..++|..-..+.+.+++.
T Consensus 370 ~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 370 ANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred eEE----EEecCCCCcHHHHHHHhh
Confidence 766 578888877888877764
No 288
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=89.67 E-value=13 Score=40.24 Aligned_cols=78 Identities=9% Similarity=-0.041 Sum_probs=60.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC
Q 013498 227 DAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG 306 (442)
Q Consensus 227 dasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG 306 (442)
|+.+. +++.+.++...+.|||.|-+.=-.+.-.|+++...|+.+++.++ ++|++=+.| ..-+.+|+++|
T Consensus 160 ~a~~l--~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~----~pISIDT~~-----~~v~eaAL~aG 228 (499)
T TIGR00284 160 PTVAE--DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD----SPVIADTPT-----LDELYEALKAG 228 (499)
T ss_pred CCcch--HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC----CcEEEeCCC-----HHHHHHHHHcC
Confidence 55555 78888899999999999988744444456679999999988752 678887777 45567899999
Q ss_pred CCEEEecccc
Q 013498 307 ARQVEVTING 316 (442)
Q Consensus 307 a~~vd~Tv~G 316 (442)
|+.|+ ++.|
T Consensus 229 AdiIN-sVs~ 237 (499)
T TIGR00284 229 ASGVI-MPDV 237 (499)
T ss_pred CCEEE-ECCc
Confidence 99998 5655
No 289
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.64 E-value=10 Score=35.86 Aligned_cols=151 Identities=16% Similarity=0.121 Sum_probs=80.0
Q ss_pred ceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChH-HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCC
Q 013498 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGI-HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAG 229 (442)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~-h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edas 229 (442)
|.+.-++-...+++..+.+.++.+|.+.|.+-.+.... +....+|-+.+...+.+.+.++..++. ++. |.+.... +
T Consensus 56 p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk~r~-~ 133 (231)
T cd02801 56 PLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVKIRL-G 133 (231)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEEEee-c
Confidence 33433333356777777777777899998886554322 222224444444445555666666553 322 3332211 1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcccc--cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh-C
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGI--TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA-G 306 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~G~--~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a-G 306 (442)
-.+.+...++++.+.++|++.|.+.+-... ..+..-.+.++.+++... ++|..-. +.. -...+..+++. |
T Consensus 134 ~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~----ipvi~~G--gi~-~~~d~~~~l~~~g 206 (231)
T cd02801 134 WDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS----IPVIANG--DIF-SLEDALRCLEQTG 206 (231)
T ss_pred cCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC----CeEEEeC--CCC-CHHHHHHHHHhcC
Confidence 111157788999999999999987654321 111123455666776542 4454422 111 13344455555 6
Q ss_pred CCEEE
Q 013498 307 ARQVE 311 (442)
Q Consensus 307 a~~vd 311 (442)
|+.|-
T Consensus 207 ad~V~ 211 (231)
T cd02801 207 VDGVM 211 (231)
T ss_pred CCEEE
Confidence 66653
No 290
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.62 E-value=3 Score=43.84 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccc
Q 013498 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~ 315 (442)
-.+.++.+.++|+|.|.| |+.. ..+..+.++++.+++.+|+ +.|-+.- -.-...+..++++||+.|-+
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~---~~vi~g~----V~T~e~a~~l~~aGaD~I~v--- 221 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPN---LDLIAGN----IVTKEAALDLISVGADCLKV--- 221 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCC---CcEEEEe----cCCHHHHHHHHHcCCCEEEE---
Confidence 457788888999999998 7665 4478899999999999986 3333221 22355778899999999984
Q ss_pred cccc
Q 013498 316 GIGE 319 (442)
Q Consensus 316 GlGe 319 (442)
|+|.
T Consensus 222 G~g~ 225 (404)
T PRK06843 222 GIGP 225 (404)
T ss_pred CCCC
Confidence 5554
No 291
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=89.62 E-value=11 Score=36.04 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=80.3
Q ss_pred HHHHHHHHHhHcCCCEEEE----ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 102 EKLDIARQLAKLGVDIIEA----GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEv----G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
+=+++++.+.+.|++.+=+ +.....+.+.+.++.+++... .|...+-.-...+|++.++++ |+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~---------~pi~~ggGI~~~ed~~~~~~~----Ga 95 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETG---------VPVQVGGGIRSLEDVEKLLDL----GV 95 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcC---------CCEEEeCCcCCHHHHHHHHHc----CC
Confidence 5677899999999987765 222223345778888877532 133443333467888877764 88
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--C------CCCCC-CHHHHHHHHHHHHHcCC
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--E------DAGRS-DRKFLYEILGEVIKVGA 248 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--e------dasr~-d~~~l~~~~~~~~~~Ga 248 (442)
+.|.+ .+.- ++....+.+.+++.|.+.+.++. - ...+. ......++++.+.+.|+
T Consensus 96 ~~vvl--gs~~--------------l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~ 159 (230)
T TIGR00007 96 DRVII--GTAA--------------VENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGL 159 (230)
T ss_pred CEEEE--ChHH--------------hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCC
Confidence 87643 2211 11112233445555533233221 0 11111 11234577888899999
Q ss_pred cEEeccCcc--cccCHHHHHHHHHHHHHhC
Q 013498 249 TTLNIPDTV--GITMPTEFGKLIADIKANT 276 (442)
Q Consensus 249 d~I~laDT~--G~~~P~~v~~li~~l~~~~ 276 (442)
+.+.+-|-. |...... .++++.+++..
T Consensus 160 ~~ii~~~~~~~g~~~g~~-~~~i~~i~~~~ 188 (230)
T TIGR00007 160 EGIIYTDISRDGTLSGPN-FELTKELVKAV 188 (230)
T ss_pred CEEEEEeecCCCCcCCCC-HHHHHHHHHhC
Confidence 987766543 4444322 56677777664
No 292
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.61 E-value=9.9 Score=37.45 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=90.3
Q ss_pred HHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec-ccchhhHHHHHHHHHhCCCCEEEEee-c
Q 013498 108 RQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS-RCNERDIKTAWEAVKYAKRPRIHTFI-A 185 (442)
Q Consensus 108 ~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~-r~~~~dI~~a~e~l~~~g~~~v~i~~-~ 185 (442)
+.+.+ .+|.+-+|..-.. .++.++.+++.. .|++.--+ .+..+|+..|++.+...|.+.|.+.= .
T Consensus 93 ~~~~e-~vdilqIgs~~~~--n~~LL~~va~tg----------kPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 93 EEAYD-YLDVIQVGARNMQ--NFEFLKTLSHID----------KPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERG 159 (250)
T ss_pred HHHHh-cCCEEEECccccc--CHHHHHHHHccC----------CeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccc
Confidence 33444 4778888755332 366777777641 14444333 45789999999998888887776654 3
Q ss_pred CChHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE----------ecc
Q 013498 186 TSGIHMEHKLRKTKQQVVEIARSMVKFARS-LGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL----------NIP 254 (442)
Q Consensus 186 ~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~-~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I----------~la 254 (442)
++.. .......++ + ..+...|+ .++. |.+++- -+--..+++..++++++.+|||.+ .++
T Consensus 160 ~~~Y------~~~~~n~~d-l-~ai~~lk~~~~lP-Vivd~S-Hs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~s 229 (250)
T PRK13397 160 VRGY------DVETRNMLD-I-MAVPIIQQKTDLP-IIVDVS-HSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHALS 229 (250)
T ss_pred cCCC------CCccccccC-H-HHHHHHHHHhCCC-eEECCC-CCCcccchHHHHHHHHHHhCCCEEEEEecCCcccccC
Confidence 3322 111000111 1 22333343 5675 777553 122245788999999999999933 367
Q ss_pred CcccccCHHHHHHHHHHHHH
Q 013498 255 DTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 255 DT~G~~~P~~v~~li~~l~~ 274 (442)
|-.=.++|+++.+|++.++.
T Consensus 230 D~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 230 DAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred chhhhCCHHHHHHHHHHhcc
Confidence 88888999999999998864
No 293
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=89.60 E-value=8.5 Score=36.67 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhHcCCCEEEEcc----CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAGF----PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~----p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.+-.++++.+.+.|++.+.+-- ....+.+++.++.+++... .|.+.+-.-...+|++.+++. |
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~---------~pv~~~GGI~~~ed~~~~~~~----G 96 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVD---------IPVQVGGGIRSLETVEALLDA----G 96 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCC---------CCEEEcCCcCCHHHHHHHHHc----C
Confidence 3668899999999999888742 2223456788888887632 244444443477888877664 7
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC------CCC-CCCHHHHHHHHHHHHHcCCc
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAG-RSDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e------das-r~d~~~l~~~~~~~~~~Gad 249 (442)
++.|.+ ...-. .+ .+.+.++++...+. + .+.+..- ... ..+...+.++++.+.+.|++
T Consensus 97 a~~vil--g~~~l-------~~----~~~l~ei~~~~~~~-i-~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~ 161 (233)
T PRK00748 97 VSRVII--GTAAV-------KN----PELVKEACKKFPGK-I-VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVK 161 (233)
T ss_pred CCEEEE--CchHH-------hC----HHHHHHHHHHhCCC-c-eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCC
Confidence 777643 22111 01 12233344433221 1 1222210 000 00112345778888899999
Q ss_pred EEeccCcc--cccCHHHHHHHHHHHHHhCC
Q 013498 250 TLNIPDTV--GITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 250 ~I~laDT~--G~~~P~~v~~li~~l~~~~p 277 (442)
.|.+-|.. |...-. -.++++.+++.++
T Consensus 162 ~ii~~~~~~~g~~~G~-d~~~i~~l~~~~~ 190 (233)
T PRK00748 162 AIIYTDISRDGTLSGP-NVEATRELAAAVP 190 (233)
T ss_pred EEEEeeecCcCCcCCC-CHHHHHHHHHhCC
Confidence 77666543 443331 2466677776654
No 294
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=89.51 E-value=12 Score=39.62 Aligned_cols=148 Identities=20% Similarity=0.209 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHhHcCC----CEEEEc--cCCC-ChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHHH-H
Q 013498 98 LTSKEKLDIARQLAKLGV----DIIEAG--FPAA-SKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKT-A 168 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV----~~IEvG--~p~~-~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~-a 168 (442)
+...-..+|.......|. +.|=+| -|.. ++++.+ .+..|.+... ....+ ..|+. -+++.+++. -
T Consensus 67 Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~-~~~~~----~Eiti--E~nP~~~~~e~ 139 (416)
T COG0635 67 YLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN-DLDPD----AEITI--EANPGTVEAEK 139 (416)
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc-cCCCC----ceEEE--EeCCCCCCHHH
Confidence 333334444444444544 444444 4653 455555 4455555442 11110 12321 235555543 2
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC-CCCHHHHHHHHHHHHHcC
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas-r~d~~~l~~~~~~~~~~G 247 (442)
++.++..|+.||.+-+=.-+--.++.+|+.-. -+.+.++++.+++.|+..|.+.+..+- --+.+.+.+-++.+++++
T Consensus 140 ~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~ 217 (416)
T COG0635 140 FKALKEAGVNRISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELG 217 (416)
T ss_pred HHHHHHcCCCEEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCC
Confidence 56677789999998777777777788877432 355678899999999987777654332 234677889999999999
Q ss_pred CcEEecc
Q 013498 248 ATTLNIP 254 (442)
Q Consensus 248 ad~I~la 254 (442)
+|+|.+-
T Consensus 218 pdhis~y 224 (416)
T COG0635 218 PDHLSLY 224 (416)
T ss_pred CCEEEEe
Confidence 9988764
No 295
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=89.38 E-value=19 Score=36.16 Aligned_cols=125 Identities=11% Similarity=0.062 Sum_probs=74.3
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc---
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--- 249 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar-~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad--- 249 (442)
..|+..+.+... + ......+.+.++.++.+.+.++.++ +.|+. +.+...-....+++.+.+.++.+.+.+.+
T Consensus 84 ~~Gvt~~E~~~~--p-~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 159 (325)
T cd01320 84 ADGVVYAEIRFS--P-QLHTRRGLSFDEVVEAVLRGLDEAEAEFGIK-ARLILCGLRHLSPESAQETLELALKYRDKGVV 159 (325)
T ss_pred HcCCEEEEEEeC--c-hhhccCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEEEecCCCCHHHHHHHHHHHHhccCCCEE
Confidence 357765554432 2 1122457789999998888887764 45764 55543211223567777777777766544
Q ss_pred EEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH-hCCCE
Q 013498 250 TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQ 309 (442)
Q Consensus 250 ~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~-aGa~~ 309 (442)
.+.++..-....++.+..++...++. ++++.+|+.-+.+ ..+...|++ .|++.
T Consensus 160 g~~l~~~~~~~~~~~~~~~~~~A~~~-----g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 160 GFDLAGDEVGFPPEKFVRAFQRAREA-----GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred EeecCCCCCCCCHHHHHHHHHHHHHC-----CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 33333222234678888888888775 2678888876533 234456666 78754
No 296
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.37 E-value=16 Score=35.47 Aligned_cols=172 Identities=17% Similarity=0.103 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHH----H-------HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCH-
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHME----H-------KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDR- 233 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~----~-------~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~- 233 (442)
..++.+..+|++.+++=+|.||..+. . +-|.+.+ ...+.++..|+. ... +.+- +..++
T Consensus 18 ~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~----~~~~~~~~vr~~~~~p-v~lm----~y~n~~ 88 (242)
T cd04724 18 EILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLK----DVLELVKEIRKKNTIP-IVLM----GYYNPI 88 (242)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHH----HHHHHHHHHhhcCCCC-EEEE----EecCHH
Confidence 33444555678888876666653221 1 1122322 344566666654 233 3221 22232
Q ss_pred -HH-HHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 234 -KF-LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 234 -~~-l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
.+ +.++++.+.++|++.+.++|- .+++..++++.++++- +...+=+--+.-......+.....|.-++=
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g-----~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~ 159 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYG-----LDLIFLVAPTTPDERIKKIAELASGFIYYV 159 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcC-----CcEEEEeCCCCCHHHHHHHHhhCCCCEEEE
Confidence 11 356788889999999999995 5788889999998863 223332222222222223333233433333
Q ss_pred ecccccccccC-cccHHHHHHHHHhccccccCCccCCCChh-HHHHHH
Q 013498 312 VTINGIGERAG-NASLEEVVMAFKCRGEHILGGLYTGINTR-HIVMAS 357 (442)
Q Consensus 312 ~Tv~GlGeraG-Na~lEevv~~L~~~g~~~~~G~~tgidl~-~L~~ls 357 (442)
+.-.|-|.+.+ +..+.+.+..++... +..--+.-||+.. .+.++.
T Consensus 160 s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~ 206 (242)
T cd04724 160 SRTGVTGARTELPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVA 206 (242)
T ss_pred eCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHH
Confidence 33444555554 345666667676542 1111234566633 554443
No 297
>PRK12677 xylose isomerase; Provisional
Probab=89.31 E-value=11 Score=39.50 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHH----HHHHHHHHHHHHHcCCCeEEEccC
Q 013498 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQV----VEIARSMVKFARSLGCDDVEFSPE 226 (442)
Q Consensus 165 I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~----l~~~~~~v~~ar~~G~~~V~f~~e 226 (442)
+.++++.....|.+.|.++..-... .+-...+.++. .+.+.++.++|+++|.. |.+.+|
T Consensus 116 ~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~g-V~laIE 178 (384)
T PRK12677 116 VLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYD-LRFALE 178 (384)
T ss_pred HHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEc
Confidence 4455666666799988887442100 00011233334 45555778889887753 555555
No 298
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=89.30 E-value=7.9 Score=39.82 Aligned_cols=136 Identities=13% Similarity=0.103 Sum_probs=78.5
Q ss_pred HHHHhCCCCEEEEeec--------CChH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-C----CC---eEEEccCC--CC
Q 013498 170 EAVKYAKRPRIHTFIA--------TSGI--HMEHKLRKTKQQVVEIARSMVKFARSL-G----CD---DVEFSPED--AG 229 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~--------~Sd~--h~~~~l~~s~~e~l~~~~~~v~~ar~~-G----~~---~V~f~~ed--as 229 (442)
+..+.+|.|.|.+..+ .|+. +...++|=+.+.-.+-+.+.++.+|+. | .+ .+.+++.+ ..
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~ 230 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEP 230 (353)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCC
Confidence 3346689999888653 2332 233456667777777777888777764 4 22 24555533 22
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcc----cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTV----GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~----G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
-.+.+...++++.+.++|+|.|.+.-.. ....|.....+++.+++.+.. +++|-.-.- .- -...+..+++.
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~--~iPVi~~Gg--i~-t~e~ae~~l~~ 305 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAG--RLPLIAVGS--IN-TPDDALEALET 305 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCC--CCCEEEECC--CC-CHHHHHHHHHc
Confidence 3457788899999999999999884311 111121123455666665521 245554332 11 13445666666
Q ss_pred CCCEE
Q 013498 306 GARQV 310 (442)
Q Consensus 306 Ga~~v 310 (442)
||+.|
T Consensus 306 gaD~V 310 (353)
T cd04735 306 GADLV 310 (353)
T ss_pred CCChH
Confidence 76654
No 299
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=89.26 E-value=2.2 Score=44.41 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc-------cccCHHHHHHHHHHHHHhC
Q 013498 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-------GITMPTEFGKLIADIKANT 276 (442)
Q Consensus 204 ~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~-------G~~~P~~v~~li~~l~~~~ 276 (442)
+.+.+.++.+|+.+. .|.+.. ++....++++.+.++|+|.|.+-.|+ |...|..+.++++. +
T Consensus 119 ~l~~~ii~~vr~a~V-tvkiRl------~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~----~ 187 (369)
T TIGR01304 119 ELLGERIAEVRDSGV-ITAVRV------SPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE----L 187 (369)
T ss_pred HHHHHHHHHHHhcce-EEEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH----C
Confidence 455667777777764 244433 34577799999999999999987653 55678766666554 3
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
+ ++|-. .+ -.....++.++++||+.|.
T Consensus 188 ~----IPVI~---G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 188 D----VPVIA---GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred C----CCEEE---eC-CCCHHHHHHHHHcCCCEEE
Confidence 2 44542 33 3445667888999999998
No 300
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=89.23 E-value=58 Score=39.23 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=115.5
Q ss_pred CCHHHHHHH----HHHHhHcCCCEEEEc-cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccc-------hhh
Q 013498 98 LTSKEKLDI----ARQLAKLGVDIIEAG-FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCN-------ERD 164 (442)
Q Consensus 98 fs~e~kl~i----a~~L~~~GV~~IEvG-~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~-------~~d 164 (442)
++.++..+. ++.|.+.|||.|=+- +| +..+.. ++..+.+....... . .|.++.++-.. -.+
T Consensus 157 it~del~~~y~eQi~~L~e~GVDllliETi~--d~~EakAal~a~~~~~~~~~~---~-lPv~vS~T~~d~~Gr~lsG~~ 230 (1229)
T PRK09490 157 VTFDELVAAYREQTRGLIEGGADLILIETIF--DTLNAKAAIFAVEEVFEELGV---R-LPVMISGTITDASGRTLSGQT 230 (1229)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEeeeC--CHHHHHHHHHHHHHHHhhcCC---C-CeEEEEEEEECCCCccCCCCc
Confidence 566666665 677888999987663 44 223322 22222221100000 1 24444433211 246
Q ss_pred HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccC-------CCCCCCHHHH
Q 013498 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPE-------DAGRSDRKFL 236 (442)
Q Consensus 165 I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~e-------dasr~d~~~l 236 (442)
++.++..+...++..|.+-++..+-++. +.++..... .. .+.+-+. .....+|+.+
T Consensus 231 ~ea~~~~l~~~~~~avGlNCs~GP~~m~---------------~~l~~l~~~~~~-pi~vyPNAGlP~~~~~yd~tPe~~ 294 (1229)
T PRK09490 231 TEAFWNSLRHAKPLSIGLNCALGADELR---------------PYVEELSRIADT-YVSAHPNAGLPNAFGEYDETPEEM 294 (1229)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHHHHH---------------HHHHHHHHhcCC-eEEEEeCCCCCCCCCCCCCCHHHH
Confidence 7788877777788888776665554332 233333222 22 2443221 1234578889
Q ss_pred HHHHHHHHHcC-CcEEeccCcccccCHHHHHHHHHHHHHhCCCCc-ce----------eEEEe-----------ec----
Q 013498 237 YEILGEVIKVG-ATTLNIPDTVGITMPTEFGKLIADIKANTPGIE-NV----------VISTH-----------CQ---- 289 (442)
Q Consensus 237 ~~~~~~~~~~G-ad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~-~v----------~i~~H-----------~H---- 289 (442)
.+.++.+.+.| +..|.=|= -.+|+.++.+-+.++..-|... .. ++.+. ++
T Consensus 295 a~~~~~~~~~G~v~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~ 371 (1229)
T PRK09490 295 AAQIGEFAESGFLNIVGGCC---GTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGS 371 (1229)
T ss_pred HHHHHHHHHcCCCCEEEecC---CCCHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhcc
Confidence 99999999998 77765321 1479999988888865433210 00 01111 11
Q ss_pred ---------CCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 290 ---------NDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 290 ---------NDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
.|+.-++.-+..-+++||++||+.+ |.+.+.+-..++.++..+.
T Consensus 372 k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-g~~~id~~eem~rvv~~i~ 424 (1229)
T PRK09490 372 AKFARLIKEEDYDEALDVARQQVENGAQIIDINM-DEGMLDSEAAMVRFLNLIA 424 (1229)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHH
Confidence 3344566677778899999999974 3444444444555555554
No 301
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=89.16 E-value=21 Score=37.41 Aligned_cols=147 Identities=7% Similarity=-0.012 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHhHc-CCCEEEE----ccCCCChhHH--HHHHHHHHHhcccccccCCccceEeeecccchhhHHHH
Q 013498 96 ATLTSKEKLDIARQLAKL-GVDIIEA----GFPAASKEDF--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~-GV~~IEv----G~p~~~~~d~--e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (442)
..|+.++-.++++.+.+. |++.+.+ |-|-..+.++ +.++.+.+..... ++...|..-+-...+ ..
T Consensus 46 ~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~-----~i~~~i~TNG~ll~~---e~ 117 (412)
T PRK13745 46 HVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGR-----QIDNCIQTNGTLLTD---EW 117 (412)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCC-----ceEEEEeecCEeCCH---HH
Confidence 348888888888887764 6777776 4465555432 2222222221110 111112111111112 22
Q ss_pred HHHHHhCCCCEEEEeecCC-hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 169 WEAVKYAKRPRIHTFIATS-GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~S-d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
.+.+++.++ .|.+++-.. ++|-...-...-....+++.+.++.+++.|+. +.+.. -.++.+.+++.++++.+.+.|
T Consensus 118 ~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~-~~i~~-vv~~~n~~~~~e~~~~~~~lg 194 (412)
T PRK13745 118 CEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE-WNAMA-VVNDFNADYPLDFYHFFKELD 194 (412)
T ss_pred HHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC-EEEEE-EEcCCccccHHHHHHHHHHcC
Confidence 334445565 677764443 33443321111124577788888889999975 44332 235566677788888899999
Q ss_pred CcEEec
Q 013498 248 ATTLNI 253 (442)
Q Consensus 248 ad~I~l 253 (442)
++.+.+
T Consensus 195 ~~~~~~ 200 (412)
T PRK13745 195 CHYIQF 200 (412)
T ss_pred CCeEEE
Confidence 987765
No 302
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=89.11 E-value=23 Score=37.46 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC------CCHHHHHHHHHHHHHcCCcEEecc-Ccc-----cc--cCHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR------SDRKFLYEILGEVIKVGATTLNIP-DTV-----GI--TMPT 263 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr------~d~~~l~~~~~~~~~~Gad~I~la-DT~-----G~--~~P~ 263 (442)
.+++.++++.+.+..+.+.... |.+.+|.... .+++.+.++++.+.+ .+++.+| ||. |. -+|+
T Consensus 247 ~~ee~i~~i~e~L~~~la~~~g-V~IlLENmag~g~~lG~~~eeL~~Iid~v~~--~~rlGvCLDTcHafaAGydl~t~e 323 (413)
T PTZ00372 247 SKEEGIKNIADCINKAHEETKS-VIIVLENTAGQKNSVGSKFEDLRDIIALVED--KSRVGVCLDTCHLFAAGYDIRTKE 323 (413)
T ss_pred CHHHHHHHHHHHHHHHHhCcCC-CEEEEecCCCCCCcccCCHHHHHHHHHhcCC--cCCeEEEEEHHHHHhcCCCCCcHH
Confidence 3456677777776666554332 4454443211 345666666655521 2344444 554 22 2556
Q ss_pred HHHHHHHHHHHhCCCCcceeEEEeecCCcc
Q 013498 264 EFGKLIADIKANTPGIENVVISTHCQNDLG 293 (442)
Q Consensus 264 ~v~~li~~l~~~~p~~~~v~i~~H~HNDlG 293 (442)
.+.+++..+.+.++- +-.-.+|+||..|
T Consensus 324 ~~~~~l~~f~~~iGl--~rL~~vHLNDSk~ 351 (413)
T PTZ00372 324 SFDKVMKEFDEIVGL--KYLKAVHLNDSKS 351 (413)
T ss_pred HHHHHHHHHHHhcCh--hheeEEEEEcCCC
Confidence 666666666555431 1234677776544
No 303
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=89.05 E-value=6.9 Score=39.12 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC-CcEEec---c--Ccc-cc---cCHHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNI---P--DTV-GI---TMPTEFGK 267 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G-ad~I~l---a--DT~-G~---~~P~~v~~ 267 (442)
..++.++.+.+.. ++.+.. +.++. .-.+++.+.+.++.+.++| +|.|-| | ... |. ..|+.+.+
T Consensus 75 g~~~~~~~~~~~~---~~~~~p-~i~si---~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~e 147 (301)
T PRK07259 75 GVDAFIEEELPWL---EEFDTP-IIANV---AGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYE 147 (301)
T ss_pred CHHHHHHHHHHHH---hccCCc-EEEEe---ccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHH
Confidence 4556666555432 233443 44444 2245788889999999999 998866 1 111 22 35899999
Q ss_pred HHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 268 LIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 268 li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+++.+++.+. ++|.+..=-+.--...-+-.+.++|++.|+.
T Consensus 148 iv~~vr~~~~----~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 148 VVKAVKEVVK----VPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHhcC----CCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 9999999862 5677766434333334445677889998865
No 304
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=89.03 E-value=12 Score=39.66 Aligned_cols=86 Identities=9% Similarity=0.005 Sum_probs=60.8
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC-CCCCCHHHHHHHHHHHHHc
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED-AGRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed-asr~d~~~l~~~~~~~~~~ 246 (442)
.++.++.+|+.+|.+-+-..+-...+.+++.. ..+.+.++++.+++.|+..|.+.+.. ...-+.+.+.+.++.+.+.
T Consensus 143 ~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l 220 (430)
T PRK08208 143 KLALLAARGVNRLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVY 220 (430)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhC
Confidence 35566678999998865555445666677642 35667789999999998644443322 2446778888999999999
Q ss_pred CCcEEeccC
Q 013498 247 GATTLNIPD 255 (442)
Q Consensus 247 Gad~I~laD 255 (442)
|++.|.+-.
T Consensus 221 ~~~~is~y~ 229 (430)
T PRK08208 221 RPEELFLYP 229 (430)
T ss_pred CCCEEEEcc
Confidence 998777654
No 305
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.99 E-value=3.6 Score=41.49 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEE-eecCCcchHHHHHHHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVIST-HCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~-H~HNDlGLA~ANalaAl~ 304 (442)
+..|.+-+.++++.+.+.|++.|.++=|+|= ++++|-.++++..++...+ .++|-+ .+.|+.--|++.+-.|-+
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--rvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--RVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--CCcEEEecCCCcHHHHHHHHHHHHh
Confidence 6799999999999999999999999999994 8999999999999998865 466666 568999999999999999
Q ss_pred hCCCEEEe
Q 013498 305 AGARQVEV 312 (442)
Q Consensus 305 aGa~~vd~ 312 (442)
.||+.+=+
T Consensus 98 ~Gad~il~ 105 (299)
T COG0329 98 LGADGILV 105 (299)
T ss_pred cCCCEEEE
Confidence 99999755
No 306
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=88.97 E-value=39 Score=36.88 Aligned_cols=177 Identities=16% Similarity=0.119 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHHHhHcC--CCEEEEc----cCCCChhH-H-HHHHHHHHHhccc---------------ccccCCccce
Q 013498 97 TLTSKEKLDIARQLAKLG--VDIIEAG----FPAASKED-F-EAVRTIAKEVGNA---------------VDAESGYVPV 153 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~G--V~~IEvG----~p~~~~~d-~-e~v~~l~~~~~~~---------------~~~~~~l~~~ 153 (442)
.-+..|...=++.|.++| ++.||+- .+.+-|.+ . .+++.+.+....- ..+. . ...
T Consensus 114 ~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~-a-~~~ 191 (522)
T TIGR01211 114 YDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINET-S-KHR 191 (522)
T ss_pred CCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhc-c-cCC
Confidence 346788888888898888 6678883 34344443 2 3555554443110 0000 0 112
Q ss_pred Eeeecc-cchhhH-HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CC
Q 013498 154 ICGLSR-CNERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GR 230 (442)
Q Consensus 154 i~~~~r-~~~~dI-~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr 230 (442)
+.+++- ++++.+ +.-++.++..|+.+|.+=+=.-+-.....+|+. ...+.+.++++.+|+.|+. |.+.++.. .-
T Consensus 192 ~vgitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht~~~v~~Ai~~lr~~G~~-v~~~LM~GLPg 268 (522)
T TIGR01211 192 CVGLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HTVRDVVEATRLLRDAGLK-VVYHIMPGLPG 268 (522)
T ss_pred eEEEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCe-EEEEeecCCCC
Confidence 233221 222222 223556667899998885444444555555552 2245566789999999995 66654432 23
Q ss_pred CCHHHHHHHHHHHHH---cCCcEEeccCcc-------------c---ccCHHHHHHHHHHHHHhCCC
Q 013498 231 SDRKFLYEILGEVIK---VGATTLNIPDTV-------------G---ITMPTEFGKLIADIKANTPG 278 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~---~Gad~I~laDT~-------------G---~~~P~~v~~li~~l~~~~p~ 278 (442)
.+++...+.++.+.+ .++|.|.|--+. | ..++++..+++..+.+.+|.
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~ 335 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK 335 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 456666777777774 789988876633 2 24567777888888888873
No 307
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.95 E-value=13 Score=38.55 Aligned_cols=132 Identities=12% Similarity=0.080 Sum_probs=79.9
Q ss_pred HHHHhCCCCEEEEeecCC--------hH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC--eEEEccCC-----CCCC
Q 013498 170 EAVKYAKRPRIHTFIATS--------GI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD--DVEFSPED-----AGRS 231 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~S--------d~--h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~--~V~f~~ed-----asr~ 231 (442)
+..+.+|.|.|.|..+-. +. +....+|=|.|.-.+-+.+.++.+|+. |-. -+.+++++ ..-.
T Consensus 166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~ 245 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGP 245 (362)
T ss_pred HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCC
Confidence 334668999998754332 11 233445667777777777777777764 321 24566543 1124
Q ss_pred CHHH-HHHHHHHHHHcCCcEEeccCcccc-cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhC-CC
Q 013498 232 DRKF-LYEILGEVIKVGATTLNIPDTVGI-TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAG-AR 308 (442)
Q Consensus 232 d~~~-l~~~~~~~~~~Gad~I~laDT~G~-~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aG-a~ 308 (442)
+++. ..++++.+.+.|+|.|.+...--. ..|. ...+.+.+|+.++ ++|..-.-++ ...+..+++.| ||
T Consensus 246 ~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~-~~~~~~~ik~~~~----~pv~~~G~~~----~~~ae~~i~~G~~D 316 (362)
T PRK10605 246 NEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPY-SDAFREKVRARFH----GVIIGAGAYT----AEKAETLIGKGLID 316 (362)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeccccccCCccc-cHHHHHHHHHHCC----CCEEEeCCCC----HHHHHHHHHcCCCC
Confidence 5566 689999999999999988742100 0111 2345567787775 3454444333 56678888888 66
Q ss_pred EE
Q 013498 309 QV 310 (442)
Q Consensus 309 ~v 310 (442)
.|
T Consensus 317 ~V 318 (362)
T PRK10605 317 AV 318 (362)
T ss_pred EE
Confidence 55
No 308
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.89 E-value=7.7 Score=38.50 Aligned_cols=143 Identities=20% Similarity=0.253 Sum_probs=83.7
Q ss_pred HHHHHHHHhHcCCCEEEEcc---------CCC----ChhHHHHHHHHHHHhccccc-ccCCccceEeeecccchhhHHHH
Q 013498 103 KLDIARQLAKLGVDIIEAGF---------PAA----SKEDFEAVRTIAKEVGNAVD-AESGYVPVICGLSRCNERDIKTA 168 (442)
Q Consensus 103 kl~ia~~L~~~GV~~IEvG~---------p~~----~~~d~e~v~~l~~~~~~~~~-~~~~l~~~i~~~~r~~~~dI~~a 168 (442)
--.-++.++++|+|.|=+|. +.. .++.....+.+++-.++.+- .+ .| +.++.. .++-++.+
T Consensus 24 D~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D---mP-f~sy~~-~e~a~~na 98 (263)
T TIGR00222 24 DYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD---LP-FMSYAT-PEQALKNA 98 (263)
T ss_pred CHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC---CC-cCCCCC-HHHHHHHH
Confidence 34568899999999999973 211 12223455555554332200 00 12 223331 34445666
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----EccC----CC-----CCCC--H
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPE----DA-----GRSD--R 233 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~e----da-----sr~d--~ 233 (442)
.+.++++|.+.|++-.. ....+.++.+.+.|+. |. +.+. +. +|++ .
T Consensus 99 ~rl~~eaGa~aVkiEgg------------------~~~~~~i~~l~~~gIp-V~gHiGltPq~a~~~ggy~~qgrt~~~a 159 (263)
T TIGR00222 99 ARVMQETGANAVKLEGG------------------EWLVETVQMLTERGVP-VVGHLGLTPQSVNILGGYKVQGKDEEAA 159 (263)
T ss_pred HHHHHHhCCeEEEEcCc------------------HhHHHHHHHHHHCCCC-EEEecCCCceeEeecCCeeecCCCHHHH
Confidence 77777789999887542 2234566888889986 54 1110 11 3442 3
Q ss_pred HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
+.+.+-++++.++||+.|.|. +.|. ++.+.+.+.++
T Consensus 160 ~~~i~~A~a~e~AGA~~ivlE-----~vp~---~~a~~It~~l~ 195 (263)
T TIGR00222 160 KKLLEDALALEEAGAQLLVLE-----CVPV---ELAAKITEALA 195 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEEc-----CCcH---HHHHHHHHhCC
Confidence 477777888899999999985 3442 55556666654
No 309
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=88.88 E-value=24 Score=34.98 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=99.0
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhH--cCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeee
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAK--LGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL 157 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~--~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~ 157 (442)
+..+|-|+ ..-..|.++..++.+.-.+ -|+..+-+ +|. . ++...+.+...-... ..+..+.+|
T Consensus 11 ~~~ID~Tl------L~p~~T~~~I~~lc~eA~~~~~~faaVcV-~P~----~---v~~a~~~L~~~~~~~-vkv~tVigF 75 (257)
T PRK05283 11 LSLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICI-YPR----F---IPIARKTLREQGTPE-IRIATVTNF 75 (257)
T ss_pred HHHhcccC------CCCCCCHHHHHHHHHHHHhcCCCeeEEEE-CHH----H---HHHHHHHhcccCCCC-CeEEEEecC
Confidence 34566665 3456889999999999988 58888777 442 2 333333322100000 111223333
Q ss_pred ccc--c-hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHH
Q 013498 158 SRC--N-ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 158 ~r~--~-~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~ 234 (442)
-.- . ..-+..+.+++ ..|.+.|.+.+..+.+ ..-..+.+.+.+.+.++.+.. |.. +-+-+|...=++.+
T Consensus 76 P~G~~~t~~K~~Ea~~Ai-~~GAdEiD~Vinig~l-----k~g~~~~v~~ei~~v~~~~~~-~~~-lKVIlEt~~L~~ee 147 (257)
T PRK05283 76 PHGNDDIDIALAETRAAI-AYGADEVDVVFPYRAL-----MAGNEQVGFELVKACKEACAA-NVL-LKVIIETGELKDEA 147 (257)
T ss_pred CCCCCcHHHHHHHHHHHH-HcCCCEEeeeccHHHH-----hCCcHHHHHHHHHHHHHHhCC-Cce-EEEEEeccccCCHH
Confidence 211 1 11122233333 3499999998877643 123566777777777777652 442 55555543334444
Q ss_pred HHHHHHHHHHHcCCcEEeccCcc--cccCHHHHHHHHHHHHH
Q 013498 235 FLYEILGEVIKVGATTLNIPDTV--GITMPTEFGKLIADIKA 274 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~--G~~~P~~v~~li~~l~~ 274 (442)
.+.+.++.+.++|||-|-=+--. +-++|+.++-+.+.+++
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHh
Confidence 58899999999999966543222 34788888877776654
No 310
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.87 E-value=26 Score=34.74 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE-c----cCCCChhHHH-HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA-G----FPAASKEDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv-G----~p~~~~~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.+..+.-.++++.|.+.||+-|=+ | ++..+.+|.. .++...+.. + ..+.+.+..+.++ ++.+
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~-~---------~vi~gvg~~~~~~ai~~a- 84 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT-D---------KVIFQVGSLNLEESIELA- 84 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc-C---------CEEEEeCcCCHHHHHHHH-
Confidence 377888899999999999998876 4 4566666654 455555542 1 1355555444444 4444
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC--CCCHHHHHHHHHHHHHc
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLR-KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG--RSDRKFLYEILGEVIKV 246 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~-~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas--r~d~~~l~~~~~~~~~~ 246 (442)
+..+..|++.+.+..|.. +. .+.++..+-..+.++ .++.+-++.+..+ ..+++.+.++ .+.
T Consensus 85 ~~a~~~Gad~v~v~~P~y-------~~~~~~~~i~~yf~~v~~-----~lpv~iYn~P~~tg~~l~~~~l~~L----~~~ 148 (279)
T cd00953 85 RAAKSFGIYAIASLPPYY-------FPGIPEEWLIKYFTDISS-----PYPTFIYNYPKATGYDINARMAKEI----KKA 148 (279)
T ss_pred HHHHHcCCCEEEEeCCcC-------CCCCCHHHHHHHHHHHHh-----cCCEEEEeCccccCCCCCHHHHHHH----Hhc
Confidence 334667999887655532 22 244555454444444 4554556654433 3556655444 444
Q ss_pred CCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccH
Q 013498 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASL 326 (442)
Q Consensus 247 Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~l 326 (442)
....+.+.||.|-+ ..+.++ ++..++ +.+-+=+| ...+.++.+|++.. +.| .+|.-.
T Consensus 149 ~p~vvgiK~s~~d~--~~~~~~----~~~~~~-----~~v~~G~d-----~~~~~~l~~Ga~G~---i~~----~~n~~P 205 (279)
T cd00953 149 GGDIIGVKDTNEDI--SHMLEY----KRLVPD-----FKVYSGPD-----SLIFSALRSGLDGS---VAA----ASNYLP 205 (279)
T ss_pred CCCEEEEEeCccCH--HHHHHH----HHhCCC-----eEEEEccH-----HHHHHHHHcCCCeE---Eec----hhhccH
Confidence 56899999997744 333333 233332 33333222 35567788898765 333 357777
Q ss_pred HHHHHHHH
Q 013498 327 EEVVMAFK 334 (442)
Q Consensus 327 Eevv~~L~ 334 (442)
|.++...+
T Consensus 206 ~~~~~l~~ 213 (279)
T cd00953 206 EVFVKIKD 213 (279)
T ss_pred HHHHHHHH
Confidence 77665554
No 311
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.87 E-value=20 Score=35.59 Aligned_cols=120 Identities=17% Similarity=0.183 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhCCCCEEE--EeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC--CCCCCCHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIH--TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--DAGRSDRKFLYEI 239 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~--i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--dasr~d~~~l~~~ 239 (442)
+++.|++. |.+-|. +|+. |+ ...+.++++.+.++.|.+.|+..+.+.+- +.. .+++.+.-.
T Consensus 99 sVeeAvrl----GAdAV~~~v~~G-s~---------~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~-~~~~~ia~a 163 (264)
T PRK08227 99 DMEDAVRL----NACAVAAQVFIG-SE---------YEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMV-RDARYFSLA 163 (264)
T ss_pred cHHHHHHC----CCCEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcC-chHHHHHHH
Confidence 46777764 777554 4443 32 23567889999999999999984444331 112 256677778
Q ss_pred HHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee--c-CCcchHHHHHHHHHHhCCCEEEe
Q 013498 240 LGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC--Q-NDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 240 ~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~--H-NDlGLA~ANalaAl~aGa~~vd~ 312 (442)
++.+.+.|||.|-..=| | +.+.+. .+..| +||-+=. . ++ --.+.-...|+++||..|..
T Consensus 164 aRiaaELGADiVK~~y~-~----~~f~~v----v~a~~----vPVviaGG~k~~~-~~~L~~v~~ai~aGa~Gv~~ 225 (264)
T PRK08227 164 TRIAAEMGAQIIKTYYV-E----EGFERI----TAGCP----VPIVIAGGKKLPE-RDALEMCYQAIDEGASGVDM 225 (264)
T ss_pred HHHHHHHcCCEEecCCC-H----HHHHHH----HHcCC----CcEEEeCCCCCCH-HHHHHHHHHHHHcCCceeee
Confidence 88999999998876544 1 344444 44443 3444422 1 33 22578888899999988753
No 312
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.83 E-value=7.8 Score=39.51 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCcEEec---c-----CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH
Q 013498 231 SDRKFLYEILGEVIKVGATTLNI---P-----DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG 302 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~l---a-----DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA 302 (442)
.+++.+.++++.+.++|+|.|.| | |..|...+..+.++++.+++.+. +||.+-.=-+......-+.++
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~----iPV~vKl~p~~~~~~~~a~~l 186 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS----IPVAVKLSPYFSNLANMAKRL 186 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC----CcEEEEeCCCchhHHHHHHHH
Confidence 44567789999999999998877 3 33455555668899999998763 567777544443333334456
Q ss_pred HHhCCCEEEec
Q 013498 303 ACAGARQVEVT 313 (442)
Q Consensus 303 l~aGa~~vd~T 313 (442)
.++|++.|..+
T Consensus 187 ~~~G~dgI~~~ 197 (334)
T PRK07565 187 DAAGADGLVLF 197 (334)
T ss_pred HHcCCCeEEEE
Confidence 68999999764
No 313
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=88.76 E-value=15 Score=36.64 Aligned_cols=142 Identities=20% Similarity=0.195 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHhHcC-CCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc-cchhhHHHHHHH
Q 013498 96 ATLTSKEKLDIARQLAKLG-VDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTAWEA 171 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~G-V~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a~e~ 171 (442)
..+++++.+++...+.+.| +..+-+ |-|...++-++.++...+..+ ....+...+- ...+ .++.
T Consensus 46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~~~~~--------~~~~~~TnG~~~~~~----~~~~ 113 (347)
T COG0535 46 GELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKGG--------IRVSLSTNGTLLTEE----VLEK 113 (347)
T ss_pred cccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHhhcCC--------eEEEEeCCCccCCHH----HHHH
Confidence 5578888889999999999 776655 447666666676666554311 1112222210 1112 2333
Q ss_pred HHhCCCCEEEEeecCChHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 172 VKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~-~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
++..|++.|.+.+-..+.-. ....+ .+.+++++.+.++.+++.|+. +.... ..++.+.+.+.++++.+.+.|++.
T Consensus 114 l~~~g~~~v~iSid~~~~e~hd~~rg--~~g~~~~~~~~i~~~~~~g~~-~~~~~-~v~~~n~~~l~~~~~~~~~~g~~~ 189 (347)
T COG0535 114 LKEAGLDYVSISLDGLDPETHDPIRG--VKGVFKRAVEAIKNLKEAGIL-VVINT-TVTKINYDELPEIADLAAELGVDE 189 (347)
T ss_pred HHhcCCcEEEEEecCCChhhhhhhcC--CCcHHHHHHHHHHHHHHcCCe-eeEEE-EEecCcHHHHHHHHHHHHHcCCCE
Confidence 45568998888766544322 22222 235678888999999999984 44443 356777889999999999999875
Q ss_pred Eec
Q 013498 251 LNI 253 (442)
Q Consensus 251 I~l 253 (442)
+.+
T Consensus 190 ~~~ 192 (347)
T COG0535 190 LNV 192 (347)
T ss_pred EEE
Confidence 544
No 314
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=88.75 E-value=13 Score=37.96 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceE--------eeecccch------hh
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVI--------CGLSRCNE------RD 164 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i--------~~~~r~~~------~d 164 (442)
..+.-++=...|.++|.|++-+.-| ..++.+++++|.++..-.+-.+-.+.+++ +.--|.|+ +.
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~~ 111 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPGNIGFKDR 111 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCcccCcHHH
Confidence 3445555577899999999999877 45678889988887522110000000000 11123332 33
Q ss_pred HHHHHHHHHhCCCC-EEEEeecCChHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHH
Q 013498 165 IKTAWEAVKYAKRP-RIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 165 I~~a~e~l~~~g~~-~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~ 242 (442)
+...+++.+..|++ ||.+--..-|-.+..++ +-+++..++-+...++++-++|+..+.+++ --+|+..+++..+.
T Consensus 112 v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~---K~Sdv~~~v~aYr~ 188 (361)
T COG0821 112 VREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSV---KASDVQLMVAAYRL 188 (361)
T ss_pred HHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHH
Confidence 55556666777887 78777777777888888 558999999999999999999997677765 23566666665555
Q ss_pred HH
Q 013498 243 VI 244 (442)
Q Consensus 243 ~~ 244 (442)
+.
