Query 013502
Match_columns 442
No_of_seqs 153 out of 234
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 11:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 4.8E-58 1.7E-62 433.7 10.8 139 277-416 2-143 (210)
2 3vp7_A Vacuolar protein sortin 100.0 4.1E-50 1.4E-54 381.7 9.5 113 302-415 1-134 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.8 2E-17 6.9E-22 139.5 15.0 90 213-302 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.3 1.6E-07 5.4E-12 64.4 1.1 27 142-168 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.7 0.19 6.4E-06 44.9 18.7 21 181-201 4-24 (284)
6 1c1g_A Tropomyosin; contractIl 96.2 0.63 2.2E-05 41.4 19.5 11 184-194 28-38 (284)
7 2v71_A Nuclear distribution pr 96.1 0.7 2.4E-05 43.2 19.5 27 177-203 18-44 (189)
8 3q8t_A Beclin-1; autophagy, AT 96.0 0.35 1.2E-05 40.4 15.1 88 191-291 5-92 (96)
9 2dfs_A Myosin-5A; myosin-V, in 95.6 0.1 3.6E-06 59.5 13.8 26 229-254 982-1007(1080)
10 2efr_A General control protein 95.5 1.3 4.6E-05 40.1 20.1 81 221-301 74-154 (155)
11 3na7_A HP0958; flagellar bioge 95.3 1.6 5.4E-05 41.5 19.0 11 366-376 222-232 (256)
12 3na7_A HP0958; flagellar bioge 95.1 2 6.7E-05 40.9 19.0 36 266-301 150-186 (256)
13 2v71_A Nuclear distribution pr 94.7 2.4 8.4E-05 39.5 17.8 99 188-289 8-111 (189)
14 3hnw_A Uncharacterized protein 94.7 0.43 1.5E-05 42.3 12.1 68 215-282 66-133 (138)
15 3oja_B Anopheles plasmodium-re 94.5 0.25 8.6E-06 51.1 12.0 37 264-300 528-564 (597)
16 3vkg_A Dynein heavy chain, cyt 94.5 0.85 2.9E-05 57.6 18.2 65 230-294 2013-2077(3245)
17 3o0z_A RHO-associated protein 93.4 4.7 0.00016 37.0 17.5 56 242-297 94-153 (168)
18 3vkg_A Dynein heavy chain, cyt 91.7 3.1 0.00011 52.7 17.1 34 171-204 1898-1931(3245)
19 2efr_A General control protein 91.2 8.4 0.00029 34.9 18.6 32 266-297 98-129 (155)
20 3oja_A Leucine-rich immune mol 90.7 4.7 0.00016 40.8 14.8 36 243-278 433-468 (487)
21 2v4h_A NF-kappa-B essential mo 90.1 5.4 0.00018 34.4 12.3 22 278-299 88-109 (110)
22 1ic2_A Tropomyosin alpha chain 89.1 7.4 0.00025 31.0 12.6 36 266-301 41-76 (81)
23 1l8d_A DNA double-strand break 88.6 8.8 0.0003 31.6 12.5 34 264-297 69-102 (112)
24 3u1c_A Tropomyosin alpha-1 cha 88.0 11 0.00036 31.5 15.0 67 178-250 4-70 (101)
25 3s4r_A Vimentin; alpha-helix, 87.8 11 0.00036 31.2 13.0 42 260-301 50-91 (93)
26 3bas_A Myosin heavy chain, str 87.2 11 0.00037 30.7 12.4 66 217-296 14-79 (89)
27 3oja_A Leucine-rich immune mol 86.8 19 0.00065 36.3 16.1 23 181-203 358-380 (487)
28 3bas_A Myosin heavy chain, str 86.3 12 0.00042 30.4 12.3 36 218-253 22-57 (89)
