Query 013500
Match_columns 442
No_of_seqs 170 out of 388
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 11:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013500.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013500hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vyua1 b.34.2.1 (A:39-174) SH 17.0 17 0.0012 29.6 0.6 24 245-268 45-69 (136)
2 d2af8a_ a.28.1.1 (A:) Actinorh 15.8 23 0.0017 25.8 1.1 10 198-207 37-46 (86)
3 d1t0ha_ b.34.2.1 (A:) SH3-like 15.7 21 0.0015 27.7 0.9 22 245-267 43-66 (96)
4 d1nq4a_ a.28.1.1 (A:) Oxytetra 15.2 24 0.0017 26.3 1.1 24 184-207 21-45 (95)
5 d2pi2e1 b.40.4.3 (E:3-117) Rep 13.4 35 0.0025 26.8 1.6 19 63-82 95-113 (115)
6 d1opka1 b.34.2.1 (A:83-139) Ab 11.6 35 0.0025 23.3 1.0 21 247-267 17-39 (57)
7 d1cq3a_ b.27.1.1 (A:) Soluble 11.1 88 0.0064 27.7 3.7 58 5-76 65-125 (224)
8 d1ue9a_ b.34.2.1 (A:) Intersec 10.1 66 0.0048 22.7 2.1 19 247-266 24-44 (80)
9 d1imua_ d.204.1.1 (A:) Ribosom 8.2 75 0.0055 23.6 1.8 22 381-402 82-103 (107)
10 d3eeqa1 c.151.1.1 (A:215-335) 8.2 46 0.0033 26.1 0.5 12 242-253 1-12 (121)
No 1
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=17.02 E-value=17 Score=29.63 Aligned_cols=24 Identities=13% Similarity=0.364 Sum_probs=14.9
Q ss_pred ecccccccc-ccccccCCCCccccc
Q 013500 245 LGFGMRSGM-KALRQVDEGNWWNFP 268 (442)
Q Consensus 245 lGlg~r~~~-~ALR~~dd~~wW~~p 268 (442)
.||.|+.|- =.+..-+|.+||.-=
T Consensus 45 ~~LsF~~gdil~v~~~~d~~WW~~r 69 (136)
T d1vyua1 45 SGVNFEAKDFLHIKEKYSNDWWIGR 69 (136)
T ss_dssp CBCEECTTCEEEEEEECSSSEEEEE
T ss_pred cccCCCCCCEEEEEeccCCCcEEEE
Confidence 467888773 122344577899863
No 2
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]}
Probab=15.85 E-value=23 Score=25.83 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=7.8
Q ss_pred hhhhhhhccC
Q 013500 198 EEGIDSIMGN 207 (442)
Q Consensus 198 eeGIDsIMG~ 207 (442)
+-|+||||.-
T Consensus 37 dlG~DSl~~~ 46 (86)
T d2af8a_ 37 DIGYDSLALM 46 (86)
T ss_dssp HHTCSSHHHH
T ss_pred HcCCCHHHHH
Confidence 4599999875
No 3
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=15.66 E-value=21 Score=27.67 Aligned_cols=22 Identities=9% Similarity=0.428 Sum_probs=14.4
Q ss_pred ecccccccc--ccccccCCCCcccc
Q 013500 245 LGFGMRSGM--KALRQVDEGNWWNF 267 (442)
Q Consensus 245 lGlg~r~~~--~ALR~~dd~~wW~~ 267 (442)
.||.|+.|- .-|.++ |.+||.-
T Consensus 43 ~~LsF~~GDii~v~~~~-d~~WW~g 66 (96)
T d1t0ha_ 43 MAISFEAKDFLHVKEKF-NNDWWIG 66 (96)
T ss_dssp CBCCBCTTCEEEEEEEC-SSSEEEE
T ss_pred ccccCCCCCEEEEeeee-CCCceEE
Confidence 468888883 445555 4569974
No 4
>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]}
Probab=15.17 E-value=24 Score=26.28 Aligned_cols=24 Identities=25% Similarity=0.109 Sum_probs=13.8
Q ss_pred ccCCccccccchH-HhhhhhhhccC
Q 013500 184 EDFDAESIILDEE-FEEGIDSIMGN 207 (442)
Q Consensus 184 e~FDaeSi~Ldee-~eeGIDsIMG~ 207 (442)
.+-|.+.|-+|.. .+-|+||||.-
T Consensus 21 ~~~~~~~i~~d~~f~dlG~DSl~~~ 45 (95)
T d1nq4a_ 21 ESIDLGGDVEDVAFDALGYDSLALL 45 (95)
T ss_dssp STTCSCSCCSSSCHHHHTCCSHHHH
T ss_pred hCCChhhcccCCCHHHcCCcHHHHH
Confidence 3444555444433 35599999865
No 5
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.38 E-value=35 Score=26.75 Aligned_cols=19 Identities=26% Similarity=0.576 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhhCCCcccc
Q 013500 63 QTYNEAAALLSTACPNIFST 82 (442)
Q Consensus 63 QtYNEAAaLLstayPnvF~~ 82 (442)
.+|||+..|+. .||++|+-
T Consensus 95 ~~yn~lv~l~~-~~~~~f~~ 113 (115)
T d2pi2e1 95 GLYNEAVKIIH-DFPQFYPL 113 (115)
T ss_dssp HHHHHHHHHHH-HCGGGSCS
T ss_pred HHHHHHHHHHH-hChhhccc
Confidence 58999999998 69999984
No 6
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.64 E-value=35 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.583 Sum_probs=13.4
Q ss_pred cccccc--cccccccCCCCcccc
Q 013500 247 FGMRSG--MKALRQVDEGNWWNF 267 (442)
Q Consensus 247 lg~r~~--~~ALR~~dd~~wW~~ 267 (442)
|.|+.| +.-|.+++++.||..
