Your job contains 1 sequence.
>013500
MSSYLSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSPLAISTRKARTPRKR
PNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQQEPNQQFFDESSELLL
PFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANHNPMEVQISS
EFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFG
GKLELGFGMRSGMKALRQVDEGNWWNFPIDVLQISPKFNNSSGTGNSNRKGSSEKRKKKV
GKEKPVAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQ
GNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFV
RRPNSNAQDERGKKKVVMLSDL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013500
(442 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175564 - symbol:CIA2 "chloroplast import appa... 604 7.3e-59 1
TAIR|locus:2120850 - symbol:CIL "AT4G25990" species:3702 ... 493 4.2e-47 1
TAIR|locus:2031180 - symbol:BBX15 "B-box domain protein 1... 200 1.5e-17 3
TAIR|locus:2007482 - symbol:AT1G07050 "AT1G07050" species... 212 8.9e-17 1
TAIR|locus:2201277 - symbol:BBX14 "B-box domain protein 1... 194 3.8e-16 3
TAIR|locus:2145698 - symbol:AT5G14370 species:3702 "Arabi... 217 1.1e-15 1
TAIR|locus:2031581 - symbol:BBX16 "B-box domain protein 1... 194 2.9e-15 3
TAIR|locus:2028421 - symbol:BBX17 "B-box domain protein 1... 193 2.1e-13 2
TAIR|locus:2062749 - symbol:AT2G46670 "AT2G46670" species... 143 3.3e-09 1
UNIPROTKB|Q9FDX8 - symbol:HD1 "Zinc finger protein HD1" s... 151 8.4e-08 1
TAIR|locus:2047246 - symbol:COL3 "CONSTANS-like 3" specie... 148 8.7e-08 1
UNIPROTKB|Q9FE92 - symbol:Hd1 "Heading day 1" species:453... 151 9.0e-08 1
TAIR|locus:2172545 - symbol:COL5 "CONSTANS-like 5" specie... 148 1.4e-07 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 148 2.5e-07 1
TAIR|locus:2074587 - symbol:COL2 "CONSTANS-like 2" specie... 145 3.0e-07 1
TAIR|locus:2143206 - symbol:CO "CONSTANS" species:3702 "A... 137 2.8e-06 1
TAIR|locus:2143221 - symbol:COL1 "CONSTANS-like 1" specie... 134 5.4e-06 1
TAIR|locus:505006360 - symbol:ZML1 "ZIM-like 1" species:3... 111 9.9e-06 2
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 132 2.3e-05 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 135 2.4e-05 2
TAIR|locus:2091082 - symbol:COL9 "CONSTANS-like 9" specie... 123 0.00010 1
TAIR|locus:2168083 - symbol:AT5G59990 "AT5G59990" species... 116 0.00014 2
TAIR|locus:2088748 - symbol:BBX10 "B-box domain protein 1... 121 0.00016 1
TAIR|locus:2129860 - symbol:BBX9 "B-box domain protein 9"... 120 0.00017 1
TAIR|locus:2051099 - symbol:AT2G33350 "AT2G33350" species... 112 0.00019 2
TAIR|locus:2164718 - symbol:BBX8 "B-box domain protein 8"... 120 0.00022 1
TAIR|locus:2051104 - symbol:BBX12 "B-box domain protein 1... 120 0.00025 1
TAIR|locus:2010504 - symbol:BBX13 "B-box domain protein 1... 118 0.00047 1
TAIR|locus:2043288 - symbol:AT2G47890 species:3702 "Arabi... 114 0.00082 1
>TAIR|locus:2175564 [details] [associations]
symbol:CIA2 "chloroplast import apparatus 2" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEP] [GO:0045036 "protein targeting to chloroplast"
evidence=RCA;IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR010402
Pfam:PF06203 PROSITE:PS51017 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009507 EMBL:AB023042 EMBL:AF359387
EMBL:AF372929 EMBL:AY078036 EMBL:AK316813 EMBL:AK221521
IPI:IPI00517190 IPI:IPI00544089 IPI:IPI00656805
RefSeq:NP_001032087.1 RefSeq:NP_568852.2 RefSeq:NP_851201.1
UniGene:At.9681 IntAct:Q9LU68 STRING:Q9LU68 PaxDb:Q9LU68
PRIDE:Q9LU68 EnsemblPlants:AT5G57180.2 GeneID:835824
KEGG:ath:AT5G57180 GeneFarm:2245 TAIR:At5g57180 eggNOG:NOG245310
HOGENOM:HOG000238782 InParanoid:Q9LU68 OMA:YLRSLMV PhylomeDB:Q9LU68
ProtClustDB:CLSN2680548 Genevestigator:Q9LU68 GO:GO:0045036
Uniprot:Q9LU68
Length = 435
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 174/449 (38%), Positives = 228/449 (50%)
Query: 1 MSSYLSGGG---RTYALDLEIIKXXXXXXXXXXXXXXX-XXXXXEASNSPLAISTRKART 56
MS+ LS GG Y+ +LE +K E+SNSPLAISTRK RT
Sbjct: 1 MSACLSSGGGGAAAYSFELEKVKSPPPSSSTTTTRATSPSSTISESSNSPLAISTRKPRT 60
Query: 57 PRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRRHHQQ-QEPNQQFFDES 115
RKRPNQTYNEAA LLSTA PNIFS+ NL+ +K H + P D++
Sbjct: 61 QRKRPNQTYNEAATLLSTAYPNIFSS----NLS---SKQKTHSSSNSHFYGPLLSDNDDA 113
Query: 116 SELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVD-FQGANHNPM 174
S+LLLP+ I++ FL H I K F + K + C GE++ F ++
Sbjct: 114 SDLLLPYESIEEPDFLFHPTIQTKTEFFSDQKEVN---SGGDCYG-GEIEKFDFSDEFDA 169
Query: 175 EVQISSEFDEDFDA-ESIILDEEFEEGI-DS-IMGNLSVKKDAIESDDGH-SQVHNSNCW 230