T Consensus 189 lA 190 (361)
T COG0821 189 LA 190 (361)
T ss_pred HH
Confidence 54
No 315
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=88.64 E-value=21 Score=36.49 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHcCCCEEEEccCC---CChhHHH-----HHHHHHHHh
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFPA---ASKEDFE-----AVRTIAKEV 140 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p~---~~~~d~e-----~v~~l~~~~ 140 (442)
+.-+++++.+.++|++.|-++-|. .+|++|+ .++++.+.+
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i 233 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAEL 233 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 334556677778999999876442 3566654 335555544
No 316
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=88.63 E-value=31 Score=35.40 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCC--ccceE------eeecccc------hhh
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESG--YVPVI------CGLSRCN------ERD 164 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~--l~~~i------~~~~r~~------~~d 164 (442)
..+.-++=+..|.++|.+.+-+..| ..++.++++.|.+...-.+-.+-. |...+ +.--|.| ++.
T Consensus 32 Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~ 109 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRER 109 (346)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHH
Confidence 4555666678899999999999887 456667777776643211000000 00000 0011222 334
Q ss_pred HHHHHHHHHhCCCC-EEEEeecCChHHHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHH
Q 013498 165 IKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 165 I~~a~e~l~~~g~~-~v~i~~~~Sd~h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~ 242 (442)
++..+++.++.+++ ||.+--..-+-++..+++. +++..++-+.+.++.+.++|+..+.+++- -+|+....+..+.
T Consensus 110 v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~K---sSdv~~~i~ayr~ 186 (346)
T TIGR00612 110 VRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMK---ASDVAETVAAYRL 186 (346)
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHHHHHHH
Confidence 55556666777777 6776555555678888884 89999999999999999999987777762 2444444444444
Q ss_pred HH
Q 013498 243 VI 244 (442)
Q Consensus 243 ~~ 244 (442)
+.
T Consensus 187 la 188 (346)
T TIGR00612 187 LA 188 (346)
T ss_pred HH
Confidence 43
No 317
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=88.62 E-value=11 Score=37.29 Aligned_cols=178 Identities=15% Similarity=0.122 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEe---eec-----ccchhhHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVIC---GLS-----RCNERDIKTA 168 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~---~~~-----r~~~~dI~~a 168 (442)
..+.++-.++++...+.|++.+-+- |.. ++...+.+... ..+...+. .+. +.....++.+
T Consensus 35 ~~~~~d~~~~~~~a~~~~~~av~v~-~~~-------~~~~~~~~~~~----~~l~~~i~~~~~~~~~~~~~~~~~~ve~A 102 (267)
T PRK07226 35 IDGLVDIRDTVNKVAEGGADAVLMH-KGL-------ARHGHRGYGRD----VGLIVHLSASTSLSPDPNDKVLVGTVEEA 102 (267)
T ss_pred CcCcCCHHHHHHHHHhcCCCEEEeC-HhH-------HhhhccccCCC----CcEEEEEcCCCCCCCCCCcceeeecHHHH
Confidence 3477788889999999999999882 322 11111111100 01111111 111 1222345555
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEc-------cCCCCCCCHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFS-------PEDAGRSDRKFLYEILG 241 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~-------~edasr~d~~~l~~~~~ 241 (442)
++ .|.+.|.+.+..... ...+.++.+.+.++.+++.|+. +.+. .++. .+++.+...++
T Consensus 103 ~~----~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~p-l~vi~~~~g~~~e~~--~~~~~i~~a~~ 167 (267)
T PRK07226 103 IK----LGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMP-LLAMMYPRGPGIKNE--YDPEVVAHAAR 167 (267)
T ss_pred HH----cCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCc-EEEEEecCCCccCCC--ccHHHHHHHHH
Confidence 55 488877766544321 2456788889999999999986 3332 2222 46678888889
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEE-EeecC--CcchHHHHHHHHHHhCCCEEEe
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIS-THCQN--DLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~-~H~HN--DlGLA~ANalaAl~aGa~~vd~ 312 (442)
.+.+.|||.|-..=+ | .+ ++++.+.+..+ +||- .=+-+ |+--++++.-.++++||+.+..
T Consensus 168 ~a~e~GAD~vKt~~~-~--~~----~~l~~~~~~~~----ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 168 VAAELGADIVKTNYT-G--DP----ESFREVVEGCP----VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred HHHHHCCCEEeeCCC-C--CH----HHHHHHHHhCC----CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 999999999966521 2 22 34444444322 2221 11233 5667888999999999995543
No 318
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=88.61 E-value=3.8 Score=40.99 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccc
Q 013498 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGI 317 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~Gl 317 (442)
.-++.+.++|+|.| |-.-.++| ..+++..+|+.+ + +++-.=|-| +..++.++..||+.|-+|..|
T Consensus 80 ~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~---vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~- 144 (287)
T TIGR00343 80 VEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-K---VPFVCGARD-----LGEALRRINEGAAMIRTKGEA- 144 (287)
T ss_pred HHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-C---CCEEccCCC-----HHHHHHHHHCCCCEEeccccC-
Confidence 44677889999999 88889999 688888899887 2 567666665 778899999999999999875
Q ss_pred ccccCc
Q 013498 318 GERAGN 323 (442)
Q Consensus 318 GeraGN 323 (442)
.+||
T Consensus 145 --gTg~ 148 (287)
T TIGR00343 145 --GTGN 148 (287)
T ss_pred --CCcc
Confidence 4566
No 319
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=88.60 E-value=3.6 Score=40.10 Aligned_cols=202 Identities=21% Similarity=0.247 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 94 PGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 94 ~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
.+..|+-.+|+.+++.+ |+|.||.. ..+.| +. +++. .|++...-.+..+ +.
T Consensus 14 lp~~~sW~erl~~AK~~---GFDFvEmS---vDEsD-eR---LaRL----------------DWs~~er~~l~~a---i~ 64 (287)
T COG3623 14 LPNGFSWLERLALAKEL---GFDFVEMS---VDESD-ER---LARL----------------DWSKEERLALVNA---IQ 64 (287)
T ss_pred ccCCCCHHHHHHHHHHc---CCCeEEEe---ccchH-HH---HHhc----------------CCCHHHHHHHHHH---HH
Confidence 45679999999999865 99999993 22222 11 1110 1222212122222 22
Q ss_pred hCCCCEEEEeecCChHHHHHHhCC----CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC--CCHH----H---HHHHH
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRK----TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR--SDRK----F---LYEIL 240 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~----s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr--~d~~----~---l~~~~ 240 (442)
+.|+..-.+ +.| .|.+.-||. ++++.++.+..+|..|+++|+..+....-|... .|.+ | +...+
T Consensus 65 etgv~ipSm--ClS-aHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~ 141 (287)
T COG3623 65 ETGVRIPSM--CLS-AHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAV 141 (287)
T ss_pred HhCCCccch--hhh-hhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHH
Confidence 234322111 222 244444443 468889999999999999999755554434332 2222 2 23333
Q ss_pred HHHHHcCCc-EEeccCcccccCHHHHHHHHHHHHH----hCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe---
Q 013498 241 GEVIKVGAT-TLNIPDTVGITMPTEFGKLIADIKA----NTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV--- 312 (442)
Q Consensus 241 ~~~~~~Gad-~I~laDT~G~~~P~~v~~li~~l~~----~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~--- 312 (442)
+.+.++++. .+-+-||-=+.+-.....+.+.+.. .+|++.++ .-.||| ...=+..|.+.|-+
T Consensus 142 ~lA~~aqV~lAvEiMDtpfm~sIsk~~~~~~~I~sP~f~vYPDiGNl---saw~nd-------v~~El~lG~~~I~aiHl 211 (287)
T COG3623 142 ELAARAQVMLAVEIMDTPFMNSISKWLKYDKYINSPWFTVYPDIGNL---SAWNND-------VQSELQLGIDKIVAIHL 211 (287)
T ss_pred HHHHhhccEEEeeecccHHHHHHHHHHHHHHHhCCCcEEecCCcccH---hhhhhh-------HHHHHHcCcCceEEEEe
Confidence 445555553 5777787544444444444444432 13432211 122333 23445667766532
Q ss_pred --c------cccc----ccccCcccHHHHHHHHHhcc
Q 013498 313 --T------INGI----GERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 313 --T------v~Gl----GeraGNa~lEevv~~L~~~g 337 (442)
| .-|- -=+-|+++-+++...|+..+
T Consensus 212 KDTy~vte~~~GqFrdvpfGeG~Vdf~~~f~~lk~~n 248 (287)
T COG3623 212 KDTYAVTETSPGQFRDVPFGEGCVDFEECFKTLKQLN 248 (287)
T ss_pred cccccccccCCCccccCCcCCcchhHHHHHHHHHHhC
Confidence 1 2221 11459999999999888764
No 320
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=88.56 E-value=25 Score=34.25 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~ 178 (442)
+.++-.+.++.+.+.|+..+-+-......+|.+.++.+.+.++... .-.+=+..+.+.++....++.+...++.
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~~g~~~------~l~vDan~~~~~~~a~~~~~~l~~~~i~ 158 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREAVGDDA------ELRVDANRGWTPKQAIRALRALEDLGLD 158 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHhcCCCC------EEEEeCCCCcCHHHHHHHHHHHHhcCCC
Confidence 3566666777777788887665321122456778888877654321 1122222233445544445555556666
Q ss_pred EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC-CcEEeccCcc
Q 013498 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNIPDTV 257 (442)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G-ad~I~laDT~ 257 (442)
.+.-.++..+ ++ .+.+..+..++. |.. |.+-.++..+.+ +.+.+ +|.|.+ |..
T Consensus 159 ~iEeP~~~~d--------------~~---~~~~l~~~~~ip-ia~---dE~~~~~~~~~~----~i~~~~~d~v~~-k~~ 212 (265)
T cd03315 159 YVEQPLPADD--------------LE---GRAALARATDTP-IMA---DESAFTPHDAFR----ELALGAADAVNI-KTA 212 (265)
T ss_pred EEECCCCccc--------------HH---HHHHHHhhCCCC-EEE---CCCCCCHHHHHH----HHHhCCCCEEEE-ecc
Confidence 6653222211 11 112222334443 443 334455554433 33344 565544 555
Q ss_pred cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 258 GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 258 G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
=+.-..+..++....++. ++++.+|++...|++++.++
T Consensus 213 ~~GGi~~~~~~~~~A~~~-----gi~~~~~~~~~s~i~~~a~~ 250 (265)
T cd03315 213 KTGGLTKAQRVLAVAEAL-----GLPVMVGSMIESGLGTLANA 250 (265)
T ss_pred cccCHHHHHHHHHHHHHc-----CCcEEecCccchHHHHHHHH
Confidence 444455666666665554 36799999888888776554
No 321
>PRK08508 biotin synthase; Provisional
Probab=88.51 E-value=1.9 Score=42.96 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=62.9
Q ss_pred hC-CCHHHHHHHHHHHHHHHHHcCCCeEEEc-c-CCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 195 LR-KTKQQVVEIARSMVKFARSLGCDDVEFS-P-EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 195 l~-~s~~e~l~~~~~~v~~ar~~G~~~V~f~-~-edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
+. ++++++++. ++++++.|...+++. . ......+.+++.++++.+.+.+.+ +.++-+.|.+++++..+|-++
T Consensus 37 y~~~s~eeI~~~----a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 37 YKRKDIEQIVQE----AKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred ccCCCHHHHHHH----HHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 44 576766654 455566777555442 1 111233667888888888876543 233446788887776665443
Q ss_pred HHHhCC-CCcceeEEEeec----CCcchHHHHHHHHHHhCCCEEEecccccccc
Q 013498 272 IKANTP-GIENVVISTHCQ----NDLGLSTANTIAGACAGARQVEVTINGIGER 320 (442)
Q Consensus 272 l~~~~p-~~~~v~i~~H~H----NDlGLA~ANalaAl~aGa~~vd~Tv~GlGer 320 (442)
=...++ +++..+ .++-+ .++---+.....|-++|...-.+-+.|+||.
T Consensus 112 Gld~~~~~lEt~~-~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt 164 (279)
T PRK08508 112 GIFSYNHNLETSK-EFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGES 164 (279)
T ss_pred CCCEEcccccchH-HHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCC
Confidence 111111 111000 01111 1122233344457778877777778888873
No 322
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=88.49 E-value=8.7 Score=39.12 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec---c-----CcccccCHHHHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI---P-----DTVGITMPTEFGKLI 269 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l---a-----DT~G~~~P~~v~~li 269 (442)
..+..++.+.+.. +..+.. |.++. .-.+++.+.++++.+.++|+|.|-| | +-.|...++.+.+++
T Consensus 83 g~~~~~~~i~~~~---~~~~~p-vi~si---~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv 155 (325)
T cd04739 83 GPEEYLELIRRAK---RAVSIP-VIASL---NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDIL 155 (325)
T ss_pred CHHHHHHHHHHHH---hccCCe-EEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHH
Confidence 3445555444321 222433 55554 2255677889999999999987643 2 233444567788999
Q ss_pred HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 270 ADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 270 ~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
+.+++.+. +||.+-.=-++.....-+.++.++||+.|..+
T Consensus 156 ~~v~~~~~----iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 156 RAVKSAVT----IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred HHHHhccC----CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 99998763 55666655455545555667788999998653
No 323
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=88.44 E-value=13 Score=35.22 Aligned_cols=173 Identities=17% Similarity=0.120 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccch-hhHHHHHHHHHhCCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWEAVKYAKR 177 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~e~l~~~g~ 177 (442)
+.++.+++++.+.+. ++.|++|.+-....-.+.++.|.+... +.+..+-+... +-+....+.....|+
T Consensus 9 ~~~~a~~~~~~~~~~-v~~iKig~~l~~~~G~~~v~~l~~~~~----------~v~lD~K~~Dig~t~~~~~~~~~~~ga 77 (213)
T TIGR01740 9 TKDEALDLADSLGPE-IEVIKVGIDLLLDGGDKIIDELAKLNK----------LIFLDLKFADIPNTVKLQYESKIKQGA 77 (213)
T ss_pred CHHHHHHHHHhcCCc-CcEEEECHHHHHhcCHHHHHHHHHcCC----------CEEEEEeecchHHHHHHHHHHHHhcCC
Confidence 455556655554332 889999976432222366777766311 22333322221 122334444456789
Q ss_pred CEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE----ccCCC--CCCCH-HHHHHHHHHHHHcCCcE
Q 013498 178 PRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF----SPEDA--GRSDR-KFLYEILGEVIKVGATT 250 (442)
Q Consensus 178 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f----~~eda--sr~d~-~~l~~~~~~~~~~Gad~ 250 (442)
+.+.+...... +.+..+++.+++.|.. +.. +-.+. ...+. +.+.++++.+.+.|.+.
T Consensus 78 d~vTvh~~~g~---------------~~l~~~~~~~~~~~~~-v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g 141 (213)
T TIGR01740 78 DMVNVHGVAGS---------------ESVEAAKEAASEGGRG-LLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDG 141 (213)
T ss_pred CEEEEcCCCCH---------------HHHHHHHHHhhcCCCe-EEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeE
Confidence 98776543331 3455677777776642 221 11111 11222 56677777777777765
Q ss_pred EeccCcccccCHHHHHHHHHHHH---HhCCCCcceeEEEeec-CCcchHHHHHHHHHHhCCCEE
Q 013498 251 LNIPDTVGITMPTEFGKLIADIK---ANTPGIENVVISTHCQ-NDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~---~~~p~~~~v~i~~H~H-NDlGLA~ANalaAl~aGa~~v 310 (442)
+. +.|+++..+=+... --+|+ |..-.= .+-.--++|.-.+.++||+.+
T Consensus 142 ~v-------~~~~~~~~ir~~~~~~~~vtPG-----I~~~g~~~~dq~~~~~~~~~~~~Gad~i 193 (213)
T TIGR01740 142 PV-------CSAEEAKEIRKFTGDFLILTPG-----IRLQSKGADDQQRVVTLEDAKEAGADVI 193 (213)
T ss_pred EE-------eCHHHHHHHHHhcCCceEEeCC-----cCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence 42 45665544321111 11343 222221 222344567788899999986
No 324
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=88.40 E-value=16 Score=37.56 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHhCCCCEEEEeec--------CChHH--HHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCCCC--CCCH
Q 013498 170 EAVKYAKRPRIHTFIA--------TSGIH--MEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDAG--RSDR 233 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~--------~Sd~h--~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~edas--r~d~ 233 (442)
+..+.+|.|.|.+..+ .|+.. ....+|=+.++-.+.+.+.++.+|+. |.+ .+.++..+.. -.++
T Consensus 148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~ 227 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSP 227 (343)
T ss_pred HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCH
Confidence 3345689999988763 24433 33457778888888888888888886 533 2456664321 2467
Q ss_pred HHHHHHHHHHHHcC-CcEEecc
Q 013498 234 KFLYEILGEVIKVG-ATTLNIP 254 (442)
Q Consensus 234 ~~l~~~~~~~~~~G-ad~I~la 254 (442)
+...++++.+.++| +|.|.+.
T Consensus 228 ~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred HHHHHHHHHHHhcCCCCEEEeC
Confidence 88889999999998 8999883
No 325
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.36 E-value=11 Score=37.14 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHcCCcEEec---c-Cccc----ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcc--hHHHHHH
Q 013498 231 SDRKFLYEILGEVIKVGATTLNI---P-DTVG----ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLG--LSTANTI 300 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~l---a-DT~G----~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlG--LA~ANal 300 (442)
.+++.+.+.++.+.++|+|.|-| | .+.+ .-.|..+.++++.+++.+. ++|.+-.=-+.. -...-+-
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~----~pv~vKl~~~~~~~~~~~~a~ 183 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVD----IPLLVKLSPYFDLEDIVELAK 183 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccC----CCEEEEeCCCCCHHHHHHHHH
Confidence 36788889999999999997765 2 2221 2368899999999999862 455555433333 2344455
Q ss_pred HHHHhCCCEEEec
Q 013498 301 AGACAGARQVEVT 313 (442)
Q Consensus 301 aAl~aGa~~vd~T 313 (442)
.+.++||+.|.++
T Consensus 184 ~l~~~Gad~i~~~ 196 (289)
T cd02810 184 AAERAGADGLTAI 196 (289)
T ss_pred HHHHcCCCEEEEE
Confidence 6778999999764
No 326
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=88.30 E-value=11 Score=36.99 Aligned_cols=192 Identities=12% Similarity=0.079 Sum_probs=109.2
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee---
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG--- 156 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~--- 156 (442)
+.=+|-|+=.|. ..+.++..++++...+.|++.+-+ .|...+ ..... .... ..++..+.+
T Consensus 20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~-~p~~~~----~~~~~---~~~~----~~~~~~~~~~~~ 82 (258)
T TIGR01949 20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLL-HKGIVR----RGHRG---YGKD----VGLIIHLSASTS 82 (258)
T ss_pred EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEe-Ccchhh----hcccc---cCCC----CcEEEEEcCCCC
Confidence 445677765442 346778888999999999999988 343322 11111 1000 011111100
Q ss_pred ecc-----cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-C---
Q 013498 157 LSR-----CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-D--- 227 (442)
Q Consensus 157 ~~r-----~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-d--- 227 (442)
+.+ .....++.+++ .|++.|.+.....+ .+..+.++.+.++.+.+++.|.. +.+..+ +
T Consensus 83 ~g~~~~~~~~~~~v~~al~----~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~-liv~~~~~Gvh 149 (258)
T TIGR01949 83 LSPDPNDKRIVTTVEDAIR----MGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVP-LLAMMYPRGPH 149 (258)
T ss_pred CCCCCCcceeeeeHHHHHH----CCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCC-EEEEEeccCcc
Confidence 111 11123455544 48888777654321 12345678888999999999986 333111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEE-eecC--CcchHHHHHHHHHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST-HCQN--DLGLSTANTIAGAC 304 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~-H~HN--DlGLA~ANalaAl~ 304 (442)
....+.+.+.+.++.+.++|||.|.+. .. ..++. ++.+.+..+ +|+-. =.-+ ++..++.|.-.+++
T Consensus 150 ~~~~~~~~~~~~~~~a~~~GADyikt~-~~--~~~~~----l~~~~~~~~----iPVva~GGi~~~~~~~~~~~i~~~~~ 218 (258)
T TIGR01949 150 IDDRDPELVAHAARLGAELGADIVKTP-YT--GDIDS----FRDVVKGCP----APVVVAGGPKTNSDREFLQMIKDAME 218 (258)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEecc-CC--CCHHH----HHHHHHhCC----CcEEEecCCCCCCHHHHHHHHHHHHH
Confidence 122456677777788889999999975 21 22333 444444332 23322 2233 67788999999999
Q ss_pred hCCCEEEe
Q 013498 305 AGARQVEV 312 (442)
Q Consensus 305 aGa~~vd~ 312 (442)
+||+.+-.
T Consensus 219 aGa~Gia~ 226 (258)
T TIGR01949 219 AGAAGVAV 226 (258)
T ss_pred cCCcEEeh
Confidence 99996643
No 327
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=88.25 E-value=8.3 Score=40.09 Aligned_cols=96 Identities=13% Similarity=0.153 Sum_probs=70.6
Q ss_pred EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHH
Q 013498 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 299 (442)
Q Consensus 221 V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-ANa 299 (442)
..|++-. +-.+++.-.+-++.+.+.+.+.+.|.--...-..+++.++|..++..+|. +.| .|. +|.+. .+.
T Consensus 183 ~lfgiVQ-Gg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~--~kP--ryl---~Gvg~P~~i 254 (366)
T PRK00112 183 ALFGIVQ-GGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPE--DKP--RYL---MGVGTPEDL 254 (366)
T ss_pred eEEEEee-CCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCC--cCC--eEe---cCCCCHHHH
Confidence 3555543 34455666777888888999999988743335788899999999999985 344 333 55554 588
Q ss_pred HHHHHhCCCEEEecccccccccCcc
Q 013498 300 IAGACAGARQVEVTINGIGERAGNA 324 (442)
Q Consensus 300 laAl~aGa~~vd~Tv~GlGeraGNa 324 (442)
+.++..|+|.+|++.-=.=.|.|.+
T Consensus 255 ~~~v~~GvD~FD~~~p~r~Ar~G~a 279 (366)
T PRK00112 255 VEGVARGVDMFDCVMPTRNARNGTL 279 (366)
T ss_pred HHHHHcCCCEEeeCCccccccCCce
Confidence 8999999999999987666666765
No 328
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=88.24 E-value=7.4 Score=37.97 Aligned_cols=176 Identities=22% Similarity=0.265 Sum_probs=104.0
Q ss_pred HHHHhHcCCCEEEEc---------cCCCC---h-hHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHHH
Q 013498 107 ARQLAKLGVDIIEAG---------FPAAS---K-EDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (442)
Q Consensus 107 a~~L~~~GV~~IEvG---------~p~~~---~-~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (442)
++.+.++|++.+=++ +|-.. - +-.+.++.|++... .|.+. ||+. ....+.+.+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~---------iPv~vD~d~GyG~-~~~~v~~tv 91 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVS---------IPVIVDADTGYGN-DPENVARTV 91 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSS---------SEEEEE-TTTSSS-SHHHHHHHH
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhc---------CcEEEEcccccCc-hhHHHHHHH
Confidence 566778899988774 34211 1 22456666666531 24333 3332 266777888
Q ss_pred HHHHhCCCCEEEEeec-CChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC---CCCHHHHHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIA-TSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---RSDRKFLYEILGEVIK 245 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~-~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas---r~d~~~l~~~~~~~~~ 245 (442)
+.+..+|+..|+|-.. .+ | ..+--.+.++..++++.+++..++.++ .|.--. |+. ....+...+-++...+
T Consensus 92 ~~~~~aG~agi~IEDq~~~--~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~-~I~ART-Da~~~~~~~~deaI~R~~aY~e 166 (238)
T PF13714_consen 92 RELERAGAAGINIEDQRCG--H-GGKQLVSPEEMVAKIRAAVDARRDPDF-VIIART-DAFLRAEEGLDEAIERAKAYAE 166 (238)
T ss_dssp HHHHHCT-SEEEEESBSTT--T-STT-B--HHHHHHHHHHHHHHHSSTTS-EEEEEE-CHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEeeccccC--C-CCCceeCHHHHHHHHHHHHHhccCCeE-EEEEec-cccccCCCCHHHHHHHHHHHHH
Confidence 8788899999999876 22 2 112223889999999998888888875 232211 321 1234566667777889
Q ss_pred cCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 246 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 246 ~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+|||.|.+. |....+++.++.+.+. .|+-+..+. +. -+.-.--+.|++.|-.
T Consensus 167 AGAD~ifi~---~~~~~~~i~~~~~~~~--------~Pl~v~~~~--~~--~~~~eL~~lGv~~v~~ 218 (238)
T PF13714_consen 167 AGADMIFIP---GLQSEEEIERIVKAVD--------GPLNVNPGP--GT--LSAEELAELGVKRVSY 218 (238)
T ss_dssp TT-SEEEET---TSSSHHHHHHHHHHHS--------SEEEEETTS--SS--S-HHHHHHTTESEEEE
T ss_pred cCCCEEEeC---CCCCHHHHHHHHHhcC--------CCEEEEcCC--CC--CCHHHHHHCCCcEEEE
Confidence 999999864 5577778777777662 346665542 22 3344455668777743
No 329
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=88.23 E-value=2 Score=42.12 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=81.1
Q ss_pred HHHHhHcC--CCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeec--c-cchhhHHHHHHHHHhCCCCEEE
Q 013498 107 ARQLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLS--R-CNERDIKTAWEAVKYAKRPRIH 181 (442)
Q Consensus 107 a~~L~~~G--V~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~--r-~~~~dI~~a~e~l~~~g~~~v~ 181 (442)
-+.|.-+| ||.+=+||..+.-.+.+.+++..+..... +..+..-|+. - .....++.-++..+..|.+.|.
T Consensus 28 ~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~-----gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 28 EDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSH-----GVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCT-----T-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHc-----CCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 34445555 89999998644322233454444332110 1111111110 0 0134566667777788999999
Q ss_pred EeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCC---CCCCCHHHHHHHHHHHHHcCCcEE------
Q 013498 182 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPED---AGRSDRKFLYEILGEVIKVGATTL------ 251 (442)
Q Consensus 182 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~ed---asr~d~~~l~~~~~~~~~~Gad~I------ 251 (442)
++..+-++ +. +.-.++|+.+++.|+.. .+++--+ ....|++.+.+.++.-.++||+.|
T Consensus 103 iSdGti~l--------~~----~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarE 170 (244)
T PF02679_consen 103 ISDGTIDL--------PE----EERLRLIRKAKEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARE 170 (244)
T ss_dssp E--SSS-----------H----HHHHHHHHHHCCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TT
T ss_pred ecCCceeC--------CH----HHHHHHHHHHHHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeec
Confidence 98766543 22 33346899999999851 2455422 334457789999999999999876
Q ss_pred ----eccCcccccCHHHHHHHHHHH
Q 013498 252 ----NIPDTVGITMPTEFGKLIADI 272 (442)
Q Consensus 252 ----~laDT~G~~~P~~v~~li~~l 272 (442)
.++|..|....+.+.+++..+
T Consensus 171 sG~~Gi~~~~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 171 SGKGGIYDNDGEVRTDLVEKIIERL 195 (244)
T ss_dssp T--STTB-TTS-B-HHHHHHHHTTS
T ss_pred cCCCCccCCCCCccHHHHHHHHHhC
Confidence 467888888888887777643
No 330
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=88.23 E-value=17 Score=35.29 Aligned_cols=190 Identities=17% Similarity=0.174 Sum_probs=101.7
Q ss_pred HHHHHHHHHhHcCCCEEEEccC---CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCC
Q 013498 102 EKLDIARQLAKLGVDIIEAGFP---AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRP 178 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p---~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~ 178 (442)
+=+++++.+.+.|++.|-+--- ...+...+.++.+++... .|...+=+--+.+|++..++. |++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~---------~pv~vgGGirs~edv~~~l~~----Ga~ 99 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLD---------VKVELSGGIRDDESLEAALAT----GCA 99 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcC---------CCEEEcCCCCCHHHHHHHHHC----CCC
Confidence 5677899999999987655211 112234688888888642 133333333377888888774 888
Q ss_pred EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC------CCCCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 179 RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAGRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 179 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e------dasr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
++.+ .+.-+ .+ .+.+.++++...+. + .+.+..- .....+...+.++++.+.+.|++.|.
T Consensus 100 kvvi--Gs~~l-------~~----p~l~~~i~~~~~~~-i-~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ii 164 (241)
T PRK14024 100 RVNI--GTAAL-------EN----PEWCARVIAEHGDR-V-AVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYV 164 (241)
T ss_pred EEEE--CchHh-------CC----HHHHHHHHHHhhhh-E-EEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEE
Confidence 7654 22110 11 23334444433332 1 1111110 00011224567888899999999888
Q ss_pred ccCcc--cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH----HhCCCEEEecccccccccCcccH
Q 013498 253 IPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA----CAGARQVEVTINGIGERAGNASL 326 (442)
Q Consensus 253 laDT~--G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl----~aGa~~vd~Tv~GlGeraGNa~l 326 (442)
+-|-. |..... -.++++.+++..+ +||-.-. |.....-+..+ ..||+ +-+.|-+=-.|..++
T Consensus 165 v~~~~~~g~~~G~-d~~~i~~i~~~~~----ipviasG----Gi~s~~D~~~l~~~~~~Gvd---gV~igra~~~g~~~~ 232 (241)
T PRK14024 165 VTDVTKDGTLTGP-NLELLREVCARTD----APVVASG----GVSSLDDLRALAELVPLGVE---GAIVGKALYAGAFTL 232 (241)
T ss_pred EEeecCCCCccCC-CHHHHHHHHhhCC----CCEEEeC----CCCCHHHHHHHhhhccCCcc---EEEEeHHHHcCCCCH
Confidence 87654 555554 3667788887653 4555422 22222222222 12444 335554444566666
Q ss_pred HHHHH
Q 013498 327 EEVVM 331 (442)
Q Consensus 327 Eevv~ 331 (442)
+++..
T Consensus 233 ~~~~~ 237 (241)
T PRK14024 233 PEALA 237 (241)
T ss_pred HHHHH
Confidence 66543
No 331
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.22 E-value=13 Score=38.49 Aligned_cols=111 Identities=17% Similarity=0.249 Sum_probs=71.4
Q ss_pred ceEeeeccc-chhhHHHHHHHHHhCCCCEEEEeec-----CChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEc
Q 013498 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-----TSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFS 224 (442)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~e~l~~~g~~~v~i~~~-----~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~ 224 (442)
|.+.--+.. ..+++..|++.+...|...|.+.-. .|... ...++ + .++...|+. ++. |.|.
T Consensus 210 PVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~-~~~~d------l----~ai~~lk~~~~lP-Vi~D 277 (352)
T PRK13396 210 PVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT-RNTLD------L----SVIPVLRSLTHLP-IMID 277 (352)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC-CCCcC------H----HHHHHHHHhhCCC-EEEC
Confidence 444433333 7889999999888778876665433 21111 00011 1 234444555 675 7776
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCcEE----------eccCcccccCHHHHHHHHHHHHHh
Q 013498 225 PEDAGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 225 ~edasr~d~~~l~~~~~~~~~~Gad~I----------~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
+..+. -..+++..++.+++.+|||.+ .++|-.=.++|.++.+|++.+++.
T Consensus 278 psH~~-G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i 337 (352)
T PRK13396 278 PSHGT-GKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVI 337 (352)
T ss_pred CcccC-CcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHH
Confidence 53221 223567789999999999933 367888999999999999998864
No 332
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.19 E-value=28 Score=34.34 Aligned_cols=151 Identities=21% Similarity=0.144 Sum_probs=86.8
Q ss_pred HHHHHHHhCCCCEEEEeecCChHH-----HH------HHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEccCCCCCCCH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIH-----ME------HKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDR 233 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h-----~~------~~l~~s~~e~l~~~~~~v~~ar~~--G~~~V~f~~edasr~d~ 233 (442)
..++.+...|++.|.+=+|-||.- ++ -+-|.+.++.++ .++..|+. ..+.+-+ +..++
T Consensus 30 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~----~~~~~r~~~~~~p~vlm-----~Y~N~ 100 (258)
T PRK13111 30 EIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE----LVREIREKDPTIPIVLM-----TYYNP 100 (258)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCEEEE-----ecccH
Confidence 344455567888888888887721 11 122556555555 44445533 2222211 12221
Q ss_pred ---HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 234 ---KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 234 ---~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
-=+.++++.+.++|+|.+.++| +.+++..+++..++++- +.+.+=+=.+.--.-...+++...|.=++
T Consensus 101 i~~~G~e~f~~~~~~aGvdGviipD----Lp~ee~~~~~~~~~~~g-----l~~I~lvap~t~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 101 IFQYGVERFAADAAEAGVDGLIIPD----LPPEEAEELRAAAKKHG-----LDLIFLVAPTTTDERLKKIASHASGFVYY 171 (258)
T ss_pred HhhcCHHHHHHHHHHcCCcEEEECC----CCHHHHHHHHHHHHHcC-----CcEEEEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 1244678899999999999998 56889999999988752 22334344444444556666666664333
Q ss_pred Eecccccc-cccCc-ccHHHHHHHHHhc
Q 013498 311 EVTINGIG-ERAGN-ASLEEVVMAFKCR 336 (442)
Q Consensus 311 d~Tv~GlG-eraGN-a~lEevv~~L~~~ 336 (442)
.++.|.. .+++. ..+++.+..++..
T Consensus 172 -vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 172 -VSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred -EeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 4666643 33332 3456666666653
No 333
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=88.07 E-value=14 Score=37.98 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=60.6
Q ss_pred chhhHH-HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHH
Q 013498 161 NERDIK-TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (442)
Q Consensus 161 ~~~dI~-~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~ 238 (442)
+++.+. ..++.++.+|+.+|.+-+=..+-.+...+|+. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+
T Consensus 97 nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~ 174 (353)
T PRK05904 97 NPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDE 174 (353)
T ss_pred ccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHH
Confidence 444442 34566677899999886655555676777763 2345677889999999975344433221 2345677888
Q ss_pred HHHHHHHcCCcEEec
Q 013498 239 ILGEVIKVGATTLNI 253 (442)
Q Consensus 239 ~~~~~~~~Gad~I~l 253 (442)
.++.+.+.+++.|.+
T Consensus 175 tl~~~~~l~p~~is~ 189 (353)
T PRK05904 175 VFNFILKHKINHISF 189 (353)
T ss_pred HHHHHHhcCCCEEEE
Confidence 899999999886644
No 334
>PRK07094 biotin synthase; Provisional
Probab=88.05 E-value=11 Score=37.87 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~ 246 (442)
++.+++++. ++.+.+.|...+.|..-+....+.+++.++++.+.+.
T Consensus 70 ls~eei~~~----~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~ 115 (323)
T PRK07094 70 LSPEEILEC----AKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE 115 (323)
T ss_pred CCHHHHHHH----HHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc
Confidence 455555443 3444556665555543212233556777777777663
No 335
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=88.01 E-value=1.8 Score=43.25 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTING 316 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~G 316 (442)
..-++.+.++|+|.| |-.....| ..+++..+|+.+ + +++-.-|-+ +..++.|++.|++.|-+|+.|
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~---~l~MAD~st-----leEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-K---VPFVCGARN-----LGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-C---CcEEccCCC-----HHHHHHHHHCCCCEEEecCCC
Confidence 455778889999999 87777888 688999999887 3 455544444 788999999999999999985
Q ss_pred cccccCc
Q 013498 317 IGERAGN 323 (442)
Q Consensus 317 lGeraGN 323 (442)
.+||
T Consensus 143 ---yT~~ 146 (283)
T cd04727 143 ---GTGN 146 (283)
T ss_pred ---CCCc
Confidence 4555
No 336
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=87.98 E-value=9.6 Score=36.87 Aligned_cols=138 Identities=22% Similarity=0.283 Sum_probs=81.8
Q ss_pred EEeCCCCcCCCCCCCCCCHHHHHH----HHHHHhHcCCCEEEE---c-cCCCChhHHHHHHHHHHHhcccccccCCccce
Q 013498 82 VFDTTLRDGEQSPGATLTSKEKLD----IARQLAKLGVDIIEA---G-FPAASKEDFEAVRTIAKEVGNAVDAESGYVPV 153 (442)
Q Consensus 82 I~DtTLRDG~Q~~g~~fs~e~kl~----ia~~L~~~GV~~IEv---G-~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~ 153 (442)
.+=|=||||.|.. ++.+-... ....|++.|++.|=+ | ||.-.. + .+.
T Consensus 54 vLvTrL~DG~~V~---ls~~~v~~~lq~~i~~le~~G~d~illlCTG~F~~l~~-~---------------------~~l 108 (221)
T PF07302_consen 54 VLVTRLRDGTQVV---LSKKKVEPRLQACIAQLEAQGYDVILLLCTGEFPGLTA-R---------------------NPL 108 (221)
T ss_pred eeEEEeCCCCEEE---EEHHHHHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCC-C---------------------cce
Confidence 4445799998754 55544433 344688889998865 3 331110 0 010
Q ss_pred EeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCH
Q 013498 154 ICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDR 233 (442)
Q Consensus 154 i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~ 233 (442)
|. ...-|...+.++. +-.+|.+++|..+. +....+.-+..+.. +.+.....+..+.
T Consensus 109 le-----P~ril~~lV~al~--~~~~vGVivP~~eQ----------------~~~~~~kW~~l~~~-~~~a~asPy~~~~ 164 (221)
T PF07302_consen 109 LE-----PDRILPPLVAALV--GGHQVGVIVPLPEQ----------------IAQQAEKWQPLGNP-VVVAAASPYEGDE 164 (221)
T ss_pred ee-----hHHhHHHHHHHhc--CCCeEEEEecCHHH----------------HHHHHHHHHhcCCC-eEEEEeCCCCCCH
Confidence 00 1122333444443 33688999887642 22333444556654 6665544444678
Q ss_pred HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
+.+.+.++.+.+.|+|.|.+ |-.|+... .++++..
T Consensus 165 ~~l~~Aa~~L~~~gadlIvL-DCmGYt~~--~r~~~~~ 199 (221)
T PF07302_consen 165 EELAAAARELAEQGADLIVL-DCMGYTQE--MRDIVQR 199 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEE-ECCCCCHH--HHHHHHH
Confidence 89999999999999999988 99998753 4444443
No 337
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=87.92 E-value=23 Score=36.24 Aligned_cols=164 Identities=20% Similarity=0.252 Sum_probs=100.1
Q ss_pred ceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcC-CCEEEEccCCCChh--HHHHHHHHHHHhcccccccCCccceEe
Q 013498 79 YVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLG-VDIIEAGFPAASKE--DFEAVRTIAKEVGNAVDAESGYVPVIC 155 (442)
Q Consensus 79 ~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~G-V~~IEvG~p~~~~~--d~e~v~~l~~~~~~~~~~~~~l~~~i~ 155 (442)
.|+|+-. |.-.....++.+....|++.|.+.+ |..+-+-+ -|+ +-|.++++.+.+... .+-.=.
T Consensus 103 ~vkIFTS----GSFLD~~EVP~e~R~~Il~~is~~~~v~~vvvES---RpE~I~eE~l~e~~~il~gk------~~EvaI 169 (358)
T COG1244 103 VVKIFTS----GSFLDPEEVPREARRYILERISENDNVKEVVVES---RPEFIREERLEEITEILEGK------IVEVAI 169 (358)
T ss_pred eEEEEcc----cccCChhhCCHHHHHHHHHHHhhccceeEEEeec---CchhcCHHHHHHHHHhhCCc------eEEEEE
Confidence 4777643 5555556788899999999999886 77766643 222 235666666653221 011113
Q ss_pred eecccc-------------hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE
Q 013498 156 GLSRCN-------------ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE 222 (442)
Q Consensus 156 ~~~r~~-------------~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~ 222 (442)
|+.-++ -+|+.+|.+.++..|+. +..|+-.-+++ .|..++++.+...++ +.+-|...|+
T Consensus 170 GLETanD~ire~sINKGftF~df~~A~~~ir~~g~~-vktYlllKP~F------lSE~eAI~D~i~Si~-~~~~~~d~iS 241 (358)
T COG1244 170 GLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAK-VKTYLLLKPPF------LSEKEAIEDVISSIV-AAKPGTDTIS 241 (358)
T ss_pred ecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCCc-eeEEEEecccc------cChHHHHHHHHHHHH-HhccCCCeEE
Confidence 444333 24566677777777764 34444333333 366788888888888 5556677788
Q ss_pred EccCCCCC------------CCHHHH---HHHHHHHHHcCCcEEeccCcccccCHH
Q 013498 223 FSPEDAGR------------SDRKFL---YEILGEVIKVGATTLNIPDTVGITMPT 263 (442)
Q Consensus 223 f~~edasr------------~d~~~l---~~~~~~~~~~Gad~I~laDT~G~~~P~ 263 (442)
+++...-+ +.|-+| +++++.+.+.++....++|++|...+.
T Consensus 242 inptnVqKgTlvE~lw~~g~YRPPwLWSivEVL~~~~~~~~~~~i~sdp~G~gs~R 297 (358)
T COG1244 242 INPTNVQKGTLVEKLWRRGLYRPPWLWSIVEVLREAKKTGPMLRILSDPVGAGSDR 297 (358)
T ss_pred ecccccchhhHHHHHHHcCCCCCchHHHHHHHHHHHHhcCCCCceeecCCCCCCCC
Confidence 87743322 233344 445555666677778889999987764
No 338
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=87.69 E-value=5.1 Score=37.61 Aligned_cols=164 Identities=21% Similarity=0.221 Sum_probs=87.2
Q ss_pred eEeeecccchhhHHHHHHHHHhCCCCEEEEee-cCChHHHHHHhCCCHHHH-HHHHHHHHHHHHHcCCCeEEEccCCCCC
Q 013498 153 VICGLSRCNERDIKTAWEAVKYAKRPRIHTFI-ATSGIHMEHKLRKTKQQV-VEIARSMVKFARSLGCDDVEFSPEDAGR 230 (442)
Q Consensus 153 ~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~-~~Sd~h~~~~l~~s~~e~-l~~~~~~v~~ar~~G~~~V~f~~edasr 230 (442)
.|||.. +.+|++.+.+. |++.|.+-. +.|+- ++ .+.++++.+.++.. ...|.+-..+
T Consensus 2 KiCGi~--~~ed~~~a~~~----Gvd~ig~i~~~~s~R-----------~v~~~~a~~l~~~~~~~-~~~V~v~vn~--- 60 (203)
T cd00405 2 KICGIT--TLEDALAAAEA----GADAIGFIFAPKSPR-----------YVSPEQAREIVAALPPF-VKRVGVFVNE--- 60 (203)
T ss_pred EECCCC--CHHHHHHHHHc----CCCEEEEecCCCCCC-----------CCCHHHHHHHHHhCCCC-CcEEEEEeCC---
Confidence 366655 67888887764 888887643 33432 22 45555666655542 1234443211
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCccee--EEEeecCCcchHHHHHHHHHHhCCC
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVV--ISTHCQNDLGLSTANTIAGACAGAR 308 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~--i~~H~HNDlGLA~ANalaAl~aGa~ 308 (442)
+++ ++.+.+.+.|+|.|.|-..- .|. .++.+++.++. ++. +++++|++.- ...+...|++
T Consensus 61 -~~~---~i~~ia~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~--~~i~~i~~~~~~~~~-----~~~~~~~~aD 122 (203)
T cd00405 61 -DLE---EILEIAEELGLDVVQLHGDE---SPE----YCAQLRARLGL--PVIKAIRVKDEEDLE-----KAAAYAGEVD 122 (203)
T ss_pred -CHH---HHHHHHHhcCCCEEEECCCC---CHH----HHHHHHhhcCC--cEEEEEecCChhhHH-----HhhhccccCC
Confidence 234 44555667899999987432 333 34555655432 244 5555565532 2455667998
Q ss_pred EE--EecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHHH
Q 013498 309 QV--EVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMASK 358 (442)
Q Consensus 309 ~v--d~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls~ 358 (442)
++ |+..-+.++++|..---+++..+. .... .-+--|++.+.+.++.+
T Consensus 123 ~il~dt~~~~~~Gg~g~~~~~~~l~~~~-~~~P--vilaGGI~~~Nv~~~i~ 171 (203)
T cd00405 123 AILLDSKSGGGGGGTGKTFDWSLLRGLA-SRKP--VILAGGLTPDNVAEAIR 171 (203)
T ss_pred EEEEcCCCCCCCCCCcceEChHHhhccc-cCCC--EEEECCCChHHHHHHHH
Confidence 84 665544333344332222222222 1101 12345888888877654
No 339
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=87.68 E-value=17 Score=38.78 Aligned_cols=159 Identities=16% Similarity=0.127 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHhHc--CCCEEEEcc--CCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHH
Q 013498 98 LTSKEKLDIARQLAKL--GVDIIEAGF--PAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVK 173 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~--GV~~IEvG~--p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~ 173 (442)
.+.+..++=++.+.+. |++.|-++- +...+ +.+..+.+.+... ++ .+.+.+|.+. + +.-++.++
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~---~~~~~l~~~l~~~-----~i--~~~~~~~~~~-~-~e~l~~l~ 294 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTDDK---PRAEEIARKLGPL-----GV--TWSCNARANV-D-YETLKVMK 294 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCH---HHHHHHHHHHhhc-----Cc--eEEEEecCCC-C-HHHHHHHH
Confidence 5677776666666554 788877642 22222 2233333332110 11 1222333321 1 22355566
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcEEe
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLN 252 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~I~ 252 (442)
.+|..+|.+-+-+.+..+..++++.. ..+.+.++++.+++.|+. +..+..-+ .--+.+.+.+.++.+.+.+++.+.
T Consensus 295 ~aG~~~v~iGiES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~-v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 295 ENGLRLLLVGYESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIK-VHGTFILGLPGETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred HcCCCEEEEcCCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCe-EEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 78999888755444445556676642 245677889999999985 54332111 123567788888889999988765
Q ss_pred ccCcccccCHHHHHHHHHHHHHh
Q 013498 253 IPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 253 laDT~G~~~P~~v~~li~~l~~~ 275 (442)
+ ..++|..-..+.+.++++
T Consensus 372 ~----~~l~P~PGT~l~~~~~~~ 390 (472)
T TIGR03471 372 V----SLAAPYPGTELYDQAKQN 390 (472)
T ss_pred e----eecccCCCcHHHHHHHHC
Confidence 3 567777766777776654
No 340
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.66 E-value=25 Score=33.04 Aligned_cols=174 Identities=16% Similarity=0.115 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEcc---C--CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGF---P--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA 171 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~---p--~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~ 171 (442)
.+....-.+.++.+.+.|++.|+++. + ..++-..+.++.+.+.... +.-+.+- .+ |.+.-++.
