Query 013502
Match_columns 442
No_of_seqs 153 out of 234
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 5.8E-90 1.3E-94 699.9 30.2 380 33-417 1-386 (447)
2 PF04111 APG6: Autophagy prote 100.0 1.3E-75 2.9E-80 583.7 21.9 247 168-415 1-255 (314)
3 PF10186 Atg14: UV radiation r 99.5 6.1E-12 1.3E-16 121.6 25.5 245 166-414 10-273 (302)
4 KOG2751 Beclin-like protein [S 98.9 1.2E-09 2.6E-14 113.4 6.2 246 102-377 35-307 (447)
5 KOG2896 UV radiation resistanc 98.8 1.1E-06 2.4E-11 90.3 22.6 152 248-415 134-310 (377)
6 PF04111 APG6: Autophagy prote 97.3 0.093 2E-06 53.6 22.7 207 189-413 42-305 (314)
7 KOG0250 DNA repair protein RAD 96.8 0.063 1.4E-06 62.3 18.7 84 220-303 382-466 (1074)
8 COG1579 Zn-ribbon protein, pos 96.8 0.14 3.1E-06 50.8 18.3 29 177-205 11-39 (239)
9 TIGR02169 SMC_prok_A chromosom 96.4 0.12 2.6E-06 59.0 17.1 66 233-298 436-501 (1164)
10 PRK03918 chromosome segregatio 96.2 0.3 6.4E-06 55.1 18.6 24 263-286 304-327 (880)
11 PF04156 IncA: IncA protein; 96.1 0.42 9E-06 44.4 16.2 98 176-279 88-185 (191)
12 TIGR02169 SMC_prok_A chromosom 95.9 0.47 1E-05 54.4 18.9 21 324-344 526-547 (1164)
13 PHA02562 46 endonuclease subun 95.9 0.22 4.8E-06 53.1 15.3 14 166-179 283-296 (562)
14 COG1196 Smc Chromosome segrega 95.7 0.19 4E-06 59.3 14.8 97 239-343 440-540 (1163)
15 PF04849 HAP1_N: HAP1 N-termin 95.7 0.65 1.4E-05 47.8 16.8 128 176-303 160-306 (306)
16 PRK11637 AmiB activator; Provi 95.5 0.34 7.4E-06 50.9 14.3 73 179-257 43-115 (428)
17 COG1579 Zn-ribbon protein, pos 95.4 1.1 2.4E-05 44.6 16.9 100 215-326 94-201 (239)
18 TIGR02168 SMC_prok_B chromosom 95.3 1.4 3E-05 50.3 19.5 7 31-37 26-32 (1179)
19 KOG0996 Structural maintenance 95.2 0.71 1.5E-05 54.4 16.7 55 226-280 537-591 (1293)
20 PF08317 Spc7: Spc7 kinetochor 95.2 1.3 2.7E-05 45.3 17.1 46 143-188 78-127 (325)
21 PRK11637 AmiB activator; Provi 95.1 1.7 3.8E-05 45.6 18.4 63 222-284 175-237 (428)
22 KOG0979 Structural maintenance 95.1 1.3 2.8E-05 51.6 18.5 30 170-200 197-226 (1072)
23 PF07888 CALCOCO1: Calcium bin 94.6 1.8 3.9E-05 47.8 17.1 17 99-115 79-95 (546)
24 KOG0250 DNA repair protein RAD 94.5 1.6 3.4E-05 51.3 17.2 76 222-297 377-453 (1074)
25 PHA02562 46 endonuclease subun 94.5 1.5 3.2E-05 46.9 16.0 24 181-204 186-209 (562)
26 PF11932 DUF3450: Protein of u 94.4 5.4 0.00012 39.1 20.0 54 300-355 166-234 (251)
27 PF04156 IncA: IncA protein; 94.4 3.9 8.5E-05 38.0 16.9 23 180-202 85-107 (191)
28 PF00261 Tropomyosin: Tropomyo 94.4 2.4 5.2E-05 41.4 16.0 80 222-301 125-204 (237)
29 COG4942 Membrane-bound metallo 94.3 1.3 2.9E-05 47.3 15.1 85 167-261 26-110 (420)
30 PF09789 DUF2353: Uncharacteri 94.2 4.1 8.8E-05 42.3 17.8 129 174-303 84-232 (319)
31 smart00787 Spc7 Spc7 kinetocho 94.1 4.6 0.0001 41.5 18.2 157 145-301 75-260 (312)
32 PF13851 GAS: Growth-arrest sp 94.1 5.8 0.00013 38.2 17.9 26 177-202 28-53 (201)
33 PRK09039 hypothetical protein; 94.1 3.1 6.8E-05 43.1 17.0 13 342-354 243-255 (343)
34 PRK02224 chromosome segregatio 94.0 2.3 5E-05 48.2 17.3 13 279-291 673-685 (880)
35 PRK02224 chromosome segregatio 94.0 1.5 3.3E-05 49.7 15.8 7 370-376 754-760 (880)
36 PF00261 Tropomyosin: Tropomyo 94.0 6.4 0.00014 38.4 18.2 84 217-300 127-210 (237)
37 PF07888 CALCOCO1: Calcium bin 94.0 2.8 6.1E-05 46.2 17.1 26 276-301 286-311 (546)
38 PRK04863 mukB cell division pr 94.0 2.3 4.9E-05 52.0 17.8 38 269-306 393-430 (1486)
39 COG4026 Uncharacterized protei 93.9 0.34 7.4E-06 48.1 9.1 72 216-287 141-212 (290)
40 PF10168 Nup88: Nuclear pore c 93.8 2.9 6.3E-05 47.5 17.4 169 165-356 529-708 (717)
41 TIGR02894 DNA_bind_RsfA transc 93.8 1.1 2.4E-05 42.2 11.9 18 176-193 54-71 (161)
42 KOG2391 Vacuolar sorting prote 93.8 2 4.3E-05 44.9 14.7 54 190-249 225-278 (365)
43 COG1196 Smc Chromosome segrega 93.8 3.7 8.1E-05 48.7 18.9 55 145-200 150-217 (1163)
44 TIGR01843 type_I_hlyD type I s 93.7 3 6.5E-05 42.4 15.9 21 280-300 246-266 (423)
45 PF09755 DUF2046: Uncharacteri 93.6 8 0.00017 40.0 18.5 13 338-350 180-192 (310)
46 KOG4360 Uncharacterized coiled 93.5 4.1 8.8E-05 44.8 16.9 123 188-313 193-315 (596)
47 PRK04778 septation ring format 93.4 3.8 8.2E-05 45.0 17.1 31 170-200 280-310 (569)
48 PF10146 zf-C4H2: Zinc finger- 93.4 4 8.7E-05 40.4 15.5 39 217-255 39-77 (230)
49 KOG0994 Extracellular matrix g 93.3 1.9 4E-05 51.2 14.7 45 269-313 1263-1307(1758)
50 TIGR01843 type_I_hlyD type I s 93.3 8.6 0.00019 39.1 18.4 22 179-200 84-105 (423)
51 PRK10884 SH3 domain-containing 93.0 1.6 3.5E-05 42.4 12.1 80 177-265 94-173 (206)
52 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.0 6.4 0.00014 35.2 17.5 43 257-299 89-131 (132)
53 KOG0995 Centromere-associated 92.8 6 0.00013 43.9 17.1 19 395-413 487-505 (581)
54 PF12718 Tropomyosin_1: Tropom 92.7 7.9 0.00017 35.5 15.7 65 229-300 78-142 (143)
55 TIGR01000 bacteriocin_acc bact 92.5 4.9 0.00011 42.6 15.9 27 178-204 174-200 (457)
56 PF05266 DUF724: Protein of un 92.5 8.7 0.00019 37.0 16.1 56 235-290 128-183 (190)
57 KOG0995 Centromere-associated 92.5 11 0.00024 41.9 18.6 29 177-205 260-288 (581)
58 PF08614 ATG16: Autophagy prot 92.5 0.95 2.1E-05 42.9 9.5 23 178-200 76-98 (194)
59 KOG0243 Kinesin-like protein [ 92.5 4 8.6E-05 48.1 16.0 72 217-288 483-554 (1041)
60 PRK04863 mukB cell division pr 92.4 3.5 7.5E-05 50.5 16.2 37 266-302 442-478 (1486)
61 PF08317 Spc7: Spc7 kinetochor 92.2 12 0.00025 38.4 17.6 29 175-203 148-176 (325)
62 KOG0964 Structural maintenance 92.1 5.4 0.00012 46.8 16.3 108 246-370 454-582 (1200)
63 PRK10884 SH3 domain-containing 92.1 3.7 8.1E-05 39.9 13.2 24 280-303 146-169 (206)
64 PF12325 TMF_TATA_bd: TATA ele 92.0 4.7 0.0001 36.2 12.8 31 175-205 15-45 (120)
65 PF06156 DUF972: Protein of un 91.9 0.67 1.4E-05 40.8 7.2 15 304-319 81-95 (107)
66 PF15619 Lebercilin: Ciliary p 91.9 9.7 0.00021 36.7 15.7 15 180-194 23-37 (194)
67 PF10481 CENP-F_N: Cenp-F N-te 91.9 8.5 0.00018 39.4 15.7 113 178-307 20-136 (307)
68 KOG0977 Nuclear envelope prote 91.8 11 0.00023 41.9 17.7 23 393-415 349-371 (546)
69 PF04012 PspA_IM30: PspA/IM30 91.7 13 0.00027 35.5 16.5 50 247-296 100-149 (221)
70 PF00038 Filament: Intermediat 91.7 15 0.00033 36.5 19.6 71 222-295 214-284 (312)
71 KOG0999 Microtubule-associated 91.7 7 0.00015 43.5 15.8 31 216-246 155-185 (772)
72 PRK04778 septation ring format 91.6 6.2 0.00013 43.4 15.8 50 240-289 378-427 (569)
73 TIGR03185 DNA_S_dndD DNA sulfu 91.6 6.1 0.00013 43.9 15.9 63 185-254 184-246 (650)
74 COG4985 ABC-type phosphate tra 91.6 5.4 0.00012 40.1 13.8 103 213-342 160-270 (289)
75 COG2433 Uncharacterized conser 91.4 4 8.8E-05 45.6 13.9 88 216-303 421-511 (652)
76 PF13851 GAS: Growth-arrest sp 91.2 14 0.00031 35.6 16.1 24 268-291 109-132 (201)
77 PF11559 ADIP: Afadin- and alp 91.1 11 0.00025 34.0 16.9 6 295-300 141-146 (151)
78 TIGR00606 rad50 rad50. This fa 90.9 5.9 0.00013 47.7 15.9 15 311-325 1149-1164(1311)
79 PRK01156 chromosome segregatio 90.9 9.7 0.00021 43.6 17.0 35 268-302 411-445 (895)
80 COG2433 Uncharacterized conser 90.8 4.5 9.7E-05 45.2 13.6 75 219-293 431-508 (652)
81 KOG0971 Microtubule-associated 90.8 41 0.00088 39.8 22.2 27 270-296 329-355 (1243)
82 KOG1962 B-cell receptor-associ 90.7 4.6 9.9E-05 39.8 12.2 13 226-238 160-172 (216)
83 PF12325 TMF_TATA_bd: TATA ele 90.3 13 0.00029 33.4 16.0 38 217-254 23-60 (120)
84 PF10473 CENP-F_leu_zip: Leuci 90.3 15 0.00032 34.0 16.3 36 222-257 64-99 (140)
85 TIGR00606 rad50 rad50. This fa 90.2 17 0.00036 43.9 18.9 39 212-250 824-862 (1311)
86 TIGR02680 conserved hypothetic 90.1 16 0.00034 44.5 18.6 10 150-159 180-189 (1353)
87 KOG0161 Myosin class II heavy 90.1 13 0.00028 46.8 17.9 35 223-257 1075-1109(1930)
88 KOG0804 Cytoplasmic Zn-finger 90.1 18 0.00039 39.4 16.8 8 66-73 182-189 (493)
89 PF06120 Phage_HK97_TLTM: Tail 90.0 13 0.00027 38.4 15.2 73 180-253 38-110 (301)
90 KOG0161 Myosin class II heavy 89.5 21 0.00046 45.0 19.0 12 70-81 658-671 (1930)
91 PRK09039 hypothetical protein; 89.3 15 0.00033 38.1 15.5 17 178-194 48-64 (343)
92 PF10146 zf-C4H2: Zinc finger- 89.3 24 0.00052 35.0 16.1 62 228-289 36-97 (230)
93 PF10498 IFT57: Intra-flagella 89.3 15 0.00032 38.7 15.5 77 166-258 217-293 (359)
94 PF10212 TTKRSYEDQ: Predicted 89.3 15 0.00032 40.6 15.8 78 222-302 439-516 (518)
95 PF15035 Rootletin: Ciliary ro 89.1 21 0.00046 34.1 15.7 82 175-256 15-113 (182)
96 PF05384 DegS: Sensor protein 89.1 20 0.00043 33.8 16.5 65 215-279 46-118 (159)
97 COG4372 Uncharacterized protei 89.1 36 0.00078 36.7 18.3 26 228-253 148-173 (499)
98 PF15285 BH3: Beclin-1 BH3 dom 89.0 0.17 3.6E-06 34.0 0.7 19 144-162 7-25 (25)
99 PF09755 DUF2046: Uncharacteri 89.0 20 0.00044 37.1 15.9 58 228-285 139-197 (310)
100 KOG4673 Transcription factor T 89.0 25 0.00055 40.2 17.5 51 154-206 389-439 (961)
101 KOG0999 Microtubule-associated 88.8 17 0.00038 40.5 15.9 67 218-284 108-188 (772)
102 TIGR01010 BexC_CtrB_KpsE polys 88.6 31 0.00068 35.3 18.7 126 174-300 168-305 (362)
103 PF09726 Macoilin: Transmembra 88.4 18 0.0004 41.1 16.5 26 232-257 546-571 (697)
104 PF00038 Filament: Intermediat 88.4 29 0.00062 34.6 17.9 35 266-300 103-137 (312)
105 PF15070 GOLGA2L5: Putative go 88.2 24 0.00051 39.8 17.0 23 337-359 199-221 (617)
106 PF09730 BicD: Microtubule-ass 88.0 32 0.0007 39.4 18.0 73 179-251 37-117 (717)
107 TIGR03185 DNA_S_dndD DNA sulfu 88.0 39 0.00084 37.7 18.6 41 217-257 428-468 (650)
108 KOG2264 Exostosin EXT1L [Signa 87.9 4.3 9.3E-05 45.3 10.7 70 229-312 91-160 (907)
109 PF06005 DUF904: Protein of un 87.8 14 0.00031 30.4 11.6 43 220-262 7-49 (72)
110 PF09789 DUF2353: Uncharacteri 87.5 39 0.00086 35.2 17.8 167 180-355 13-222 (319)
111 TIGR03752 conj_TIGR03752 integ 87.5 7.9 0.00017 42.2 12.3 76 225-300 67-143 (472)
112 KOG1962 B-cell receptor-associ 87.4 9.7 0.00021 37.6 11.9 38 222-259 149-186 (216)
113 KOG0964 Structural maintenance 87.3 50 0.0011 39.3 18.9 62 224-285 411-472 (1200)
114 PF10168 Nup88: Nuclear pore c 87.0 57 0.0012 37.4 19.3 22 279-300 638-659 (717)
115 COG5185 HEC1 Protein involved 86.9 33 0.00072 37.8 16.4 26 335-360 391-416 (622)
116 PF09726 Macoilin: Transmembra 86.8 40 0.00087 38.5 17.9 28 177-204 419-446 (697)
117 PRK11519 tyrosine kinase; Prov 86.6 63 0.0014 36.6 22.2 35 267-301 364-398 (719)
118 PF06160 EzrA: Septation ring 86.6 25 0.00054 38.8 15.9 180 170-354 276-486 (560)
119 KOG0933 Structural maintenance 86.6 33 0.00072 40.7 17.2 17 72-88 571-587 (1174)
120 KOG0804 Cytoplasmic Zn-finger 86.6 26 0.00057 38.2 15.4 15 283-297 431-445 (493)
121 COG4942 Membrane-bound metallo 86.5 14 0.0003 39.8 13.4 8 294-301 119-126 (420)
122 PF00769 ERM: Ezrin/radixin/mo 86.4 26 0.00056 34.8 14.5 32 228-259 65-96 (246)
123 PF12718 Tropomyosin_1: Tropom 86.4 26 0.00057 32.1 17.1 32 221-252 32-63 (143)
124 PF07106 TBPIP: Tat binding pr 86.3 11 0.00024 34.8 11.2 69 170-238 66-137 (169)
125 TIGR01069 mutS2 MutS2 family p 86.3 11 0.00023 43.4 13.2 12 21-32 295-306 (771)
126 PRK00409 recombination and DNA 86.3 14 0.00031 42.3 14.3 13 20-32 299-311 (782)
127 PF10186 Atg14: UV radiation r 86.2 34 0.00074 33.2 18.4 140 218-361 71-224 (302)
128 KOG0288 WD40 repeat protein Ti 86.0 27 0.00058 37.8 15.0 107 180-286 10-117 (459)
129 KOG0982 Centrosomal protein Nu 85.9 32 0.00069 37.4 15.5 29 274-302 361-389 (502)
130 TIGR03007 pepcterm_ChnLen poly 85.6 54 0.0012 34.9 21.7 36 267-302 349-384 (498)
131 PRK09841 cryptic autophosphory 85.5 71 0.0015 36.3 23.0 127 172-302 263-399 (726)
132 KOG0977 Nuclear envelope prote 85.5 36 0.00078 37.9 16.3 20 181-200 111-130 (546)
133 cd07666 BAR_SNX7 The Bin/Amphi 85.3 43 0.00093 33.5 16.9 58 145-202 87-151 (243)
134 KOG1853 LIS1-interacting prote 85.3 43 0.00093 34.3 15.3 78 226-306 54-134 (333)
135 PF09730 BicD: Microtubule-ass 85.3 37 0.00081 39.0 16.7 24 267-290 122-145 (717)
136 PF04849 HAP1_N: HAP1 N-termin 85.2 41 0.00088 35.0 15.6 87 213-299 163-267 (306)
137 TIGR02894 DNA_bind_RsfA transc 85.0 16 0.00036 34.6 11.7 31 227-257 100-130 (161)
138 PF05701 WEMBL: Weak chloropla 85.0 55 0.0012 35.8 17.5 7 336-342 421-427 (522)
139 KOG2072 Translation initiation 84.9 33 0.00071 40.0 15.8 150 152-301 521-698 (988)
140 PF00769 ERM: Ezrin/radixin/mo 84.6 45 0.00098 33.1 16.7 75 223-297 46-120 (246)
141 KOG4438 Centromere-associated 84.5 41 0.00089 36.5 15.6 147 178-354 137-286 (446)
142 TIGR01069 mutS2 MutS2 family p 84.4 15 0.00033 42.1 13.3 53 381-441 694-750 (771)
143 PF05700 BCAS2: Breast carcino 84.2 9.3 0.0002 37.1 10.1 43 216-258 174-216 (221)
144 PF12329 TMF_DNA_bd: TATA elem 83.9 18 0.00039 29.7 10.2 29 227-255 15-43 (74)
145 PF15619 Lebercilin: Ciliary p 83.4 45 0.00097 32.2 17.7 32 269-300 153-184 (194)
146 PF11932 DUF3450: Protein of u 83.4 45 0.00099 32.7 14.6 9 355-363 163-172 (251)
147 TIGR03752 conj_TIGR03752 integ 83.4 13 0.00028 40.6 11.6 75 226-300 61-136 (472)
148 PF05266 DUF724: Protein of un 83.4 45 0.00097 32.2 15.7 108 186-293 65-179 (190)
149 KOG4674 Uncharacterized conser 83.3 56 0.0012 41.2 17.9 27 178-204 131-157 (1822)
150 PRK08032 fliD flagellar cappin 83.3 4.8 0.0001 43.2 8.4 51 235-288 410-460 (462)
151 PF11180 DUF2968: Protein of u 83.3 40 0.00086 32.9 13.7 75 222-303 110-184 (192)
152 TIGR02231 conserved hypothetic 83.3 22 0.00048 38.5 13.5 36 266-301 138-173 (525)
153 PF02403 Seryl_tRNA_N: Seryl-t 83.2 22 0.00047 30.3 10.9 40 214-253 26-65 (108)
154 TIGR02231 conserved hypothetic 83.1 16 0.00034 39.6 12.3 26 264-289 143-168 (525)
155 KOG0980 Actin-binding protein 83.1 1.1E+02 0.0023 36.3 24.7 81 222-302 436-516 (980)
156 TIGR02680 conserved hypothetic 83.1 46 0.001 40.6 17.3 14 180-193 234-247 (1353)
157 PF10267 Tmemb_cc2: Predicted 83.0 29 0.00064 37.1 13.9 31 175-205 211-241 (395)
158 PRK13169 DNA replication intia 82.8 4.8 0.0001 35.8 6.8 15 304-319 78-92 (110)
159 KOG3647 Predicted coiled-coil 82.7 56 0.0012 33.7 15.0 34 143-176 53-86 (338)
160 PF14662 CCDC155: Coiled-coil 82.7 50 0.0011 32.3 18.7 39 219-257 76-114 (193)
161 PF05667 DUF812: Protein of un 82.6 67 0.0015 36.1 17.1 61 242-302 423-483 (594)
162 PF05278 PEARLI-4: Arabidopsis 82.5 23 0.00049 36.2 12.3 151 144-301 94-263 (269)
163 PF06160 EzrA: Septation ring 82.3 69 0.0015 35.4 16.9 38 264-301 384-421 (560)
164 PF14662 CCDC155: Coiled-coil 82.1 53 0.0011 32.1 17.3 44 215-258 86-129 (193)
165 KOG1899 LAR transmembrane tyro 82.1 19 0.00042 40.7 12.5 13 365-377 329-341 (861)
166 PF12128 DUF3584: Protein of u 82.1 71 0.0015 38.5 18.1 21 229-249 683-703 (1201)
167 TIGR01000 bacteriocin_acc bact 82.0 75 0.0016 33.8 17.7 23 180-202 101-123 (457)
168 KOG0612 Rho-associated, coiled 81.8 43 0.00093 40.5 15.7 12 189-200 514-525 (1317)
169 KOG1029 Endocytic adaptor prot 81.7 18 0.00039 41.9 12.2 9 365-373 698-706 (1118)
170 PF05701 WEMBL: Weak chloropla 81.6 84 0.0018 34.5 17.2 35 266-300 407-441 (522)
171 TIGR03319 YmdA_YtgF conserved 81.4 41 0.00088 37.0 14.7 16 395-410 306-321 (514)
172 PRK00409 recombination and DNA 81.2 31 0.00068 39.7 14.3 18 142-159 388-405 (782)
173 PRK06798 fliD flagellar cappin 81.2 6.3 0.00014 42.3 8.3 54 232-288 380-433 (440)
174 PF11559 ADIP: Afadin- and alp 80.8 43 0.00093 30.2 13.6 27 222-248 78-104 (151)
175 PF08647 BRE1: BRE1 E3 ubiquit 80.7 35 0.00076 29.1 11.5 64 183-252 3-66 (96)
176 COG4026 Uncharacterized protei 80.4 47 0.001 33.5 13.3 11 151-161 74-84 (290)
177 KOG4673 Transcription factor T 80.4 68 0.0015 37.0 15.9 22 331-352 656-683 (961)
178 COG1382 GimC Prefoldin, chaper 80.4 36 0.00077 30.9 11.5 26 178-203 15-40 (119)
179 KOG4643 Uncharacterized coiled 80.3 1.3E+02 0.0029 36.1 18.6 7 294-300 551-557 (1195)
180 PF06005 DUF904: Protein of un 80.2 32 0.00069 28.4 11.4 31 228-258 22-52 (72)
181 PF05667 DUF812: Protein of un 80.2 52 0.0011 37.0 15.2 26 178-203 330-355 (594)
182 PRK11519 tyrosine kinase; Prov 80.0 29 0.00063 39.3 13.4 31 174-204 265-295 (719)
183 TIGR03007 pepcterm_ChnLen poly 79.9 67 0.0015 34.2 15.5 28 176-203 161-188 (498)
184 PF15254 CCDC14: Coiled-coil d 79.8 59 0.0013 37.8 15.4 77 222-301 467-543 (861)
185 KOG0980 Actin-binding protein 79.7 1.1E+02 0.0024 36.2 17.6 10 320-329 563-572 (980)
186 COG5185 HEC1 Protein involved 79.7 1.1E+02 0.0023 34.1 17.8 21 394-414 527-547 (622)
187 PF10234 Cluap1: Clusterin-ass 79.6 47 0.001 33.8 13.4 35 217-251 183-217 (267)
188 KOG0239 Kinesin (KAR3 subfamil 79.5 73 0.0016 36.4 16.2 62 222-283 232-293 (670)
189 PF03961 DUF342: Protein of un 79.5 17 0.00037 38.7 10.9 87 162-248 320-406 (451)
190 KOG0976 Rho/Rac1-interacting s 79.4 66 0.0014 37.8 15.5 19 224-242 141-159 (1265)
191 KOG0979 Structural maintenance 79.3 53 0.0011 39.1 15.1 23 182-204 201-223 (1072)
192 PF15066 CAGE1: Cancer-associa 79.2 98 0.0021 34.1 16.2 38 258-295 488-525 (527)
193 KOG0996 Structural maintenance 79.2 88 0.0019 38.0 17.0 19 318-336 613-633 (1293)
194 PRK09841 cryptic autophosphory 79.0 32 0.00068 39.0 13.3 24 226-249 306-329 (726)
195 PRK11281 hypothetical protein; 78.8 59 0.0013 39.2 15.8 27 178-204 82-108 (1113)
196 PF10473 CENP-F_leu_zip: Leuci 78.1 58 0.0013 30.2 17.8 31 220-250 55-85 (140)
197 PRK12704 phosphodiesterase; Pr 78.0 1.2E+02 0.0025 33.6 18.6 10 235-244 104-113 (520)
198 PF11414 Suppressor_APC: Adeno 78.0 36 0.00079 28.9 10.2 54 216-269 6-61 (84)
199 PF08172 CASP_C: CASP C termin 77.5 11 0.00025 37.6 8.3 37 268-304 88-124 (248)
200 PF10211 Ax_dynein_light: Axon 77.5 68 0.0015 30.7 14.6 67 226-298 122-188 (189)
201 cd00632 Prefoldin_beta Prefold 77.3 41 0.00089 28.8 10.7 33 222-254 68-100 (105)
202 PRK10361 DNA recombination pro 77.2 1.2E+02 0.0026 33.4 18.4 29 222-250 90-118 (475)
203 TIGR02338 gimC_beta prefoldin, 77.2 39 0.00085 29.2 10.6 32 222-253 72-103 (110)
204 PF03962 Mnd1: Mnd1 family; I 76.7 42 0.00091 32.1 11.6 26 225-250 104-129 (188)
205 PF01920 Prefoldin_2: Prefoldi 76.6 25 0.00054 29.2 9.0 35 220-254 65-99 (106)
206 COG1345 FliD Flagellar capping 76.0 9.7 0.00021 41.6 7.9 49 237-288 428-476 (483)
207 TIGR03319 YmdA_YtgF conserved 75.9 1E+02 0.0022 34.0 15.6 35 229-263 92-126 (514)
208 PF15070 GOLGA2L5: Putative go 75.8 1E+02 0.0022 34.9 15.9 23 392-414 337-359 (617)
209 PF03961 DUF342: Protein of un 75.7 16 0.00035 38.8 9.4 75 224-299 334-408 (451)
210 KOG4360 Uncharacterized coiled 75.7 93 0.002 34.7 14.9 70 216-285 232-301 (596)
211 KOG0612 Rho-associated, coiled 75.4 34 0.00073 41.4 12.4 26 394-419 668-693 (1317)
212 PF03962 Mnd1: Mnd1 family; I 75.4 33 0.00071 32.8 10.5 31 221-251 66-96 (188)
213 TIGR01005 eps_transp_fam exopo 74.9 1.5E+02 0.0033 33.5 22.9 31 270-300 373-403 (754)
214 PF10211 Ax_dynein_light: Axon 74.8 81 0.0018 30.2 18.2 55 220-274 123-178 (189)
215 COG1730 GIM5 Predicted prefold 74.6 71 0.0015 29.8 12.1 84 176-259 20-136 (145)
216 TIGR00634 recN DNA repair prot 74.6 1.4E+02 0.003 32.9 16.3 77 232-313 323-402 (563)
217 KOG4674 Uncharacterized conser 74.6 99 0.0021 39.2 16.3 21 180-200 63-83 (1822)
218 TIGR00998 8a0101 efflux pump m 74.6 45 0.00098 33.2 11.7 20 181-200 78-97 (334)
219 KOG4460 Nuclear pore complex, 74.4 1.6E+02 0.0034 33.4 17.9 18 166-183 553-570 (741)
220 TIGR01005 eps_transp_fam exopo 74.3 1.1E+02 0.0024 34.6 15.9 34 327-360 420-459 (754)
221 PRK07737 fliD flagellar cappin 74.2 13 0.00029 40.4 8.4 51 235-288 445-495 (501)
222 TIGR00570 cdk7 CDK-activating 74.2 1.2E+02 0.0025 31.7 16.2 14 165-178 26-39 (309)
223 KOG0971 Microtubule-associated 74.0 2E+02 0.0044 34.4 18.1 18 50-67 103-120 (1243)
224 PF10174 Cast: RIM-binding pro 73.9 1.8E+02 0.004 33.9 17.7 8 229-236 341-348 (775)
225 PF05911 DUF869: Plant protein 73.7 1.3E+02 0.0029 34.9 16.4 31 267-297 135-165 (769)
226 KOG4572 Predicted DNA-binding 73.6 1.1E+02 0.0025 36.0 15.5 57 257-313 993-1049(1424)
227 PF04899 MbeD_MobD: MbeD/MobD 73.3 46 0.001 27.4 9.4 36 266-301 28-63 (70)
228 COG4477 EzrA Negative regulato 73.0 1E+02 0.0022 34.5 14.5 105 242-355 379-490 (570)
229 PRK06664 fliD flagellar hook-a 72.8 12 0.00025 42.4 7.8 54 232-288 601-654 (661)
230 KOG2129 Uncharacterized conser 72.7 38 0.00083 36.8 11.0 88 179-271 249-336 (552)
231 PRK11578 macrolide transporter 72.7 68 0.0015 32.9 12.8 22 279-300 157-178 (370)
232 PF06637 PV-1: PV-1 protein (P 72.5 1.5E+02 0.0031 32.2 15.0 37 263-299 353-389 (442)
233 PF07303 Occludin_ELL: Occludi 72.3 28 0.0006 30.3 8.4 72 225-301 23-94 (101)
234 PF12777 MT: Microtubule-bindi 72.3 14 0.00031 38.0 7.8 21 341-363 310-332 (344)
235 PF05529 Bap31: B-cell recepto 72.2 25 0.00054 33.0 8.8 34 224-257 154-187 (192)
236 KOG0994 Extracellular matrix g 71.9 2.3E+02 0.0049 35.0 17.6 13 147-159 1522-1534(1758)
237 PF09738 DUF2051: Double stran 71.9 99 0.0022 32.0 13.6 36 213-248 101-136 (302)
238 PF14197 Cep57_CLD_2: Centroso 71.8 54 0.0012 26.8 9.9 34 267-300 34-67 (69)
239 KOG4403 Cell surface glycoprot 71.8 1.4E+02 0.0029 32.9 14.8 46 271-316 345-391 (575)
240 COG3879 Uncharacterized protei 71.8 58 0.0013 32.9 11.5 18 311-329 169-186 (247)
241 KOG1029 Endocytic adaptor prot 71.5 1.4E+02 0.003 35.1 15.5 11 102-112 125-135 (1118)
242 PF08826 DMPK_coil: DMPK coile 71.5 28 0.0006 28.0 7.5 41 216-256 17-57 (61)
243 PF05911 DUF869: Plant protein 71.4 2.1E+02 0.0045 33.4 18.1 32 222-253 132-163 (769)
244 TIGR02473 flagell_FliJ flagell 71.4 69 0.0015 27.9 14.4 90 179-271 30-122 (141)
245 PF07106 TBPIP: Tat binding pr 71.2 86 0.0019 28.9 12.6 30 222-251 77-106 (169)
246 PF10481 CENP-F_N: Cenp-F N-te 71.0 74 0.0016 32.9 12.1 31 271-301 86-116 (307)
247 KOG0240 Kinesin (SMY1 subfamil 70.9 1.9E+02 0.0041 32.7 18.5 65 223-287 413-484 (607)
248 PF09728 Taxilin: Myosin-like 70.8 1.3E+02 0.0029 30.9 16.1 24 278-301 140-163 (309)
249 PF12761 End3: Actin cytoskele 70.4 80 0.0017 30.9 11.8 22 275-296 162-183 (195)
250 PRK09343 prefoldin subunit bet 70.3 67 0.0015 28.5 10.6 31 222-252 76-106 (121)
251 PF09744 Jnk-SapK_ap_N: JNK_SA 70.2 98 0.0021 29.1 13.7 54 221-274 86-139 (158)
252 PF10037 MRP-S27: Mitochondria 70.1 1.6E+02 0.0034 32.0 15.2 31 243-273 370-400 (429)
253 PF10234 Cluap1: Clusterin-ass 70.0 1.3E+02 0.0029 30.6 14.6 27 222-248 174-200 (267)
254 PF07061 Swi5: Swi5; InterPro 69.8 19 0.00041 30.4 6.6 11 263-273 43-53 (83)
255 KOG0976 Rho/Rac1-interacting s 69.7 1.9E+02 0.0041 34.3 16.0 48 149-197 228-280 (1265)
256 COG4477 EzrA Negative regulato 69.7 1.9E+02 0.0042 32.5 15.7 24 175-198 284-307 (570)
257 PF10224 DUF2205: Predicted co 69.6 37 0.00079 28.7 8.2 42 226-268 18-59 (80)
258 PF05557 MAD: Mitotic checkpoi 69.5 7.3 0.00016 43.9 5.4 124 175-298 398-535 (722)
259 KOG4302 Microtubule-associated 69.4 38 0.00083 38.5 10.7 42 222-263 101-142 (660)
260 KOG3758 Uncharacterized conser 69.4 1.4E+02 0.003 34.0 14.8 140 153-309 16-160 (655)
261 PF14197 Cep57_CLD_2: Centroso 69.3 62 0.0013 26.5 10.4 57 235-291 9-65 (69)
262 cd00890 Prefoldin Prefoldin is 68.6 67 0.0015 27.6 10.1 34 221-254 91-124 (129)
263 PF05529 Bap31: B-cell recepto 68.6 38 0.00083 31.8 9.2 24 269-292 164-187 (192)
264 PF14257 DUF4349: Domain of un 68.5 34 0.00073 33.6 9.2 48 152-200 107-156 (262)
265 PRK08724 fliD flagellar cappin 68.3 25 0.00055 40.0 9.1 51 234-287 620-670 (673)
266 PF15188 CCDC-167: Coiled-coil 68.1 20 0.00043 30.7 6.4 24 280-303 43-66 (85)
267 KOG0982 Centrosomal protein Nu 67.9 1.9E+02 0.0042 31.7 15.1 10 294-303 410-419 (502)
268 PF05276 SH3BP5: SH3 domain-bi 67.9 1.4E+02 0.003 30.0 14.2 39 262-300 180-218 (239)
269 PRK13182 racA polar chromosome 67.8 50 0.0011 31.4 9.8 67 231-306 85-151 (175)
270 KOG0972 Huntingtin interacting 67.7 1.3E+02 0.0028 31.6 13.2 43 215-257 257-299 (384)
271 PF06248 Zw10: Centromere/kine 67.6 1.3E+02 0.0027 33.3 14.2 33 171-203 9-46 (593)
272 PF12777 MT: Microtubule-bindi 67.6 90 0.002 32.2 12.4 26 277-302 79-104 (344)
273 PRK03947 prefoldin subunit alp 67.5 92 0.002 27.8 12.8 21 183-203 6-26 (140)
274 PRK10929 putative mechanosensi 67.4 2.7E+02 0.0059 33.8 17.6 18 332-349 260-277 (1109)
275 PF07111 HCR: Alpha helical co 67.2 2.5E+02 0.0053 32.6 18.8 36 265-300 241-276 (739)
276 PRK13729 conjugal transfer pil 67.0 18 0.0004 39.5 7.5 11 366-376 213-223 (475)
277 KOG0993 Rab5 GTPase effector R 66.9 1.1E+02 0.0024 33.4 12.9 47 212-258 136-182 (542)
278 KOG3800 Predicted E3 ubiquitin 66.9 22 0.00049 36.6 7.6 15 164-178 22-36 (300)
279 PF13514 AAA_27: AAA domain 66.8 2.6E+02 0.0056 33.4 17.4 23 331-353 1019-1041(1111)