E + + +E D+ +++ GI +S + G ++ + + G Q+ N W
Sbjct: 170 ESILDEDIEEGIDSIMGTVVESNSNSGIYESRVPGMINRGGRSSSNRIGKLEQMMMINSW 229
Query: 231 YGNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNF-PIDVLQISPKF----------- 278
+ G F LG G+RS ALR+ D+ W +D QISP+
Sbjct: 230 NRSSNGFNF----PLGLGLRS---ALRENDDTKLWKIHTVDFEQISPRIQTVKTETAIST 282
Query: 279 -NNSSGTGNSNXXXXXXXXXXXXXXXXPVAESKVSELPAKEESPIPKANSGELLLKLQYD 337
+ G V + ++E + E++ LLKL YD
Sbjct: 283 VDEEKSDGKKVVISGEKSNKKKKKKKMTVTTTLITESKSLEDTEETSLKRTGPLLKLDYD 342
Query: 338 DVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFS 397
VL AWS K SPF DE + DV+ARLAQIDLF D G+REASVLRYKEKRRTRLFS
Sbjct: 343 GVLEAWSDKTSPFPDE--IQGSEAVDVNARLAQIDLFGDSGMREASVLRYKEKRRTRLFS 400
Query: 398 KKIRYQVRKVNADRRPRMKGRFVRRPNSN 426
KKIRYQVRK+NAD+RPRMKGRFVRRPN +
Sbjct: 401 KKIRYQVRKLNADQRPRMKGRFVRRPNES 429
>TAIR|locus:2120850 [details] [associations]
symbol:CIL "AT4G25990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002687 HOGENOM:HOG000238782
ProtClustDB:CLSN2680548 EMBL:AB493701 IPI:IPI00538830
RefSeq:NP_849445.1 UniGene:At.2953 EnsemblPlants:AT4G25990.2
GeneID:828705 KEGG:ath:AT4G25990 TAIR:At4g25990 eggNOG:NOG266168
OMA:ISTRRPR PhylomeDB:C0SVJ8 ArrayExpress:C0SVJ8
Genevestigator:C0SVJ8 Uniprot:C0SVJ8
Length = 409
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 147/345 (42%), Positives = 178/345 (51%)
Query: 112 FDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQGANH 171
+DE+S+LLLP+ I+++ FL + P P K F E K EV F
Sbjct: 89 YDEASQLLLPYVSIEENEFLFN------PTIPT--KTEHFLEQK-------EVSF----- 128
Query: 172 NPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWY 231
+ +EV D DFDAESI LDEE EEGIDS MGN IES+DG +
Sbjct: 129 DDLEVNGFGVLD-DFDAESI-LDEEIEEGIDSFMGN-------IESNDGDRENCYRVGRL 179
Query: 232 GNPMGIGFGGKLELGFGMRSGMKALRQVDEGNWWNFP-IDVLQISPKFNNSSGT----GN 286
M + G+ LG G+RS +LRQ ++ NWW FP ++ QISP+ ++ G
Sbjct: 180 EEIMKNAWNGRFRLGLGLRS---SLRQNNDENWWKFPTVEFDQISPRIQTTAAAAADDGQ 236
Query: 287 SNXXXXXXXXXXXXXXXXPVAESKVSE---LPAKEESPI-------PKANSG-ELLLKLQ 335
SN + K + PA ES PK LLKL
Sbjct: 237 SNVVDSSKIKTIVTAEGDKKKKKKKKKKKVAPAAAESKSSEVTDSNPKLEQRVSPLLKLD 296
Query: 336 YDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRL 395
YD VL AWSGK SPF DE L D G D RL +IDLF + G+REASVLRYKEKRR RL
Sbjct: 297 YDGVLEAWSGKESPFSDEILGSDADGVDFHVRLGEIDLFGESGMREASVLRYKEKRRNRL 356
Query: 396 FSKKIRYQVRKVNADRRPRMK---------------GRFVRRPNS 425
FSKKIRYQVRK+NAD+RPRMK GRFVRRPN+
Sbjct: 357 FSKKIRYQVRKLNADQRPRMKVKDWHCNIVVVSHQQGRFVRRPNA 401
Score = 196 (74.1 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 53/125 (42%), Positives = 69/125 (55%)
Query: 41 EASNSPLAISTRKARTPRKRPNQTYNEAAALLSTACPNIFSTKHLTNLNKFTTKPPDHRR 100
E ++ P +ISTR+ RTPRKRPNQTY+EAAALLSTA P IFS+K T K P
Sbjct: 30 ETNSPPFSISTRRPRTPRKRPNQTYDEAAALLSTAYPKIFSSKKAKTQIFGTNKSP---- 85
Query: 101 HHQQQEPNQQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQN 160
+DE+S+LLLP+ I+++ FL + I K LE K F + L
Sbjct: 86 --------LSDYDEASQLLLPYVSIEENEFLFNPTIPTKTEHFLEQKEVSF--DDLEVNG 135
Query: 161 SGEVD 165
G +D
Sbjct: 136 FGVLD 140
>TAIR|locus:2031180 [details] [associations]
symbol:BBX15 "B-box domain protein 15" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016020 "membrane" evidence=IDA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281 GO:GO:0016020
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AY093174
IPI:IPI00533844 PIR:E86384 RefSeq:NP_173915.2 UniGene:At.27494
EnsemblPlants:AT1G25440.1 GeneID:839130 KEGG:ath:AT1G25440
TAIR:At1g25440 eggNOG:NOG293508 HOGENOM:HOG000240360
InParanoid:Q8RWD0 OMA:SDEISHE PhylomeDB:Q8RWD0
ProtClustDB:CLSN2689085 Genevestigator:Q8RWD0 Uniprot:Q8RWD0
Length = 417
Score = 200 (75.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 39/49 (79%), Positives = 45/49 (91%)
Query: 374 FSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
F DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct: 356 FGDGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 403
Score = 73 (30.8 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGG 378
L+L+L YD V++ W G+G P+ S P + D+S A + +GG
Sbjct: 293 LMLRLNYDSVISTWGGQGPPW--SSGEPPERDMDISGWPA-FSMVENGG 338
Score = 41 (19.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 51 TRKARTPR 58
TRKARTPR
Sbjct: 89 TRKARTPR 96
>TAIR|locus:2007482 [details] [associations]
symbol:AT1G07050 "AT1G07050" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AY085907 EMBL:AK176556 EMBL:AB493438
IPI:IPI00532995 RefSeq:NP_563778.1 UniGene:At.42316 STRING:Q8LDM8