T Consensus 12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~---------~~~v~l~-v~--d~~~~i~~ 79 (220)
T PRK05581 12 SADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKL---------PLDVHLM-VE--NPDRYVPD 79 (220)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCC---------cEEEEee-eC--CHHHHHHH
Confidence 45555667789999999999999953 1 1112134566666653210 1101111 11 22222233
Q ss_pred HHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 172 VKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
...+|.+.|.+....+ +...+.++.+++.|+. +.+.+. ..++.+.+.++. .++|.|
T Consensus 80 ~~~~g~d~v~vh~~~~----------------~~~~~~~~~~~~~~~~-~g~~~~--~~t~~e~~~~~~-----~~~d~i 135 (220)
T PRK05581 80 FAKAGADIITFHVEAS----------------EHIHRLLQLIKSAGIK-AGLVLN--PATPLEPLEDVL-----DLLDLV 135 (220)
T ss_pred HHHcCCCEEEEeeccc----------------hhHHHHHHHHHHcCCE-EEEEEC--CCCCHHHHHHHH-----hhCCEE
Confidence 3356889866554322 2223457888889874 555441 223444443332 235644
Q ss_pred ec----cCcccccCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 252 NI----PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 252 ~l----aDT~G~~~P~~v~~li~~l~~~~p~~~-~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
++ +-+.|...+....+.++.+++..+... +.++.+ +-|+-..|.-.+.++|++.|
T Consensus 136 ~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~v 195 (220)
T PRK05581 136 LLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVF 195 (220)
T ss_pred EEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 43 233444444556666777766543100 011211 35788888888888999876
No 341
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=87.64 E-value=4.7 Score=43.61 Aligned_cols=70 Identities=20% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTIN 315 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~ 315 (442)
.+.++.+.++|+|.|.+ |+.---++ ...+.|+.+++.+|+ ++|.. -...-...+..++++||+.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~i-d~a~G~s~-~~~~~i~~ik~~~~~---~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVV-DSSQGNSI-YQIDMIKKLKSNYPH---VDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEE-ecCCCCch-HHHHHHHHHHhhCCC---ceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 68888999999999988 55432333 346789999999884 66766 2334456888999999999987543
No 342
>PRK06801 hypothetical protein; Provisional
Probab=87.52 E-value=16 Score=36.69 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccCcc-cccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPDTV-GITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laDT~-G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
++++++.|++.|+.--.|++ .+.+.+..+++.+.+.++.. |.+.... .......+..++..+.++.+ +|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~----vp 76 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNV-----LDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD----IP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEee-----CCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC----CC
Confidence 56788889999985346766 46899999999999998764 4444433 33455778888888888763 77
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
+.+|. |-|.-......|+++|++.|-.
T Consensus 77 V~lHl--DH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 77 VVLNL--DHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred EEEEC--CCCCCHHHHHHHHHhCCcEEEE
Confidence 88776 4466678889999999998633
No 343
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.46 E-value=14 Score=37.90 Aligned_cols=131 Identities=11% Similarity=0.043 Sum_probs=81.3
Q ss_pred HHHHhCCCCEEEEeecC--------ChH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC-eEEEccCCCC--CCCHHH
Q 013498 170 EAVKYAKRPRIHTFIAT--------SGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAG--RSDRKF 235 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~--------Sd~--h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~-~V~f~~edas--r~d~~~ 235 (442)
+..+.+|.|.|.+..+- |+. +...++|=|.+.-.+-+.+.++.+|+. ... .|.+++.|.. -.+++.
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHH
Confidence 34566899999887662 442 344556667777777777777777775 222 2456654322 246788
Q ss_pred HHHHHHHHHHcCCcEEeccCccccc-------CHHHHHHHHHHHHHhCCCCcceeEE-EeecCCcchHHHHHHHHHHhC-
Q 013498 236 LYEILGEVIKVGATTLNIPDTVGIT-------MPTEFGKLIADIKANTPGIENVVIS-THCQNDLGLSTANTIAGACAG- 306 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT~G~~-------~P~~v~~li~~l~~~~p~~~~v~i~-~H~HNDlGLA~ANalaAl~aG- 306 (442)
..++++.+.++|+|.|.+. .|.. .|....++.+.+++.+. ++|. .-.-++ ...+.++++.|
T Consensus 229 ~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~----ipVi~~G~i~~----~~~a~~~l~~g~ 298 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHAN----IATGAVGLITS----GAQAEEILQNNR 298 (337)
T ss_pred HHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcC----CcEEEeCCCCC----HHHHHHHHHcCC
Confidence 8999999999999999883 3431 12223456677777763 3433 322233 34566778776
Q ss_pred CCEE
Q 013498 307 ARQV 310 (442)
Q Consensus 307 a~~v 310 (442)
||.|
T Consensus 299 ~D~V 302 (337)
T PRK13523 299 ADLI 302 (337)
T ss_pred CChH
Confidence 6654
No 344
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=87.34 E-value=36 Score=34.97 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=72.0
Q ss_pred ceEeeeccc-chhhHHHHHHHHHhCCCCEEEEeec-CChHHHHHHh-CCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCC
Q 013498 152 PVICGLSRC-NERDIKTAWEAVKYAKRPRIHTFIA-TSGIHMEHKL-RKTKQQVVEIARSMVKFARSL-GCDDVEFSPED 227 (442)
Q Consensus 152 ~~i~~~~r~-~~~dI~~a~e~l~~~g~~~v~i~~~-~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~ed 227 (442)
|.+.--+.. +.+++..|.+.+...|-+.+.+.-. ++. + +-++.. ++ ...+...|+. ++. |.+.+ +
T Consensus 202 PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~t------f~~~~~~~-ld--l~ai~~lk~~~~lP-Vi~d~-s 270 (335)
T PRK08673 202 PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRT------FETATRNT-LD--LSAVPVIKKLTHLP-VIVDP-S 270 (335)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC------CCCcChhh-hh--HHHHHHHHHhcCCC-EEEeC-C
Confidence 444333323 6788888988888778877766532 321 1 111111 11 2344455553 665 65544 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEE----------eccCcccccCHHHHHHHHHHHHHh
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTL----------NIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I----------~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
-+--..+++..++.++..+|||.+ .++|-.=.++|+++.+|++.+++.
T Consensus 271 H~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i 328 (335)
T PRK08673 271 HATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAI 328 (335)
T ss_pred CCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHH
Confidence 233345788889999999999832 358888899999999999999864
No 345
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=87.30 E-value=21 Score=34.87 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=74.5
Q ss_pred HHHHHhHcCCCEEEEcc---------CCCCh----hHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHH
Q 013498 106 IARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTA 168 (442)
Q Consensus 106 ia~~L~~~GV~~IEvG~---------p~~~~----~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a 168 (442)
-++.++++|++.|=+|. |.... +....++.+.+-..+ .|.++ ++.. ..+++.+.
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~--------~pviaD~~~G~g~-~~~~~~~~ 94 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL--------ALIVADLPFGAYG-APTAAFEL 94 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC--------CCEEEeCCCCCCc-CHHHHHHH
Confidence 47788899999999863 42211 123455555543211 23333 3343 33444444
Q ss_pred HHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC--------------CC--CC
Q 013498 169 WEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA--------------GR--SD 232 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda--------------sr--~d 232 (442)
.+.+..+|+..|++-... + ..+.++.+++.++. |.-- .|. .| .+
T Consensus 95 ~~~l~~aGa~gv~iED~~--------------~----~~~~i~ai~~a~i~-ViaR-td~~pq~~~~~gg~~~~~~~~~~ 154 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGE--------------W----HIETLQMLTAAAVP-VIAH-TGLTPQSVNTSGGDEGQYRGDEA 154 (240)
T ss_pred HHHHHHcCCcEEEEcCcH--------------H----HHHHHHHHHHcCCe-EEEE-eCCchhhhhccCCceeeccCHHH
Confidence 454555899999886531 2 23356666777763 3211 122 11 23
Q ss_pred HHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 233 RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
.+.+.+-+++..++|||.|.+. +. .++++.++.+.
T Consensus 155 ~~~ai~Ra~ay~~AGAd~i~~e---~~-~~e~~~~i~~~ 189 (240)
T cd06556 155 GEQLIADALAYAPAGADLIVME---CV-PVELAKQITEA 189 (240)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc---CC-CHHHHHHHHHh
Confidence 4566666788889999999996 33 55555544443
No 346
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=87.24 E-value=26 Score=35.23 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=113.9
Q ss_pred HHHHhHcCCCEEEEc---------cCCCC----hhHHHHHHHHHHHhcccccccCCccceEe----eecccchhhHHHHH
Q 013498 107 ARQLAKLGVDIIEAG---------FPAAS----KEDFEAVRTIAKEVGNAVDAESGYVPVIC----GLSRCNERDIKTAW 169 (442)
Q Consensus 107 a~~L~~~GV~~IEvG---------~p~~~----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~----~~~r~~~~dI~~a~ 169 (442)
++...++|++.|=++ +|-.. .+-.+.++.|++... .|.+. |++. ...+.+.+
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~---------lPv~aD~d~GyG~--~~~v~~tV 96 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVS---------IPLIADIDTGFGN--AVNVHYVV 96 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccC---------CCEEEECCCCCCC--cHHHHHHH
Confidence 566777899988774 23211 112456666665431 23332 3442 23577777
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHH----hC-CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCCC--CCCHHHHHHHHH
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHK----LR-KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAG--RSDRKFLYEILG 241 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~----l~-~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-edas--r~d~~~l~~~~~ 241 (442)
+.+..+|+..|+|-..+++-++-+- -. .+.++..++++.+.+. + .+.+ +.+.. .|+. ....+...+-++
T Consensus 97 ~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d-~~I~ARTDa~~~~~g~deAI~Ra~ 173 (290)
T TIGR02321 97 PQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRD-FVVIARVEALIAGLGQQEAVRRGQ 173 (290)
T ss_pred HHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCC-EEEEEEeccccccCCHHHHHHHHH
Confidence 7777789999999887665432211 11 3677777777666444 2 3433 33322 2332 234567777788
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHHHhC-CCEEEeccccccc
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGACAG-ARQVEVTINGIGE 319 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA-~ANalaAl~aG-a~~vd~Tv~GlGe 319 (442)
...++|||.|.+. .+..+|+++.++++.+... +++-+.. ..+-. .+..++ +.| ... +++....-
T Consensus 174 aY~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~p------~pv~~~~--~~~p~~~~~~l~--~lg~~~~--v~~g~~~~ 239 (290)
T TIGR02321 174 AYEEAGADAILIH--SRQKTPDEILAFVKSWPGK------VPLVLVP--TAYPQLTEADIA--ALSKVGI--VIYGNHAI 239 (290)
T ss_pred HHHHcCCCEEEec--CCCCCHHHHHHHHHhcCCC------CCeEEec--CCCCCCCHHHHH--HhcCCcE--EEEChHHH
Confidence 9999999999983 1346788888887765321 3343322 11111 122333 445 455 44444444
Q ss_pred ccCcccHHHHHHHHHhcc
Q 013498 320 RAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 320 raGNa~lEevv~~L~~~g 337 (442)
|+-..++++.+..+...|
T Consensus 240 ~aa~~a~~~~~~~i~~~g 257 (290)
T TIGR02321 240 RAAVGAVREVFARIRRDG 257 (290)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 666677777777776543
No 347
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=87.22 E-value=25 Score=34.20 Aligned_cols=142 Identities=10% Similarity=-0.040 Sum_probs=78.2
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHH-HHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--ccCCCCCCCHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHME-HKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAGRSDRKFL 236 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~-~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~edasr~d~~~l 236 (442)
.+.+++..+.+.+.. +.+.|.+-..+.-.-+. ...|...-.-.+.+.+.++.+++.+.+ |.+ .+.. +....
T Consensus 77 ~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P-VsvKiR~~~----~~~~~ 150 (231)
T TIGR00736 77 VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP-IFVKIRGNC----IPLDE 150 (231)
T ss_pred CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc-EEEEeCCCC----CcchH
Confidence 366666666555443 67777665444321111 001111111124455666666666664 444 3311 23456
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
.++++.+.++|++.|.+ |..=...|.--.+.|+.+++.+++ +||-- |.-=....-+++.+++||+.|..+=
T Consensus 151 ~~~a~~l~~aGad~i~V-d~~~~g~~~a~~~~I~~i~~~~~~---ipIIg---NGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHV-DAMYPGKPYADMDLLKILSEEFND---KIIIG---NNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred HHHHHHHHHcCCCEEEE-eeCCCCCchhhHHHHHHHHHhcCC---CcEEE---ECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 78999999999999988 421111233457888999988743 33332 1111223566777788888886644
No 348
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=87.11 E-value=14 Score=37.69 Aligned_cols=132 Identities=16% Similarity=0.079 Sum_probs=80.5
Q ss_pred HHHHhCCCCEEEEeecC--------Ch--HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCC--CCCCCH
Q 013498 170 EAVKYAKRPRIHTFIAT--------SG--IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPED--AGRSDR 233 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~--------Sd--~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~ed--asr~d~ 233 (442)
+..+.+|.+.|.+..+- |+ -+...++|-+.++-.+.+.+.++.+|+. |-. .|.+++++ ....++
T Consensus 161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCH
Confidence 33456899999886532 22 2344456778888888888888888875 322 24455432 133568
Q ss_pred HHHHHHHHHHHHcCCcEEeccCccccc--------CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGIT--------MPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~--------~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+...++++.+.+.|+|.|.+. .|.. .|....++.+.+++.++ ++|.. .-+-. ....+..+++.
T Consensus 241 ~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~----iPVi~-~G~i~--t~~~a~~~l~~ 311 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG----IPVIA-VGLIT--DPEQAEAILES 311 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC----CCEEE-eCCCC--CHHHHHHHHHc
Confidence 888999999999999998863 2211 12223466677887763 44432 11111 24456667777
Q ss_pred C-CCEE
Q 013498 306 G-ARQV 310 (442)
Q Consensus 306 G-a~~v 310 (442)
| ||.|
T Consensus 312 g~aD~V 317 (336)
T cd02932 312 GRADLV 317 (336)
T ss_pred CCCCee
Confidence 7 5554
No 349
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=87.11 E-value=12 Score=37.20 Aligned_cols=132 Identities=21% Similarity=0.210 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhC
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANT 276 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~ 276 (442)
...++++.+++.+ +.+. .+|-+.-.+..+.+.++..| ..|+.|.|++.+-.=+ ++..-++.+|+.+
T Consensus 102 ~t~~~v~~~~~~~---~~i~---~TRKt~Pg~r~l~k~Av~~GGg~~HR~~L~d~ilikdnHi~~~G~~~~av~~~r~~~ 175 (265)
T TIGR00078 102 ATRKYVEAARGTN---VRIA---DTRKTTPGLRLLEKYAVRVGGGDNHRLGLSDAVMIKDNHIAAAGSIEKAVKRARAAA 175 (265)
T ss_pred HHHHHHHHhcCCC---eEEE---ecCCCChhhhHHHHHHHHhcCCcccCCCcccceeeeccHHHHhCCHHHHHHHHHHhC
Confidence 3456666666554 3332 26666666777787777775 3578888866543222 2456678888888
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHH
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 356 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~l 356 (442)
|. +.+|++=+|| +.-+++|.++|||+|-. ||...|++-...+........-.--||+++.+.++
T Consensus 176 ~~--~~~Igvev~t-----~eea~~A~~~gaDyI~l---------d~~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~ 239 (265)
T TIGR00078 176 PF--ALKIEVEVES-----LEEAEEAAEAGADIIML---------DNMKPEEIKEAVQLLKGRVLLEASGGITLDNLEEY 239 (265)
T ss_pred CC--CCeEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 74 3567777776 46788999999999854 66666776655543211101122347899998777
Q ss_pred HH
Q 013498 357 SK 358 (442)
Q Consensus 357 s~ 358 (442)
++
T Consensus 240 a~ 241 (265)
T TIGR00078 240 AE 241 (265)
T ss_pred HH
Confidence 63
No 350
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.05 E-value=15 Score=36.78 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCH-----HHHHHHHHHHHHhCC
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMP-----TEFGKLIADIKANTP 277 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P-----~~v~~li~~l~~~~p 277 (442)
..++++.++ |.. +.+. .+|-....+..+.+.++..| ..|+.|.|++=+-.= ..+.+-++.+|+.+|
T Consensus 113 t~~~v~~~~--~~~-~~i~---~TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~vlikdnHi~~~g~~~~~v~~aR~~~~ 186 (277)
T PRK08072 113 TRKAVLALD--DSH-IRIC---DTRKTTPGLRMFDKYAVVCGGGFNHRFGLYDGVMIKDNHIAFCGSITKAVTSVREKLG 186 (277)
T ss_pred HHHHHHHhc--CCC-eEEE---ecCCCCcchhHHHHHHHHhcCCcccCCCCCceEEEchhHHHhhCCHHHHHHHHHHhCC
Confidence 345555553 332 4443 35555556777777777775 357777777522111 127778888999887
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHH
Q 013498 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 357 (442)
Q Consensus 278 ~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls 357 (442)
. ...|++=+|| ..-+..|.++|||+|-. .|.++|++-...+.......--.--||+.+.+.++.
T Consensus 187 ~--~~~Igvsv~t-----leea~~A~~~gaDyI~l---------D~~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a 250 (277)
T PRK08072 187 H--MVKIEVETET-----EEQVREAVAAGADIIMF---------DNRTPDEIREFVKLVPSAIVTEASGGITLENLPAYG 250 (277)
T ss_pred C--CCEEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHH
Confidence 4 3568888886 46677888999999944 356777766555543211000112378899887776
Q ss_pred H
Q 013498 358 K 358 (442)
Q Consensus 358 ~ 358 (442)
+
T Consensus 251 ~ 251 (277)
T PRK08072 251 G 251 (277)
T ss_pred H
Confidence 4
No 351
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.02 E-value=7.9 Score=38.75 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCc--ccccC-HHHHHHHHHHHHHhCCCCcce
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDT--VGITM-PTEFGKLIADIKANTPGIENV 282 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT--~G~~~-P~~v~~li~~l~~~~p~~~~v 282 (442)
++++.+.|++.|+..-.|++ .+.+.+..+++.+.+.+...|--.-. +.... ...+..++..+.+..+ .+
T Consensus 4 ~~~~l~~A~~~~yav~Afn~-----~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~v 75 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGAFNF-----NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS---IV 75 (282)
T ss_pred HHHHHHHHHHCCceEEEEEE-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC---CC
Confidence 45678889999985346666 46789999999999998776544322 22222 3557777777777663 16
Q ss_pred eEEEe-ecCCcchHHHHHHHHHHhCCCEE--Eeccc
Q 013498 283 VISTH-CQNDLGLSTANTIAGACAGARQV--EVTIN 315 (442)
Q Consensus 283 ~i~~H-~HNDlGLA~ANalaAl~aGa~~v--d~Tv~ 315 (442)
|+.+| .|-+ -+.....|+++|++.| |.+-.
T Consensus 76 pv~lhlDH~~---~~e~i~~ai~~Gf~sVmid~s~l 108 (282)
T TIGR01859 76 PVALHLDHGS---SYESCIKAIKAGFSSVMIDGSHL 108 (282)
T ss_pred eEEEECCCCC---CHHHHHHHHHcCCCEEEECCCCC
Confidence 88888 4543 4677888999998763 44433
No 352
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.01 E-value=23 Score=32.07 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCcEEeccCcccccC---HHHHHHHHHHHHHhC-CCCcceeEEEe--ecCCcchHHHH--HHHHHH
Q 013498 233 RKFLYEILGEVIKVGATTLNIPDTVGITM---PTEFGKLIADIKANT-PGIENVVISTH--CQNDLGLSTAN--TIAGAC 304 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~laDT~G~~~---P~~v~~li~~l~~~~-p~~~~v~i~~H--~HNDlGLA~AN--alaAl~ 304 (442)
.+...+.++.+.++|+|.+.+.-..+... ++.+.+.++.+.+.. .+ +++-+. .+......... +..+.+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~pv~iy~~p~~~~~~~~~~~~~~~~~~ 140 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGG---LPLKVILETRGLKTADEIAKAARIAAE 140 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCC---ceEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67888999999999999998876665543 577888888888875 22 344332 22222222222 223457
Q ss_pred hCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 305 AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 305 aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
.|++.|..+.... .|+..++.+....+
T Consensus 141 ~g~~~iK~~~~~~---~~~~~~~~~~~i~~ 167 (201)
T cd00945 141 AGADFIKTSTGFG---GGGATVEDVKLMKE 167 (201)
T ss_pred hCCCEEEeCCCCC---CCCCCHHHHHHHHH
Confidence 8999998877432 24555665544433
No 353
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=86.92 E-value=28 Score=35.75 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc--EEec--cCcccccCHHHHH--HHHHHHHHhCCCCcc
Q 013498 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT--TLNI--PDTVGITMPTEFG--KLIADIKANTPGIEN 281 (442)
Q Consensus 208 ~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad--~I~l--aDT~G~~~P~~v~--~li~~l~~~~p~~~~ 281 (442)
++++++.+.|.+ |.++. +-++.+++.+.++.+.+.|.+ .|.| |= .++-+|.+.. ..|..|++.++
T Consensus 124 pLL~~~A~~gkP-vilSt---Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC~-s~YP~~~~~~nL~~I~~Lk~~f~---- 194 (329)
T TIGR03569 124 PLLKKIARFGKP-VILST---GMATLEEIEAAVGVLRDAGTPDSNITLLHCT-TEYPAPFEDVNLNAMDTLKEAFD---- 194 (329)
T ss_pred HHHHHHHhcCCc-EEEEC---CCCCHHHHHHHHHHHHHcCCCcCcEEEEEEC-CCCCCCcccCCHHHHHHHHHHhC----
Confidence 466667777875 66643 335788888888888888875 2444 53 3444554443 45678888874
Q ss_pred eeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 282 VVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 282 v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
++|++=-|- .| ..-+++|+..||+.|+-=+
T Consensus 195 ~pVG~SdHt-~G--~~~~~aAvalGA~iIEkH~ 224 (329)
T TIGR03569 195 LPVGYSDHT-LG--IEAPIAAVALGATVIEKHF 224 (329)
T ss_pred CCEEECCCC-cc--HHHHHHHHHcCCCEEEeCC
Confidence 678885554 35 5677999999999987543
No 354
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=86.91 E-value=21 Score=38.56 Aligned_cols=85 Identities=18% Similarity=0.147 Sum_probs=58.0
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHc
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~ 246 (442)
.++.++.+|+.+|.+-+=+.+-.....+|+. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.
T Consensus 271 ~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L 348 (488)
T PRK08207 271 KLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKL 348 (488)
T ss_pred HHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 3566677899999886655555555666662 2345667889999999985343322211 234577888899999999
Q ss_pred CCcEEecc
Q 013498 247 GATTLNIP 254 (442)
Q Consensus 247 Gad~I~la 254 (442)
+++.+.+-
T Consensus 349 ~pd~isv~ 356 (488)
T PRK08207 349 NPESLTVH 356 (488)
T ss_pred CcCEEEEE
Confidence 99887764
No 355
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=86.89 E-value=6.8 Score=37.89 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCC
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGA 307 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL-A~ANalaAl~aGa 307 (442)
+-.+.+.-.+.++.+.+.+.+.+.|.--......+++.++++.+...+|. +.+.- . +|. ...+.+.++..|+
T Consensus 63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~--~~pr~--l---~G~~~P~~i~~~v~~Gv 135 (238)
T PF01702_consen 63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP--DKPRY--L---LGVGTPEEILEAVYLGV 135 (238)
T ss_dssp -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T--TS-EE--E---TTB-SHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc--cccee--c---cCCCCHHHHHHHHHcCC
Confidence 34455656677777777668888887765555788999999999998875 34543 3 333 4678889999999
Q ss_pred CEEEecccccccccCcc
Q 013498 308 RQVEVTINGIGERAGNA 324 (442)
Q Consensus 308 ~~vd~Tv~GlGeraGNa 324 (442)
|.+|++..-.-.+-|.+
T Consensus 136 D~fDs~~p~~~A~~G~a 152 (238)
T PF01702_consen 136 DLFDSSYPTRLARHGIA 152 (238)
T ss_dssp -EEEESHHHHHHHTTEE
T ss_pred cEEcchHHHHHHhccee
Confidence 99999886544444544
No 356
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=86.77 E-value=13 Score=36.34 Aligned_cols=153 Identities=22% Similarity=0.321 Sum_probs=85.1
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEcc-------------CC---CCh--hHHHHHHHHHHHhcccccccCCccceEee
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGF-------------PA---ASK--EDFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~-------------p~---~~~--~d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
.+.|+.++-.+|.+...+.|++.+-.-| |. .|. ..+..++.+++. + .|.|..
T Consensus 50 ~~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~t---------g-kPvIlS 119 (241)
T PF03102_consen 50 KLELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKT---------G-KPVILS 119 (241)
T ss_dssp HHSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-----------S-EEEE
T ss_pred HhcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHh---------C-CcEEEE
Confidence 3569999999999999999998877644 10 011 134566666653 1 367888
Q ss_pred ecccchhhHHHHHHHHHhCCCCEEEEeecCChHH-HHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEEccCCCCCCCHH
Q 013498 157 LSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIH-MEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 157 ~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h-~~~~l~~s~~e~l~~~~~~v~~ar-~~G~~~V~f~~edasr~d~~ 234 (442)
-+.+..++|+.|++.++..|-..+.+.-++|..- -....|. ..+...+ ..|+. |.|+ |-+. .
T Consensus 120 TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL----------~~i~~L~~~f~~~-vG~S--DHt~---g 183 (241)
T PF03102_consen 120 TGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNL----------RVIPTLKERFGVP-VGYS--DHTD---G 183 (241)
T ss_dssp -TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--T----------THHHHHHHHSTSE-EEEE--E-SS---S
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcCh----------HHHHHHHHhcCCC-EEeC--CCCC---C
Confidence 8888999999999998666777676665554311 1111121 2333334 45653 6554 2222 2
Q ss_pred HHHHHHHHHHHcCCcEE----ec------cCcccccCHHHHHHHHHHHHHh
Q 013498 235 FLYEILGEVIKVGATTL----NI------PDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I----~l------aDT~G~~~P~~v~~li~~l~~~ 275 (442)
.. ..-.++..||..| .+ .|..-.+.|+++.++|+.+|+.
T Consensus 184 ~~--~~~~AvalGA~vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ir~~ 232 (241)
T PF03102_consen 184 IE--APIAAVALGARVIEKHFTLDRNLKGPDHKFSLEPDELKQLVRDIREV 232 (241)
T ss_dssp SH--HHHHHHHTT-SEEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHcCCeEEEEEEECCCCCCCCChhhcCCHHHHHHHHHHHHHH
Confidence 22 2335567888643 33 5667779999999999999864
No 357
>PLN02623 pyruvate kinase
Probab=86.77 E-value=55 Score=36.15 Aligned_cols=199 Identities=16% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.+|..++..| +...+.|||+|-+.|- .+.+|...++.+.+..+.. ...++-.. +.+.++..-+.+. +
T Consensus 275 ~lTekD~~di-~f~~~~~vD~ialSFV-r~a~DV~~~r~~l~~~~~~-------~~iiakIE--t~eaVeNldeIl~--g 341 (581)
T PLN02623 275 SITEKDWEDI-KFGVENKVDFYAVSFV-KDAQVVHELKDYLKSCNAD-------IHVIVKIE--SADSIPNLHSIIT--A 341 (581)
T ss_pred CCCHHHHHHH-HHHHHcCCCEEEECCC-CCHHHHHHHHHHHHHcCCc-------ceEEEEEC--CHHHHHhHHHHHH--h
Confidence 3777787775 5777899999999775 5677777777666543211 11121111 4455554333332 6
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc------CCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP------EDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~------edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
.|.| +++-.|+-.+ ++ .+++....++.++.|+++|.. |.+.. ....+.+..++.++. .+...|+|.
T Consensus 342 ~DgI--mIgrgDLgve--lg--~~~v~~~qk~Ii~~~~~~gKp-vivaTQMLESMi~~~~PTRAEv~Dva-~av~dG~d~ 413 (581)
T PLN02623 342 SDGA--MVARGDLGAE--LP--IEEVPLLQEEIIRRCRSMGKP-VIVATNMLESMIVHPTPTRAEVSDIA-IAVREGADA 413 (581)
T ss_pred CCEE--EECcchhhhh--cC--cHHHHHHHHHHHHHHHHhCCC-EEEECchhhhcccCCCCCchhHHHHH-HHHHcCCCE
Confidence 7754 5566665443 23 377888889999999999986 44322 122222333444444 345679999
Q ss_pred Eecc-CcccccCHHHHHHHHHHHHHhCCC-Ccce-e---EEEeecCC--cchHHHHHHHHHHhCCCEEEecccc
Q 013498 251 LNIP-DTVGITMPTEFGKLIADIKANTPG-IENV-V---ISTHCQND--LGLSTANTIAGACAGARQVEVTING 316 (442)
Q Consensus 251 I~la-DT~G~~~P~~v~~li~~l~~~~p~-~~~v-~---i~~H~HND--lGLA~ANalaAl~aGa~~vd~Tv~G 316 (442)
|.|. ||.=-..|.+.-+.+..+....-. .... . +.-+..++ --+|.+....|-..++..|--|-.|
T Consensus 414 vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG 487 (581)
T PLN02623 414 VMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTG 487 (581)
T ss_pred EEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCc
Confidence 9997 676667898887777777543211 0000 0 00111112 2345555566777788766666554
No 358
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=86.73 E-value=14 Score=37.95 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc---------CCCCh----hHHHHHHHHHHHhccccc-ccCCccceEeeecccc
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF---------PAASK----EDFEAVRTIAKEVGNAVD-AESGYVPVICGLSRCN 161 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~---------p~~~~----~d~e~v~~l~~~~~~~~~-~~~~l~~~i~~~~r~~ 161 (442)
+.+.+.--...++.++++|||.|-+|. +...+ +...-++.+++-.++.+- .+ .| ...+....
T Consensus 37 ivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaD---mP-fgSY~~s~ 112 (332)
T PLN02424 37 ITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGD---LP-FGSYESST 112 (332)
T ss_pred EEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeC---CC-CCCCCCCH
Confidence 334444446678999999999999973 32212 122334444443222100 00 01 00122223
Q ss_pred hhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----EccCC---------C
Q 013498 162 ERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPED---------A 228 (442)
Q Consensus 162 ~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~ed---------a 228 (442)
++-++.+.+.++++|.+.|++--.. ....+.|+.+.+.|+. |+ +++.. -
T Consensus 113 e~av~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIP-V~gHiGLtPQs~~~lGGykvq 174 (332)
T PLN02424 113 DQAVESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIA-VMGHVGLTPQAISVLGGFRPQ 174 (332)
T ss_pred HHHHHHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCC-EEEeecccceeehhhcCcccc
Confidence 4445666676777899999875432 1223566667789987 55 44321 1
Q ss_pred CCCC--HHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 229 GRSD--RKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 229 sr~d--~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
+|+. .+.+.+-++.+.++||..|.|. +.|.. +.+.|.+.++
T Consensus 175 Gr~~~~a~~li~dA~ale~AGAf~ivLE-----~Vp~~---la~~It~~l~ 217 (332)
T PLN02424 175 GRTAESAVKVVETALALQEAGCFAVVLE-----CVPAP---VAAAITSALQ 217 (332)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCcEEEEc-----CCcHH---HHHHHHHhCC
Confidence 2222 3467777888899999999985 45555 4555555553
No 359
>PRK07360 FO synthase subunit 2; Reviewed
Probab=86.71 E-value=4.9 Score=41.67 Aligned_cols=130 Identities=19% Similarity=0.122 Sum_probs=79.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcEEeccCcccccC--HHHHHHHHHHHHHhCCCCcceeEEEee---------cCCcchHH
Q 013498 228 AGRSDRKFLYEILGEVIKVGATTLNIPDTVGITM--PTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLST 296 (442)
Q Consensus 228 asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~--P~~v~~li~~l~~~~p~~~~v~i~~H~---------HNDlGLA~ 296 (442)
..+.+++.+.+.++.+.+.|+.+|.|.--.+-.. ++.+.++++.+|+.+|+ +.+|+ -++.|+..
T Consensus 88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~-----i~i~a~s~~ei~~~~~~~G~~~ 162 (371)
T PRK07360 88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD-----IHLHAFSPMEVYFAAREDGLSY 162 (371)
T ss_pred CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC-----cceeeCCHHHHHHHHhhcCCCH
Confidence 3457899999999999999999999983222222 45688999999998774 33443 33678887
Q ss_pred HHHHHHH-HhCCCEEEeccccccc-------ccCcccHHHHHHHHH---hccccccCCcc--CCCChhHHHHHHHHHHH
Q 013498 297 ANTIAGA-CAGARQVEVTINGIGE-------RAGNASLEEVVMAFK---CRGEHILGGLY--TGINTRHIVMASKMVEE 362 (442)
Q Consensus 297 ANalaAl-~aGa~~vd~Tv~GlGe-------raGNa~lEevv~~L~---~~g~~~~~G~~--tgidl~~L~~ls~~v~~ 362 (442)
-..+..+ +||++.+..|-.-+.- ..+..++++.+..++ ..|.....|.- .+=..+...+....+.+
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~ 241 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILRE 241 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHH
Confidence 7766555 6899998633221110 245667766665554 44433222211 23345555555555544
No 360
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.71 E-value=9.9 Score=38.24 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhCC
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTP 277 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~p 277 (442)
..++++.++ |.. +.+. .+|-..-.+..+.+.++.+| ..|+.|.|++-+-.=+ .+.+-++.+|+..|
T Consensus 121 T~~~v~~~~--~~~-~~i~---~TRKt~Pg~R~l~k~AV~~GGg~~HR~gL~d~ilikdNHi~~~g~i~~av~~~r~~~~ 194 (288)
T PRK07428 121 TRQYVEKIA--DLP-TQLV---DTRKTTPGLRLLEKYATQVGGAINHRMGLDDAVMIKDNHIQAAGGIGEAITRIRQRIP 194 (288)
T ss_pred HHHHHHHhc--CCC-eEEE---ecCCCCCcchHHHHHHHHhcCcccccCCchheeeecHHHHHHhCCHHHHHHHHHHhCC
Confidence 345555552 322 4443 24555556777777777775 3688888887553322 26788888999887
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhc---cccccCCccCCCChhHHH
Q 013498 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCR---GEHILGGLYTGINTRHIV 354 (442)
Q Consensus 278 ~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~---g~~~~~G~~tgidl~~L~ 354 (442)
. ...|++=+|| ..-+.+|+++|||+|-.- |.+.|++-...... ..+..--.--||+++.+.
T Consensus 195 ~--~~~I~VEv~t-----leea~eA~~~GaD~I~LD---------n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~ 258 (288)
T PRK07428 195 Y--PLTIEVETET-----LEQVQEALEYGADIIMLD---------NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIR 258 (288)
T ss_pred C--CCEEEEECCC-----HHHHHHHHHcCCCEEEEC---------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 3 2457777776 566788999999998543 77777776655532 211111234589999997
Q ss_pred HHH
Q 013498 355 MAS 357 (442)
Q Consensus 355 ~ls 357 (442)
+++
T Consensus 259 ~ya 261 (288)
T PRK07428 259 AVA 261 (288)
T ss_pred HHH
Confidence 776
No 361
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=86.67 E-value=23 Score=35.79 Aligned_cols=143 Identities=11% Similarity=-0.008 Sum_probs=78.0
Q ss_pred cchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHh-CCCHHHHHHHHHHHHHHHHHc-CCC-eEEEccCCCCCCCHHHH
Q 013498 160 CNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKL-RKTKQQVVEIARSMVKFARSL-GCD-DVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 160 ~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l-~~s~~e~l~~~~~~v~~ar~~-G~~-~V~f~~edasr~d~~~l 236 (442)
.+.+++..+.+.++.+|.+.|.+..+..--+...+. |....+..+.+.+.++.+++. ++. .|.+..-. ..+....
T Consensus 72 ~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~--~~~~~~~ 149 (319)
T TIGR00737 72 SDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGW--DDAHINA 149 (319)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEccc--CCCcchH
Confidence 467788777777777899998886654322222222 222222334455555555543 443 12222110 0112346
Q ss_pred HHHHHHHHHcCCcEEeccC-cc-cccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH-HHHHHHHH-HhCCCEEEe
Q 013498 237 YEILGEVIKVGATTLNIPD-TV-GITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS-TANTIAGA-CAGARQVEV 312 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laD-T~-G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA-~ANalaAl-~aGa~~vd~ 312 (442)
.++++.+.++|++.|.+-- |. +...+....+.++.+++.++ ++|.. = -|.. ..-+..++ ..||+.|-.
T Consensus 150 ~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~----ipvi~--n--GgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR----IPVIG--N--GDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred HHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC----CcEEE--e--CCCCCHHHHHHHHHhhCCCEEEE
Confidence 6888899999999987731 11 12222234678888888764 44432 1 2222 23455666 468888865
No 362
>PRK00208 thiG thiazole synthase; Reviewed
Probab=86.59 E-value=5.9 Score=38.89 Aligned_cols=168 Identities=14% Similarity=0.187 Sum_probs=90.1
Q ss_pred HHHHHHhHcCCCEEEEccCCCCh--hHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh-CCCCEEE
Q 013498 105 DIARQLAKLGVDIIEAGFPAASK--EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY-AKRPRIH 181 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG~p~~~~--~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~-~g~~~v~ 181 (442)
.+.+.|...|-+.+-+.--.... ..-++++.|... + . .+.|+..| |+..++-|..|- ..++ .+.++|.
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~-~-----~-~~lpNTaG-~~ta~eAv~~a~-lare~~~~~~iK 95 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPL-G-----V-TLLPNTAG-CRTAEEAVRTAR-LAREALGTNWIK 95 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhcccc-C-----C-EECCCCCC-CCCHHHHHHHHH-HHHHHhCCCeEE
Confidence 45677888999988886422211 111233333211 1 0 23455544 454555554432 1122 3677888
Q ss_pred EeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCCeEE-EccCCCCCCCHHHHHHHHHHHHHcCCcEEecc--C
Q 013498 182 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL---GCDDVE-FSPEDAGRSDRKFLYEILGEVIKVGATTLNIP--D 255 (442)
Q Consensus 182 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~---G~~~V~-f~~edasr~d~~~l~~~~~~~~~~Gad~I~la--D 255 (442)
+-+-..+. ..+....+.++.++++ |+. |. ++..| + ..++++.++|++.| .+ .
T Consensus 96 lEVi~d~~-----------~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d-----~----~~ak~l~~~G~~~v-mPlg~ 153 (250)
T PRK00208 96 LEVIGDDK-----------TLLPDPIETLKAAEILVKEGFV-VLPYCTDD-----P----VLAKRLEEAGCAAV-MPLGA 153 (250)
T ss_pred EEEecCCC-----------CCCcCHHHHHHHHHHHHHCCCE-EEEEeCCC-----H----HHHHHHHHcCCCEe-CCCCc
Confidence 85433221 1123344556666666 985 55 66544 2 56778888899988 33 5
Q ss_pred cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 256 TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 256 T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
..|...+-.-.++++.+++.. ++ .+.++-+.|. -.-+..|++.||+.|
T Consensus 154 pIGsg~gi~~~~~i~~i~e~~-~v-pVIveaGI~t-----peda~~AmelGAdgV 201 (250)
T PRK00208 154 PIGSGLGLLNPYNLRIIIEQA-DV-PVIVDAGIGT-----PSDAAQAMELGADAV 201 (250)
T ss_pred CCCCCCCCCCHHHHHHHHHhc-CC-eEEEeCCCCC-----HHHHHHHHHcCCCEE
Confidence 555444433355577777753 22 1444433332 346678888999886
No 363
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=86.53 E-value=33 Score=35.43 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhCCCCEEE--EeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC------CCC--CCC
Q 013498 163 RDIKTAWEAVKYAKRPRIH--TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE------DAG--RSD 232 (442)
Q Consensus 163 ~dI~~a~e~l~~~g~~~v~--i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e------das--r~d 232 (442)
.+++.|++. |.+-|. +|.. |+. ..+.++++.+.++.|++.|+..+.+... +.. .++
T Consensus 150 ~sVedAlrL----GAdAV~~tvy~G-s~~---------E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~ 215 (348)
T PRK09250 150 ASVEDALRL----GAVAVGATIYFG-SEE---------SRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTA 215 (348)
T ss_pred ecHHHHHHC----CCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCccccccc
Confidence 356777775 666554 4443 332 2467889999999999999974443221 111 345
Q ss_pred HHHHHHHHHHHHHcCCcEEeccCc
Q 013498 233 RKFLYEILGEVIKVGATTLNIPDT 256 (442)
Q Consensus 233 ~~~l~~~~~~~~~~Gad~I~laDT 256 (442)
++.+.-.++.+.+.|||.|-..=|
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp 239 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLP 239 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCC
Confidence 888989999999999998765433
No 364
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.49 E-value=7.4 Score=38.59 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=66.4
Q ss_pred HHHHhHcCCCEEEEc---------cCCC---Ch-hH-HHHHHHHHHHhcccccccCCccceEeeecccch-hhHHHHHHH
Q 013498 107 ARQLAKLGVDIIEAG---------FPAA---SK-ED-FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNE-RDIKTAWEA 171 (442)
Q Consensus 107 a~~L~~~GV~~IEvG---------~p~~---~~-~d-~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~-~dI~~a~e~ 171 (442)
++...+.|+|.|-+- .++. .| .| -+.+.++++++...+. -.|+++|.+-.++ .+++.-++.
T Consensus 28 Ak~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~----~tPViaGv~atDP~~~~~~fl~~ 103 (268)
T PF09370_consen 28 AKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVK----DTPVIAGVCATDPFRDMDRFLDE 103 (268)
T ss_dssp HHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-S----SS-EEEEE-TT-TT--HHHHHHH
T ss_pred hHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhcc----CCCEEEEecCcCCCCcHHHHHHH
Confidence 667788899998872 1110 01 11 2344455554432221 2588988886543 688888999
Q ss_pred HHhCCCCEEEEeecCChH--HHHHHh---CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc
Q 013498 172 VKYAKRPRIHTFIATSGI--HMEHKL---RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 172 l~~~g~~~v~i~~~~Sd~--h~~~~l---~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~ 246 (442)
++..|...|.-|-.+.-+ +.+.+| |++.+ +=.++++.|+++|+-.+.|. .+++ -++++.++
T Consensus 104 lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~----~EVemi~~A~~~gl~T~~yv------f~~e----~A~~M~~A 169 (268)
T PF09370_consen 104 LKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYD----REVEMIRKAHEKGLFTTAYV------FNEE----QARAMAEA 169 (268)
T ss_dssp HHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HH----HHHHHHHHHHHTT-EE--EE-------SHH----HHHHHHHH
T ss_pred HHHhCCceEEECCcceeeccHHHHHHHhcCCCHH----HHHHHHHHHHHCCCeeeeee------cCHH----HHHHHHHc
Confidence 999999998887444432 333332 44433 33578999999997433332 2334 34556689
Q ss_pred CCcEEec
Q 013498 247 GATTLNI 253 (442)
Q Consensus 247 Gad~I~l 253 (442)
|||.|+.
T Consensus 170 GaDiiv~ 176 (268)
T PF09370_consen 170 GADIIVA 176 (268)
T ss_dssp T-SEEEE
T ss_pred CCCEEEe
Confidence 9997654
No 365
>PRK06852 aldolase; Validated
Probab=86.47 E-value=14 Score=37.49 Aligned_cols=184 Identities=10% Similarity=0.078 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc-----------cchhhH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-----------CNERDI 165 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-----------~~~~dI 165 (442)
....++-..+++.+.+.|++.+-+-. + .++.......+ + .+...+.+.+. ...-++
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~~-G-------~l~~~~~~~~~-~----~lIlkl~~~t~l~~~~~~~p~~~l~~sV 121 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQL-G-------LIARYGMDYPD-V----PYLVKLNSKTNLVKTSQRDPLSRQLLDV 121 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeCH-H-------HHHhhccccCC-C----cEEEEECCCCCcCCcccCCccccceecH
Confidence 33555667788999999999887731 1 11111111000 0 11111211111 112246
Q ss_pred HHHHHHHHh--CCCCEE--EEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC----CCCCCCHHHHH
Q 013498 166 KTAWEAVKY--AKRPRI--HTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE----DAGRSDRKFLY 237 (442)
Q Consensus 166 ~~a~e~l~~--~g~~~v--~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e----dasr~d~~~l~ 237 (442)
+.|++..+. .|.+-| ++|+. |+ ...+.++++.+.++.|++.|+..+.+... -....+++.+.
T Consensus 122 eeAvrlG~~~~~~AdAV~v~v~~G-s~---------~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia 191 (304)
T PRK06852 122 EQVVEFKENSGLNILGVGYTIYLG-SE---------YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIA 191 (304)
T ss_pred HHHHhcCCccCCCceEEEEEEecC-CH---------HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHH
Confidence 777765211 225544 44544 33 23467889999999999999974432221 12335778999
Q ss_pred HHHHHHHHcCCcEEeccCcc--cccCHHHHHHHHHHHHHhCCCCcceeEEEee--c-CCcchHHHHHHHHHH-hCCCEEE
Q 013498 238 EILGEVIKVGATTLNIPDTV--GITMPTEFGKLIADIKANTPGIENVVISTHC--Q-NDLGLSTANTIAGAC-AGARQVE 311 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~--G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~--H-NDlGLA~ANalaAl~-aGa~~vd 311 (442)
-.++.+.+.|||.|-..=|. |-..|+.+.+.++. .+. ++|-+=. . ++. -.+..+..|++ +||..+.
