Query 013500
Match_columns 442
No_of_seqs 170 out of 388
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 11:44:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogl_Q JAZ1 incomplete degron 90.0 0.16 5.6E-06 32.7 2.1 18 378-395 4-21 (21)
2 3ogk_Q JAZ1 incomplete degron 89.1 0.13 4.5E-06 33.4 1.2 19 380-398 1-19 (22)
3 2dhy_A CUE domain-containing p 52.2 9.1 0.00031 30.1 2.8 26 54-79 7-32 (67)
4 4g9j_C Synthetic peptide, seri 35.3 15 0.00053 24.3 1.4 22 52-73 3-24 (26)
5 4g92_A HAPB protein; transcrip 35.0 26 0.00088 27.9 2.9 27 397-423 36-63 (64)
6 3ukw_C Bimax1 peptide; arm rep 33.7 13 0.00043 25.1 0.8 10 53-62 3-12 (28)
7 2i0n_A Class VII unconventiona 25.2 56 0.0019 24.8 3.2 43 238-280 18-72 (80)
8 3ioz_B T-cell surface glycopro 17.3 35 0.0012 25.5 0.6 8 60-67 19-26 (45)
9 3kdf_A Replication protein A 1 17.0 53 0.0018 28.0 1.7 22 63-85 97-118 (121)
10 2pi2_E Replication protein A 1 10.1 1.1E+02 0.0037 26.9 1.6 20 63-83 118-137 (142)
No 1
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=89.99 E-value=0.16 Score=32.68 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHhhhcc.....
Q 013500 378 GLREASVLRYKEKRRTRL..... 395 (442)
Q Consensus 378 ~~Rea~v~RYreKRk~R~..... 395 (442)
..|.++|+||.||||.|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 369999999999999874
No 2
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=89.07 E-value=0.13 Score=33.38 Aligned_cols=19 Identities=53% Similarity=0.723 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhhhccCCC
Q 013500 380 REASVLRYKEKRRTRLFSK 398 (442)
Q Consensus 380 Rea~v~RYreKRk~R~f~K 398 (442)
|.+.|+||.||||.|...+
T Consensus 1 Rk~SLqRFleKRk~R~~~~ 19 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK 19 (26)
T ss_pred CchhHHHHHHHHHHHhhcc
Confidence 6789999999999998654
No 3
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.15 E-value=9.1 Score=30.13 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=24.0
Q ss_pred CCCCCCCCChhHHHHHHHHHhhCCCc
Q 013500 54 ARTPRKRPNQTYNEAAALLSTACPNI 79 (442)
Q Consensus 54 pRTpRKRPNQtYNEAAaLLstayPnv 79 (442)
.|+.|+.+...++++..-|..|+|+|
T Consensus 7 ~~~~~~~~~~~~~~~v~~L~~MFP~l 32 (67)
T 2dhy_A 7 GRPARQVRRLEFNQAMDDFKTMFPNM 32 (67)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHCSSS
T ss_pred CCcchhccCCCHHHHHHHHHHHCCCC
Confidence 37889999999999999999999987
No 4
>4g9j_C Synthetic peptide, serine/threonine-protein phosphatase PP1-alpha Ca subunit; activating peptide; 3.10A {Homo sapiens}
Probab=35.28 E-value=15 Score=24.32 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=14.5
Q ss_pred cCCCCCCCCCChhHHHHHHHHH
Q 013500 52 RKARTPRKRPNQTYNEAAALLS 73 (442)
Q Consensus 52 krpRTpRKRPNQtYNEAAaLLs 73 (442)
|||...||----||-|||.++.