EnsemblPlants:AT1G07050.1 GeneID:837216 KEGG:ath:AT1G07050
TAIR:At1g07050 eggNOG:NOG283732 HOGENOM:HOG000090331
InParanoid:Q8LDM8 OMA:NMRREAS PhylomeDB:Q8LDM8
ProtClustDB:CLSN2687713 ArrayExpress:Q8LDM8 Genevestigator:Q8LDM8
Uniprot:Q8LDM8
Length = 195
Score = 212 (79.7 bits), Expect = 8.9e-17, P = 8.9e-17
Identities = 48/93 (51%), Positives = 60/93 (64%)
Query: 330 LLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKE 389
L L L + +V++AWS P ++ D N V + REASVLRYKE
Sbjct: 104 LKLNLNHQEVIDAWSDHQKPLWTDTSTLD---NSVYRGEVPVIEEKRNMRREASVLRYKE 160
Query: 390 KRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
KR++RLFSKKIRYQVRK+NAD+RPR KGRFV+R
Sbjct: 161 KRQSRLFSKKIRYQVRKLNADKRPRFKGRFVKR 193
>TAIR|locus:2201277 [details] [associations]
symbol:BBX14 "B-box domain protein 14" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA;TAS] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA] [GO:0009867 "jasmonic acid
mediated signaling pathway" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010310 "regulation of hydrogen
peroxide metabolic process" evidence=RCA] [GO:0010363 "regulation
of plant-type hypersensitive response" evidence=RCA] [GO:0030154
"cell differentiation" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 HOGENOM:HOG000240360 ProtClustDB:CLSN2689085
EMBL:AC011915 EMBL:AY054625 EMBL:AY081541 EMBL:AY084427
IPI:IPI00518479 PIR:D96709 RefSeq:NP_564932.1 UniGene:At.23999
UniGene:At.69467 UniGene:At.74856 IntAct:Q8LG76 STRING:Q8LG76
PRIDE:Q8LG76 EnsemblPlants:AT1G68520.1 GeneID:843181
KEGG:ath:AT1G68520 TAIR:At1g68520 eggNOG:NOG257442
InParanoid:Q8LG76 OMA:AFLCHAC PhylomeDB:Q8LG76
Genevestigator:Q8LG76 GermOnline:AT1G68520 Uniprot:Q8LG76
Length = 406
Score = 194 (73.4 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
Identities = 38/47 (80%), Positives = 44/47 (93%)
Query: 376 DGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
DGG REA V RY+EKRRTRLFSKKIRY+VRK+NA++RPRMKGRFV+R
Sbjct: 354 DGG-REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 399
Score = 65 (27.9 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 306 VAESKVSELPA--KEESPIPKANSGELLLKLQYDDVLNAWSGKGSPF 350
V E V+E+ KEE KA L+L+L Y+ V++ W G+G P+
Sbjct: 268 VMEMGVNEMSGGIKEEKK-EKA----LMLRLDYESVISTWGGQGIPW 309
Score = 42 (19.8 bits), Expect = 3.8e-16, Sum P(3) = 3.8e-16
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 51 TRKARTPR---KRPNQTYNEAAALLST 74
TRKARTPR K +++ +ST
Sbjct: 83 TRKARTPRGGKKSHTMVFHDLVPEMST 109
>TAIR|locus:2145698 [details] [associations]
symbol:AT5G14370 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR010402 Pfam:PF06203
PROSITE:PS51017 EMBL:CP002688 EMBL:AY050892 EMBL:AY091296
IPI:IPI00522642 RefSeq:NP_568300.1 UniGene:At.5173
EnsemblPlants:AT5G14370.1 GeneID:831288 KEGG:ath:AT5G14370
TAIR:At5g14370 HOGENOM:HOG000151170 InParanoid:Q949T9 OMA:WVSYSEV
PhylomeDB:Q949T9 ProtClustDB:CLSN2689669 ArrayExpress:Q949T9
Genevestigator:Q949T9 Uniprot:Q949T9
Length = 339
Score = 217 (81.4 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 51/111 (45%), Positives = 70/111 (63%)
Query: 330 LLLKLQYDDVLNAWSGKGSPFLD---ESLAPD--------GQGNDVSARLAQIDLFSDG- 377
L LKL Y+ ++ AWS KG+ ++D PD G + A ++ +
Sbjct: 229 LALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGFNDGGEAGNLWAVPEMETTER 288
Query: 378 ---GLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNS 425
G REAS+LRYKEKR+ RLFSK+IRYQVRK+NA++RPR+KGRFV+R +S
Sbjct: 289 LWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVKGRFVKREDS 339
>TAIR|locus:2031581 [details] [associations]
symbol:BBX16 "B-box domain protein 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA;ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0009641 "shade avoidance" evidence=IMP] [GO:0010223 "secondary
shoot formation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC016662 HOGENOM:HOG000240360 EMBL:BT015740
EMBL:BT020183 IPI:IPI00516267 PIR:C96766 RefSeq:NP_177528.1
UniGene:At.34943 IntAct:Q9C9A9 STRING:Q9C9A9
EnsemblPlants:AT1G73870.1 GeneID:843723 KEGG:ath:AT1G73870
TAIR:At1g73870 eggNOG:NOG320376 InParanoid:Q9C9A9 OMA:EAKCENG
PhylomeDB:Q9C9A9 ProtClustDB:CLSN2914358 Genevestigator:Q9C9A9
GermOnline:AT1G73870 Uniprot:Q9C9A9
Length = 392
Score = 194 (73.4 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 39/48 (81%), Positives = 45/48 (93%)
Query: 375 SDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
SDG REA VLRYKEKRRTRLFSKKIRY+VRK+NA++RPR+KGRFV+R
Sbjct: 341 SDGE-REARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRPRIKGRFVKR 387