T Consensus 17 Ls~~~Gd~i~vl~~~~~~~W~~~ 39 (57)
T d1opka1 17 LSITKGEKLRVLGYNHNGEWCEA 39 (57)
T ss_dssp CCBCTTCEEEEEEECTTSSEEEE
T ss_pred cCCCCCCEEEEeEecCCCCEEEE
Confidence 566666 356666667778853
No 7
>d1cq3a_ b.27.1.1 (A:) Soluble secreted chemokine inhibitor, VCCI {Cowpox virus [TaxId: 10243]}
Probab=11.11 E-value=88 Score=27.66 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=38.8
Q ss_pred cCCCCceeeeeeeeeecCCCCCCCCCCCCCCCCcccccCCCC---cceeecCCCCCCCCCChhHHHHHHHHHhhC
Q 013500 5 LSGGGRTYALDLEIIKSPSHSTGTSHTSSSPLSTLSEASNSP---LAISTRKARTPRKRPNQTYNEAAALLSTAC 76 (442)
Q Consensus 5 i~~gg~~~~~dLe~vKs~s~st~~~~~sSSpSSTlSEaSns~---~sis~krpRTpRKRPNQtYNEAAaLLstay 76 (442)
+.||| ++.++.+.|-+. =.+|||++|-- ..+|---|-+----|.-||.||-|||-.--
T Consensus 65 VvgGG--Ln~sfgft~Cp~------------~~sIse~~ng~tV~arlsS~~Pw~~~~~psitreEAlall~~Ce 125 (224)
T d1cq3a_ 65 VVGGG--LTMDFGFTKCPK------------ISSISEYSDGNTVNARLSSVSPGQGKDSPAITREEALSMIKDCE 125 (224)
T ss_dssp EEETT--EEEEEEEESCCC------------CCEEEEEEETTEEEEEEECCCTTSSSCCCCEEHHHHHHHHHHCE
T ss_pred EEcCc--eEEEecccCCCc------------eeeEEeecCCCeEEEEEeecCCCCCCCCccccHHHHHHHHhhhe
Confidence 56787 888888887741 13467888844 344444444433348999999999997643
No 8
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.12 E-value=66 Score=22.73 Aligned_cols=19 Identities=21% Similarity=0.824 Sum_probs=11.7
Q ss_pred cccccc--cccccccCCCCccc
Q 013500 247 FGMRSG--MKALRQVDEGNWWN 266 (442)
Q Consensus 247 lg~r~~--~~ALR~~dd~~wW~ 266 (442)
|.|+.| +.-|+.+ |..||.
T Consensus 24 Ls~~~Gd~i~Vl~~~-~~~Ww~ 44 (80)
T d1ue9a_ 24 LSLAPGQLILILKKN-TSGWWQ 44 (80)
T ss_dssp CCCCTTCEEEEEEEC-SSSEEE
T ss_pred eeEcCCCEEEEEEEe-CCCeEE
Confidence 566666 3556655 457995
No 9
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=8.21 E-value=75 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhccCCCcccc
Q 013500 381 EASVLRYKEKRRTRLFSKKIRY 402 (442)
Q Consensus 381 ea~v~RYreKRk~R~f~KkIRY 402 (442)
+..|.||++|.+.+.-...+++
T Consensus 82 ~rqLrk~k~K~~~~~~~~~~k~ 103 (107)
T d1imua_ 82 ERQLNKLQHKSESRRADERLKD 103 (107)
T ss_dssp HHHHHHHHHCCSCCSSCCCSCC
T ss_pred HHHHHHHHHHHHHhcccchhhh
Confidence 3467999999887766555555
No 10
>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.18 E-value=46 Score=26.14 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=9.7
Q ss_pred ceeecccccccc
Q 013500 242 KLELGFGMRSGM 253 (442)
Q Consensus 242 k~~lGlg~r~~~ 253 (442)
|+.+|+|+|++.
T Consensus 1 ri~vGiGcrrg~ 12 (121)
T d3eeqa1 1 KISIGIGSKKDV 12 (121)
T ss_dssp EEEEEEEECSSC
T ss_pred CEEEEeccCCCC
Confidence 356899999995
Done!