280 COG3206 GumC Uncharacterized p 66.8 1.7E+02 0.0036 31.2 14.6 113 177-295 286-402 (458)
281 KOG3119 Basic region leucine z 66.7 32 0.0007 34.6 8.7 56 215-270 206-261 (269)
282 PF14817 HAUS5: HAUS augmin-li 66.5 1.4E+02 0.003 34.0 14.4 47 228-274 83-129 (632)
283 PLN02372 violaxanthin de-epoxi 66.5 78 0.0017 34.4 11.8 24 249-272 407-430 (455)
284 PF02388 FemAB: FemAB family; 66.3 18 0.00039 38.1 7.2 41 275-315 275-315 (406)
285 PLN02678 seryl-tRNA synthetase 66.3 65 0.0014 35.0 11.4 72 215-290 31-102 (448)
286 PRK06800 fliH flagellar assemb 66.1 86 0.0019 30.8 11.0 7 267-273 106-112 (228)
287 KOG0978 E3 ubiquitin ligase in 66.0 2.6E+02 0.0056 32.4 17.7 48 255-302 569-616 (698)
288 KOG4643 Uncharacterized coiled 66.0 3.1E+02 0.0066 33.3 18.3 13 404-416 699-711 (1195)
289 KOG1899 LAR transmembrane tyro 65.9 81 0.0018 36.0 12.1 101 153-258 85-194 (861)
290 KOG0243 Kinesin-like protein [ 65.7 2.7E+02 0.006 33.6 16.8 28 224-251 483-510 (1041)
291 COG0419 SbcC ATPase involved i 65.5 2.7E+02 0.0059 32.5 18.1 29 172-200 167-195 (908)
292 COG1842 PspA Phage shock prote 65.5 1.5E+02 0.0032 29.4 17.3 39 151-191 3-46 (225)
293 PF07926 TPR_MLP1_2: TPR/MLP1/ 65.4 1E+02 0.0022 27.5 16.4 71 218-291 60-130 (132)
294 KOG4001 Axonemal dynein light 65.2 1.4E+02 0.003 29.9 12.3 33 222-254 183-215 (259)
295 KOG2077 JNK/SAPK-associated pr 65.1 2.5E+02 0.0055 32.0 18.7 108 174-283 294-423 (832)
296 cd00584 Prefoldin_alpha Prefol 65.0 96 0.0021 27.1 10.5 83 175-257 12-127 (129)
297 TIGR02449 conserved hypothetic 64.7 60 0.0013 26.5 8.2 32 221-252 4-35 (65)
298 PF14712 Snapin_Pallidin: Snap 64.6 80 0.0017 26.1 13.1 76 224-300 14-91 (92)
299 TIGR02977 phageshock_pspA phag 64.1 1.4E+02 0.0031 28.8 16.2 25 173-197 28-52 (219)
300 cd07593 BAR_MUG137_fungi The B 64.0 1.5E+02 0.0032 29.1 12.5 16 285-300 187-202 (215)
301 KOG2391 Vacuolar sorting prote 63.6 68 0.0015 34.0 10.4 19 126-144 185-203 (365)
302 KOG1103 Predicted coiled-coil 63.4 87 0.0019 33.6 11.3 28 145-172 57-85 (561)
303 PF13514 AAA_27: AAA domain 63.2 3.3E+02 0.0071 32.6 18.0 27 178-204 745-771 (1111)
304 COG1340 Uncharacterized archae 63.0 2E+02 0.0042 30.0 19.5 19 224-242 131-149 (294)
305 KOG0163 Myosin class VI heavy 62.9 2.4E+02 0.0051 33.4 15.1 10 194-203 904-913 (1259)
306 PF10805 DUF2730: Protein of u 62.9 75 0.0016 27.6 9.2 32 268-299 67-98 (106)
307 cd07674 F-BAR_FCHO1 The F-BAR 62.6 1.7E+02 0.0036 29.1 17.2 18 320-337 244-261 (261)
308 PF02050 FliJ: Flagellar FliJ 62.5 85 0.0019 25.7 14.2 87 178-268 14-103 (123)
309 PRK05431 seryl-tRNA synthetase 62.4 66 0.0014 34.4 10.5 37 216-252 27-63 (425)
310 KOG0018 Structural maintenance 62.0 3.6E+02 0.0078 32.8 16.9 30 396-425 647-676 (1141)
311 TIGR03017 EpsF chain length de 62.0 2.1E+02 0.0045 29.9 15.3 32 174-205 169-200 (444)
312 KOG4796 RNA polymerase II elon 61.9 21 0.00045 39.7 6.7 55 227-282 518-573 (604)
313 PF14932 HAUS-augmin3: HAUS au 61.9 83 0.0018 31.3 10.5 13 417-429 239-251 (256)
314 PF10779 XhlA: Haemolysin XhlA 61.8 83 0.0018 25.3 8.7 47 215-261 4-50 (71)
315 PF09787 Golgin_A5: Golgin sub 61.6 2.5E+02 0.0054 30.7 17.5 34 382-415 455-490 (511)
316 cd07596 BAR_SNX The Bin/Amphip 61.5 1.3E+02 0.0029 27.5 18.6 15 147-161 39-53 (218)
317 PF13166 AAA_13: AAA domain 61.4 2.7E+02 0.0058 31.0 18.1 24 326-354 494-517 (712)
318 smart00787 Spc7 Spc7 kinetocho 61.3 2.1E+02 0.0045 29.7 18.1 12 182-193 83-94 (312)
319 KOG3091 Nuclear pore complex, 61.3 1.1E+02 0.0023 34.0 11.8 15 99-113 182-196 (508)
320 COG1340 Uncharacterized archae 61.1 2.1E+02 0.0046 29.7 16.7 74 221-294 169-242 (294)
321 KOG4302 Microtubule-associated 61.0 2.7E+02 0.0058 32.0 15.3 17 404-420 297-313 (660)
322 KOG4603 TBP-1 interacting prot 60.9 1.7E+02 0.0037 28.5 11.8 31 221-251 83-113 (201)
323 PF15294 Leu_zip: Leucine zipp 60.9 2.1E+02 0.0045 29.5 13.5 78 215-292 130-227 (278)
324 KOG4460 Nuclear pore complex, 60.6 3E+02 0.0065 31.3 15.9 29 270-298 659-687 (741)
325 PF05010 TACC: Transforming ac 60.6 1.8E+02 0.0038 28.7 16.6 35 264-298 159-193 (207)
326 PF02996 Prefoldin: Prefoldin 60.6 52 0.0011 28.1 7.8 26 178-203 5-30 (120)
327 PF03980 Nnf1: Nnf1 ; InterPr 60.6 1.1E+02 0.0024 26.2 10.9 77 176-252 14-108 (109)
328 PF09763 Sec3_C: Exocyst compl 60.4 1.8E+02 0.0038 32.9 14.0 111 174-304 3-113 (701)
329 COG3074 Uncharacterized protei 60.4 1E+02 0.0022 25.9 10.5 32 236-268 37-68 (79)
330 KOG1003 Actin filament-coating 60.4 1.8E+02 0.0039 28.7 16.8 64 238-301 109-172 (205)
331 PF02841 GBP_C: Guanylate-bind 60.3 1.9E+02 0.0042 29.1 13.9 31 171-201 150-184 (297)
332 PF14817 HAUS5: HAUS augmin-li 60.3 1.3E+02 0.0027 34.4 12.6 40 218-257 80-119 (632)
333 PF15397 DUF4618: Domain of un 60.2 2E+02 0.0044 29.3 16.8 38 220-257 70-107 (258)
334 TIGR00634 recN DNA repair prot 60.0 2.5E+02 0.0054 30.9 14.7 15 392-406 443-457 (563)
335 PF12761 End3: Actin cytoskele 59.7 82 0.0018 30.8 9.7 33 268-300 162-194 (195)
336 KOG4571 Activating transcripti 59.6 35 0.00076 35.2 7.5 40 223-262 247-286 (294)
337 KOG4787 Uncharacterized conser 59.4 88 0.0019 35.6 10.9 74 178-252 461-543 (852)
338 PF02994 Transposase_22: L1 tr 59.3 29 0.00063 36.5 7.1 12 320-331 190-201 (370)
339 PF03148 Tektin: Tektin family 59.2 2.4E+02 0.0052 29.8 16.6 28 274-301 325-352 (384)
340 PRK10636 putative ABC transpor 59.0 60 0.0013 36.2 9.9 23 231-253 563-585 (638)
341 KOG0288 WD40 repeat protein Ti 58.9 2.3E+02 0.005 31.0 13.6 12 345-356 208-219 (459)
342 TIGR03017 EpsF chain length de 58.9 2.3E+02 0.0051 29.5 21.9 27 273-299 342-368 (444)
343 KOG4593 Mitotic checkpoint pro 58.9 3.4E+02 0.0074 31.4 15.6 113 178-297 421-534 (716)
344 KOG1103 Predicted coiled-coil 58.8 1.8E+02 0.0039 31.3 12.6 15 391-405 460-474 (561)
345 PRK10636 putative ABC transpor 58.7 62 0.0013 36.1 9.9 25 217-241 563-587 (638)
346 COG4717 Uncharacterized conser 58.6 3.5E+02 0.0075 32.3 15.7 56 266-321 818-879 (984)
347 PF09403 FadA: Adhesion protei 58.4 1.5E+02 0.0032 27.1 11.8 18 229-246 57-74 (126)
348 smart00502 BBC B-Box C-termina 58.2 1.1E+02 0.0024 25.5 11.2 23 181-203 5-27 (127)
349 KOG3478 Prefoldin subunit 6, K 58.0 1.5E+02 0.0032 26.9 11.1 28 178-205 7-34 (120)
350 PRK00888 ftsB cell division pr 57.6 35 0.00076 29.8 6.3 31 221-251 31-61 (105)
351 TIGR01730 RND_mfp RND family e 57.6 70 0.0015 31.1 9.1 17 284-300 113-129 (322)
352 PRK10246 exonuclease subunit S 57.5 3.7E+02 0.008 32.1 16.4 25 176-200 184-208 (1047)
353 PRK10929 putative mechanosensi 57.4 4.4E+02 0.0094 32.2 17.7 42 268-309 281-322 (1109)
354 PF05130 FlgN: FlgN protein; 56.9 1.2E+02 0.0026 25.7 11.6 61 187-249 9-69 (143)
355 TIGR00414 serS seryl-tRNA synt 56.7 1.1E+02 0.0024 32.6 11.0 36 216-251 29-64 (418)
356 KOG2196 Nuclear porin [Nuclear 56.5 2.3E+02 0.0051 28.8 15.2 38 216-253 119-156 (254)
357 KOG4005 Transcription factor X 56.3 1.1E+02 0.0025 31.0 10.2 27 256-282 115-141 (292)
358 KOG0962 DNA repair protein RAD 56.2 4.8E+02 0.01 32.4 16.9 24 394-417 1079-1102(1294)
359 KOG1937 Uncharacterized conser 56.2 3.2E+02 0.0069 30.3 16.7 22 230-251 344-365 (521)
360 KOG0946 ER-Golgi vesicle-tethe 55.9 85 0.0018 36.8 10.3 71 229-299 648-718 (970)
361 PRK05771 V-type ATP synthase s 55.8 48 0.001 37.0 8.5 16 188-203 48-63 (646)
362 PF07352 Phage_Mu_Gam: Bacteri 55.8 1.6E+02 0.0035 26.8 10.7 28 291-327 58-85 (149)
363 PF10267 Tmemb_cc2: Predicted 55.7 2.9E+02 0.0064 29.7 14.4 21 338-358 344-364 (395)
364 TIGR03794 NHPM_micro_HlyD NHPM 55.7 2.7E+02 0.0058 29.2 17.9 47 280-327 227-273 (421)
365 PF01496 V_ATPase_I: V-type AT 55.7 8.4 0.00018 43.7 2.7 25 288-312 154-178 (759)
366 PF09798 LCD1: DNA damage chec 55.4 66 0.0014 36.7 9.4 60 229-294 2-61 (654)
367 PRK00106 hypothetical protein; 55.3 3.4E+02 0.0074 30.3 18.6 15 228-242 105-119 (535)
368 PLN03188 kinesin-12 family pro 55.2 4.5E+02 0.0097 32.6 16.4 31 243-277 1160-1191(1320)
369 PF14257 DUF4349: Domain of un 55.1 2.2E+02 0.0047 28.0 13.2 62 276-346 165-226 (262)
370 PF14723 SSFA2_C: Sperm-specif 55.0 1.7E+02 0.0037 28.3 10.7 20 184-203 106-125 (179)
371 PRK10869 recombination and rep 55.0 3.3E+02 0.0072 30.2 14.6 7 395-401 436-442 (553)
372 KOG0946 ER-Golgi vesicle-tethe 54.7 2.4E+02 0.0052 33.4 13.5 55 222-276 662-716 (970)
373 KOG0962 DNA repair protein RAD 54.3 3.8E+02 0.0082 33.2 15.7 23 296-318 947-969 (1294)
374 PF07195 FliD_C: Flagellar hoo 54.2 45 0.00097 32.5 7.1 46 229-277 191-236 (239)
375 PF15372 DUF4600: Domain of un 54.2 1.8E+02 0.0039 26.8 12.3 39 227-268 54-92 (129)
376 PF04977 DivIC: Septum formati 53.9 45 0.00097 26.3 5.9 29 222-250 22-50 (80)
377 PF15290 Syntaphilin: Golgi-lo 53.5 2.6E+02 0.0057 29.1 12.4 87 210-296 54-140 (305)
378 PRK11281 hypothetical protein; 53.2 92 0.002 37.6 10.6 9 337-345 285-293 (1113)
379 PF05377 FlaC_arch: Flagella a 53.1 61 0.0013 25.8 6.3 34 221-254 4-37 (55)
380 PF09738 DUF2051: Double stran 52.8 1.7E+02 0.0038 30.3 11.3 32 222-253 103-134 (302)
381 PRK03947 prefoldin subunit alp 52.7 1.7E+02 0.0037 26.0 13.6 26 273-298 108-133 (140)
382 KOG3564 GTPase-activating prot 52.6 1.2E+02 0.0026 33.8 10.4 76 172-253 17-92 (604)
383 PF05615 THOC7: Tho complex su 52.5 1.7E+02 0.0037 26.1 11.3 69 178-252 41-109 (139)
384 KOG1853 LIS1-interacting prote 52.4 2.9E+02 0.0062 28.6 17.2 9 318-326 221-229 (333)
385 PF15188 CCDC-167: Coiled-coil 51.9 41 0.0009 28.8 5.6 60 182-245 4-64 (85)
386 KOG3647 Predicted coiled-coil 51.6 1.5E+02 0.0033 30.7 10.4 12 290-301 192-203 (338)
387 KOG4196 bZIP transcription fac 51.6 62 0.0013 30.0 6.9 27 222-248 79-105 (135)
388 KOG4809 Rab6 GTPase-interactin 51.4 3.4E+02 0.0074 30.8 13.7 24 229-252 329-352 (654)
389 PF06008 Laminin_I: Laminin Do 51.3 2.5E+02 0.0055 27.7 15.5 27 262-288 181-207 (264)
390 PF12999 PRKCSH-like: Glucosid 51.3 71 0.0015 30.7 7.7 13 164-176 98-110 (176)
391 KOG1760 Molecular chaperone Pr 51.1 1.8E+02 0.0038 26.9 9.7 74 179-252 33-116 (131)
392 PF07716 bZIP_2: Basic region 51.0 58 0.0013 24.7 5.8 30 223-252 24-53 (54)
393 PLN02320 seryl-tRNA synthetase 51.0 1.3E+02 0.0027 33.4 10.5 33 217-249 93-125 (502)
394 PRK11578 macrolide transporter 50.9 1.7E+02 0.0037 29.9 11.1 26 274-299 159-184 (370)
395 PF02403 Seryl_tRNA_N: Seryl-t 50.6 1.6E+02 0.0034 25.0 10.3 18 181-198 34-51 (108)
396 COG0172 SerS Seryl-tRNA synthe 50.5 2.2E+02 0.0049 31.0 12.1 93 215-315 27-119 (429)
397 PRK05689 fliJ flagellar biosyn 50.5 1.8E+02 0.004 25.9 15.3 55 219-273 73-127 (147)
398 PF08647 BRE1: BRE1 E3 ubiquit 50.4 1.6E+02 0.0035 25.1 11.6 29 226-254 33-61 (96)
399 KOG2196 Nuclear porin [Nuclear 50.4 2.9E+02 0.0064 28.1 14.7 29 275-303 221-249 (254)
400 KOG0978 E3 ubiquitin ligase in 50.2 4.6E+02 0.01 30.4 18.4 77 228-304 549-625 (698)
401 KOG0018 Structural maintenance 49.5 4.7E+02 0.01 31.9 15.1 35 167-202 724-763 (1141)
402 PF07058 Myosin_HC-like: Myosi 49.4 2.2E+02 0.0048 30.0 11.3 20 178-197 2-21 (351)
403 PF06120 Phage_HK97_TLTM: Tail 49.4 3.3E+02 0.0071 28.4 12.7 28 174-201 86-113 (301)
404 PF14362 DUF4407: Domain of un 49.3 2.6E+02 0.0056 28.0 11.8 20 222-241 140-159 (301)
405 KOG0796 Spliceosome subunit [R 49.3 3.4E+02 0.0074 28.6 12.8 32 172-203 56-89 (319)
406 PF09403 FadA: Adhesion protei 49.3 1.6E+02 0.0034 26.9 9.2 65 234-299 55-119 (126)
407 PF09731 Mitofilin: Mitochondr 49.2 3.9E+02 0.0085 29.3 19.0 20 391-414 532-551 (582)
408 KOG0249 LAR-interacting protei 49.1 4.3E+02 0.0093 31.0 14.3 38 221-258 220-257 (916)
409 PF11180 DUF2968: Protein of u 48.9 2.7E+02 0.0059 27.3 15.4 58 223-280 125-182 (192)
410 KOG3595 Dyneins, heavy chain [ 48.8 5.8E+02 0.012 31.7 16.5 53 152-204 676-728 (1395)
411 KOG4677 Golgi integral membran 48.7 2.7E+02 0.0059 30.8 12.2 63 266-328 348-422 (554)
412 PF15254 CCDC14: Coiled-coil d 48.7 5.2E+02 0.011 30.5 18.1 83 222-304 439-525 (861)
413 PRK09343 prefoldin subunit bet 48.7 2E+02 0.0042 25.6 10.8 25 275-299 87-111 (121)
414 PRK10869 recombination and rep 48.4 4.2E+02 0.0091 29.4 18.2 76 233-313 319-397 (553)
415 PF13863 DUF4200: Domain of un 48.4 1.8E+02 0.0039 25.1 13.7 93 213-305 21-113 (126)
416 PF06632 XRCC4: DNA double-str 48.3 3.5E+02 0.0077 28.5 13.5 26 262-287 183-208 (342)
417 smart00338 BRLZ basic region l 48.0 76 0.0017 24.8 6.3 27 228-254 30-56 (65)
418 TIGR02977 phageshock_pspA phag 47.9 2.7E+02 0.0058 26.9 14.7 51 245-295 99-149 (219)
419 PF05557 MAD: Mitotic checkpoi 47.8 6.1 0.00013 44.5 0.0 100 181-290 310-423 (722)
420 PF13166 AAA_13: AAA domain 47.5 4.4E+02 0.0096 29.3 19.4 10 344-353 547-556 (712)
421 KOG2264 Exostosin EXT1L [Signa 47.4 1.1E+02 0.0023 34.9 9.2 43 217-259 93-135 (907)
422 PLN02678 seryl-tRNA synthetase 47.3 1.5E+02 0.0033 32.3 10.3 30 223-252 77-106 (448)
423 PF00170 bZIP_1: bZIP transcri 47.2 88 0.0019 24.4 6.5 29 228-256 30-58 (64)
424 PF02388 FemAB: FemAB family; 47.2 1.3E+02 0.0029 31.7 9.7 15 189-203 214-228 (406)
425 PF13815 Dzip-like_N: Iguana/D 47.2 68 0.0015 28.2 6.5 30 222-251 85-114 (118)
426 KOG4005 Transcription factor X 47.1 3.3E+02 0.0072 27.8 12.4 17 184-200 60-76 (292)
427 PF09304 Cortex-I_coil: Cortex 46.9 2.2E+02 0.0047 25.6 15.6 9 232-240 59-67 (107)
428 PRK03598 putative efflux pump 46.7 3.2E+02 0.0069 27.5 12.3 89 210-300 74-172 (331)
429 COG5220 TFB3 Cdk activating ki 46.6 1.4E+02 0.003 30.6 9.1 20 185-204 73-94 (314)
430 PRK06800 fliH flagellar assemb 46.6 2E+02 0.0043 28.4 9.9 37 216-252 37-73 (228)
431 PF07889 DUF1664: Protein of u 46.6 2.3E+02 0.005 25.9 11.7 37 264-300 87-123 (126)
432 PF10498 IFT57: Intra-flagella 46.3 3.9E+02 0.0084 28.3 14.5 70 228-297 249-318 (359)
433 PF04977 DivIC: Septum formati 46.2 43 0.00092 26.4 4.6 30 228-257 21-50 (80)
434 PRK05431 seryl-tRNA synthetase 46.1 1.5E+02 0.0033 31.7 10.1 72 175-251 28-100 (425)
435 COG4985 ABC-type phosphate tra 46.1 1.8E+02 0.0038 29.7 9.7 27 228-254 218-244 (289)
436 PF10458 Val_tRNA-synt_C: Valy 45.9 78 0.0017 25.1 6.1 15 226-240 6-20 (66)
437 PF11221 Med21: Subunit 21 of 45.5 1.5E+02 0.0032 27.0 8.6 32 211-242 98-129 (144)
438 PF07851 TMPIT: TMPIT-like pro 45.3 2.7E+02 0.0059 29.3 11.4 26 179-204 7-32 (330)
439 PF08286 Spc24: Spc24 subunit 45.2 7.5 0.00016 34.2 0.2 37 222-258 4-40 (118)
440 KOG2077 JNK/SAPK-associated pr 45.2 1.9E+02 0.004 33.0 10.6 46 213-258 325-370 (832)
441 PF09731 Mitofilin: Mitochondr 45.0 4.6E+02 0.0099 28.8 17.3 11 149-159 225-235 (582)
442 TIGR03545 conserved hypothetic 44.9 3.4E+02 0.0073 30.4 12.8 60 190-251 191-257 (555)
443 TIGR03545 conserved hypothetic 44.8 3.8E+02 0.0083 30.0 13.1 13 223-235 218-230 (555)
444 PF07462 MSP1_C: Merozoite sur 44.6 1.6E+02 0.0035 33.0 10.0 84 261-352 70-157 (574)
445 smart00502 BBC B-Box C-termina 44.3 1.9E+02 0.004 24.1 14.9 76 177-252 8-86 (127)
446 KOG4438 Centromere-associated 44.0 4.7E+02 0.01 28.7 13.8 64 239-302 174-238 (446)
447 PRK12765 flagellar capping pro 43.9 1.1E+02 0.0025 34.2 9.1 55 234-291 535-589 (595)
448 TIGR02971 heterocyst_DevB ABC 43.7 3.4E+02 0.0075 27.0 14.5 20 278-297 184-203 (327)
449 PRK10698 phage shock protein P 43.5 3.3E+02 0.0071 26.7 19.0 51 246-296 100-150 (222)
450 TIGR01554 major_cap_HK97 phage 43.3 2.6E+02 0.0057 28.8 11.1 81 178-271 1-92 (378)
451 PF05008 V-SNARE: Vesicle tran 43.1 1.7E+02 0.0037 23.3 8.0 29 230-258 24-52 (79)
452 PF04012 PspA_IM30: PspA/IM30 42.9 3E+02 0.0066 26.2 16.3 11 152-162 3-13 (221)
453 PRK10476 multidrug resistance 42.8 3.8E+02 0.0082 27.2 14.1 23 181-203 84-106 (346)
454 PF03245 Phage_lysis: Bacterio 42.7 2E+02 0.0044 25.8 8.9 34 245-278 21-54 (125)
455 PF05622 HOOK: HOOK protein; 42.4 8.3 0.00018 43.5 0.0 6 181-186 279-284 (713)
456 KOG3091 Nuclear pore complex, 42.4 85 0.0018 34.7 7.5 24 175-202 337-360 (508)
457 PF11365 DUF3166: Protein of u 42.0 1.2E+02 0.0025 26.6 6.9 89 212-303 3-92 (96)
458 PF12126 DUF3583: Protein of u 41.8 4.4E+02 0.0095 27.7 12.7 36 222-257 51-87 (324)
459 PF13874 Nup54: Nucleoporin co 41.8 1.7E+02 0.0037 26.5 8.4 41 235-275 83-123 (141)
460 COG3334 Uncharacterized conser 41.8 2.1E+02 0.0046 28.0 9.4 37 225-261 71-107 (192)
461 PRK15335 type III secretion sy 41.8 2.6E+02 0.0057 26.0 9.4 22 233-254 68-89 (147)
462 KOG3850 Predicted membrane pro 41.7 5E+02 0.011 28.3 13.8 86 213-298 263-349 (455)
463 PF11365 DUF3166: Protein of u 41.5 2.5E+02 0.0053 24.7 8.8 26 229-254 6-31 (96)
464 PF13747 DUF4164: Domain of un 41.5 2.2E+02 0.0048 24.2 9.0 65 235-303 5-69 (89)
465 PF11488 Lge1: Transcriptional 41.5 2E+02 0.0044 23.8 8.5 26 272-299 52-77 (80)
466 PF04799 Fzo_mitofusin: fzo-li 41.4 2.6E+02 0.0055 27.0 9.7 7 246-252 128-134 (171)
467 PF05700 BCAS2: Breast carcino 41.2 3.5E+02 0.0075 26.3 12.7 73 222-298 141-214 (221)
468 PF07851 TMPIT: TMPIT-like pro 41.2 3.2E+02 0.007 28.8 11.2 29 214-242 8-36 (330)
469 PF14988 DUF4515: Domain of un 40.8 3.5E+02 0.0077 26.3 16.0 25 170-194 16-40 (206)
470 PRK10698 phage shock protein P 40.8 3.6E+02 0.0078 26.4 14.7 21 173-193 28-48 (222)
471 PRK14127 cell division protein 40.8 1.1E+02 0.0023 27.4 6.7 53 213-265 33-102 (109)
472 PTZ00266 NIMA-related protein 40.7 3.5E+02 0.0075 32.7 12.6 9 370-378 662-670 (1021)
473 PF10212 TTKRSYEDQ: Predicted 40.6 5.7E+02 0.012 28.7 16.2 68 175-248 412-479 (518)
474 PRK14160 heat shock protein Gr 40.6 3.7E+02 0.0081 26.5 12.1 30 338-372 137-166 (211)
475 KOG3501 Molecular chaperone Pr 40.2 2.8E+02 0.0061 25.0 11.6 72 174-253 32-103 (114)
476 PF10805 DUF2730: Protein of u 40.2 2.5E+02 0.0054 24.4 9.8 7 197-203 49-55 (106)
477 PF15369 KIAA1328: Uncharacter 40.1 4.8E+02 0.01 27.6 12.5 30 222-251 31-60 (328)
478 TIGR00999 8a0102 Membrane Fusi 40.0 1.8E+02 0.004 27.6 8.8 87 231-321 16-103 (265)
479 PRK10361 DNA recombination pro 39.9 5.6E+02 0.012 28.4 18.2 112 180-301 33-154 (475)
480 PF12018 DUF3508: Domain of un 39.9 4.1E+02 0.0089 26.8 12.4 84 176-259 9-94 (281)
481 PF07111 HCR: Alpha helical co 39.7 6.7E+02 0.015 29.3 17.4 118 179-298 474-596 (739)
482 KOG1003 Actin filament-coating 39.7 3.9E+02 0.0084 26.5 16.0 125 174-298 72-197 (205)
483 COG3883 Uncharacterized protei 39.6 4.4E+02 0.0095 27.1 19.1 121 174-300 36-203 (265)
484 TIGR02971 heterocyst_DevB ABC 39.6 2.6E+02 0.0055 28.0 10.0 73 229-301 53-125 (327)
485 COG4467 Regulator of replicati 39.5 52 0.0011 29.6 4.4 86 227-318 4-95 (114)
486 KOG4572 Predicted DNA-binding 39.4 5.3E+02 0.012 30.9 13.2 119 168-300 953-1072(1424)
487 COG3883 Uncharacterized protei 39.2 4.4E+02 0.0096 27.0 20.2 145 149-301 6-190 (265)
488 PF04880 NUDE_C: NUDE protein, 39.1 52 0.0011 31.3 4.7 58 178-253 2-59 (166)
489 PF08826 DMPK_coil: DMPK coile 38.9 2.1E+02 0.0045 23.1 9.1 61 180-246 1-61 (61)
490 TIGR03495 phage_LysB phage lys 38.6 3.2E+02 0.007 25.2 11.3 72 232-303 20-91 (135)
491 PF09321 DUF1978: Domain of un 38.6 4.4E+02 0.0095 26.8 15.0 109 185-301 93-220 (241)
492 PF06419 COG6: Conserved oligo 38.4 2.9E+02 0.0063 31.1 11.1 93 213-309 34-127 (618)
493 PRK10722 hypothetical protein; 38.4 1.2E+02 0.0026 30.8 7.3 46 219-264 157-209 (247)
494 PF04108 APG17: Autophagy prot 38.3 5.2E+02 0.011 27.5 18.0 126 175-300 254-380 (412)
495 PRK07720 fliJ flagellar biosyn 38.2 2.9E+02 0.0064 24.6 15.1 106 174-279 28-133 (146)
496 PF05149 Flagellar_rod: Parafl 38.0 4.8E+02 0.01 27.0 18.5 126 175-302 12-137 (289)
497 PF01920 Prefoldin_2: Prefoldi 37.8 2.3E+02 0.005 23.3 10.8 82 220-301 1-97 (106)
498 KOG0240 Kinesin (SMY1 subfamil 37.7 6.7E+02 0.014 28.6 14.8 127 173-301 397-524 (607)
499 PF12072 DUF3552: Domain of un 37.7 3.7E+02 0.0081 25.7 14.2 86 214-299 57-143 (201)
500 PF05461 ApoL: Apolipoprotein 37.7 4E+02 0.0086 27.7 11.2 89 183-294 5-93 (313)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-90 Score=699.91 Aligned_cols=380 Identities=49% Similarity=0.766 Sum_probs=350.4
Q ss_pred EeecccccccccCCccCcCCCCCcccccccccccCCCCCceeeccCCCC-CCCCCCCCCCCCCCCcccccCCCCcccceE
Q 013502 33 IVGVDSYADKYLNDSSRSTMHGSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFV 111 (442)
Q Consensus 33 i~g~d~~~~~~~~~~~~~~~~~s~~~~~~s~~~~~~~d~s~vvl~~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~eSfV 111 (442)
+||+|+|+++++..|..+.-.+.++|+..++.+..+|+.+++|+|.+.+ ++.+.|++++++.. +++. ++.++.+|||
T Consensus 1 ~~g~~~s~~~~~q~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~ 78 (447)
T KOG2751|consen 1 IVGVDSSANKFFQVPFPCQRCLQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSV 78 (447)
T ss_pred CcccccccccccCCChhhhhccchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccc
Confidence 5899999999999998888889999999999999999999999999965 99999999999887 5555 8899999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Q 013502 112 VIYKSESASDGGGPHIPPPEGGTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (442)
Q Consensus 112 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lss~i~~l~~lFdILSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E 191 (442)
+.+...+..+....+-+....+..++.+.+.+++++++++++++|+|||++++||||+|.||+|.|++.|+++++.+++|
T Consensus 79 ~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e 158 (447)
T KOG2751|consen 79 VVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDE 158 (447)
T ss_pred eecccCcccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877666655555544444444445567789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 192 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 271 (442)
Q Consensus 192 ~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~ 271 (442)
+++|++|+++|+++..+. +++++.+|+++++.||++|.++|+++|++.++++.++.+++.+..++.++|.+||++||.+
T Consensus 159 ~~~Y~~~l~~Le~~~~~~-~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~ 237 (447)
T KOG2751|consen 159 VDTYKACLQRLEQQNQDV-SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNF 237 (447)
T ss_pred HHHHHHHHHHHhhcCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876543 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHH
Q 013502 272 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHT 351 (442)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~t 351 (442)
++++.+++++++||++++++++.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++
T Consensus 238 ~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~ 317 (447)
T KOG2751|consen 238 QRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHT 317 (447)
T ss_pred HHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcc-cceeeeecCCcceeecCCC---ceeeccccc-ccchhhhhccHHHHHhhhhhHHhhhhhh
Q 013502 352 MCQYFRPKFP-YRIKIIPMGSYPRIMDSNN---NTYELTLQN-LQILRIKRITFHQINALNCPIRLKMTRW 417 (442)
Q Consensus 352 la~kl~~~F~-Yr~kLvPmGS~SkI~~~~~---~~y~Ly~s~-~~~~~~~rfd~~m~~fldc~~q~~~~~~ 417 (442)
|++|+|++|+ |+ ||||||||+|++... ..||||++| .+|+|.+|||+||++|||||+||.++-=
T Consensus 318 l~~kig~~~~~y~--lvp~GshSyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~ 386 (447)
T KOG2751|consen 318 LANKIGLNFVRYR--LVPMGSHSYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELE 386 (447)
T ss_pred HHHhcCcccceee--eecccchhHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHH
Confidence 9999999998 66 999999999997653 589999766 7999999999999999999999998753
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=1.3e-75 Score=583.75 Aligned_cols=247 Identities=40% Similarity=0.752 Sum_probs=175.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (442)
Q Consensus 168 PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El 247 (442)
|||.||++.|++.|+.+++++++|+++|..||++++.+.....+.+++.+++.++++||++|.++|+++|++.+++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853222223466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013502 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (442)
Q Consensus 248 ~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (442)
.+++.+.++++++|++||+++|.+++++.+++++++++++||+++++||++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCcceeecCC----Cceeecccccc----cchhhhhcc
Q 013502 328 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELTLQNL----QILRIKRIT 399 (442)
Q Consensus 328 lp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~SkI~~~~----~~~y~Ly~s~~----~~~~~~rfd 399 (442)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||||+|++.. +.+|||||++. ++++.++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999998 44499999999999875 57999999884 789999999
Q ss_pred HHHHHhhhhhHHhhhh
Q 013502 400 FHQINALNCPIRLKMT 415 (442)
Q Consensus 400 ~~m~~fldc~~q~~~~ 415 (442)
.||++||+|++||.+.