Score = 59 (25.8 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 319 ESPIPKANSGELLLKLQYDDVLNAWSGKGSPF 350
E+ K L L+L Y V++AW GSP+
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPW 297
Score = 38 (18.4 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 52 RKARTPRKR 60
RKARTPR +
Sbjct: 87 RKARTPRSK 95
>TAIR|locus:2028421 [details] [associations]
symbol:BBX17 "B-box domain protein 17" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 EMBL:CP002684
GO:GO:0008270 GO:GO:0003700 GO:GO:0005622 IPI:IPI00544498
RefSeq:NP_175339.2 UniGene:At.38297 EnsemblPlants:AT1G49130.1
GeneID:841336 KEGG:ath:AT1G49130 OMA:VATKHER Uniprot:F4I1N0
Length = 326
Score = 193 (73.0 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 46/92 (50%), Positives = 59/92 (64%)
Query: 333 KLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQ--IDLFSDGGLREASVLRYKEK 390
+L Y++V+ AW + SP D + N S +L I+ REA V RY++K
Sbjct: 236 RLNYENVIAAWDKQESP-------RDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDK 288
Query: 391 RRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
R+ RLF KKIRY+VRKVNAD+RPRMKGRFVRR
Sbjct: 289 RKNRLFEKKIRYEVRKVNADKRPRMKGRFVRR 320
Score = 41 (19.5 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 52 RKARTPRKR 60
RKARTPR R
Sbjct: 95 RKARTPRSR 103
>TAIR|locus:2062749 [details] [associations]
symbol:AT2G46670 "AT2G46670" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 GenomeReviews:CT485783_GR UniGene:At.65052
EMBL:AB493594 IPI:IPI00540845 RefSeq:NP_182190.2
EnsemblPlants:AT2G46670.1 GeneID:819279 KEGG:ath:AT2G46670
TAIR:At2g46670 PhylomeDB:C0SV91 Genevestigator:Q3EBF0
Uniprot:C0SV91
Length = 183
Score = 143 (55.4 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 39/122 (31%), Positives = 63/122 (51%)
Query: 306 VAESKVSELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVS 365
V +S V+ K++SPIP ++ E + + GS +E +A +
Sbjct: 68 VLQSTVTN--QKQDSPIPVESNREKAASKEVE--------AGSQSTNEGIAGQSSSTEKP 117
Query: 366 ARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNS 425
REA++++++ KR+ R F KK+RYQ RK A++RPR+KG+FVR NS
Sbjct: 118 KEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNS 177
Query: 426 NA 427
+A
Sbjct: 178 DA 179
>UNIPROTKB|Q9FDX8 [details] [associations]
symbol:HD1 "Zinc finger protein HD1" species:39947 "Oryza
sativa Japonica Group" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048571 "long-day photoperiodism" evidence=IEP] [GO:0048572
"short-day photoperiodism" evidence=IEP] [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0045892 GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 EMBL:AP008212 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 GO:GO:0009908 GO:GO:0009909 GO:GO:0010229
eggNOG:NOG281690 OMA:RVCEACE GO:GO:0048579 GO:GO:0048576
EMBL:AB041837 EMBL:AB041838 EMBL:AB375859 EMBL:AP003044
EMBL:AP005813 RefSeq:NP_001057378.1 UniGene:Os.1189 STRING:Q9FDX8
EnsemblPlants:LOC_Os06g16370.1 GeneID:4340746 KEGG:osa:4340746
Gramene:Q9FDX8 ProtClustDB:CLSN2696123 GO:GO:0048571 GO:GO:0048572
Uniprot:Q9FDX8
Length = 395
Score = 151 (58.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 355 LAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPR 414
L P G N S Q+ L REA VLRY+EK++ R F K IRY+ RK A+ RPR
Sbjct: 301 LTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPR 360
Query: 415 MKGRFVRRPNSNAQDE 430
+KGRF +R S+ Q E
Sbjct: 361 IKGRFAKR--SDVQIE 374
>TAIR|locus:2047246 [details] [associations]
symbol:COL3 "CONSTANS-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010099 "regulation of
photomorphogenesis" evidence=IMP] [GO:0010161 "red light signaling
pathway" evidence=IMP] [GO:0009637 "response to blue light"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010114 "response to red light" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0032880
"regulation of protein localization" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC006585 EMBL:AC007266 GO:GO:0010161
GO:GO:0010099 HOGENOM:HOG000238833 EMBL:AY058130 EMBL:AY140103
EMBL:BT002107 EMBL:AY085729 IPI:IPI00519735 PIR:E84640
RefSeq:NP_180052.1 UniGene:At.24362 ProteinModelPortal:Q9SK53
IntAct:Q9SK53 STRING:Q9SK53 EnsemblPlants:AT2G24790.1 GeneID:817016
KEGG:ath:AT2G24790 TAIR:At2g24790 eggNOG:NOG277018
InParanoid:Q9SK53 OMA:TDSREND PhylomeDB:Q9SK53
ProtClustDB:CLSN2912944 Genevestigator:Q9SK53 Uniprot:Q9SK53
Length = 294
Score = 148 (57.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 35/82 (42%), Positives = 47/82 (57%)