T Consensus 192 ~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~----~g~---vpVviaGG~k~~~~-e~L~~v~~ai~~aGa~Gv~ 263 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLA----AGR---TKVVCAGGSSTDPE-EFLKQLYEQIHISGASGNA 263 (304)
T ss_pred HHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHh----CCC---CcEEEeCCCCCCHH-HHHHHHHHHHHHcCCceee
Confidence 99999999999988776542 22457777776654 211 3343322 1 232 25777778888 8887763
No 366
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=86.11 E-value=31 Score=32.92 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhHcCCCEEEEccC----CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFP----AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p----~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.+-+++++.+.+.|++.|=+--. ...+.+++.++.+++... .|.+.+=.-...+|++...+ .|
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~---------~pv~~~ggi~~~~d~~~~~~----~G 96 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREPLFELISNLAEECF---------MPLTVGGGIRSLEDAKKLLS----LG 96 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCC---------CCEEEECCCCCHHHHHHHHH----cC
Confidence 36788999999999996655221 122345778888887542 13344333335667766544 37
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--CCC---C----------CCCHHHHHHHHH
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP--EDA---G----------RSDRKFLYEILG 241 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--eda---s----------r~d~~~l~~~~~ 241 (442)
++.|.+- .. . -.+ .+.+.++++. .|-+.+.++. -.. + ........++++
T Consensus 97 ~~~vilg--~~-~------l~~----~~~~~~~~~~---~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (232)
T TIGR03572 97 ADKVSIN--TA-A------LEN----PDLIEEAARR---FGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAR 160 (232)
T ss_pred CCEEEEC--hh-H------hcC----HHHHHHHHHH---cCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHH
Confidence 7776432 11 0 011 1222333322 2322122221 110 0 111223568888
Q ss_pred HHHHcCCcEEeccC--cccccCHHHHHHHHHHHHHhC
Q 013498 242 EVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 242 ~~~~~Gad~I~laD--T~G~~~P~~v~~li~~l~~~~ 276 (442)
.+.+.|++.|.+-| ..|.... .-.++++.+++..
T Consensus 161 ~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~ 196 (232)
T TIGR03572 161 EAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV 196 (232)
T ss_pred HHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC
Confidence 99999999999988 3343322 2366777787765
No 367
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=86.04 E-value=9.3 Score=37.35 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=64.6
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
..++.++.+++++.|.+.|++.||--+| +++++..+.+.+... +|...+=.-....++...++. .
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEeP~~---~~d~~~~~~l~~~~~---------ipia~dE~~~~~~~~~~~i~~---~ 202 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQPLP---ADDLEGRAALARATD---------TPIMADESAFTPHDAFRELAL---G 202 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEECCCC---cccHHHHHHHHhhCC---------CCEEECCCCCCHHHHHHHHHh---C
Confidence 4478999999999999999999998443 346677777776531 232222111244566555543 3
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ 225 (442)
.++.|.+=. ++-.-+..+.+++++|+..|+. +.++.
T Consensus 203 ~~d~v~~k~-------------~~~GGi~~~~~~~~~A~~~gi~-~~~~~ 238 (265)
T cd03315 203 AADAVNIKT-------------AKTGGLTKAQRVLAVAEALGLP-VMVGS 238 (265)
T ss_pred CCCEEEEec-------------ccccCHHHHHHHHHHHHHcCCc-EEecC
Confidence 456554311 1123356778899999999986 77654
No 368
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.94 E-value=32 Score=32.60 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchh----------hHHHH
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER----------DIKTA 168 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~----------dI~~a 168 (442)
..++..++++.+.+.|+..++++.+ +.++.+.+. .-.|.+.-+.+--.+ +++.+
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~~~-------~~~~~i~~~---------~~iPil~~~~~~~~~~~~~ig~~~~~~~~a 88 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRANGV-------EDIRAIRAR---------VDLPIIGLIKRDYPDSEVYITPTIEEVDAL 88 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcCCH-------HHHHHHHHh---------CCCCEEEEEecCCCCCCceeCCCHHHHHHH
Q ss_pred HHHHHhCCCCEEEEeecC----ChHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CCeEEEccCCCCCCCHHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIAT----SGIHMEHKLRKTKQQVVEIARSMVKFARSLG-CDDVEFSPEDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~----Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G-~~~V~f~~edasr~d~~~l~~~~~~~ 243 (442)
.++ |.+.|.+-.+. .+ +...+.++.+++.| +. +..++ .+++++ +.+
T Consensus 89 ~~a----Gad~I~~~~~~~~~p~~---------------~~~~~~i~~~~~~g~~~-iiv~v-----~t~~ea----~~a 139 (219)
T cd04729 89 AAA----GADIIALDATDRPRPDG---------------ETLAELIKRIHEEYNCL-LMADI-----STLEEA----LNA 139 (219)
T ss_pred HHc----CCCEEEEeCCCCCCCCC---------------cCHHHHHHHHHHHhCCe-EEEEC-----CCHHHH----HHH
Q ss_pred HHcCCcEE--eccCccccc--CHHHHHHHHHHHHHhCCCCcceeEEEeecCCcch-HHHHHHHHHHhCCCEE
Q 013498 244 IKVGATTL--NIPDTVGIT--MPTEFGKLIADIKANTPGIENVVISTHCQNDLGL-STANTIAGACAGARQV 310 (442)
Q Consensus 244 ~~~Gad~I--~laDT~G~~--~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGL-A~ANalaAl~aGa~~v 310 (442)
.++|+|.+ ...+..+.. ......++++.+++.+ ++++-. ..|. -..|+..++++||+.|
T Consensus 140 ~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~----~ipvia----~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 140 AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL----GIPVIA----EGRINSPEQAAKALELGADAV 203 (219)
T ss_pred HHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc----CCCEEE----eCCCCCHHHHHHHHHCCCCEE
No 369
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=85.93 E-value=60 Score=35.75 Aligned_cols=138 Identities=19% Similarity=0.246 Sum_probs=87.5
Q ss_pred CCCCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCc-cc
Q 013498 74 IPDPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VP 152 (442)
Q Consensus 74 ~~~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l-~~ 152 (442)
+.-.+.|.+--.|-= .....+.-++=+..|.++|.+++-+..| +.++.+.++.|.+.+... ++ +|
T Consensus 25 iGG~~PI~VQSMt~t-------~T~D~~atv~Qi~~L~~aGceiVRvtvp--~~~~A~al~~I~~~L~~~-----g~~iP 90 (606)
T PRK00694 25 VGSEHSIKIQSMTTT-------ATTDVDGTVRQICALQEWGCDIVRVTVQ--GLKEAQACEHIKERLIQQ-----GISIP 90 (606)
T ss_pred ECCCCceEEEecCCC-------CcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhcc-----CCCCC
Confidence 333444666554432 2345666677788899999999999887 456777777777662110 00 11
Q ss_pred eEeee----------------cccc----------------------------hhhHHHHHHHHHhCCCC-EEEEeecCC
Q 013498 153 VICGL----------------SRCN----------------------------ERDIKTAWEAVKYAKRP-RIHTFIATS 187 (442)
Q Consensus 153 ~i~~~----------------~r~~----------------------------~~dI~~a~e~l~~~g~~-~v~i~~~~S 187 (442)
-++.. .|.| ++.+...++..++.|++ ||.+--..-
T Consensus 91 LVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL 170 (606)
T PRK00694 91 LVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSL 170 (606)
T ss_pred EEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCc
Confidence 11100 0111 12333344555666776 676643333
Q ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 013498 188 GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (442)
Q Consensus 188 d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ 225 (442)
+-.+..++|-+++..++-+.+.++.+.++|+..+.|++
T Consensus 171 ~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~ 208 (606)
T PRK00694 171 SERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSM 208 (606)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 44666778889999999999999999999998888887
No 370
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=85.84 E-value=47 Score=34.41 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC--------hh------------HHHHHHHHHHHhcccccccCCccceEee
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS--------KE------------DFEAVRTIAKEVGNAVDAESGYVPVICG 156 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~--------~~------------d~e~v~~l~~~~~~~~~~~~~l~~~i~~ 156 (442)
.++.++...+++.-.++..+.|=-.+|... +. -...++.+++.. -+|+..=
T Consensus 28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~---------~VPValH 98 (350)
T PRK09197 28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHY---------GVPVILH 98 (350)
T ss_pred eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC---------CCCEEEE
Confidence 478899999999999999998755444211 11 113444444432 2343332
Q ss_pred eccc-c--hhhHHHHHHHH-------HhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE---
Q 013498 157 LSRC-N--ERDIKTAWEAV-------KYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--- 223 (442)
Q Consensus 157 ~~r~-~--~~dI~~a~e~l-------~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--- 223 (442)
+=-+ + .+.|++++++. ..+|...|. +. .| ..+.+|+++..++.+++|+..|+. |+-
T Consensus 99 LDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVM-iD-gS--------~lpfEeNI~~TkevVe~Ah~~Gvs-VEaELG 167 (350)
T PRK09197 99 TDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHM-ID-LS--------EEPLEENIEICSKYLERMAKAGMT-LEIELG 167 (350)
T ss_pred CCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEE-ee-CC--------CCCHHHHHHHHHHHHHHHHHcCCE-EEEEEe
Confidence 2222 2 44566666642 112366653 32 33 357889999999999999999984 532
Q ss_pred ---ccCCC----------CCCCHHHHHHHHHHHH-HcCCcE--EeccCcccccC---HHHHHHHHHHHHHhCCC-----C
Q 013498 224 ---SPEDA----------GRSDRKFLYEILGEVI-KVGATT--LNIPDTVGITM---PTEFGKLIADIKANTPG-----I 279 (442)
Q Consensus 224 ---~~eda----------sr~d~~~l~~~~~~~~-~~Gad~--I~laDT~G~~~---P~~v~~li~~l~~~~p~-----~ 279 (442)
+.||. ..++|+...+++++-- ..|+|. |.+.-.=|... |.--.++++.+++.+++ .
T Consensus 168 ~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~ 247 (350)
T PRK09197 168 VTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPA 247 (350)
T ss_pred ccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCC
Confidence 22322 2578888777776431 122364 44444446543 44556777777777620 0
Q ss_pred cceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 280 ENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 280 ~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
.++||.+|+=. |+..-.-..|++.|+.-|+.
T Consensus 248 ~~vPLVLHGgS--Gipde~i~~ai~~GI~KINi 278 (350)
T PRK09197 248 KPFDFVFHGGS--GSTLEEIREAVSYGVVKMNI 278 (350)
T ss_pred CCCCEEEeCCC--CCCHHHHHHHHHCCCeeEEe
Confidence 13778877654 66667778888888887754
No 371
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=85.78 E-value=4.5 Score=38.98 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=103.7
Q ss_pred CCHH-HHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc---cc--------hhhH
Q 013498 98 LTSK-EKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR---CN--------ERDI 165 (442)
Q Consensus 98 fs~e-~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r---~~--------~~dI 165 (442)
++.. +..++++...+.|++.|-+ .|.. ++...+..... . ..++.+.++-- .. ..++
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~av~v-~p~~-------~~~~~~~~~~~-~---~~~~~vi~fp~g~~~~~~k~~~~~~~~v 82 (236)
T PF01791_consen 15 MTGEEDIKKLCREAIEYGFDAVCV-TPGY-------VKPAAELLAGS-G---VKVGLVIGFPFGTSTTEPKGYDQIVAEV 82 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTSSEEEE-EGGG-------HHHHHHHSTTS-T---SEEEEEESTTTSSSTHHHHTCEEEHHHH
T ss_pred CCchhhHHHHHHHHHHhCCCEEEE-CHHH-------HHHHHHHhhcc-c---cccceEEEeCCCCCccccccccchHHHH
Confidence 3444 7888999999999999988 4433 22223332221 0 01122222211 11 1233
Q ss_pred HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc-----CCCCCCCHHHHHHHH
Q 013498 166 KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP-----EDAGRSDRKFLYEIL 240 (442)
Q Consensus 166 ~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-----edasr~d~~~l~~~~ 240 (442)
+.|++ .|.+.|.+.+..... ..-..+++++.+.+.++.|++.|++ |.+-+ +-....+++.+...+
T Consensus 83 e~A~~----~GAd~vd~vi~~~~~-----~~~~~~~~~~~i~~v~~~~~~~gl~-vIlE~~l~~~~~~~~~~~~~I~~a~ 152 (236)
T PF01791_consen 83 EEAIR----LGADEVDVVINYGAL-----GSGNEDEVIEEIAAVVEECHKYGLK-VILEPYLRGEEVADEKKPDLIARAA 152 (236)
T ss_dssp HHHHH----TT-SEEEEEEEHHHH-----HTTHHHHHHHHHHHHHHHHHTSEEE-EEEEECECHHHBSSTTHHHHHHHHH
T ss_pred HHHHH----cCCceeeeecccccc-----ccccHHHHHHHHHHHHHHHhcCCcE-EEEEEecCchhhcccccHHHHHHHH
Confidence 33433 589999887765322 1123678889999999999999885 43322 111223667899999
Q ss_pred HHHHHcCCcEEeccCc-ccccCHHHHHHHHHHHHHhC--CCCcceeEEEe-ecCCcchHHHHHHHHHHhCCCEE
Q 013498 241 GEVIKVGATTLNIPDT-VGITMPTEFGKLIADIKANT--PGIENVVISTH-CQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 241 ~~~~~~Gad~I~laDT-~G~~~P~~v~~li~~l~~~~--p~~~~v~i~~H-~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.+.++|+|.|-..-+ ....++.++.. ++.+.+.. |+.-.+.++== -+.++=-.+.-++..+++||+.+
T Consensus 153 ria~e~GaD~vKt~tg~~~~~t~~~~~~-~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~ 225 (236)
T PF01791_consen 153 RIAAELGADFVKTSTGKPVGATPEDVEL-MRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRI 225 (236)
T ss_dssp HHHHHTT-SEEEEE-SSSSCSHHHHHHH-HHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEE
T ss_pred HHHHHhCCCEEEecCCccccccHHHHHH-HHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhH
Confidence 9999999998877655 23444455444 44444322 21001222200 11222234666778889999775
No 372
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=85.78 E-value=27 Score=36.11 Aligned_cols=159 Identities=23% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee----------------ecccc
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG----------------LSRCN 161 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~----------------~~r~~ 161 (442)
...+.-++=...|.++|.+.+-+..| +.++.+.++.|.+.+... . .-+|-+.. -.|.|
T Consensus 28 ~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~-g---~~iPlVADIHFd~~lAl~a~~~v~kiRIN 101 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRAL-G---SPIPLVADIHFDYRLALEAIEAVDKIRIN 101 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCT-T----SS-EEEEESTTCHHHHHHHHC-SEEEE-
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccC-C---CCCCeeeecCCCHHHHHHHHHHhCeEEEC
Confidence 45566667778899999999999988 567788888888772110 0 00121111 11222
Q ss_pred ---------------hhhHHHHHHHHHhCCCC-EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc
Q 013498 162 ---------------ERDIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSP 225 (442)
Q Consensus 162 ---------------~~dI~~a~e~l~~~g~~-~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ 225 (442)
++.++..++..++.|++ ||.+--..-+-++..+++-+.+..++-+.+.++.+.++|+..+.+++
T Consensus 102 PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSl 181 (359)
T PF04551_consen 102 PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISL 181 (359)
T ss_dssp TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEE
T ss_pred CCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 23344445555556776 67776555566777778888999999999999999999998777776
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEeccCc-ccccCHHHH
Q 013498 226 EDAGRSDRKFLYEILGEVIKVGATTLNIPDT-VGITMPTEF 265 (442)
Q Consensus 226 edasr~d~~~l~~~~~~~~~~Gad~I~laDT-~G~~~P~~v 265 (442)
- -+|+....+..+.+.+.--.=+-|.-| .|....-.+
T Consensus 182 K---sSdv~~~i~ayr~la~~~dyPLHLGvTEAG~~~~g~I 219 (359)
T PF04551_consen 182 K---SSDVPETIEAYRLLAERMDYPLHLGVTEAGTGEDGTI 219 (359)
T ss_dssp E---BSSHHHHHHHHHHHHHH--S-EEEEBSSEESCHHHHH
T ss_pred E---eCChHHHHHHHHHHHHhcCCCeEEeecCCCCcccchh
Confidence 2 245555555544444321122444444 344433333
No 373
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.70 E-value=8.6 Score=38.57 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccC-cccccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laD-T~G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++++.|++.|+.--.|++ .+.+.+..+++.+.+.++.. |.+.- +...+-.+.+..++..+.++.+ +|
T Consensus 6 ~~~~l~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~----VP 76 (284)
T PRK12737 6 TKNMLKKAQAEGYAVPAFNI-----HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN----IP 76 (284)
T ss_pred HHHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45778889999985346666 45799999999999998764 44432 2233344567777777777663 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEecccccc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 318 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~GlG 318 (442)
+.+|. |-|.-......|+++|.+- +|+|-..+-
T Consensus 77 ValHL--DH~~~~e~i~~ai~~GftSVMiDgS~lp~e 111 (284)
T PRK12737 77 LALHL--DHHEDLDDIKKKVRAGIRSVMIDGSHLSFE 111 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHH
Confidence 77655 5566678999999999986 587765544
No 374
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.68 E-value=8.8 Score=38.62 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHcCCcEEeccCccccc-----C-----------------HHHHHHHHHHHHHhCCCCcceeEEEeec--C
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGIT-----M-----------------PTEFGKLIADIKANTPGIENVVISTHCQ--N 290 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~-----~-----------------P~~v~~li~~l~~~~p~~~~v~i~~H~H--N 290 (442)
.+.+.++.+.++|.|.|-|-=..|++ . +..+.++++.+++.++. +++|++-.+ +
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~--d~~i~vris~~~ 219 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP--DFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC--CceEEEEechhc
Confidence 34455566777899987774333331 1 23357888999998854 356666444 2
Q ss_pred ------CcchHHHHHHHHHHhCCCEEEecccc
Q 013498 291 ------DLGLSTANTIAGACAGARQVEVTING 316 (442)
Q Consensus 291 ------DlGLA~ANalaAl~aGa~~vd~Tv~G 316 (442)
+.--+..-+-...++|+++|+++-..
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 22223333445567899999988654
No 375
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=85.65 E-value=21 Score=34.49 Aligned_cols=175 Identities=19% Similarity=0.228 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
..|..+....++++-...|.++|++. ..| +.++...+. . . .| ||+-+ ..++.+-.+.++
T Consensus 22 nNFd~~~V~~i~~AA~~ggAt~vDIA---adp---~LV~~~~~~-s-------~-lP-ICVSa-Vep~~f~~aV~A---- 80 (242)
T PF04481_consen 22 NNFDAESVAAIVKAAEIGGATFVDIA---ADP---ELVKLAKSL-S-------N-LP-ICVSA-VEPELFVAAVKA---- 80 (242)
T ss_pred cccCHHHHHHHHHHHHccCCceEEec---CCH---HHHHHHHHh-C-------C-CC-eEeec-CCHHHHHHHHHh----
Confidence 46999999999999999999999994 344 455543332 1 1 13 33322 245555555554
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC-eEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD-DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~-~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la 254 (442)
|.+.|.+ .-.|.+-......+.+|++ ++.+..|++=.. ..+++.+ .-.+.+.=.+++..+.++|+|.|.=
T Consensus 81 GAdliEI--GNfDsFY~qGr~f~a~eVL----~Lt~~tR~LLP~~~LsVTVP--HiL~ld~Qv~LA~~L~~~GaDiIQT- 151 (242)
T PF04481_consen 81 GADLIEI--GNFDSFYAQGRRFSAEEVL----ALTRETRSLLPDITLSVTVP--HILPLDQQVQLAEDLVKAGADIIQT- 151 (242)
T ss_pred CCCEEEe--cchHHHHhcCCeecHHHHH----HHHHHHHHhCCCCceEEecC--ccccHHHHHHHHHHHHHhCCcEEEc-
Confidence 8887665 3333322222234556655 456666777322 1344443 3345677779999999999998853
Q ss_pred Cccccc--CH--HHHHHHH----------HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 255 DTVGIT--MP--TEFGKLI----------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 255 DT~G~~--~P--~~v~~li----------~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
-|.. .| ..+-.+| ..+-+.+ ++|+- | --|+.--.+=.|+.+||..|
T Consensus 152 --EGgtss~p~~~g~lglIekaapTLAaay~ISr~v----~iPVl--c--ASGlS~vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 152 --EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV----SIPVL--C--ASGLSAVTAPMAIAAGASGV 211 (242)
T ss_pred --CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc----CCceE--e--ccCcchhhHHHHHHcCCccc
Confidence 2221 11 0111111 1122233 24433 2 35777777788999998765
No 376
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=85.62 E-value=4.5 Score=40.68 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEeccCccc-----------ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 232 DRKFLYEILGEVIKVGATTLNIPDTVG-----------ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 232 d~~~l~~~~~~~~~~Gad~I~laDT~G-----------~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
+++.+.+.++...+.|++.|.+.-+-+ .+.++++.++++..++. ++++.+|++.+ ....
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-----g~~v~~H~~~~-----~~i~ 187 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-----GLYVAAHAYGA-----EAIR 187 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-----CCEEEEEeCCH-----HHHH
Confidence 456666666666677777665543321 46788888888888875 36788999865 3445
Q ss_pred HHHHhCCCEEE
Q 013498 301 AGACAGARQVE 311 (442)
Q Consensus 301 aAl~aGa~~vd 311 (442)
.++++|++.|+
T Consensus 188 ~~l~~G~~~i~ 198 (342)
T cd01299 188 RAIRAGVDTIE 198 (342)
T ss_pred HHHHcCCCEEe
Confidence 67788988763
No 377
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=85.59 E-value=11 Score=36.79 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE---EccC---CCCCCCHHHHHHHHH
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE---FSPE---DAGRSDRKFLYEILG 241 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~---f~~e---dasr~d~~~l~~~~~ 241 (442)
.+++++..|+.+|.+..|=.+ +.-...+++..+.|++.+. |+.+ +..+.+++.+.+.++
T Consensus 111 ~~~AL~alg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~ 175 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAAL 175 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHH
Confidence 344455569999999877443 2233567788889997333 3443 366899999999999
Q ss_pred HHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC
Q 013498 242 EVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP 277 (442)
Q Consensus 242 ~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p 277 (442)
.+...++|.|.++.|. -.+.+++..+-+.++
T Consensus 176 ~~~~~~aDAifisCTn-----Lrt~~vi~~lE~~lG 206 (239)
T TIGR02990 176 AAFDPDADALFLSCTA-----LRAATCAQRIEQAIG 206 (239)
T ss_pred HhcCCCCCEEEEeCCC-----chhHHHHHHHHHHHC
Confidence 9988899999998665 456677888877764
No 378
>PRK09875 putative hydrolase; Provisional
Probab=85.40 E-value=43 Score=33.67 Aligned_cols=148 Identities=13% Similarity=0.132 Sum_probs=78.8
Q ss_pred HHHHHHHHhHcCC--CEE-EEccC--CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 103 KLDIARQLAKLGV--DII-EAGFP--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 103 kl~ia~~L~~~GV--~~I-EvG~p--~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
..+|-+.++..|| -.| |+|.- ...+.+.+.++..++....+ +. | |..++.......+. ++.+++.|+
T Consensus 106 i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~T-----G~-p-i~~Ht~~~~~g~e~-l~il~e~Gv 177 (292)
T PRK09875 106 VDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQT-----GR-P-ISTHTSFSTMGLEQ-LALLQAHGV 177 (292)
T ss_pred HHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHH-----CC-c-EEEcCCCccchHHH-HHHHHHcCc
Confidence 3445555664444 248 99863 35777777777766543221 22 3 33333222122332 455566687
Q ss_pred C--EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-CCCCCCHHHHHHHHHHHHHcC-CcEEec
Q 013498 178 P--RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVG-ATTLNI 253 (442)
Q Consensus 178 ~--~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-dasr~d~~~l~~~~~~~~~~G-ad~I~l 253 (442)
+ +|.+- |+. ...+.+ ..+.+.+.|+ +++|..- -....+.+...+.++.+.+.| +|+|.|
T Consensus 178 d~~rvvi~------H~d--~~~d~~--------~~~~l~~~G~-~l~fD~~g~~~~~pd~~r~~~i~~L~~~Gy~drilL 240 (292)
T PRK09875 178 DLSRVTVG------HCD--LKDNLD--------NILKMIDLGA-YVQFDTIGKNSYYPDEKRIAMLHALRDRGLLNRVML 240 (292)
T ss_pred CcceEEEe------CCC--CCCCHH--------HHHHHHHcCC-EEEeccCCCcccCCHHHHHHHHHHHHhcCCCCeEEE
Confidence 4 55432 221 122322 2333456888 6888431 112234456788999999999 999988
Q ss_pred cCcccccCH----------HHHHHHHHHHHHh
Q 013498 254 PDTVGITMP----------TEFGKLIADIKAN 275 (442)
Q Consensus 254 aDT~G~~~P----------~~v~~li~~l~~~ 275 (442)
+=-.|.-.+ .-+.+++..|++.
T Consensus 241 S~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~ 272 (292)
T PRK09875 241 SMDITRRSHLKANGGYGYDYLLTTFIPQLRQS 272 (292)
T ss_pred eCCCCCcccccccCCCChhHHHHHHHHHHHHc
Confidence 633343322 4456666666654
No 379
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=85.16 E-value=12 Score=39.10 Aligned_cols=130 Identities=12% Similarity=0.085 Sum_probs=78.2
Q ss_pred CCCEEEEc--cCCCC-hhHH-HHHHHHHHHhcccccccCCccceEeeecccchhhHH-HHHHHHHhCCCCEEEEeecCCh
Q 013498 114 GVDIIEAG--FPAAS-KEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATSG 188 (442)
Q Consensus 114 GV~~IEvG--~p~~~-~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~e~l~~~g~~~v~i~~~~Sd 188 (442)
+++.|-+| -|... ++.. +.++.+.+..+.. .+ ..++.- ++++.+. .-++.++.+|+.+|.+=+=..+
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~--~~----~eit~E--~~P~~lt~e~l~~l~~~GvnrislGvQS~~ 137 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIA--PD----AEISLE--IDPGTFDLEQLQGYRSLGVNRVSLGVQAFQ 137 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--CC----CEEEEE--eCCCcCCHHHHHHHHHCCCCEEEEEcccCC
Confidence 57777775 46543 3333 3444454432211 00 123332 2344442 2355667789999988665555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 189 ~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
-.....+|+.. ..+.+.++++.+++.|++.|.+.+..+ .--+.+.+.+.++.+.+.+++.|.+
T Consensus 138 d~~L~~l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 138 DELLALCGRSH--RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred HHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 56767777632 234566788899999986455544332 2246678888999999999998765
No 380
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=85.09 E-value=7.9 Score=36.71 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcc-----cccCHHHHHHHHHHHHHhCCC
Q 013498 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTV-----GITMPTEFGKLIADIKANTPG 278 (442)
Q Consensus 204 ~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~-----G~~~P~~v~~li~~l~~~~p~ 278 (442)
+...+.++++|+.|++ +.+.+ -.-++.+.+..+++. +|.+- .=|+ |--.-+++-.-|++||+++|.
T Consensus 99 q~~~~lv~~ir~~Gmk-~G~al--kPgT~Ve~~~~~~~~-----~D~vL-vMtVePGFGGQkFme~mm~KV~~lR~kyp~ 169 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMK-VGLAL--KPGTPVEDLEPLAEH-----VDMVL-VMTVEPGFGGQKFMEDMMPKVEWLREKYPN 169 (224)
T ss_pred cCHHHHHHHHHHcCCe-eeEEe--CCCCcHHHHHHhhcc-----ccEEE-EEEecCCCchhhhHHHHHHHHHHHHHhCCC
Confidence 3355789999999985 55544 234566666655542 23221 1222 223334455667889999985
Q ss_pred CcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHh
Q 013498 279 IENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC 335 (442)
Q Consensus 279 ~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~ 335 (442)
..|++ |-|+...|.-.+.+|||+.+=+.-.=+ |-.+-.+++..|+.
T Consensus 170 ---l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf----~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 170 ---LDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF----GAADPSDVISLLRN 215 (224)
T ss_pred ---ceEEe----cCCcCcchHHHHHHcCCCEEEecceee----cCCCHHHHHHHHHH
Confidence 44554 789999999999999999973322111 33456677666653
No 381
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=84.96 E-value=62 Score=35.83 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCCceEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCc-cceE
Q 013498 76 DPNYVRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGY-VPVI 154 (442)
Q Consensus 76 ~~~~V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l-~~~i 154 (442)
-.+.|.+--.|-=| ....+.-++=+..|.++|.+++-+..| +.++.+.++.|.+.+... ++ +|-+
T Consensus 23 g~~PI~vQSMt~t~-------T~D~~atv~Qi~~l~~aGceiVRvtv~--~~~~a~~l~~I~~~l~~~-----G~~iPLV 88 (611)
T PRK02048 23 GPNPIRIQSMTNTS-------TMDTEACVAQAKRIIDAGGEYVRLTTQ--GVREAENLMNINIGLRSQ-----GYMVPLV 88 (611)
T ss_pred CCCceEEEecCCCC-------cccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhhc-----CCCCCEE
Confidence 33446665554322 345666677788899999999999887 456777777777663110 00 1111
Q ss_pred ee----------------ecccch----------------------------hhHHHHHHHHHhCCCC-EEEEeecCChH
Q 013498 155 CG----------------LSRCNE----------------------------RDIKTAWEAVKYAKRP-RIHTFIATSGI 189 (442)
Q Consensus 155 ~~----------------~~r~~~----------------------------~dI~~a~e~l~~~g~~-~v~i~~~~Sd~ 189 (442)
+. -.|.|+ +.+...++.-++.|++ ||.+--..-+-
T Consensus 89 ADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~ 168 (611)
T PRK02048 89 ADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSD 168 (611)
T ss_pred EecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchH
Confidence 10 011111 1222334445566776 67664333345
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC-CCCHHHHHHHHHHHHHcCC
Q 013498 190 HMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG-RSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 190 h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas-r~d~~~l~~~~~~~~~~Ga 248 (442)
.+..++|-|++..++-+.+.++.+.++|+..+.|++-... .....-+..++..+.+.|.
T Consensus 169 ~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~ 228 (611)
T PRK02048 169 RIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGM 228 (611)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCC
Confidence 6667888899999999999999999999987888873221 1122333344455544443
No 382
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=84.94 E-value=31 Score=34.14 Aligned_cols=80 Identities=15% Similarity=0.001 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccce--Ee-ee-cccchhhHHHHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPV--IC-GL-SRCNERDIKTAWEAVK 173 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~--i~-~~-~r~~~~dI~~a~e~l~ 173 (442)
++.+-+....+...++|++.|-+..|.+. .+.++...+..++. ++... ++ .+ .|.+.+.+....+.+.
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---~~~~~~~i~~ak~~-----G~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 159 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---VRNLEVAIKAVKKA-----GKHVEGAICYTGSPVHTLEYYVKLAKELE 159 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---HHHHHHHHHHHHHC-----CCeEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 45556777788888889999888777442 22222222222111 22111 11 11 3555666655556666
Q ss_pred hCCCCEEEEeec
Q 013498 174 YAKRPRIHTFIA 185 (442)
Q Consensus 174 ~~g~~~v~i~~~ 185 (442)
.+|+++|.+..+
T Consensus 160 ~~Ga~~i~l~DT 171 (275)
T cd07937 160 DMGADSICIKDM 171 (275)
T ss_pred HcCCCEEEEcCC
Confidence 678887766544
No 383
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=84.92 E-value=13 Score=36.95 Aligned_cols=97 Identities=11% Similarity=-0.036 Sum_probs=59.8
Q ss_pred HhCCCCEEEEeecCChHHHHHHh------CCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHH-
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKL------RKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIK- 245 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l------~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~- 245 (442)
..+|++.|.+- .|- .-..+ ..|.++.+..++...+-++. ..|...++..+..+++...+-+.++.+
T Consensus 32 ~~aG~d~ilvG--dSl--gm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~vv~DmPf~sy~~~e~a~~na~rl~~e 104 (263)
T TIGR00222 32 ADAGVDVILVG--DSL--GMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLIVTDLPFMSYATPEQALKNAARVMQE 104 (263)
T ss_pred HHcCCCEEEEC--ccH--hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceEEeCCCcCCCCCHHHHHHHHHHHHHH
Confidence 34688876532 221 11223 35677777666555443332 235556666666678887777776665
Q ss_pred cCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 013498 246 VGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (442)
Q Consensus 246 ~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H 287 (442)
.|++.|.|-|. .++.++|+.+.+. .+++--|
T Consensus 105 aGa~aVkiEgg------~~~~~~i~~l~~~-----gIpV~gH 135 (263)
T TIGR00222 105 TGANAVKLEGG------EWLVETVQMLTER-----GVPVVGH 135 (263)
T ss_pred hCCeEEEEcCc------HhHHHHHHHHHHC-----CCCEEEe
Confidence 99999999996 4566777777664 2556644
No 384
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=84.91 E-value=9.9 Score=38.60 Aligned_cols=84 Identities=25% Similarity=0.364 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCcEEeccC-cccccCHHHHHHHH--------HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH-
Q 013498 235 FLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC- 304 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laD-T~G~~~P~~v~~li--------~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~- 304 (442)
.+.++++...++|++.+.+.| +.+.+.|+++.+++ +.+++..++ .++-.||.+ .. +.+..+.
T Consensus 181 ~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~---~~ilh~cg~-~~----~~~~~~~~ 252 (338)
T TIGR01464 181 ATIEYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPN---VPVILFAKG-AG----HLLEELAE 252 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEeCC-cH----HHHHHHHh
Confidence 455666667788999999999 66888998886555 344443232 345334443 22 3444444
Q ss_pred hCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 305 AGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 305 aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
.|++.++.-- +.++.++...+.
T Consensus 253 ~~~~~~s~d~--------~~dl~e~~~~~~ 274 (338)
T TIGR01464 253 TGADVVGLDW--------TVDLKEARKRVG 274 (338)
T ss_pred cCCCEEEeCC--------CCCHHHHHHHhC
Confidence 4887763322 156666554444
No 385
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=84.74 E-value=49 Score=33.67 Aligned_cols=164 Identities=10% Similarity=0.101 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHhH-cCCCEEEE--ccCCCChhH-H-HHHHHHHHHhcccccccCCccceEeee--cccchhhHHHHH
Q 013498 97 TLTSKEKLDIARQLAK-LGVDIIEA--GFPAASKED-F-EAVRTIAKEVGNAVDAESGYVPVICGL--SRCNERDIKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~-~GV~~IEv--G~p~~~~~d-~-e~v~~l~~~~~~~~~~~~~l~~~i~~~--~r~~~~dI~~a~ 169 (442)
.++.++-.++.+.+.+ .||..|=+ |-|-..++. + +.++.+... +. +... ++..++.+. .|.+. ..+
T Consensus 124 ~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i-~~-~~~i-ri~tr~~~~~p~rit~----el~ 196 (321)
T TIGR03821 124 QPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQI-PH-LKRL-RIHTRLPVVIPDRITS----GLC 196 (321)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHhC-CC-CcEE-EEecCcceeeHHHhhH----HHH
Confidence 4677777787777774 48876655 346544432 2 334333321 11 0000 111000011 12222 223
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC--CCCCCCHHHHHHHHHHHHHcC
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE--DAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--dasr~d~~~l~~~~~~~~~~G 247 (442)
+.++..|...+. .++.+ |. .|.-+.+.++++.+++.|+. |..... ..-.-+.+.+.++.+.+.+.|
T Consensus 197 ~~L~~~~~~~~~-~~h~d--h~--------~Ei~d~~~~ai~~L~~~Gi~-v~~qtvllkgiNDn~~~l~~L~~~l~~~g 264 (321)
T TIGR03821 197 DLLANSRLQTVL-VVHIN--HA--------NEIDAEVADALAKLRNAGIT-LLNQSVLLRGVNDNADTLAALSERLFDAG 264 (321)
T ss_pred HHHHhcCCcEEE-EeeCC--Ch--------HhCcHHHHHHHHHHHHcCCE-EEecceeeCCCCCCHHHHHHHHHHHHHcC
Confidence 445556665442 22222 11 12235577899999999985 544331 122337889999999999999
Q ss_pred CcEEec--cCcccc-----cCHHHHHHHHHHHHHhCCCC
Q 013498 248 ATTLNI--PDTVGI-----TMPTEFGKLIADIKANTPGI 279 (442)
Q Consensus 248 ad~I~l--aDT~G~-----~~P~~v~~li~~l~~~~p~~ 279 (442)
+...++ +|-+|. ..+++..++++.+++.+++.
T Consensus 265 v~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG~ 303 (321)
T TIGR03821 265 VLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPGY 303 (321)
T ss_pred CeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCCC
Confidence 986554 666664 57788999999999998764
No 386
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=84.73 E-value=23 Score=36.75 Aligned_cols=135 Identities=17% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHhCCCCEEEEeecCCh----------HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccC---CC---C
Q 013498 170 EAVKYAKRPRIHTFIATSG----------IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPE---DA---G 229 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd----------~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~e---da---s 229 (442)
+..+.+|.|.|.+..+-.- -+...++|-+.+.-.+-+.+.++.+|+. |-+ .|.++.+ +. .
T Consensus 151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence 3456689999988755421 1233456777888888888888888886 432 2456652 11 1
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcccc-cCHH---HHHHHHHHHHHhCCCCcceeEEEeecCCcc------------
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGI-TMPT---EFGKLIADIKANTPGIENVVISTHCQNDLG------------ 293 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~G~-~~P~---~v~~li~~l~~~~p~~~~v~i~~H~HNDlG------------ 293 (442)
-.+++...++++.+.++|+|.|.+.- |. ..|. .-..+...+++.++ ++|....--+..
T Consensus 231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~----~pv~~~G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTG----LPTITVGSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcC----CCEEEECCcccccccccccccccc
Confidence 25678888999999999999987732 31 1221 12345566777663 455554432100
Q ss_pred ---hHHHHHHHHHHhC-CCEE
Q 013498 294 ---LSTANTIAGACAG-ARQV 310 (442)
Q Consensus 294 ---LA~ANalaAl~aG-a~~v 310 (442)
.....+..+++.| ||.|
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V 325 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLV 325 (361)
T ss_pred cccCCHHHHHHHHHCCCCCee
Confidence 1335566777766 6665
No 387
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=84.67 E-value=7.8 Score=37.85 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=86.5
Q ss_pred HHHHHhHcC--CCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEee-e-c-c-cchhhHHHHHHHHHhCCCCE
Q 013498 106 IARQLAKLG--VDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICG-L-S-R-CNERDIKTAWEAVKYAKRPR 179 (442)
Q Consensus 106 ia~~L~~~G--V~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~-~-~-r-~~~~dI~~a~e~l~~~g~~~ 179 (442)
+-+.|.-+| ||.+=+|+..+.-.+.+.+++..+..... + +....| + . . ....-++.-++..+..|.+.
T Consensus 14 ~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~-----~-V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~ 87 (237)
T TIGR03849 14 VEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDY-----G-IKVYPGGTLFEIAHSKGKFDEYLNECDELGFEA 87 (237)
T ss_pred HHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHc-----C-CeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCE
Confidence 344445555 78888888654333333555544432110 0 111111 0 0 0 01234555555667779999
Q ss_pred EEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCC---CCCCCHHHHHHHHHHHHHcCCcEE----
Q 013498 180 IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPED---AGRSDRKFLYEILGEVIKVGATTL---- 251 (442)
Q Consensus 180 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~ed---asr~d~~~l~~~~~~~~~~Gad~I---- 251 (442)
|.++...-+ ++.+ .-.++|+.+++.|+.. .+++.-+ ....+++...+.++...++||+.|
T Consensus 88 IEiS~G~~~--------i~~~----~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 88 VEISDGSME--------ISLE----ERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred EEEcCCccC--------CCHH----HHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 998765433 3333 3457899999999851 2444322 335678889999999999999854
Q ss_pred -------eccCcccccCHHHHHHHHHH
Q 013498 252 -------NIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 252 -------~laDT~G~~~P~~v~~li~~ 271 (442)
.|+|..|......+.++++.
T Consensus 156 rEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 156 RESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred hhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 56666777777666666653
No 388
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=84.53 E-value=8.1 Score=39.69 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccc-cCHHHHHHHHHHHHHhCCCCcceeEEEee---------cCCcchHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGI-TMPTEFGKLIADIKANTPGIENVVISTHC---------QNDLGLSTAN 298 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~-~~P~~v~~li~~l~~~~p~~~~v~i~~H~---------HNDlGLA~AN 298 (442)
.+.+++++.+.++.+.+.|+++|.|.+.... ...+.+.++++.+++.+|+ +.+|+ =+-.|+-...
T Consensus 77 y~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~-----i~i~~~~~~ei~~~~~~~g~~~~e 151 (351)
T TIGR03700 77 YAMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD-----LHVKAFTAVEIHHFSKISGLPTEE 151 (351)
T ss_pred CCCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC-----ceEEeCCHHHHHHHHHHcCCCHHH
Confidence 3468899999999888899999998743322 2336788999999998875 33443 1346777777
Q ss_pred HHHHH-HhCCCEEE
Q 013498 299 TIAGA-CAGARQVE 311 (442)
Q Consensus 299 alaAl-~aGa~~vd 311 (442)
.+..+ +||++.+.
T Consensus 152 ~l~~LkeAGld~~~ 165 (351)
T TIGR03700 152 VLDELKEAGLDSMP 165 (351)
T ss_pred HHHHHHHcCCCcCC
Confidence 66655 47998876
No 389
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=84.52 E-value=15 Score=35.30 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-----CC-----CC
Q 013498 163 RDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-----GR-----SD 232 (442)
Q Consensus 163 ~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-----sr-----~d 232 (442)
-+++.+++.++++|.+.|.+..+. ..+ +.++.+.+++.|++.+.++.... .+ .+
T Consensus 14 ~~l~e~~~~~~e~G~~~vEl~~~~---------~~~-------~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~ 77 (254)
T TIGR03234 14 LPFLERFAAAAQAGFTGVEYLFPY---------DWD-------AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPG 77 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEecCCc---------cCC-------HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCc
Confidence 367777888888899999886532 112 23344566789986334432110 00 11
Q ss_pred -----HHHHHHHHHHHHHcCCcEEeccCcc--cccCHHH-HHHHHHHHHHh---CCCCcceeEEEeecCC
Q 013498 233 -----RKFLYEILGEVIKVGATTLNIPDTV--GITMPTE-FGKLIADIKAN---TPGIENVVISTHCQND 291 (442)
Q Consensus 233 -----~~~l~~~~~~~~~~Gad~I~laDT~--G~~~P~~-v~~li~~l~~~---~p~~~~v~i~~H~HND 291 (442)
.+.+.+.++.+.+.|+..|.+.-.. +....++ ...+++.+++. ... .++.|.++.||.
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~gi~l~lE~~~~ 146 (254)
T TIGR03234 78 REEEFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDR-IGLTLLIEPINS 146 (254)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCEEEEEECCc
Confidence 2566677888889999998874211 1112233 23333333322 111 147788888864
No 390
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=84.48 E-value=27 Score=35.52 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEc--cCCCCh-----hH----HHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAG--FPAASK-----ED----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG--~p~~~~-----~d----~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
.+.++-.++++.+.++|+|.||+- .|...+ +. ++.++.+.+.. -.|.+.=+ +....++.
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~---------~iPV~vKl-~p~~~~~~ 180 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV---------SIPVAVKL-SPYFSNLA 180 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc---------CCcEEEEe-CCCchhHH
Confidence 467888999999999999999994 221111 11 23344444321 12433322 23444566
Q ss_pred HHHHHHHhCCCCEEEEeecCCh--HHHHH-----HhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHHHH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSG--IHMEH-----KLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYE 238 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd--~h~~~-----~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l~~ 238 (442)
...+.+..+|++.|.+...... +..+. ..+.+-...+..+.+.+..+++. .+. |.- .++=.+.+.+.+
T Consensus 181 ~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip-Iig---~GGI~s~~Da~e 256 (334)
T PRK07565 181 NMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD-LAA---TTGVHDAEDVIK 256 (334)
T ss_pred HHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC-EEE---ECCCCCHHHHHH
Confidence 6666677789998876544311 11110 12233344455566667766654 343 221 234455565555
Q ss_pred HHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhC
Q 013498 239 ILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 239 ~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
++ .+||+.|.++=.+=.--|.-+.++++.|++.+
T Consensus 257 ~l----~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l 290 (334)
T PRK07565 257 ML----LAGADVVMIASALLRHGPDYIGTILRGLEDWM 290 (334)
T ss_pred HH----HcCCCceeeehHHhhhCcHHHHHHHHHHHHHH
Confidence 44 38999988873221112666777777776553
No 391
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.47 E-value=15 Score=36.90 Aligned_cols=130 Identities=13% Similarity=0.116 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhCC
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTP 277 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~p 277 (442)
..++++.+. +.. +.+. .+|-....+..+.+.++..| ..|+.|.|++.+-.=+ .+.+.++.+++..|
T Consensus 125 t~~~v~~~~--~~~-~~i~---~TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~ 198 (289)
T PRK07896 125 TAAWVDAVA--GTK-AKIR---DTRKTLPGLRALQKYAVRCGGGVNHRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAP 198 (289)
T ss_pred HHHHHHHhc--CCC-eEEE---ecCCCCCcchHHHHHHHHhCCCccccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCC
Confidence 344555553 332 4443 35555556777777777775 3688888887653322 56788888898877
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHh---ccccccCCccCCCChhHHH
Q 013498 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKC---RGEHILGGLYTGINTRHIV 354 (442)
Q Consensus 278 ~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~---~g~~~~~G~~tgidl~~L~ 354 (442)
. .+|++-+.+ +.-+.+|+++|++.|-.= |-+.|++-..+.. .+.+......-||+++.+.
T Consensus 199 ~---~kIeVEv~t-----l~ea~eal~~gaDiI~LD---------nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~ 261 (289)
T PRK07896 199 D---LPCEVEVDS-----LEQLDEVLAEGAELVLLD---------NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAA 261 (289)
T ss_pred C---CCEEEEcCC-----HHHHHHHHHcCCCEEEeC---------CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHH
Confidence 5 334444543 446688899999998544 7888888877754 2222222345689999998
Q ss_pred HHHH
Q 013498 355 MASK 358 (442)
Q Consensus 355 ~ls~ 358 (442)
+.+.
