Query 013500
Match_columns 442
No_of_seqs 170 out of 388
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 04:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06203 CCT: CCT motif; Inte 99.7 5.5E-19 1.2E-23 132.2 2.7 45 380-424 1-45 (45)
2 KOG1601 GATA-4/5/6 transcripti 96.4 0.0012 2.5E-08 58.4 1.1 41 377-417 290-330 (340)
3 PF09425 CCT_2: Divergent CCT 93.1 0.057 1.2E-06 37.5 1.6 24 379-403 3-26 (27)
4 smart00521 CBF CCAAT-Binding t 24.0 78 0.0017 26.1 2.7 25 397-421 36-61 (62)
5 PF02045 CBFB_NFYA: CCAAT-bind 20.5 61 0.0013 26.4 1.5 22 398-419 36-58 (58)
6 PF11302 DUF3104: Protein of u 16.3 71 0.0015 27.1 1.0 26 247-272 4-37 (75)
7 COG5614 Bacteriophage head-tai 11.4 56 0.0012 29.5 -1.0 62 336-421 24-85 (109)
8 PF13653 GDPD_2: Glycerophosph 11.3 96 0.0021 21.9 0.4 14 194-207 14-27 (30)
9 KOG2422 Uncharacterized conser 11.1 1.3E+02 0.0029 34.1 1.5 11 294-304 94-104 (665)
10 PF03286 Pox_Ag35: Pox virus A 11.1 2E+02 0.0044 28.2 2.6 9 263-271 35-43 (200)
No 1
>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction. The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding
Probab=99.74 E-value=5.5e-19 Score=132.22 Aligned_cols=45 Identities=58% Similarity=1.007 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhccCCCcccchhhhcccccCCCcCcccccCCC
Q 013500 380 REASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKGRFVRRPN 424 (442)
Q Consensus 380 Rea~v~RYreKRk~R~f~KkIRY~~RK~~Ae~RPRvKGRFVk~~~ 424 (442)
|+++|+||+|||++|+|+|+|+|+|||.+|+.|||||||||+.++
T Consensus 1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~e 45 (45)
T PF06203_consen 1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKSE 45 (45)
T ss_pred CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCCC
Confidence 789999999999999999999999999999999999999999864
No 2
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=96.43 E-value=0.0012 Score=58.38 Aligned_cols=41 Identities=54% Similarity=0.821 Sum_probs=39.4
Q ss_pred chhHHHHHHHHHHHhhhccCCCcccchhhhcccccCCCcCc
Q 013500 377 GGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKG 417 (442)
Q Consensus 377 ~~~Rea~v~RYreKRk~R~f~KkIRY~~RK~~Ae~RPRvKG 417 (442)
...|++.+.||++++..|.|.++++|..|+.+|+.|||+||
T Consensus 290 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (340)
T KOG1601|consen 290 SHQRVAEVRRYRESRDGRYFDKGIRYASRKSNAESRPRLKG 330 (340)
T ss_pred cchHHHHHhhccCccCCcccccccccccccccchhcccccc
Confidence 35899999999999999999999999999999999999999
No 3
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=93.08 E-value=0.057 Score=37.55 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHhhhccCCCcccch
Q 013500 379 LREASVLRYKEKRRTRLFSKKIRYQ 403 (442)
Q Consensus 379 ~Rea~v~RYreKRk~R~f~KkIRY~ 403 (442)
.|.+.|+||.||||.|... +.-|.
T Consensus 3 aRK~SLqRFLeKRK~R~~~-~~PY~ 26 (27)
T PF09425_consen 3 ARKASLQRFLEKRKDRLAA-KSPYQ 26 (27)
T ss_dssp ---HHHHHHHHHH------------
T ss_pred hHHHHHHHHHHHHHHhhcc-CCCCC
Confidence 5999999999999999987 66664
No 4
>smart00521 CBF CCAAT-Binding transcription Factor.