Query: 351 LDESLAPDGQGNDVSARLAQIDLFS---DGGLREASVLRYKEKRRTRLFSKKIRYQVRKV 407
+D L P+ G V+A + + + REA VLRY+EKR+ R F K IRY RK
Sbjct: 199 IDVPLVPESGG--VTAEMTNTETPAVQLSPAEREARVLRYREKRKNRKFEKTIRYASRKA 256
Query: 408 NADRRPRMKGRFVRRPNSNAQD 429
A+ RPR+KGRF +R +S D
Sbjct: 257 YAEMRPRIKGRFAKRTDSREND 278
>UNIPROTKB|Q9FE92 [details] [associations]
symbol:Hd1 "Heading day 1" species:4530 "Oryza sativa"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0010229
"inflorescence development" evidence=IGI] [GO:0048571 "long-day
photoperiodism" evidence=IEP] [GO:0048572 "short-day
photoperiodism" evidence=IEP] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0009909 GO:GO:0010229 GO:GO:0048571 GO:GO:0048572
EMBL:JN402207 EMBL:AB041840 EMBL:AB041842 Gramene:Q9FE92
Genevestigator:Q9FE92 Uniprot:Q9FE92
Length = 407
Score = 151 (58.2 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 355 LAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPR 414
L P G N S Q+ L REA VLRY+EK++ R F K IRY+ RK A+ RPR
Sbjct: 313 LTPAGAINLFSGPSLQMSLHFSSMDREARVLRYREKKKARKFEKTIRYETRKAYAEARPR 372
Query: 415 MKGRFVRRPNSNAQDE 430
+KGRF +R S+ Q E
Sbjct: 373 IKGRFAKR--SDVQIE 386
>TAIR|locus:2172545 [details] [associations]
symbol:COL5 "CONSTANS-like 5" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB018118 HOGENOM:HOG000238833 EMBL:AY057632
EMBL:AY080747 EMBL:AY114006 EMBL:AY088432 IPI:IPI00531436
RefSeq:NP_568863.1 UniGene:At.20797 IntAct:Q9FHH8 STRING:Q9FHH8
PRIDE:Q9FHH8 EnsemblPlants:AT5G57660.1 GeneID:835872
KEGG:ath:AT5G57660 TAIR:At5g57660 eggNOG:NOG321782
InParanoid:Q9FHH8 OMA:YSSYTAT PhylomeDB:Q9FHH8
ProtClustDB:CLSN2917767 Genevestigator:Q9FHH8 GermOnline:AT5G57660
Uniprot:Q9FHH8
Length = 355
Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 36/86 (41%), Positives = 48/86 (55%)
Query: 351 LDESLAPDGQGNDVSARLAQIDLFSDGGL-------REASVLRYKEKRRTRLFSKKIRYQ 403
++ + PDG N+ S + I + GG REA VLRY+EKR+ R F K IRY
Sbjct: 250 IEYGVVPDGNTNN-SVNRSTITSSTTGGDHQASSMDREARVLRYREKRKNRKFEKTIRYA 308
Query: 404 VRKVNADRRPRMKGRFVRRPNSNAQD 429
RK A+ RPR+KGRF +R + D
Sbjct: 309 SRKAYAESRPRIKGRFAKRTETENDD 334
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 70/295 (23%), Positives = 118/295 (40%)
Query: 152 CENKL--SCQNSGE--VDFQGAN---HNPMEVQISSEFDEDFDA------------ESII 192
CE+ S Q SG +++ G N N V EF E FD +SI
Sbjct: 186 CEDSRYHSDQGSGAQAINYNGHNKLMENGKSVDERDEFKETFDVTMDLIGGIDKRPDSIY 245
Query: 193 LDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELGFGMRSG 252
D+ +E + +G LS+K+ S + + + + + E
Sbjct: 246 KDKSRDECVGPELG-LSLKRSCSVSFENQDESKHQKLSLSDASAFS---RFEESKSAEKA 301
Query: 253 MKALRQVDEGNWWNFPIDVLQISPKFNNSSGTGNSNXXXXXXXXXXXXXXXXPVAESKVS 312
+ AL + G P + + K + G+ ++ V +S V+
Sbjct: 302 VVALEESTSGEP-KTPTESHEKLRKVTSDQGSATTSSNQENIGSSSVSFRNQ-VLQSTVT 359
Query: 313 ELPAKEESPIPKANSGELLLKLQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQID 372
K++SPIP ++ E + + GS +E +A +
Sbjct: 360 N--QKQDSPIPVESNREKAASKEVE--------AGSQSTNEGIAGQSSSTEKPKEEESAK 409
Query: 373 LFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNA 427
REA++++++ KR+ R F KK+RYQ RK A++RPR+KG+FVR NS+A
Sbjct: 410 QRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDA 464
>TAIR|locus:2074587 [details] [associations]
symbol:COL2 "CONSTANS-like 2" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=IMP] [GO:0009658
"chloroplast organization" evidence=IMP] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:AC021640
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677
EMBL:AC068900 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009658 GO:GO:0009909 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:L81120 EMBL:L81119 EMBL:AF370149
EMBL:AY059092 EMBL:AY088779 IPI:IPI00518847 RefSeq:NP_186887.1
UniGene:At.10373 IntAct:Q96502 STRING:Q96502
EnsemblPlants:AT3G02380.1 GeneID:821298 KEGG:ath:AT3G02380
TAIR:At3g02380 eggNOG:NOG281690 InParanoid:Q96502 OMA:RVCEACE
PhylomeDB:Q96502 Genevestigator:Q96502 GermOnline:AT3G02380
Uniprot:Q96502
Length = 347
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/51 (56%), Positives = 37/51 (72%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDE 430
REA VLRY+EK++TR F K IRY RK A+ RPR+KGRF +R + A+ E
Sbjct: 278 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKRIETEAEAE 328
>TAIR|locus:2143206 [details] [associations]
symbol:CO "CONSTANS" species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;NAS] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IGI] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010018 "far-red light signaling pathway"