T Consensus 240 ~am~~~L~~~~q~~~~ 255 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEF 255 (314)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999864
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.52 E-value=6.1e-12 Score=121.59 Aligned_cols=245 Identities=19% Similarity=0.225 Sum_probs=143.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR--DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (442)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~--~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l 243 (442)
-..+|..|+..=+-.++..+.++..+.+....-++.+-.... .......+..+...++.....+..+++.+.++.++.
T Consensus 10 ~~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 10 RRFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK 89 (302)
T ss_pred CCeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999888765554322100 000112222333334444444555555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCceeeee--------
Q 013502 244 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH-------- 313 (442)
Q Consensus 244 ~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk--LrktNV~Nd~F~I~h-------- 313 (442)
.+.+.++..+.......-..+..........+.+..++......++.....++.. -+...-+...|.|..
T Consensus 90 r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~ 169 (302)
T PF10186_consen 90 RERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPS 169 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCC
Confidence 4444444433322222111222222233333333333333333333332222221 112223556899932
Q ss_pred ---cCCeeeeccccCCCCCC-CCCChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCcceeecC---CCceeecc
Q 013502 314 ---DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELT 386 (442)
Q Consensus 314 ---dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~SkI~~~---~~~~y~Ly 386 (442)
.+.|. |.|++|-...+ ...+=++|+||+|.++.|+..+|.+|++.+-|+ +.|+||+|.|.+. .+..++.+
T Consensus 170 ~~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~Lpy~--i~~~gs~s~i~d~~~~~~~~~~~~ 246 (302)
T PF10186_consen 170 DSSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPLPYP--ITPSGSRSTIIDFSPSIDRPLPSL 246 (302)
T ss_pred CCCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--cccCccccchhhcccccCCcchhh
Confidence 35665 99998876532 345568999999999999999999999888766 9999999999882 22233322
Q ss_pred cccccchhhhhccHHHHHhhhhhHHhhh
Q 013502 387 LQNLQILRIKRITFHQINALNCPIRLKM 414 (442)
Q Consensus 387 ~s~~~~~~~~rfd~~m~~fldc~~q~~~ 414 (442)
... .-....+|.+|+.++..++.||--
T Consensus 247 ~~~-~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 247 SYE-SGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred hcc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence 221 123578999999999999999865
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.2e-09 Score=113.44 Aligned_cols=246 Identities=11% Similarity=-0.009 Sum_probs=137.2
Q ss_pred CCCCcccceEEEecCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcccchHHHHHHHHHhhcCCCCcCCcchHHHHHHHHHH
Q 013502 102 SGKAMDESFVVIYKSESASDGGGPHIPPPEGGTN-GPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDK 180 (442)
Q Consensus 102 ~~~~~~eSfV~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lss~i~~l~~lFdILSs~s~IDhPLC~ECtd~Lle~ 180 (442)
.+..|.|+++.+... .++.++.+..+..+++.. ++..+ ...++....+-...|+-.++++.+|||.|..|...+...
T Consensus 35 ~~~~~~~~~~p~~~~-~~~~~~~t~~~~a~~~~~~~~~~~-~~~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (447)
T KOG2751|consen 35 DRMDISELVLPLHKP-PQSQGGPTRPRGASSGDATSGKTP-QESSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTL 112 (447)
T ss_pred cccchhhccCCCCCC-ccccCCCccCccccCccccCCcch-hhccceecccCcccccccccccccccccccchhhhhHHH
Confidence 344566666666554 223333333222222211 22222 233555666667888999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHH----------HHHHHH----hchhcccCCH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYE----------ACLQRL----EGEARDVLSE----ADFLKEKLK--IEEEERKLEAAIEETEKQN 240 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~----------~fL~~L----e~e~~~~~s~----e~l~~El~~--LE~EE~~L~~eLeeLEkE~ 240 (442)
+-+=.-.+...--.|. .|.+-| .++...+..+ +.+...++. -..++..+..|++++..|.
T Consensus 113 s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE 192 (447)
T KOG2751|consen 113 SATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEE 192 (447)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 4433322222222221 122211 1111000000 000000000 0113334444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee------eeec
Q 013502 241 AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP------IWHD 314 (442)
Q Consensus 241 ~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~------I~hd 314 (442)
+++-+++++++++...++.++.+ +-...++..++.++|.+-|. |-|+
T Consensus 193 ~~L~q~lk~le~~~~~l~~~l~e---------------------------~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~ 245 (447)
T KOG2751|consen 193 ERLLQQLEELEKEEAELDHQLKE---------------------------LEFKAERLNEEEDQYWREYNNFQRQLIEHQ 245 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 55555544444444444333321 11122333444444444443 5678
Q ss_pred CCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCcceeec
Q 013502 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD 377 (442)
Q Consensus 315 G~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~SkI~~ 377 (442)
|...+|++.|.++++...+-|.+++++||-.+.+.-.++...|+.+. ||..+|.|..+-+..
T Consensus 246 del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG-~lp~~pVew~EINAA 307 (447)
T KOG2751|consen 246 DELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLG-RLPSVPVEWDEINAA 307 (447)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceec-cccCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999988887 466999998886653
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.80 E-value=1.1e-06 Score=90.28 Aligned_cols=152 Identities=20% Similarity=0.244 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC-Ce------
Q 013502 248 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG-EF------ 317 (442)
Q Consensus 248 ~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~N---d~F~I~hdG-~f------ 317 (442)
..++.-...++..+.++-...-.++.++.++.+.+-+ |...++++..- ++|.|..+| +.
T Consensus 134 ~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~-----------l~a~re~fL~~~~~~~~~irq~~~~~s~i~~l 202 (377)
T KOG2896|consen 134 AHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNE-----------LVAKRELFLEQRIQDTFKIRQDGSPLSKILPL 202 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----------HHHHHHhhHhHHHhhhhhhhccCcchheeecC
Confidence 3333333444445545545444555554444444443 34444444433 678888776 11
Q ss_pred --------eeeccccCCCCCCCCC-ChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCcceeecCCCc------e
Q 013502 318 --------GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNNN------T 382 (442)
Q Consensus 318 --------GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~SkI~~~~~~------~ 382 (442)
-||.|++|--.++..- +=-|+-||+|.++.|+++||..|.+.+.|+ |++-||.|+|.|.-+. +
T Consensus 203 ~~~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pLRYP--Il~~~Sks~I~D~i~~~~~ttr~ 280 (377)
T KOG2896|consen 203 QFSYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPLRYP--ILLAGSKSYIRDYIPDIETTTRE 280 (377)
T ss_pred CcccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhccccccc--cccccccceecccCCcccccccc
Confidence 3677777766554222 356899999999999999999998888787 9999999999985322 4
Q ss_pred eecccccccchhhhhccHHHHHhhhhhHHhhhh
Q 013502 383 YELTLQNLQILRIKRITFHQINALNCPIRLKMT 415 (442)
Q Consensus 383 y~Ly~s~~~~~~~~rfd~~m~~fldc~~q~~~~ 415 (442)
+|||--.. ..-+|.+||...-..+-||-..
T Consensus 281 fply~k~~---~~e~f~~glylL~qNiaqlr~~ 310 (377)
T KOG2896|consen 281 FPLYTKSQ---EIEQFEYGLYLLNQNIAQLRYD 310 (377)
T ss_pred ccCccccc---hHHHHHHHHHHHhccHHHHHHH
Confidence 89996555 3678999999888888887654
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.26 E-value=0.093 Score=53.57 Aligned_cols=207 Identities=20% Similarity=0.208 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (442)
Q Consensus 189 ~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~ 268 (442)
..+.+.+..-++.++.+ ++.+.+|+.+||.|..++.++|.+++.+.++++++......+...+.-+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666653 456778888899999999999999999888888777766666655554444555555
Q ss_pred HHHHHHHHHHHHHHHHH---------------------------------------HHHHHHHHHHHHHH-hhcccCCCc
Q 013502 269 NNFQFQLIAHQEERDAI---------------------------------------SSKIEVSQAHLELL-KRTNVLNDA 308 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl---------------------------------------~~q~~~~q~qLdkL-rktNV~Nd~ 308 (442)
..+..+.....++++.+ ++..-++---|..| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 55555555555544432 22222222333333 344433355
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChhhHHHHHHHHHHHHHHHHhhcC---C-CcccceeeeecCC
Q 013502 309 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 371 (442)
Q Consensus 309 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~kl~---~-~F~Yr~kLvPmGS 371 (442)
|.|-.-|.|.+|--+.-+. ..+ ....+..+|.|+--.+-+|.-++..+. . .|.+.|+|.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 7777777777765554211 001 124688999999887777777777653 1 233112231
Q ss_pred cceeecCCCceeecccccccchhhhhccHHHHHhhhhhHHhh
Q 013502 372 YPRIMDSNNNTYELTLQNLQILRIKRITFHQINALNCPIRLK 413 (442)
Q Consensus 372 ~SkI~~~~~~~y~Ly~s~~~~~~~~rfd~~m~~fldc~~q~~ 413 (442)
.-+|-+ ..+-+ .|....+++.||.-+|-++|-+-
T Consensus 272 ~~~I~~---~si~~-----~~~~~~~WT~AlK~lLtnlKw~l 305 (314)
T PF04111_consen 272 KDKIGG---VSIKL-----QFNSEEEWTKALKYLLTNLKWLL 305 (314)
T ss_dssp TTEECT---CES-S-----TTS-HHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeee-----cCCChhHHHHHHHHHHHHHHHHH
Confidence 222222 23333 33455699999999999998653
No 7
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.85 E-value=0.063 Score=62.25 Aligned_cols=84 Identities=20% Similarity=0.223 Sum_probs=60.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEE-RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 220 ~~LE~EE-~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
..++++. +.+..++.+.|++...|..|.+.++.....|.++++.+-.++..-+.++...+.+...+..++++.+.+|..
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~ 461 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKD 461 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 455666666777777777777777777777777777777777777777777777777888889999999999
Q ss_pred Hhhcc
Q 013502 299 LKRTN 303 (442)
Q Consensus 299 LrktN 303 (442)
|++++
T Consensus 462 lk~~k 466 (1074)
T KOG0250|consen 462 LKKTK 466 (1074)
T ss_pred HHhcc
Confidence 98764
No 8
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.78 E-value=0.14 Score=50.80 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
.++.+|.+++.+.-.++.|..+|++++.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e 39 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAE 39 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 46678888888888888888888877643
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.38 E-value=0.12 Score=59.01 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 233 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 233 LeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+.+++.+...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.
T Consensus 436 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~ 501 (1164)
T TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444555555555555555555555555555444444333
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=96.19 E-value=0.3 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 263 RYWQEFNNFQFQLIAHQEERDAIS 286 (442)
Q Consensus 263 ~~W~e~N~~q~qL~~~~eE~~sl~ 286 (442)
.|+..++.++.++..++.+...+.
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~ 327 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIE 327 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444433
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.08 E-value=0.42 Score=44.44 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
..+..+++++++.++.......++..++... ....+.+...+++...+....+.+.++..++.+++.+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444321 1112333344555555555566666666555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 256 RFKELEERYWQEFNNFQFQLIAHQ 279 (442)
Q Consensus 256 ~L~eeEe~~W~e~N~~q~qL~~~~ 279 (442)
.+...-++.+..++.++..+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554444433
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.93 E-value=0.47 Score=54.38 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=10.6
Q ss_pred cCCCCCCCCCCh-hhHHHHHHH
Q 013502 324 RLGRLPKIPVEW-DEINAAWGQ 344 (442)
Q Consensus 324 RLGrlp~~~V~W-~EINAAwGQ 344 (442)
++|.+-.++-.| .=|-+|+|.
T Consensus 526 ~l~dli~v~~~y~~Aie~~lg~ 547 (1164)
T TIGR02169 526 TVAQLGSVGERYATAIEVAAGN 547 (1164)
T ss_pred cHHHhcCcCHHHHHHHHHHhhh
Confidence 455554555444 235555663
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.90 E-value=0.22 Score=53.05 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=8.7
Q ss_pred CCcchHHHHHHHHH
Q 013502 166 EQPLCLECMRVLSD 179 (442)
Q Consensus 166 DhPLC~ECtd~Lle 179 (442)
.++.|..|...+-+
T Consensus 283 ~~~~Cp~C~~~~~~ 296 (562)
T PHA02562 283 KGGVCPTCTQQISE 296 (562)
T ss_pred CCCCCCCCCCcCCC
Confidence 36678877655533
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.69 E-value=0.19 Score=59.28 Aligned_cols=97 Identities=21% Similarity=0.337 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC
Q 013502 239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG 315 (442)
Q Consensus 239 E~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~N---d~F~I~hdG 315 (442)
+.+++..++..++.....+.+.-...|+++...+..+..+..+..++..++......... .+..- ........|
T Consensus 440 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~G 516 (1163)
T COG1196 440 ELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESGLPG 516 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhccCCC
Confidence 333344444444444444444445566666666666666666666655555544443332 00000 011112345
Q ss_pred CeeeeccccCCCCCCCCCChhh-HHHHHH
Q 013502 316 EFGTINNFRLGRLPKIPVEWDE-INAAWG 343 (442)
Q Consensus 316 ~fGTINGlRLGrlp~~~V~W~E-INAAwG 343 (442)
.||+ +|-+-.++..|.- |=+|+|
T Consensus 517 v~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 517 VYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred ccch-----HHHhcCcChHHHHHHHHHcc
Confidence 5554 3444445556766 666666
No 15
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.69 E-value=0.65 Score=47.75 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH-HH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA-DF----LK-------EKLKIEEEERKLEAAIEETEKQNAEV 243 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e-~l----~~-------El~~LE~EE~~L~~eLeeLEkE~~~l 243 (442)
.-++.|++++..++.|......-..+|..++...-..+ .+ .+ ++..|.+|..+...+......|...|
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998888877777765432110001 01 11 12223333333333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 244 NAELKELELKSKRFKELEERYW-------QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 244 ~~El~~le~e~~~L~eeEe~~W-------~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
-.++-+++.+.+.+-.+-+..- ..-+.++.++.++++.-.-+.+.+.-++.+|..||+.|
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 4444444444433322222222 22344555566666666666666677999999999876
No 16
>PRK11637 AmiB activator; Provisional
Probab=95.45 E-value=0.34 Score=50.88 Aligned_cols=73 Identities=19% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|.+++.+...++.+|..++.++..+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766666555431 223334444444444445555555555555555555444444333
No 17
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.41 E-value=1.1 Score=44.57 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ-------LIAHQEERDAISS 287 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q-------L~~~~eE~~sl~~ 287 (442)
|..|+..++.....|..+|.++..+.+.+..++..+..+. ..+|..+-.....+... ...+..++..+..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~---~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~ 170 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL---ERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666666666666666666655555433 33343444444444444 4444444444444
Q ss_pred HHH-HHHHHHHHHhhcccCCCceeeeecCCeeeeccccCC
Q 013502 288 KIE-VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLG 326 (442)
Q Consensus 288 q~~-~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLG 326 (442)
.+. ......+++++.+ -+-..+.|+|=+=|
T Consensus 171 ~l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~ 201 (239)
T COG1579 171 KLDPELLSEYERIRKNK---------KGVGVVPLEGRVCG 201 (239)
T ss_pred hcCHHHHHHHHHHHhcC---------CCceEEeecCCccc
Confidence 443 3334556666643 02245666665554
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.28 E-value=1.4 Score=50.31 Aligned_cols=7 Identities=43% Similarity=0.529 Sum_probs=4.3
Q ss_pred eEEeecc
Q 013502 31 LCIVGVD 37 (442)
Q Consensus 31 l~i~g~d 37 (442)
.+|||+-
T Consensus 26 ~~i~G~N 32 (1179)
T TIGR02168 26 TGIVGPN 32 (1179)
T ss_pred EEEECCC
Confidence 4677764
No 19
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=0.71 Score=54.42 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~e 280 (442)
..+...+|..++.+...+..|+.+.+++...+..++..+-...+.+...+.+...
T Consensus 537 ~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 537 LKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666677777777777777776666666666555444443
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.18 E-value=1.3 Score=45.31 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=27.1
Q ss_pred CcccchHHHHHHHHHhhcCCCCcCCcchH-HH---HHHHHHHHHHHHHHH
Q 013502 143 SGFHSTITVLKRAFEIATSQTQVEQPLCL-EC---MRVLSDKLDKEVDDV 188 (442)
Q Consensus 143 ~~lss~i~~l~~lFdILSs~s~IDhPLC~-EC---td~Lle~Ld~qle~~ 188 (442)
..|.+.|.--.++|.=+...+..+.|-.. |= .+-....|+.|+..+
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~v 127 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLV 127 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34666777777888777777777777665 11 122334455555543
No 21
>PRK11637 AmiB activator; Provisional
Probab=95.14 E-value=1.7 Score=45.62 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~s 284 (442)
+....++|..+..+++.+++++...+.+++.+...|+.+..+.=..+..++.++...+.++..
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~ 237 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSE 237 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555444444444444333333343333333333333
No 22
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.14 E-value=1.3 Score=51.60 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
|..|+..| ..|..+.+...++...|..+..
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544 3366666666666666554433
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.59 E-value=1.8 Score=47.75 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=9.1
Q ss_pred cccCCCCcccceEEEec
Q 013502 99 ASQSGKAMDESFVVIYK 115 (442)
Q Consensus 99 ~~~~~~~~~eSfV~l~~ 115 (442)
+.-.++.-.+=|.|.|=
T Consensus 79 ayyLPk~~~e~YqfcYv 95 (546)
T PF07888_consen 79 AYYLPKDDDEFYQFCYV 95 (546)
T ss_pred cccCCCCCCCeEEEEEE
Confidence 34444444466777763
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.53 E-value=1.6 Score=51.31 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAI-EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 222 LE~EE~~L~~eL-eeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+++....+.++. +.+..++.+.+.+++.|+.+.+.++++..+.=.+++.++..+..-++++..++..+......++
T Consensus 377 l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~ 453 (1074)
T KOG0250|consen 377 LEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIE 453 (1074)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 4555566666667777777777777777777777777777777777777777666655554443
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.45 E-value=1.5 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
++.++...+.+.+.|...+..++.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444444444445555554443
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.44 E-value=5.4 Score=39.09 Aligned_cols=54 Identities=17% Similarity=0.350 Sum_probs=38.6
Q ss_pred hhcccCCCceeeeecCCeeeeccccCCCCC---------------CCCCChhhHHHHHHHHHHHHHHHHhh
Q 013502 300 KRTNVLNDAFPIWHDGEFGTINNFRLGRLP---------------KIPVEWDEINAAWGQACLLLHTMCQY 355 (442)
Q Consensus 300 rktNV~Nd~F~I~hdG~fGTINGlRLGrlp---------------~~~V~W~EINAAwGQ~~LLL~tla~k 355 (442)
+...+|..+..| ||.=-+.+=|||||+. ...=.|..+...+...+--..-||++
T Consensus 166 ~~i~~~~~~i~~--dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia~k 234 (251)
T PF11932_consen 166 RTIEVYQGTITL--DGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIARK 234 (251)
T ss_pred CceeEEEEEEeE--CCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHHhC
Confidence 444555555555 8888889999999874 12336888877888777777777876
No 27
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.38 E-value=3.9 Score=37.97 Aligned_cols=23 Identities=13% Similarity=0.472 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
..++++..+.+|.+.....+..+
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554444443
No 28
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.36 E-value=2.4 Score=41.40 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
++.+..+....++.+|....+|..++..+....+.++..+.++-.-...+..++..+...+..+..+++.+.....+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555544444444444444444444445555555555555555555555544444443
No 29
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.33 E-value=1.3 Score=47.26 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=58.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 167 hPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
+|.|..| ....+++++++.+|+..-..-+....++ -..+.+++..+|.+...++.+|.+.+.++.++.+.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~------~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQ------RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667777 4445577777777776666555544332 24566777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 247 LKELELKSKRFKELE 261 (442)
Q Consensus 247 l~~le~e~~~L~eeE 261 (442)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777776666555
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.19 E-value=4.1 Score=42.28 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-----ccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 247 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~-----~~~-s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El 247 (442)
...-++.|.+++.++..|++.+..-+.+.+.... ..+ ..+++..+++++.+.-..|+..+..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444678999999999999999988887653221 111 2356677777777777888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 248 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 248 ~~le~e~~~L~eeEe--------------~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
...+.+..+|+.+-. ...-+-.-++-++...++|...+...+.-...-|++ ++.|
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~-k~~~ 232 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER-KRKK 232 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 888888877764421 112222334456888899999998888888888885 4443
No 31
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.14 E-value=4.6 Score=41.53 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=84.9
Q ss_pred ccchHHHHHHHHHhhcCCCCcCCcc-hHHHH---HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhchhc---c---
Q 013502 145 FHSTITVLKRAFEIATSQTQVEQPL-CLECM---RVLSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR---D--- 208 (442)
Q Consensus 145 lss~i~~l~~lFdILSs~s~IDhPL-C~ECt---d~Lle~Ld~qle~------~~~E~d~Y~~fL~~Le~e~~---~--- 208 (442)
|..+|.-=.++|.=+...+.++.|. =.|=+ .-....|+.|+.- ++....=|..=.+-+++-.. .
T Consensus 75 L~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~ 154 (312)
T smart00787 75 LKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLE 154 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777778888888888877764 22222 2223334455443 34455556544333332100 0
Q ss_pred cC-CHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 209 VL-SEA-DFLK-------EKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQFQL 275 (442)
Q Consensus 209 ~~-s~e-~l~~-------El~~LE~EE~~L~~eLeeLEkE~~~l~~----El~~le~e~~~L~eeEe~~W~e~N~~q~qL 275 (442)
.+ .+. -+.+ -+-.+.+....|..++..|.+-..+++. ++..++.+...++.+-...-++..+++.++
T Consensus 155 ~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 155 GLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 1111 1112344444555555555544444422 566666666666666666667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 276 IAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 276 ~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.++........++..-.+.++..+++
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777766
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.13 E-value=5.8 Score=38.23 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
||..|+.++.+..+.......-+..+
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei 53 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEI 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566555554444444444433
No 33
>PRK09039 hypothetical protein; Validated
Probab=94.08 E-value=3.1 Score=43.06 Aligned_cols=13 Identities=8% Similarity=0.095 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 013502 342 WGQACLLLHTMCQ 354 (442)
Q Consensus 342 wGQ~~LLL~tla~ 354 (442)
|.+++-.|..+.+
T Consensus 243 L~~ia~~l~~~~~ 255 (343)
T PRK09039 243 IAKLAAALIELAK 255 (343)
T ss_pred HHHHHHHHHHhhh
Confidence 4444444444433
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=94.02 E-value=2.3 Score=48.23 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 013502 279 QEERDAISSKIEV 291 (442)
Q Consensus 279 ~eE~~sl~~q~~~ 291 (442)
..++..+..+|..
T Consensus 673 ~~~~~~l~~~i~~ 685 (880)
T PRK02224 673 REERDDLQAEIGA 685 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 35
>PRK02224 chromosome segregation protein; Provisional
Probab=94.01 E-value=1.5 Score=49.66 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=4.3
Q ss_pred CCcceee
Q 013502 370 GSYPRIM 376 (442)
Q Consensus 370 GS~SkI~ 376 (442)
|.|+.|.
T Consensus 754 ~~~~~i~ 760 (880)
T PRK02224 754 DAYSHIE 760 (880)
T ss_pred CCeeEEE
Confidence 5566665
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.01 E-value=6.4 Score=38.42 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
.++...+.--..+...+.+||.+...+...+..++.......+.|..|=..+..+..++.+.....+..+.........+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777788888888888888888888777777777777777777777777776666666666665555555
Q ss_pred HHHh
Q 013502 297 ELLK 300 (442)
Q Consensus 297 dkLr 300 (442)
+.|.
T Consensus 207 d~le 210 (237)
T PF00261_consen 207 DRLE 210 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.99 E-value=2.8 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 276 IAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 276 ~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..+.+++..+..++..++.+...|++
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~ 311 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRK 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
No 38
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.98 E-value=2.3 Score=52.01 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~N 306 (442)
..++.++.+.+.+.+.+..+....+..+..|.+.+-++
T Consensus 393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444444444
No 39
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.94 E-value=0.34 Score=48.10 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
...++++.+|..+|..+++++|.+.++++..++.++.|..+|++.-+..--+|..++..+.++.+.....+.
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~ 212 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHH
Confidence 334555667778899999999999999999999999999999988888888899999888888877665443
No 40
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.84 E-value=2.9 Score=47.52 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=93.1
Q ss_pred cCCcchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 165 VEQPLCLECMRVLSDKLDKEV-------DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 237 (442)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~ql-------e~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLE 237 (442)
-..|.=.||...|.+..+.=- +.+..|.+.....|+...++.-. .-.++.++++.+.+.-++|...++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677899988875533222 22223333333333322211100 122334444555555555666666666
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013502 238 KQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 238 kE~~~l~~El~~le~e~----~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~h 313 (442)
...+.|.+.+..+-... -.+-.-|.+|-++...++.++..++...+.+++++++.+.+++ ++.+.-
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~-------- 676 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPK-------- 676 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc--------
Confidence 55555555444443222 2245667778888877777777777777777777777666655 222211
Q ss_pred cCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 013502 314 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (442)
Q Consensus 314 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (442)
..+++ +| .--+..|-.++.|-.--+..+.+++
T Consensus 677 ---~~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 677 ---KKSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ---CCCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 22 3568889999998888887777654
No 41
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.84 E-value=1.1 Score=42.23 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIE 193 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d 193 (442)
.+..+++..++.+.++++
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345566777776666664
No 42
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=2 Score=44.91 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 190 RDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 190 ~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
+|.+.|......|+. .++++.+-..+|++++++|++++..|.++.+-|..-.++
T Consensus 225 eeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444432 235555556667777777777777777777766655554
No 43
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.77 E-value=3.7 Score=48.69 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHhhcCCCCcCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 145 FHSTITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 145 lss~i~~l~~lFdILSs~s~IDh-------------PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
++.+..-...+|+=.++-+..+. --|..| +.++..+..+++.++++++.-..|++
T Consensus 150 ~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 150 INAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556766665433221 125554 44556688888888888877666655
No 44
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.70 E-value=3 Score=42.42 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013502 280 EERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLr 300 (442)
+++..+..++..++.+++.++
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~ 266 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKAR 266 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666544
No 45
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.56 E-value=8 Score=40.04 Aligned_cols=13 Identities=31% Similarity=0.394 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 013502 338 INAAWGQACLLLH 350 (442)
Q Consensus 338 INAAwGQ~~LLL~ 350 (442)
||.=|.|+--|..
T Consensus 180 vN~L~Kqm~~l~~ 192 (310)
T PF09755_consen 180 VNRLWKQMDKLEA 192 (310)
T ss_pred HHHHHHHHHHHHH
Confidence 7888999887764
No 46
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.48 E-value=4.1 Score=44.76 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 188 VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 267 (442)
Q Consensus 188 ~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e 267 (442)
.++|-..|--|+++|..-... ..-+.+++...-+|..++.+++..|+.+...++++++.+.-|.+.+++.-..|-..
T Consensus 193 ~~keq~~y~~~~KelrdtN~q---~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 193 EEKEQQLYGDCVKELRDTNTQ---ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777788888877642211 11234455555555666666666666666666666666666665565555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~h 313 (442)
-..++.++.+.+++---....++-++..|..|+.+...+....-.|
T Consensus 270 ~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~ 315 (596)
T KOG4360|consen 270 QRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEAL 315 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHH
Confidence 5555566666666666666777888899999999988887665444
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.43 E-value=3.8 Score=44.97 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
..+=.+.+-+.+|.=++..++|..++....+
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777778888888888765444
No 48
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.37 E-value=4 Score=40.38 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
+|+..|..|.....++|.++......++..|+.++.+..
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 49
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.26 E-value=1.9 Score=51.22 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~h 313 (442)
+.-..+|..++.+...|...+.....|+++|+..||+.+.=-|.|
T Consensus 1263 ~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~ 1307 (1758)
T KOG0994|consen 1263 PLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRH 1307 (1758)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHH
Confidence 344578889999999999999999999999999999875444444
No 50
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.26 E-value=8.6 Score=39.11 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
..++.++..+..+...+..+++
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555544444
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.03 E-value=1.6 Score=42.38 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
.+..|++|++.++.+.+.-..-++.. ..++..++...+.+..+|.++.++|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776665444422221110 122333333344444445555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 013502 257 FKELEERYW 265 (442)
Q Consensus 257 L~eeEe~~W 265 (442)
+++.+..-|
T Consensus 165 ~~~~~~~~w 173 (206)
T PRK10884 165 KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHH
Confidence 554444333
No 52
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.99 E-value=6.4 Score=35.19 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 257 L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
|+..+...-.....++.++.+.....+.|..|....-+||+.|
T Consensus 89 l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 89 LEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444334455667777777777777877777777777765
No 53
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.80 E-value=6 Score=43.88 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=11.4
Q ss_pred hhhccHHHHHhhhhhHHhh
Q 013502 395 IKRITFHQINALNCPIRLK 413 (442)
Q Consensus 395 ~~rfd~~m~~fldc~~q~~ 413 (442)
.++++.+|-..-+.+++++
T Consensus 487 ~~k~~~E~e~le~~l~~l~ 505 (581)
T KOG0995|consen 487 WKKCRKEIEKLEEELLNLK 505 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665554
No 54
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.70 E-value=7.9 Score=35.47 Aligned_cols=65 Identities=26% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
|...|..||.+.+..+..+.....+....+.-=+ .|.++...++.+++..+.+|+-...++..++
T Consensus 78 l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae-------~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAEKKLKETTEKLREADVKAE-------HFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444433333322221 2334444445555555555555555554443
No 55
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.55 E-value=4.9 Score=42.62 Aligned_cols=27 Identities=15% Similarity=0.437 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
++.++.++..+..+...|...++.+++
T Consensus 174 ~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 174 KAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666666666666665544
No 56
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.53 E-value=8.7 Score=36.96 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444434445556666666665555655555555544
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.50 E-value=11 Score=41.92 Aligned_cols=29 Identities=10% Similarity=0.373 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
-++-|.+....++.|..-|+.++..++..
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 45667778888888888888888877654
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.47 E-value=0.95 Score=42.86 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
+-.+..++..+.+.+.....-|.
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~ 98 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLV 98 (194)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 33456666666555555444333
No 59
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.46 E-value=4 Score=48.07 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
+++.+++.....-..+|+.++.+..++...|+.-+.-..+++..|...-+.-..++..+...++...++-.+
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~k 554 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEK 554 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444555555555555555555544444455555666555555566666666666655554333
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.42 E-value=3.5 Score=50.45 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
...++|.-++.+.+.++..++.++..+...++.+++.
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666777777777666666553
No 61
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.22 E-value=12 Score=38.40 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
+.|.+.|+..++.+..|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655555543
No 62
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.11 E-value=5.4 Score=46.80 Aligned_cols=108 Identities=22% Similarity=0.383 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceee-------eecCCee
Q 013502 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPI-------WHDGEFG 318 (442)
Q Consensus 246 El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I-------~hdG~fG 318 (442)
+...+..+..++...-+..|++-+.++..+....++ +..++.+|...-..+|+|-.=.| ...|.||
T Consensus 454 ~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~d-------l~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G 526 (1200)
T KOG0964|consen 454 ENTELKRELDELQDKRKELWREEKKLRSLIANLEED-------LSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFG 526 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccce
Confidence 333334444444455556777777766554444443 44555556655555666532111 1467777
Q ss_pred eecccc-C------------C-CCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecC
Q 013502 319 TINNFR-L------------G-RLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMG 370 (442)
Q Consensus 319 TINGlR-L------------G-rlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmG 370 (442)
|.-.|= . | +|=++-|+=+|| +..+|..+-+ + ++. |..++||-
T Consensus 527 ~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndev------ATkIl~~~n~-m--~~G-rVTF~PLN 582 (1200)
T KOG0964|consen 527 TVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEV------ATKILRKLNK-M--KGG-RVTFMPLN 582 (1200)
T ss_pred ehhhhhcCCHHHHhHHhhhcccceEEEEecccHH------HHHHHHHHHh-c--cCC-eeEEeecc
Confidence 743221 0 0 122356777887 4444444332 2 333 56677776
No 63
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.08 E-value=3.7 Score=39.91 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 280 EERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
+++..+.++.+.+..+++.++++.