T Consensus 262 ~yA~ 265 (289)
T PRK07896 262 AYAE 265 (289)
T ss_pred HHHh
Confidence 8764
No 392
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=84.47 E-value=13 Score=37.47 Aligned_cols=101 Identities=13% Similarity=0.076 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEe-ccCc-ccccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLN-IPDT-VGITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~-laDT-~G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++++.|++.|+..-.|++ .+.+.+..+++.+.+.+...|. +... .-.+..+.+..++..+.++.. +|
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~----VP 76 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNI-----HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN----MP 76 (286)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45778889999985446766 4578999999999999876544 3322 223445667788888877763 77
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEeccccc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 317 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~Gl 317 (442)
|.+|. |-|........|+++|.+- +|+|-..+
T Consensus 77 ValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ 110 (286)
T PRK12738 77 LALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPF 110 (286)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCCCH
Confidence 77654 6666788899999999976 57765443
No 393
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=84.40 E-value=45 Score=33.02 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCC--CChhHHH----HHHHHHHHhcccccccCCccceEeeecccchhh-HHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPA--ASKEDFE----AVRTIAKEVGNAVDAESGYVPVICGLSRCNERD-IKTAW 169 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~--~~~~d~e----~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~d-I~~a~ 169 (442)
.-+++.|+.=++...+.|.++|++=.+. ....+++ .++.+.+..... ..+-+|.=-+..+.++ |..+.
T Consensus 79 ~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~-----~~lKVIlEt~~L~~ee~i~~a~ 153 (257)
T PRK05283 79 NDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAAN-----VLLKVIIETGELKDEALIRKAS 153 (257)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCC-----ceEEEEEeccccCCHHHHHHHH
Confidence 3578999999999999999999985431 1122343 444444432210 1122343333445553 77777
Q ss_pred HHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-CeEEEccCCCCCCCHHHHHHHHHHHHHc-C
Q 013498 170 EAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC-DDVEFSPEDAGRSDRKFLYEILGEVIKV-G 247 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~-~~V~f~~edasr~d~~~l~~~~~~~~~~-G 247 (442)
+....+|.+.|.+...-+. -+-|.+. ++.++ +.+++.|. ..|.+-. .++=.+.+...++++...+. |
T Consensus 154 ~~a~~aGADFVKTSTGf~~------~gAt~ed-v~lm~---~~i~~~~~~~~vgIKA-sGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 154 EIAIKAGADFIKTSTGKVP------VNATLEA-ARIML---EVIRDMGVAKTVGFKP-AGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred HHHHHhCCCEEEcCCCCCC------CCCCHHH-HHHHH---HHHHhcccCCCeeEEc-cCCCCCHHHHHHHHHHHHHHhC
Confidence 7777789998887554321 1334433 23333 33343321 1244433 34445567777777776653 7
Q ss_pred CcEEeccCcccccCHHHHHHHHHHH
Q 013498 248 ATTLNIPDTVGITMPTEFGKLIADI 272 (442)
Q Consensus 248 ad~I~laDT~G~~~P~~v~~li~~l 272 (442)
.+++. ++++=+..-.-..++...+
T Consensus 223 ~~~~~-~~~fR~G~Ssll~~~~~~~ 246 (257)
T PRK05283 223 ADWAD-ARHFRFGASSLLASLLKTL 246 (257)
T ss_pred hhhcC-cccEeeehHHhHHHHHHHH
Confidence 77776 6666554444444444433
No 394
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=84.31 E-value=6 Score=42.14 Aligned_cols=71 Identities=24% Similarity=0.203 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
+..+-++.+.++|+|.|.+--+-| .-..+.+.|+.+++.+|+ ++|.+ -..+-...+..++++||+.|.+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~---~~vi~----G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPD---LDIIA----GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCC---CCEEE----EeCCCHHHHHHHHHhCCCEEEECC
Confidence 344566688899999988833344 224688899999999885 55665 345556678899999999999865
No 395
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.29 E-value=16 Score=36.37 Aligned_cols=132 Identities=21% Similarity=0.253 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCH-----HHHHHHHHHHHHhC
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMP-----TEFGKLIADIKANT 276 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P-----~~v~~li~~l~~~~ 276 (442)
...++++.+++.+ +.+. .+|-+.-.+..+.+.++..| ..|+.|.|++.+-.= ..+.+.++.+|+.+
T Consensus 106 ~t~~~v~~~~~~~---~~i~---~TRKt~Pg~r~~~k~Av~~GGg~~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~ 179 (273)
T PRK05848 106 LTSRYVEALESHK---VKLL---DTRKTRPLLRIFEKYSVRNGGASNHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNI 179 (273)
T ss_pred HHHHHHHHhcCCC---eEEE---ecCCCCcchhHHHHHHHHhCCCccccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhC
Confidence 3456666665432 4442 25666666777777777765 368999999876433 35788999999998
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhcc---ccccCCccCCCChhHH
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRG---EHILGGLYTGINTRHI 353 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g---~~~~~G~~tgidl~~L 353 (442)
|.. .+|.+=+.| +.-++.|+++|+|.|- -=|.+.|++....+... ........-||+++.+
T Consensus 180 p~~--~~I~VEv~t-----leea~~A~~~GaDiI~---------LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni 243 (273)
T PRK05848 180 PFT--AKIEIECES-----LEEAKNAMNAGADIVM---------CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENI 243 (273)
T ss_pred CCC--ceEEEEeCC-----HHHHHHHHHcCCCEEE---------ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHH
Confidence 842 345555554 5567889999999986 24557777777666422 1111123457899998
Q ss_pred HHHHH
Q 013498 354 VMASK 358 (442)
Q Consensus 354 ~~ls~ 358 (442)
.+.++
T Consensus 244 ~~ya~ 248 (273)
T PRK05848 244 NAYAK 248 (273)
T ss_pred HHHHH
Confidence 77763
No 396
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=84.27 E-value=32 Score=35.00 Aligned_cols=166 Identities=21% Similarity=0.197 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHHhHcC-CCEEEEc--cCCCC-----hhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHH
Q 013498 97 TLTSKEKLDIARQLAKLG-VDIIEAG--FPAAS-----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTA 168 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~G-V~~IEvG--~p~~~-----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a 168 (442)
.-+.++..+++..+.++| .|+||+= .|... .++.|.+..+.+.++.. .-+|.+.-++. +.+||...
T Consensus 105 ~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-----~~~Pv~vKl~P-~~~di~~i 178 (310)
T COG0167 105 GPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-----TKVPVFVKLAP-NITDIDEI 178 (310)
T ss_pred CCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-----ccCceEEEeCC-CHHHHHHH
Confidence 345888999999999999 9999994 45321 12556777776665442 12577777776 78899888
Q ss_pred HHHHHhCCCCEEEEeecCC---hHHHHH--------HhCCCHHHHHHHHHHHHHHHHHc-C--CCeEEEccCCCCCCCHH
Q 013498 169 WEAVKYAKRPRIHTFIATS---GIHMEH--------KLRKTKQQVVEIARSMVKFARSL-G--CDDVEFSPEDAGRSDRK 234 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~S---d~h~~~--------~l~~s~~e~l~~~~~~v~~ar~~-G--~~~V~f~~edasr~d~~ 234 (442)
.+++.++|.|.|.....+- .+-... .=|.|=..+...+.++|+..+.. + +.-+.++ +=.+.+
T Consensus 179 A~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvG----GI~s~~ 254 (310)
T COG0167 179 AKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVG----GIETGE 254 (310)
T ss_pred HHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEec----CcCcHH
Confidence 8888889999876654332 111211 11345566677777777765554 4 3222332 334444
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhC
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
...+.+ .+||+.+.+.-..=.--|.-+.++++.|.+.+
T Consensus 255 DA~E~i----~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l 292 (310)
T COG0167 255 DALEFI----LAGASAVQVGTALIYKGPGIVKEIIKGLARWL 292 (310)
T ss_pred HHHHHH----HcCCchheeeeeeeeeCchHHHHHHHHHHHHH
Confidence 443333 58999888877665555777777776665543
No 397
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=84.22 E-value=18 Score=37.71 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=71.1
Q ss_pred EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHH
Q 013498 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANT 299 (442)
Q Consensus 221 V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-ANa 299 (442)
.-|++-. +-.+++.-.+-++.+.+.+.+.+.|.=++|- ..+++.+++......+|. +.|.-+ +|.+. ..-
T Consensus 199 ~lfgiVQ-GG~~~dLR~~Sa~~l~~~~~~GyaIGG~vge-~~~~~~~il~~~~~~LP~--~kPRyL-----mGvG~P~di 269 (372)
T PRK01008 199 SMYGVIH-GGIDPDQRKIGCKFVEDLPFDGSAIGGSLGK-NLQEMVEVVGVTTSNLSK--ERPVHL-----LGIGDLPSI 269 (372)
T ss_pred eEEEEec-CCCCHHHHHHHHHHHHhCCCCEEEECCCCCC-CHHHHHHHHHHHHhhCCC--CCCeEE-----ecCCCHHHH
Confidence 4555533 3456677777888899999999999887774 778999999999999985 345433 45554 578
Q ss_pred HHHHHhCCCEEEecccccccccCcc
Q 013498 300 IAGACAGARQVEVTINGIGERAGNA 324 (442)
Q Consensus 300 laAl~aGa~~vd~Tv~GlGeraGNa 324 (442)
+.|+..|+|.+|++.-=-=.|-|.+
T Consensus 270 ~~~V~~GvD~FDcv~Ptr~AR~G~~ 294 (372)
T PRK01008 270 WATVGFGIDSFDSSYPTKAARHGLI 294 (372)
T ss_pred HHHHHhCCCeeeeccchhhhcCCEE
Confidence 8999999999999887555566654
No 398
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=84.17 E-value=5.9 Score=34.02 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=43.6
Q ss_pred HHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeec
Q 013498 210 VKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQ 289 (442)
Q Consensus 210 v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~H 289 (442)
++.+++.|++.|.-.-.|.-..+.-...++.+.+.++|...++++=+.|-.+++.+..+.+.+.+ .|+ ||-+||.
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~----Pvl~hC~ 94 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK----PVLAHCR 94 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT----SEEEE-S
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC----CEEEECC
Confidence 45677899974332222322222223445667888899999999999999999999998877776 453 6888887
Q ss_pred CCc
Q 013498 290 NDL 292 (442)
Q Consensus 290 NDl 292 (442)
...
T Consensus 95 sG~ 97 (110)
T PF04273_consen 95 SGT 97 (110)
T ss_dssp CSH
T ss_pred CCh
Confidence 543
No 399
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=84.01 E-value=38 Score=32.92 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=114.6
Q ss_pred eEEEeCCCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecc
Q 013498 80 VRVFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR 159 (442)
Q Consensus 80 V~I~DtTLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r 159 (442)
..++|-|+ ..-..|.++..++.+.-.+-|+..+.+ +|...+.- ++.+..+ . . ..+..+.+|--
T Consensus 9 ~~~IDhT~------Lk~~~T~~~I~~l~~eA~~~~f~avCV-~P~~V~~A-------~~~l~g~-~-~-~~v~tVigFP~ 71 (228)
T COG0274 9 AKLIDHTL------LKPDATEEDIARLCAEAKEYGFAAVCV-NPSYVPLA-------KEALKGS-T-V-VRVCTVIGFPL 71 (228)
T ss_pred HHHhhhhc------CCCCCCHHHHHHHHHHHHhhCceEEEE-CcchHHHH-------HHHhccC-C-C-eEEEEecCCCC
Confidence 34566665 345678999999999999999999998 67654422 2222211 0 0 01222333321
Q ss_pred -cchhhHH--HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHH
Q 013498 160 -CNERDIK--TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFL 236 (442)
Q Consensus 160 -~~~~dI~--~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l 236 (442)
.+...++ .+.++ .+.|.+.|.+.++... -....++.+.+.+...++.+.+. . .+-+-.|.. ..+.+..
T Consensus 72 G~~~t~~K~~Ea~~a-i~~GAdEiDmVinig~-----~k~g~~~~V~~eI~~v~~a~~~~-~-~lKVIlEt~-~Lt~ee~ 142 (228)
T COG0274 72 GANTTAVKAAEAREA-IENGADEIDMVINIGA-----LKSGNWEAVEREIRAVVEACADA-V-VLKVILETG-LLTDEEK 142 (228)
T ss_pred CCChHHHHHHHHHHH-HHcCCCeeeeeeeHHH-----HhcCCHHHHHHHHHHHHHHhCCC-c-eEEEEEecc-ccCHHHH
Confidence 1222221 22222 2359999999887542 23456788888888888887775 2 244555544 4444666
Q ss_pred HHHHHHHHHcCCcEEeccC--cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 237 YEILGEVIKVGATTLNIPD--TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laD--T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
.+.++.+.++|+|.|-=.- +.|-++++.+.-+.+.+... +++-.----.- ..-+++-+++|+.+|
T Consensus 143 ~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~~--------vgvKaSGGIrt-~eda~~~i~aga~Ri 209 (228)
T COG0274 143 RKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGGR--------VGVKASGGIRT-AEDAKAMIEAGATRI 209 (228)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhccC--------ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence 8999999999999765322 14667887776655555322 33322211111 345667777886555
No 400
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=83.95 E-value=29 Score=35.85 Aligned_cols=91 Identities=14% Similarity=0.077 Sum_probs=61.4
Q ss_pred chhhH-HHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHH
Q 013498 161 NERDI-KTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYE 238 (442)
Q Consensus 161 ~~~dI-~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~ 238 (442)
+++++ +.-++.++.+|+.+|.+-+-..+-.....+|+.- ..+.+.++++.+++.|+..|.+.+..+ .--+.+.+.+
T Consensus 97 ~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~ 174 (370)
T PRK06294 97 NPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174 (370)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHH
Confidence 44554 2336667778999998865555556666777532 234566788899999986455543322 2346778888
Q ss_pred HHHHHHHcCCcEEec
Q 013498 239 ILGEVIKVGATTLNI 253 (442)
Q Consensus 239 ~~~~~~~~Gad~I~l 253 (442)
.++.+.+.+++.|.+
T Consensus 175 ~l~~~~~l~~~~is~ 189 (370)
T PRK06294 175 DLHQAITLPITHISL 189 (370)
T ss_pred HHHHHHccCCCeEEE
Confidence 999999999987765
No 401
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.85 E-value=40 Score=33.76 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHc---CCCEEEE--ccCCCC-----hhHHHHHHHHHHHhcccccccCCccceEeeecc-cchhhHHHH
Q 013498 100 SKEKLDIARQLAKL---GVDIIEA--GFPAAS-----KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSR-CNERDIKTA 168 (442)
Q Consensus 100 ~e~kl~ia~~L~~~---GV~~IEv--G~p~~~-----~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r-~~~~dI~~a 168 (442)
.++-.+.++.+.+. |+|.||+ +.|... -++.+.+..+.+.+...+ ..|.++-+.. .+.+++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-----~iPv~vKl~p~~~~~~~~~~ 176 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-----SIPVGVKTPPYTDPAQFDTL 176 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHHH
Confidence 78888999999886 7999998 456421 124555666655543321 1343333322 123355555
Q ss_pred HHHHHhC--CCCEEEEeecCC---hHHHH-HH--h-------CCCHHHHHHHHHHHHHHHHHcC---CCeEEEccCCCCC
Q 013498 169 WEAVKYA--KRPRIHTFIATS---GIHME-HK--L-------RKTKQQVVEIARSMVKFARSLG---CDDVEFSPEDAGR 230 (442)
Q Consensus 169 ~e~l~~~--g~~~v~i~~~~S---d~h~~-~~--l-------~~s~~e~l~~~~~~v~~ar~~G---~~~V~f~~edasr 230 (442)
.+.+..+ |++.|.++..+. .+|.+ .+ + +.|=......+.+.|+.+++.- +.-+.. .+=
T Consensus 177 a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~----GGI 252 (294)
T cd04741 177 AEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGV----GGV 252 (294)
T ss_pred HHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEe----CCC
Confidence 6666566 888777654442 23321 11 1 2342233344455566555432 431222 233
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHh
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
.+.+.+.+++ .+||+.|.++-..=.--|.-+.++.+.|.+.
T Consensus 253 ~s~~da~e~l----~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~ 293 (294)
T cd04741 253 LDGRGAFRMR----LAGASAVQVGTALGKEGPKVFARIEKELEDI 293 (294)
T ss_pred CCHHHHHHHH----HcCCCceeEchhhhhcCchHHHHHHHHHHhh
Confidence 4556555544 3799999998766555798888888877653
No 402
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=83.85 E-value=50 Score=34.63 Aligned_cols=165 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCCh-----------hHHHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASK-----------EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~-----------~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
.+.++=.++++.+.++|+|.||+-+-.-.- ++.+.++++.+.+... .-.|.+.-++. +..+|.
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-----~~iPv~vKLsP-n~t~i~ 197 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-----ATVPVWAKMTP-NITDIT 197 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-----hcCceEEEeCC-ChhhHH
Q ss_pred HHHHHHHhCCCCEEEEeecCCh---HHHHH------------HhCCCHHHHHHHHHHHHHHHHHc-------CCCeEEEc
Q 013498 167 TAWEAVKYAKRPRIHTFIATSG---IHMEH------------KLRKTKQQVVEIARSMVKFARSL-------GCDDVEFS 224 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd---~h~~~------------~l~~s~~e~l~~~~~~v~~ar~~-------G~~~V~f~ 224 (442)
...+++..+|++.|.++..+.. +.++. .=+.+=..+...+..+|..+++. ++. -++
T Consensus 198 ~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ip--IiG 275 (385)
T PLN02495 198 QPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRS--LSG 275 (385)
T ss_pred HHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCc--EEE
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhC
Q 013498 225 PEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 225 ~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
. .+=.+.+.+.+++ .+||+.|.++=.+=.-=|.-+.++.+.|.+.+
T Consensus 276 v--GGI~s~~Da~e~i----~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m 321 (385)
T PLN02495 276 I--GGVETGGDAAEFI----LLGADTVQVCTGVMMHGYPLVKNLCAELQDFM 321 (385)
T ss_pred E--CCCCCHHHHHHHH----HhCCCceeEeeeeeecCcHHHHHHHHHHHHHH
No 403
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=83.83 E-value=27 Score=34.12 Aligned_cols=169 Identities=15% Similarity=0.168 Sum_probs=105.8
Q ss_pred HHHHHHHHHhHcCCCEEEEccCCCChhH--HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCE
Q 013498 102 EKLDIARQLAKLGVDIIEAGFPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPR 179 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~ 179 (442)
+-++.+....++|.+.|=+ +|...... .+.+..|++.+... -++-+ -++.+-++.+++. ..+.
T Consensus 25 d~v~aA~~a~~aGAdgITv-HlReDrRHI~d~Dv~~L~~~~~~~--------lNlE~--a~~~em~~ia~~~----kP~~ 89 (239)
T PRK05265 25 DPVRAALIAEQAGADGITV-HLREDRRHIRDRDVRLLRETLKTE--------LNLEM--AATEEMLDIALEV----KPHQ 89 (239)
T ss_pred CHHHHHHHHHHcCCCEEEe-cCCCCcccCCHHHHHHHHHhcCCC--------EEecc--CCCHHHHHHHHHC----CCCE
Confidence 3567788888999999998 66432210 12344455443211 12211 2356667777664 4445
Q ss_pred EEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec-----c
Q 013498 180 IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI-----P 254 (442)
Q Consensus 180 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l-----a 254 (442)
+ +++|.....+...-|++.....+.+.+.++..++.|+. |++-. | .++ +.++.+.+.|||+|-| |
T Consensus 90 v-tLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIr-VSLFi-d---P~~----~qi~~A~~~GAd~VELhTG~yA 159 (239)
T PRK05265 90 V-TLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIR-VSLFI-D---PDP----EQIEAAAEVGADRIELHTGPYA 159 (239)
T ss_pred E-EECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCE-EEEEe-C---CCH----HHHHHHHHhCcCEEEEechhhh
Confidence 4 56787777777777888888889999999999999984 77654 2 233 4567788899998865 5
Q ss_pred CcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 255 DTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 255 DT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
+..+.....++.++....+... +.-+++| -.-||-..|.-.
T Consensus 160 ~a~~~~~~~el~~~~~aa~~a~----~lGL~Vn--AGHgLny~Nv~~ 200 (239)
T PRK05265 160 DAKTEAEAAELERIAKAAKLAA----SLGLGVN--AGHGLNYHNVKP 200 (239)
T ss_pred cCCCcchHHHHHHHHHHHHHHH----HcCCEEe--cCCCCCHHhHHH
Confidence 6655555666666665554432 1224444 455666666655
No 404
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=83.82 E-value=45 Score=32.58 Aligned_cols=180 Identities=17% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhH--HHHHHHHHHHhcccccccCCccceEeeecccchh
Q 013498 86 TLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER 163 (442)
Q Consensus 86 TLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~ 163 (442)
|||.-- +..++ +-++.+....++|.+.|=+ +|...... .+.++.|.+.+... -++-+ -++++
T Consensus 11 tLRnaR---~~~~P--d~v~aA~~a~~aGAdgITv-HlReDrRHI~d~Dv~~l~~~~~~~--------lNlE~--a~~~e 74 (237)
T TIGR00559 11 TLRNAR---GTNEP--DPLRAALIAEQAGADGITV-HLREDRRHIQDRDVYDLKEALTTP--------FNIEM--APTEE 74 (237)
T ss_pred hhhhcC---CCCCC--CHHHHHHHHHHcCCCEEEe-cCCCCcCcCCHHHHHHHHHHcCCC--------EEecc--CCCHH
Confidence 666533 33333 4577788888999999998 66432210 12345555543211 12221 23566
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~ 243 (442)
-++.+++. ..+.+ +.+|..+-.+...-|++.....+.+.+.++..++.|+. |++-. | .+ .+.++.+
T Consensus 75 mi~ia~~v----kP~~v-tLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~-VSLFi-D---P~----~~qi~~A 140 (237)
T TIGR00559 75 MIRIAEEI----KPEQV-TLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIE-VSLFI-D---AD----KDQISAA 140 (237)
T ss_pred HHHHHHHc----CCCEE-EECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCE-EEEEe-C---CC----HHHHHHH
Confidence 67777664 44454 56788777777777888888889999999999999995 77644 2 12 3556788
Q ss_pred HHcCCcEEec-----cCcccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHH
Q 013498 244 IKVGATTLNI-----PDTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIA 301 (442)
Q Consensus 244 ~~~Gad~I~l-----aDT~G~~~-P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANala 301 (442)
.+.|||+|-| |+..+... ..++.++....+... .+++-.|-.-||-..|.-.
T Consensus 141 ~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~A~------~lGL~VnAGHgLny~Nv~~ 198 (237)
T TIGR00559 141 AEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVHAH------SLGLKVNAGHGLNYHNVKY 198 (237)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHH------HcCCEEecCCCCCHHhHHH
Confidence 8999998865 45443221 234444444433322 1334444455555666543
No 405
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=83.68 E-value=8.4 Score=36.90 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCC--CCcceeEEEeec---C---CcchHHHH-HH
Q 013498 230 RSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTP--GIENVVISTHCQ---N---DLGLSTAN-TI 300 (442)
Q Consensus 230 r~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p--~~~~v~i~~H~H---N---DlGLA~AN-al 300 (442)
+.+.+.....++.+.+.|++.+.+-...|.....+..+.+..+++... +. .+.++.|.+ - .....+.- +.
T Consensus 72 ~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~-~~iie~~~~g~~~~~~~~~~~i~~~~~ 150 (235)
T cd00958 72 DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL-PLIAWMYPRGPAVKNEKDPDLIAYAAR 150 (235)
T ss_pred CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC-CEEEEEeccCCcccCccCHHHHHHHHH
Confidence 445555666688899999999988888887777777777777665321 21 244555541 0 00122332 55
Q ss_pred HHHHhCCCEEEec
Q 013498 301 AGACAGARQVEVT 313 (442)
Q Consensus 301 aAl~aGa~~vd~T 313 (442)
.|.++|||+|=+.
T Consensus 151 ~a~~~GaD~Ik~~ 163 (235)
T cd00958 151 IGAELGADIVKTK 163 (235)
T ss_pred HHHHHCCCEEEec
Confidence 6889999999885
No 406
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=83.68 E-value=3.1 Score=42.63 Aligned_cols=114 Identities=18% Similarity=0.160 Sum_probs=74.4
Q ss_pred hCCCHHHHHHHHHHHHHHHHHcCCCeEEEcc--CCCCCCCHHHHHHHHHHHH-HcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 195 LRKTKQQVVEIARSMVKFARSLGCDDVEFSP--EDAGRSDRKFLYEILGEVI-KVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 195 l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~--edasr~d~~~l~~~~~~~~-~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
..++.++++ +.++.|++.|....++.. .+ ...+.+.+.++++.+. +.| +-+|=|.|.+++++..+|-++
T Consensus 82 ~l~~~eeIl----e~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~---le~c~slG~l~~eq~~~L~~a 153 (335)
T COG0502 82 KLMEVEEIL----EAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELG---LEVCASLGMLTEEQAEKLADA 153 (335)
T ss_pred hcCCHHHHH----HHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcC---cHHhhccCCCCHHHHHHHHHc
Confidence 456666655 456677889943344432 22 2278889999999988 556 788889999999999888765
Q ss_pred HHHhCCC-------CcceeEEEeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 272 IKANTPG-------IENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 272 l~~~~p~-------~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
=...+-. .-+-.+.-|.+.|+=--+. -+-++|...=.+.+.||||
T Consensus 154 Gvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~---~vk~~Gi~vcsGgI~GlGE 205 (335)
T COG0502 154 GVDRYNHNLETSPEFYENIITTRTYEDRLNTLE---NVREAGIEVCSGGIVGLGE 205 (335)
T ss_pred ChhheecccccCHHHHcccCCCCCHHHHHHHHH---HHHHcCCccccceEecCCC
Confidence 3221100 0012244566666533332 3456799999999999999
No 407
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=83.67 E-value=11 Score=37.62 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=94.2
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccC-cccccCHHHHHHHHHHHHHhCCCCcceeE
Q 013498 207 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPD-TVGITMPTEFGKLIADIKANTPGIENVVI 284 (442)
Q Consensus 207 ~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laD-T~G~~~P~~v~~li~~l~~~~p~~~~v~i 284 (442)
+++++.|++.|+..-.|++ .+.+.+..+++.+.+.+... |.++. +...+-.+.+..++..+.+.. ++||
T Consensus 2 k~lL~~A~~~~yaV~AfN~-----~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~----~VPV 72 (276)
T cd00947 2 KELLKKAREGGYAVGAFNI-----NNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERA----SVPV 72 (276)
T ss_pred HHHHHHHHHCCceEEEEee-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHC----CCCE
Confidence 4677889999985346666 45688999999999988764 44443 333344567788888777766 3677
Q ss_pred EEeecCCcchHHHHHHHHHHhCCCE--EEeccccccc-----------------------------ccC-------cccH
Q 013498 285 STHCQNDLGLSTANTIAGACAGARQ--VEVTINGIGE-----------------------------RAG-------NASL 326 (442)
Q Consensus 285 ~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~GlGe-----------------------------raG-------Na~l 326 (442)
.+|. |-|.-......|+++|.+- +|+|-..+-| -.| -+..
T Consensus 73 ~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~p 150 (276)
T cd00947 73 ALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDP 150 (276)
T ss_pred EEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCH
Confidence 7765 4555577788999999876 5776554433 111 3457
Q ss_pred HHHHHHHHhcccccc-------CCc----cCCCChhHHHHHHHHH
Q 013498 327 EEVVMAFKCRGEHIL-------GGL----YTGINTRHIVMASKMV 360 (442)
Q Consensus 327 Eevv~~L~~~g~~~~-------~G~----~tgidl~~L~~ls~~v 360 (442)
|+...+.+..|.+.+ -|. ...+|++.|.++.+.+
T Consensus 151 e~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 151 EEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred HHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 777777776553311 022 3458888888877665
No 408
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=83.59 E-value=7 Score=42.09 Aligned_cols=69 Identities=25% Similarity=0.218 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 237 YEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 237 ~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
.+.++.+.++|++.|.+-++-|. +..+.+.++.+++.+|+ ++|.+ -.++-...+..++++||+.|++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~---~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPD---VQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCC---CCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 67888999999998765334455 47788999999999874 55665 456667788999999999999644
No 409
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=83.58 E-value=10 Score=37.98 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=53.3
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCcEEecc------CcccccCHHHHHHHH---HHHHHhCCCCcceeEEEeecCCcchHH
Q 013498 227 DAGRS-DRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKLI---ADIKANTPGIENVVISTHCQNDLGLST 296 (442)
Q Consensus 227 dasr~-d~~~l~~~~~~~~~~Gad~I~la------DT~G~~~P~~v~~li---~~l~~~~p~~~~v~i~~H~HNDlGLA~ 296 (442)
|.++. +++.+.+-++.+.+.|||.|-+. +.-.+-..+++.+++ +.+++.+ +++|++=+=+ .
T Consensus 30 dgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~----~~~ISIDT~~-----~ 100 (282)
T PRK11613 30 DGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF----EVWISVDTSK-----P 100 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCeEEEECCC-----H
Confidence 56664 78889999999999999998876 223333445655644 5555544 2678775544 3
Q ss_pred HHHHHHHHhCCCEEEec
Q 013498 297 ANTIAGACAGARQVEVT 313 (442)
Q Consensus 297 ANalaAl~aGa~~vd~T 313 (442)
.-+.+|+++||+.|+--
T Consensus 101 ~va~~AL~~GadiINDI 117 (282)
T PRK11613 101 EVIRESAKAGAHIINDI 117 (282)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 44578899999999554
No 410
>PLN02389 biotin synthase
Probab=83.34 E-value=9.8 Score=39.73 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccC--CCCC--CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPE--DAGR--SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 272 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e--dasr--~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l 272 (442)
++.+++++ .++.+++.|...+++..- .... .+.+++.++++.+.+.|.. ++=|.|.++++++.+|-++=
T Consensus 116 Ls~EeIl~----~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAG 188 (379)
T PLN02389 116 MSKDDVLE----AAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAG 188 (379)
T ss_pred CCHHHHHH----HHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcC
Confidence 46666655 455567788875554311 1122 2467888888888766643 45588998888877765541
Q ss_pred HHhCCCCcceeEE--------EeecCCcchHHHHHHHHHHhCCCEEEeccccccc
Q 013498 273 KANTPGIENVVIS--------THCQNDLGLSTANTIAGACAGARQVEVTINGIGE 319 (442)
Q Consensus 273 ~~~~p~~~~v~i~--------~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGe 319 (442)
...++ ..++ +|+..++---+.....|-++|...--+-+.|+||
T Consensus 189 ld~~~----~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE 239 (379)
T PLN02389 189 LTAYN----HNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE 239 (379)
T ss_pred CCEEE----eeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC
Confidence 11111 1111 2223344445566677888898887888999987
No 411
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=83.22 E-value=33 Score=30.56 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
.+...++.+.++|+|.|.+....+.. |....++++.+++.+|+. .+.+.+|.+.+...+. ..+.|++.|...-
T Consensus 72 ~~~~~a~~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~-~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~ 144 (200)
T cd04722 72 AVDIAAAAARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDV-KVVVKLSPTGELAAAA-----AEEAGVDEVGLGN 144 (200)
T ss_pred hhhHHHHHHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCc-eEEEEECCCCccchhh-----HHHcCCCEEEEcC
Confidence 33344678889999999999888765 888999999999987532 2445555444433221 5678999987654
Q ss_pred cc
Q 013498 315 NG 316 (442)
Q Consensus 315 ~G 316 (442)
..
T Consensus 145 ~~ 146 (200)
T cd04722 145 GG 146 (200)
T ss_pred Cc
Confidence 43
No 412
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.18 E-value=26 Score=35.74 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEccCCCC------------------------------C-CCH-------HHHHHHH
Q 013498 199 KQQVVEIARSMVKFARSLGCDDVEFSPEDAG------------------------------R-SDR-------KFLYEIL 240 (442)
Q Consensus 199 ~~e~l~~~~~~v~~ar~~G~~~V~f~~edas------------------------------r-~d~-------~~l~~~~ 240 (442)
.++.++..+++++.+++.|.. +.+.+..++ | .+. +.+.+.+
T Consensus 77 ~d~~i~~~~~l~~~vh~~G~~-~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA 155 (338)
T cd04733 77 SGEDLEAFREWAAAAKANGAL-IWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA 155 (338)
T ss_pred CHHHHHHHHHHHHHHHhcCCE-EEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence 356678888889999999874 433211100 0 111 3444556
Q ss_pred HHHHHcCCcEEec--c-----------------CcccccC---HHHHHHHHHHHHHhCCCCcceeEEEeecC----Ccch
Q 013498 241 GEVIKVGATTLNI--P-----------------DTVGITM---PTEFGKLIADIKANTPGIENVVISTHCQN----DLGL 294 (442)
Q Consensus 241 ~~~~~~Gad~I~l--a-----------------DT~G~~~---P~~v~~li~~l~~~~p~~~~v~i~~H~HN----DlGL 294 (442)
+.+.++|.|.|.| + |-.|-.. +..+.++|+.+|+.+++ +.+|++-.+- +.|+
T Consensus 156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~--d~~v~vris~~~~~~~g~ 233 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP--GFPVGIKLNSADFQRGGF 233 (338)
T ss_pred HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC--CCeEEEEEcHHHcCCCCC
Confidence 6777889998866 2 3334332 34456888999998864 4667776652 1233
Q ss_pred ------HHHHHHHHHHhCCCEEEeccc
Q 013498 295 ------STANTIAGACAGARQVEVTIN 315 (442)
Q Consensus 295 ------A~ANalaAl~aGa~~vd~Tv~ 315 (442)
.++..| -++|+++|+++-.
T Consensus 234 ~~eea~~ia~~L--e~~Gvd~iev~~g 258 (338)
T cd04733 234 TEEDALEVVEAL--EEAGVDLVELSGG 258 (338)
T ss_pred CHHHHHHHHHHH--HHcCCCEEEecCC
Confidence 223333 3569999998854
No 413
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=82.83 E-value=26 Score=33.86 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=98.0
Q ss_pred HHHHHHHHhHcCCCEEEE----cc--CC--CChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh
Q 013498 103 KLDIARQLAKLGVDIIEA----GF--PA--ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (442)
Q Consensus 103 kl~ia~~L~~~GV~~IEv----G~--p~--~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~ 174 (442)
--+-++.+.++|+|.|-+ |. |. -+| +.++.+.+... . | +-++- -.++.++.++....
T Consensus 18 l~~el~~~~~agad~iH~DVMDghFVPNiTfGp---~~v~~l~~~t~--~-------p-~DvHL--MV~~p~~~i~~fa~ 82 (220)
T COG0036 18 LGEELKALEAAGADLIHIDVMDGHFVPNITFGP---PVVKALRKITD--L-------P-LDVHL--MVENPDRYIEAFAK 82 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeccCCCcCCCcccCH---HHHHHHhhcCC--C-------c-eEEEE--ecCCHHHHHHHHHH
Confidence 345567788899998766 43 21 234 34444444210 0 1 11111 11222334444445
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
+|.++|.+..- +. +.+.+.++++|++|++. +.+++ .|+.+.+..++..+ |.|.+
T Consensus 83 agad~It~H~E-~~---------------~~~~r~i~~Ik~~G~kaGv~lnP----~Tp~~~i~~~l~~v-----D~Vll 137 (220)
T COG0036 83 AGADIITFHAE-AT---------------EHIHRTIQLIKELGVKAGLVLNP----ATPLEALEPVLDDV-----DLVLL 137 (220)
T ss_pred hCCCEEEEEec-cC---------------cCHHHHHHHHHHcCCeEEEEECC----CCCHHHHHHHHhhC-----CEEEE
Confidence 68898876543 22 33457888999999862 56666 35666666666543 44333
Q ss_pred ----cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 254 ----PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 254 ----aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.--|-..-.++-+-|+.+|+..++..++.|++ |-|.-..|+-.+.+|||+.+
T Consensus 138 MsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeV----DGGI~~~t~~~~~~AGad~~ 194 (220)
T COG0036 138 MSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEV----DGGINLETIKQLAAAGADVF 194 (220)
T ss_pred EeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEE----eCCcCHHHHHHHHHcCCCEE
Confidence 344466666677778888888776311244554 78999999999999999996
No 414
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.80 E-value=14 Score=36.99 Aligned_cols=101 Identities=8% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccCc-ccccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPDT-VGITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laDT-~G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++++.|++.|+..-.|++ .+.+.+..+++.+.+.+... |.++.. ...+-.+.+..++..+.+.. ++|
T Consensus 6 ~k~il~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~----~VP 76 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNI-----HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQY----HHP 76 (284)
T ss_pred HHHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHC----CCC
Confidence 45778889999985346665 46789999999999998664 444432 24444556777888777776 377
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEeccccc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGI 317 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~Gl 317 (442)
+.+|. |-|.-......|+++|.+- +|+|-..+
T Consensus 77 V~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l~~ 110 (284)
T PRK09195 77 LALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHLPF 110 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCCCH
Confidence 77655 5566688899999999986 57765543
No 415
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=82.76 E-value=15 Score=36.86 Aligned_cols=159 Identities=20% Similarity=0.174 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEE--ccCCCC---------hhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEA--GFPAAS---------KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~---------~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
.+.++-.++++.+.+.|++.||+ |.|... -++.+.+..+.+.+...+ -.|.++=+ +.+..++.
T Consensus 110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-----~~Pv~vKl-~~~~~~~~ 183 (299)
T cd02940 110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-----KIPVIAKL-TPNITDIR 183 (299)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-----CCCeEEEC-CCCchhHH
Confidence 38899999999999999999998 556430 034455555555543211 12433322 34444555
Q ss_pred HHHHHHHhCCCCEEEEeecCCh---H-----------HHHHHh-CCCHHHHHHHHHHHHHHHHHcC---CCeEEEccCCC
Q 013498 167 TAWEAVKYAKRPRIHTFIATSG---I-----------HMEHKL-RKTKQQVVEIARSMVKFARSLG---CDDVEFSPEDA 228 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd---~-----------h~~~~l-~~s~~e~l~~~~~~v~~ar~~G---~~~V~f~~eda 228 (442)
...+.+..+|++.|.++..... + |-.... +.|-........+.|..+++.- +. |.- ..
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ip-Iig---~G 259 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLP-ISG---IG 259 (299)
T ss_pred HHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCc-EEE---EC
Confidence 5556666789998876543322 1 100001 1221122223344555554432 32 222 23
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHH
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIA 270 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~ 270 (442)
+=.+.+.+.+++ .+||+.|.++=-.-.--|.-+.++.+
T Consensus 260 GI~~~~da~~~l----~aGA~~V~i~ta~~~~g~~~~~~i~~ 297 (299)
T cd02940 260 GIESWEDAAEFL----LLGASVVQVCTAVMNQGFTIVDDMCT 297 (299)
T ss_pred CCCCHHHHHHHH----HcCCChheEceeecccCCcHHHHHhh
Confidence 444555554443 48999888865544434555555443
No 416
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=82.74 E-value=48 Score=32.17 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=82.8
Q ss_pred ceEeeecccchhhHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCC
Q 013498 152 PVICGLSRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGR 230 (442)
Q Consensus 152 ~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr 230 (442)
-.|.|+.--+.+.+....++-...|.+.|.+- ..+ ++|+.+|+. +++ ||++.
T Consensus 16 KVIsGLnNFd~~~V~~i~~AA~~ggAt~vDIA--adp-------------------~LV~~~~~~s~lP-ICVSa----- 68 (242)
T PF04481_consen 16 KVISGLNNFDAESVAAIVKAAEIGGATFVDIA--ADP-------------------ELVKLAKSLSNLP-ICVSA----- 68 (242)
T ss_pred hheeCccccCHHHHHHHHHHHHccCCceEEec--CCH-------------------HHHHHHHHhCCCC-eEeec-----
Confidence 36778776677777666555555677777653 222 345555554 454 77755
Q ss_pred CCHHHHHHHHHHHHHcCCcEEecc--Ccc---c-ccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchH--HHHHHHH
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIP--DTV---G-ITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLS--TANTIAG 302 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~la--DT~---G-~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA--~ANalaA 302 (442)
.+|+.+. .+.++|||.|-|. |++ | ....+++-+|.+..|+.+|+ +++++-.-..+-|- +--+..-
T Consensus 69 Vep~~f~----~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~---~~LsVTVPHiL~ld~Qv~LA~~L 141 (242)
T PF04481_consen 69 VEPELFV----AAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPD---ITLSVTVPHILPLDQQVQLAEDL 141 (242)
T ss_pred CCHHHHH----HHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCC---CceEEecCccccHHHHHHHHHHH
Confidence 4455443 4557899988775 444 3 46778899999999999996 66777554333332 3344566
Q ss_pred HHhCCCEEEe
Q 013498 303 ACAGARQVEV 312 (442)
Q Consensus 303 l~aGa~~vd~ 312 (442)
..+|+|.|++
T Consensus 142 ~~~GaDiIQT 151 (242)
T PF04481_consen 142 VKAGADIIQT 151 (242)
T ss_pred HHhCCcEEEc
Confidence 7889999987
No 417
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=82.73 E-value=30 Score=37.23 Aligned_cols=260 Identities=11% Similarity=0.069 Sum_probs=133.6
Q ss_pred cccchhhHHHHHHHHHhCCCCEEEEeecCChHHH-HHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-CCCC-CCHH
Q 013498 158 SRCNERDIKTAWEAVKYAKRPRIHTFIATSGIHM-EHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGR-SDRK 234 (442)
Q Consensus 158 ~r~~~~dI~~a~e~l~~~g~~~v~i~~~~Sd~h~-~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-dasr-~d~~ 234 (442)
+|.+.+|+....+.+-.+|+..+.+.-+.+ .+. -+-++-++-|.++.++ +.+++.-+....-+.. -+.+ .+.+
T Consensus 30 tr~~t~d~l~ia~~ld~~G~~siE~wGGAt-fd~~~rfl~edpwerlr~~r---~~~~nt~lqmLlRG~n~vgy~~ypdd 105 (468)
T PRK12581 30 TRLSIEDMLPVLTILDKIGYYSLECWGGAT-FDACIRFLNEDPWERLRTLK---KGLPNTRLQMLLRGQNLLGYRHYADD 105 (468)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEecCCcc-hhhhhcccCCCHHHHHHHHH---HhCCCCceeeeeccccccCccCCcch
Confidence 467888888888888888999888764332 221 1223445544444443 3333322211111211 1222 2335
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee--cCCcchHHHHHHHHHHhCCCEEEe
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC--QNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~--HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
-+..+++.+.+.|+|.+++.|..- ....+...++.+++.- ..-...+++=. =.|.-.-+.-+-.+.++||+.|-.
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~~G-~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I 182 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDALN--DPRNIQQALRAVKKTG-KEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICI 182 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcccCC--CHHHHHHHHHHHHHcC-CEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 566678899999999999999544 7788888888888742 11011122211 013444555666777899998633
Q ss_pred cccccccccCcccHHH---HHHHHHhccccccCCccCCCChhHHHHHHHHHHH-HhCC-----CCCCCCcccc------c
Q 013498 313 TINGIGERAGNASLEE---VVMAFKCRGEHILGGLYTGINTRHIVMASKMVEE-YTGL-----HVQPHKAIVG------A 377 (442)
Q Consensus 313 Tv~GlGeraGNa~lEe---vv~~L~~~g~~~~~G~~tgidl~~L~~ls~~v~~-~~g~-----~i~~~~pivG------~ 377 (442)
.--+|.+..++ ++..|+.... ...++. .-|...+.- +..++. ..|. .+.+--+-.| -
T Consensus 183 -----kDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H-~Hnt~GlA~-An~laAieAGad~vD~ai~g~g~gagN~~tE~l 254 (468)
T PRK12581 183 -----KDMAGILTPKAAKELVSGIKAMTN-LPLIVH-THATSGISQ-MTYLAAVEAGADRIDTALSPFSEGTSQPATESM 254 (468)
T ss_pred -----CCCCCCcCHHHHHHHHHHHHhccC-CeEEEE-eCCCCccHH-HHHHHHHHcCCCEEEeeccccCCCcCChhHHHH
Confidence 22345554444 4445543211 001221 122222322 222222 2332 2222111122 1
Q ss_pred hhhhhccCccc----ccccc-------CCCCCCC---CCccccCCCccccceEEecccccH--HHHHHHHHHcCC
Q 013498 378 NAFAHESGIHQ----DGMLK-------HKGTYEI---ISPEDIGLERSSEAGIVLGKLSGR--HALKDRLKEVCQ 436 (442)
Q Consensus 378 ~aF~h~sGiH~----dg~lk-------~~~~Ye~---~~Pe~iG~~r~~~~~i~lg~~SG~--~~v~~~l~e~G~ 436 (442)
-++.+..|+.. +.+.. -...|.| |+|+.-+-.- .+..-...|- +++...|+++|.
T Consensus 255 v~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~~~~~~~~~~~d~----~v~~hqiPGGm~snl~~Ql~~~g~ 325 (468)
T PRK12581 255 YLALKEAGYDITLDETLLEQAANHLRQARQKYLADGILDPSLLFPDP----RTLQYQVPGGMLSNMLSQLKQANA 325 (468)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhcccccCCCccCCCCc----ceeeCCCCcchHHHHHHHHHHCCc
Confidence 12333344432 22111 1245776 7776555433 4777777776 799999999986
No 418
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=82.68 E-value=20 Score=35.34 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC-CCHHHHHHHHHHHHH-cCCcEEeccCcccccCHHHHHHHHHHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEILGEVIK-VGATTLNIPDTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr-~d~~~l~~~~~~~~~-~Gad~I~laDT~G~~~P~~v~~li~~l~~ 274 (442)
.|.++.+..++...+- .....|...++..+. .+++...+-+.++.+ +|++.|.|-|. .++.+.|+.+++
T Consensus 55 vtl~em~~~~~~V~r~---~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~ 125 (254)
T cd06557 55 VTLDEMIYHTRAVRRG---APRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG------AEVAETIRALVD 125 (254)
T ss_pred cCHHHHHHHHHHHHhc---CCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHH
Confidence 3667766655544332 223335555564444 458877776655555 99999999996 477788888876
Q ss_pred hCCCCcceeEEEe
Q 013498 275 NTPGIENVVISTH 287 (442)
Q Consensus 275 ~~p~~~~v~i~~H 287 (442)
. .+++.-|
T Consensus 126 a-----gipV~gH 133 (254)
T cd06557 126 A-----GIPVMGH 133 (254)
T ss_pred c-----CCCeecc
Confidence 4 2455555
No 419
>PLN02433 uroporphyrinogen decarboxylase
Probab=82.65 E-value=7.5 Score=39.76 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCcEEeccCcc-cccCHHHHHHHH--------HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 235 FLYEILGEVIKVGATTLNIPDTV-GITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~-G~~~P~~v~~li--------~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
.+.++++...++||+.+.+.|+. |.+.|+++.+++ +.+++..+ ++++.+|.+.+.. .--.-.+.