evidence=IMP] [GO:0010218 "response to far red light" evidence=IMP]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0030154 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
GO:GO:0009908 GO:GO:0009909 EMBL:AL391144 HOGENOM:HOG000238833
ProtClustDB:CLSN2685199 EMBL:X94937 EMBL:BT001926 EMBL:AY086574
IPI:IPI00535908 IPI:IPI00657421 PIR:A56133 RefSeq:NP_001031887.1
RefSeq:NP_197088.1 UniGene:At.18 IntAct:Q39057 MINT:MINT-6608985
STRING:Q39057 EnsemblPlants:AT5G15840.1 GeneID:831441
KEGG:ath:AT5G15840 TAIR:At5g15840 eggNOG:NOG306777
InParanoid:Q39057 KO:K12135 OMA:CHADSAY PhylomeDB:Q39057
Genevestigator:Q39057 GO:GO:0010018 Uniprot:Q39057
Length = 373
Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGKKKVVM 438
REA VLRY+EKR+TR F K IRY RK A+ RPR+ GRF +R +E+G ++M
Sbjct: 306 REARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKREIE--AEEQGFNTMLM 362
>TAIR|locus:2143221 [details] [associations]
symbol:COL1 "CONSTANS-like 1" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0007623 "circadian
rhythm" evidence=IMP] [GO:0009909 "regulation of flower
development" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0048608
"reproductive structure development" evidence=RCA]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006351 GO:GO:0009909
EMBL:AL391144 EMBL:Y10555 EMBL:Y10556 EMBL:AY074369 EMBL:BT002363
IPI:IPI00520338 PIR:T51414 RefSeq:NP_197089.1 UniGene:At.24486
UniGene:At.48027 IntAct:O50055 STRING:O50055
EnsemblPlants:AT5G15850.1 GeneID:831442 KEGG:ath:AT5G15850
TAIR:At5g15850 eggNOG:NOG314154 HOGENOM:HOG000238833
InParanoid:O50055 OMA:QSCERAP PhylomeDB:O50055
ProtClustDB:CLSN2685199 Genevestigator:O50055 GermOnline:AT5G15850
Uniprot:O50055
Length = 355
Score = 134 (52.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRR 422
REA VLRY+EK++ R F K IRY RK A++RPR+KGRF ++
Sbjct: 286 REARVLRYREKKKMRKFEKTIRYASRKAYAEKRPRIKGRFAKK 328
>TAIR|locus:505006360 [details] [associations]
symbol:ZML1 "ZIM-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003700 "sequence-specific DNA binding transcription
factor activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] InterPro:IPR000679 InterPro:IPR010402
InterPro:IPR013088 InterPro:IPR018467 Pfam:PF00320 Pfam:PF09425
PROSITE:PS00344 PROSITE:PS50114 PROSITE:PS51017 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 EMBL:AB023045
GO:GO:0043565 GO:GO:0008270 Gene3D:3.30.50.10 GO:GO:0003700
GO:GO:0006351 EMBL:AB119060 EMBL:AY042817 EMBL:AY064628
EMBL:AY085109 EMBL:AK118169 IPI:IPI00528960 IPI:IPI00530061
RefSeq:NP_566676.1 RefSeq:NP_850618.1 UniGene:At.20286
ProteinModelPortal:Q8GXL7 SMR:Q8GXL7 IntAct:Q8GXL7
EnsemblPlants:AT3G21175.1 GeneID:821670 KEGG:ath:AT3G21175
GeneFarm:3917 TAIR:At3g21175 eggNOG:NOG303027 HOGENOM:HOG000238783
InParanoid:Q8GXL7 OMA:NGRMHIG PhylomeDB:Q8GXL7
ProtClustDB:CLSN2688624 Genevestigator:Q8GXL7 GermOnline:AT3G21175
InterPro:IPR010399 Pfam:PF06200 SMART:SM00979 PROSITE:PS51320
Uniprot:Q8GXL7
Length = 297
Score = 111 (44.1 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERG 432
R AS+LR++EKR+ R F K IRY VRK A R R KG+F +SN D+ G
Sbjct: 143 RLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSN--DDSG 193
Score = 60 (26.2 bits), Expect = 9.9e-06, Sum P(2) = 9.9e-06
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 168 GANHNPMEVQISSEFDEDFDAESIILDEEFEEGIDSIMGNLSVKKDAIESDDGHSQVHNS 227
G NPM VQ D E+ ++D+ + G+D + + S D +V +
Sbjct: 14 GVAQNPMHVQYEDHGLHHIDNENSMMDDHADGGMDEGV-ETDIPSHPGNSADNRGEVVDR 72
Query: 228 NCWYGNPMGIGFGGKL 243
G+ + + F G++
Sbjct: 73 GIENGDQLTLSFQGQV 88
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 334 LQYDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRT 393
LQ+ ++ +G+ S + S +P G R+ ++D RE ++L+++ KR
Sbjct: 495 LQHSQ-MSLQNGQMS-MVHHSWSPAGNPPSNEVRVNKLDR------REEALLKFRRKRNQ 546
Query: 394 RLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDERGK 433
R F KKIRY RK A+RRPR+KG+FVR+ N D G+
Sbjct: 547 RCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQ 586
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 135 (52.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 31/78 (39%), Positives = 50/78 (64%)
Query: 359 GQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGR 418
G G+ S LA + S REA++ ++++KR+ R F KK+RYQ RK A++RPR++G+
Sbjct: 652 GSGSG-SGNLADENKISQ---REAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQ 707
Query: 419 FVRRPNSNAQDERGKKKV 436
FVR+ + A D+ K +
Sbjct: 708 FVRK-TAAATDDNDIKNI 724