T Consensus 146 ~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 146 NQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445555565543
No 64
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.03 E-value=4.7 Score=36.22 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
-.+++.|..++...+.|+..++.-+.+|..+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999999988764
No 65
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.92 E-value=0.67 Score=40.79 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.1
Q ss_pred cCCCceeeeecCCeee
Q 013502 304 VLNDAFPIWHDGEFGT 319 (442)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (442)
+|++=|||.| -+||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999987 56664
No 66
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.91 E-value=9.7 Score=36.71 Aligned_cols=15 Identities=7% Similarity=0.477 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEA 194 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~ 194 (442)
.++.+++++..|...
T Consensus 23 elq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 23 ELQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 67
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.85 E-value=8.5 Score=39.42 Aligned_cols=113 Identities=18% Similarity=0.285 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----hhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~----e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
|++|..|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|...++.+|+.++.+..++.--+
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke-- 94 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE-- 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH--
Confidence 678889999999888775555554432 11110 111123334566666777777777777777666543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 013502 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 307 (442)
Q Consensus 254 ~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd 307 (442)
.. +|-+.-+|.......+.++..+.....+|++.+..+.-.+
T Consensus 95 -~q-----------v~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 95 -SQ-----------VNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 22 3334445555555556666667777778888888777444
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.83 E-value=11 Score=41.92 Aligned_cols=23 Identities=13% Similarity=-0.112 Sum_probs=13.5
Q ss_pred hhhhhccHHHHHhhhhhHHhhhh
Q 013502 393 LRIKRITFHQINALNCPIRLKMT 415 (442)
Q Consensus 393 ~~~~rfd~~m~~fldc~~q~~~~ 415 (442)
-..+|+--.|-..+..++.|-|.
T Consensus 349 ~~i~~mReec~~l~~Elq~LlD~ 371 (546)
T KOG0977|consen 349 AEIAKMREECQQLSVELQKLLDT 371 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhch
Confidence 34555555666666666666654
No 69
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=91.67 E-value=13 Score=35.53 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 247 l~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
+..++.....+.....++-..+..++.++.+++.++..+.++...++.+.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444445666677777777777777777776666554
No 70
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.67 E-value=15 Score=36.49 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q 295 (442)
+..|..++...+..++.+...+......|+.. +.+.|..|=.+...++..+..++.++..+..++......
T Consensus 214 ~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~---l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~e 284 (312)
T PF00038_consen 214 AKEELKELRRQIQSLQAELESLRAKNASLERQ---LRELEQRLDEEREEYQAEIAELEEELAELREEMARQLRE 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhhhhHhhhhhhccccchhhhhhh---HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444432 233334444444555555555555555555555444433
No 71
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.66 E-value=7 Score=43.50 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
..|+++++..|.+|.++-.+||.|.-.|.++
T Consensus 155 r~elKe~KfRE~RllseYSELEEENIsLQKq 185 (772)
T KOG0999|consen 155 RDELKEYKFREARLLSEYSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4566677777888888888777665554444
No 72
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.64 E-value=6.2 Score=43.37 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 240 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (442)
Q Consensus 240 ~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~ 289 (442)
...+..++.++..+...++.+...++...+.+...-.+..+.+..+..++
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555444444444333333
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.60 E-value=6.1 Score=43.94 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 185 le~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
++.+..+.+.|..-.+ ++. ...++.+++.+++.+.+.+..+++.++.+.+.+++++.+++.+.
T Consensus 184 ~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l 246 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSL 246 (650)
T ss_pred HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666543222 111 12345566666777777777777777777777777776666543
No 74
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=91.57 E-value=5.4 Score=40.06 Aligned_cols=103 Identities=25% Similarity=0.387 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETE-KQNAEVNAELKELELKSKRFK---ELE----ERYWQEFNNFQFQLIAHQEERDA 284 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLE-kE~~~l~~El~~le~e~~~L~---eeE----e~~W~e~N~~q~qL~~~~eE~~s 284 (442)
+.+..|+.+--.+-+.|..++..++ .+..-++.+++.|..+..++. ++. ..|=.+.+++|.
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~----------- 228 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQK----------- 228 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-----------
Confidence 3455566665555566677766664 345567777777777665552 122 223333333333
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHH
Q 013502 285 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 342 (442)
Q Consensus 285 l~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 342 (442)
++...+.+|+.|+. -+|.-|-.|.|-. |+ .++|+-.|||-||
T Consensus 229 ---r~~~l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 229 ---RLAQLQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred ---HHHHHHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 34444444444443 2556677888744 22 2578889999998
No 75
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.41 E-value=4 Score=45.56 Aligned_cols=88 Identities=20% Similarity=0.281 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe-~~W~--e~N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
.+++.+++..-++|..+..+|+.+.++++.+++.|+.+..++...++ ..|+ ++...+.....++.++.--....+..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666666666666555543332 3332 23333333333333333333333344
Q ss_pred HHHHHHHhhcc
Q 013502 293 QAHLELLKRTN 303 (442)
Q Consensus 293 q~qLdkLrktN 303 (442)
...|.+|++.+
T Consensus 501 ~~~l~~l~k~~ 511 (652)
T COG2433 501 ERKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHH
Confidence 44455555443
No 76
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.21 E-value=14 Score=35.57 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~ 291 (442)
+..+......++.|++.+..++..
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~~ 132 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666655555443
No 77
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.15 E-value=11 Score=33.99 Aligned_cols=6 Identities=50% Similarity=0.661 Sum_probs=2.7
Q ss_pred HHHHHh
Q 013502 295 HLELLK 300 (442)
Q Consensus 295 qLdkLr 300 (442)
++++|+
T Consensus 141 E~~kLk 146 (151)
T PF11559_consen 141 EIEKLK 146 (151)
T ss_pred HHHHHH
Confidence 344444
No 78
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.91 E-value=5.9 Score=47.67 Aligned_cols=15 Identities=20% Similarity=0.565 Sum_probs=9.7
Q ss_pred eeecCCeee-eccccC
Q 013502 311 IWHDGEFGT-INNFRL 325 (442)
Q Consensus 311 I~hdG~fGT-INGlRL 325 (442)
+|..-.-|| |.++|+
T Consensus 1149 ~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1149 LWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHcCccHHHHhhc
Confidence 555433344 899999
No 79
>PRK01156 chromosome segregation protein; Provisional
Probab=90.88 E-value=9.7 Score=43.59 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
++.....+.++..+...++.++......++.|++.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~ 445 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRN 445 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777778888888888777777777753
No 80
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=4.5 Score=45.25 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--KELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L--~eeE-e~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q 293 (442)
.++|+.|-..|..++++++++.+.|.+++..+..+...- ...| +..=...+.++..|.+-..+.+.|+.++..+.
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555444433211 1111 11224566788888888888888877776655
No 81
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.81 E-value=41 Score=39.78 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 270 NFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
.+|.++..+++..++++..++.....+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666665555443
No 82
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.68 E-value=4.6 Score=39.84 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEK 238 (442)
Q Consensus 226 E~~L~~eLeeLEk 238 (442)
...|+.++++..+
T Consensus 160 ~~kL~~el~~~~~ 172 (216)
T KOG1962|consen 160 LEKLETELEKKQK 172 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.33 E-value=13 Score=33.39 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..+..++-|...+..++..+++++..+.+||-.+..+.
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554444443
No 84
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.29 E-value=15 Score=33.96 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+-.+.+.|..+|..+-.++..+.+++...+.+...|
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333
No 85
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.25 E-value=17 Score=43.93 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 212 ~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
.+++..++..++.+...+..+++.+..+.+.+..+|..|
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555
No 86
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.14 E-value=16 Score=44.49 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=5.0
Q ss_pred HHHHHHHHhh
Q 013502 150 TVLKRAFEIA 159 (442)
Q Consensus 150 ~~l~~lFdIL 159 (442)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 87
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.13 E-value=13 Score=46.82 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+.|...+..++++.....+.+..++++++.....+
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333
No 88
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.07 E-value=18 Score=39.40 Aligned_cols=8 Identities=50% Similarity=0.517 Sum_probs=5.5
Q ss_pred cCCCCCce
Q 013502 66 STRMDNSF 73 (442)
Q Consensus 66 ~~~~d~s~ 73 (442)
--|||.|.
T Consensus 182 LERMD~s~ 189 (493)
T KOG0804|consen 182 LERMDSST 189 (493)
T ss_pred HhhcCccc
Confidence 35788776
No 89
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=89.97 E-value=13 Score=38.45 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
.|-++-+++.++--.|-.-|+.+..... .++..++.....++++...+....|++++++.+.+..++...+..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~-~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLK-EMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888889888888865433 346666666666667777777777777777777777776555443
No 90
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.46 E-value=21 Score=44.98 Aligned_cols=12 Identities=17% Similarity=0.614 Sum_probs=6.7
Q ss_pred CCce--eeccCCCC
Q 013502 70 DNSF--VVLPKQRP 81 (442)
Q Consensus 70 d~s~--vvl~~~r~ 81 (442)
-+-| .++|.+..
T Consensus 658 ~phFvRCiIPn~~K 671 (1930)
T KOG0161|consen 658 HPHFVRCIIPNEEK 671 (1930)
T ss_pred CCceeEEeccCccc
Confidence 3456 56776643
No 91
>PRK09039 hypothetical protein; Validated
Probab=89.35 E-value=15 Score=38.14 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEA 194 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~ 194 (442)
+..++++++.++.++..
T Consensus 48 i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 48 ISGKDSALDRLNSQIAE 64 (343)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 56667777777666665
No 92
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.31 E-value=24 Score=35.02 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~ 289 (442)
++.++.+.|..|+....++|.........++..=.+-|.+.+..+.....+.+|..-+..++
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666665555555555666666666666555555444444333
No 93
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.26 E-value=15 Score=38.69 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 166 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (442)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~ 245 (442)
|.-...|.|..+...+...+.+ ....|++|.. ++.+-+.+++.-|+-+-.+++.+-.+...+..
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~-------~~~~L~kl~~---------~i~~~lekI~sREk~iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPE-------TKSQLDKLQQ---------DISKTLEKIESREKYINNQLEPLIQEYRSAQD 280 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555544444443 3445555542 34455566677777777777777777777777
Q ss_pred HHHHHHHHHHHHH
Q 013502 246 ELKELELKSKRFK 258 (442)
Q Consensus 246 El~~le~e~~~L~ 258 (442)
++.+++.+.++..
T Consensus 281 ~ls~~~~~y~~~s 293 (359)
T PF10498_consen 281 ELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 7776666555444
No 94
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=89.26 E-value=15 Score=40.56 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
...|-+.|...|+..|++++.+..+++.+.....+|+++ .-....+++-||..+-|-+-+++.++.....+++.||.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666666666777777776666666555444333 33556677888999999999999999999999999985
Q ss_pred c
Q 013502 302 T 302 (442)
Q Consensus 302 t 302 (442)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 3
No 95
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=89.15 E-value=21 Score=34.10 Aligned_cols=82 Identities=22% Similarity=0.363 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhchhc----ccCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQR---LEGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETE 237 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~---Le~e~~----~~~s~e~l~~El~~LE~EE~~----------L~~eLeeLE 237 (442)
..|+..|+.++.+-.+-|..+..-+.. +..... +.....++..-+.+|++|..+ |...|+..-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 357788888888887777777776631 110000 000123344444455555443 555666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013502 238 KQNAEVNAELKELELKSKR 256 (442)
Q Consensus 238 kE~~~l~~El~~le~e~~~ 256 (442)
+..+.|..++..+..+...
T Consensus 95 ~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777766654443
No 96
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=89.13 E-value=20 Score=33.76 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNA--------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 279 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~--------~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~ 279 (442)
...+.++|+..++.....|-++.+... +.=++-..++.+..-+.+.|.+.-.-.+.+++.|..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655544332 11122233333444444555555555555555444333
No 97
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.13 E-value=36 Score=36.69 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
+|..+|..|-.++.+++++...+..+
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~ 173 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQAS 173 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444443333333
No 98
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=89.02 E-value=0.17 Score=33.96 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.1
Q ss_pred cccchHHHHHHHHHhhcCC
Q 013502 144 GFHSTITVLKRAFEIATSQ 162 (442)
Q Consensus 144 ~lss~i~~l~~lFdILSs~ 162 (442)
.+|+|+++...+|||+|++
T Consensus 7 ~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 7 NLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHCCTT--
T ss_pred ccchhheecccccccccCC
Confidence 4899999999999999985
No 99
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.02 E-value=20 Score=37.14 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAI 285 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~-eeEe~~W~e~N~~q~qL~~~~eE~~sl 285 (442)
+|...|..|+++...+..++..|..+.-.++ .+|.+==..+|.+..+...+..+...+
T Consensus 139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~L 197 (310)
T PF09755_consen 139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRL 197 (310)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444444444444332221 111111133455555544444444433
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=88.95 E-value=25 Score=40.23 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 013502 154 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 206 (442)
Q Consensus 154 ~lFdILSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~ 206 (442)
+.|-.-+..+.| .|+-.|-+..+.. +.+++..+.+|||+...-.+.|+++-
T Consensus 389 e~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 389 EDLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444555544 4778888887765 89999999999999998888776553
No 101
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=17 Score=40.54 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~--------------l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~ 283 (442)
.+.+|+.|.+.++++|.....|++. ++.+...+..+++.++.-|.+...+|+.+.-+=+.+|....
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3445666666666666655555544 34445566677788888899999999988877666665544
Q ss_pred H
Q 013502 284 A 284 (442)
Q Consensus 284 s 284 (442)
.
T Consensus 188 ~ 188 (772)
T KOG0999|consen 188 N 188 (772)
T ss_pred H
Confidence 3
No 102
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.56 E-value=31 Score=35.29 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCH-HH---HHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE-AD---FLKEKLKIEEEERKLEAAIEETEK-------QNAE 242 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~-e~---l~~El~~LE~EE~~L~~eLeeLEk-------E~~~ 242 (442)
+..-++.+++|++.++++.+.-+.-|...+.+.. .++. .. ....+..|+.+..+++.++.++.. +...
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~ 246 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPS 246 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHH
Confidence 4556677777777777777776666666654432 1221 11 122334455555555555544431 1122
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 243 VNAELKELELKSKRFKELE-ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 243 l~~El~~le~e~~~L~eeE-e~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+.+++..++.+..+....- ...=...+....++.+++.+.+..+..|+.+...++.++
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433322211100 000124566677777888888888888888888888777
No 103
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=88.39 E-value=18 Score=41.14 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
...+||.|...|..|++..+++...+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444443333
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.36 E-value=29 Score=34.58 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.+.+.+..++-...-.+..+++++...+.+|+.|+
T Consensus 103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 33344444443333334444445555554444444
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.17 E-value=24 Score=39.77 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCC
Q 013502 337 EINAAWGQACLLLHTMCQYFRPK 359 (442)
Q Consensus 337 EINAAwGQ~~LLL~tla~kl~~~ 359 (442)
|..+-+|++-.-|+.+-.++..+
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 55566666666666665555444
No 106
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.03 E-value=32 Score=39.44 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccC-CH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SE-------ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~-s~-------e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
..|+.++.++..+...+..-.++|.....+.. +. ..+..|+++++.-|.+|.+...+||.|.-.|.+++..|
T Consensus 37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 37 LELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554433211000 01 11234555566666777777777777766666665544
Q ss_pred H
Q 013502 251 E 251 (442)
Q Consensus 251 e 251 (442)
+
T Consensus 117 k 117 (717)
T PF09730_consen 117 K 117 (717)
T ss_pred H
Confidence 4
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.01 E-value=39 Score=37.71 Aligned_cols=41 Identities=22% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+++..++.+..++..++..++.+..++..+++.++.+..++
T Consensus 428 e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 428 EELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555555555554444
No 108
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=87.93 E-value=4.3 Score=45.27 Aligned_cols=70 Identities=29% Similarity=0.344 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~ 308 (442)
...||-++|..+++|+.||+++..+.++++ ..+...+-|+..++..++.+|.+++.|+.+|--.-.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk--------------~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELK--------------RLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 345566667777777777776665554443 333344556677888899999999999999987777
Q ss_pred eeee
Q 013502 309 FPIW 312 (442)
Q Consensus 309 F~I~ 312 (442)
..|+
T Consensus 157 LP~s 160 (907)
T KOG2264|consen 157 LPFS 160 (907)
T ss_pred eccc
Confidence 6666
No 109
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.81 E-value=14 Score=30.42 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe 262 (442)
.+||.--..+...|..|+.+.+++.++-..+..+...|.++.+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444455555555555555555444444444444443333
No 110
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.49 E-value=39 Score=35.21 Aligned_cols=167 Identities=13% Similarity=0.214 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhch-------hc--c----------cC---CHHHH-------HHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR--D----------VL---SEADF-------LKEKLKIEEEERKLE 230 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e-------~~--~----------~~---s~e~l-------~~El~~LE~EE~~L~ 230 (442)
.|-++|+....|+|.|..-.+.|... .. . .. ....+ .++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888666655421 00 0 00 01112 233445666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 231 AAIEETEKQNAEVNAELKELELK------------SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e------------~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+.|.+++.+..-+.+.+...+.. .+++-.+=++.+..+..+++++....+|..-+...-++.+...+|
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666565555544321 122222223466777777777777777777777777777777777
Q ss_pred HhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 013502 299 LKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (442)
Q Consensus 299 LrktNV~Nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (442)
|..- ..+| +++..+..|.+|-+=. ..==..|+.+-...-|+..+|.+|
T Consensus 173 LN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KY 222 (319)
T PF09789_consen 173 LNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKY 222 (319)
T ss_pred HHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7431 1111 0112233333332211 122346888888899999999886
No 111
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.49 E-value=7.9 Score=42.16 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe-~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+-++++.++..++++.+.+.+|-+.|+.+...+++.-. .+=.+..+++.+..++++++..+..++...+.+|+-+.
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444444444555555555454444444333332222 22223344455555556666666666666666666433
No 112
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.42 E-value=9.7 Score=37.61 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
+++|...+.++++.++.+.++...+++.++.+..++..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K 186 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK 186 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544444444433
No 113
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.31 E-value=50 Score=39.34 Aligned_cols=62 Identities=29% Similarity=0.308 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl 285 (442)
..+..|..++.+++.++.+..+++++++.........=+.|-.+++.++.++.++++.|..+
T Consensus 411 e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 411 EQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666666666655554444443445556666666666666655543
No 114
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.96 E-value=57 Score=37.42 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013502 279 QEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 279 ~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.+|++.+..++...+..++.++
T Consensus 638 ~~EL~~~~~~l~~l~~si~~lk 659 (717)
T PF10168_consen 638 KKELERMKDQLQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 115
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=86.87 E-value=33 Score=37.77 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCCc
Q 013502 335 WDEINAAWGQACLLLHTMCQYFRPKF 360 (442)
Q Consensus 335 W~EINAAwGQ~~LLL~tla~kl~~~F 360 (442)
=++.-.-.|-.=|+...+++-+.-+|
T Consensus 391 ~~~L~k~V~~~~leaq~~~~slek~~ 416 (622)
T COG5185 391 SDKLTKSVKSRKLEAQGIFKSLEKTL 416 (622)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444455555566655555444333
No 116
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.79 E-value=40 Score=38.53 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
.+..|..+++.+..|...=...-+.|+.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRs 446 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRS 446 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 3446777777777776665555444443
No 117
>PRK11519 tyrosine kinase; Provisional
Probab=86.64 E-value=63 Score=36.65 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..+..+.++.+++.+.+..+..|+...+.++.++=
T Consensus 364 ~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 364 AMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445556666666777777777777666666553
No 118
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=86.61 E-value=25 Score=38.75 Aligned_cols=180 Identities=20% Similarity=0.279 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------chhcc------------cCCHHH------HHHHHHH
Q 013502 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLE----------GEARD------------VLSEAD------FLKEKLK 221 (442)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le----------~e~~~------------~~s~e~------l~~El~~ 221 (442)
+.+=.+.+-+.++.=++.+++|.+++...-+.+. .+... .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 6666677777777777888888888764444332 11100 011111 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
++..-..+...+.+-..-...+...+.++......++++-..+|.....+..+-....+.+..+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222222222222222233466667777777777777777888888888888777777777777777777766655432
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 013502 302 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (442)
Q Consensus 302 tNV---~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (442)
-.+ |-+.|.-..+ .+.++. ..|..+|++=++||.-+=.+.--+.++..
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~ 486 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEE 486 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 221 1112211111 111111 01334689999999988777655554443
No 119
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.61 E-value=33 Score=40.74 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=7.6
Q ss_pred ceeeccCCCCCCCCCCC
Q 013502 72 SFVVLPKQRPQSHGVPP 88 (442)
Q Consensus 72 s~vvl~~~r~~~~g~~~ 88 (442)
-+-++|=.+-++..++|
T Consensus 571 RvTiIPLnKI~s~~~s~ 587 (1174)
T KOG0933|consen 571 RVTIIPLNKIQSFVLSP 587 (1174)
T ss_pred eeEEEechhhhhccCCH
Confidence 33455555443333333
No 120
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.57 E-value=26 Score=38.17 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 283 DAISSKIEVSQAHLE 297 (442)
Q Consensus 283 ~sl~~q~~~~q~qLd 297 (442)
.+...++.-.+.||.
T Consensus 431 ~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 431 GSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 121
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.54 E-value=14 Score=39.80 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 013502 294 AHLELLKR 301 (442)
Q Consensus 294 ~qLdkLrk 301 (442)
.+|+-+.+
T Consensus 119 ~~L~A~~r 126 (420)
T COG4942 119 EQLAALQR 126 (420)
T ss_pred HHHHHHHh
Confidence 34444443
No 122
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.39 E-value=26 Score=34.79 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
+|..+....+.++..|.+++.+++.+..+|.+
T Consensus 65 rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~e 96 (246)
T PF00769_consen 65 RLEEEAEMQEEEKEQLEQELREAEAEIARLEE 96 (246)
T ss_dssp HHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555555444443
No 123
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.37 E-value=26 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.++.|...|...+..+|.+.+.+...+..+..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~ 63 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKE 63 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666655555554
No 124
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.32 E-value=11 Score=34.75 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 170 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEK 238 (442)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~---~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEk 238 (442)
+.+|..-=+..|+.++.++..+........+.|+.+- ...++.+++...+..|+.|...+...|+.+..
T Consensus 66 ~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 66 LEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444454455666666666666665555555554321 12345666666666666666666666666554
No 125
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=86.28 E-value=11 Score=43.38 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.7
Q ss_pred ceecccCCcceE
Q 013502 21 RWVCQNCRHFLC 32 (442)
Q Consensus 21 ~~~Cq~C~~~l~ 32 (442)
.+.+.+-+|||.
T Consensus 295 ~i~l~~~rhPll 306 (771)
T TIGR01069 295 KIILENARHPLL 306 (771)
T ss_pred CEEEccccCcee
Confidence 577777777765
No 126
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.27 E-value=14 Score=42.34 Aligned_cols=13 Identities=23% Similarity=0.181 Sum_probs=10.4
Q ss_pred CceecccCCcceE
Q 013502 20 PRWVCQNCRHFLC 32 (442)
Q Consensus 20 ~~~~Cq~C~~~l~ 32 (442)
+.+...+-+|||.
T Consensus 299 ~~i~l~~~rHPll 311 (782)
T PRK00409 299 GKIDLRQARHPLL 311 (782)
T ss_pred CcEEEcCcCCcee
Confidence 3577889999987
No 127
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.21 E-value=34 Score=33.22 Aligned_cols=140 Identities=13% Similarity=0.155 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH-- 295 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q-- 295 (442)
....++.+.+++.+++++..++.+++.+++...........+..+.........+..+.........+..++...+.+
T Consensus 71 r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 71 RLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554444443333233333333334444444444444444444444444432
Q ss_pred --HHH---H-------hhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcc
Q 013502 296 --LEL---L-------KRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFP 361 (442)
Q Consensus 296 --Ldk---L-------rktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~ 361 (442)
|.. + +..+.....|.|. ....+|+--.-..|.. .-..=+.-.+=-+.||-..+.-.+-+.+.
T Consensus 151 ~~l~~ifpI~~~~~~~~~~~~~~~~~~I~---~~~lp~~~~~~~~~~~-~isaALgyvahlv~lls~yL~v~Lpy~i~ 224 (302)
T PF10186_consen 151 QELSEIFPIEQVSSPRRPSDSSSSEYTIC---GLPLPNSRDFNSLPDE-EISAALGYVAHLVSLLSRYLGVPLPYPIT 224 (302)
T ss_pred HHHHHHhCceeecccccCCCCCCCCeeec---CcccCCCcccccCCHH-HHHHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 222 2 1223336778887 3344676555556552 33444555554444444555556777765
No 128
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=85.96 E-value=27 Score=37.77 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~-~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
+.|+++.+++.++.....--.++..+..- ....+.+.+.+.+.|.|.++|.+|..++-.++-....+-+.+.......+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766665543333333322110 00112233344445555566666655555554443333333333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 259 ELEERYWQEFNNFQFQLIAHQEERDAIS 286 (442)
Q Consensus 259 eeEe~~W~e~N~~q~qL~~~~eE~~sl~ 286 (442)
.++-++..+...++.|-.+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555566666666655555555444443
No 129
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.94 E-value=32 Score=37.42 Aligned_cols=29 Identities=38% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 274 QLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
.|..|++++.+...-++-...+|++|+..
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34557777777777777777778877765
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=85.61 E-value=54 Score=34.91 Aligned_cols=36 Identities=11% Similarity=0.060 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
.+...+.++..++.+.+..+..|+....+++..+-.
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777788888888888888888777776643
No 131
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.53 E-value=71 Score=36.25 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CCH--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q 013502 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSE--ADFLKEKLKIEEEERKLEAAIEETEK-------QNA 241 (442)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~-~s~--e~l~~El~~LE~EE~~L~~eLeeLEk-------E~~ 241 (442)
+=+..-++.|++|+..+.++-+.-+.-|+..+.+..-. ++. .....+..+++.+...+..++.++.. +..
T Consensus 263 ~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~ 342 (726)
T PRK09841 263 AQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYR 342 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 34555677777777777777777777776665542111 111 11122333333333333322222211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 242 ~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
.+++++..++.+..+++.. -......+.++.+++.+.+..+..|....+..+.++-.
T Consensus 343 ~l~~~~~~L~~~~~~l~~~----~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 343 ALLEKRQTLEQERKRLNKR----VSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333332222211 23445556666666777777777777766655555433
No 132
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.51 E-value=36 Score=37.90 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (442)
++.++..+..|.+.|..-+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 44455555555555554444
No 133
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.32 E-value=43 Score=33.54 Aligned_cols=58 Identities=12% Similarity=0.375 Sum_probs=27.7
Q ss_pred ccchHHHHHHHHHhhc-CCCCcCCcc-----hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 145 FHSTITVLKRAFEIAT-SQTQVEQPL-----CLE-CMRVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 145 lss~i~~l~~lFdILS-s~s~IDhPL-----C~E-Ctd~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
++-.....+++|..+| +...+.-|| |.| |+..+-+.++...+....=...|..|...+
T Consensus 87 y~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~sl 151 (243)
T cd07666 87 YFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETL 151 (243)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333455667777765 355566665 333 333444433333333333334444444443
No 134
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.31 E-value=43 Score=34.30 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhc
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELLKRT 302 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~---~q~~~~q~qLdkLrkt 302 (442)
...++....+++.+..++.-|++.++ ++++.+--+|++....+..++.....-.+++. ..++++..-|++-++.
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~K---ek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNK---EKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh
Confidence 33334444444444444444433332 22333444566666666665555544444432 2345566667777776
Q ss_pred ccCC
Q 013502 303 NVLN 306 (442)
Q Consensus 303 NV~N 306 (442)
-+|.
T Consensus 131 ti~s 134 (333)
T KOG1853|consen 131 TIYS 134 (333)
T ss_pred hhhh
Confidence 5553
No 135
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.30 E-value=37 Score=38.96 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
+|-.+++++..+++|...++.|++
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555565555555443
No 136
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.25 E-value=41 Score=34.97 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLE------------------kE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q 274 (442)
+.+.+.++.||+|-..|+.+...|. ++......++..|..++.+..++-.+.-.+...+..+
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567777777777766554 3333444555666666555555555666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 275 LIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
+..++....++-..-+..+.+|...
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7777776666655555555555433
No 137
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.03 E-value=16 Score=34.57 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 227 RKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
..+..+.+.++.+.+++.++++.|+.|...|
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444333
No 138
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.01 E-value=55 Score=35.85 Aligned_cols=7 Identities=43% Similarity=0.264 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 013502 336 DEINAAW 342 (442)
Q Consensus 336 ~EINAAw 342 (442)
.|++||=
T Consensus 421 ke~eaaK 427 (522)
T PF05701_consen 421 KEAEAAK 427 (522)
T ss_pred HHHHHHH
Confidence 3444443
No 139
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=84.88 E-value=33 Score=40.04 Aligned_cols=150 Identities=16% Similarity=0.176 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCCCcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhchhcccCCHHHHHHHH
Q 013502 152 LKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEAY----------EACLQRLEGEARDVLSEADFLKEK 219 (442)
Q Consensus 152 l~~lFdILSs~s~IDhP--LC~ECtd~Lle~Ld~qle~~~~E~d~Y----------~~fL~~Le~e~~~~~s~e~l~~El 219 (442)
|+.+...||..-.+-+| .|.+=.....-.+..=+..+.+|.+.- ...++++..+.......+...+..
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~~q~~e~~ 600 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQEQAKEQR 600 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667766667778 488777766666655555565555543 333333322111000000111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELEE-------------RYWQEFNNFQFQLIAHQEERD 283 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~E---l~~le~e~~~L~eeEe-------------~~W~e~N~~q~qL~~~~eE~~ 283 (442)
+.-+.|+++|.+++.+-|+++...+.+ .+.+++....+.+-|. +-..--.-.+.+..+++.++.
T Consensus 601 ~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~k 680 (988)
T KOG2072|consen 601 QAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERK 680 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 223566667777776665554433333 1222221111111110 111111223557778888888
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 013502 284 AISSKIEVSQAHLELLKR 301 (442)
Q Consensus 284 sl~~q~~~~q~qLdkLrk 301 (442)
.++.++.+.-..+|.+.+
T Consensus 681 Elq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 681 ELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHhhhhHHHH
Confidence 888888888877776655
No 140
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.56 E-value=45 Score=33.13 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+.+-..|.+...+++.+...|..+....+.+...|...=..+-.....+.-....-..|...+..++..++..+.
T Consensus 46 eeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 46 EEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443334444333344444444444444444555555556555555443
No 141
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=84.50 E-value=41 Score=36.46 Aligned_cols=147 Identities=18% Similarity=0.250 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEA-YEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~-Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
+++++.-+ +.-.++|+ |...+++++.-..++..+ .++.+++|++-.+|.+.|.++-.....+. .+...
T Consensus 137 ~~q~esll-e~~~q~da~~qq~~~ele~~d~~~~~d---~ee~kqlEe~ieeL~qsl~kd~~~~~~l~-------~e~n~ 205 (446)
T KOG4438|consen 137 IQQLESLL-ELRKQLDAKYQQALKELERFDEDVEED---EEEVKQLEENIEELNQSLLKDFNQQMSLL-------AEYNK 205 (446)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 33344333 44445555 345555555322221111 22333444444444444444444443333 33333
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCC
Q 013502 257 FKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL-ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVE 334 (442)
Q Consensus 257 L~eeEe-~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL-dkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~ 334 (442)
....+. .+.+..|.+.+....+++...+|..++-++=..| +.|..++ ++||..-+..|+
T Consensus 206 ~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-------------------~~l~k~k~~~~~ 266 (446)
T KOG4438|consen 206 MKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-------------------DLLQKEKSAMVE 266 (446)
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHHH
Confidence 333333 3788889999999999999998888875544332 1222222 234445556677
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 013502 335 WDEINAAWGQACLLLHTMCQ 354 (442)
Q Consensus 335 W~EINAAwGQ~~LLL~tla~ 354 (442)
..|=-+.+|-.+=-+.++-.
T Consensus 267 l~~K~~iL~ekv~~~qti~~ 286 (446)
T KOG4438|consen 267 LQEKAKILEEKVTNLQTIEK 286 (446)
T ss_pred HHHHHHHHHhHhHHHHHHHH
Confidence 77777777776666666554
No 142
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=84.38 E-value=15 Score=42.14 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=24.1
Q ss_pred ceeecccccccchhhhhccHHHHHhhhhhHHhhhhhhhhhh---hH-HHHHHHHhhhcccCCCCC
Q 013502 381 NTYELTLQNLQILRIKRITFHQINALNCPIRLKMTRWKTIQ---SR-RALISKRIGQKLSNTPSV 441 (442)
Q Consensus 381 ~~y~Ly~s~~~~~~~~rfd~~m~~fldc~~q~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~ 441 (442)
.+++|.|- +++.|+-..-+.|.+-....++++. -+ .-.+.+.+.+-|...|.|
T Consensus 694 ~~ldl~G~--------~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~~v~~~L~~~~~V 750 (771)
T TIGR01069 694 LTLDLRGQ--------RSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRKGVQELLKNHPKV 750 (771)
T ss_pred ceEECCCC--------CHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHHHHHHHhcCCcce
Confidence 46777664 4456665444444444333333221 10 122344445555555544
No 143
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.16 E-value=9.3 Score=37.12 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
..++..|+..=..+....-++|.....|++|+.+++.+...++
T Consensus 174 ~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 174 GEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777777777777777777777777766555444
No 144
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.94 E-value=18 Score=29.72 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 227 RKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
..|..|-+.|.+........|+.|..+..