T Consensus 180 ~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~---~~~~ilh~cG~~~----~~~~~~~~ 252 (345)
T PLN02433 180 AVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHP---DVPLILYANGSGG----LLERLAGT 252 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEeCCCHH----HHHHHHhc
Confidence 45566666777899999999955 677787776544 34444333 2568889887631 11122345
Q ss_pred CCCEEEecccccccccCcccHHHHHHHHH
Q 013498 306 GARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 306 Ga~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
|++.++. +.. .++++....+.
T Consensus 253 ~~~~i~~-----d~~---~dl~e~~~~~g 273 (345)
T PLN02433 253 GVDVIGL-----DWT---VDMADARRRLG 273 (345)
T ss_pred CCCEEEc-----CCC---CCHHHHHHHhC
Confidence 8877653 222 57777655543
No 420
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=82.45 E-value=51 Score=32.19 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=86.3
Q ss_pred HHHHhHcCCCEEEEccCCCCh---hHHHHHHHHHHHhcccccccCCccceEeeec--ccchhhHHHHHHHHHhCCCCEEE
Q 013498 107 ARQLAKLGVDIIEAGFPAASK---EDFEAVRTIAKEVGNAVDAESGYVPVICGLS--RCNERDIKTAWEAVKYAKRPRIH 181 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~p~~~~---~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~--r~~~~dI~~a~e~l~~~g~~~v~ 181 (442)
+....+.|.|+|.+=-|..+. -....++++.+..+.. .|.=...+ ......+..+.......|++.|.
T Consensus 13 A~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~-------~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvK 85 (235)
T PF04476_consen 13 AEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGR-------KPVSATIGDLPMKPGTASLAALGAAATGVDYVK 85 (235)
T ss_pred HHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCC-------CceEEEecCCCCCchHHHHHHHHHHhcCCCEEE
Confidence 445567899999996654321 1234566666654321 12111111 12334444443333346999887
Q ss_pred EeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC--CeEEEccCCCCCC---CHHHHHHHHHHHHHcCCcEEeccCc
Q 013498 182 TFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGC--DDVEFSPEDAGRS---DRKFLYEILGEVIKVGATTLNIPDT 256 (442)
Q Consensus 182 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~--~~V~f~~edasr~---d~~~l~~~~~~~~~~Gad~I~laDT 256 (442)
+=+.- ..+.++.++.+...++..++..- ..|....-|..|. +|. ++.+.+.++|.+.+-| ||
T Consensus 86 vGl~g---------~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~---~l~~~a~~aG~~gvMl-DT 152 (235)
T PF04476_consen 86 VGLFG---------CKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPL---DLPEIAAEAGFDGVML-DT 152 (235)
T ss_pred EecCC---------CCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHH---HHHHHHHHcCCCEEEE-ec
Confidence 63321 12556777777777777776542 2355555566553 343 4566777889887766 77
Q ss_pred cc--------ccCHHHHHHHHHHHHHh
Q 013498 257 VG--------ITMPTEFGKLIADIKAN 275 (442)
Q Consensus 257 ~G--------~~~P~~v~~li~~l~~~ 275 (442)
.. .+.+++..+++...+++
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~ 179 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAH 179 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHc
Confidence 63 47788888888888764
No 421
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=82.45 E-value=29 Score=35.30 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc--CCCChhH-----HHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF--PAASKED-----FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~--p~~~~~d-----~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
.+.++-.++++.+.++|+|.||+-. |...+.. .+.+.++.+.+...+ -.|.++-+. .+..++....+
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-----~iPv~vKl~-p~~~~~~~~a~ 182 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-----TIPVAVKLS-PFFSALAHMAK 182 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-----CCCEEEEcC-CCccCHHHHHH
Confidence 4678889999999999999999954 2222211 123333333332211 134444332 23445655566
Q ss_pred HHHhCCCCEEEEeecCC--hHHHH-----HHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHHHHHHHH
Q 013498 171 AVKYAKRPRIHTFIATS--GIHME-----HKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEILGE 242 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~S--d~h~~-----~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l~~~~~~ 242 (442)
.+.++|++.|.+..... +++.+ ...+.|-......+.+.+..+++. .++ |.- .++=.+.+.+.+.+
T Consensus 183 ~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip-Iig---~GGI~s~~Da~e~l-- 256 (325)
T cd04739 183 QLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS-LAA---SGGVHDAEDVVKYL-- 256 (325)
T ss_pred HHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC-EEE---ECCCCCHHHHHHHH--
Confidence 66778999887754431 11110 011122222233444555555543 333 221 23445566555544
Q ss_pred HHHcCCcEEeccCcccccCHHHHHHHHHHHHHhC
Q 013498 243 VIKVGATTLNIPDTVGITMPTEFGKLIADIKANT 276 (442)
Q Consensus 243 ~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~ 276 (442)
.+||+.|.++-.+=.--|.-+.++.+.|.+.+
T Consensus 257 --~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l 288 (325)
T cd04739 257 --LAGADVVMTTSALLRHGPDYIGTLLAGLEAWM 288 (325)
T ss_pred --HcCCCeeEEehhhhhcCchHHHHHHHHHHHHH
Confidence 37999999984432223777777777776543
No 422
>PRK08185 hypothetical protein; Provisional
Probab=82.24 E-value=12 Score=37.51 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEE-eccCcccccCHHHHHHHHHHHHHhCCCCcceeEE
Q 013498 207 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTL-NIPDTVGITMPTEFGKLIADIKANTPGIENVVIS 285 (442)
Q Consensus 207 ~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I-~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~ 285 (442)
++++..|++.|+.--.|++ .+.+.+..+++.+.+.+...| .+.-..--..|..+..++..+.+.. ++|+.
T Consensus 2 ~~~L~~A~~~~yaV~AfN~-----~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~----~vPV~ 72 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNV-----ADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRS----PVPFV 72 (283)
T ss_pred HHHHHHHHHcCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHC----CCCEE
Confidence 4677889999885346666 467899999999999987654 4433222223455777777777765 37777
Q ss_pred EeecCCcchHHHHHHHHHHhCCCE--EEecccc
Q 013498 286 THCQNDLGLSTANTIAGACAGARQ--VEVTING 316 (442)
Q Consensus 286 ~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~G 316 (442)
+|. |-|.-......|+++|.+. +|+|-..
T Consensus 73 lHL--DHg~~~e~i~~ai~~Gf~SVM~D~S~l~ 103 (283)
T PRK08185 73 IHL--DHGATIEDVMRAIRCGFTSVMIDGSLLP 103 (283)
T ss_pred EEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 655 6666677889999999654 5765443
No 423
>PRK09358 adenosine deaminase; Provisional
Probab=82.20 E-value=60 Score=32.83 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=80.3
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEEccCCCCC-CCHHHHHHHHHHHHH--cC--C
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEFSPEDAGR-SDRKFLYEILGEVIK--VG--A 248 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar-~~G~~~V~f~~edasr-~d~~~l~~~~~~~~~--~G--a 248 (442)
.|+..+.++.. + +.....+.+.+++++.+.+.++.++ +.|+. +.+... ..| .+++...+.++.+.+ .+ +
T Consensus 93 ~Gvty~E~~~~--p-~~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~-~~li~~-~~r~~~~~~~~~~~~~~~~~~~~~~v 167 (340)
T PRK09358 93 DGVVYAEIRFD--P-QLHTERGLPLEEVVEAVLDGLRAAEAEFGIS-VRLILC-FMRHFGEEAAARELEALAARYRDDGV 167 (340)
T ss_pred cCCEEEEEEeC--h-hhhhhcCCCHHHHHHHHHHHHHHHHHhcCce-EEEEEE-ecCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 57766666543 2 2222458899999998888877664 45764 443321 122 234545555555554 23 2
Q ss_pred cEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH-hCCCEEEecccccccccCcccHH
Q 013498 249 TTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGAC-AGARQVEVTINGIGERAGNASLE 327 (442)
Q Consensus 249 d~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~-aGa~~vd~Tv~GlGeraGNa~lE 327 (442)
-.+.++-.-....|+.+.+.++..++. ++++.+|+.-..+ ..+...|++ .|++.| |-|-+. ..-+
T Consensus 168 vg~~l~g~e~~~~~~~~~~~~~~A~~~-----g~~~~~H~~E~~~--~~~~~~al~~lg~~ri-----~Hg~~l--~~~~ 233 (340)
T PRK09358 168 VGFDLAGDELGFPPSKFARAFDRARDA-----GLRLTAHAGEAGG--PESIWEALDELGAERI-----GHGVRA--IEDP 233 (340)
T ss_pred EEEeCCCcCCCCCHHHHHHHHHHHHHC-----CCCeEEcCCCCCc--hhHHHHHHHHcCCccc-----chhhhh--ccCH
Confidence 333443221234678888888887764 2668888875443 234556776 788763 333222 1225
Q ss_pred HHHHHHHhcc
Q 013498 328 EVVMAFKCRG 337 (442)
Q Consensus 328 evv~~L~~~g 337 (442)
+++..+..++
T Consensus 234 ~~~~~l~~~g 243 (340)
T PRK09358 234 ALMARLADRR 243 (340)
T ss_pred HHHHHHHHcC
Confidence 5666676654
No 424
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.17 E-value=7.7 Score=37.19 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=62.2
Q ss_pred HHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEee
Q 013498 209 MVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHC 288 (442)
Q Consensus 209 ~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~ 288 (442)
..+...+.++-.| +- -.+++...++++.+.+.|++.|-+. ..+| ...+.|+.+++.+|+ +.|+..+
T Consensus 8 ~~~~l~~~~~iaV-~r-----~~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~---~~IGAGT 73 (212)
T PRK05718 8 IEEILRAGPVVPV-IV-----INKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPE---ALIGAGT 73 (212)
T ss_pred HHHHHHHCCEEEE-EE-----cCCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCC---CEEEEee
Confidence 3455566665212 21 2457889999999999999998887 4555 566788999988884 6788777
Q ss_pred cCCcchHHHHHHHHHHhCCCEEEe
Q 013498 289 QNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 289 HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
=-|. ..+-.|+++||+++=+
T Consensus 74 Vl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 74 VLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred ccCH----HHHHHHHHcCCCEEEC
Confidence 6554 6678899999999743
No 425
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=82.15 E-value=43 Score=32.56 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCChHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-----CCCCCC-----
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-----DAGRSD----- 232 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~-~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-----dasr~d----- 232 (442)
.++.+++.++.+|.+.|.+.... .|... ...++. +.+.++.+.+++.|+....++.. ..+..|
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~ 90 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRE 90 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHH
Confidence 45556666667799988886432 22110 112332 23556677888899863333221 011123
Q ss_pred --HHHHHHHHHHHHHcCCcEEeccCccc---ccCHHHHHHHHHHHHHhCC--CCcceeEEEeecCCc
Q 013498 233 --RKFLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIADIKANTP--GIENVVISTHCQNDL 292 (442)
Q Consensus 233 --~~~l~~~~~~~~~~Gad~I~laDT~G---~~~P~~v~~li~~l~~~~p--~~~~v~i~~H~HNDl 292 (442)
.+++.+.++.+...|++.|+++-... ...+....++++.+++..+ ...++.|.+|.|+..
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~ 157 (284)
T PRK13210 91 RALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTP 157 (284)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcc
Confidence 35677888888889999998752211 1123344444444443211 001477888888643
No 426
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=82.14 E-value=47 Score=31.53 Aligned_cols=138 Identities=8% Similarity=-0.020 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHhHcCC---CEEEE--ccCCCChhHH-HHHHHHHHHhcccccccCCccceEeeecccc--hhhHHHH
Q 013498 97 TLTSKEKLDIARQLAKLGV---DIIEA--GFPAASKEDF-EAVRTIAKEVGNAVDAESGYVPVICGLSRCN--ERDIKTA 168 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV---~~IEv--G~p~~~~~d~-e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~--~~dI~~a 168 (442)
.++.++.++.+..+.+.+. +.|.+ |-|-..++-. +.++.+.+. ++...+..-+... .+.++..
T Consensus 45 ~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~---------g~~~~i~TNG~~~~~~~~~~~l 115 (235)
T TIGR02493 45 EVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKEL---------GIHTCLDTSGFLGGCTEAADEL 115 (235)
T ss_pred ECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHC---------CCCEEEEcCCCCCccHHHHHHH
Confidence 4788888877777655432 34444 4465555433 455555442 1111222112111 2333333
Q ss_pred HHHHHhCCCCEEEEeecC-ChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE--ccCCCCCCCHHHHHHHHHHHHH
Q 013498 169 WEAVKYAKRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF--SPEDAGRSDRKFLYEILGEVIK 245 (442)
Q Consensus 169 ~e~l~~~g~~~v~i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f--~~edasr~d~~~l~~~~~~~~~ 245 (442)
++ ..+.|.+.+.. ++.......|.+ .+.+.+.++++++.|+. +.+ ........+.+++.++++.+.+
T Consensus 116 l~-----~~d~v~isl~~~~~~~~~~~~g~~----~~~v~~~i~~l~~~g~~-~~v~~vv~~~~~~n~~ei~~l~~~~~~ 185 (235)
T TIGR02493 116 LE-----YTDLVLLDIKHFNPEKYKKLTGVS----LQPTLDFAKYLAKRNKP-IWIRYVLVPGYTDSEEDIEALAEFVKT 185 (235)
T ss_pred HH-----hCCEEEEeCCCCCHHHHHHHHCCC----cHHHHHHHHHHHhCCCc-EEEEEeeeCCcCCCHHHHHHHHHHHHh
Confidence 32 34566554443 332222223444 34566778888999875 432 2222223457888999999988
Q ss_pred cC-CcEEec
Q 013498 246 VG-ATTLNI 253 (442)
Q Consensus 246 ~G-ad~I~l 253 (442)
.| +..+.+
T Consensus 186 l~~~~~~~~ 194 (235)
T TIGR02493 186 LPNVERVEV 194 (235)
T ss_pred CCCCceEEe
Confidence 88 455544
No 427
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=82.11 E-value=17 Score=36.36 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccCc-ccccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPDT-VGITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laDT-~G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++.+.|++.|+.--.|++ .+.+.+..+++.+.+.++.. |.++.. ...+-...+..++..+.+... +|
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~-----~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~----VP 74 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNI-----HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN----MP 74 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45778889999985346666 46789999999999998764 444332 233445667778888877763 77
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEecccc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTING 316 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~G 316 (442)
|.+|. |-|--......|+++|.+- +|+|-..
T Consensus 75 ValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 75 LALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCC
Confidence 88665 5555677789999999976 4665443
No 428
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=82.10 E-value=14 Score=36.74 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 229 GRSDRKFLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+..|.+-+.++++.+.+.|++.|.++-|+|= ++.++-.++++.+.+... ++.+++ .+++.--++.-+..|-++
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~---~vi~gv-g~~~~~~ai~~a~~a~~~ 90 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD---KVIFQV-GSLNLEESIELARAAKSF 90 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC---CEEEEe-CcCCHHHHHHHHHHHHHc
Confidence 6788888888888888888888888888875 677778888887777653 233332 256677777778888888
Q ss_pred CCCEEEecc
Q 013498 306 GARQVEVTI 314 (442)
Q Consensus 306 Ga~~vd~Tv 314 (442)
||+.+=+.-
T Consensus 91 Gad~v~v~~ 99 (279)
T cd00953 91 GIYAIASLP 99 (279)
T ss_pred CCCEEEEeC
Confidence 888876544
No 429
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=82.09 E-value=18 Score=36.32 Aligned_cols=102 Identities=10% Similarity=0.096 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-EeccCcc-cccCHHHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIPDTV-GITMPTEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~laDT~-G~~~P~~v~~li~~l~~~~p~~~~v~ 283 (442)
++++.+.|++.++..-.|++ .+.+.+..+++.+.+.+... |.+.... ...--+.+..++..+.++.+ +|
T Consensus 6 ~k~iL~~A~~~~yaV~AfNv-----~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~----VP 76 (284)
T PRK12857 6 VAELLKKAEKGGYAVGAFNC-----NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS----VP 76 (284)
T ss_pred HHHHHHHHHHcCCeEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC----CC
Confidence 45778889999885346666 35689999999999988664 4454432 22333446677777776653 67
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCE--EEecccccc
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIG 318 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~GlG 318 (442)
+.+|. |-|.-......|+++|.+- +|+|-..+-
T Consensus 77 ValHL--DH~~~~e~i~~ai~~GftSVM~DgS~lp~e 111 (284)
T PRK12857 77 VALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKLPLE 111 (284)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCHH
Confidence 77655 5566677899999999986 587665443
No 430
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=82.05 E-value=31 Score=34.29 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEcc------CCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 198 TKQQVVEIARSMVKFARSLGCDDVEFSP------EDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 198 s~~e~l~~~~~~v~~ar~~G~~~V~f~~------edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
+..+.++++.+.++.|+++|+..|.+.. .+....|++.+...++...+.|||.|-..=| ..|+.+++.++.
T Consensus 124 ~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~yt---g~~e~F~~vv~~ 200 (265)
T COG1830 124 TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYT---GDPESFRRVVAA 200 (265)
T ss_pred chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCC---CChHHHHHHHHh
Confidence 3467789999999999999998554321 1222577888888888999999998754321 223666665554
Q ss_pred HHHhCCCCcceeEEEee--c-CCcchHHHHHHHHHHhCCCEE
Q 013498 272 IKANTPGIENVVISTHC--Q-NDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 272 l~~~~p~~~~v~i~~H~--H-NDlGLA~ANalaAl~aGa~~v 310 (442)
.. ++|-+-. - ++.--++.-.-+|+++||..+
T Consensus 201 ~~--------vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 201 CG--------VPVVIAGGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred CC--------CCEEEeCCCCCCChHHHHHHHHHHHHccCcch
Confidence 32 2233322 1 244456666777777776654
No 431
>PRK05985 cytosine deaminase; Provisional
Probab=81.90 E-value=67 Score=33.13 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc---EEeccCcccccCHHHHHHHHHHHHHhCCCCc
Q 013498 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT---TLNIPDTVGITMPTEFGKLIADIKANTPGIE 280 (442)
Q Consensus 204 ~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad---~I~laDT~G~~~P~~v~~li~~l~~~~p~~~ 280 (442)
+.+.++++.|++.|.. +.+-+-.........+.++++.+.+.|.. .+.-+...|.+.+.+..++++.+++.
T Consensus 191 ~~l~~~~~~A~~~g~~-i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~----- 264 (391)
T PRK05985 191 GQLDIVFGLAERHGVG-IDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA----- 264 (391)
T ss_pred HHHHHHHHHHHHhCCC-cEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc-----
Confidence 4556788899999985 55544112222345666777777777764 66777788888999998999998875
Q ss_pred ceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 281 NVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 281 ~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
++.+ .|+. ..+.++.+.-..+++|++..=+|
T Consensus 265 g~~v-~~~~-~~~~~~~~~~~l~~~Gv~v~lGt 295 (391)
T PRK05985 265 GVAI-MTNA-PGSVPVPPVAALRAAGVTVFGGN 295 (391)
T ss_pred CCeE-EEeC-CCCCCCCCHHHHHHCCCeEEEec
Confidence 1333 3553 34667788899999999875443
No 432
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=81.87 E-value=29 Score=33.44 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=16.8
Q ss_pred HHHHHHHhHcCCCEEEEccCCC
Q 013498 104 LDIARQLAKLGVDIIEAGFPAA 125 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEvG~p~~ 125 (442)
.+.++.+.++|++.|-+..+.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s 98 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS 98 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC
Confidence 5568888888999988876543
No 433
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.81 E-value=22 Score=35.55 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=78.5
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH------HHHHHHHHHHHhC
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT------EFGKLIADIKANT 276 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~------~v~~li~~l~~~~ 276 (442)
..++++.+...+ +.+. + +|-..-.+..+.+.++..| ..++.|.|++=+ .+. .+..-++.+|+..
T Consensus 115 T~~~v~~~~~~~---~~i~--~-TRKt~Pg~R~~~k~Av~~GGg~~HR~~L~d~ili-kdnHi~~~g~v~~av~~~r~~~ 187 (277)
T PRK05742 115 ARHYADLVAGTQ---VKLL--D-TRKTLPGLRLAQKYAVTCGGCHNHRIGLYDAFLI-KENHIAACGGIAQAVAAAHRIA 187 (277)
T ss_pred HHHHHHHhcCCC---eEEE--e-cCCCCCchhHHHHHHHHhcCCccccCCCcccEEe-cHHHHHHhCCHHHHHHHHHHhC
Confidence 445555553322 4443 2 4555556777777777765 357777777531 111 1344567777776
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHH
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA 356 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~l 356 (442)
|+ .+|++=+|| ..-+.+|+++|+|+|-. +|.++|++-...+....+...-.--||+++.+.++
T Consensus 188 ~~---~~I~VEv~t-----leea~eA~~~gaD~I~L---------D~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~ 250 (277)
T PRK05742 188 PG---KPVEVEVES-----LDELRQALAAGADIVML---------DELSLDDMREAVRLTAGRAKLEASGGINESTLRVI 250 (277)
T ss_pred CC---CeEEEEeCC-----HHHHHHHHHcCCCEEEE---------CCCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHH
Confidence 53 568888888 56678899999999922 47788887766654311111122347899988777
Q ss_pred HH
Q 013498 357 SK 358 (442)
Q Consensus 357 s~ 358 (442)
+.
T Consensus 251 a~ 252 (277)
T PRK05742 251 AE 252 (277)
T ss_pred HH
Confidence 63
No 434
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=81.60 E-value=7 Score=39.62 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCcEEeccCccc---ccCHHHHHHHH----HHHHHhCCCCcceeEEEeecCCcchHHHHHHHH-HHhC
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACAG 306 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G---~~~P~~v~~li----~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA-l~aG 306 (442)
.+.+.++...++||+.|.+.|+.+ .+.|+++.+++ +.+.+.+.. . ...+|.+-+.. +.+.. .+.|
T Consensus 181 ~~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~--~-~~ilH~cG~~~----~~l~~~~~~g 253 (339)
T PRK06252 181 FCIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKG--L-PTILHICGDLT----SILEEMADCG 253 (339)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhcc--C-CcEEEECCCch----HHHHHHHhcC
Confidence 345566667788999999999975 68999988776 333344432 1 46678775542 22332 3468
Q ss_pred CCEEEecccccccccCcccHHHHHHHH
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAF 333 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L 333 (442)
++.++. .++ .+++++...+
T Consensus 254 ~d~~~~-----d~~---~dl~~~~~~~ 272 (339)
T PRK06252 254 FDGISI-----DEK---VDVKTAKENV 272 (339)
T ss_pred CCeecc-----CCC---CCHHHHHHHh
Confidence 887542 222 3677665444
No 435
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=81.57 E-value=18 Score=38.53 Aligned_cols=133 Identities=18% Similarity=0.202 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhHcCCCEEEEccC-CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCE
Q 013498 101 KEKLDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPR 179 (442)
Q Consensus 101 e~kl~ia~~L~~~GV~~IEvG~p-~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~ 179 (442)
++-.+-++.|.++|++.|++-.- ..++.-++.++.+.+..++ .+.+++-. ++.++.+.+.++ |++.
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~--------~~vi~G~v-~t~~~a~~l~~a----Gad~ 289 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPD--------LDIIAGNV-ATAEQAKALIDA----GADG 289 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCC--------CCEEEEeC-CCHHHHHHHHHh----CCCE
Confidence 45567788999999999999542 2334446778888765321 23444433 467777766664 8898
Q ss_pred EEEeecCChHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccC
Q 013498 180 IHTFIATSGIHMEH-KLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD 255 (442)
Q Consensus 180 v~i~~~~Sd~h~~~-~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laD 255 (442)
|.+-+..--++..+ ..++...+ +..+.++.+++++.|.. |.. |++-.++..+ + .+..+||+.+.+.-
T Consensus 290 i~vg~g~G~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vp-via---dGGi~~~~di---~-kAla~GA~~V~~G~ 357 (450)
T TIGR01302 290 LRVGIGPGSICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIP-VIA---DGGIRYSGDI---V-KALAAGADAVMLGS 357 (450)
T ss_pred EEECCCCCcCCccceecCCCccH-HHHHHHHHHHHhhcCCe-EEE---eCCCCCHHHH---H-HHHHcCCCEEEECc
Confidence 87643211011111 11233232 35556677778878764 333 3343334433 2 34468999998743
No 436
>PLN02433 uroporphyrinogen decarboxylase
Probab=81.43 E-value=59 Score=33.24 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHcCCCEEEEccC---CCChhHHH-----HHHHHHHHh
Q 013498 102 EKLDIARQLAKLGVDIIEAGFP---AASKEDFE-----AVRTIAKEV 140 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p---~~~~~d~e-----~v~~l~~~~ 140 (442)
.-+++++.+.++|++.|.+.-| ..++++|+ .++++.+.+
T Consensus 180 ~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i 226 (345)
T PLN02433 180 AVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEV 226 (345)
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3445666677899999988643 23566654 334555543
No 437
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=81.36 E-value=25 Score=36.54 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=64.4
Q ss_pred EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccC-cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HH
Q 013498 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-AN 298 (442)
Q Consensus 221 V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laD-T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-AN 298 (442)
.-|++-.++ .+++.-.+-++.+.+.+.+.+.|.- ++| -.++++.+++..++..+|. +.|. |. +|.+. .+
T Consensus 178 ~lfgiVqGg-~~~dLR~~sa~~l~~~~~~GyaIGGl~~g-e~~~~~~~~l~~~~~~lP~--~kPr--yl---~Gvg~P~~ 248 (367)
T TIGR00449 178 ALFGIVQGG-TYPDLRRQSAEGLAELDFDGYAIGGVSVG-EPKRDMLRILEHVAPLLPK--DKPR--YL---MGVGTPEL 248 (367)
T ss_pred eEEEEecCC-CCHHHHHHHHHHHhhCCCCeEEEeCcccC-CCHHHHHHHHHHHHhhCCc--ccce--Ee---cCCCCHHH
Confidence 345553333 2334333447888888888888876 343 3358899999999988885 3343 33 55654 68
Q ss_pred HHHHHHhCCCEEEecccccccccCcc
Q 013498 299 TIAGACAGARQVEVTINGIGERAGNA 324 (442)
Q Consensus 299 alaAl~aGa~~vd~Tv~GlGeraGNa 324 (442)
.+.++..|+|.+|++.--.=.|.|.+
T Consensus 249 i~~~v~~GvD~FD~~~ptr~Ar~G~a 274 (367)
T TIGR00449 249 LANAVSLGIDMFDCVAPTRYARNGTL 274 (367)
T ss_pred HHHHHHcCCCEEeeCCccccccCCee
Confidence 89999999999999887655566654
No 438
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.35 E-value=25 Score=33.43 Aligned_cols=112 Identities=14% Similarity=0.120 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHH
Q 013498 165 IKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVI 244 (442)
Q Consensus 165 I~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~ 244 (442)
.+..++....+|.+.|++....+ .+.++.+++.++. +.+.. .+. +.++.+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~-~i~~v-----~~~----~~~~~~~ 119 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIK-VIPTV-----TSV----EEARKAE 119 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCE-EEEeC-----CCH----HHHHHHH
Confidence 33334444556999888643211 1234555666764 54433 122 3345566
Q ss_pred HcCCcEEeccC--cccccCHH--HHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HHHHHHHHhCCCEEEec
Q 013498 245 KVGATTLNIPD--TVGITMPT--EFGKLIADIKANTPGIENVVISTHCQNDLGLST-ANTIAGACAGARQVEVT 313 (442)
Q Consensus 245 ~~Gad~I~laD--T~G~~~P~--~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-ANalaAl~aGa~~vd~T 313 (442)
+.|+|.|.+-. +.|...+. ...++++.+++.++ +++-.. .|... .|...++.+||+.|...
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~----~Pvi~~----GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD----IPVIAA----GGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC----CCEEEE----CCCCCHHHHHHHHHcCCcEEEEc
Confidence 78999887632 23444442 34667888887653 445543 36655 78888899999998764
No 439
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=81.21 E-value=31 Score=34.85 Aligned_cols=123 Identities=22% Similarity=0.295 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCCCCCCHHHHHHHHHHHHHc-CCcEEeccCcccccCHHHHHHHHHHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAGRSDRKFLYEILGEVIKV-GATTLNIPDTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-edasr~d~~~l~~~~~~~~~~-Gad~I~laDT~G~~~P~~v~~li~~l~~ 274 (442)
++.++ +.+.++.+.+.|...|.|+. |-.-+.+ +.++++.+.+. |...+.+ .|.|.+.++ .+..+++
T Consensus 43 ls~ee----i~~~i~~~~~~gv~~V~ltGGEPll~~~---l~~li~~i~~~~gi~~v~i-tTNG~ll~~----~~~~L~~ 110 (334)
T TIGR02666 43 LTFEE----IERLVRAFVGLGVRKVRLTGGEPLLRKD---LVELVARLAALPGIEDIAL-TTNGLLLAR----HAKDLKE 110 (334)
T ss_pred CCHHH----HHHHHHHHHHCCCCEEEEECccccccCC---HHHHHHHHHhcCCCCeEEE-EeCchhHHH----HHHHHHH
Confidence 45554 44566777788887777743 4333433 55666666653 6656666 688988765 3444554
Q ss_pred hCCCCcceeEEEeecCC------------cchHHHHHHHHHHhCCC--EEEecccccccccCcc-cHHHHHHHHHhcc
Q 013498 275 NTPGIENVVISTHCQND------------LGLSTANTIAGACAGAR--QVEVTINGIGERAGNA-SLEEVVMAFKCRG 337 (442)
Q Consensus 275 ~~p~~~~v~i~~H~HND------------lGLA~ANalaAl~aGa~--~vd~Tv~GlGeraGNa-~lEevv~~L~~~g 337 (442)
.- +..+.|++++.+. +.-.+.+...+.++|.. .+++.+. -|. |. .+++++..+...+
T Consensus 111 ~g--l~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~-~g~---n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 111 AG--LKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVM-RGV---NDDEIVDLAEFAKERG 182 (334)
T ss_pred cC--CCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-CCC---CHHHHHHHHHHHHhcC
Confidence 31 2247788876442 12234444455567776 2444332 111 22 3455555555544
No 440
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=81.15 E-value=30 Score=36.00 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=65.8
Q ss_pred EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccC-cccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHH-HH
Q 013498 221 VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLST-AN 298 (442)
Q Consensus 221 V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laD-T~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~-AN 298 (442)
.-|++-.++ .+++.-.+-++.+.+.+.+.+.|.- ++| -..+++.+++..+...+|. +.|. |. +|.+. .+
T Consensus 179 ~lfgiVqGg-~~~dLR~~sa~~l~~~~~~G~aIGGl~~g-e~~~~~~~iv~~~~~~lp~--~kPr--yl---~Gvg~P~~ 249 (368)
T TIGR00430 179 ALFGIVQGG-TYEDLRSQSAEGLIELDFPGYAIGGLSVG-EPKEDMLRILEHTAPLLPK--DKPR--YL---MGVGTPED 249 (368)
T ss_pred eEEEEeCCC-CCHHHHHHHHHHHHHCCCCeeEeCCccCC-CCHHHHHHHHHHHHhhCCc--ccce--ee---cCCCCHHH
Confidence 456654433 3445444567888888988888876 344 4566789999998888874 3332 32 55554 57
Q ss_pred HHHHHHhCCCEEEecccccccccCcc
Q 013498 299 TIAGACAGARQVEVTINGIGERAGNA 324 (442)
Q Consensus 299 alaAl~aGa~~vd~Tv~GlGeraGNa 324 (442)
.+.++..|+|.+|++.--.=.|.|.+
T Consensus 250 i~~~v~~GvD~FD~~~ptr~Ar~G~a 275 (368)
T TIGR00430 250 LLNAIRRGIDMFDCVMPTRNARNGTL 275 (368)
T ss_pred HHHHHHcCCCEEEecCcccccCCCce
Confidence 88999999999999987665566655
No 441
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=81.10 E-value=59 Score=31.98 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=98.4
Q ss_pred HHHHHHHhCCCCEEEEeecCChH----------HHH-HHhCCCHHHHHHHHHHHHHHHHHc--CCCeEEEccCCCCCCCH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGI----------HME-HKLRKTKQQVVEIARSMVKFARSL--GCDDVEFSPEDAGRSDR 233 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~----------h~~-~~l~~s~~e~l~~~~~~v~~ar~~--G~~~V~f~~edasr~d~ 233 (442)
..++++...|++.|.+=+|-||. +.+ -+-|.+.++.++ .++..|+. ....+ .+ +..++
T Consensus 28 ~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~----~v~~ir~~~~~~plv--~m---~Y~Np 98 (256)
T TIGR00262 28 EIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFE----LLKKVRQKHPNIPIG--LL---TYYNL 98 (256)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCEE--EE---EeccH
Confidence 34445556788888887777772 111 134666666554 45555543 33322 11 22233
Q ss_pred H---HHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 234 K---FLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 234 ~---~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
- =+.++++.+.++|++.+.+.|- .+++..+++..++++- +.+.+=+--+.-..-...+++...|.-++
T Consensus 99 i~~~G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~g-----l~~i~lv~P~T~~eri~~i~~~~~gfiy~ 169 (256)
T TIGR00262 99 IFRKGVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHG-----VKPIFLVAPNADDERLKQIAEKSQGFVYL 169 (256)
T ss_pred HhhhhHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCC-----CcEEEEECCCCCHHHHHHHHHhCCCCEEE
Confidence 1 1356788899999999999985 5688889999998863 33444455555555555666666666665
Q ss_pred Eeccccccccc--CcccHHHHHHHHHhccccccCCccCCCC-hhHHHHHH
Q 013498 311 EVTINGIGERA--GNASLEEVVMAFKCRGEHILGGLYTGIN-TRHIVMAS 357 (442)
Q Consensus 311 d~Tv~GlGera--GNa~lEevv~~L~~~g~~~~~G~~tgid-l~~L~~ls 357 (442)
=+ +.|..+-. =+.++.+.+..++...... .-+.-||+ .+.+.++.
T Consensus 170 vs-~~G~TG~~~~~~~~~~~~i~~lr~~~~~p-i~vgfGI~~~e~~~~~~ 217 (256)
T TIGR00262 170 VS-RAGVTGARNRAASALNELVKRLKAYSAKP-VLVGFGISKPEQVKQAI 217 (256)
T ss_pred EE-CCCCCCCcccCChhHHHHHHHHHhhcCCC-EEEeCCCCCHHHHHHHH
Confidence 44 45665432 2345666666666542111 12344665 55554443
No 442
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=81.09 E-value=12 Score=38.70 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=58.3
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHc
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~ 246 (442)
.++.++.+|+.+|.+-+-..+-.....+++. ...+.+.++++.+++.|+..|.+.+..+ ..-+.+.+.+.++.+.+.
T Consensus 102 ~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l 179 (377)
T PRK08599 102 KLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALAL 179 (377)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHcc
Confidence 3556667899999887666555566667653 2246677889999999985444433222 234567888899999999
Q ss_pred CCcEEec
Q 013498 247 GATTLNI 253 (442)
Q Consensus 247 Gad~I~l 253 (442)
+++.|.+
T Consensus 180 ~~~~i~~ 186 (377)
T PRK08599 180 DIPHYSA 186 (377)
T ss_pred CCCEEee
Confidence 9987754
No 443
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=80.97 E-value=21 Score=35.51 Aligned_cols=90 Identities=11% Similarity=-0.045 Sum_probs=52.8
Q ss_pred HhCCCCEEEEeecCChHHHHHHhC------CCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC-CCHHHHHHH-HHHHH
Q 013498 173 KYAKRPRIHTFIATSGIHMEHKLR------KTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGR-SDRKFLYEI-LGEVI 244 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~h~~~~l~------~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr-~d~~~l~~~-~~~~~ 244 (442)
..+|++.+.+ . |.-.-..+| .|.++.+..+...++-+ ....|...++..+. .+++...+- .+.+.
T Consensus 32 e~aG~d~i~v--G--ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~---~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 32 DEAGVDVILV--G--DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA---PRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHcCCCEEEE--C--HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 3468888753 2 211112233 46677666555443322 22225555554444 677765454 55555
Q ss_pred HcCCcEEeccCcccccCHHHHHHHHHHHHHh
Q 013498 245 KVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 245 ~~Gad~I~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
++|++.|.|-|. .++.+.|+.+++.
T Consensus 105 ~aGa~aVkiEdg------~~~~~~I~al~~a 129 (264)
T PRK00311 105 EAGAHAVKLEGG------EEVAETIKRLVER 129 (264)
T ss_pred HhCCeEEEEcCc------HHHHHHHHHHHHC
Confidence 599999999996 4677788888764
No 444
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=80.91 E-value=62 Score=34.46 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHhHcCCCEEEEcc------C--CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhH-H
Q 013498 96 ATLTSKEKLDIARQLAKLGVDIIEAGF------P--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDI-K 166 (442)
Q Consensus 96 ~~fs~e~kl~ia~~L~~~GV~~IEvG~------p--~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI-~ 166 (442)
...+.++.++=++.|.+.|++.|.+.- . ....+-.+.++.+.+..+. . .+. |.-....++ +
T Consensus 176 rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~-------~--rir-~~~~~p~~l~~ 245 (445)
T PRK14340 176 RSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPE-------M--RIR-FTTSHPKDISE 245 (445)
T ss_pred cCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCC-------c--EEE-EccCChhhcCH
Confidence 457889999999999999999887721 1 0011112344444332111 1 121 111223332 2
Q ss_pred HHHHHHHhC--CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCC---eEEEccCCCCCCCHHHHHHH
Q 013498 167 TAWEAVKYA--KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSL--GCD---DVEFSPEDAGRSDRKFLYEI 239 (442)
Q Consensus 167 ~a~e~l~~~--g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~--G~~---~V~f~~edasr~d~~~l~~~ 239 (442)
.-++.++.. |...+++-+=..+-.+...+++. ...+...++++.+|+. |+. .+.++.+.. +.+.+.+.
T Consensus 246 ell~~~~~~~~g~~~l~iglQSgsd~vLk~m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgE---T~edf~~t 320 (445)
T PRK14340 246 SLVRTIAARPNICNHIHLPVQSGSSRMLRRMNRG--HTIEEYLEKIALIRSAIPGVTLSTDLIAGFCGE---TEEDHRAT 320 (445)
T ss_pred HHHHHHHhCCCCCCeEEECCCcCCHHHHHhcCCC--CCHHHHHHHHHHHHHhCCCCEEeccEEEECCCC---CHHHHHHH
Confidence 223444443 67788885444333455566653 2345667888889988 763 234454332 34556677
Q ss_pred HHHHHHcCCcEEe
Q 013498 240 LGEVIKVGATTLN 252 (442)
Q Consensus 240 ~~~~~~~Gad~I~ 252 (442)
++.+.+.+.+.+.
T Consensus 321 l~~~~~~~~~~~~ 333 (445)
T PRK14340 321 LSLMEEVRFDSAF 333 (445)
T ss_pred HHHHHhcCCCEEe
Confidence 7777777776554
No 445
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=80.80 E-value=54 Score=34.02 Aligned_cols=131 Identities=18% Similarity=0.075 Sum_probs=74.3
Q ss_pred CCCEEEEc--cCCCCh-hHHH-HHHHHHHHhcccccccCCccceEeeecccchhhHH-HHHHHHHhCCCCEEEEeecCCh
Q 013498 114 GVDIIEAG--FPAASK-EDFE-AVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK-TAWEAVKYAKRPRIHTFIATSG 188 (442)
Q Consensus 114 GV~~IEvG--~p~~~~-~d~e-~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~-~a~e~l~~~g~~~v~i~~~~Sd 188 (442)
.++.|=+| .|..-+ +..+ .+..+.+..+.. . ...++.- ++++++. .-++.++.+|+.+|.+=+-.-+
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~--~----~~eit~E--~~P~~i~~e~L~~l~~~GvnrislGvQS~~ 126 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVA--D----DIEITLE--ANPTSVEAGRFRGYRAAGVNRVSLGVQALN 126 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCC--C----CccEEEE--ECcCcCCHHHHHHHHHcCCCEEEEecccCC
Confidence 46666664 565443 3433 445554443221 0 0123322 2444443 2356677789999988655555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHcCCcEEeccC
Q 013498 189 IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKVGATTLNIPD 255 (442)
Q Consensus 189 ~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~Gad~I~laD 255 (442)
-.....+|+. ...+.+.++++.+++.+.. |.+.++.+ ..-+.+.+.+-++.+.+.+++.|.+-.
T Consensus 127 d~vL~~l~R~--~~~~~~~~ai~~~~~~~~~-v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~ 191 (380)
T PRK09057 127 DADLRFLGRL--HSVAEALAAIDLAREIFPR-VSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQ 191 (380)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHHHHhCcc-EEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeec
Confidence 5566667653 1234455677778887653 66544332 234556666778888899999877663
No 446
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=80.80 E-value=42 Score=36.34 Aligned_cols=133 Identities=15% Similarity=0.215 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHhHcCCCEEEEccC-CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCC
Q 013498 99 TSKEKLDIARQLAKLGVDIIEAGFP-AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKR 177 (442)
Q Consensus 99 s~e~kl~ia~~L~~~GV~~IEvG~p-~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~ 177 (442)
+.++ ++.++.|.++|++.|++-.. +.++.-++.+++|.+..++ .+.+++ .-.+.++.+.+.+ +|+
T Consensus 239 ~~~~-~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~--------~~v~aG-~V~t~~~a~~~~~----aGa 304 (495)
T PTZ00314 239 RPED-IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPH--------VDIIAG-NVVTADQAKNLID----AGA 304 (495)
T ss_pred CHHH-HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCC--------ceEEEC-CcCCHHHHHHHHH----cCC
Confidence 3444 89999999999999998542 1234447888888875322 133333 2235666666655 489
Q ss_pred CEEEEeec-CC--hHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc
Q 013498 178 PRIHTFIA-TS--GIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254 (442)
Q Consensus 178 ~~v~i~~~-~S--d~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la 254 (442)
+.|.+-+. .| -.+. ..+....+ +..+.++.+.+++.|+. |.. |.+-.++..+ + .+..+||+.+.+.
T Consensus 305 d~I~vg~g~Gs~~~t~~--~~~~g~p~-~~ai~~~~~~~~~~~v~-vIa---dGGi~~~~di---~-kAla~GA~~Vm~G 373 (495)
T PTZ00314 305 DGLRIGMGSGSICITQE--VCAVGRPQ-ASAVYHVARYARERGVP-CIA---DGGIKNSGDI---C-KALALGADCVMLG 373 (495)
T ss_pred CEEEECCcCCcccccch--hccCCCCh-HHHHHHHHHHHhhcCCe-EEe---cCCCCCHHHH---H-HHHHcCCCEEEEC
Confidence 98865321 11 1111 12222222 34556677788888864 332 4443444433 3 3345899998875
Q ss_pred Cc
Q 013498 255 DT 256 (442)
Q Consensus 255 DT 256 (442)
--
T Consensus 374 ~~ 375 (495)
T PTZ00314 374 SL 375 (495)
T ss_pred ch
Confidence 43
No 447
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=80.79 E-value=8.1 Score=38.81 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEec
Q 013498 238 EILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVT 313 (442)
Q Consensus 238 ~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~T 313 (442)
.-++.+.++|+|.| |-...++| ..+++..+|+.+. +++-.-|-| +..++.++..||+.|-+|
T Consensus 87 ~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f~----~~fmad~~~-----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDFT----VPFVCGARN-----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHcC----CCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence 44678889999999 88888999 5688999998872 566666655 778899999999999888
No 448
>PRK06256 biotin synthase; Validated
Probab=80.78 E-value=21 Score=36.22 Aligned_cols=16 Identities=13% Similarity=0.026 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHcCCCc
Q 013498 423 GRHALKDRLKEVCQYV 438 (442)
Q Consensus 423 G~~~v~~~l~e~G~~~ 438 (442)
+...=...++++|+++
T Consensus 309 ~~~~d~~~~~~~g~~~ 324 (336)
T PRK06256 309 PATADLDMIEDLGFEI 324 (336)
T ss_pred ChHHHHHHHHHCCCCc
Confidence 3344445677777654
No 449
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=80.65 E-value=8.5 Score=38.12 Aligned_cols=139 Identities=21% Similarity=0.284 Sum_probs=78.3
Q ss_pred HHHHHHhHcCCCEEEEc---------cCCCChhHH----HHHHHHHHHhcccc-cccCCccceEeeecccchhhHHHHHH
Q 013498 105 DIARQLAKLGVDIIEAG---------FPAASKEDF----EAVRTIAKEVGNAV-DAESGYVPVICGLSRCNERDIKTAWE 170 (442)
Q Consensus 105 ~ia~~L~~~GV~~IEvG---------~p~~~~~d~----e~v~~l~~~~~~~~-~~~~~l~~~i~~~~r~~~~dI~~a~e 170 (442)
..++.++++|+|.|-|| ++...+-.. .-.+.+++-.++.+ -.+ .| +..+....++-++.|.+
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~D---mP-f~sy~~s~e~av~nA~r 102 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVAD---MP-FGSYQASPEQAVRNAGR 102 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE------TTSSTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEec---CC-cccccCCHHHHHHHHHH
Confidence 56889999999999997 333333222 23334433332220 000 01 01111223455788888
Q ss_pred HHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----EccCC---------CCCC--CHHH
Q 013498 171 AVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPED---------AGRS--DRKF 235 (442)
Q Consensus 171 ~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~ed---------asr~--d~~~ 235 (442)
.++++|.+.|.+--.. ...+.|+...+.|+. |. +.+.. .+|+ +...
T Consensus 103 l~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIP-V~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~ 163 (261)
T PF02548_consen 103 LMKEAGADAVKLEGGA------------------EIAETIKALVDAGIP-VMGHIGLTPQSVHQLGGYRVQGKTAEEAEK 163 (261)
T ss_dssp HHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT---EEEEEES-GGGHHHHTSS--CSTSHHHHHH
T ss_pred HHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCc-EEEEecCchhheeccCCceEEecCHHHHHH
Confidence 8888999999875432 234677778889986 42 22321 1233 3457
Q ss_pred HHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHH
Q 013498 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIAD 271 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~ 271 (442)
+.+-++++.++|+-.|.|- +.|.++.+.|..