Score = 42 (19.8 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 202 DSIMGNLSVKKDAIESDDGHSQVHNSNCWYGNPMGIGFGGKLELG 246
++I GN + ++ S H SN YG+ G+ GG + +G
Sbjct: 593 ETIEGNNNTVNYSVNGSVSGSG-HGSNGPYGSSNGMNAGG-MNMG 635
>TAIR|locus:2091082 [details] [associations]
symbol:COL9 "CONSTANS-like 9" species:3702 "Arabidopsis
thaliana" [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048579 "negative regulation of long-day photoperiodism,
flowering" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA] InterPro:IPR000315 InterPro:IPR010402
Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0007623 GO:GO:0008270 GO:GO:0003700
EMBL:AC009176 eggNOG:NOG248444 HOGENOM:HOG000116529
ProtClustDB:CLSN2684850 EMBL:AY049290 IPI:IPI00522412
RefSeq:NP_001030659.1 RefSeq:NP_001118599.1 RefSeq:NP_187422.1
RefSeq:NP_974250.1 UniGene:At.18337 STRING:Q9SSE5 PRIDE:Q9SSE5
EnsemblPlants:AT3G07650.1 EnsemblPlants:AT3G07650.2
EnsemblPlants:AT3G07650.3 EnsemblPlants:AT3G07650.4 GeneID:819956
KEGG:ath:AT3G07650 TAIR:At3g07650 InParanoid:Q9SSE5 OMA:TSHIQTE
PhylomeDB:Q9SSE5 Genevestigator:Q9SSE5 GermOnline:AT3G07650
GO:GO:0048579 Uniprot:Q9SSE5
Length = 372
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R +V+RYKEK++ R F K++RY RK AD R R+KGRFV+
Sbjct: 315 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVK 356
>TAIR|locus:2168083 [details] [associations]
symbol:AT5G59990 "AT5G59990" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB015475 EMBL:AY924872
IPI:IPI00537727 RefSeq:NP_200807.1 UniGene:At.55631
EnsemblPlants:AT5G59990.1 GeneID:836121 KEGG:ath:AT5G59990
TAIR:At5g59990 HOGENOM:HOG000064609 InParanoid:Q9FJD8 OMA:RESSTVW
PhylomeDB:Q9FJD8 ProtClustDB:CLSN2686501 ArrayExpress:Q9FJD8
Genevestigator:Q9FJD8 Uniprot:Q9FJD8
Length = 241
Score = 116 (45.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQDE 430
++ + +Y+ KR R F+K+I+Y+ RK AD RPR++GRF R + Q++
Sbjct: 163 KKEKIEKYRSKRNLRNFNKRIKYECRKTLADSRPRIRGRFARNDEISQQEQ 213
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 189 ESIILDEEFEEGIDSIMGNLSVKKDAIESDDG 220
ES+++ + GN + D + DDG
Sbjct: 89 ESLVMQRSVSSH-NGFSGNYTAAHDFVNDDDG 119
>TAIR|locus:2088748 [details] [associations]
symbol:BBX10 "B-box domain protein 10" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AP000739 HOGENOM:HOG000116529 EMBL:AB493626 IPI:IPI00533145
RefSeq:NP_188826.1 UniGene:At.53422 EnsemblPlants:AT3G21880.1
GeneID:821743 KEGG:ath:AT3G21880 TAIR:At3g21880 eggNOG:NOG290178
InParanoid:Q9LJ44 OMA:KKTRTFG PhylomeDB:Q9LJ44
ProtClustDB:CLSN2685267 Genevestigator:Q9LJ44 Uniprot:Q9LJ44
Length = 364
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 26/50 (52%), Positives = 32/50 (64%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPNSNAQD 429
R + LRYKEK+ R F K+IRY RK AD R R+KGRFV+ +S D
Sbjct: 307 RNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDSYDYD 356
>TAIR|locus:2129860 [details] [associations]
symbol:BBX9 "B-box domain protein 9" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006863 "purine
nucleobase transport" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:Z97338 EMBL:AL161541 GO:GO:0046872
GO:GO:0008270 GO:GO:0003700 HOGENOM:HOG000116529 IPI:IPI00529586
PIR:F71416 RefSeq:NP_193260.2 UniGene:At.54335
EnsemblPlants:AT4G15250.1 GeneID:827191 KEGG:ath:AT4G15250
TAIR:At4g15250 eggNOG:NOG321931 InParanoid:O23379 OMA:YQDCGIS
PhylomeDB:O23379 ProtClustDB:CLSN2915042 Genevestigator:O23379
GermOnline:AT4G15250 Uniprot:O23379
Length = 330
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 379 LREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
LR+ + RYK+K+ R+F K+IRY RK AD R R+KGRFV+
Sbjct: 275 LRDEAKKRYKQKKSKRMFGKQIRYASRKARADTRKRVKGRFVK 317
>TAIR|locus:2051099 [details] [associations]
symbol:AT2G33350 "AT2G33350" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR010402 Pfam:PF06203 PROSITE:PS51017
EMBL:CP002685 ProtClustDB:CLSN2680683 EMBL:AY600556 IPI:IPI00520380
RefSeq:NP_180893.2 UniGene:At.50819 EnsemblPlants:AT2G33350.1
GeneID:817898 KEGG:ath:AT2G33350 TAIR:At2g33350 InParanoid:Q6E267
OMA:GSEINKP PhylomeDB:Q6E267 Genevestigator:Q6E267 Uniprot:Q6E267
Length = 410
Score = 112 (44.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R+ + RY +KR R F+KKI+Y RK AD RPR++GRF +
Sbjct: 311 RKEKIRRYMKKRNERNFNKKIKYACRKTLADSRPRVRGRFAK 352
Score = 51 (23.0 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 30/139 (21%), Positives = 55/139 (39%)
Query: 109 QQFFDESSELLLPFRVIDDSGFLLHQPILDKPRFPLEPKVTKFCENKLSCQNSGEVDFQG 168