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~ 43 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIK 43 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 145
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=83.41 E-value=45 Score=32.21 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+.|.+++..-......+...+.+++..++.|+
T Consensus 153 k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 153 KSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444445555554443
No 146
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.40 E-value=45 Score=32.68 Aligned_cols=9 Identities=11% Similarity=0.386 Sum_probs=5.0
Q ss_pred hcCCCcc-cc
Q 013502 355 YFRPKFP-YR 363 (442)
Q Consensus 355 kl~~~F~-Yr 363 (442)
.+|-++. |+
T Consensus 163 ~yg~~i~~~~ 172 (251)
T PF11932_consen 163 EYGRTIEVYQ 172 (251)
T ss_pred HhCCceeEEE
Confidence 4566665 65
No 147
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=83.39 E-value=13 Score=40.55 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY-WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~-W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.+.|..++++++++.+.+..+-+.|.+|.++|.+.|... -+--+.++-...+++++++.++.+...++..|+.|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554443311 112222223333444455555555555555554443
No 148
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.38 E-value=45 Score=32.16 Aligned_cols=108 Identities=27% Similarity=0.326 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 186 DDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLK-------IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 186 e~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~-------LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
++-...-..|...|..|+...-++...-.-+.++.. +..+.+.+++++.+-+.+..+++.+|.+++.+..++.
T Consensus 65 dd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 65 DDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred CCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 333344445666666666543222111111122222 3334444555555555555566777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 259 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (442)
Q Consensus 259 eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q 293 (442)
+.....=........++..++.+...++..+..+.
T Consensus 145 ~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 145 RQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444555555555555555555554444443
No 149
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=83.31 E-value=56 Score=41.17 Aligned_cols=27 Identities=7% Similarity=0.152 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
++..+.+++.+..+.+.|..-|+.+..
T Consensus 131 le~~~~ele~l~~~n~~l~~ql~ss~~ 157 (1822)
T KOG4674|consen 131 LERQKAELEALESENKDLNDQLKSSTK 157 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777777666543
No 150
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=83.30 E-value=4.8 Score=43.18 Aligned_cols=51 Identities=8% Similarity=0.187 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
.+.++...++.+++.++ .+++..|++||+.|..++.-+..++.....|..|
T Consensus 410 ~l~~~i~~l~~~i~~~~---~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVS---DSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555554 3567889999999999988777776555554444
No 151
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.29 E-value=40 Score=32.91 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
||.+..-++..|.+-+.....|.+++.-......+. -..-...+.+...+..++....+|++..+.++..|.+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v-------a~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQV-------AARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555554444433322222 2222334455566667777777777777777777776
Q ss_pred cc
Q 013502 302 TN 303 (442)
Q Consensus 302 tN 303 (442)
.+
T Consensus 183 q~ 184 (192)
T PF11180_consen 183 QA 184 (192)
T ss_pred Hh
Confidence 53
No 152
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.25 E-value=22 Score=38.47 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.+...+..++.++..++..++.++..++.+|..|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444555555555566666666667776654
No 153
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.24 E-value=22 Score=30.30 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
....++..+-.+-+.+..+++.+..++-.+.+++..+...
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 3455666777888888999999998888888888877764
No 154
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.13 E-value=16 Score=39.56 Aligned_cols=26 Identities=4% Similarity=0.087 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKI 289 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~ 289 (442)
......++..++.++++++..++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 143 LLTEDREAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444433
No 155
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.13 E-value=1.1e+02 Score=36.29 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
|..+...|.....++.++.+.-..-+.+++++..+|++.-++.-++.........+..+..++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555666666655555555555555555566666677778888888888999988
Q ss_pred c
Q 013502 302 T 302 (442)
Q Consensus 302 t 302 (442)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 8
No 156
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.08 E-value=46 Score=40.63 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIE 193 (442)
Q Consensus 180 ~Ld~qle~~~~E~d 193 (442)
.+..+++.++++..
T Consensus 234 ~~~~~le~l~~~~~ 247 (1353)
T TIGR02680 234 EYRDELERLEALER 247 (1353)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 157
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=82.98 E-value=29 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
...+..|..++.+..+....++.-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888889999988899998888888754
No 158
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.80 E-value=4.8 Score=35.78 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.3
Q ss_pred cCCCceeeeecCCeee
Q 013502 304 VLNDAFPIWHDGEFGT 319 (442)
Q Consensus 304 V~Nd~F~I~hdG~fGT 319 (442)
+|++=|||.+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 6999999988 57765
No 159
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.72 E-value=56 Score=33.73 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=25.0
Q ss_pred CcccchHHHHHHHHHhhcCCCCcCCcchHHHHHH
Q 013502 143 SGFHSTITVLKRAFEIATSQTQVEQPLCLECMRV 176 (442)
Q Consensus 143 ~~lss~i~~l~~lFdILSs~s~IDhPLC~ECtd~ 176 (442)
+-+++.|.-+...=.+.|.-++--..+|.=-...
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~ 86 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLSKE 86 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 4478888888888888888888777788654433
No 160
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.71 E-value=50 Score=32.25 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
...||++-+.|.++...+|+|...|-+++..|+.+...+
T Consensus 76 ~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 76 AKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334555555555555555555555555555555544333
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=82.64 E-value=67 Score=36.12 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 242 ~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
.+.++++.++......+.+=.+-|.+.-.++.+..+...|...-+..+.....+++++.+.
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444444444433333333346778888888888888888887777788888889998887
No 162
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.50 E-value=23 Score=36.15 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=81.2
Q ss_pred cccchHHHHHHHH----HhhcC---CCCcCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhchhccc--C--
Q 013502 144 GFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--L-- 210 (442)
Q Consensus 144 ~lss~i~~l~~lF----dILSs---~s~IDhPLC~ECtd~Lle~Ld~q-le~~-~~E~d~Y~~fL~~Le~e~~~~--~-- 210 (442)
...+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|.-|+...-++ +
T Consensus 94 Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~ 173 (269)
T PF05278_consen 94 VKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRS 173 (269)
T ss_pred EcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 3456778889999 78754 45555567889988899999763 3333 333333445555554321110 0
Q ss_pred CHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 211 SEADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (442)
Q Consensus 211 s~e~l~~------El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~s 284 (442)
--+++.+ .....+.|.+.....|+..+.|.+...+++.+.+++.+.+.+.. .+..-.|.+++.++-.
T Consensus 174 ~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 174 KLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 0011111 11123333333444444444444444444444444444433322 3445557777777777
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013502 285 ISSKIEVSQAHLELLKR 301 (442)
Q Consensus 285 l~~q~~~~q~qLdkLrk 301 (442)
+.-.+.+++...++..-
T Consensus 247 l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 247 LSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777778877777644
No 163
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=82.29 E-value=69 Score=35.42 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.-.....++.++.++.+.+.++...-..|+..|++++.
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555566665553
No 164
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=82.14 E-value=53 Score=32.11 Aligned_cols=44 Identities=30% Similarity=0.433 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
+..+...+|.|-..|.+++..|..+...+..+...+......|.
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 45555667777777888888887777777777777776666663
No 165
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.12 E-value=19 Score=40.71 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=9.9
Q ss_pred eeeecCCcceeec
Q 013502 365 KIIPMGSYPRIMD 377 (442)
Q Consensus 365 kLvPmGS~SkI~~ 377 (442)
..+|.|++|.+..
T Consensus 329 e~~p~s~~S~~n~ 341 (861)
T KOG1899|consen 329 ESFPVSSSSTTNN 341 (861)
T ss_pred ccccccccccccc
Confidence 3688888888764
No 166
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.07 E-value=71 Score=38.51 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~ 249 (442)
+.+++..++.+...+.++++.
T Consensus 683 ~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 167
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.01 E-value=75 Score=33.81 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
.++.++..+..+...+...++.+
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555554443
No 168
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=81.81 E-value=43 Score=40.55 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 013502 189 TRDIEAYEACLQ 200 (442)
Q Consensus 189 ~~E~d~Y~~fL~ 200 (442)
+++...|..-|+
T Consensus 514 ~~~~~~~~eele 525 (1317)
T KOG0612|consen 514 EALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 169
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.75 E-value=18 Score=41.88 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=5.2
Q ss_pred eeeecCCcc
Q 013502 365 KIIPMGSYP 373 (442)
Q Consensus 365 kLvPmGS~S 373 (442)
-|.||-+.|
T Consensus 698 Aly~FeaRs 706 (1118)
T KOG1029|consen 698 ALYPFEARS 706 (1118)
T ss_pred eecccccCC
Confidence 466776444
No 170
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.56 E-value=84 Score=34.46 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
......+..|.....+....++--..+..++..|.
T Consensus 407 a~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~ 441 (522)
T PF05701_consen 407 AAIKTAEERLEAALKEAEAAKASEALALAEIKALS 441 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444443
No 171
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.43 E-value=41 Score=36.99 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=7.0
Q ss_pred hhhccHHHHHhhhhhH
Q 013502 395 IKRITFHQINALNCPI 410 (442)
Q Consensus 395 ~~rfd~~m~~fldc~~ 410 (442)
.+..+..++.+|-.++
T Consensus 306 ~~~~~~~~~~~l~~l~ 321 (514)
T TIGR03319 306 VHGLHPELIKLLGRLK 321 (514)
T ss_pred CCcCCHHHHHHHHHhh
Confidence 3344444444444433
No 172
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=81.22 E-value=31 Score=39.69 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=10.2
Q ss_pred CCcccchHHHHHHHHHhh
Q 013502 142 NSGFHSTITVLKRAFEIA 159 (442)
Q Consensus 142 ~~~lss~i~~l~~lFdIL 159 (442)
-++||..+..+..+...+
T Consensus 388 lStfS~~m~~~~~Il~~~ 405 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA 405 (782)
T ss_pred hhHHHHHHHHHHHHHHhC
Confidence 355666666655555544
No 173
>PRK06798 fliD flagellar capping protein; Validated
Probab=81.22 E-value=6.3 Score=42.26 Aligned_cols=54 Identities=7% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
..+.++.+...++.+++.++ .+++..|++||+.|+.+...+..++.+...+.++
T Consensus 380 r~~~l~~~i~~l~~~~~~~e---~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDID---TQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655555 3567788999999999988877777555444433
No 174
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.79 E-value=43 Score=30.23 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
|+.+...++.++..++.....+..++.
T Consensus 78 L~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 78 LKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443333333333333
No 175
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=80.72 E-value=35 Score=29.15 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.++..++.+++....-+.....+ ...+...+.+|+.|..+..++.-++++....+..++..|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~------~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKE------LTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555555444444433221 12233344556666666666666666666666666665554
No 176
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=80.40 E-value=47 Score=33.51 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.0
Q ss_pred HHHHHHHhhcC
Q 013502 151 VLKRAFEIATS 161 (442)
Q Consensus 151 ~l~~lFdILSs 161 (442)
...+.|+-|++
T Consensus 74 LA~kf~eeLrg 84 (290)
T COG4026 74 LAEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHHH
Confidence 34567777765
No 177
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.39 E-value=68 Score=37.02 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=13.6
Q ss_pred CCCChhh----HHHHHH--HHHHHHHHH
Q 013502 331 IPVEWDE----INAAWG--QACLLLHTM 352 (442)
Q Consensus 331 ~~V~W~E----INAAwG--Q~~LLL~tl 352 (442)
..-.|+- .|--+| |+.|=...+
T Consensus 656 ~~tawereE~~l~~rL~dSQtllr~~v~ 683 (961)
T KOG4673|consen 656 AATAWEREERSLNERLSDSQTLLRINVL 683 (961)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4556765 777888 766544433
No 178
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=80.36 E-value=36 Score=30.86 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
.+.|+.++..+.-+++.++.-|+.++
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777776666554
No 179
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.35 E-value=1.3e+02 Score=36.09 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 013502 294 AHLELLK 300 (442)
Q Consensus 294 ~qLdkLr 300 (442)
.++..|+
T Consensus 551 kqI~~Lk 557 (1195)
T KOG4643|consen 551 KQIQSLK 557 (1195)
T ss_pred HHHHHHH
Confidence 3333333
No 180
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.24 E-value=32 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.403 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.|..++++|+.+...+..+...|+.+..+|.
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 181
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.17 E-value=52 Score=36.96 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
++.|+.+++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666655554
No 182
>PRK11519 tyrosine kinase; Provisional
Probab=80.00 E-value=29 Score=39.25 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
+...++.|++|+..+.++-+.-+.-|+..+.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~ 295 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ 295 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666766666666665555555544
No 183
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.90 E-value=67 Score=34.18 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
...+.|++|+..++.+.+.-+.-|....
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777766666666655555544
No 184
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.81 E-value=59 Score=37.76 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+.+|-+++...+.+-+++..+..++ .+.|..+++.+=++-...+-.+++.|.+.+.|...|..-+..--+++.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq~---~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQQ---FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 3444444444444444433332222 2223344444444566777788888888888888777766666666666654
No 185
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.70 E-value=1.1e+02 Score=36.16 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=7.6
Q ss_pred eccccCCCCC
Q 013502 320 INNFRLGRLP 329 (442)
Q Consensus 320 INGlRLGrlp 329 (442)
||.++|-+-.
T Consensus 563 i~ql~l~~~~ 572 (980)
T KOG0980|consen 563 INQLELDSSA 572 (980)
T ss_pred HHHhhccccc
Confidence 8888888653
No 186
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.67 E-value=1.1e+02 Score=34.07 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=12.6
Q ss_pred hhhhccHHHHHhhhhhHHhhh
Q 013502 394 RIKRITFHQINALNCPIRLKM 414 (442)
Q Consensus 394 ~~~rfd~~m~~fldc~~q~~~ 414 (442)
..+.|+..|-..=..|++|+-
T Consensus 527 e~~a~~~E~eklE~el~~lnL 547 (622)
T COG5185 527 ELVAQRIEIEKLEKELNDLNL 547 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 345566666666666666653
No 187
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.58 E-value=47 Score=33.84 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
+.+..++.+|..|..+|+.-..|+++..+.+..|+
T Consensus 183 ~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 183 QQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554444444444
No 188
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=79.48 E-value=73 Score=36.37 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 283 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~ 283 (442)
++.......+++..|..+...+.+++..+..+...+.++-++.|+.++.++.+|.+......
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~ 293 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLV 293 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666666666666666667777777777777888888887666665554444
No 189
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.45 E-value=17 Score=38.67 Aligned_cols=87 Identities=16% Similarity=0.306 Sum_probs=45.2
Q ss_pred CCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 162 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 241 (442)
Q Consensus 162 ~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~ 241 (442)
.|.+.--+...-....++.|+.++..+..+.......+.++++.........+..+.+.++.+....+.+++++++.++.
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433324445556777777777777777777777766642211111223333444455555555555555555555
Q ss_pred HHHHHHH
Q 013502 242 EVNAELK 248 (442)
Q Consensus 242 ~l~~El~ 248 (442)
++.++++
T Consensus 400 ~l~~~l~ 406 (451)
T PF03961_consen 400 ELKEELE 406 (451)
T ss_pred HHHHHHH
Confidence 4444444
No 190
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=79.36 E-value=66 Score=37.77 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~ 242 (442)
.|.+.+..++.++|+++..
T Consensus 141 telE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 141 IEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHhhHHHHHHHHHHHhh
Confidence 3333334444444444333
No 191
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.27 E-value=53 Score=39.10 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013502 182 DKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
...+..++.+.+.|..-.+++.+
T Consensus 201 ~~~l~~L~~~~~~l~kdVE~~re 223 (1072)
T KOG0979|consen 201 TEKLNRLEDEIDKLEKDVERVRE 223 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888766666654
No 192
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=79.25 E-value=98 Score=34.12 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 258 KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (442)
Q Consensus 258 ~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q 295 (442)
+-.|.+|..-.-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 488 e~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 488 ETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777778888888776654433
No 193
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.19 E-value=88 Score=37.98 Aligned_cols=19 Identities=47% Similarity=0.795 Sum_probs=12.9
Q ss_pred eeeccc--cCCCCCCCCCChh
Q 013502 318 GTINNF--RLGRLPKIPVEWD 336 (442)
Q Consensus 318 GTINGl--RLGrlp~~~V~W~ 336 (442)
|-|+|| |||-|..++..++
T Consensus 613 G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred CCCCccccccccccccchHHH
Confidence 557888 8887766555554
No 194
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.98 E-value=32 Score=39.02 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
-..+..++.+++.++.++..++.+
T Consensus 306 a~~~l~~~~~l~~ql~~l~~~~~~ 329 (726)
T PRK09841 306 AKAVLEQIVNVDNQLNELTFREAE 329 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666555544433
No 195
>PRK11281 hypothetical protein; Provisional
Probab=78.76 E-value=59 Score=39.20 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
.+.|+++++++.++.....+-|+++++
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 345666666666666666666666654
No 196
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=78.12 E-value=58 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
..|+.+...+..++..++.++..+..+...+
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L 85 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENL 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 197
>PRK12704 phosphodiesterase; Provisional
Probab=78.04 E-value=1.2e+02 Score=33.59 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 013502 235 ETEKQNAEVN 244 (442)
Q Consensus 235 eLEkE~~~l~ 244 (442)
.|++...+|.
T Consensus 104 ~Lekke~eL~ 113 (520)
T PRK12704 104 LLEKREEELE 113 (520)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 198
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=77.99 E-value=36 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFN 269 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe--~~W~e~N 269 (442)
.+-++.||+|..-|.+.|+.+|++++=...+|..++.+...|-.... .||.+..
T Consensus 6 lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~ 61 (84)
T PF11414_consen 6 LKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLH 61 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCcccccc
Confidence 45677899999999999999999999999999999998888877766 5666553
No 199
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=77.47 E-value=11 Score=37.57 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV 304 (442)
+.-|+....++++|+.....++...+.++++|++.||
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666677777777665
No 200
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=77.46 E-value=68 Score=30.65 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
...+..++.+|+++..+|..++.+++.+.+.++..++.. .+..-..+++|.+-++.+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666666666666666666655544443333211 1122233455555555555555555543
No 201
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.35 E-value=41 Score=28.79 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
|+...+.+..+++.++++...+..++.+++.+.
T Consensus 68 Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 68 LKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555443
No 202
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=77.21 E-value=1.2e+02 Score=33.37 Aligned_cols=29 Identities=10% Similarity=0.324 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
++.+.+...+++..+++-.+++..+.+.|
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 203
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=77.17 E-value=39 Score=29.24 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
|+...+.++..++.++++...+..++.+++.+
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555554443
No 204
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.70 E-value=42 Score=32.09 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
|...+.+++++|+++.+++.+++..+
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665543
No 205
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=76.59 E-value=25 Score=29.18 Aligned_cols=35 Identities=40% Similarity=0.419 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..|+...+.+..+++.++++...+..++.+++.+.
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777777777666543
No 206
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=75.98 E-value=9.7 Score=41.55 Aligned_cols=49 Identities=24% Similarity=0.456 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 237 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 237 EkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
.++...++.+++.+. ++++..|++||..||.+...+...+.....|..+
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~ 476 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQ 476 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555544 4678999999999999987766555444443333
No 207
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.89 E-value=1e+02 Score=34.01 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~ 263 (442)
|.+..+.|++...+|.+...+++.+.+.+++.+++
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e 126 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE 126 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333443333343333344443333
No 208
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.85 E-value=1e+02 Score=34.92 Aligned_cols=23 Identities=9% Similarity=-0.070 Sum_probs=12.4
Q ss_pred chhhhhccHHHHHhhhhhHHhhh
Q 013502 392 ILRIKRITFHQINALNCPIRLKM 414 (442)
Q Consensus 392 ~~~~~rfd~~m~~fldc~~q~~~ 414 (442)
|-....=--+|++|+++...=.+
T Consensus 337 ipEd~es~E~m~~f~~~a~~~~e 359 (617)
T PF15070_consen 337 IPEDLESREAMVEFFNSALAQAE 359 (617)
T ss_pred cccccccHHHHHHHHHHHHhhHH
Confidence 33344444577777775444333
No 209
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=75.73 E-value=16 Score=38.82 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
++.++|.++++++..+.+++++.+..++.... ........-..+..+......+.++...+..++...+.+++++
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444443211 1111112223444555555566666666666666666667766
No 210
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.68 E-value=93 Score=34.72 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl 285 (442)
.+|.-+|+.+...+.+++..+-.|.+++.+-|.+....-.++..++++.-..|.+..-.+.+.++|+..+
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566667777777777777666666655554443333222232222222233334444455556666654
No 211
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=75.42 E-value=34 Score=41.37 Aligned_cols=26 Identities=4% Similarity=-0.217 Sum_probs=22.7
Q ss_pred hhhhccHHHHHhhhhhHHhhhhhhhh
Q 013502 394 RIKRITFHQINALNCPIRLKMTRWKT 419 (442)
Q Consensus 394 ~~~rfd~~m~~fldc~~q~~~~~~~~ 419 (442)
-...|++.+.+..+.++|...+.-.+
T Consensus 668 ~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 668 LEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999998776
No 212
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.38 E-value=33 Score=32.82 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
.++....+|.++++.++.+.+++.+++....
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666665555553
No 213
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.94 E-value=1.5e+02 Score=33.45 Aligned_cols=31 Identities=19% Similarity=0.037 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 270 NFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
..+.++.+++.+.+..+..|+....+++.++
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666666655555554
No 214
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.77 E-value=81 Score=30.16 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQ 274 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~-eeEe~~W~e~N~~q~q 274 (442)
..++.+...|..++++|+.+..++....+.++....... .+++.+=.+...++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777776666554433 3333444444444433
No 215
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=74.56 E-value=71 Score=29.76 Aligned_cols=84 Identities=18% Similarity=0.279 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc-----cc--------------CC--------------HHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DV--------------LS--------------EADFLKEKLKI 222 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~-----~~--------------~s--------------~e~l~~El~~L 222 (442)
..++.|+.++..++.-+..+..+++-|+.-.. +. .. +.++.+...-|
T Consensus 20 ~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~l 99 (145)
T COG1730 20 SQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEFL 99 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHHH
Confidence 45667777777777777777777766642110 00 00 11223333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
++..++|.+.++.++.+.+++.+.+..++.+..++.+
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666665555555555544433
No 216
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.56 E-value=1.4e+02 Score=32.91 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 013502 232 AIEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 308 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~---e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~ 308 (442)
.++++-...+++.+++..++. +.+.++++.+++++.|..+-.+|.... .....+ ....-...|+..+.-+..
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R---~~~a~~--l~~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR---RKAAER--LAKRVEQELKALAMEKAE 397 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHhCCCCCcE
Confidence 445555555555555555443 445555666666666666655554332 222222 222334556777788889
Q ss_pred eeeee
Q 013502 309 FPIWH 313 (442)
Q Consensus 309 F~I~h 313 (442)
|+|..
T Consensus 398 f~v~~ 402 (563)
T TIGR00634 398 FTVEI 402 (563)
T ss_pred EEEEE
Confidence 98864
No 217
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=74.55 E-value=99 Score=39.16 Aligned_cols=21 Identities=19% Similarity=0.441 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
.+..+++....+++....-+.
T Consensus 63 ~l~q~~~~~~~q~~~~~~e~s 83 (1822)
T KOG4674|consen 63 RLEQRLSDLSRQAKLLRNELS 83 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555444433
No 218
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=74.55 E-value=45 Score=33.19 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~ 200 (442)
++.+++.++.+...-..-++
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~ 97 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTK 97 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433333
No 219
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.42 E-value=1.6e+02 Score=33.37 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=12.9
Q ss_pred CCcchHHHHHHHHHHHHH
Q 013502 166 EQPLCLECMRVLSDKLDK 183 (442)
Q Consensus 166 DhPLC~ECtd~Lle~Ld~ 183 (442)
..|--+||-.+|.+..+-
T Consensus 553 SsP~~~E~~~lL~~a~~v 570 (741)
T KOG4460|consen 553 SAPPPEECLQLLSRATQV 570 (741)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 345689999998875543
No 220
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.32 E-value=1.1e+02 Score=34.60 Aligned_cols=34 Identities=9% Similarity=0.116 Sum_probs=16.5
Q ss_pred CCCCCCC-ChhhHHHHHHHHH-----HHHHHHHhhcCCCc
Q 013502 327 RLPKIPV-EWDEINAAWGQAC-----LLLHTMCQYFRPKF 360 (442)
Q Consensus 327 rlp~~~V-~W~EINAAwGQ~~-----LLL~tla~kl~~~F 360 (442)
..|..|+ ++.=.+.+.|-++ +.+..+...+.-.|
T Consensus 420 ~~P~~P~~P~~~~~l~~~~~~gl~lg~~~a~l~e~~d~~i 459 (754)
T TIGR01005 420 SVPSEPYFPKKGPIVGLAAVLGLLLGAIFALLRELFSGRA 459 (754)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3555565 4455566665433 23334444444444
No 221
>PRK07737 fliD flagellar capping protein; Validated
Probab=74.24 E-value=13 Score=40.43 Aligned_cols=51 Identities=16% Similarity=0.396 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
.|.++...++.++..++. +++..|++||+.|+.++.-+..++.....|..+
T Consensus 445 ~l~~~i~~l~~~i~~~~~---rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQD---RLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666664 567778999999999988777666555444333
No 222
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.16 E-value=1.2e+02 Score=31.72 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=8.1
Q ss_pred cCCcchHHHHHHHH
Q 013502 165 VEQPLCLECMRVLS 178 (442)
Q Consensus 165 IDhPLC~ECtd~Ll 178 (442)
=.|-+|..|.+.+.
T Consensus 26 CGH~~C~sCv~~l~ 39 (309)
T TIGR00570 26 CGHTLCESCVDLLF 39 (309)
T ss_pred CCCcccHHHHHHHh
Confidence 45666666666653
No 223
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.01 E-value=2e+02 Score=34.40 Aligned_cols=18 Identities=28% Similarity=0.253 Sum_probs=9.7
Q ss_pred cCCCCCcccccccccccC
Q 013502 50 STMHGSSIHASNSVLGST 67 (442)
Q Consensus 50 ~~~~~s~~~~~~s~~~~~ 67 (442)
|++..|++.-+++++|..
T Consensus 103 ss~~tSla~Ss~kllg~~ 120 (1243)
T KOG0971|consen 103 SSPGTSLAASSEKLLGRR 120 (1243)
T ss_pred CCCCCChhhhhhhhhccc
Confidence 455555555555555544
No 224
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.93 E-value=1.8e+02 Score=33.87 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 013502 229 LEAAIEET 236 (442)
Q Consensus 229 L~~eLeeL 236 (442)
|..+++.|
T Consensus 341 Lqsdve~L 348 (775)
T PF10174_consen 341 LQSDVEAL 348 (775)
T ss_pred HHHhHHHH
Confidence 33333333
No 225
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.67 E-value=1.3e+02 Score=34.91 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+++.++-.|...+.|.-+|+..+...+.+|+
T Consensus 135 ~~~~l~~~l~~~eken~~Lkye~~~~~kele 165 (769)
T PF05911_consen 135 EIEDLMARLESTEKENSSLKYELHVLSKELE 165 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444444444443
No 226
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=73.64 E-value=1.1e+02 Score=36.00 Aligned_cols=57 Identities=23% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 013502 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 257 L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~h 313 (442)
+-..|+.|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|....
T Consensus 993 ~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d 1049 (1424)
T KOG4572|consen 993 FARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALD 1049 (1424)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhcc
Confidence 344555666777777778888888888888888877776666666666666665443
No 227
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=73.28 E-value=46 Score=27.43 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..|++++..+.....+...+.+++.....+++.|..
T Consensus 28 ~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 28 SSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777766666543
No 228
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.05 E-value=1e+02 Score=34.54 Aligned_cols=105 Identities=16% Similarity=0.276 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeeeec
Q 013502 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWHD 314 (442)
Q Consensus 242 ~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV-------~Nd~F~I~hd 314 (442)
.+...++.++......+..-.++-...+.+..+-.+.++.+..+..++.-.... +.|.|+ +...|+++|.
T Consensus 379 ~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~---mek~nLPGlPe~~l~l~~~~~~~ 455 (570)
T COG4477 379 ELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY---MEKSNLPGLPETFLSLFFTAGHE 455 (570)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCCCCcHHHHHHHHhhhhH
Confidence 445555555555555555555666666666666555555555444444443333 345554 3355666664
Q ss_pred CCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 013502 315 GEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 355 (442)
Q Consensus 315 G~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~k 355 (442)
=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 456 i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 456 IQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1122 3444 5889999999999999888877654
No 229
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=72.77 E-value=12 Score=42.40 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
..+.++++...++.++++++ .+++..|++||+.|..++..+..++.....|..+
T Consensus 601 r~~~l~~~i~~l~~~i~~~e---~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~ 654 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYE---KKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNF 654 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666655 4678889999999999988877666555444443
No 230
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=72.69 E-value=38 Score=36.78 Aligned_cols=88 Identities=20% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
..+...++.+..|...|..+|.+-+++-.. ....+.+|....++|-.+|...|..--..++.+...+.+-+ .-++
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e--k~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEse---ssle 323 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQE--KLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESE---SSLE 323 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHH
Q ss_pred HHHHHHHHHHHHH
Q 013502 259 ELEERYWQEFNNF 271 (442)
Q Consensus 259 eeEe~~W~e~N~~ 271 (442)
-.|++|+.++-.+
T Consensus 324 mdeery~Ne~~~~ 336 (552)
T KOG2129|consen 324 MDEERYLNEFVDF 336 (552)
T ss_pred HHHHHHHhhhhcc
No 231
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=72.68 E-value=68 Score=32.85 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013502 279 QEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 279 ~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+.+.+.+++++..++.+|+.++
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~ 178 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAK 178 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444
No 232
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=72.52 E-value=1.5e+02 Score=32.15 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 263 ~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
..-++.-.+..+|.+.+.|...+..++.....-||.-
T Consensus 353 aLrkerd~L~keLeekkreleql~~q~~v~~saLdtC 389 (442)
T PF06637_consen 353 ALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTC 389 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4445556666666666666666666666666666643
No 233
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=72.33 E-value=28 Score=30.33 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
|=.+|-+++..+-+...+|+.+|..+.....+....+ +.+.+|+.++..=-.++++. .+..+..+.|..+++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~~~K----~Rc~yL~~KL~HIK~ 94 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQEKK----KRCEYLHNKLSHIKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHHHHH----HHHHHHHHHHHHHHH
Confidence 3455667777777777777778777777777777777 88899998863223344333 344555555555543
No 234
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=72.31 E-value=14 Score=37.96 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcc--cc
Q 013502 341 AWGQACLLLHTMCQYFRPKFP--YR 363 (442)
Q Consensus 341 AwGQ~~LLL~tla~kl~~~F~--Yr 363 (442)
-.|.++| .....-|+|+ |. ||
T Consensus 310 l~GD~ll-aaa~isY~G~-f~~~~R 332 (344)
T PF12777_consen 310 LVGDSLL-AAAFISYLGP-FTPEYR 332 (344)
T ss_dssp HHHHHHH-HHHHHHCCCC-TSHHHH
T ss_pred cHHHHHH-HHHHHHHcCC-CCHHHH
Confidence 3454444 4444446764 54 55
No 235
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=72.19 E-value=25 Score=33.02 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
++.+++.+|++++++|.++.+.+++.++++.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555444433
No 236
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.94 E-value=2.3e+02 Score=34.96 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=6.2
Q ss_pred chHHHHHHHHHhh
Q 013502 147 STITVLKRAFEIA 159 (442)
Q Consensus 147 s~i~~l~~lFdIL 159 (442)
.++..|.++=.||
T Consensus 1522 e~v~sL~nVd~IL 1534 (1758)
T KOG0994|consen 1522 ERVASLPNVDAIL 1534 (1758)
T ss_pred HHHHhcccHHHHH
Confidence 3444455554555
No 237
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.91 E-value=99 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
..|.-|+..|--+-.-|...|+++|....++..+++
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444444555555666666666666555554
No 238
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.83 E-value=54 Score=26.80 Aligned_cols=34 Identities=26% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+...+-.++...-.+...+....+....+|+.++
T Consensus 34 ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 34 ERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445555555555555555555443
No 239
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.82 E-value=1.4e+02 Score=32.94 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCC
Q 013502 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGE 316 (442)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk-tNV~Nd~F~I~hdG~ 316 (442)
++.+..-++.+++..+.|+..+..-.+||+| .+-+=-+||.-|...
T Consensus 345 ~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss 391 (575)
T KOG4403|consen 345 HEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS 391 (575)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc
Confidence 3445556677888888999999999999975 455667888888644
No 240
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.76 E-value=58 Score=32.91 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=14.0
Q ss_pred eeecCCeeeeccccCCCCC
Q 013502 311 IWHDGEFGTINNFRLGRLP 329 (442)
Q Consensus 311 I~hdG~fGTINGlRLGrlp 329 (442)
|-+.|+|-||||-|+ ..|
T Consensus 169 Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 169 IRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred EEecCCeEEECCeec-CCC
Confidence 455689999999999 544
No 241
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.54 E-value=1.4e+02 Score=35.15 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=6.0
Q ss_pred CCCCcccceEE
Q 013502 102 SGKAMDESFVV 112 (442)
Q Consensus 102 ~~~~~~eSfV~ 112 (442)
.++.|.-|||+
T Consensus 125 ~p~~m~~s~v~ 135 (1118)
T KOG1029|consen 125 APRRMSSSPVV 135 (1118)
T ss_pred cccccCCCccC
Confidence 34455556665
No 242
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.46 E-value=28 Score=28.03 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
.+|+.+....-..+...|.+.|+...++..+|..|+.+.+.
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666666666666666666655433
No 243
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=71.43 E-value=2.1e+02 Score=33.42 Aligned_cols=32 Identities=38% Similarity=0.429 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
.+.|...|...|+.+|||...|.-|+.-+.+|
T Consensus 132 ~e~~~~~l~~~l~~~eken~~Lkye~~~~~ke 163 (769)
T PF05911_consen 132 AEAEIEDLMARLESTEKENSSLKYELHVLSKE 163 (769)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555554444444443
No 244
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=71.42 E-value=69 Score=27.88 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l---~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
+....+++.+...+..|..-+..... ..++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~---~g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVG---AGTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443332221 12233332 2223446666777777788888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 013502 256 RFKELEERYWQEFNNF 271 (442)
Q Consensus 256 ~L~eeEe~~W~e~N~~ 271 (442)
.++.+.++...++..-
T Consensus 107 ~lekL~ek~~~~~~~~ 122 (141)
T TIGR02473 107 ALEKLKEKKQKEYRAE 122 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777666655443
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.22 E-value=86 Score=28.89 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
+..+...|..++.+++++...+..++..+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444443
No 246
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=70.97 E-value=74 Score=32.88 Aligned_cols=31 Identities=10% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+..+|..-+-....++.|+..+..++++|..
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leq 116 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQ 116 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666777777777666653
No 247
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=70.93 E-value=1.9e+02 Score=32.73 Aligned_cols=65 Identities=25% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELEL-------KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~-------e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
+.++..+.++++.|++++.+.+.++..... +..+-++...---++|...+.++.++|++.+..+.