T Consensus 164 l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~ 194 (261)
T PF02548_consen 164 LLEDAKALEEAGAFAIVLE-----CVPAELAKAITE 194 (261)
T ss_dssp HHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHH
T ss_pred HHHHHHHHHHcCccEEeee-----cCHHHHHHHHHH
Confidence 7788888999999999884 678888877654
No 450
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=80.45 E-value=9.8 Score=38.55 Aligned_cols=71 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCcEEeccC-cccccCHHHHHHHHH--------HHHHhCCCCcceeEEEeecCCcchHHHHHHHHHH
Q 013498 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLIA--------DIKANTPGIENVVISTHCQNDLGLSTANTIAGAC 304 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laD-T~G~~~P~~v~~li~--------~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~ 304 (442)
+.+.++++...++|++.|.++| +.+.+.|+++.+++. .+++..|+ +++..||-++. +-+.-+.
T Consensus 177 ~~~~~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~---~~ilh~cg~~~-----~~~~~~~ 248 (335)
T cd00717 177 DATIEYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPG---VPVILFAKGAG-----GLLEDLA 248 (335)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEcCCCH-----HHHHHHH
Q ss_pred h-CCCEEEe
Q 013498 305 A-GARQVEV 312 (442)
Q Consensus 305 a-Ga~~vd~ 312 (442)
. |++.+..
T Consensus 249 ~~~~~~~s~ 257 (335)
T cd00717 249 QLGADVVGL 257 (335)
T ss_pred hcCCCEEEe
No 451
>PRK15063 isocitrate lyase; Provisional
Probab=80.41 E-value=85 Score=33.39 Aligned_cols=197 Identities=17% Similarity=0.107 Sum_probs=118.3
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCCh----HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCC----------
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSG----IHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAG---------- 229 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd----~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edas---------- 229 (442)
.+.+..+.+.++|+..|++-.-++. -|+.-|-=.+.++.++++..+...+...|.+.+.+.=.|+-
T Consensus 162 nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d 241 (428)
T PRK15063 162 NAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVD 241 (428)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccc
Confidence 3555566666789999999776542 23322212478899999887766666677653322112321
Q ss_pred ----------C---------CCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEE-----
Q 013498 230 ----------R---------SDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIS----- 285 (442)
Q Consensus 230 ----------r---------~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~----- 285 (442)
| .-.+..++-+.+..+ |||.|.+. .|.-.++++.++.+.++..+|. ..+.
T Consensus 242 ~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~E--t~~~d~ee~~~fa~~v~~~~P~---~~layn~sP 315 (428)
T PRK15063 242 ERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCE--TSTPDLEEARRFAEAIHAKFPG---KLLAYNCSP 315 (428)
T ss_pred ccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeC--CCCCCHHHHHHHHHhhcccCcc---ceeecCCCC
Confidence 1 123344444455555 99998764 2347789999999999877763 1222
Q ss_pred ---EeecCCcchH-HHH-HHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHH--HH
Q 013498 286 ---THCQNDLGLS-TAN-TIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMA--SK 358 (442)
Q Consensus 286 ---~H~HNDlGLA-~AN-alaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~l--s~ 358 (442)
|..| +-=+ +++ .-..-+.|..++=.++.|+ ++-|.++++++..+...|. ....++ .+
T Consensus 316 sfnW~~~--~~~~~~~~f~~eL~~~Gy~~~~~~la~~--ha~~~a~~~~a~~~~~~Gm------------~ay~~~Q~~e 379 (428)
T PRK15063 316 SFNWKKN--LDDATIAKFQRELGAMGYKFQFITLAGF--HSLNYSMFDLAHGYAREGM------------AAYVELQEAE 379 (428)
T ss_pred Ccccccc--cCHHHHHHHHHHHHHcCceEEEechHHH--HHHHHHHHHHHHHHHHhcc------------HHHHHHHHHH
Confidence 2222 1111 111 2334457999988888875 4678889999988887541 122221 11
Q ss_pred HHHHHhCCCCCCCCccccchhhhh
Q 013498 359 MVEEYTGLHVQPHKAIVGANAFAH 382 (442)
Q Consensus 359 ~v~~~~g~~i~~~~pivG~~aF~h 382 (442)
+.++.-|+..-.|+-.+|.+.|-.
T Consensus 380 ~~~~~~g~~~~~hq~~~G~~y~D~ 403 (428)
T PRK15063 380 FAAEERGYTAVKHQREVGTGYFDA 403 (428)
T ss_pred HHHHhcCcceeechhhccccHHHH
Confidence 223567777778888999888854
No 452
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=80.35 E-value=58 Score=33.95 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHHHhCCCCEEEEeecC-Ch----------HHHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCC-------
Q 013498 170 EAVKYAKRPRIHTFIAT-SG----------IHMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPED------- 227 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~~-Sd----------~h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~ed------- 227 (442)
+..+.+|.|.|.+..+- .- -+...++|-+.++-.+-+.+.++.+|+. |.. .|.+++.+
T Consensus 157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~ 236 (382)
T cd02931 157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ 236 (382)
T ss_pred HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence 33456899998876532 11 1333456767787788888888888875 321 23444321
Q ss_pred ---------CCCCCHHHHHHHHHHHHHcCCcEEeccCcccc-----------cCH-HHHHHHHHHHHHhCCCCcceeEEE
Q 013498 228 ---------AGRSDRKFLYEILGEVIKVGATTLNIPDTVGI-----------TMP-TEFGKLIADIKANTPGIENVVIST 286 (442)
Q Consensus 228 ---------asr~d~~~l~~~~~~~~~~Gad~I~laDT~G~-----------~~P-~~v~~li~~l~~~~p~~~~v~i~~ 286 (442)
..-.+++...++++.+.++|+|.|.+. .|. ..| ....++++.+++.+. ++|..
T Consensus 237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~----~pvi~ 310 (382)
T cd02931 237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD----VPVIM 310 (382)
T ss_pred ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCC----CCEEE
Confidence 112357888999999999999999874 221 111 122456777888763 34443
Q ss_pred eecCCcchHHHHHHHHHHhC-CCEE
Q 013498 287 HCQNDLGLSTANTIAGACAG-ARQV 310 (442)
Q Consensus 287 H~HNDlGLA~ANalaAl~aG-a~~v 310 (442)
-.--+ ....+..+++.| ||.|
T Consensus 311 ~G~i~---~~~~~~~~l~~g~~D~V 332 (382)
T cd02931 311 AGRME---DPELASEAINEGIADMI 332 (382)
T ss_pred eCCCC---CHHHHHHHHHcCCCCee
Confidence 22211 234566777776 5555
No 453
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=80.31 E-value=42 Score=34.93 Aligned_cols=17 Identities=18% Similarity=0.149 Sum_probs=9.6
Q ss_pred HHHHhHcCCCEEEEccC
Q 013498 107 ARQLAKLGVDIIEAGFP 123 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~p 123 (442)
++.+.++|++.|.+..|
T Consensus 81 i~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 81 IDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHhCCcCEEEEEEc
Confidence 34444566666666554
No 454
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=80.28 E-value=31 Score=35.90 Aligned_cols=78 Identities=22% Similarity=0.354 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEcc-CCCCCCCHHHHHHHHHHHHHc-CCcEEeccCcccccCHHHHHHHHHHHHH
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEFSP-EDAGRSDRKFLYEILGEVIKV-GATTLNIPDTVGITMPTEFGKLIADIKA 274 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f~~-edasr~d~~~l~~~~~~~~~~-Gad~I~laDT~G~~~P~~v~~li~~l~~ 274 (442)
+|.+++. +.++.+.+.|...|.|+. |-.-|. .+.++++.+.+. |...+.+ .|.|.+.++.+. .+++
T Consensus 90 ls~eei~----~~i~~~~~~Gv~~I~~tGGEPllr~---dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~----~L~~ 157 (373)
T PLN02951 90 LSQDEIV----RLAGLFVAAGVDKIRLTGGEPTLRK---DIEDICLQLSSLKGLKTLAM-TTNGITLSRKLP----RLKE 157 (373)
T ss_pred CCHHHHH----HHHHHHHHCCCCEEEEECCCCcchh---hHHHHHHHHHhcCCCceEEE-eeCcchHHHHHH----HHHh
Confidence 4555544 345555667876677643 322232 355667766665 6655555 688888775543 3333
Q ss_pred hCCCCcceeEEEee
Q 013498 275 NTPGIENVVISTHC 288 (442)
Q Consensus 275 ~~p~~~~v~i~~H~ 288 (442)
. ++..+.|+++.
T Consensus 158 a--Gld~VnISLDs 169 (373)
T PLN02951 158 A--GLTSLNISLDT 169 (373)
T ss_pred C--CCCeEEEeecc
Confidence 2 12236677665
No 455
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=80.24 E-value=73 Score=32.55 Aligned_cols=98 Identities=10% Similarity=0.076 Sum_probs=59.1
Q ss_pred HHhCCCCEEEEeecCC-hHHHHHHhCC--CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCC
Q 013498 172 VKYAKRPRIHTFIATS-GIHMEHKLRK--TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGA 248 (442)
Q Consensus 172 l~~~g~~~v~i~~~~S-d~h~~~~l~~--s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Ga 248 (442)
+++.+. .|.+.+-.. +.|- .++. ......+++.+.++.+++.|+. +.+.. -.++.+.+.+.++++.+.+.|+
T Consensus 112 l~~~~~-~v~iSlDg~~~~hd--~~R~~~~g~~~f~~v~~~i~~l~~~~~~-~~i~~-~v~~~n~~~l~~i~~~~~~~g~ 186 (370)
T PRK13758 112 LSENKF-LVGLSMDGPKEIHN--LNRKDCCGLDTFSKVERAAELFKKYKVE-FNILC-VVTSNTARHVNKIYKYFKEKDF 186 (370)
T ss_pred HHHcCc-eEEEeecCCHHHhc--cccCCCCCCccHHHHHHHHHHHHHhCCC-ceEEE-EeccccccCHHHHHHHHHHcCC
Confidence 344454 666665443 3343 2332 1235577788888888888875 33322 1234556678888888889999
Q ss_pred cEEecc---Cccc--------ccCHHHHHHHHHHHHH
Q 013498 249 TTLNIP---DTVG--------ITMPTEFGKLIADIKA 274 (442)
Q Consensus 249 d~I~la---DT~G--------~~~P~~v~~li~~l~~ 274 (442)
+.+.+. +..| .+.|.+..+++..+.+
T Consensus 187 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~ 223 (370)
T PRK13758 187 KFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD 223 (370)
T ss_pred CeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence 877552 2222 3678777776666544
No 456
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=80.15 E-value=8.9 Score=39.07 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHc-CCcEEeccCcccc-----cCHHHHHHHHH----HHHHhCCCCcceeEEEeecCCcchHHHHHHHH-
Q 013498 234 KFLYEILGEVIKV-GATTLNIPDTVGI-----TMPTEFGKLIA----DIKANTPGIENVVISTHCQNDLGLSTANTIAG- 302 (442)
Q Consensus 234 ~~l~~~~~~~~~~-Gad~I~laDT~G~-----~~P~~v~~li~----~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA- 302 (442)
+.+.++++...++ |+|.|.+.|+.|. +.|+.+++++. ++.+.+......++.+|...+. .+-+..
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~~----~~~l~~~ 230 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGAA----ASLVPSM 230 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCCc----HHHHHHH
Confidence 4566667777777 9999999998776 79998876652 2222221100256888888653 122333
Q ss_pred HHhCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 303 ACAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 303 l~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
.+.|++.+++-... .+++++...+.
T Consensus 231 ~e~g~dvl~~d~~~-------~dl~eak~~~g 255 (321)
T cd03309 231 AEMGVDSWNVVMTA-------NNTAELRRLLG 255 (321)
T ss_pred HHcCCCEEEecCCC-------CCHHHHHHHhC
Confidence 34599988743321 26666544443
No 457
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=80.12 E-value=69 Score=32.18 Aligned_cols=82 Identities=16% Similarity=0.006 Sum_probs=49.4
Q ss_pred HHHHHhCCCC-EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCC-CCCCHHHHHHHHHHHHHc
Q 013498 169 WEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDA-GRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 169 ~e~l~~~g~~-~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~eda-sr~d~~~l~~~~~~~~~~ 246 (442)
++.++.+|.+ +|.+=+-+.+-.....+++.. ..+.+.++++.+++.|+. |+..+..+ .--+.+.+.+.++.+.+.
T Consensus 129 L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~--t~~~~~~ai~~l~~~gi~-v~~~lI~GlPget~e~~~~t~~~l~~l 205 (302)
T TIGR01212 129 LAEYVERGYEVWVELGLQTAHDKTLKKINRGH--DFACYVDAVKRARKRGIK-VCSHVILGLPGEDREEMMETAKIVSLL 205 (302)
T ss_pred HHHhhhCCceEEEEEccCcCCHHHHHHHcCcC--hHHHHHHHHHHHHHcCCE-EEEeEEECCCCCCHHHHHHHHHHHHhc
Confidence 3334445663 455533333334445565532 245667889999999985 55433211 123457788899999999
Q ss_pred CCcEEec
Q 013498 247 GATTLNI 253 (442)
Q Consensus 247 Gad~I~l 253 (442)
+++.|.+
T Consensus 206 ~~d~i~i 212 (302)
T TIGR01212 206 DVDGIKI 212 (302)
T ss_pred CCCEEEE
Confidence 9887664
No 458
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=79.96 E-value=20 Score=37.27 Aligned_cols=111 Identities=10% Similarity=0.164 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCC-hhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHH-HHh
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAAS-KEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEA-VKY 174 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~-~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~-l~~ 174 (442)
.++.+...++++.-.+.||.+||.++|..+ ..+.-.=+.|++.....+ .+...+..|---..+|+++.++. |..
T Consensus 30 ~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv----~LaTKlp~~~~~~~edm~r~fneqLek 105 (391)
T COG1453 30 SIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKV----KLATKLPSWPVKDREDMERIFNEQLEK 105 (391)
T ss_pred CccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceE----EEEeecCCccccCHHHHHHHHHHHHHH
Confidence 467788889999999999999999998632 223222233444321111 12223333444467888887654 556
Q ss_pred CCCCEEEEeecCChHHHHHHhCCCHHHHHHH--HHHHHHHHHHcCC
Q 013498 175 AKRPRIHTFIATSGIHMEHKLRKTKQQVVEI--ARSMVKFARSLGC 218 (442)
Q Consensus 175 ~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~--~~~~v~~ar~~G~ 218 (442)
.+.|.+.++. .+.++...=+.+++ ..+.++.+|+.|.
T Consensus 106 l~~Dy~D~yl-------iH~l~~e~~~k~~~~g~~df~~kak~eGk 144 (391)
T COG1453 106 LGTDYIDYYL-------IHGLNTETWEKIERLGVFDFLEKAKAEGK 144 (391)
T ss_pred hCCchhhhhh-------hccccHHHHHHHHccChHHHHHHHHhcCc
Confidence 7888775542 23333311111222 3677899999995
No 459
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=79.77 E-value=5.4 Score=40.34 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCcEEeccCcccc---cCHHHHHHHH----HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH-HhC
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVGI---TMPTEFGKLI----ADIKANTPGIENVVISTHCQNDLGLSTANTIAGA-CAG 306 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G~---~~P~~v~~li----~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl-~aG 306 (442)
.+.++++...++|||.|.++|+.+. +.|+++.+++ +.+.+.+.. .++.+|.+.+. .+.+..+ +.|
T Consensus 172 ~~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~---~~~ilh~cG~~----~~~l~~~~~~g 244 (326)
T cd03307 172 ACIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG---CPTILHICGNT----TPILEYIAQCG 244 (326)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc---CCcEEEECCCC----hhHHHHHHHcC
Confidence 3456666677889999999998864 3899988776 233333321 35678866553 2334433 458
Q ss_pred CCEEEecccccccccCcccHHHHHHHH
Q 013498 307 ARQVEVTINGIGERAGNASLEEVVMAF 333 (442)
Q Consensus 307 a~~vd~Tv~GlGeraGNa~lEevv~~L 333 (442)
++.++. ..+ .+++++...+
T Consensus 245 ~d~~~~-----d~~---~dl~e~~~~~ 263 (326)
T cd03307 245 FDGISV-----DEK---VDVKTAKEIV 263 (326)
T ss_pred CCeecc-----ccc---CCHHHHHHHc
Confidence 887542 222 3677665444
No 460
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=79.75 E-value=32 Score=33.29 Aligned_cols=110 Identities=11% Similarity=0.071 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE-c--cCCC---CC-------
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF-S--PEDA---GR------- 230 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f-~--~eda---sr------- 230 (442)
+++..++.++.+|.+.|.+..+.. .+ ..++-+.+++.|++ +.. + ..+. .+
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~~~~~---------~~-------~~~~~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFMFPYD---------YD-------IEELKQVLASNKLE-HTLHNLPAGDWAAGERGIACIPG 78 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCC---------CC-------HHHHHHHHHHcCCc-EEEEcCCCCccccCcCccccCCC
Confidence 566667777778999999854321 12 33444556789986 442 2 1110 10
Q ss_pred -C--CHHHHHHHHHHHHHcCCcEEeccC--cccccCHHHH-HHHHHHHHHh---CCCCcceeEEEeecCC
Q 013498 231 -S--DRKFLYEILGEVIKVGATTLNIPD--TVGITMPTEF-GKLIADIKAN---TPGIENVVISTHCQND 291 (442)
Q Consensus 231 -~--d~~~l~~~~~~~~~~Gad~I~laD--T~G~~~P~~v-~~li~~l~~~---~p~~~~v~i~~H~HND 291 (442)
. ..+.+.+.++.+.+.|+..|.+.- ..+-..+.+. ..+++.+++. ..+ .++.|.+|.||-
T Consensus 79 ~~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~Gv~l~lE~~n~ 147 (258)
T PRK09997 79 REEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMK-EDILLLIEPINH 147 (258)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEEEEEeCCC
Confidence 0 124578888889999999887641 1112233442 3333333321 111 148899998874
No 461
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=79.73 E-value=8.1 Score=38.80 Aligned_cols=105 Identities=13% Similarity=0.130 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE-Eecc-CcccccCHHHHHHHHHHHHHhCCCCcc
Q 013498 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT-LNIP-DTVGITMPTEFGKLIADIKANTPGIEN 281 (442)
Q Consensus 204 ~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~-I~la-DT~G~~~P~~v~~li~~l~~~~p~~~~ 281 (442)
..++++.+.|++.|+.--.|++ .+.+.+..+++++.+.+... |.++ .+........+..++..+.++..
T Consensus 3 v~~~~ll~~A~~~~yAV~AfN~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~---- 73 (287)
T PF01116_consen 3 VNMKELLKKAKEGGYAVPAFNV-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS---- 73 (287)
T ss_dssp HHHHHHHHHHHHHT-BEEEEE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST----
T ss_pred ccHHHHHHHHHHCCCeEEEEee-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC----
Confidence 4567889999999986456776 45689999999999998764 4443 34455555677888888888873
Q ss_pred eeEEEeecCCcchHHHHHHHHHHhCCCE--EEeccccccc
Q 013498 282 VVISTHCQNDLGLSTANTIAGACAGARQ--VEVTINGIGE 319 (442)
Q Consensus 282 v~i~~H~HNDlGLA~ANalaAl~aGa~~--vd~Tv~GlGe 319 (442)
+||.+|. |-|........|+++|.+- +|+|-..+-|
T Consensus 74 vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee 111 (287)
T PF01116_consen 74 VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE 111 (287)
T ss_dssp SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH
T ss_pred CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH
Confidence 7787665 4455588899999999987 5888665554
No 462
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=79.51 E-value=12 Score=38.29 Aligned_cols=70 Identities=23% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecc
Q 013498 236 LYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTI 314 (442)
Q Consensus 236 l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv 314 (442)
..+.++.+.++|++.|.+.=+.| .+....++|+.+++..|+ ++|.+ .|- .....+..++++||+.|-+++
T Consensus 95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~---v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPN---VDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCC---ceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 34677888899999887633334 446788899999998873 56665 222 445667888999999998754
No 463
>PRK04302 triosephosphate isomerase; Provisional
Probab=79.48 E-value=47 Score=31.69 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=66.9
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G 247 (442)
..+.++.+|++.|-+- -|+.. .. .+.+.+.++.++++|+. +.++..+ .+ .++.+.+.|
T Consensus 77 ~~~~l~~~G~~~vii~--~ser~------~~----~~e~~~~v~~a~~~Gl~-~I~~v~~-----~~----~~~~~~~~~ 134 (223)
T PRK04302 77 LPEAVKDAGAVGTLIN--HSERR------LT----LADIEAVVERAKKLGLE-SVVCVNN-----PE----TSAAAAALG 134 (223)
T ss_pred HHHHHHHcCCCEEEEe--ccccc------cC----HHHHHHHHHHHHHCCCe-EEEEcCC-----HH----HHHHHhcCC
Confidence 3555666799887543 33210 12 23366788999999996 4454322 22 233456778
Q ss_pred CcEEecc--Ccccc------cCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHH-HHhCCCEE
Q 013498 248 ATTLNIP--DTVGI------TMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACAGARQV 310 (442)
Q Consensus 248 ad~I~la--DT~G~------~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA-l~aGa~~v 310 (442)
.+.|++- +..|. ..|+.+.++++.+++..++ ++|-. ..|....|.... .+.|++.|
T Consensus 135 ~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~---~pvi~----GggI~~~e~~~~~~~~gadGv 199 (223)
T PRK04302 135 PDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPD---VKVLC----GAGISTGEDVKAALELGADGV 199 (223)
T ss_pred CCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCC---CEEEE----ECCCCCHHHHHHHHcCCCCEE
Confidence 8888753 22222 5799999999999975433 33332 145545555544 34787765
No 464
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=79.38 E-value=28 Score=33.34 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHH-HHHhCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWE-AVKYAK 176 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e-~l~~~g 176 (442)
.+.++.+++++.|.. .++.+|+|.|-....-.+.++.+.+..++. +.++-+ ...|+..... .+..+|
T Consensus 13 ~~~~~a~~l~~~l~~-~v~~~kvG~~l~~~~G~~~i~~lk~~~~~~--------~v~~DL---K~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 13 QDLESAIEDAKKVAE-EVDIIEVGTILLLAEGMKAVRVLRALYPDK--------IIVADT---KIADAGKILAKMAFEAG 80 (216)
T ss_pred CCHHHHHHHHHHccc-cCCEEEEChHHHHHhCHHHHHHHHHHCCCC--------EEEEEE---eecCCcHHHHHHHHHCC
Confidence 467889999999987 479999998744333346777777753221 122222 2234433322 344679
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHH
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLY 237 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~ 237 (442)
++.+.+.....+ +++.++++.+++.|.. +.+..- .+ ++.+.+.
T Consensus 81 ad~vTvH~~a~~---------------~~i~~~~~~~~~~g~~-~~V~ll-ts-~~~~~l~ 123 (216)
T PRK13306 81 ADWVTVICAAHI---------------PTIKAALKVAKEFNGE-IQIELY-GN-WTWEQAQ 123 (216)
T ss_pred CCEEEEeCCCCH---------------HHHHHHHHHHHHcCCE-EEEEEC-CC-CCHHHHH
Confidence 998877654332 4455677777778863 555442 12 2555553
No 465
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=79.30 E-value=5.1 Score=40.95 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCcEEeccC-cccccCHHHHHHHH--------HHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH-
Q 013498 234 KFLYEILGEVIKVGATTLNIPD-TVGITMPTEFGKLI--------ADIKANTPGIENVVISTHCQNDLGLSTANTIAGA- 303 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laD-T~G~~~P~~v~~li--------~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl- 303 (442)
+.+.++++...++||+.|.++| +.+.+.|+++.+++ +.+++..| +.++-.||.|... .+..+
T Consensus 186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~---~~~ilh~cg~~~~-----~~~~~~ 257 (346)
T PRK00115 186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHP---DVPVILFGKGAGE-----LLEAMA 257 (346)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEcCCcHH-----HHHHHH
Confidence 3455666677789999999999 55778888876554 33333322 2445556665332 23333
Q ss_pred HhCCCEEEecccccccccCcccHHHHHHHHH
Q 013498 304 CAGARQVEVTINGIGERAGNASLEEVVMAFK 334 (442)
Q Consensus 304 ~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~ 334 (442)
+.|++.++.-- +.++++....+.
T Consensus 258 ~~~~~~is~d~--------~~dl~~~k~~~g 280 (346)
T PRK00115 258 ETGADVVGLDW--------TVDLAEARRRVG 280 (346)
T ss_pred hcCCCEEeeCC--------CCCHHHHHHHcC
Confidence 34877764322 256766654443
No 466
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.16 E-value=18 Score=35.72 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=54.0
Q ss_pred CCCC-CCHHHHHHHHHHHHHcCCcEEecc------CcccccCHHHHHHH---HHHHHHhCCCCcceeEEEeecCCcchHH
Q 013498 227 DAGR-SDRKFLYEILGEVIKVGATTLNIP------DTVGITMPTEFGKL---IADIKANTPGIENVVISTHCQNDLGLST 296 (442)
Q Consensus 227 dasr-~d~~~l~~~~~~~~~~Gad~I~la------DT~G~~~P~~v~~l---i~~l~~~~p~~~~v~i~~H~HNDlGLA~ 296 (442)
|.++ .+.+.+.+.++...+.||+.|-+. +..++..-+++.++ |+.+++.+ +++|++=+=| .
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~----~~plSIDT~~-----~ 86 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL----DVLISVDTFR-----A 86 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC----CCcEEEeCCC-----H
Confidence 4454 688999999999999999999884 33344444555554 56666654 2667775544 3
Q ss_pred HHHHHHHHhCCCEEEec
Q 013498 297 ANTIAGACAGARQVEVT 313 (442)
Q Consensus 297 ANalaAl~aGa~~vd~T 313 (442)
.-..+|+++|+++|+.-
T Consensus 87 ~v~e~al~~G~~iINdi 103 (257)
T cd00739 87 EVARAALEAGADIINDV 103 (257)
T ss_pred HHHHHHHHhCCCEEEeC
Confidence 44568899999999754
No 467
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=79.15 E-value=80 Score=32.36 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHcCCcEEeccCcc
Q 013498 231 SDRKFLYEILGEVIKVGATTLNIPDTV 257 (442)
Q Consensus 231 ~d~~~l~~~~~~~~~~Gad~I~laDT~ 257 (442)
.+.+.+.++++.+.++|+|.|.+..|+
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 445668899999999999999998876
No 468
>PRK02227 hypothetical protein; Provisional
Probab=79.15 E-value=67 Score=31.47 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=87.8
Q ss_pred HHHHhHcCCCEEEEccCCCCh---hHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCEEEEe
Q 013498 107 ARQLAKLGVDIIEAGFPAASK---EDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPRIHTF 183 (442)
Q Consensus 107 a~~L~~~GV~~IEvG~p~~~~---~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~v~i~ 183 (442)
+....+.|.|+|.+=-|..+. -.-..++++.+.++...+ ....+-.+ ......+-.+......+|++.|.+=
T Consensus 13 A~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~p----vSAtiGD~-p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 13 ALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKP----VSATIGDV-PYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCC----ceeeccCC-CCCchHHHHHHHHHHhhCCCEEEEc
Confidence 445567899999996553211 123456666666543211 11112111 2233445555444455799988763
Q ss_pred ecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCC--eEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCccc---
Q 013498 184 IATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCD--DVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVG--- 258 (442)
Q Consensus 184 ~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~--~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G--- 258 (442)
+.- ..+.++.++.+...++..++..-. .|.+..-|..|.+--.-.++.+.+.++|.+.+-| ||.+
T Consensus 88 l~~---------~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~Ml-DTa~Kdg 157 (238)
T PRK02227 88 LYG---------GKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAML-DTAIKDG 157 (238)
T ss_pred CCC---------CCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEE-ecccCCC
Confidence 321 124456666666666666655332 3445555655553222235677778899998877 8874
Q ss_pred -----ccCHHHHHHHHHHHHHh
Q 013498 259 -----ITMPTEFGKLIADIKAN 275 (442)
Q Consensus 259 -----~~~P~~v~~li~~l~~~ 275 (442)
.+.+.+..+++...++.
T Consensus 158 ~~Lfd~l~~~~L~~Fv~~ar~~ 179 (238)
T PRK02227 158 KSLFDHMDEEELAEFVAEARSH 179 (238)
T ss_pred cchHhhCCHHHHHHHHHHHHHc
Confidence 47778888888888764
No 469
>PLN02591 tryptophan synthase
Probab=79.05 E-value=69 Score=31.53 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=83.1
Q ss_pred HHHHHHhCCCCEEEEeecCChH-----------HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCCeEEEccCCCCCCCH--
Q 013498 168 AWEAVKYAKRPRIHTFIATSGI-----------HMEHKLRKTKQQVVEIARSMVKFARSL-GCDDVEFSPEDAGRSDR-- 233 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~-----------h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~~V~f~~edasr~d~-- 233 (442)
.++++...|++.+.+=+|-||. +.--+-|.+.++.++.+ +..|+. ....+-+ +..++
T Consensus 21 ~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~ilm-----~Y~N~i~ 91 (250)
T PLN02591 21 ALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPIVLF-----TYYNPIL 91 (250)
T ss_pred HHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCEEEE-----ecccHHH
Confidence 3444555678877777777762 11122356766666544 444432 2221211 22332
Q ss_pred -HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEe
Q 013498 234 -KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEV 312 (442)
Q Consensus 234 -~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~ 312 (442)
-=+.++++.+.++|++.+.++| +.+++..++...++++ + +.+-+=.--+.--.-...+++...|.=+.=
T Consensus 92 ~~G~~~F~~~~~~aGv~GviipD----LP~ee~~~~~~~~~~~--g---l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~V- 161 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVPD----LPLEETEALRAEAAKN--G---IELVLLTTPTTPTERMKAIAEASEGFVYLV- 161 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHc--C---CeEEEEeCCCCCHHHHHHHHHhCCCcEEEe-
Confidence 1345778899999999999999 5678899999988875 2 223333322333334445555555655432
Q ss_pred cccccc-cccC-cccHHHHHHHHHh
Q 013498 313 TINGIG-ERAG-NASLEEVVMAFKC 335 (442)
Q Consensus 313 Tv~GlG-eraG-Na~lEevv~~L~~ 335 (442)
|..|.- .|++ ...+++.+..++.
T Consensus 162 s~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 162 SSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred eCCCCcCCCcCCchhHHHHHHHHHh
Confidence 334433 3555 3456666666665
No 470
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=78.92 E-value=18 Score=34.31 Aligned_cols=91 Identities=14% Similarity=0.127 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEe
Q 013498 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTH 287 (442)
Q Consensus 208 ~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H 287 (442)
..+++|+++|+..+.+..- ....-.+|=.++++.+.+.++|.|.|+==.=++.|.-+..+-.++....|..-..-=|.|
T Consensus 41 ~~lerA~~~gIpt~~~~~k-~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNIHPSLLP~f~G~h 119 (200)
T COG0299 41 YALERAAKAGIPTVVLDRK-EFPSREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNIHPSLLPAFPGLH 119 (200)
T ss_pred HHHHHHHHcCCCEEEeccc-cCCCHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEecCcccccCCCCch
Confidence 4678899999985555441 122223466778899999999999999888888887776665555433332100112355
Q ss_pred ecCCcchHHHHHHHHHHhCCCE
Q 013498 288 CQNDLGLSTANTIAGACAGARQ 309 (442)
Q Consensus 288 ~HNDlGLA~ANalaAl~aGa~~ 309 (442)
.| ..|+++|.+.
T Consensus 120 ~~----------~~A~~aG~k~ 131 (200)
T COG0299 120 AH----------EQALEAGVKV 131 (200)
T ss_pred HH----------HHHHHcCCCc
Confidence 55 4788888774
No 471
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=78.86 E-value=60 Score=30.77 Aligned_cols=151 Identities=21% Similarity=0.314 Sum_probs=77.5
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccCC----C----ChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFPA----A----SKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIK 166 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~----~----~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~ 166 (442)
+..++.++.++=++.+.+.|-++|++|.-+ . ..++++.+..+.+.+..... . .| + ..=-.+.+-++
T Consensus 13 ~~~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~---~-~p-l-SIDT~~~~v~~ 86 (210)
T PF00809_consen 13 GRKFSEDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENP---D-VP-L-SIDTFNPEVAE 86 (210)
T ss_dssp TCHHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHT---T-SE-E-EEEESSHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCC---C-eE-E-EEECCCHHHHH
Confidence 355667777777999999999999998432 1 12345544443333221000 0 11 2 22234666777
Q ss_pred HHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCC--C--CCCCH----HHHHH
Q 013498 167 TAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPED--A--GRSDR----KFLYE 238 (442)
Q Consensus 167 ~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~ed--a--sr~d~----~~l~~ 238 (442)
.+++. |.+.|.-..+..+ ..++++.+++.|.. +...+.+ . -..++ +.+.+
T Consensus 87 ~aL~~----g~~~ind~~~~~~-----------------~~~~~~l~a~~~~~-vV~m~~~~~~~~~~~~~~~~~~~~~~ 144 (210)
T PF00809_consen 87 AALKA----GADIINDISGFED-----------------DPEMLPLAAEYGAP-VVLMHSDGNPKGMPETADYRLDIAEE 144 (210)
T ss_dssp HHHHH----TSSEEEETTTTSS-----------------STTHHHHHHHHTSE-EEEESESSETTTTTSSHHHSHSHHHH
T ss_pred HHHHc----CcceEEecccccc-----------------cchhhhhhhcCCCE-EEEEecccccccccccchhhhhHHHH
Confidence 77765 7776654333221 23567778888885 4443323 1 11111 22333
Q ss_pred HHH-------HHHHcCC--cEEeccCccccc-CHHHHHHHHHHHH
Q 013498 239 ILG-------EVIKVGA--TTLNIPDTVGIT-MPTEFGKLIADIK 273 (442)
Q Consensus 239 ~~~-------~~~~~Ga--d~I~laDT~G~~-~P~~v~~li~~l~ 273 (442)
+.+ .+.++|+ +.|.+==-+|.. .+.+-.++++.++
T Consensus 145 i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~ 189 (210)
T PF00809_consen 145 IIEFLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE 189 (210)
T ss_dssp HHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence 443 4455898 667663334543 3455555555444
No 472
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=78.86 E-value=6.7 Score=38.11 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEE----ccCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 013498 203 VEIARSMVKFARSLGCDDVEF----SPEDAGRSDRKFLYEILGEVIKVGATTL 251 (442)
Q Consensus 203 l~~~~~~v~~ar~~G~~~V~f----~~edasr~d~~~l~~~~~~~~~~Gad~I 251 (442)
++.+.+.|+.+|+ +.+.|.+ +.|.. ..+.++..++++.++++|||.|
T Consensus 170 ~~~i~~~i~~~r~-~~D~vIv~~HwG~e~~-~~p~~~q~~~a~~lidaGaDiI 220 (250)
T PF09587_consen 170 IERIKEDIREARK-KADVVIVSLHWGIEYE-NYPTPEQRELARALIDAGADII 220 (250)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeccCCCCC-CCCCHHHHHHHHHHHHcCCCEE
Confidence 4777888888884 4443333 33443 3345677789999999999876
No 473
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=78.81 E-value=48 Score=32.86 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEcc-------------CCCChhHHHHHHHHHHHhcccc-cccCCccceEeeecccchh
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGF-------------PAASKEDFEAVRTIAKEVGNAV-DAESGYVPVICGLSRCNER 163 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~-------------p~~~~~d~e~v~~l~~~~~~~~-~~~~~l~~~i~~~~r~~~~ 163 (442)
+.+.--...++.++++|+|.|-||- |.+.++..-..+..++-.++.+ -.+ .| +..+.-..++
T Consensus 19 ~lTAYD~~~A~~~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~D---mP-F~sy~~s~~~ 94 (268)
T COG0413 19 MLTAYDYPFAKLFDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVAD---LP-FGSYEVSPEQ 94 (268)
T ss_pred EEeccccHHHhhhhhcCCcEEEEeccHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeC---CC-CcccCCCHHH
Confidence 3334445678999999999999983 2122222333344444333321 000 01 1112223455
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEE----EccCC---------CCC
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVE----FSPED---------AGR 230 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~----f~~ed---------asr 230 (442)
.++.|.+.+++.|.+-|.+--. +.+.+.|++..+.|++ |+ +.+.. -+|
T Consensus 95 a~~nA~r~~ke~gA~aVKlEGG------------------~~~~~~i~~L~~~gIP-V~gHiGLtPQ~v~~~GGykvqGr 155 (268)
T COG0413 95 ALKNAARLMKEAGADAVKLEGG------------------EEMAETIKRLTERGIP-VMGHIGLTPQSVNWLGGYKVQGR 155 (268)
T ss_pred HHHHHHHHHHHhCCCEEEEcCC------------------HHHHHHHHHHHHcCCc-eEEEecCChhhhhccCCeeeecC
Confidence 6788888888889998886432 3455778888889987 32 22211 123
Q ss_pred C--CHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHH
Q 013498 231 S--DRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADI 272 (442)
Q Consensus 231 ~--d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l 272 (442)
. +.+.+.+-++++.++||-.+.|- +.|.++.+.|..-
T Consensus 156 ~~~~a~~l~~dA~ale~AGaf~ivlE-----~Vp~~lA~~IT~~ 194 (268)
T COG0413 156 TEESAEKLLEDAKALEEAGAFALVLE-----CVPAELAKEITEK 194 (268)
T ss_pred CHHHHHHHHHHHHHHHhcCceEEEEe-----ccHHHHHHHHHhc
Confidence 3 34577788889999999998884 6788888777653
No 474
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.76 E-value=19 Score=34.70 Aligned_cols=164 Identities=15% Similarity=0.172 Sum_probs=91.4
Q ss_pred HHHHHHHhHcCCCEEEE----cc--CC--CChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 104 LDIARQLAKLGVDIIEA----GF--PA--ASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 104 l~ia~~L~~~GV~~IEv----G~--p~--~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
.+-++.|.+.|++.+-+ |. |. -++ +.++.+.+...+ + + +-++-.. ++-++.++.+..+
T Consensus 15 ~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~---~~i~~i~~~~~~-~-------~-~dvHLMv--~~p~~~i~~~~~~ 80 (220)
T PRK08883 15 GEDVEKVLAAGADVVHFDVMDNHYVPNLTFGA---PICKALRDYGIT-A-------P-IDVHLMV--KPVDRIIPDFAKA 80 (220)
T ss_pred HHHHHHHHHcCCCEEEEecccCcccCccccCH---HHHHHHHHhCCC-C-------C-EEEEecc--CCHHHHHHHHHHh
Confidence 34567778889998766 53 32 233 455555543101 0 1 1111111 1223344444556
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec-
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI- 253 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l- 253 (442)
|.+.|.+..-.. ....+.++++|+.|++. +.+++ .++.+.+..+++.+ |.|.+
T Consensus 81 gad~i~~H~Ea~----------------~~~~~~l~~ik~~g~k~GlalnP----~Tp~~~i~~~l~~~-----D~vlvM 135 (220)
T PRK08883 81 GASMITFHVEAS----------------EHVDRTLQLIKEHGCQAGVVLNP----ATPLHHLEYIMDKV-----DLILLM 135 (220)
T ss_pred CCCEEEEcccCc----------------ccHHHHHHHHHHcCCcEEEEeCC----CCCHHHHHHHHHhC-----CeEEEE
Confidence 899877643321 33556888999999862 33444 35777777666533 43332
Q ss_pred ---cCcccccCHHHHHHHHHHHHHhCCCCc-ceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 254 ---PDTVGITMPTEFGKLIADIKANTPGIE-NVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 254 ---aDT~G~~~P~~v~~li~~l~~~~p~~~-~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.+.|-..=....+.++.+++..+... +++|++ |-|.-..|.-..+++||+.+
T Consensus 136 tV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v 192 (220)
T PRK08883 136 SVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF 192 (220)
T ss_pred EecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence 233343222344446666666543100 255665 88999999999999999997
No 475
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=78.64 E-value=86 Score=32.42 Aligned_cols=110 Identities=14% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEE-ccCCCCCCCHHHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHh
Q 013498 197 KTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKAN 275 (442)
Q Consensus 197 ~s~~e~l~~~~~~v~~ar~~G~~~V~f-~~edasr~d~~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~ 275 (442)
++.+|+++ .++.+++.|...+.+ +.+...+.+.+++.++++.+.+... .+.+ .++.++.+++. .|++.
T Consensus 103 Ls~eEI~~----~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p-~i~I--ei~~lt~e~~~----~Lk~a 171 (366)
T TIGR02351 103 LNEEEIER----EIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFS-SLAI--EVQPLNEEEYK----KLVEA 171 (366)
T ss_pred CCHHHHHH----HHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC-cccc--ccccCCHHHHH----HHHHc
Confidence 46555544 455566678765544 3455666778888888888876531 1111 12345665554 34433
Q ss_pred CCCCcceeEEEeec--------------CCcchHHHHHHHHHHhCCCE-EEeccccccc
Q 013498 276 TPGIENVVISTHCQ--------------NDLGLSTANTIAGACAGARQ-VEVTINGIGE 319 (442)
Q Consensus 276 ~p~~~~v~i~~H~H--------------NDlGLA~ANalaAl~aGa~~-vd~Tv~GlGe 319 (442)
++..+.++..+- .++---+..--.|.++|.+. =-+-+.||||
T Consensus 172 --Gv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e 228 (366)
T TIGR02351 172 --GLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDD 228 (366)
T ss_pred --CCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCch
Confidence 222334433331 23444455555666778773 3466777876
No 476
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=78.56 E-value=88 Score=32.50 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=116.3
Q ss_pred cCCCCCC--CCCCHHHHHHHHHHHhHcCCCEEEEccCCCCh--------h-------------HHHHHHHHHHHhccccc
Q 013498 89 DGEQSPG--ATLTSKEKLDIARQLAKLGVDIIEAGFPAASK--------E-------------DFEAVRTIAKEVGNAVD 145 (442)
Q Consensus 89 DG~Q~~g--~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~--------~-------------d~e~v~~l~~~~~~~~~ 145 (442)
.+.+..+ ..++.++...+++.-.+.+-+.|=-.+|.... . -...++.+++..
T Consensus 24 ~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a----- 98 (357)
T TIGR01520 24 ENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHY----- 98 (357)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHC-----
Confidence 3444443 24788999999999999999977544442211 1 122444444432
Q ss_pred ccCCccceEeeeccc-ch--hhHHHHHHHHH----hCC---CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHH
Q 013498 146 AESGYVPVICGLSRC-NE--RDIKTAWEAVK----YAK---RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARS 215 (442)
Q Consensus 146 ~~~~l~~~i~~~~r~-~~--~dI~~a~e~l~----~~g---~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~ 215 (442)
-+|+..=+=-+ +. +.|++++++.. ..| ...|.+ -.| ..+.+|+++..++.+++|+.
T Consensus 99 ----~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMi--DgS--------~lpfeENI~~TrevVe~Ah~ 164 (357)
T TIGR01520 99 ----GVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMI--DLS--------EEPIEENIEICVKYLKRMAK 164 (357)
T ss_pred ----CCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEe--eCC--------CCCHHHHHHHHHHHHHHHHH
Confidence 23433222222 33 45788887631 122 555433 233 34678999999999999999
Q ss_pred cCCCeEEE------ccCC----------CCCCCHHHHHHHHHHHH-HcCCcEEe--ccCcccccC---HHHHHHHHHHHH
Q 013498 216 LGCDDVEF------SPED----------AGRSDRKFLYEILGEVI-KVGATTLN--IPDTVGITM---PTEFGKLIADIK 273 (442)
Q Consensus 216 ~G~~~V~f------~~ed----------asr~d~~~l~~~~~~~~-~~Gad~I~--laDT~G~~~---P~~v~~li~~l~ 273 (442)
.|.. |+- +.|| ...+||+...+++++-. .-|+|.+- +.-.=|... |.--.++++.|+
T Consensus 165 ~Gvs-VEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~ 243 (357)
T TIGR01520 165 IKMW-LEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQ 243 (357)
T ss_pred cCCE-EEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHH
Confidence 9984 532 2233 22689998888887652 33777544 434445543 444556677764
Q ss_pred ----HhC--CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 274 ----ANT--PGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 274 ----~~~--p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
+.+ |...+++|.+|. .-|+.--+-..|+..|+.-|+
T Consensus 244 ~~~~~~~~vP~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KIN 285 (357)
T TIGR01520 244 EYVSEKLGLPAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMN 285 (357)
T ss_pred HHHHHhcCCCcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 333 211124477665 445555666677777777664
No 477
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=78.50 E-value=18 Score=35.11 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=72.1
Q ss_pred HHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCe-EEEccCCCCCCCHHHHHHHHHHHHHc
Q 013498 168 AWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDD-VEFSPEDAGRSDRKFLYEILGEVIKV 246 (442)
Q Consensus 168 a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~-V~f~~edasr~d~~~l~~~~~~~~~~ 246 (442)
.++.+..+|.+.|.+..-.++ ....+.++++|++|++. +.+++ .++.+.+..++..+--.