Probab=23.96 E-value=78 Score=26.15 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.7
Q ss_pred CCcccchhhhcccccCCC-cCccccc
Q 013500 397 SKKIRYQVRKVNADRRPR-MKGRFVR 421 (442)
Q Consensus 397 ~KkIRY~~RK~~Ae~RPR-vKGRFVk 421 (442)
.|..-|++|-+.|-+||| --|||.+
T Consensus 36 rkpYlhESRH~HAm~R~Rg~gGRFl~ 61 (62)
T smart00521 36 RKPYLHESRHLHAMRRPRGSGGRFLN 61 (62)
T ss_pred cCCcccchhHHHHHccCcCCCCCCCC
Confidence 467889999999999999 5589975
No 5
>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.49 E-value=61 Score=26.40 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=18.5
Q ss_pred CcccchhhhcccccCCCc-Cccc
Q 013500 398 KKIRYQVRKVNADRRPRM-KGRF 419 (442)
Q Consensus 398 KkIRY~~RK~~Ae~RPRv-KGRF 419 (442)
|+.-|++|-+.|-.|||- -|||
T Consensus 36 k~YlheSRH~HA~~R~Rg~gGRF 58 (58)
T PF02045_consen 36 KPYLHESRHKHAMRRPRGPGGRF 58 (58)
T ss_pred HHHHHHHHHHHHHcCccCCCCCC
Confidence 556899999999999994 5777
No 6
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=16.35 E-value=71 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.516 Sum_probs=15.7
Q ss_pred ccccccc-------ccccccCCCCcccccc-ccc
Q 013500 247 FGMRSGM-------KALRQVDEGNWWNFPI-DVL 272 (442)
Q Consensus 247 lg~r~~~-------~ALR~~dd~~wW~~p~-dv~ 272 (442)
|+++.|+ +..-+..+.+|||-=+ .+.
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ 37 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCE 37 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEEEEEe
Confidence 4556663 2333455789999766 443
No 7
>COG5614 Bacteriophage head-tail adaptor [General function prediction only]
Probab=11.41 E-value=56 Score=29.51 Aligned_cols=62 Identities=21% Similarity=0.310 Sum_probs=37.0
Q ss_pred hhhHhhhhCCCCCCCCCCCCCCCCCCCcccccccccccCCCchhHHHHHHHHHHHhhhccCCCcccchhhhcccccCCCc
Q 013500 336 YDDVLNAWSGKGSPFLDESLAPDGQGNDVSARLAQIDLFSDGGLREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRM 415 (442)
Q Consensus 336 Ye~Vl~AWs~~GS~~~d~~~~Pdss~~~~~a~~~~i~lf~~~~~Rea~v~RYreKRk~R~f~KkIRY~~RK~~Ae~RPRv 415 (442)
|.+.+++|-+-+++|+....... .+..+ . .+|.. +.--| =.|||. +-..|..|-++
T Consensus 24 ~g~~~e~w~d~~t~WAai~~~s~---kE~~a--A---------gaE~~------~~t~r---iwIRyr-~DItA~~Ri~~ 79 (109)
T COG5614 24 AGEMTEEWVDCGTLWAAIRGRSG---KEFMA--A---------GAEMA------QATIR---IWIRYR-RDITAASRLHV 79 (109)
T ss_pred cCchhHHHhhhccHhhhhcCcch---hHHHh--c---------chhhc------eeEEE---EEEEee-ecccceeEEEE
Confidence 56899999999999998763221 11100 0 00000 00011 248887 78889999888
Q ss_pred Cccccc
Q 013500 416 KGRFVR 421 (442)
Q Consensus 416 KGRFVk 421 (442)
.+|-.-
T Consensus 80 ~~Riln 85 (109)
T COG5614 80 LSRILN 85 (109)
T ss_pred cCeeEE
Confidence 887543
No 8
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=11.29 E-value=96 Score=21.95 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=9.8
Q ss_pred chHHhhhhhhhccC
Q 013500 194 DEEFEEGIDSIMGN 207 (442)
Q Consensus 194 dee~eeGIDsIMG~ 207 (442)
-+.++.|+|+||=.
T Consensus 14 ~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 14 RELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHT-SEEEES
T ss_pred HHHHHcCCCEeeCC
Confidence 46678899999943
No 9
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=11.13 E-value=1.3e+02 Score=34.10 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=4.2
Q ss_pred hhhhhcccCCc
Q 013500 294 EKRKKKVGKEK 304 (442)
Q Consensus 294 kKKkkKkk~~k 304 (442)
||||||||+.+
T Consensus 94 KK~krkkKk~~ 104 (665)
T KOG2422|consen 94 KKKKRKKKKST 104 (665)
T ss_pred hhhhhcccccc
Confidence 33333333333
No 10
>PF03286 Pox_Ag35: Pox virus Ag35 surface protein; InterPro: IPR004966 The Pox virus Ag35 surface protein is an evelope protein known as protein H5.; GO: 0019031 viral envelope
Probab=11.12 E-value=2e+02 Score=28.19 Aligned_cols=9 Identities=44% Similarity=0.383 Sum_probs=6.0
Q ss_pred Ccccccccc
Q 013500 263 NWWNFPIDV 271 (442)
Q Consensus 263 ~wW~~p~dv 271 (442)
+==-||.|+
T Consensus 35 ~DdiFP~DI 43 (200)
T PF03286_consen 35 NDDIFPEDI 43 (200)
T ss_pred ccccCcccc
Confidence 444688877
Done!