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~ 484 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKD 484 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888877776666554332 22222222223446667777777777765554433
No 248
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=70.85 E-value=1.3e+02 Score=30.93 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 278 HQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 278 ~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+.+.+.++..||+.-..|++++-+
T Consensus 140 L~eKlK~l~eQye~rE~~~~~~~k 163 (309)
T PF09728_consen 140 LREKLKSLIEQYELREEHFEKLLK 163 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666677766666666655
No 249
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=70.38 E-value=80 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 275 LIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~q~qL 296 (442)
+..+.++++.|+.|.+....+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444443
No 250
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.33 E-value=67 Score=28.54 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
+++..+-+..+|+.+|++.+.+...+.+++.
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 251
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=70.22 E-value=98 Score=29.14 Aligned_cols=54 Identities=26% Similarity=0.457 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q 274 (442)
.++.|.+.|...++.|+.+...|...+..+.....++++.|.+.-++|+.+...
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 455666667777777777777666666655556666776666665666666544
No 252
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=70.10 E-value=1.6e+02 Score=31.98 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 243 VNAELKELELKSKRFKELEERYWQEFNNFQF 273 (442)
Q Consensus 243 l~~El~~le~e~~~L~eeEe~~W~e~N~~q~ 273 (442)
+.+++...+.+..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5677778888888999999999987777554
No 253
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.95 E-value=1.3e+02 Score=30.63 Aligned_cols=27 Identities=7% Similarity=0.337 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
+..+.....+.|..++.+.+.|+..|+
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 254
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=69.81 E-value=19 Score=30.42 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=7.4
Q ss_pred HHHHHHHHHHH
Q 013502 263 RYWQEFNNFQF 273 (442)
Q Consensus 263 ~~W~e~N~~q~ 273 (442)
+..++||+++-
T Consensus 43 ~lLheYNeiKD 53 (83)
T PF07061_consen 43 KLLHEYNEIKD 53 (83)
T ss_pred HHHHHHhHHHH
Confidence 45677887753
No 255
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=69.73 E-value=1.9e+02 Score=34.30 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCcCCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 013502 149 ITVLKRAFEIATSQTQVEQPLCLECMRVL-----SDKLDKEVDDVTRDIEAYEA 197 (442)
Q Consensus 149 i~~l~~lFdILSs~s~IDhPLC~ECtd~L-----le~Ld~qle~~~~E~d~Y~~ 197 (442)
-+++.+.-. ||++-+.=-|+=..|+..= ++.+-+.+++..++.++...
T Consensus 228 q~vl~ev~Q-Lss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns 280 (1265)
T KOG0976|consen 228 QKVLKEVMQ-LSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNS 280 (1265)
T ss_pred HHHHHHHHH-HHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555433 4666667778888997543 33333444444444444433
No 256
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=69.73 E-value=1.9e+02 Score=32.46 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEAC 198 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~f 198 (442)
..+-+.++.=++..++|..++..-
T Consensus 284 ~~I~e~ie~lYd~lE~EveA~~~V 307 (570)
T COG4477 284 GLIQEKIESLYDLLEREVEAKNVV 307 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667777776543
No 257
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=69.61 E-value=37 Score=28.73 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~ 268 (442)
..+|.+++.+|...+..|-..+..++.|...|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 446788888888888888888888888877776544 455555
No 258
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.49 E-value=7.3 Score=43.90 Aligned_cols=124 Identities=23% Similarity=0.290 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKL----KIEEEERKLEAAIEETEKQNAEVNAEL 247 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l---~~El~----~LE~EE~~L~~eLeeLEkE~~~l~~El 247 (442)
..++..|+++..-+.+||+.|..-|+.+..+.......... .+++. .+.....++...|++++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44667788888888999999998888876543211001000 00111 112222223333444444333222222
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 248 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 248 ~~le~e~~~L~eeE---e----~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
..++.+...+.+.. . .+=..++.++.+...++.+...+..++.....+|++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222221111 1 123455667777777777777777777766666666
No 259
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=69.39 E-value=38 Score=38.54 Aligned_cols=42 Identities=29% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER 263 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~ 263 (442)
|.+++..+...|+++.+++.+-.+|+.++..+.+.+-++...
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g 142 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGG 142 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555566666666666666666666666666655555444443
No 260
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.36 E-value=1.4e+02 Score=34.01 Aligned_cols=140 Identities=14% Similarity=0.246 Sum_probs=76.2
Q ss_pred HHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhchhcccCCHHHHHHHHHHHHHHHHHHHH
Q 013502 153 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ-RLEGEARDVLSEADFLKEKLKIEEEERKLEA 231 (442)
Q Consensus 153 ~~lFdILSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~-~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~ 231 (442)
.++-.||+..+..|+ +|...|-. +-.-+++...+- .+-|. .++... .-..+++.+|.+++.....+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 577778999998886 55555433 333333332221 11111 111110 00235567777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc-ccCCC
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ---EERDAISSKIEVSQAHLELLKRT-NVLND 307 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~---eE~~sl~~q~~~~q~qLdkLrkt-NV~Nd 307 (442)
.++.+..-.+.+..++.........+-+.= +.++.+....+ +=..+....|...+..++.|..+ -|=++
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t~dli~~t-------~~l~~e~~~le~r~kii~~Fl~~fqLs~~E~~~L~~~g~i~e~ 158 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATTQDLIQKT-------ETLKEEAAQLELRKKIINAFLDNFQLSSEELDLLTESGPIDED 158 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHhcCCcchHH
Confidence 777777777777777665555554443333 33333322222 22334455667777888888884 33334
Q ss_pred ce
Q 013502 308 AF 309 (442)
Q Consensus 308 ~F 309 (442)
.|
T Consensus 159 FF 160 (655)
T KOG3758|consen 159 FF 160 (655)
T ss_pred HH
Confidence 44
No 261
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.28 E-value=62 Score=26.46 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~ 291 (442)
.|...+..+...+...+.+.+.|..+-..+-+.....-.+...+.+|.+.+..+++.
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444555555555444443
No 262
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.62 E-value=67 Score=27.59 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
-++.....+..+++.++++...+.+++..++...
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555433
No 263
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.60 E-value=38 Score=31.80 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
.+++.++...+.+.+.++.|.+..
T Consensus 164 ~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 164 EKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 264
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=68.48 E-value=34 Score=33.63 Aligned_cols=48 Identities=10% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 152 LKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 152 l~~lFdILSs~s~IDhPL--C~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
+....+-|.+-..|++-- =+|=|+...+ ++.+++..+.+.+.|...|+
T Consensus 107 ~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~ 156 (262)
T PF14257_consen 107 FDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLE 156 (262)
T ss_pred HHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444444444433444322 2344454444 55566666666666666655
No 265
>PRK08724 fliD flagellar capping protein; Validated
Probab=68.32 E-value=25 Score=40.01 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 234 eeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
+.|.++...++.+++.++ .+++..|++||+.|+.++..+..++....+|.+
T Consensus 620 ~sL~~~i~~l~dqi~~Le---~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~s 670 (673)
T PRK08724 620 KSLREQNYRLNDDQVALD---RRMESLEKRTHAKFAAMQDATGKMQGQLGGMMN 670 (673)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666665 356788999999999998887766655554443
No 266
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=68.06 E-value=20 Score=30.68 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 280 EERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
+|..++..++.....+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 555566666666666677776655
No 267
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.92 E-value=1.9e+02 Score=31.69 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.7
Q ss_pred HHHHHHhhcc
Q 013502 294 AHLELLKRTN 303 (442)
Q Consensus 294 ~qLdkLrktN 303 (442)
..+.+||.-|
T Consensus 410 qevkrLrq~n 419 (502)
T KOG0982|consen 410 QEVKRLRQPN 419 (502)
T ss_pred HHHHHhcccc
Confidence 4466666555
No 268
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=67.91 E-value=1.4e+02 Score=29.99 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 262 ERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 262 e~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
..|-......+.....++.+....+..|..+...|+.+.
T Consensus 180 ~~~~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 180 AKFNQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555566666666666653
No 269
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=67.75 E-value=50 Score=31.43 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 013502 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 306 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~N 306 (442)
+.++-++.+++.+.++|.+++.....+.+.=. ..||+.|..|.+-+..++......+.++...++--
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv---------sYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVV---------SYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 44455566666666666666555444432221 34577778888888888888888888887766544
No 270
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=67.68 E-value=1.3e+02 Score=31.57 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+-+.+++++..|+.|-.+|+-|-++..++..++.+++...++.
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777777777777777777777777777666655443
No 271
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=67.63 E-value=1.3e+02 Score=33.33 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 013502 171 LECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 203 (442)
Q Consensus 171 ~ECtd~Lle~Ld~qle~~~~E~d~-----Y~~fL~~Le 203 (442)
.|=....+..|..++++++.|... |..|...+.
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666666666666543 556665443
No 272
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.59 E-value=90 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 277 AHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 277 ~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
+.+.++..+.-.++-++.-|+.|++.
T Consensus 79 ~a~~~L~~a~P~L~~A~~al~~l~k~ 104 (344)
T PF12777_consen 79 EAEEELAEAEPALEEAQEALKSLDKS 104 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44455555555555555555555443
No 273
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=67.45 E-value=92 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013502 183 KEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~Le 203 (442)
.++++.....+.|...++.|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444443
No 274
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=67.43 E-value=2.7e+02 Score=33.82 Aligned_cols=18 Identities=28% Similarity=-0.014 Sum_probs=12.7
Q ss_pred CCChhhHHHHHHHHHHHH
Q 013502 332 PVEWDEINAAWGQACLLL 349 (442)
Q Consensus 332 ~V~W~EINAAwGQ~~LLL 349 (442)
-..--|+|.+++|...=.
T Consensus 260 i~~~~~~N~~Ls~~L~~~ 277 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQ 277 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455668999999865543
No 275
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.23 E-value=2.5e+02 Score=32.61 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 265 W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
|.+.-.+......+++++++|.+..+..+..+..|.
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777888999998888887776665543
No 276
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.02 E-value=18 Score=39.46 Aligned_cols=11 Identities=45% Similarity=0.905 Sum_probs=8.9
Q ss_pred eeecCCcceee
Q 013502 366 IIPMGSYPRIM 376 (442)
Q Consensus 366 LvPmGS~SkI~ 376 (442)
-||-|||.+-.
T Consensus 213 YiPsgSf~~av 223 (475)
T PRK13729 213 YIPSGSFAKAM 223 (475)
T ss_pred eeCCCCeEEEE
Confidence 68999998765
No 277
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.91 E-value=1.1e+02 Score=33.37 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 212 ~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
..++..++++..+.+++|..-.--.|+|..++.+.+...+..+..|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666777776666777766666778888777777766665544443
No 278
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.87 E-value=22 Score=36.63 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=12.2
Q ss_pred CcCCcchHHHHHHHH
Q 013502 164 QVEQPLCLECMRVLS 178 (442)
Q Consensus 164 ~IDhPLC~ECtd~Ll 178 (442)
.--|++|+.|.|.|.
T Consensus 22 ~C~H~lCEsCvd~iF 36 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIF 36 (300)
T ss_pred cccchHHHHHHHHHH
Confidence 577889999988884
No 279
>PF13514 AAA_27: AAA domain
Probab=66.85 E-value=2.6e+02 Score=33.44 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHH
Q 013502 331 IPVEWDEINAAWGQACLLLHTMC 353 (442)
Q Consensus 331 ~~V~W~EINAAwGQ~~LLL~tla 353 (442)
..|+.++.-.+----+.|-.-||
T Consensus 1019 ~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1019 ERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred eEeeHHHhCHHHHHHHHHHHHHH
Confidence 46777777776654444444444
No 280
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.77 E-value=1.7e+02 Score=31.16 Aligned_cols=113 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE----TEKQNAEVNAELKELEL 252 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLee----LEkE~~~l~~El~~le~ 252 (442)
.++.|..++..+...+.....-+..-..+... -...+.+-...+..|..+......- ++++.+.+..++..++.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~--~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGAKHPQLVA--LEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChHHHh--HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 253 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (442)
Q Consensus 253 e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q 295 (442)
+...+.+.+ ..|+.+++++.....-...+..+++.+..+
T Consensus 364 ~~~~~~~~~----~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 364 RLSKLPKLQ----VQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHhhchHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 281
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=66.70 E-value=32 Score=34.60 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~ 270 (442)
+.+..++-...+.+....+..||+|.+.+..++++++.+...+.....+||+..+.
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~~ 261 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGGA 261 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 34444444555677788888999999999999999999999998888888876543
No 282
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=66.55 E-value=1.4e+02 Score=33.99 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q 274 (442)
+|.++++.|..+...++.+|+..+.+....+..-++.|.+..+.+..
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555554444445566665555543
No 283
>PLN02372 violaxanthin de-epoxidase
Probab=66.47 E-value=78 Score=34.38 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 249 ELELKSKRFKELEERYWQEFNNFQ 272 (442)
Q Consensus 249 ~le~e~~~L~eeEe~~W~e~N~~q 272 (442)
.+.+..++|++.|..|.++.+.-+
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee 430 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEE 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 344555555556655655444433
No 284
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.33 E-value=18 Score=38.12 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 013502 275 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 315 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG 315 (442)
+.++++++.+++.++..+..-++.=...-++..++-|.+..
T Consensus 275 ~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 275 LKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 33444455555555555555555555556788888887765
No 285
>PLN02678 seryl-tRNA synthetase
Probab=66.28 E-value=65 Score=35.00 Aligned_cols=72 Identities=13% Similarity=0.276 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
...++.++.++.+++..+++.|..++.++.+++..+....+..+ ..-.+...+..++..+++++..++.++.
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~----~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDAT----ELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888889999999999999999999876543221111 1222334444444455555544444444
No 286
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=66.08 E-value=86 Score=30.85 Aligned_cols=7 Identities=14% Similarity=0.601 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013502 267 EFNNFQF 273 (442)
Q Consensus 267 e~N~~q~ 273 (442)
...+|-+
T Consensus 106 ~~t~~Lw 112 (228)
T PRK06800 106 EWTELLW 112 (228)
T ss_pred HHHHHHH
Confidence 3333333
No 287
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=2.6e+02 Score=32.39 Aligned_cols=48 Identities=21% Similarity=0.105 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 255 ~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
..|...-+.+-..+..++.+..+...+++...-+..+++..+++|++.
T Consensus 569 ~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 569 EDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555566666666666666666555666666666666653
No 288
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=66.00 E-value=3.1e+02 Score=33.26 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=5.1
Q ss_pred HhhhhhHHhhhhh
Q 013502 404 NALNCPIRLKMTR 416 (442)
Q Consensus 404 ~fldc~~q~~~~~ 416 (442)
+.+.-+++.-+++
T Consensus 699 ~i~~~q~~~ele~ 711 (1195)
T KOG4643|consen 699 SIRNSQIQGELEN 711 (1195)
T ss_pred HHhcccccchhhc
Confidence 3333444443333
No 289
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=65.93 E-value=81 Score=36.04 Aligned_cols=101 Identities=20% Similarity=0.301 Sum_probs=49.4
Q ss_pred HHHHHhh-cCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchhcccCCHHHHHHHH-HHHHHHH
Q 013502 153 KRAFEIA-TSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEA----CLQRLEGEARDVLSEADFLKEK-LKIEEEE 226 (442)
Q Consensus 153 ~~lFdIL-Ss~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~----fL~~Le~e~~~~~s~e~l~~El-~~LE~EE 226 (442)
++|-+-+ |.-+.++++-|-+- +.++.++..++.+++...- .-++++.+.+...+-|-..++. .+|-.-|
T Consensus 85 a~i~eWles~~p~~~~~s~~~~-----~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatE 159 (861)
T KOG1899|consen 85 ARIAEWLESPSPSMSTVSCPEY-----PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATE 159 (861)
T ss_pred HHHHHHHhccCCCCCCccCCcc-----hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHH
Confidence 3444555 45567888888764 3455555555555554321 1122222222111112222222 1233333
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 227 RKLEAAI---EETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 227 ~~L~~eL---eeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
+-|.+++ ..||.++-.|.+|+.+|+.+...++
T Consensus 160 EmLQqellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 160 EMLQQELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 3344443 4677777777777777776665554
No 290
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=65.66 E-value=2.7e+02 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
++..+++..|....++.+.+..++.+++
T Consensus 483 ~~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 483 EEKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444443333
No 291
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.54 E-value=2.7e+02 Score=32.49 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
++-+.+...+...+..+......+...+.
T Consensus 167 ~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 167 EKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666655555
No 292
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=65.48 E-value=1.5e+02 Score=29.42 Aligned_cols=39 Identities=10% Similarity=0.303 Sum_probs=19.1
Q ss_pred HHHHHHHhhcCC-----CCcCCcchHHHHHHHHHHHHHHHHHHHHH
Q 013502 151 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRD 191 (442)
Q Consensus 151 ~l~~lFdILSs~-----s~IDhPLC~ECtd~Lle~Ld~qle~~~~E 191 (442)
.++++++++.++ ..+.-|- .=.+..+..|+.++..+...
T Consensus 3 i~~r~~~~~~a~~~~~~dk~EDp~--~~l~Q~ird~~~~l~~ar~~ 46 (225)
T COG1842 3 IFSRLKDLVKANINELLDKAEDPE--KMLEQAIRDMESELAKARQA 46 (225)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 345556555432 2234444 44445555566555555443
No 293
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=65.42 E-value=1e+02 Score=27.55 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~ 291 (442)
++..++.+-..+..++.++..+.......+...+ ...+.++..|=.+.+.++....++..+..-|-.|++.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444444444444444444433332 2334455556666666666666666666666666553
No 294
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=65.19 E-value=1.4e+02 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
.++|...+..++..+|.+..+|...+.+++++.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455556666777777777777766666666543
No 295
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=65.06 E-value=2.5e+02 Score=32.02 Aligned_cols=108 Identities=26% Similarity=0.340 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhch---hcccCC-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYE---ACLQRLEGE---ARDVLS-EADF-LKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~---~fL~~Le~e---~~~~~s-~e~l-~~El~~LE~EE~~L~~eLeeLEkE~~~l~~ 245 (442)
+|+| .|-++++.+..|.-... ..|+-++.+ .-+.++ +.++ .-|+...+.-..+|+..|.++|.|+..+.+
T Consensus 294 Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ 371 (832)
T KOG2077|consen 294 ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKA 371 (832)
T ss_pred hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 77777777766655432 233322221 011122 2232 223333334444455555555555555555
Q ss_pred HHHHHHHH-------------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 013502 246 ELKELELK-------------SKRFKELEE-RYWQEFNNFQFQLIAHQEERD 283 (442)
Q Consensus 246 El~~le~e-------------~~~L~eeEe-~~W~e~N~~q~qL~~~~eE~~ 283 (442)
+..+...+ -+++..-|- +..-++|.++-.|+++|+-..
T Consensus 372 ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 372 EAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 55444322 234544444 777889999999999887543
No 296
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=64.95 E-value=96 Score=27.10 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhc---------------------------------ccCCHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR---------------------------------DVLSEADFLKEKLK 221 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~---------------------------------~~~s~e~l~~El~~ 221 (442)
...++.|.++++.+...+..|...++.|+.-.. ...-+.++.+...-
T Consensus 12 ~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~eA~~~ 91 (129)
T cd00584 12 QQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEEAIEF 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
++...+.|.+.+++++++...+.+++..++....++
T Consensus 92 l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 92 LDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 297
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.66 E-value=60 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.|+.....|....++|..|...+.+++..+..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444443
No 298
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=64.58 E-value=80 Score=26.06 Aligned_cols=76 Identities=13% Similarity=0.253 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~--~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
-...++...+.++.+....|...|..+..+..++.+.+.- .+..-. +...|..+..+..++...+...+..+++|+
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455555555555555555555555555444442221 122222 455566666666666667777777677665
No 299
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.07 E-value=1.4e+02 Score=28.79 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 173 CMRVLSDKLDKEVDDVTRDIEAYEA 197 (442)
Q Consensus 173 Ctd~Lle~Ld~qle~~~~E~d~Y~~ 197 (442)
=.+.++..|...+..+.........
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a 52 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIA 52 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666555444433
No 300
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=64.02 E-value=1.5e+02 Score=29.15 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 013502 285 ISSKIEVSQAHLELLK 300 (442)
Q Consensus 285 l~~q~~~~q~qLdkLr 300 (442)
+++|++|.+.-.+.|+
T Consensus 187 v~AQl~Yh~q~~e~L~ 202 (215)
T cd07593 187 LDAELDYHQQSLDVLR 202 (215)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455665555444443
No 301
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.57 E-value=68 Score=34.00 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCc
Q 013502 126 HIPPPEGGTNGPMQPNNSG 144 (442)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ 144 (442)
+.|.+.++..++..+|..+
T Consensus 185 ~~~~~~~d~~~~yp~n~~~ 203 (365)
T KOG2391|consen 185 ALPYMTDDNAEPYPPNASG 203 (365)
T ss_pred cCcccCCCCCCcCCCCccc
Confidence 4444444444444555443
No 302
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=63.44 E-value=87 Score=33.55 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=16.9
Q ss_pred ccchHHHHHHHHHhhcCCCCc-CCcchHH
Q 013502 145 FHSTITVLKRAFEIATSQTQV-EQPLCLE 172 (442)
Q Consensus 145 lss~i~~l~~lFdILSs~s~I-DhPLC~E 172 (442)
++.-+.+|.+=|.|+-.+.+- ..|.|.+
T Consensus 57 inDP~~ALqRDf~~l~Ek~D~EK~p~ct~ 85 (561)
T KOG1103|consen 57 INDPFAALQRDFAILGEKIDEEKIPQCTE 85 (561)
T ss_pred cCChHHHHHHHHHHHhccccccccceecc
Confidence 344456777888888655332 3566665
No 303
>PF13514 AAA_27: AAA domain
Probab=63.16 E-value=3.3e+02 Score=32.63 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999998877776653
No 304
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=62.96 E-value=2e+02 Score=29.96 Aligned_cols=19 Identities=42% Similarity=0.539 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~ 242 (442)
++|.++.+.|.+|++++..
T Consensus 131 e~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 131 EEERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 305
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=62.86 E-value=2.4e+02 Score=33.37 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=6.6
Q ss_pred HHHHHHHHHh
Q 013502 194 AYEACLQRLE 203 (442)
Q Consensus 194 ~Y~~fL~~Le 203 (442)
.|+.++++|.
T Consensus 904 ~~e~~~~~l~ 913 (1259)
T KOG0163|consen 904 NYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHhh
Confidence 4667777665
No 306
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.85 E-value=75 Score=27.64 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
++.++..+.+..-+.+.+.++++-...+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444445554444444433
No 307
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=62.61 E-value=1.7e+02 Score=29.07 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.8
Q ss_pred eccccCCCCCCCCCChhh
Q 013502 320 INNFRLGRLPKIPVEWDE 337 (442)
Q Consensus 320 INGlRLGrlp~~~V~W~E 337 (442)
|+...-|.-|..||++.|
T Consensus 244 v~~~~tG~~~P~~~~fE~ 261 (261)
T cd07674 244 AESKGTGKERPGPVGFEE 261 (261)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 777778888888887654
No 308
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=62.50 E-value=85 Score=25.67 Aligned_cols=87 Identities=17% Similarity=0.339 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l---~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
++....++..+...++.|..-+.... . ..+..++ ..-+..|+.....+..++..++.+.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555533333222 1 1122232 233445677777788888888888888888888777777
Q ss_pred HHHHHHHHHHHHHH
Q 013502 255 KRFKELEERYWQEF 268 (442)
Q Consensus 255 ~~L~eeEe~~W~e~ 268 (442)
+.++.+.++--..+
T Consensus 90 k~~e~L~e~~~~~~ 103 (123)
T PF02050_consen 90 KKLEKLKERRREEY 103 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666443333
No 309
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.37 E-value=66 Score=34.40 Aligned_cols=37 Identities=24% Similarity=0.479 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
..++.++.++-+++..+++.|.+++.++.+++..+..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~ 63 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQAKR 63 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667788888888899999888888888876443
No 310
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.05 E-value=3.6e+02 Score=32.76 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=14.0
Q ss_pred hhccHHHHHhhhhhHHhhhhhhhhhhhHHH
Q 013502 396 KRITFHQINALNCPIRLKMTRWKTIQSRRA 425 (442)
Q Consensus 396 ~rfd~~m~~fldc~~q~~~~~~~~~~~~~~ 425 (442)
++||-.-+.=|...+-=..+--+.||.||.
T Consensus 647 ~~wdek~~~~L~~~k~rl~eel~ei~~~~~ 676 (1141)
T KOG0018|consen 647 AKWDEKEVDQLKEKKERLLEELKEIQKRRK 676 (1141)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 447766544443333333334455555443
No 311
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.98 E-value=2.1e+02 Score=29.93 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
+....+.|+.|+..+.++.+..+.-|+..+.+
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457778888888888877777777766543
No 312
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=61.93 E-value=21 Score=39.73 Aligned_cols=55 Identities=27% Similarity=0.444 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 227 RKLEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (442)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~El~-~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~ 282 (442)
.+|-+.++.+-....+|+++|+ .+-.-....++.|++.|++|..+... -.+.+|+
T Consensus 518 reLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d-p~y~eeK 573 (604)
T KOG4796|consen 518 RELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD-PNYMEEK 573 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC-ccHHHHH
Confidence 3455556666666666666666 44444556688999999999999844 3344333
No 313
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=61.87 E-value=83 Score=31.29 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=6.8
Q ss_pred hhhhhhHHHHHHH
Q 013502 417 WKTIQSRRALISK 429 (442)
Q Consensus 417 ~~~~~~~~~~~~~ 429 (442)
|--+-+.+.+|..
T Consensus 239 ~~~~~aq~q~I~~ 251 (256)
T PF14932_consen 239 SAYICAQHQLIQA 251 (256)
T ss_pred HHHHHHHHHHHHH
Confidence 4444555666643
No 314
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=61.79 E-value=83 Score=25.35 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeE 261 (442)
+.+.+..++...+.+...+..+|+..+..+.++..+......++.--
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666655554444433
No 315
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=61.59 E-value=2.5e+02 Score=30.73 Aligned_cols=34 Identities=18% Similarity=0.131 Sum_probs=16.4
Q ss_pred eeeccccc--ccchhhhhccHHHHHhhhhhHHhhhh
Q 013502 382 TYELTLQN--LQILRIKRITFHQINALNCPIRLKMT 415 (442)
Q Consensus 382 ~y~Ly~s~--~~~~~~~rfd~~m~~fldc~~q~~~~ 415 (442)
..|++... +..+-.|||=.|...+=-+-.+++--
T Consensus 455 r~~~~~~~~~~d~~~~~r~~~a~~~iD~~~ir~g~f 490 (511)
T PF09787_consen 455 RVPLLMKDSPHDIGVARRVKRAASVIDSFSIRLGIF 490 (511)
T ss_pred hhhhhccCCCccchHHHHHHHHHHHHhHhhHHHHHH
Confidence 35555332 33455677766665443333444433
No 316
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.53 E-value=1.3e+02 Score=27.52 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.3
Q ss_pred chHHHHHHHHHhhcC
Q 013502 147 STITVLKRAFEIATS 161 (442)
Q Consensus 147 s~i~~l~~lFdILSs 161 (442)
..+.-++..|.-||.
T Consensus 39 ~~~~elg~~~~~Ls~ 53 (218)
T cd07596 39 SALGEFGKALIKLAK 53 (218)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334445555555544
No 317
>PF13166 AAA_13: AAA domain
Probab=61.43 E-value=2.7e+02 Score=31.03 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=13.6
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 013502 326 GRLPKIPVEWDEINAAWGQACLLLHTMCQ 354 (442)
Q Consensus 326 Grlp~~~V~W~EINAAwGQ~~LLL~tla~ 354 (442)
|..|....+.-|=| ++-|+++|+.
T Consensus 494 ~~~~~~~LSEGEk~-----~iAf~yFla~ 517 (712)
T PF13166_consen 494 GSKPAKILSEGEKR-----AIAFAYFLAE 517 (712)
T ss_pred CCcccCccCHHHHH-----HHHHHHHHHH
Confidence 44555667777764 3444555554
No 318
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=61.33 E-value=2.1e+02 Score=29.69 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 013502 182 DKEVDDVTRDIE 193 (442)
Q Consensus 182 d~qle~~~~E~d 193 (442)
+.-+.+.+.|..
T Consensus 83 r~~~~~~E~et~ 94 (312)
T smart00787 83 RDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 319
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.33 E-value=1.1e+02 Score=33.97 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=9.7
Q ss_pred cccCCCCcccceEEE
Q 013502 99 ASQSGKAMDESFVVI 113 (442)
Q Consensus 99 ~~~~~~~~~eSfV~l 113 (442)
+..+++.-.+.||.+
T Consensus 182 t~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 182 TRNPSRTDDEGFVTL 196 (508)
T ss_pred cCCCCccCCCCeeee
Confidence 455666666777775
No 320
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.11 E-value=2.1e+02 Score=29.73 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~ 294 (442)
.+..+-..+-.++.+|-.+-.+.-.+|..+-.+...+...=..|-.++-.+....-++.++...+.+.|.-...
T Consensus 169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444445555555555555555555555554444333
No 321
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.00 E-value=2.7e+02 Score=32.03 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=11.9
Q ss_pred HhhhhhHHhhhhhhhhh
Q 013502 404 NALNCPIRLKMTRWKTI 420 (442)
Q Consensus 404 ~fldc~~q~~~~~~~~~ 420 (442)
+=+++|.|||..+-|.+
T Consensus 297 ~Ev~Rl~qlK~s~mKel 313 (660)
T KOG4302|consen 297 KEVDRLEQLKASNMKEL 313 (660)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34677888888876653
No 322
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.87 E-value=1.7e+02 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
.|..+..+|.+.+..+.++..-+++||+.|.
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~ 113 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELS 113 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555444
No 323
>PF15294 Leu_zip: Leucine zipper
Probab=60.86 E-value=2.1e+02 Score=29.55 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKS-------------KRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~-------~l~~El~~le~e~-------------~~L~eeEe~~W~e~N~~q~q 274 (442)
+.+|..+|.+|-.+|...|..+|++.- .+.++|.+++... ..+.++|...-.--+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 457778888888888888877776444 4444444444311 22334555555545555554
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 275 LIAHQEERDAISSKIEVS 292 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~ 292 (442)
+........+++..+..+
T Consensus 210 ~~d~~~~~k~L~e~L~~~ 227 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSC 227 (278)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 324
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.62 E-value=3e+02 Score=31.33 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 270 NFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+|+.+++..-++.+++.+-++-+....+|
T Consensus 659 dFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 659 DFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566665555555544444
No 325
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.58 E-value=1.8e+02 Score=28.65 Aligned_cols=35 Identities=14% Similarity=0.085 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+=.+.-.++..|...+-...|++.+++.-....+-
T Consensus 159 ~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~E 193 (207)
T PF05010_consen 159 HQAELLALQASLKKEEMKVQSLEESLEQKTKENEE 193 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445544455555555555444433333
No 326
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=60.57 E-value=52 Score=28.11 Aligned_cols=26 Identities=27% Similarity=0.587 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
++.+..+++.++..++.|....+.|+
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~ 30 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLE 30 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999987766654
No 327
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=60.55 E-value=1.1e+02 Score=26.25 Aligned_cols=77 Identities=22% Similarity=0.356 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhchhc--------------ccCCHHH-HHHHHH-HHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEAR--------------DVLSEAD-FLKEKL-KIEEEERKLEAAIEETE 237 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~f--L~~Le~e~~--------------~~~s~e~-l~~El~-~LE~EE~~L~~eLeeLE 237 (442)
.|-+....+++..-+|++....+ |+.|-.+.. +.++.++ +..-+. .++.+...|...|++++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888888877643 334422210 1123333 333222 24667778888899999
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 238 KQNAEVNAELKELEL 252 (442)
Q Consensus 238 kE~~~l~~El~~le~ 252 (442)
++...+.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 998888888877654
No 328
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=60.44 E-value=1.8e+02 Score=32.89 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
++.+.+.|.+++..++... ....+.. +.. -+. +.....+..+++++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~~~------v~~-------l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-EKQ------VNS-------LMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-hHH------HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888774332 2222221 100 122 22333444455555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013502 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (442)
Q Consensus 254 ~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV 304 (442)
.+.++.+....-.+. .....+.++++.|..++.....+|+.|+..++
T Consensus 67 i~~IE~qn~~Lqvq~----~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGLQVQS----ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCchhhHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 443333332221111 12233457777888888888889999988665
No 329
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.37 E-value=1e+02 Score=25.88 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 236 TEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (442)
Q Consensus 236 LEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~ 268 (442)
|..|...+....++|+.+..+++ +|..-|++.
T Consensus 37 l~~e~q~~q~~reaL~~eneqlk-~e~~~WQer 68 (79)
T COG3074 37 LSQEVQNAQHQREALERENEQLK-EEQNGWQER 68 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333344444455555555553 344566543
No 330
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=60.36 E-value=1.8e+02 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 238 KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 238 kE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
....+|..++.-+....+.|...++.|....-.+.-++..+.+.+.....+-+++.....+|.+
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 3334444444444444444555555555555555555555555555444444444444444443
No 331
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=60.29 E-value=1.9e+02 Score=29.07 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH
Q 013502 171 LECMRVLSDKLDKEVDDV-TR---DIEAYEACLQR 201 (442)
Q Consensus 171 ~ECtd~Lle~Ld~qle~~-~~---E~d~Y~~fL~~ 201 (442)
.++--..++.+..+|... .+ =-..|..||+.
T Consensus 150 ~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~ 184 (297)
T PF02841_consen 150 YQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHH
Confidence 455556666666666554 22 22346667665
No 332
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=60.26 E-value=1.3e+02 Score=34.35 Aligned_cols=40 Identities=23% Similarity=0.364 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+..+|+++-.+|..+|.++.++.+....++...+.+.++.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~ 119 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQM 119 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777777777777777766666666555444
No 333
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.17 E-value=2e+02 Score=29.26 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
.+|.+=+++...++..|+++..++++.|....++..-|
T Consensus 70 ~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 70 AELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666777777777777777777766655443
No 334
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=59.97 E-value=2.5e+02 Score=30.90 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=7.6
Q ss_pred chhhhhccHHHHHhh
Q 013502 392 ILRIKRITFHQINAL 406 (442)
Q Consensus 392 ~~~~~rfd~~m~~fl 406 (442)
-+...|+.-|+...+
T Consensus 443 gGe~~rv~la~~l~~ 457 (563)
T TIGR00634 443 GGELSRVMLALKVVL 457 (563)
T ss_pred HhHHHHHHHHHHHhh
Confidence 345556655544443
No 335
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=59.73 E-value=82 Score=30.84 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.....-++...+++.+.|+..+..=+..|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777777777777777776
No 336
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=59.62 E-value=35 Score=35.22 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe 262 (442)
..|-+.|+-|++.||+..++|..+..+++.|+..|++.=.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788888888888888888877777766665443
No 337
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.41 E-value=88 Score=35.55 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcc--cCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLSEADFLKEKLKIEEEE-------RKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~--~~s~e~l~~El~~LE~EE-------~~L~~eLeeLEkE~~~l~~El~ 248 (442)
+..|.++|+++.+-|-...--|+++...... .+...+ ...++.||+|. .+|.+|++.+++-.++++....