T Consensus 74 ~i~~~~~aGad~it~H~Ea~~---------------~~~~~~i~~Ik~~G~kaGlalnP----~T~~~~l~~~l~~vD~V 134 (229)
T PRK09722 74 YIDQLADAGADFITLHPETIN---------------GQAFRLIDEIRRAGMKVGLVLNP----ETPVESIKYYIHLLDKI 134 (229)
T ss_pred HHHHHHHcCCCEEEECccCCc---------------chHHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHhcCEE
Confidence 344445568998776543221 12346789999999861 34444 36777777777644211
Q ss_pred CCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 247 GATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 247 Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
=+=.+. +.-.|-..=..+.+-|+.+++..+.. .+.+..-=|-|.-..|.-...++||+.+=
T Consensus 135 LvMsV~-PGf~GQ~fi~~~l~KI~~lr~~~~~~---~~~~~IeVDGGI~~~~i~~~~~aGad~~V 195 (229)
T PRK09722 135 TVMTVD-PGFAGQPFIPEMLDKIAELKALRERN---GLEYLIEVDGSCNQKTYEKLMEAGADVFI 195 (229)
T ss_pred EEEEEc-CCCcchhccHHHHHHHHHHHHHHHhc---CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 111222 33445555556666777777654321 12233334778888999999999999973
No 478
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=78.47 E-value=29 Score=35.10 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhCC
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANTP 277 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~p 277 (442)
..++++.+. |.. +.+. + +|-..-.+..+.+.++.+| ..|+.|.|++.+-.=+ .+.+.++.+++..|
T Consensus 134 T~~~v~~~~--~~~-~~i~--~-TRKT~Pg~R~l~k~AV~~GGG~~HR~gLsd~iLikdNHi~~~G~i~~av~~~r~~~~ 207 (296)
T PRK09016 134 VRRYVELLA--GTN-TQLL--D-TRKTLPGLRSALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSIRQAVEKAFWLHP 207 (296)
T ss_pred HHHHHHHhc--CCC-eEEE--e-cCCCCCchhHHHHHHHHhcCcccccCCchhhhccCHHHHHHhCcHHHHHHHHHHhCC
Confidence 345555553 332 4443 2 4655556777777777775 3589999998664222 36778888888877
Q ss_pred CCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHHHHHHhccccccCCccCCCChhHHHHHH
Q 013498 278 GIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVVMAFKCRGEHILGGLYTGINTRHIVMAS 357 (442)
Q Consensus 278 ~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv~~L~~~g~~~~~G~~tgidl~~L~~ls 357 (442)
. .+|++-+.+ +.-+.+|+++|+|.|-. =|-+.|++-........+......-||+++.+.+.+
T Consensus 208 ~---~kIeVEv~s-----leea~ea~~~gaDiI~L---------Dn~s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA 270 (296)
T PRK09016 208 D---VPVEVEVEN-----LDELDQALKAGADIIML---------DNFTTEQMREAVKRTNGRALLEVSGNVTLETLREFA 270 (296)
T ss_pred C---CCEEEEeCC-----HHHHHHHHHcCCCEEEe---------CCCChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHH
Confidence 5 335555554 56678999999999854 466778877777654322222345689999998876
Q ss_pred H
Q 013498 358 K 358 (442)
Q Consensus 358 ~ 358 (442)
.
T Consensus 271 ~ 271 (296)
T PRK09016 271 E 271 (296)
T ss_pred h
Confidence 4
No 479
>PLN02334 ribulose-phosphate 3-epimerase
Probab=78.33 E-value=65 Score=30.83 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=93.4
Q ss_pred HHHHHHHHHhHcCCCEEEEccCCC--ChhH-H--HHHHHHHHHhcccccccCCccceEeeecccchh-hHHHHHHHHHhC
Q 013498 102 EKLDIARQLAKLGVDIIEAGFPAA--SKED-F--EAVRTIAKEVGNAVDAESGYVPVICGLSRCNER-DIKTAWEAVKYA 175 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p~~--~~~d-~--e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~-dI~~a~e~l~~~ 175 (442)
.-.+.++.+.+.|++.|.+-..-. .|.. + +.++.+.+.. +. +.-+-+.-.+.+ .++.+.+ +
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~-~~--------~~~vhlmv~~p~d~~~~~~~----~ 87 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHT-DA--------PLDCHLMVTNPEDYVPDFAK----A 87 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcC-CC--------cEEEEeccCCHHHHHHHHHH----c
Confidence 345677888899999998843211 1221 1 5666666542 11 100111111233 3444443 5
Q ss_pred CCCEEEEeecC-ChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC-CcEEec
Q 013498 176 KRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNI 253 (442)
Q Consensus 176 g~~~v~i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G-ad~I~l 253 (442)
|.+.|.+.... .+ +...+.++.+++.|+. +.+.+. ..++.+ .++.+.+.| +|.|.+
T Consensus 88 gad~v~vH~~q~~~---------------d~~~~~~~~i~~~g~~-iGls~~--~~t~~~----~~~~~~~~~~~Dyi~~ 145 (229)
T PLN02334 88 GASIFTFHIEQAST---------------IHLHRLIQQIKSAGMK-AGVVLN--PGTPVE----AVEPVVEKGLVDMVLV 145 (229)
T ss_pred CCCEEEEeeccccc---------------hhHHHHHHHHHHCCCe-EEEEEC--CCCCHH----HHHHHHhccCCCEEEE
Confidence 88988554431 11 2345678888888874 555441 112333 334444553 887632
Q ss_pred ----cCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEE
Q 013498 254 ----PDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 254 ----aDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+.+.|-..+....+.++.+++..++ ++|.+ +=|.-..|.-..+++||+.|
T Consensus 146 ~~v~pg~~~~~~~~~~~~~i~~~~~~~~~---~~I~a----~GGI~~e~i~~l~~aGad~v 199 (229)
T PLN02334 146 MSVEPGFGGQSFIPSMMDKVRALRKKYPE---LDIEV----DGGVGPSTIDKAAEAGANVI 199 (229)
T ss_pred EEEecCCCccccCHHHHHHHHHHHHhCCC---CcEEE----eCCCCHHHHHHHHHcCCCEE
Confidence 3344544566677778888877553 33433 34666778889999999997
No 480
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.15 E-value=31 Score=32.84 Aligned_cols=101 Identities=23% Similarity=0.325 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCC
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAK 176 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g 176 (442)
.++.++.+++++.|++.++..||= |. .++|++..+.+.+... .|....=+-....++...++. ..
T Consensus 104 ~~~~~~a~~~~~~l~~~~i~~iEe--P~-~~~d~~~~~~L~~~~~---------~pIa~dEs~~~~~~~~~~~~~---~~ 168 (229)
T cd00308 104 AWTPKEAIRLIRALEKYGLAWIEE--PC-APDDLEGYAALRRRTG---------IPIAADESVTTVDDALEALEL---GA 168 (229)
T ss_pred CCCHHHHHHHHHHhhhcCCCeEEC--CC-CccCHHHHHHHHhhCC---------CCEEeCCCCCCHHHHHHHHHc---CC
Confidence 478999999999999999999996 53 3456777777776421 232221111234455444332 23
Q ss_pred CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC
Q 013498 177 RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE 226 (442)
Q Consensus 177 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e 226 (442)
++.+.+= .++-.-+..+.+.+++|+++|+. +.++..
T Consensus 169 ~d~~~~k-------------~~~~GGi~~~~~i~~~a~~~gi~-~~~~~~ 204 (229)
T cd00308 169 VDILQIK-------------PTRVGGLTESRRAADLAEAFGIR-VMVHGT 204 (229)
T ss_pred CCEEecC-------------ccccCCHHHHHHHHHHHHHcCCE-EeecCC
Confidence 4444321 11112356777899999999985 777654
No 481
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=78.14 E-value=28 Score=37.78 Aligned_cols=164 Identities=11% Similarity=0.049 Sum_probs=93.1
Q ss_pred cccchhhHHHHHHHHHhCCCCEEEEeecC-ChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEE---ccCCCCCCCH
Q 013498 158 SRCNERDIKTAWEAVKYAKRPRIHTFIAT-SGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEF---SPEDAGRSDR 233 (442)
Q Consensus 158 ~r~~~~dI~~a~e~l~~~g~~~v~i~~~~-Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f---~~edasr~d~ 233 (442)
.|.+.+|+....+.+-.+|+..|.+.-+. .|.-+ +-++-++ +++++.+-+...+.-+. .-+ ++.--...+.
T Consensus 22 tr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~-rfl~Edp---werlr~lr~~~~nt~lq-mL~Rg~N~vGy~~y~d 96 (499)
T PRK12330 22 TRMAMEDMVGACEDIDNAGYWSVECWGGATFDACI-RFLNEDP---WERLRTFRKLMPNSRLQ-MLLRGQNLLGYRHYED 96 (499)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhh-cccCCCH---HHHHHHHHHhCCCCeEE-EEEcccccCCccCcch
Confidence 46677887777777777899888876222 12111 1233344 34444443333332211 101 1111233445
Q ss_pred HHHHHHHHHHHHcCCcEEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEE---eecCCcchHHHHHHHHHHhCCCEE
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGITMPTEFGKLIADIKANTPGIENVVIST---HCQNDLGLSTANTIAGACAGARQV 310 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~---H~HNDlGLA~ANalaAl~aGa~~v 310 (442)
+-+...++.+.+.|+|.|++.|..--. ..+...++.+++.-... ...|.+ +-| |...-+.-+-.+.++||+.|
T Consensus 97 dvv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~-~~~i~yt~sp~~-t~e~~~~~a~~l~~~Gad~I 172 (499)
T PRK12330 97 EVVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHA-QGTICYTVSPIH-TVEGFVEQAKRLLDMGADSI 172 (499)
T ss_pred hHHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeE-EEEEEEecCCCC-CHHHHHHHHHHHHHcCCCEE
Confidence 667778899999999999999987655 66777778887753211 123433 344 55565666777888999987
Q ss_pred EecccccccccCcccH---HHHHHHHHh
Q 013498 311 EVTINGIGERAGNASL---EEVVMAFKC 335 (442)
Q Consensus 311 d~Tv~GlGeraGNa~l---Eevv~~L~~ 335 (442)
-. .-=+|...- .+++..|+.
T Consensus 173 ~I-----kDtaGll~P~~~~~LV~~Lk~ 195 (499)
T PRK12330 173 CI-----KDMAALLKPQPAYDIVKGIKE 195 (499)
T ss_pred Ee-----CCCccCCCHHHHHHHHHHHHH
Confidence 32 223355443 344555544
No 482
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=78.08 E-value=33 Score=34.33 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=66.5
Q ss_pred HHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCc-EEeccCcccccCH-HHHHHHHHHHHHhCCCCccee
Q 013498 206 ARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGAT-TLNIPDTVGITMP-TEFGKLIADIKANTPGIENVV 283 (442)
Q Consensus 206 ~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad-~I~laDT~G~~~P-~~v~~li~~l~~~~p~~~~v~ 283 (442)
.+++++.|++.|+.--.|++ .+.+.+..+++.+.+.+.. .|.+....--..| +.+..++..+.+.. ++|
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~-----~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~----~vp 76 (281)
T PRK06806 6 MKELLKKANQENYGVGAFSV-----ANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQA----KVP 76 (281)
T ss_pred HHHHHHHHHHCCceEEEEEe-----CCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHC----CCC
Confidence 56788889999985346766 4679999999999999865 4555543322233 34566666666655 377
Q ss_pred EEEeecCCcchHHHHHHHHHHhCCCEEE
Q 013498 284 ISTHCQNDLGLSTANTIAGACAGARQVE 311 (442)
Q Consensus 284 i~~H~HNDlGLA~ANalaAl~aGa~~vd 311 (442)
|.+|. |-|.-......|+++|++.|.
T Consensus 77 v~lHl--DH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 77 VAVHF--DHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred EEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 88666 446667788899999999864
No 483
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=77.80 E-value=73 Score=31.13 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=106.8
Q ss_pred CCCcCCCCCCCCCCHHHHHHHHHHHhHcCCCEEEEccCCCChhH--HHHHHHHHHHhcccccccCCccceEeeecccchh
Q 013498 86 TLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPAASKED--FEAVRTIAKEVGNAVDAESGYVPVICGLSRCNER 163 (442)
Q Consensus 86 TLRDG~Q~~g~~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d--~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~ 163 (442)
|||..- +..++ +-++.+....++|-+.|=+ +|...... .+.++.|.+.+... .++-+ -+..+
T Consensus 11 tLRnaR---~~~~P--dpv~aA~~a~~aGAdgITv-HlReDrRHI~d~Dv~~L~~~~~~~--------lNlE~--a~t~e 74 (234)
T cd00003 11 TLRNAR---GTNYP--DPVEAALLAEKAGADGITV-HLREDRRHIQDRDVRLLRELVRTE--------LNLEM--APTEE 74 (234)
T ss_pred hhhhcC---CCCCC--CHHHHHHHHHHcCCCEEEe-cCCCCcCcCCHHHHHHHHHHcCCC--------EEecc--CCCHH
Confidence 666433 33333 3567788888999999988 66432110 12344444443211 12221 23567
Q ss_pred hHHHHHHHHHhCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHH
Q 013498 164 DIKTAWEAVKYAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEV 243 (442)
Q Consensus 164 dI~~a~e~l~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~ 243 (442)
-++.+++. ..+.+ +++|..+-.+...-|++.....+.+.+.++..++.|+. |++-+ | .| .+.++.+
T Consensus 75 m~~ia~~~----kP~~v-tLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~-VSLFi-D---Pd----~~qi~~A 140 (234)
T cd00003 75 MLEIALEV----KPHQV-TLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIR-VSLFI-D---PD----PEQIEAA 140 (234)
T ss_pred HHHHHHHC----CCCEE-EECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCE-EEEEe-C---CC----HHHHHHH
Confidence 77777764 44454 56687777777777888888889999999999999995 77654 2 22 2456788
Q ss_pred HHcCCcEEec-----cCcccccC-HHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHH
Q 013498 244 IKVGATTLNI-----PDTVGITM-PTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTI 300 (442)
Q Consensus 244 ~~~Gad~I~l-----aDT~G~~~-P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANal 300 (442)
.+.||++|-| |+..+... ..++.++....+... +.-+++|+ .-||-..|..
T Consensus 141 ~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~----~~GL~VnA--GHgLny~Nv~ 197 (234)
T cd00003 141 KEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLAR----ELGLGVNA--GHGLNYENVK 197 (234)
T ss_pred HHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHH----HcCCEEec--CCCCCHHHHH
Confidence 8999999875 56544321 334555554444322 12245544 4455555653
No 484
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=77.79 E-value=76 Score=31.32 Aligned_cols=57 Identities=5% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc-C--Cc-EEeccCcccccCHHH
Q 013498 207 RSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-G--AT-TLNIPDTVGITMPTE 264 (442)
Q Consensus 207 ~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~-G--ad-~I~laDT~G~~~P~~ 264 (442)
.+.++.+.+.|...+++. ...+...|+.+.++++.+.+. + +. .+-.=|+.|.+.-..
T Consensus 141 ~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~ 201 (266)
T cd07944 141 LELLELVNEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANT 201 (266)
T ss_pred HHHHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHH
Confidence 345555556676533332 124566777777777766543 2 11 344446666654433
No 485
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=77.79 E-value=16 Score=35.76 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=77.0
Q ss_pred HHHHHHHHHhHcCCCEEEEccCCCChh--HHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhCCCCE
Q 013498 102 EKLDIARQLAKLGVDIIEAGFPAASKE--DFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYAKRPR 179 (442)
Q Consensus 102 ~kl~ia~~L~~~GV~~IEvG~p~~~~~--d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~g~~~ 179 (442)
+-++.+..-..+|-+.|=+ +|..... ..+.+..|.+.+... -++-++ +..+-++.+++. ..+.
T Consensus 23 dpv~aA~~a~~aGAdgITv-HlReDrRHI~d~Dv~~L~~~~~~~--------lNlE~a--~t~e~~~ia~~~----kP~~ 87 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITV-HLREDRRHIQDRDVRRLRELVKTP--------LNLEMA--PTEEMVDIALKV----KPDQ 87 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEE-EB-TT-SSS-HHHHHHHHHH-SSE--------EEEEEE--SSHHHHHHHHHH------SE
T ss_pred CHHHHHHHHHHcCCCEEEe-ccCCCcCcCCHHHHHHHHHHcccC--------EEeccC--CCHHHHHHHHhC----CcCE
Confidence 4567788888899999998 6643211 012344444433211 133333 356677777765 3444
Q ss_pred EEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEec
Q 013498 180 IHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNI 253 (442)
Q Consensus 180 v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~l 253 (442)
.+++|.....+...-|++.....+.+.+.++..++.|+. |++-+ |. + .+.++.+.+.|+|+|-|
T Consensus 88 -vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIr-vSLFi-DP---~----~~qi~~A~~~Gad~VEL 151 (239)
T PF03740_consen 88 -VTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIR-VSLFI-DP---D----PEQIEAAKELGADRVEL 151 (239)
T ss_dssp -EEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-E-EEEEE--S--------HHHHHHHHHTT-SEEEE
T ss_pred -EEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCE-EEEEe-CC---C----HHHHHHHHHcCCCEEEE
Confidence 466788887777777888777789999999999999984 77655 21 2 35577888999999987
No 486
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=77.74 E-value=36 Score=34.52 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHc-CCCeEEEccCCCCCCCHHHHHHHHHHHHHcC-CcEEeccCccc-ccCHHHH-HHHHHHHHHhCCCC
Q 013498 204 EIARSMVKFARSL-GCDDVEFSPEDAGRSDRKFLYEILGEVIKVG-ATTLNIPDTVG-ITMPTEF-GKLIADIKANTPGI 279 (442)
Q Consensus 204 ~~~~~~v~~ar~~-G~~~V~f~~edasr~d~~~l~~~~~~~~~~G-ad~I~laDT~G-~~~P~~v-~~li~~l~~~~p~~ 279 (442)
+.+.++++++++. |+..|.|+.-|..-.+.+.+.++++.+.+.+ +.+|++. |-+ +..|..+ .++++.+++. + .
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~-Tr~~v~~p~rit~ell~~L~~~-g-~ 198 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFH-TRVPVADPARVTPALIAALKTS-G-K 198 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEe-CCCcccChhhcCHHHHHHHHHc-C-C
Confidence 4455677777755 7766888765655556678999999998886 5677775 422 3445543 4677777764 2 1
Q ss_pred cceeEEEeecCCcchHHHHHHHHH----HhCCCEEEec-cc-ccccccCcccHHHHHHHHHhcc
Q 013498 280 ENVVISTHCQNDLGLSTANTIAGA----CAGARQVEVT-IN-GIGERAGNASLEEVVMAFKCRG 337 (442)
Q Consensus 280 ~~v~i~~H~HNDlGLA~ANalaAl----~aGa~~vd~T-v~-GlGeraGNa~lEevv~~L~~~g 337 (442)
.+.|++|+-+..++ ...++.|+ ++|+....-+ +. |+.... ..+++++..+...|
T Consensus 199 -~v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~--~~l~~l~~~l~~~g 258 (321)
T TIGR03822 199 -TVYVALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLRGVNDDP--ETLAALMRAFVECR 258 (321)
T ss_pred -cEEEEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCH--HHHHHHHHHHHhcC
Confidence 36799999655554 34444444 4688775534 43 443211 12555565555544
No 487
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=77.73 E-value=46 Score=37.96 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=78.6
Q ss_pred HHHHhCCCCEEEEeec--------CChH--HHHHHhCCCHHHHHHHHHHHHHHHHHc-CCC---eEEEccCCC--CCCCH
Q 013498 170 EAVKYAKRPRIHTFIA--------TSGI--HMEHKLRKTKQQVVEIARSMVKFARSL-GCD---DVEFSPEDA--GRSDR 233 (442)
Q Consensus 170 e~l~~~g~~~v~i~~~--------~Sd~--h~~~~l~~s~~e~l~~~~~~v~~ar~~-G~~---~V~f~~eda--sr~d~ 233 (442)
+..+.+|.|.|.+..+ .|+. +...++|=|.+.-++...+.++.+|+. |-+ .|.+++.+. .-.++
T Consensus 558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~ 637 (765)
T PRK08255 558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTP 637 (765)
T ss_pred HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCH
Confidence 3346689999988765 2443 344456777887788888888888875 321 245565332 22467
Q ss_pred HHHHHHHHHHHHcCCcEEeccCcccccCH--------HHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHh
Q 013498 234 KFLYEILGEVIKVGATTLNIPDTVGITMP--------TEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACA 305 (442)
Q Consensus 234 ~~l~~~~~~~~~~Gad~I~laDT~G~~~P--------~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~a 305 (442)
+...++++.+.++|+|.|.+. .|...+ .....+.+.+|+.+. ++|..-.--+ ....+..+++.
T Consensus 638 ~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~----~pv~~~G~i~---~~~~a~~~l~~ 708 (765)
T PRK08255 638 DDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAG----IATIAVGAIS---EADHVNSIIAA 708 (765)
T ss_pred HHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcC----CEEEEeCCCC---CHHHHHHHHHc
Confidence 888899999999999999884 222111 111345566777663 4444332211 12334556665
Q ss_pred C-CCEE
Q 013498 306 G-ARQV 310 (442)
Q Consensus 306 G-a~~v 310 (442)
| ||.|
T Consensus 709 g~~D~v 714 (765)
T PRK08255 709 GRADLC 714 (765)
T ss_pred CCccee
Confidence 5 5544
No 488
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.53 E-value=9.8 Score=39.60 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc----Ccc--ccc-CHHHHHHHHHHHHHhC
Q 013498 204 EIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP----DTV--GIT-MPTEFGKLIADIKANT 276 (442)
Q Consensus 204 ~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la----DT~--G~~-~P~~v~~li~~l~~~~ 276 (442)
+.+.+.++.+++.|.. |.+.. ++....++++.+.++|+|.|.+- |+. +.. .|..+.++++. .
T Consensus 118 ~l~~~iv~~~~~~~V~-v~vr~------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~----~ 186 (368)
T PRK08649 118 ELITERIAEIRDAGVI-VAVSL------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE----L 186 (368)
T ss_pred HHHHHHHHHHHhCeEE-EEEec------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH----C
Confidence 4455666767776542 43322 34556788999999999999983 322 222 56665544443 2
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccc
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGER 320 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGer 320 (442)
+ ++| ++ .+- .-...+..++++|||.|-. |.|.+
T Consensus 187 ~----ipV-Ia--G~V-~t~e~A~~l~~aGAD~V~V---G~G~G 219 (368)
T PRK08649 187 D----VPV-IV--GGC-VTYTTALHLMRTGAAGVLV---GIGPG 219 (368)
T ss_pred C----CCE-EE--eCC-CCHHHHHHHHHcCCCEEEE---CCCCC
Confidence 2 445 22 332 2245678888999999955 55543
No 489
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=77.48 E-value=9.7 Score=38.61 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCcEEeccCccc---ccCHHHHHHHHH----HHHHhCCCCcceeEEEeecCCcchHHHHHHHH-HHhC
Q 013498 235 FLYEILGEVIKVGATTLNIPDTVG---ITMPTEFGKLIA----DIKANTPGIENVVISTHCQNDLGLSTANTIAG-ACAG 306 (442)
Q Consensus 235 ~l~~~~~~~~~~Gad~I~laDT~G---~~~P~~v~~li~----~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaA-l~aG 306 (442)
.+.+.++.+.++|++.|.++|..+ .+.|+++.+++. .+.+.+... .....+|++.+.. +-+.. .+.|
T Consensus 181 ~~~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~~ilH~CG~~~----~~~~~l~~~g 255 (340)
T TIGR01463 181 FVIAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGITVLHICGFTQ----PILRDIANNG 255 (340)
T ss_pred HHHHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCceEEEECCCch----hhHHHHHHhC
Confidence 445566667789999999999875 678988776652 232222111 1346789887653 22333 3558
Q ss_pred CCEEE
Q 013498 307 ARQVE 311 (442)
Q Consensus 307 a~~vd 311 (442)
++.++
T Consensus 256 ~d~ls 260 (340)
T TIGR01463 256 CFGFS 260 (340)
T ss_pred CCEEe
Confidence 88764
No 490
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=77.47 E-value=57 Score=33.44 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEccCCCCC------------------------CCHH-------HHHHHHHHHHHcC
Q 013498 199 KQQVVEIARSMVKFARSLGCDDVEFSPEDAGR------------------------SDRK-------FLYEILGEVIKVG 247 (442)
Q Consensus 199 ~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr------------------------~d~~-------~l~~~~~~~~~~G 247 (442)
.++.++..+++++.+++.|.. +.+.+...+| .+.+ .+.+.++.+.++|
T Consensus 72 ~~~~i~~~~~l~~~vh~~g~~-~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~~aG 150 (353)
T cd02930 72 SPRQAAGHRLITDAVHAEGGK-IALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAG 150 (353)
T ss_pred CHHHHHHHHHHHHHHHHcCCE-EEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 346678888888888888864 4443321111 1222 3334445566789
Q ss_pred CcEEeccCc-------------------ccccC---HHHHHHHHHHHHHhCCCCcceeEEEe-----ecCCcchHHHHHH
Q 013498 248 ATTLNIPDT-------------------VGITM---PTEFGKLIADIKANTPGIENVVISTH-----CQNDLGLSTANTI 300 (442)
Q Consensus 248 ad~I~laDT-------------------~G~~~---P~~v~~li~~l~~~~p~~~~v~i~~H-----~HNDlGLA~ANal 300 (442)
.|.|-|.=- .|-.. +....++++.+|+.++. +.+|.+- .|+ -|+....++
T Consensus 151 fDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~--d~~v~iRi~~~D~~~-~g~~~~e~~ 227 (353)
T cd02930 151 YDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE--DFIIIYRLSMLDLVE-GGSTWEEVV 227 (353)
T ss_pred CCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC--CceEEEEecccccCC-CCCCHHHHH
Confidence 888877321 12111 45567888999998864 3555532 222 233333222
Q ss_pred ----HHHHhCCCEEEeccc
Q 013498 301 ----AGACAGARQVEVTIN 315 (442)
Q Consensus 301 ----aAl~aGa~~vd~Tv~ 315 (442)
..-++|+++|++|.+
T Consensus 228 ~i~~~Le~~G~d~i~vs~g 246 (353)
T cd02930 228 ALAKALEAAGADILNTGIG 246 (353)
T ss_pred HHHHHHHHcCCCEEEeCCC
Confidence 223469999999764
No 491
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=77.43 E-value=61 Score=30.94 Aligned_cols=125 Identities=18% Similarity=0.301 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHHhHc-CCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHhC
Q 013498 97 TLTSKEKLDIARQLAKL-GVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKYA 175 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~-GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~~ 175 (442)
..+.++.++.++.|.+. |.-.|++ |... +-.++++.|.+. + . + +.+-.-...+....+.+ +
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKI--P~T~-~gl~ai~~L~~~-g--------i-~-v~~T~V~s~~Qa~~Aa~----A 121 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKI--PVTE-DGLKAIKKLSEE-G--------I-K-TNVTAIFSAAQALLAAK----A 121 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEE--cCcH-hHHHHHHHHHHc-C--------C-c-eeeEEecCHHHHHHHHH----c
Confidence 46789999999999888 7666776 6443 556778777664 1 1 1 11111124455555554 4
Q ss_pred CCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcEEecc
Q 013498 176 KRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATTLNIP 254 (442)
Q Consensus 176 g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~I~la 254 (442)
|.+.|..|+.-- ...+.+ .++.+.++.++++..|+. +.+-. +|-.++.++.+ +..+|++.+.++
T Consensus 122 GA~yvsP~vgR~-----~~~g~d---g~~~i~~i~~~~~~~~~~-tkil~--As~r~~~ei~~----a~~~Gad~vTv~ 185 (211)
T cd00956 122 GATYVSPFVGRI-----DDLGGD---GMELIREIRTIFDNYGFD-TKILA--ASIRNPQHVIE----AALAGADAITLP 185 (211)
T ss_pred CCCEEEEecChH-----hhcCCC---HHHHHHHHHHHHHHcCCC-ceEEe--cccCCHHHHHH----HHHcCCCEEEeC
Confidence 888877776432 224443 456667888888889875 44432 23334444433 456899999885
No 492
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.42 E-value=49 Score=33.11 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcC---CcEEeccCcccccCHH-----HHHHHHHHHHHhC
Q 013498 205 IARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVG---ATTLNIPDTVGITMPT-----EFGKLIADIKANT 276 (442)
Q Consensus 205 ~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~G---ad~I~laDT~G~~~P~-----~v~~li~~l~~~~ 276 (442)
...++++.+++.|.. +.+. .+|-+...+..+.+.++..| ..|+.|.|++ ....+ .+.+.++.+|+..
T Consensus 106 ~T~~~v~~~~~~~~~-~~i~---~TRKt~Pg~R~l~k~Av~~GGg~~HR~gLsd~v-LikdnHi~~~~i~~av~~~r~~~ 180 (278)
T PRK08385 106 ETRKLVELVKAVNPK-VRVA---GTRKTLPGLRLLDKKAIIIGGGEPHRFSLSDAI-LIKDNHLALVPLEEAIRRAKEFS 180 (278)
T ss_pred HHHHHHHHHHhcCCC-EEEE---EeCCCChhhhHHHHHHHHhcCCcccCCCCcccE-EEccCHHHHHHHHHHHHHHHHhC
Confidence 456778888877764 5553 35655566777777777665 4678888887 21111 3677888888877
Q ss_pred CCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccccccCcccHHHHH---HHHHhcc--ccccCCccCCCChh
Q 013498 277 PGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIGERAGNASLEEVV---MAFKCRG--EHILGGLYTGINTR 351 (442)
Q Consensus 277 p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlGeraGNa~lEevv---~~L~~~g--~~~~~G~~tgidl~ 351 (442)
|. .+|++-+.+ +.-+..|+++|+|.|-.- |.+.|++- ..++..+ .+......-||+++
T Consensus 181 ~~---~kIeVEv~~-----leea~~a~~agaDiI~LD---------n~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ 243 (278)
T PRK08385 181 VY---KVVEVEVES-----LEDALKAAKAGADIIMLD---------NMTPEEIREVIEALKREGLRERVKIEVSGGITPE 243 (278)
T ss_pred CC---CcEEEEeCC-----HHHHHHHHHcCcCEEEEC---------CCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHH
Confidence 64 335555553 667789999999988442 33455544 4444322 11112344589999
Q ss_pred HHHHHHH
Q 013498 352 HIVMASK 358 (442)
Q Consensus 352 ~L~~ls~ 358 (442)
.+.+.++
T Consensus 244 ni~~yA~ 250 (278)
T PRK08385 244 NIEEYAK 250 (278)
T ss_pred HHHHHHH
Confidence 9987764
No 493
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=77.31 E-value=79 Score=31.29 Aligned_cols=206 Identities=13% Similarity=0.048 Sum_probs=112.3
Q ss_pred CCCCCHHHHHHHHHHHhHcCCCEEEEccC--CCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHH
Q 013498 95 GATLTSKEKLDIARQLAKLGVDIIEAGFP--AASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAV 172 (442)
Q Consensus 95 g~~fs~e~kl~ia~~L~~~GV~~IEvG~p--~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l 172 (442)
+..|-......+-+...++|+.....-.+ ...+...+.++.+..+.. ........+..-+..+++..
T Consensus 44 ~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~-----------daIiv~~~d~~~~~~~v~~a 112 (322)
T COG1879 44 GNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGV-----------DAIIINPVDPDALTPAVKKA 112 (322)
T ss_pred CChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCC-----------CEEEEcCCChhhhHHHHHHH
Confidence 34455555666777777888722222222 122223444554433211 11122334555566666666
Q ss_pred HhCCCCEEEEeecCChH-HHHHHhCC-CHHHHHHHHHHHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHcCCcE
Q 013498 173 KYAKRPRIHTFIATSGI-HMEHKLRK-TKQQVVEIARSMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKVGATT 250 (442)
Q Consensus 173 ~~~g~~~v~i~~~~Sd~-h~~~~l~~-s~~e~l~~~~~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~Gad~ 250 (442)
..+|++.|.+-....+. ....-.+. +.+.-......+++.....|. .+.+..........+...-+.+.+.+.+...
T Consensus 113 ~~aGIpVv~~d~~~~~~~~~~~~vg~dn~~~G~~~a~~l~~~~~~~g~-v~~~~g~~~~~~~~~R~~G~~~~l~~~~~~~ 191 (322)
T COG1879 113 KAAGIPVVTVDSDIPGPGDRVAYVGSDNYKAGRLAAEYLAKALGGKGK-VVVLVGSPGNSSAEERVKGFRDALKEHPPDI 191 (322)
T ss_pred HHCCCcEEEEecCCCCCCceeEEEecCcHHHHHHHHHHHHHHhCCCCe-EEEEecCCCCchHHHHHhhHHHHHHhCCCcE
Confidence 67788887665444432 11111232 222222233444444444443 3444443444555566666666666666666
Q ss_pred EeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHHHhCCCEEEecccccc
Q 013498 251 LNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGACAGARQVEVTINGIG 318 (442)
Q Consensus 251 I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl~aGa~~vd~Tv~GlG 318 (442)
.......|-..+....+.+..+.+..|++ -+++++||- +++.-..+.-.+|-.. +.-+.|..
T Consensus 192 ~v~~~~~~~~~~~~a~~~~~~~L~~~pdi----~~i~~~~d~-~a~ga~~A~~~~g~~~-~v~v~g~D 253 (322)
T COG1879 192 EVVDVQTGDWDRDKALEVMEDLLAANPDI----DGIYAANDG-MALGAIQALKAAGRKG-DVVVVGFD 253 (322)
T ss_pred EEeeccCCcccHHHHHHHHHHHHHhCCCc----eEEEECCch-hHHHHHHHHHHcCCCC-ceEEEEec
Confidence 66677888999999999999999998863 477788763 3433333333567665 56666554
No 494
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=77.22 E-value=59 Score=29.76 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEE--ccCCCChhHHHHHHHHHHHhcccccccCCccceEeeecccchhhHHHHHHHHHh
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEA--GFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGLSRCNERDIKTAWEAVKY 174 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEv--G~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~~r~~~~dI~~a~e~l~~ 174 (442)
.++.++.++.++.... .++.|.+ |-|-..++-.+.++.+.+. ++...+..-+ ...+.++. +..
T Consensus 46 ~~~~~~i~~~i~~~~~-~~~~i~~sGGEPll~~~l~~li~~~~~~---------g~~v~i~TNg-~~~~~l~~----l~~ 110 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQG-LIDGVVITGGEPTLQAGLPDFLRKVREL---------GFEVKLDTNG-SNPRVLEE----LLE 110 (191)
T ss_pred cCCHHHHHHHHHHhcC-CCCeEEEECCcccCcHhHHHHHHHHHHC---------CCeEEEEeCC-CCHHHHHH----HHh
Confidence 4677776666655422 3566655 4465555433556655542 1211222222 12333333 333
Q ss_pred CC-CCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCeEEEccC-CCCCCCHHHHHHHHHHHHHcC
Q 013498 175 AK-RPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFARSLGCDDVEFSPE-DAGRSDRKFLYEILGEVIKVG 247 (442)
Q Consensus 175 ~g-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar~~G~~~V~f~~e-dasr~d~~~l~~~~~~~~~~G 247 (442)
+| ++.|.+.+..++-......+...... +.+.+.++.+++.|+. +.+... ...-.+.+.+.++++.+.+.|
T Consensus 111 ~g~~~~v~isl~~~~~~~~~~~g~~~~~~-~~~~~~i~~l~~~gi~-~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 111 EGLVDYVAMDVKAPPEKYPELYGLEKNGS-NNILKSLEILLRSGIP-FELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred cCCCcEEEEeccCChHHHHHHHCCCCchH-HHHHHHHHHHHHcCCC-EEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 46 57777765544433333334322111 4677888999999985 444321 123345678888888888776
No 495
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=77.13 E-value=72 Score=32.01 Aligned_cols=123 Identities=12% Similarity=0.061 Sum_probs=71.1
Q ss_pred hCCCCEEEEeecCChHHHHHHhCCCHHHHHHHHHHHHHHHH-HcCCCeEEE--ccCCCCCCCHHHHHHHHHHHHHcCCc-
Q 013498 174 YAKRPRIHTFIATSGIHMEHKLRKTKQQVVEIARSMVKFAR-SLGCDDVEF--SPEDAGRSDRKFLYEILGEVIKVGAT- 249 (442)
Q Consensus 174 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ar-~~G~~~V~f--~~edasr~d~~~l~~~~~~~~~~Gad- 249 (442)
..|+..+.+.... .. ..+.|.+.++.++.+.+.++.++ +.|+. +.+ +... ..+++.+.+.++.+.+.+.+
T Consensus 83 ~~Gv~y~E~r~~p-~~--~~~~g~~~~~~~~~~~~~i~~a~~~~gi~-~~li~~~~r--~~~~~~~~~~~~~~~~~~~~~ 156 (324)
T TIGR01430 83 KDGVVYAEVFFDP-QL--HTNRGISPDTVVEAVLDGLDEAERDFGIK-SRLILCGMR--HKQPEAAEETLELAKPYKEQT 156 (324)
T ss_pred HcCCEEEEEEeCc-cc--cccCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEEEEeC--CCCHHHHHHHHHHHHhhccCc
Confidence 3577666655332 11 22457899999998888877665 45663 432 3321 23567777888777776554
Q ss_pred --EEeccCcccccCHHHHHHHHHHHHHhCCCCcceeEEEeecCCcchHHHHHHHHH-HhCCCE
Q 013498 250 --TLNIPDTVGITMPTEFGKLIADIKANTPGIENVVISTHCQNDLGLSTANTIAGA-CAGARQ 309 (442)
Q Consensus 250 --~I~laDT~G~~~P~~v~~li~~l~~~~p~~~~v~i~~H~HNDlGLA~ANalaAl-~aGa~~ 309 (442)
.+.++-.-....|+.+.+.+...++. ++++.+|++-..+. .+...++ +.|++.
T Consensus 157 vvg~~l~~~e~~~~~~~~~~~~~~A~~~-----g~~i~~Ha~E~~~~--~~~~~~~~~~g~~r 212 (324)
T TIGR01430 157 IVGFGLAGDERGGPPPDFVRAFAIAREL-----GLHLTVHAGELGGP--ESVREALDDLGATR 212 (324)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHHHC-----CCCeEEecCCCCCh--HHHHHHHHHcCchh
Confidence 22333221223466677777666653 36788898865332 1334454 578753
No 496
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=76.67 E-value=89 Score=31.55 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=77.3
Q ss_pred CCCCHHHHHHHHHHHHHc-CCc--EEe------ccCcccccCHHH--------HHHHHHHHHHhCCCCcceeEEEeecCC
Q 013498 229 GRSDRKFLYEILGEVIKV-GAT--TLN------IPDTVGITMPTE--------FGKLIADIKANTPGIENVVISTHCQND 291 (442)
Q Consensus 229 sr~d~~~l~~~~~~~~~~-Gad--~I~------laDT~G~~~P~~--------v~~li~~l~~~~p~~~~v~i~~H~HND 291 (442)
+|-+...+..+.+.++.. |.+ +.. .-|.+|.+ |+. +.+-++.+++.+|...++.+++..+++
T Consensus 118 TRKt~Pg~r~~~k~Av~~GGg~~hr~~l~d~~l~~~~~Gti-~H~~I~~~g~~~~~A~~~~~~~~p~~~~i~vevdt~~~ 196 (302)
T cd01571 118 DRRDHPAIQPMDGRAAYIGGCDGVSTVLGAELLGEKPSGTM-PHALIQIFGGDQVEAWKAFDETYPEDVPRIALIDTFND 196 (302)
T ss_pred cccCCcchhHHHHHHHHhcCccceehHHHHhhcCCCceech-hhHHHHHcCchHHHHHHHHHHHCCCcCCeEEEEeecCc
Confidence 454444466666666666 443 444 44444543 343 566778888888842347899999987
Q ss_pred cchHHHHHHHHHHhC---CCEEEecccccccccCccc--HHHHHHHHHhcc-ccccCCccCCCChhHHHHHHH
Q 013498 292 LGLSTANTIAGACAG---ARQVEVTINGIGERAGNAS--LEEVVMAFKCRG-EHILGGLYTGINTRHIVMASK 358 (442)
Q Consensus 292 lGLA~ANalaAl~aG---a~~vd~Tv~GlGeraGNa~--lEevv~~L~~~g-~~~~~G~~tgidl~~L~~ls~ 358 (442)
-+.+++.+.++| ++.|-. --++++.|+.+ ++++...|+..+ .+...-...|||++.+.++++
T Consensus 197 ---~v~eal~~~~~~~~~~d~I~l--Dn~~~~~G~~~~~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~ 264 (302)
T cd01571 197 ---EKEEALKAAKALGDKLDGVRL--DTPSSRRGVFRYLIREVRWALDIRGYKHVKIFVSGGLDEEDIKELED 264 (302)
T ss_pred ---chHHHHHHHHHhCCCCcEEEE--CCCCCCCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHH
Confidence 245677777776 555422 13445667765 668888887664 322223456899999988874
No 497
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=76.64 E-value=60 Score=31.78 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCeEEEccCCCCCCCHHHHHHHHHHHHHc-CC--cEEeccCcccccCHHHH
Q 013498 208 SMVKFARSLGCDDVEFSPEDAGRSDRKFLYEILGEVIKV-GA--TTLNIPDTVGITMPTEF 265 (442)
Q Consensus 208 ~~v~~ar~~G~~~V~f~~edasr~d~~~l~~~~~~~~~~-Ga--d~I~laDT~G~~~P~~v 265 (442)
++++.+.+.|...+++. ...+...|+.+.++++.+.+. +. =.+-.=|+.|.+.-..+
T Consensus 145 ~~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~l 204 (263)
T cd07943 145 EQAKLMESYGADCVYVT-DSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSL 204 (263)
T ss_pred HHHHHHHHcCCCEEEEc-CCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHH
Confidence 44445555665433331 124455666666666666543 32 13334466666554433
No 498
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=76.53 E-value=61 Score=34.89 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCeEEE-ccCCCCCCCHHHHHHHHHHHHHc----C-CcEEeccCcccccCHHHHHHHH
Q 013498 196 RKTKQQVVEIARSMVKFARSLGCDDVEF-SPEDAGRSDRKFLYEILGEVIKV----G-ATTLNIPDTVGITMPTEFGKLI 269 (442)
Q Consensus 196 ~~s~~e~l~~~~~~v~~ar~~G~~~V~f-~~edasr~d~~~l~~~~~~~~~~----G-ad~I~laDT~G~~~P~~v~~li 269 (442)
.++.+|+++ .++.+++.|...+.+ +.++....+.+++.++++.+.+. | ..+|.+. +|.++.++...|-
T Consensus 114 ~Ls~EEI~~----ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~in--ig~lt~eey~~Lk 187 (469)
T PRK09613 114 KLTQEEIRE----EVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVN--IAPTTVENYKKLK 187 (469)
T ss_pred ECCHHHHHH----HHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEE--eecCCHHHHHHHH
Confidence 346666554 455567899875554 45565667899999999999874 2 3456663 7888888877765
Q ss_pred HHHHHh------CCCCcceeEEEee---cCCcchHHHHHHHHHHhCCC-EEEeccccccc
Q 013498 270 ADIKAN------TPGIENVVISTHC---QNDLGLSTANTIAGACAGAR-QVEVTINGIGE 319 (442)
Q Consensus 270 ~~l~~~------~p~~~~v~i~~H~---HNDlGLA~ANalaAl~aGa~-~vd~Tv~GlGe 319 (442)
+.=... +-+. ..-=.+|. ..|+---+..--.|.++|.+ .=-+.+.|||+
T Consensus 188 eaGv~~~~l~qETY~~-ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge 246 (469)
T PRK09613 188 EAGIGTYQLFQETYHK-PTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYD 246 (469)
T ss_pred HcCCCEEEeccccCCH-HHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCC
Confidence 430000 0000 00001232 23455566666788899998 44677999997
No 499
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=76.31 E-value=1.4e+02 Score=33.72 Aligned_cols=146 Identities=20% Similarity=0.211 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHhHcCCCEEEEccCCCChhHHHHHHHHHHHhcccccccCCccceEeee----------------ccc
Q 013498 97 TLTSKEKLDIARQLAKLGVDIIEAGFPAASKEDFEAVRTIAKEVGNAVDAESGYVPVICGL----------------SRC 160 (442)
Q Consensus 97 ~fs~e~kl~ia~~L~~~GV~~IEvG~p~~~~~d~e~v~~l~~~~~~~~~~~~~l~~~i~~~----------------~r~ 160 (442)
....+.-++=+..|.++|.+++-+..| +.++.+.++.|.+.+.... .-+|-++.. .|.
T Consensus 106 T~D~eatv~Qi~~l~~aGceiVRvtv~--~~~~A~al~~I~~~L~~~g----~~iPLVADIHF~~~~Al~a~~~vdkiRI 179 (733)
T PLN02925 106 TKDVEATVDQVMRIADKGADIVRITVQ--GKKEADACFEIKNTLVQKG----YNIPLVADIHFAPSVALRVAECFDKIRV 179 (733)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHHHHhhcC----CCCCEEEecCCCHHHHHHHHHhcCCeEE
Confidence 355667777788999999999999887 4566777777776521100 001111110 111
Q ss_pred c-----------------h-----------hhHHHHHHHHHhCCCC-EEEEeecCChHHHHHHhCCCHHHHHHHHHHHHH
Q 013498 161 N-----------------E-----------RDIKTAWEAVKYAKRP-RIHTFIATSGIHMEHKLRKTKQQVVEIARSMVK 211 (442)
Q Consensus 161 ~-----------------~-----------~dI~~a~e~l~~~g~~-~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~ 211 (442)
| . +.+...++..++.|++ ||.+--..-+-.+..++|-+++..++-+.+.++
T Consensus 180 NPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGdtp~gmVeSAle~~~ 259 (733)
T PLN02925 180 NPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFAR 259 (733)
T ss_pred CCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCCChHHHHHHHHHHHH
Confidence 1 0 1111233444556666 666643333345666788899999999999999
Q ss_pred HHHHcCCCeEEEccCCCCC--CCHHHHHHHHHHHHHcCCc
Q 013498 212 FARSLGCDDVEFSPEDAGR--SDRKFLYEILGEVIKVGAT 249 (442)
Q Consensus 212 ~ar~~G~~~V~f~~edasr--~d~~~l~~~~~~~~~~Gad 249 (442)
.+.++|+..+.|++- +|. ....-+..++.++.+.|.+
T Consensus 260 i~e~~~f~diviS~K-sSn~~~~V~AyR~La~~L~~~g~~ 298 (733)
T PLN02925 260 ICRKLDYHNFVFSMK-ASNPVVMVQAYRLLVAEMYVLGWD 298 (733)
T ss_pred HHHHCCCCcEEEEEE-cCChHHHHHHHHHHHHHHHhcCCC
Confidence 999999988888873 222 2233444555666666654
No 500
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=76.25 E-value=36 Score=32.44 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHhHcCCCEEEEccCCC
Q 013498 98 LTSKEKLDIARQLAKLGVDIIEAGFPAA 125 (442)
Q Consensus 98 fs~e~kl~ia~~L~~~GV~~IEvG~p~~ 125 (442)
...++....++.+.++|++.|.+-++.+
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s 91 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVS 91 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETS
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCccc
Confidence 3445555556677778888888866543
Done!