T Consensus 3 krpkrkrknarvtfaeaaeii~ 24 (26)
T 4g9j_C 3 KRPKRKRKNARVTFAEAAEIIX 24 (26)
T ss_pred cccccccccceeeHHHhhhHhh
Confidence 4444444444569999998864
No 5
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=35.00 E-value=26 Score=27.88 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=22.8
Q ss_pred CCcccchhhhcccccCCC-cCcccccCC
Q 013500 397 SKKIRYQVRKVNADRRPR-MKGRFVRRP 423 (442)
Q Consensus 397 ~KkIRY~~RK~~Ae~RPR-vKGRFVk~~ 423 (442)
.|..-|++|-..|-.|+| -.|||.+..
T Consensus 36 rk~YlhESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 36 RKPYLHESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CCSCSCHHHHHHHHHSCBCTTSCBCCCC
T ss_pred ccCcchhHHHHHHhcCCcCCCCccccCC
Confidence 355789999999999999 569998764
No 6
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=33.69 E-value=13 Score=25.11 Aligned_cols=10 Identities=60% Similarity=1.046 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q 013500 53 KARTPRKRPN 62 (442)
Q Consensus 53 rpRTpRKRPN 62 (442)
|.|.|||||-
T Consensus 3 rrrrprkrpl 12 (28)
T 3ukw_C 3 RRRRPRKRPL 12 (28)
T ss_dssp ----CCCCCC
T ss_pred cccccccCCc
Confidence 5677889884
No 7
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=25.21 E-value=56 Score=24.77 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=24.0
Q ss_pred cCCCceeeccccccc--cccccccCCCCccc---------ccc-cccccCcCCCC
Q 013500 238 GFGGKLELGFGMRSG--MKALRQVDEGNWWN---------FPI-DVLQISPKFNN 280 (442)
Q Consensus 238 ~f~gk~~lGlg~r~~--~~ALR~~dd~~wW~---------~p~-dv~~Isp~~~~ 280 (442)
.|.+.-.=-|.|+.| +.-|..++++.||. ||. -|..|.+..++
T Consensus 18 dy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~ 72 (80)
T 2i0n_A 18 DYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSDVPP 72 (80)
T ss_dssp CBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSCCCC
T ss_pred CCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCCCCC
Confidence 344433333667666 34455555555995 688 56666554433
No 8
>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membran myristate, viral immunoevasion, virulence; 3.70A {Homo sapiens}
Probab=17.30 E-value=35 Score=25.48 Aligned_cols=8 Identities=63% Similarity=0.800 Sum_probs=6.5
Q ss_pred CCChhHHH
Q 013500 60 RPNQTYNE 67 (442)
Q Consensus 60 RPNQtYNE 67 (442)
=+||+|||
T Consensus 19 ~~n~~Yne 26 (45)
T 3ioz_B 19 GQNQLYNE 26 (45)
T ss_pred ccchHHHH
Confidence 36899998
No 9
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=17.04 E-value=53 Score=27.99 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhhCCCccccCCc
Q 013500 63 QTYNEAAALLSTACPNIFSTKHL 85 (442)
Q Consensus 63 QtYNEAAaLLstayPnvF~~k~~ 85 (442)
..|||+..|... ||.+|+....
T Consensus 97 ~~yn~lv~l~~~-~~~lf~~~~~ 118 (121)
T 3kdf_A 97 GLYNEAVKIIHD-FPQFYPLGIV 118 (121)
T ss_dssp HHHHHHHHHHHH-CGGGSCCC--
T ss_pred HHHHHHHHHHhc-CCcccccccc
Confidence 799999999988 9999987543
No 10
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=10.06 E-value=1.1e+02 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHhhCCCccccC
Q 013500 63 QTYNEAAALLSTACPNIFSTK 83 (442)
Q Consensus 63 QtYNEAAaLLstayPnvF~~k 83 (442)
.+||++..|.. .||.+|+-.
T Consensus 118 ~~yn~lv~l~~-~f~~lF~~~ 137 (142)
T 2pi2_E 118 GLYNEAVKIIH-DFPQFYPLG 137 (142)
T ss_dssp HHHHHHHHHHH-HCGGGSCSS
T ss_pred HHHHHHHHHHH-hCccceEec
Confidence 68999999988 999999754
Done!