T Consensus 461 ~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~d-~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~e 539 (852)
T KOG4787|consen 461 VISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYSD-ELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCE 539 (852)
T ss_pred HHHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHH
Confidence 3446677777777777766666665432110 011000 11112233322 2677777777777766666655
Q ss_pred HHHH
Q 013502 249 ELEL 252 (442)
Q Consensus 249 ~le~ 252 (442)
.|..
T Consensus 540 vL~~ 543 (852)
T KOG4787|consen 540 VLAA 543 (852)
T ss_pred HHHH
Confidence 5543
No 338
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=59.33 E-value=29 Score=36.45 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=4.5
Q ss_pred eccccCCCCCCC
Q 013502 320 INNFRLGRLPKI 331 (442)
Q Consensus 320 INGlRLGrlp~~ 331 (442)
=|++|+=.+|..
T Consensus 190 RnNiRIiGiPEg 201 (370)
T PF02994_consen 190 RNNIRIIGIPEG 201 (370)
T ss_dssp TTEEEEES----
T ss_pred CCceeEEecCCC
Confidence 356666446553
No 339
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=59.18 E-value=2.4e+02 Score=29.76 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+...+.+-...|..++..++..+..|.+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666666665555544
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=59.02 E-value=60 Score=36.20 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 231 AAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e 253 (442)
++++.+|++.+++++++.+++.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~ 585 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEK 585 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 341
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.94 E-value=2.3e+02 Score=30.95 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhc
Q 013502 345 ACLLLHTMCQYF 356 (442)
Q Consensus 345 ~~LLL~tla~kl 356 (442)
.+=|..+|+..+
T Consensus 208 k~~~~~tLaGs~ 219 (459)
T KOG0288|consen 208 KSELISTLAGSL 219 (459)
T ss_pred hhhhhhhhhccC
Confidence 344455555543
No 342
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.89 E-value=2.3e+02 Score=29.54 Aligned_cols=27 Identities=4% Similarity=0.015 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 273 FQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 273 ~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
.++..++.+.+..+..|+.....++..
T Consensus 342 ~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 342 DEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554444433
No 343
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.88 E-value=3.4e+02 Score=31.43 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s-~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
...+..++..+.++++.|....+.+.+.....-. .++...++..-+....+++.++..+..++.+..+.+.....+..-
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 257 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 257 L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+.+-=..|-++.+.+ +.|.+.|.++.+...-|=|
T Consensus 501 ~~e~i~~~~ke~~~L-------e~En~rLr~~~e~~~l~gd 534 (716)
T KOG4593|consen 501 LREKIEQYLKELELL-------EEENDRLRAQLERRLLQGD 534 (716)
T ss_pred hhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
No 344
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=58.82 E-value=1.8e+02 Score=31.27 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=10.3
Q ss_pred cchhhhhccHHHHHh
Q 013502 391 QILRIKRITFHQINA 405 (442)
Q Consensus 391 ~~~~~~rfd~~m~~f 405 (442)
+++-+.||.+|---|
T Consensus 460 qvginqrfhaaRhkf 474 (561)
T KOG1103|consen 460 QVGINQRFHAARHKF 474 (561)
T ss_pred hhcchhhhhhccchh
Confidence 677788887765444
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=58.68 E-value=62 Score=36.10 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNA 241 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~ 241 (442)
+++.++|++..+|++++.++|.+.+
T Consensus 563 ~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 563 KEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666666554
No 346
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=58.63 E-value=3.5e+02 Score=32.30 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCC---CceeeeecCCeeeec
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT---NVLN---DAFPIWHDGEFGTIN 321 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt---NV~N---d~F~I~hdG~fGTIN 321 (442)
+.+..++.++.+.-.+--|+..-......+|..+++. -|++ ++|.==.||.|.+|+
T Consensus 818 ~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 818 QRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHhhccCCceeeee
Confidence 3344445555555555555555555566666655543 2333 456433789999887
No 347
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=58.36 E-value=1.5e+02 Score=27.07 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~E 246 (442)
+.++|.++....+.+.+.
T Consensus 57 a~~~L~~~~~~~~~i~e~ 74 (126)
T PF09403_consen 57 AEAELAELKELYAEIEEK 74 (126)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 333343333333333333
No 348
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=58.15 E-value=1.1e+02 Score=25.49 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
|...+..+...++.+..++..++
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~ 27 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLI 27 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445555555555555555444
No 349
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=57.96 E-value=1.5e+02 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGE 205 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e 205 (442)
++..-..|..+++++..|..-.++|+.+
T Consensus 7 mee~~~kyq~LQk~l~k~~~~rqkle~q 34 (120)
T KOG3478|consen 7 MEEEANKYQNLQKELEKYVESRQKLETQ 34 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999888888754
No 350
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.56 E-value=35 Score=29.77 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
+++++...+.+++++++.+.++|..++..++
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555444
No 351
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=57.56 E-value=70 Score=31.15 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 013502 284 AISSKIEVSQAHLELLK 300 (442)
Q Consensus 284 sl~~q~~~~q~qLdkLr 300 (442)
..++++..++.+|+.++
T Consensus 113 ~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 113 AAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 352
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=57.54 E-value=3.7e+02 Score=32.13 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
.+.+.+..+..+...+.+....-|.
T Consensus 184 ~~~~~l~er~k~~~~~l~~l~~~l~ 208 (1047)
T PRK10246 184 QISAMVFEQHKSARTELEKLQAQAS 208 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666666666666666555555553
No 353
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=57.36 E-value=4.4e+02 Score=32.19 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F 309 (442)
.|.+..+.....+..+.+...+...+.|++-|+-+.++...+
T Consensus 281 ~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L 322 (1109)
T PRK10929 281 MDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEAL 322 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334444444444444555555555566777777777776555
No 354
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=56.88 E-value=1.2e+02 Score=25.67 Aligned_cols=61 Identities=28% Similarity=0.345 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 187 ~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
.+.++++.|...+.-++++..-. ...+ ..++..+-.++..+..+|.++++++..+-..+..
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l-~~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~ 69 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREAL-ISGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLGA 69 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556667777777666543211 1111 2345556677778888888888888877665543
No 355
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.68 E-value=1.1e+02 Score=32.64 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
..++..+.++.+++..+++.|..++..+.+++..+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667778888888888888888888888887643
No 356
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=56.50 E-value=2.3e+02 Score=28.81 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
..|..+++...++|.++|+-+..+..+|+.-+..+|.+
T Consensus 119 y~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 119 YNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444443
No 357
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=56.27 E-value=1.1e+02 Score=31.02 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 256 RFKELEERYWQEFNNFQFQLIAHQEER 282 (442)
Q Consensus 256 ~L~eeEe~~W~e~N~~q~qL~~~~eE~ 282 (442)
.|....+.+.-+-+++...|..+.+++
T Consensus 115 ~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 115 SLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333333333333344444443333333
No 358
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=56.22 E-value=4.8e+02 Score=32.36 Aligned_cols=24 Identities=29% Similarity=0.167 Sum_probs=16.4
Q ss_pred hhhhccHHHHHhhhhhHHhhhhhh
Q 013502 394 RIKRITFHQINALNCPIRLKMTRW 417 (442)
Q Consensus 394 ~~~rfd~~m~~fldc~~q~~~~~~ 417 (442)
...+|--+-..|++|+..++.+.-
T Consensus 1079 ~~~~~kd~~~nyr~~~ie~~tt~~ 1102 (1294)
T KOG0962|consen 1079 REKDFKDAEKNYRKALIELKTTEL 1102 (1294)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHH
Confidence 335666677777777777777654
No 359
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.19 E-value=3.2e+02 Score=30.28 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le 251 (442)
..+|+++|.++..+.+++..-+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~e 365 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNE 365 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 5667777777777777766433
No 360
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.85 E-value=85 Score=36.79 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
..+.++++......+...|.++..+.+.+.+.+++.--+...++-+...+..+..+++.|+.....||...
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445666666666777777777777777777777767777777777777777777777777777776643
No 361
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=55.81 E-value=48 Score=36.95 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 013502 188 VTRDIEAYEACLQRLE 203 (442)
Q Consensus 188 ~~~E~d~Y~~fL~~Le 203 (442)
..+.++.+...++.|+
T Consensus 48 ~~~~~~~~~~~l~~L~ 63 (646)
T PRK05771 48 LRSLLTKLSEALDKLR 63 (646)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555444
No 362
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=55.77 E-value=1.6e+02 Score=26.75 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013502 291 VSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (442)
Q Consensus 291 ~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (442)
|+..+.+.|- ..+ +.+-+|||| |||.+.
T Consensus 58 y~e~~r~e~~------k~K--s~~l~~G~v-~~R~~~ 85 (149)
T PF07352_consen 58 YAEANRDELT------KKK--SLKLPFGTV-GFRKST 85 (149)
T ss_dssp HHHCTHHHH-------------EE-SS-EE-------
T ss_pred HHHHCHHhcc------cce--EEEcCCeeE-EEEecC
Confidence 6666666665 222 246788988 799885
No 363
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=55.70 E-value=2.9e+02 Score=29.73 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCC
Q 013502 338 INAAWGQACLLLHTMCQYFRP 358 (442)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~~ 358 (442)
||--+--+.+||.+++.-+++
T Consensus 344 inllL~l~~vlLv~vSt~~~~ 364 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVANC 364 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 444455555555555555433
No 364
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=55.68 E-value=2.7e+02 Score=29.22 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 013502 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (442)
+++..+++++..++.+++.++..--++..-.=-+||....++ +..|.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~ 273 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQ 273 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCC
Confidence 445566677777777777666554333333334566665555 35554
No 365
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=55.67 E-value=8.4 Score=43.65 Aligned_cols=25 Identities=28% Similarity=0.080 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhcccCCCceeee
Q 013502 288 KIEVSQAHLELLKRTNVLNDAFPIW 312 (442)
Q Consensus 288 q~~~~q~qLdkLrktNV~Nd~F~I~ 312 (442)
+++..+..|.+.-+.|+|-..+.|.
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~Ie 178 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEIE 178 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S----
T ss_pred hHHHHHHHHHHhccCCeEEEEEeee
Confidence 4555667788888899998777554
No 366
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=55.44 E-value=66 Score=36.67 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~ 294 (442)
|+.+|+.|++|+++ |+. ......++..+..-++.+.++..+..++||+.-+.+....+..
T Consensus 2 LRdkL~~Lq~ek~~---E~~---~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQK---ERQ---ALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666665542 222 2223344445555677888888899999999888777655443
No 367
>PRK00106 hypothetical protein; Provisional
Probab=55.27 E-value=3.4e+02 Score=30.35 Aligned_cols=15 Identities=7% Similarity=0.313 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAE 242 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~ 242 (442)
+|.+..+.|++....
T Consensus 105 rL~qREE~LekRee~ 119 (535)
T PRK00106 105 RLTERATSLDRKDEN 119 (535)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 368
>PLN03188 kinesin-12 family protein; Provisional
Probab=55.18 E-value=4.5e+02 Score=32.60 Aligned_cols=31 Identities=35% Similarity=0.537 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 013502 243 VNAELKELELKSKRFKELEERYWQEFNN-FQFQLIA 277 (442)
Q Consensus 243 l~~El~~le~e~~~L~eeEe~~W~e~N~-~q~qL~~ 277 (442)
|++||..|+.| .+.|.+||++-|. +|.||..
T Consensus 1160 laae~s~l~~e----reker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1160 LAAEISALKVE----REKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhh
Confidence 55555555443 3567789988875 4555443
No 369
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=55.12 E-value=2.2e+02 Score=28.00 Aligned_cols=62 Identities=16% Similarity=0.107 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHH
Q 013502 276 IAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQAC 346 (442)
Q Consensus 276 ~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~ 346 (442)
.+.++++..+..+++..+.++..|.+.-- -.+.+|....+-.. .|..+--|..|-.||....
T Consensus 165 l~ie~~L~~v~~eIe~~~~~~~~l~~~v~-~sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~ 226 (262)
T PF14257_consen 165 LEIERELSRVRSEIEQLEGQLKYLDDRVD-YSTITISLYEPESI--------KPESPSFGSRFRDALKNGW 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-eEEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHH
Confidence 33344444444445555554544443222 24555555544100 1123445666655555443
No 370
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=54.97 E-value=1.7e+02 Score=28.34 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 013502 184 EVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 184 qle~~~~E~d~Y~~fL~~Le 203 (442)
+++...+=++.|.+-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666666554
No 371
>PRK10869 recombination and repair protein; Provisional
Probab=54.97 E-value=3.3e+02 Score=30.19 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=2.7
Q ss_pred hhhccHH
Q 013502 395 IKRITFH 401 (442)
Q Consensus 395 ~~rfd~~ 401 (442)
..|+.-|
T Consensus 436 ~~Ri~LA 442 (553)
T PRK10869 436 LSRIALA 442 (553)
T ss_pred HHHHHHH
Confidence 3344333
No 372
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.66 E-value=2.4e+02 Score=33.35 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 276 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~ 276 (442)
++....++..+++.+.+...++..|.++++++...+..+-.+.-+.++.++.||.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555555555555555555555554444444444445555554443
No 373
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.28 E-value=3.8e+02 Score=33.20 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=12.0
Q ss_pred HHHHhhcccCCCceeeeecCCee
Q 013502 296 LELLKRTNVLNDAFPIWHDGEFG 318 (442)
Q Consensus 296 LdkLrktNV~Nd~F~I~hdG~fG 318 (442)
...|+..+-.|..|..-++..+|
T Consensus 947 ~s~l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 947 VSLLHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHHHHhHHHHHHHhhhhhc
Confidence 33444444555566555555554
No 374
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=54.24 E-value=45 Score=32.47 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 277 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~ 277 (442)
+......++++...++.+|..++. +++..|++||+.|..++.-+..
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~---rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEE---RLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666664 5678888999999888765443
No 375
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=54.20 E-value=1.8e+02 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (442)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~ 268 (442)
..|..-|+.||+++..|..+++..+- +|+++.+.|.+..
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~---rLeQEsKAyhk~n 92 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEW---RLEQESKAYHKAN 92 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 55677788899999999999888875 5677776665533
No 376
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.91 E-value=45 Score=26.28 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
+..+..+|.+++++++++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555454444
No 377
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=53.50 E-value=2.6e+02 Score=29.07 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 289 (442)
Q Consensus 210 ~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~ 289 (442)
++.|+.+-=+++-|--.+.|...|++-+..+.+-+.||.+|+.++.+..+.=-+===.+=+-|+-|.+...|..+|+.-+
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013502 290 EVSQAHL 296 (442)
Q Consensus 290 ~~~q~qL 296 (442)
+...+.|
T Consensus 134 eTmrssL 140 (305)
T PF15290_consen 134 ETMRSSL 140 (305)
T ss_pred HHHHhhh
No 378
>PRK11281 hypothetical protein; Provisional
Probab=53.19 E-value=92 Score=37.64 Aligned_cols=9 Identities=44% Similarity=0.438 Sum_probs=4.2
Q ss_pred hHHHHHHHH
Q 013502 337 EINAAWGQA 345 (442)
Q Consensus 337 EINAAwGQ~ 345 (442)
++|.+++|.
T Consensus 285 ~~N~~Ls~~ 293 (1113)
T PRK11281 285 EINLQLSQR 293 (1113)
T ss_pred HHHHHHHHH
Confidence 445544444
No 379
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.09 E-value=61 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
+||.+..++...+..+++|.+++..++++++.-.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665555433
No 380
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.82 E-value=1.7e+02 Score=30.26 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
|-.|...|.-++.-|.+.++++++.+..++.+
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re 134 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQRE 134 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 381
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=52.71 E-value=1.7e+02 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 273 FQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 273 ~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
..+..++++...+..+++..+..+..
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444433333
No 382
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=52.56 E-value=1.2e+02 Score=33.78 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 172 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
-|+..|-+.=..|+..+.+..+.|..-.+++..+. ..+..++.+.+.+...|+-.|....++....-++.+.+|
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~------~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae 90 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAEL------GKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAE 90 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 46666666556666666666555555545443321 122333344444444455555444444433333333333
Q ss_pred HH
Q 013502 252 LK 253 (442)
Q Consensus 252 ~e 253 (442)
.+
T Consensus 91 ~d 92 (604)
T KOG3564|consen 91 AD 92 (604)
T ss_pred hh
Confidence 33
No 383
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=52.53 E-value=1.7e+02 Score=26.07 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.+..+.-++.+..+...|+-.+.++... .+--..|....+.+..+...+++.+.++.+++..+|...+.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~------~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLI------LEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666555554421 11112344455566666666666666666666666555543
No 384
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.41 E-value=2.9e+02 Score=28.60 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=4.2
Q ss_pred eeeccccCC
Q 013502 318 GTINNFRLG 326 (442)
Q Consensus 318 GTINGlRLG 326 (442)
|+=|-|...
T Consensus 221 gs~~~f~~p 229 (333)
T KOG1853|consen 221 GSKEEFKMP 229 (333)
T ss_pred CchhhcCCC
Confidence 444545443
No 385
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=51.94 E-value=41 Score=28.79 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 182 DKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (442)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~Le~e~~-~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~ 245 (442)
.+|++.+++....|..-|+.++..-. ..+++++ ...+|+|...+...+...|+++..|..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~----R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEA----RRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHH----HHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 46777777777777777776654321 1223222 223455555555555555555544443
No 386
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.58 E-value=1.5e+02 Score=30.67 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhh
Q 013502 290 EVSQAHLELLKR 301 (442)
Q Consensus 290 ~~~q~qLdkLrk 301 (442)
.|...+|+-+-|
T Consensus 192 ~yL~~qldd~~r 203 (338)
T KOG3647|consen 192 DYLKSQLDDRTR 203 (338)
T ss_pred HHHHHHHHHHhh
Confidence 344445554433
No 387
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=51.57 E-value=62 Score=29.95 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
||.+...|.++++.|..|.+++..|+.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443333333
No 388
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.40 E-value=3.4e+02 Score=30.79 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
..++|+.-++++..|.+-+..++.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~ 352 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQA 352 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 389
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.29 E-value=2.5e+02 Score=27.66 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 262 ERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 262 e~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
+..|...+.|..+|.++++-++...++
T Consensus 181 ~~i~~~L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 181 EAIRDDLNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666655554333
No 390
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=51.25 E-value=71 Score=30.72 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=8.0
Q ss_pred CcCCcchHHHHHH
Q 013502 164 QVEQPLCLECMRV 176 (442)
Q Consensus 164 ~IDhPLC~ECtd~ 176 (442)
-=|||+|=|++|-
T Consensus 98 ICDy~~CCDGSDE 110 (176)
T PF12999_consen 98 ICDYDICCDGSDE 110 (176)
T ss_pred cCcccccCCCCCC
Confidence 3567777666554
No 391
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=51.10 E-value=1.8e+02 Score=26.88 Aligned_cols=74 Identities=28% Similarity=0.409 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcc--cCC--HHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD-F-----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~--~~s--~e~-l-----~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
..++.+++....+++........++--..+ .+. .-+ | .+-...||+-.+.+.++|+.+|.+.+.+..+|.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777666655421111 000 000 1 122234777777888888888888888888887
Q ss_pred HHHH
Q 013502 249 ELEL 252 (442)
Q Consensus 249 ~le~ 252 (442)
+|+.
T Consensus 113 ~LK~ 116 (131)
T KOG1760|consen 113 ELKK 116 (131)
T ss_pred HHHH
Confidence 7765
No 392
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=51.03 E-value=58 Score=24.74 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
...+..|..++..|+.+...|..++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777777777777777666654
No 393
>PLN02320 seryl-tRNA synthetase
Probab=50.98 E-value=1.3e+02 Score=33.41 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
.++..+.++-+++..+++++..++.++.+++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666777777777777777777654
No 394
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=50.95 E-value=1.7e+02 Score=29.93 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 274 QLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
++...+.+....+++++.++.+|+.+
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~ 184 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYT 184 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555556667777777776543
No 395
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=50.64 E-value=1.6e+02 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEAC 198 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~f 198 (442)
++.+...+..+.+.-..-
T Consensus 34 ld~~~r~l~~~~e~lr~~ 51 (108)
T PF02403_consen 34 LDQERRELQQELEELRAE 51 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 396
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.53 E-value=2.2e+02 Score=30.96 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~ 294 (442)
...++.+|..+-+++..++++|..++.++.++|.....+... .....-.+.+.+.-++.....+.+.++++++..
T Consensus 27 ~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~-- 101 (429)
T COG0172 27 DVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTL-- 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--
Confidence 345667788889999999999999999999888743332211 122344555555555555555555544444322
Q ss_pred HHHHHhhcccCCCceeeeecC
Q 013502 295 HLELLKRTNVLNDAFPIWHDG 315 (442)
Q Consensus 295 qLdkLrktNV~Nd~F~I~hdG 315 (442)
.|.--|+-.+.=.++-|+
T Consensus 102 ---ll~ipNi~~~~VPvg~de 119 (429)
T COG0172 102 ---LLTIPNIPHESVPVGKDE 119 (429)
T ss_pred ---HHhCCCCCccccCcCCCc
Confidence 234457776666665543
No 397
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=50.52 E-value=1.8e+02 Score=25.85 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~ 273 (442)
+..|..........+..++.+.+.....+.+...+.+.++.+-++...+|...+.
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777788888888888888888888888888888888777765544
No 398
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=50.38 E-value=1.6e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..+|..++....++.-.+......+..+.
T Consensus 33 ~~rl~~Ek~kadqkyfa~mr~~d~l~~e~ 61 (96)
T PF08647_consen 33 KLRLEAEKAKADQKYFAAMRSKDALDNEM 61 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33333333333333333333333333333
No 399
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=50.36 E-value=2.9e+02 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 275 LIAHQEERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
|..+.+.++.|..+.-....++|+++|.+
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~~ 249 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKLK 249 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 44455555555555555556666666543
No 400
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=50.23 E-value=4.6e+02 Score=30.40 Aligned_cols=77 Identities=18% Similarity=0.333 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV 304 (442)
.+...++...+.-.++...+..|+.+.......=++.-..|++....+.-+...+.-++..+.-....|.++++-++
T Consensus 549 ~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 549 TLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33333444444445555555555555544444444445566666666666665555666666666666666666554
No 401
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.47 E-value=4.7e+02 Score=31.90 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=17.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 013502 167 QPLCLECMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 202 (442)
Q Consensus 167 hPLC~ECtd~Lle~Ld~qle~~~~E~d-----~Y~~fL~~L 202 (442)
.|--.+|.. -++....+.+.++.... .|..|..++
T Consensus 724 ~p~i~~i~r-~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 724 GPEISEIKR-KLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred CchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 454554444 45555555555544333 366665544
No 402
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=49.43 E-value=2.2e+02 Score=29.99 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEA 197 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (442)
++.++.+=.++.+.+..|+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqE 21 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQE 21 (351)
T ss_pred chhhhhhcHHHHHHHHHHHH
Confidence 34455555555555555553
No 403
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=49.37 E-value=3.3e+02 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQR 201 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~ 201 (442)
....++.++.+++.++.+++.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667777777777777777665553
No 404
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.33 E-value=2.6e+02 Score=28.00 Aligned_cols=20 Identities=30% Similarity=0.435 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNA 241 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~ 241 (442)
+..+...|..++..++++..
T Consensus 140 ~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 140 LDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 405
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=49.33 E-value=3.4e+02 Score=28.57 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 013502 172 ECMRVLSDKLDKEVDDVTRDIEAYE--ACLQRLE 203 (442)
Q Consensus 172 ECtd~Lle~Ld~qle~~~~E~d~Y~--~fL~~Le 203 (442)
.|...--+.|+.+|+.+.++.+.+- .|+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 4777788999999999999888742 4444444
No 406
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=49.28 E-value=1.6e+02 Score=26.89 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 234 eeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
+.++++++++.+.-...+.....+...++.-|.. +.++--+..+.+-+..|+..+.--+..++.+
T Consensus 55 e~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk-~eYk~llk~y~~~~~~L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 55 EAAEAELAELKELYAEIEEKIEKLKQDSKVRWYK-DEYKELLKKYKDLLNKLDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555444422221 3344444444444444444444444444433
No 407
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.18 E-value=3.9e+02 Score=29.26 Aligned_cols=20 Identities=15% Similarity=-0.096 Sum_probs=9.8
Q ss_pred cchhhhhccHHHHHhhhhhHHhhh
Q 013502 391 QILRIKRITFHQINALNCPIRLKM 414 (442)
Q Consensus 391 ~~~~~~rfd~~m~~fldc~~q~~~ 414 (442)
.++....++.|. ..+.+|+-
T Consensus 532 ~~l~~gdL~~A~----~~~~~L~g 551 (582)
T PF09731_consen 532 YYLERGDLDKAA----RELNQLKG 551 (582)
T ss_pred HHHHCCCHHHHH----HHHHhCch
Confidence 445555555554 34445544
No 408
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=49.11 E-value=4.3e+02 Score=31.03 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.|++|++.+.+.+++++++++++...+++|..+.++|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666666666666666666666665555554
No 409
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=48.85 E-value=2.7e+02 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.215 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQE 280 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~e 280 (442)
+...++|...|.-...+..++.........|...|+.+-..+-...+.++.++..++.
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677778887778888888888888888888877776666666666666555543
No 410
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=48.78 E-value=5.8e+02 Score=31.75 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=27.6
Q ss_pred HHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 152 LKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 152 l~~lFdILSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
....|+.++...-+-+--=.+=-.....-+......+...+..|...|++|..
T Consensus 676 ~~~~~~~~~r~~~~tp~~~l~~i~~f~~ll~~k~~~~~~~~~r~~~gl~kl~~ 728 (1395)
T KOG3595|consen 676 FASYFDRLSRHNYVTPTSYLEFIGTFKKLLKEKRSEVRLRKLRLELGLDKLKE 728 (1395)
T ss_pred hHHHHHhcCceeecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Confidence 33444555443333332222223334455566666666777777777777653
No 411
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=48.72 E-value=2.7e+02 Score=30.82 Aligned_cols=63 Identities=11% Similarity=-0.013 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC------------CeeeeccccCCCC
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG------------EFGTINNFRLGRL 328 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG------------~fGTINGlRLGrl 328 (442)
+.-...+-|+..+.++..+..+........++.++..|=|-.+|-=.... -=.+||-+|+--+
T Consensus 348 ~l~s~~~~q~~~~h~~ka~~~~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~ 422 (554)
T KOG4677|consen 348 HLESAGQTQIFRKHPRKASILNMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAW 422 (554)
T ss_pred hHHHHhHHHHHHhhhHhhhhhhchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhh
Confidence 33455677778888888888888888888888888887777666322211 1245787777543
No 412
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=48.69 E-value=5.2e+02 Score=30.52 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL----EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ee----Ee~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
|+...++..+.++.|....++|-+.++.++.|.+++-.+ +.++.+....|..+...+.-|.....+++...+-.|+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe 518 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLE 518 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 556666667777777777777777777777666655433 6677777777777777777778788888888888888
Q ss_pred HHhhccc
Q 013502 298 LLKRTNV 304 (442)
Q Consensus 298 kLrktNV 304 (442)
.-.+-|.
T Consensus 519 ~sekEN~ 525 (861)
T PF15254_consen 519 ASEKENQ 525 (861)
T ss_pred HHHhhhh
Confidence 8888774
No 413
>PRK09343 prefoldin subunit beta; Provisional
Probab=48.69 E-value=2e+02 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 275 LIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 275 L~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
+..++.....+..++.-.+.+|..+
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 414
>PRK10869 recombination and repair protein; Provisional
Probab=48.40 E-value=4.2e+02 Score=29.38 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCce
Q 013502 233 IEETEKQNAEVNAELKELEL---KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAF 309 (442)
Q Consensus 233 LeeLEkE~~~l~~El~~le~---e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F 309 (442)
++++-.-.+++.+++..++. ....|+++.++.+..+...-.+|. +.|...-.++ ...=...|+..+.=+..|
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l--~~~v~~~L~~L~m~~a~f 393 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKEL--AQLITESMHELSMPHGKF 393 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHHcCCCCcEE
Confidence 34444444445555544443 233334444444444433333322 2232222222 222345677788889999
Q ss_pred eeee
Q 013502 310 PIWH 313 (442)
Q Consensus 310 ~I~h 313 (442)
+|..
T Consensus 394 ~v~~ 397 (553)
T PRK10869 394 TIDV 397 (553)
T ss_pred EEEE
Confidence 9886
No 415
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=48.40 E-value=1.8e+02 Score=25.11 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
+++......+..++..|.+.-..|+......+.=+.+.+.+..+-...-+.=-+.......++..+..+...+...+...
T Consensus 21 ~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 21 EEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcccC
Q 013502 293 QAHLELLKRTNVL 305 (442)
Q Consensus 293 q~qLdkLrktNV~ 305 (442)
...+..++...-|
T Consensus 101 e~~l~~~~~Y~~f 113 (126)
T PF13863_consen 101 EEKLEEYKKYEEF 113 (126)
T ss_pred HHHHHHHHHHHHH
No 416
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.33 E-value=3.5e+02 Score=28.49 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 262 ERYWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 262 e~~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
.+|-..+|+-+..+.++++.+..+..
T Consensus 183 ~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 183 AKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 35667777777777777666655443
No 417
>smart00338 BRLZ basic region leucin zipper.
Probab=48.02 E-value=76 Score=24.75 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
.|+.++..|+.+...|..++..++.+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 418
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.90 E-value=2.7e+02 Score=26.94 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (442)
Q Consensus 245 ~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q 295 (442)
.....++.+...+...-.++-..+..++.++.++...+..+.+++..++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555556666666666666666666666666654
No 419
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.81 E-value=6.1 Score=44.53 Aligned_cols=100 Identities=23% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL--------------KIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~--------------~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
++-+...++.|+..|..+++.... ...+.+++...+. .+..+...+...+.+|+.++.++..+
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~~~---~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~ 386 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDIGL---EFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKE 386 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667777777777664321 1112333322222 23444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 247 l~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
+..++.....++ .....++++..-...|++.+.+++.
T Consensus 387 ~~~l~~~~~~~~-------~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 387 IEELEASLEALK-------KLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444332222 1222344455555555555554443
No 420
>PF13166 AAA_13: AAA domain
Probab=47.51 E-value=4.4e+02 Score=29.35 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 013502 344 QACLLLHTMC 353 (442)
Q Consensus 344 Q~~LLL~tla 353 (442)
.++=+|..+.
T Consensus 547 ~v~~~l~~~~ 556 (712)
T PF13166_consen 547 GVASRLKEEI 556 (712)
T ss_pred HHHHHHHHHh
Confidence 4455554444
No 421
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.39 E-value=1.1e+02 Score=34.89 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
.|+.++|...++|..+|+++-...+++.++|...+.|..+|+-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4555555556666666666666666666666655555555543
No 422
>PLN02678 seryl-tRNA synthetase
Probab=47.30 E-value=1.5e+02 Score=32.26 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.++-+.|.++|..+|.+..++++++.++-.
T Consensus 77 ~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 77 IAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666666555443
No 423
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.25 E-value=88 Score=24.38 Aligned_cols=29 Identities=34% Similarity=0.538 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
.|+..+..|+.+...|..++..|+.+...
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333
No 424
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.18 E-value=1.3e+02 Score=31.74 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHh
Q 013502 189 TRDIEAYEACLQRLE 203 (442)
Q Consensus 189 ~~E~d~Y~~fL~~Le 203 (442)
.+..+.|+.+++.+.
T Consensus 214 ~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 214 IRSLEYFENLYDAFG 228 (406)
T ss_dssp ---HHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHhcC
Confidence 456677888888773
No 425
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.17 E-value=68 Score=28.22 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
++++.+.+.++++.+++...+..++++.++
T Consensus 85 l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 85 LEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443
No 426
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=47.10 E-value=3.3e+02 Score=27.84 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013502 184 EVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 184 qle~~~~E~d~Y~~fL~ 200 (442)
+|+-+.-|-+.-.+-|+
T Consensus 60 RL~HLS~EEK~~RrKLK 76 (292)
T KOG4005|consen 60 RLDHLSWEEKVQRRKLK 76 (292)
T ss_pred hhcccCHHHHHHHHHHH
Confidence 34444444444444443
No 427
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.85 E-value=2.2e+02 Score=25.58 Aligned_cols=9 Identities=22% Similarity=0.213 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 013502 232 AIEETEKQN 240 (442)
Q Consensus 232 eLeeLEkE~ 240 (442)
.+.+|+.+.