Q+ F++SSE+ +++ SG F T EN + N+ + Q
Sbjct: 37 QETFNQSSEVTSTSNILEKSG-----------SFHSNTNTTTTTENSNNNNNNKNTNLQD 85
Query: 169 ANHNPMEVQISSEFD--EDFDAESIILDEEFEEG------IDSIMGNLSVKKDAIESDDG 220
+ +S FD EDF+ + I +F ID ++ ++ +D + G
Sbjct: 86 DEDDNNNTDLSIIFDSQEDFEND-ITASIDFSSSSLQYPVIDHLL--TAISQDQFDFSSG 142
Query: 221 HSQVHNS-NCWY-GNPMGI 237
+H N Y G+P+ +
Sbjct: 143 LQVIHQPPNISYSGDPLSL 161
>TAIR|locus:2164718 [details] [associations]
symbol:BBX8 "B-box domain protein 8" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005886 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AB023039 EMBL:AY039957 EMBL:AY142607
IPI:IPI00527282 RefSeq:NP_199636.1 UniGene:At.7080
ProteinModelPortal:Q9LUA9 IntAct:Q9LUA9 STRING:Q9LUA9
EnsemblPlants:AT5G48250.1 GeneID:834878 KEGG:ath:AT5G48250
TAIR:At5g48250 eggNOG:NOG248444 HOGENOM:HOG000116529
InParanoid:Q9LUA9 OMA:ESACEQG PhylomeDB:Q9LUA9
ProtClustDB:CLSN2684850 Genevestigator:Q9LUA9 GermOnline:AT5G48250
Uniprot:Q9LUA9
Length = 373
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R +V+RYKEK++ R F K++RY RK AD R R+KGRFV+
Sbjct: 316 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVK 357
>TAIR|locus:2051104 [details] [associations]
symbol:BBX12 "B-box domain protein 12" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR000315 InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203
PROSITE:PS50119 PROSITE:PS51017 SMART:SM00336 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0003700 EMBL:AC002332 EMBL:BT002067 EMBL:AY128321
EMBL:BT006572 IPI:IPI00527026 IPI:IPI00539934 PIR:C84746
RefSeq:NP_850211.1 RefSeq:NP_973589.1 UniGene:At.43493
IntAct:O22800 STRING:O22800 EnsemblPlants:AT2G33500.1 GeneID:817915
KEGG:ath:AT2G33500 TAIR:At2g33500 eggNOG:NOG269245
HOGENOM:HOG000243233 InParanoid:O22800 OMA:ATHERSA PhylomeDB:O22800
ProtClustDB:CLSN2713949 Genevestigator:O22800 Uniprot:O22800
Length = 402
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R+ ++ RYKEK++TR + K IRY+ RK A+ R R+KGRFV+
Sbjct: 357 RDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVK 398
>TAIR|locus:2010504 [details] [associations]
symbol:BBX13 "B-box domain protein 13" species:3702
"Arabidopsis thaliana" [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF06203 PROSITE:PS50119 PROSITE:PS51017
SMART:SM00336 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0003700 EMBL:AC069471
HOGENOM:HOG000243233 ProtClustDB:CLSN2713949 EMBL:AY037206
EMBL:BT002681 IPI:IPI00538865 PIR:B86406 RefSeq:NP_174126.1
UniGene:At.19754 ProteinModelPortal:Q9C7E8 SMR:Q9C7E8 IntAct:Q9C7E8
STRING:Q9C7E8 PRIDE:Q9C7E8 EnsemblPlants:AT1G28050.1 GeneID:839698
KEGG:ath:AT1G28050 TAIR:At1g28050 eggNOG:NOG245106
InParanoid:Q9C7E8 OMA:SCGRYKQ PhylomeDB:Q9C7E8
Genevestigator:Q9C7E8 GermOnline:AT1G28050 Uniprot:Q9C7E8
Length = 433
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 23/42 (54%), Positives = 31/42 (73%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R ++ RYKEKR+TR + K IRY+ RK AD R R++GRFV+
Sbjct: 385 RGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVK 426
>TAIR|locus:2043288 [details] [associations]
symbol:AT2G47890 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009611 "response to wounding"
evidence=RCA] [GO:0009805 "coumarin biosynthetic process"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] InterPro:IPR000315
InterPro:IPR010402 Pfam:PF00643 Pfam:PF06203 PROSITE:PS50119
PROSITE:PS51017 SMART:SM00336 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0003700
EMBL:AC005309 EMBL:AC006072 EMBL:BT023413 IPI:IPI00543399
PIR:G84920 RefSeq:NP_182310.1 UniGene:At.12948 STRING:O82256
EnsemblPlants:AT2G47890.1 GeneID:819401 KEGG:ath:AT2G47890
TAIR:At2g47890 eggNOG:NOG271369 HOGENOM:HOG000240051
InParanoid:O82256 OMA:CSRHARA PhylomeDB:O82256
ProtClustDB:CLSN2683730 Genevestigator:O82256 Uniprot:O82256
Length = 332
Score = 114 (45.2 bits), Expect = 0.00082, P = 0.00082
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVR 421
R +++ RYKEK+++R + K IRY+ RKV A+ R R++GRF +
Sbjct: 287 RNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAK 328
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 442 406 0.00078 118 3 11 23 0.45 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 29
No. of states in DFA: 603 (64 KB)
Total size of DFA: 250 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.59u 0.13s 35.72t Elapsed: 00:00:01
Total cpu time: 35.59u 0.13s 35.72t Elapsed: 00:00:01
Start: Fri May 10 23:18:14 2013 End: Fri May 10 23:18:15 2013