T Consensus 59 r~~eLqaki 67 (107)
T PF09304_consen 59 RIAELQAKI 67 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 428
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.69 E-value=3.2e+02 Score=27.49 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 013502 210 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF----------QLIAHQ 279 (442)
Q Consensus 210 ~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~----------qL~~~~ 279 (442)
++..++..++...+.+...+..++..++.+.. ..+++.++.+....+.+-+...++|...+. ++.+.+
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~ 151 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENAR 151 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 013502 280 EERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLr 300 (442)
.+.....++++.++..+..++
T Consensus 152 ~~~~~a~~~~~~a~~~~~~~~ 172 (331)
T PRK03598 152 SSRDQAQATLKSAQDKLSQYR 172 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 429
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=46.61 E-value=1.4e+02 Score=30.56 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHH--HHHHHHHHHHHHHHHhc
Q 013502 185 VDD--VTRDIEAYEACLQRLEG 204 (442)
Q Consensus 185 le~--~~~E~d~Y~~fL~~Le~ 204 (442)
+++ +++|+|.-.+.+.-..+
T Consensus 73 FeD~~vEkEvdvRkr~~r~Fnk 94 (314)
T COG5220 73 FEDITVEKEVDVRKRLLRAFNK 94 (314)
T ss_pred cchhhhhhhhhHHHHHHHHhcc
Confidence 444 46777777776666554
No 430
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=46.59 E-value=2e+02 Score=28.39 Aligned_cols=37 Identities=11% Similarity=0.268 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.++...|+...+.|.+++..++.+...++.|...+.+
T Consensus 37 ~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~ 73 (228)
T PRK06800 37 QKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLA 73 (228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333
No 431
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.59 E-value=2.3e+02 Score=25.85 Aligned_cols=37 Identities=8% Similarity=0.174 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.=.+.+..+.++..+..+.+++.....-....|+.|+
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666666666666666666666655565554
No 432
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.27 E-value=3.9e+02 Score=28.33 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
.+...|+.+++-..-++.+++.+-.+.......=...-..|+...-...+...++..|..+++..+.+++
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666667666666555444444444455555555555666666666666666666655
No 433
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.18 E-value=43 Score=26.40 Aligned_cols=30 Identities=30% Similarity=0.415 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
.+.+++.+++++.+++.++..+++.+.+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555554444
No 434
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.07 E-value=1.5e+02 Score=31.66 Aligned_cols=72 Identities=25% Similarity=0.311 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~-~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
|.+++ |+++...+..+.+.-..-.+.+.++.... ...+ +..++.++-+++.++|+++|++..++++++.++-
T Consensus 28 d~i~~-ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 28 DELLE-LDEERRELQTELEELQAERNALSKEIGQAKRKGE----DAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 55665555555555554444443321100 0000 1122334444555555555555555555555443
No 435
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=46.06 E-value=1.8e+02 Score=29.70 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
.+.+|..+|+++.+.+..++..|..|.
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e~ 244 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAEL 244 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445555555555555555555555443
No 436
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.92 E-value=78 Score=25.09 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQN 240 (442)
Q Consensus 226 E~~L~~eLeeLEkE~ 240 (442)
..+|.++++.++++.
T Consensus 6 ~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 6 IERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 437
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=45.49 E-value=1.5e+02 Score=27.04 Aligned_cols=32 Identities=34% Similarity=0.459 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 211 s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
++++-.+.+.+|++|-+...+++++.-++.++
T Consensus 98 see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ 129 (144)
T PF11221_consen 98 SEEEQLKRIKELEEENEEAEEELQEAVKEAEE 129 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444444433
No 438
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.30 E-value=2.7e+02 Score=29.35 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899998888888877776654
No 439
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=45.22 E-value=7.5 Score=34.17 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
|+.+.-++.+++.+||.+...+..++.+++.+...++
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe 40 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEELEELE 40 (118)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555554444443
No 440
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=45.18 E-value=1.9e+02 Score=33.05 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.||.....+|--|..-|.-||+...+-...+++.|+++++|+++++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666666555555555555555555555443
No 441
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.95 E-value=4.6e+02 Score=28.78 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 013502 149 ITVLKRAFEIA 159 (442)
Q Consensus 149 i~~l~~lFdIL 159 (442)
+.-+..+|+=+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455555444
No 442
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.92 E-value=3.4e+02 Score=30.43 Aligned_cols=60 Identities=20% Similarity=0.396 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhchhcccCCHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 013502 190 RDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIE----ETEKQNAEVNAELKELE 251 (442)
Q Consensus 190 ~E~d~Y~~fL~~Le~e~~~~~s~e~l~---~El~~LE~EE~~L~~eLe----eLEkE~~~l~~El~~le 251 (442)
.+.+.|+.-++.|+... .-+..++. +++++|..|-+...+.++ +++...+++.+++++++
T Consensus 191 ~~~~~yk~~v~~i~~~~--ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKD--IKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred hhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555666666665532 22344443 344444444443333333 34444444444444444
No 443
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.78 E-value=3.8e+02 Score=30.02 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEE 235 (442)
Q Consensus 223 E~EE~~L~~eLee 235 (442)
.+|.++|.++++.
T Consensus 218 ~~e~d~lk~e~~~ 230 (555)
T TIGR03545 218 KEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 444
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=44.64 E-value=1.6e+02 Score=33.02 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChh
Q 013502 261 EERYWQEFNNFQFQLIAHQEERDAISS---KIEV-SQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWD 336 (442)
Q Consensus 261 Ee~~W~e~N~~q~qL~~~~eE~~sl~~---q~~~-~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~ 336 (442)
-+-+...|+.+++.|..|......+.+ |+.- +.-.-..+||.|.+|-.|++=+ ||..=---....+=.
T Consensus 70 ~q~s~d~y~kYKLKLeR~~~Kk~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~vl~--------n~~vfFnKkrEaek~ 141 (574)
T PF07462_consen 70 IQVSLDHYGKYKLKLERLLKKKNKISNSKEQIKKLTILKNKLERRQNLLNNPTSVLK--------NFTVFFNKKREAEKK 141 (574)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH--------HHHHHHhhhhHHHHH
Confidence 344667788888888888777654432 2221 1111223578899998877643 222110111245778
Q ss_pred hHHHHHHHHHHHHHHH
Q 013502 337 EINAAWGQACLLLHTM 352 (442)
Q Consensus 337 EINAAwGQ~~LLL~tl 352 (442)
||--++--+=.||-.-
T Consensus 142 eveNtlkNt~iLlkyY 157 (574)
T PF07462_consen 142 EVENTLKNTEILLKYY 157 (574)
T ss_pred HHHHHhhhHHHHHHHH
Confidence 8888888886666543
No 445
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=44.33 E-value=1.9e+02 Score=24.08 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--EADFLKEKLKIEEEERKLEAAIEETEKQNA-EVNAELKELEL 252 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s--~e~l~~El~~LE~EE~~L~~eLeeLEkE~~-~l~~El~~le~ 252 (442)
+++.+....+..+.-......-...++......-. ...+..-...|++++..|..+|+..+.+.. .+..++..++.
T Consensus 8 ~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 8 LLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444432211000 011111122355556666666655443332 23334444433
No 446
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.01 E-value=4.7e+02 Score=28.70 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 013502 239 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER-DAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 239 E~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~-~sl~~q~~~~q~qLdkLrkt 302 (442)
+..++.+++++|......+..+-...-.+||..+..-.+...+. .++.-.....+..-+.|+..
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~Lktq 238 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQ 238 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455566666655444322222 22333333333344446553
No 447
>PRK12765 flagellar capping protein; Provisional
Probab=43.90 E-value=1.1e+02 Score=34.20 Aligned_cols=55 Identities=5% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 234 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 234 eeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~ 291 (442)
+-+.++.+.|+++++.++ .+++..+++|++.|+.+..-+..+......|..++..
T Consensus 535 ~~l~~~~~~l~~~~~~~~---~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~ 589 (595)
T PRK12765 535 ESLTNEIKSLTTSKESTQ---ELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINA 589 (595)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555555544444 4678888999999998888777766666555555543
No 448
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=43.69 E-value=3.4e+02 Score=27.02 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 278 HQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 278 ~~eE~~sl~~q~~~~q~qLd 297 (442)
.+.+..+++++++.++.+|+
T Consensus 184 ~~~~~~~~~~~l~~a~~~l~ 203 (327)
T TIGR02971 184 AQAEVKSALEAVQQAEALLE 203 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666655554
No 449
>PRK10698 phage shock protein PspA; Provisional
Probab=43.53 E-value=3.3e+02 Score=26.70 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 246 ELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 246 El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
.+..++.+.......-.++-..+..++..+.+...++..|.+++..+..+.
T Consensus 100 ~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 100 LIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555666677777777778878777776653
No 450
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=43.34 E-value=2.6e+02 Score=28.84 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+.+|..++.....|...... ..+...++....+.+.++|+.+++.++++.+.+..++.+++......
T Consensus 1 l~el~~~~~~~~~~~r~l~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (378)
T TIGR01554 1 LSELKEQREEIVAEIRSLLD-------------KAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEET 67 (378)
T ss_pred ChhHHHHHHHHHHHHHHHHh-------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred -----------HHHHHHHHHHHHHH
Q 013502 258 -----------KELEERYWQEFNNF 271 (442)
Q Consensus 258 -----------~eeEe~~W~e~N~~ 271 (442)
..+...+.+.|..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (378)
T TIGR01554 68 KRNAGGGNDSGESQDEDRVRAFIKG 92 (378)
T ss_pred ccCCCCCCcchhhhhHHHHHHHHHH
No 451
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.09 E-value=1.7e+02 Score=23.33 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.+.|.+++....+..+.|..++.|...+.
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455555566666666666666555443
No 452
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.92 E-value=3e+02 Score=26.15 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=6.6
Q ss_pred HHHHHHhhcCC
Q 013502 152 LKRAFEIATSQ 162 (442)
Q Consensus 152 l~~lFdILSs~ 162 (442)
++++|+++.++
T Consensus 3 f~Rl~~~~~a~ 13 (221)
T PF04012_consen 3 FKRLKTLVKAN 13 (221)
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 453
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=42.82 E-value=3.8e+02 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.188 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
++.++++++.+.+.-+.-++.++
T Consensus 84 ~~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 84 YELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555443
No 454
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=42.75 E-value=2e+02 Score=25.77 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 245 AELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (442)
Q Consensus 245 ~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~ 278 (442)
+.++..+.....+.++..+|+++.++-+.+...+
T Consensus 21 ~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~L 54 (125)
T PF03245_consen 21 AAIEDMQQRQQALAALDAKYTKELADAKAEIDRL 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445555555677888888888887776653333
No 455
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=42.37 E-value=8.3 Score=43.45 Aligned_cols=6 Identities=33% Similarity=0.517 Sum_probs=0.0
Q ss_pred HHHHHH
Q 013502 181 LDKEVD 186 (442)
Q Consensus 181 Ld~qle 186 (442)
|.++.+
T Consensus 279 L~q~~~ 284 (713)
T PF05622_consen 279 LRQENE 284 (713)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 444333
No 456
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.35 E-value=85 Score=34.72 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
.-|.++++-|.+++ +.|...++.+
T Consensus 337 ~dL~~R~K~Q~q~~----~~~r~ri~~i 360 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEV----KQHRIRINAI 360 (508)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44555555555555 4444444443
No 457
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=42.04 E-value=1.2e+02 Score=26.65 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 212 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 212 ~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e-~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
..++...+.-.|+|-.-|.+.|.++|++.+.+..||..++.+.-.++. .-|-. -..-.-.-..++.++.++..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 355665665567777778888999999999999988888765543332 11100 00000011235667777777887
Q ss_pred HHHHHHHHHhhcc
Q 013502 291 VSQAHLELLKRTN 303 (442)
Q Consensus 291 ~~q~qLdkLrktN 303 (442)
-....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 7777777776555
No 458
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=41.85 E-value=4.4e+02 Score=27.70 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 222 LE~EE~~L~~eLee-LEkE~~~l~~El~~le~e~~~L 257 (442)
+..+|++|.+.++. -+++.++++.++..|+.-+.++
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45556666655543 2455556666666665544444
No 459
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=41.81 E-value=1.7e+02 Score=26.49 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 275 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL 275 (442)
+|....-++...++-+......+..+|++.+..+..+..++
T Consensus 83 ~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 83 ELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 33333334444444445555556666666666655555443
No 460
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=41.81 E-value=2.1e+02 Score=27.98 Aligned_cols=37 Identities=41% Similarity=0.443 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeE 261 (442)
+...+..++.+.+++.+.+++.++.++.+..+++..+
T Consensus 71 q~~~~q~e~~~~lk~~a~~~E~lk~lE~~kae~k~~~ 107 (192)
T COG3334 71 QLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLE 107 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666777777777776544444333
No 461
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=41.77 E-value=2.6e+02 Score=26.04 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 233 IEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 233 LeeLEkE~~~l~~El~~le~e~ 254 (442)
|-.+-...+.+..++.+|..+.
T Consensus 68 lyallRrqaivRRQ~~~L~Lq~ 89 (147)
T PRK15335 68 IYTLLRKQSIVRRQIKDLELQI 89 (147)
T ss_pred HHHHHHHHHHHHHHHHhccchh
Confidence 3334444444444444444433
No 462
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=41.68 E-value=5e+02 Score=28.32 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAE-VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~-l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~ 291 (442)
+.+.+|+.++.+-...|+...+.|+.+... +.==.+.|++|.-+.+.+|++.-....-.|.+...+..|+.+++.++.|
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaY 342 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAY 342 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013502 292 SQAHLEL 298 (442)
Q Consensus 292 ~q~qLdk 298 (442)
....-.|
T Consensus 343 QsyERaR 349 (455)
T KOG3850|consen 343 QSYERAR 349 (455)
T ss_pred HHHHHHH
No 463
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=41.50 E-value=2.5e+02 Score=24.68 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
|...|+-+|.|-+-+..-|.+++.+.
T Consensus 6 LR~qLqFvEEEa~LlRRkl~ele~eN 31 (96)
T PF11365_consen 6 LRRQLQFVEEEAELLRRKLSELEDEN 31 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333333
No 464
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.47 E-value=2.2e+02 Score=24.20 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 235 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 235 eLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
.++.-...|+.-+..|+.-..+.-+-+... +.++-++..+...+..|..+++.+....++|+.+|
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
No 465
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=41.47 E-value=2e+02 Score=23.75 Aligned_cols=26 Identities=23% Similarity=0.526 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 272 QFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
...++.-+.+++.+..|+. +..||-|
T Consensus 52 ~~~~L~~~~~r~~l~vQlt--~EkLdel 77 (80)
T PF11488_consen 52 EVKMLETQDPRDELNVQLT--QEKLDEL 77 (80)
T ss_pred HHHHHHHhchhhHHhHHHH--HHhHHHH
Confidence 3444445555555555543 4445554
No 466
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=41.37 E-value=2.6e+02 Score=26.96 Aligned_cols=7 Identities=57% Similarity=0.800 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 013502 246 ELKELEL 252 (442)
Q Consensus 246 El~~le~ 252 (442)
||++++.
T Consensus 128 eI~~L~~ 134 (171)
T PF04799_consen 128 EIKQLEK 134 (171)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 467
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.22 E-value=3.5e+02 Score=26.34 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKS-KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~-~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
|+.....+.++|..+.++.+.++.+.+..+.+. ..|..+|. -|+++-.--.+ .+-....+++++...+.+...
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~-~W~~~v~kn~e---ie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQ-RWKELVSKNLE---IEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554444333322 34555553 45555333332 233333344444444444333
No 468
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=41.18 E-value=3.2e+02 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
++.+|-++|++.-+...+.++++.+-...
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~lQ~~ 36 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKLQDK 36 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444333
No 469
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.82 E-value=3.5e+02 Score=26.34 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 170 CLECMRVLSDKLDKEVDDVTRDIEA 194 (442)
Q Consensus 170 C~ECtd~Lle~Ld~qle~~~~E~d~ 194 (442)
|..=.+.|-+.+..+...+..+++.
T Consensus 16 ~~~~i~~L~~q~~~~~~~i~~~r~~ 40 (206)
T PF14988_consen 16 KEKKIEKLWKQYIQQLEEIQRERQE 40 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666666665
No 470
>PRK10698 phage shock protein PspA; Provisional
Probab=40.79 E-value=3.6e+02 Score=26.41 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013502 173 CMRVLSDKLDKEVDDVTRDIE 193 (442)
Q Consensus 173 Ctd~Lle~Ld~qle~~~~E~d 193 (442)
=.+.++..|...+..+.....
T Consensus 28 ~l~q~i~em~~~l~~~r~alA 48 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSA 48 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555433333
No 471
>PRK14127 cell division protein GpsB; Provisional
Probab=40.77 E-value=1.1e+02 Score=27.36 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK-----------------SKRFKELEERYW 265 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e-----------------~~~L~eeEe~~W 265 (442)
+.+.++...+..|..+|..++..++.+.+++..++...+.. ++++..+|+..+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
No 472
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=40.68 E-value=3.5e+02 Score=32.72 Aligned_cols=9 Identities=44% Similarity=0.693 Sum_probs=5.0
Q ss_pred CCcceeecC
Q 013502 370 GSYPRIMDS 378 (442)
Q Consensus 370 GS~SkI~~~ 378 (442)
||||++.+.
T Consensus 662 ~~~~~~~~~ 670 (1021)
T PTZ00266 662 GNFSRGKDS 670 (1021)
T ss_pred ccccccccc
Confidence 456666543
No 473
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=40.64 E-value=5.7e+02 Score=28.68 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
+.+-..+..+++++..+.+.+..-...+..+ .+.+.+.+...|++.+.+..+|+++......++.|+.
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~~f~~E------c~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAVHFYAE------CRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666444444322 2233444444444455555555555555555555444
No 474
>PRK14160 heat shock protein GrpE; Provisional
Probab=40.55 E-value=3.7e+02 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.133 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCc
Q 013502 338 INAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSY 372 (442)
Q Consensus 338 INAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~ 372 (442)
|=.++-.+.=-|..+-.++|++ + +-|.|-|
T Consensus 137 l~~Gv~mi~kql~~vL~k~GVe---~--I~~~G~F 166 (211)
T PRK14160 137 LKKGIEMTVKQFKTSLEKLGVE---E--ISTEGEF 166 (211)
T ss_pred HHHHHHHHHHHHHHHHHHCCCE---E--eCCCCCC
Confidence 4456666666666666677664 3 4455543
No 475
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.24 E-value=2.8e+02 Score=24.99 Aligned_cols=72 Identities=18% Similarity=0.253 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
+...++.-++++.++-.|...|...-+..-.+.. ....-.++++.+.+++.|+.|++...=++....+++.-
T Consensus 32 ~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk--------~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~n 103 (114)
T KOG3501|consen 32 AKKISELAKKELEDVGDEKAVYTSVGRMFMLSDK--------AAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQN 103 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcH--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777777777665554422111 11112345566666666777766666555555555443
No 476
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.24 E-value=2.5e+02 Score=24.42 Aligned_cols=7 Identities=57% Similarity=0.520 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 013502 197 ACLQRLE 203 (442)
Q Consensus 197 ~fL~~Le 203 (442)
.=+..++
T Consensus 49 ~Rl~~lE 55 (106)
T PF10805_consen 49 RRLQALE 55 (106)
T ss_pred HHHHHHH
Confidence 3333333
No 477
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=40.10 E-value=4.8e+02 Score=27.63 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
|+.|...++..|..||++.+-+-.|.+++.
T Consensus 31 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~ 60 (328)
T PF15369_consen 31 LKAEQESFEKKIRQLEEQNELIIKEREDLQ 60 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344444444555555555544444444443
No 478
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=40.02 E-value=1.8e+02 Score=27.65 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-e
Q 013502 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA-F 309 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~-F 309 (442)
.++...+.+.++.++++...+.+.++.+.+-++-+-.-.++... +.+...++++++.++.+|+.++...-...+ .
T Consensus 16 ~~~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 91 (265)
T TIGR00999 16 PELAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESA----EYALEEAQAEVQAAKSELRSAREAKDGSYVEV 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCccCCCeEEE
Q ss_pred eeeecCCeeeec
Q 013502 310 PIWHDGEFGTIN 321 (442)
Q Consensus 310 ~I~hdG~fGTIN 321 (442)
.=.+||....++
T Consensus 92 ~AP~dG~V~~~~ 103 (265)
T TIGR00999 92 RSPFDGYITQKS 103 (265)
T ss_pred ECCCCeEEEEEE
No 479
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.89 E-value=5.6e+02 Score=28.37 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL----KSK 255 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~----e~~ 255 (442)
.+-.+.++...+.+....-+..+ .....+...++.+...+..++..++.+.+++...++..+. +..
T Consensus 33 ~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~ 102 (475)
T PRK10361 33 EQLAEREEMVAELSAAKQQITQS----------EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhh
Q 013502 256 RFKELEERYWQEFNNFQFQLIAHQEER------DAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 256 ~L~eeEe~~W~e~N~~q~qL~~~~eE~------~sl~~q~~~~q~qLdkLrk 301 (442)
.|++.++++-.+|.++-.+.++...+. .+|..-+.=.+.+|+..++
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~ 154 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRR 154 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 480
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=39.86 E-value=4.1e+02 Score=26.82 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRL--EGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~L--e~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
.+.+.++.+++.+..-|..|...|..+ ............+.+++-.+.+=+.=|..-+++++.=.+.++..+.+++..
T Consensus 9 ~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~~ 88 (281)
T PF12018_consen 9 ATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEAQ 88 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 013502 254 SKRFKE 259 (442)
Q Consensus 254 ~~~L~e 259 (442)
.++|.+
T Consensus 89 l~~L~~ 94 (281)
T PF12018_consen 89 LEKLKE 94 (281)
T ss_pred HHHHHH
No 481
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=39.72 E-value=6.7e+02 Score=29.25 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQ----RLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~----~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..|..++.++..|||....-|+ -+..+... .-+....|...|.+.-..|+.+|.+..+..+.+..++...+...
T Consensus 474 ~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~--ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQLSARLIQQEVGR--AREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 013502 255 KRFKELEERYWQEFNNFQFQLI-AHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 255 ~~L~eeEe~~W~e~N~~q~qL~-~~~eE~~sl~~q~~~~q~qLdk 298 (442)
..-.+.-..+=+++..-+.... .+++...-++.++.--...+++
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~ 596 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEK 596 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=39.72 E-value=3.9e+02 Score=26.49 Aligned_cols=125 Identities=21% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s-~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
+..+-+.-|.+++.+.+-.-.-..-|.+.+....-..+ ...+..++..+-.....|.+.-+.++...+..+.+|+.+..
T Consensus 72 Ak~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltd 151 (205)
T KOG1003|consen 72 AKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTD 151 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 253 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 253 e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+.+.-+--=+.+=+....++.+.-.+++.+.....+|..++..||.
T Consensus 152 KLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 152 KLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
No 483
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.58 E-value=4.4e+02 Score=27.05 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE------- 246 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~E------- 246 (442)
.|.-+..+.++..+.+.|++....-+..+... -.+..++..+++.|.++|.++|.+++....+-.+-
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k------~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA 109 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSK------IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 247 ----------------------------------------LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 286 (442)
Q Consensus 247 ----------------------------------------l~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~ 286 (442)
|+.++.+...|++.+...=..++.+.--+-+++..+++|+
T Consensus 110 mq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~ 189 (265)
T COG3883 110 MQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLN 189 (265)
T ss_pred HHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q 013502 287 SKIEVSQAHLELLK 300 (442)
Q Consensus 287 ~q~~~~q~qLdkLr 300 (442)
.+...-..-+..|.
T Consensus 190 ~qk~e~~~l~~~~a 203 (265)
T COG3883 190 SQKAEKNALIAALA 203 (265)
T ss_pred HHHHHHHHHHHHHH
No 484
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=39.55 E-value=2.6e+02 Score=27.95 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
....+..++.+......++..+.......+....+.=...-.++.++...+.+....++++..++.++++.+.
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~ 125 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQREVDRYRS 125 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=39.50 E-value=52 Score=29.59 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHHh
Q 013502 227 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELLK 300 (442)
Q Consensus 227 ~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~--~~eE~~sl~~q----~~~~q~qLdkLr 300 (442)
+++-..+..+|.+.-.+-+|+..++.....+-++....--+-..+...|.+ +++.--.-+.. ......+|.+|
T Consensus 4 keiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l- 82 (114)
T COG4467 4 KEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL- 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH-
Q ss_pred hcccCCCceeeeecCCee
Q 013502 301 RTNVLNDAFPIWHDGEFG 318 (442)
Q Consensus 301 ktNV~Nd~F~I~hdG~fG 318 (442)
|++-|||.+ -+||
T Consensus 83 ----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 ----YQEGFHICN-VHYG 95 (114)
T ss_pred ----HhccchhHH-HHhc
No 486
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=39.42 E-value=5.3e+02 Score=30.92 Aligned_cols=119 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 168 PLCLECMRVLSDKLDKEVDDVTRDIEAYE-ACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 168 PLC~ECtd~Lle~Ld~qle~~~~E~d~Y~-~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
|+-.|=...|--+.+.+|+-.-+|+.... ..|+.++ ++-+....+.+|.+-+.+..+++++.++.+++..|
T Consensus 953 eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~e--------Dea~aRh~kefE~~mrdhrselEe~kKe~eaiine 1024 (1424)
T KOG4572|consen 953 EISEEDKKKLHAEIDAELEKEFAELIELEQKALECKE--------DEAFARHEKEFEIEMRDHRSELEEKKKELEAIINE 1024 (1424)
T ss_pred cccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 247 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 247 l~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+++++.+.-+..+-| .-..++.....-+-+..++..+..-....|+.+
T Consensus 1025 iee~eaeIiQekE~e------l~e~efka~d~Sd~r~kie~efAa~eaemdeik 1072 (1424)
T KOG4572|consen 1025 IEELEAEIIQEKEGE------LIEDEFKALDESDPRAKIEDEFAAIEAEMDEIK 1072 (1424)
T ss_pred HHHHHHHHHhcccch------HHHHHhhhccccCcchhHHHHHHHHHhhhhhhh
No 487
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.21 E-value=4.4e+02 Score=27.01 Aligned_cols=145 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCCcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHH
Q 013502 149 ITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERK 228 (442)
Q Consensus 149 i~~l~~lFdILSs~s~IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~ 228 (442)
+-++.-.+=|+|. -+-.-+=.+=....++.=|.++..++++....+.-++.|..+ -+++..+...+.++-.+
T Consensus 6 ~~a~~~s~v~~s~--~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~q------i~~~~~k~~~~~~~i~~ 77 (265)
T COG3883 6 LLAVLLSLVIIST--AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQ------IEEIQSKIDELQKEIDQ 77 (265)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------HHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRF----------------------------------------KELEERYWQEF 268 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L----------------------------------------~eeEe~~W~e~ 268 (442)
+.++|+.++++.+++.+.|.+.+.-...- ...=+.+-.+-
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk 157 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDK 157 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..++-....+.++...+.+-..-...+++.|..
T Consensus 158 ~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~ 190 (265)
T COG3883 158 KSLEEKQAALEDKLETLVALQNELETQLNSLNS 190 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.06 E-value=52 Score=31.32 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
|+-|+.+|.++.+..--.+.-| .|++.|..+-++|+.|+.+|..|. .+.+.+.....+
T Consensus 2 LeD~EsklN~AIERnalLE~EL-----------------dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~ 59 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-----------------DEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRK 59 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHCH---------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcc
No 489
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=38.91 E-value=2.1e+02 Score=23.09 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
.|+.-|+.-.+-++....-|+++.. +.-.+...+..-+..-..|.++|+.|+++.+++..+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~------~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKS------ANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 490
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.61 E-value=3.2e+02 Score=25.24 Aligned_cols=72 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktN 303 (442)
++..+....+.....+..+......++..-...+..-......+..+..++..+.+....-+..+++|++-|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 491
>PF09321 DUF1978: Domain of unknown function (DUF1978); InterPro: IPR015400 This domain is found in various hypothetical proteins produced by the bacterium Chlamydia pneumoniae. Their exact function has not, as yet, been identified. This entry includes the IncA proteins
Probab=38.56 E-value=4.4e+02 Score=26.75 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 013502 185 VDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEE--------ERKLEAAIEETEKQNA-EVNAELKELELKSK 255 (442)
Q Consensus 185 le~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~E--------E~~L~~eLeeLEkE~~-~l~~El~~le~e~~ 255 (442)
...+++.-+.|.++++++-. .++.+...+|++- ....+.+.+..-.... .|+.-...++.+..
T Consensus 93 qk~l~d~~~~~~~~~~~~~~--------qE~~ra~eRl~~LqalYp~v~v~~~e~~~q~t~~~~~~dLe~~~e~IE~~y~ 164 (241)
T PF09321_consen 93 QKKLKDAEKRRLRCLQDFYD--------QEIERAQERLRELQALYPEVSVSEVETERQETVSSNASDLEKAYENIEEEYQ 164 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHhccccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 256 RFKELEERYWQEFNNFQ----------FQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 256 ~L~eeEe~~W~e~N~~q----------~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..-++.+-||++.-... +-+.++++-+++|+..+.....+|+.++.
T Consensus 165 ~cv~eQe~YWke~e~~E~Efre~~~k~~s~ee~~~~l~~Le~~l~~~~~~L~~~e~ 220 (241)
T PF09321_consen 165 QCVREQEDYWKEEEKKEAEFREEGGKVLSLEEVQEGLQSLEDLLEAWSKQLDKAEK 220 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=38.38 E-value=2.9e+02 Score=31.05 Aligned_cols=93 Identities=14% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
.++.++...+.+..+++...+..+..-...+...+.....+...+-++=..+-.+....+.+ ++-......+|...
T Consensus 34 ~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k----~~ll~~f~~~f~Ls 109 (618)
T PF06419_consen 34 QEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELK----KKLLDAFLERFTLS 109 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCCC
Q ss_pred HHHHHHHhhc-ccCCCce
Q 013502 293 QAHLELLKRT-NVLNDAF 309 (442)
Q Consensus 293 q~qLdkLrkt-NV~Nd~F 309 (442)
..+.+.|... ...|+.|
T Consensus 110 ~~E~~~L~~~~~~v~~~F 127 (618)
T PF06419_consen 110 EEEEDALTSGEEPVDDEF 127 (618)
T ss_pred HHHHHHHhCCCCCCCHHH
No 493
>PRK10722 hypothetical protein; Provisional
Probab=38.37 E-value=1.2e+02 Score=30.75 Aligned_cols=46 Identities=20% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEER---KL----EAAIEETEKQNAEVNAELKELELKSKRFKELEERY 264 (442)
Q Consensus 219 l~~LE~EE~---~L----~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~ 264 (442)
...|.+|.. +| +.+|+.+-++...+..++.....++++|.+.|.++
T Consensus 157 ~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 157 QLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=38.30 E-value=5.2e+02 Score=27.55 Aligned_cols=126 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s-~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
+-++..|+..+++++.-...+..+|............ ..++..++.+.......-...+.+.+.-.+.....+...-.+
T Consensus 254 ~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~~~~ 333 (412)
T PF04108_consen 254 PDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAYIDE 333 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 254 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 254 ~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
...|...=.+|-..|..+-.++..-+.-++.+..-...+..+|++|.
T Consensus 334 l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~l~ 380 (412)
T PF04108_consen 334 LEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDKLR 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=38.17 E-value=2.9e+02 Score=24.63 Aligned_cols=106 Identities=8% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 174 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 174 td~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
+..-++....+++.+...+..|..-+..-....-++..--.+..=+..|..........+..++.+.+.-...+.+...+
T Consensus 28 a~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 28 AVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 254 SKRFKELEERYWQEFNNFQFQLIAHQ 279 (442)
Q Consensus 254 ~~~L~eeEe~~W~e~N~~q~qL~~~~ 279 (442)
.+.++.+-++...+|..-+.......
T Consensus 108 ~k~~ekLker~~~~~~~~e~r~EQk~ 133 (146)
T PRK07720 108 VKKYEKMKEKKQEMFALEEKAAEMKE 133 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=37.98 E-value=4.8e+02 Score=27.05 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..+++..+..++.+...+..|..-.....+.-.. ......+.+.+..+....+-.+|.+|++++..|..+...+-..-
T Consensus 12 ~~~~~~~~~Dl~~i~e~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~r 89 (289)
T PF05149_consen 12 RRQKQACEEDLERIKEKIQNTDAEDAAQRKRYAA--QRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERR 89 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 255 ~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
-.+.++|++=-..++.|-.-..++...+.....-.+.+..--..+...
T Consensus 90 i~~~eqE~~R~~~~~~Fl~~~~qh~q~L~~~~~n~~~~~~~~~~~~~~ 137 (289)
T PF05149_consen 90 IEMREQEAKRRTAAEEFLQAASQHKQRLRRCEENCDRALSCAESLEEY 137 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.80 E-value=2.3e+02 Score=23.34 Aligned_cols=82 Identities=16% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER---------------YWQEFNNFQFQLIAHQEERDA 284 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~---------------~W~e~N~~q~qL~~~~eE~~s 284 (442)
.++-.+-.++..++..+..+...+..++..++.-...|+..+.. .=.....+..+...++.+...
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 013502 285 ISSKIEVSQAHLELLKR 301 (442)
Q Consensus 285 l~~q~~~~q~qLdkLrk 301 (442)
+..++.+...++..++.
T Consensus 81 l~~~~~~l~~~l~~~~~ 97 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKK 97 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 498
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=37.75 E-value=6.7e+02 Score=28.62 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 173 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 173 Ctd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s-~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
|.-.....+++....++.+.+.|..-+.+|.++-.+-.. .....+...+|+.+...-.+-+...-++.+.+..++.+++
T Consensus 397 ~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q 476 (607)
T KOG0240|consen 397 ILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQ 476 (607)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 252 LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 252 ~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.+....+++..+....++++--......++.++..-+. ....|..|++
T Consensus 477 ~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n--~~sel~sl~~ 524 (607)
T KOG0240|consen 477 EENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN--LKSELQSLQE 524 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--hHHHHHhhhh
No 499
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.74 E-value=3.7e+02 Score=25.69 Aligned_cols=86 Identities=19% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEE-ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 214 ~l~~El~~LE~E-E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
+..++..++..+ +.++...-.++++....+.+....|..+...|+..|...=..-..+..+...+.+....+.......
T Consensus 57 eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 57 EAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 013502 293 QAHLELL 299 (442)
Q Consensus 293 q~qLdkL 299 (442)
...|++.
T Consensus 137 ~~~Le~i 143 (201)
T PF12072_consen 137 QQELEEI 143 (201)
T ss_pred HHHHHHH
No 500
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=37.67 E-value=4e+02 Score=27.69 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 183 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (442)
Q Consensus 183 ~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe 262 (442)
.++..+--|-++++.|....+-. +.|+..|.+.|.+|......-++++. .+..+.++
T Consensus 5 ~~l~~llt~~eaw~~~~~~~~l~-----------------rde~d~l~~~L~~l~~~~~~~d~~~~------~~~~~~~~ 61 (313)
T PF05461_consen 5 EDLQLLLTEDEAWERFVAEAELS-----------------RDEADALREALKELTEDMDSEDKDRS------QKDQQDRE 61 (313)
T ss_pred HHHHHHHhhHHHHHHHHHhccCc-----------------hhhHHHHHHHHHHHHhhhhccccchh------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 263 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (442)
Q Consensus 263 ~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~ 294 (442)
.|.++|..++.+|.++-.++..+..+++....
T Consensus 62 ~FL~~Fp~~k~~Le~~I~kL~~lAd~idk~Hk 93 (313)
T PF05461_consen 62 RFLKEFPQLKEELEEHIRKLRALADEIDKVHK 93 (313)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!