29 3hnw_A Uncharacterized protein 85.7 10 0.00035 33.4 11.8 54 221-274 65-118 (138)
30 3iox_A AGI/II, PA; alpha helix 85.6 12 0.0004 39.6 13.9 93 189-286 8-100 (497)
31 3u1c_A Tropomyosin alpha-1 cha 85.0 16 0.00053 30.4 14.6 71 228-298 27-97 (101)
32 3a7p_A Autophagy protein 16; c 84.9 17 0.00057 33.0 12.8 16 235-250 72-87 (152)
33 3u59_A Tropomyosin beta chain; 84.8 16 0.00053 30.3 14.5 27 222-248 42-68 (101)
34 3u59_A Tropomyosin beta chain; 84.2 16 0.00056 30.1 14.5 66 231-296 30-95 (101)
35 1ic2_A Tropomyosin alpha chain 84.2 12 0.0004 29.9 10.5 65 181-251 4-68 (81)
36 3ghg_A Fibrinogen alpha chain; 83.1 13 0.00043 39.7 12.9 29 344-372 181-213 (562)
37 3ol1_A Vimentin; structural ge 82.5 22 0.00076 30.3 13.4 12 194-205 17-28 (119)
38 3mq9_A Bone marrow stromal ant 82.5 14 0.00048 37.2 12.8 25 231-255 443-467 (471)
39 3s9g_A Protein hexim1; cyclin 81.4 18 0.00061 30.8 10.8 50 209-258 29-78 (104)
40 2zqm_A Prefoldin beta subunit 81.1 11 0.00036 31.1 9.5 35 220-254 73-107 (117)
41 3tnu_B Keratin, type II cytosk 80.5 26 0.0009 30.0 12.1 34 218-251 37-70 (129)
42 3a7p_A Autophagy protein 16; c 80.2 31 0.0011 31.2 12.7 33 218-250 69-101 (152)
43 3ghg_A Fibrinogen alpha chain; 80.0 50 0.0017 35.3 16.1 19 288-306 177-195 (562)
44 3nmd_A CGMP dependent protein 79.7 6 0.0002 31.8 7.0 43 214-256 23-65 (72)
45 2ocy_A RAB guanine nucleotide 78.6 38 0.0013 30.6 16.9 32 270-301 112-143 (154)
46 3tnu_A Keratin, type I cytoske 78.5 24 0.00082 30.4 11.2 26 223-248 44-69 (131)
47 1l8d_A DNA double-strand break 76.3 30 0.001 28.3 12.8 30 270-299 68-97 (112)
48 2v4h_A NF-kappa-B essential mo 76.1 37 0.0013 29.2 12.1 23 281-303 84-106 (110)
49 1ci6_A Transcription factor AT 75.3 10 0.00034 29.1 7.0 37 223-259 22-58 (63)
50 3iv1_A Tumor susceptibility ge 74.8 26 0.00089 28.4 9.6 30 228-257 43-72 (78)
51 3ajw_A Flagellar FLIJ protein; 74.4 38 0.0013 28.5 13.2 55 219-273 76-130 (150)
52 3cvf_A Homer-3, homer protein 73.6 29 0.001 28.1 9.6 39 220-258 16-54 (79)
53 1fxk_A Prefoldin; archaeal pro 73.5 16 0.00055 29.6 8.4 34 220-253 68-101 (107)
54 3uux_B Mitochondrial division 73.5 33 0.0011 33.2 11.6 73 221-293 153-225 (242)
55 3cve_A Homer protein homolog 1 73.3 34 0.0011 27.4 11.1 42 218-259 8-49 (72)
56 3viq_B Mating-type switching p 73.1 4.5 0.00016 33.4 4.8 45 228-272 5-54 (85)
57 2fup_A Hypothetical protein PA 72.7 24 0.0008 30.2 9.7 114 187-303 11-134 (157)
58 1m1j_C Fibrinogen gamma chain; 72.6 50 0.0017 33.9 13.5 15 331-345 204-218 (409)
59 3mq7_A Bone marrow stromal ant 72.3 49 0.0017 28.8 11.5 24 232-255 72-95 (121)
60 1deq_A Fibrinogen (alpha chain 71.4 97 0.0033 31.8 15.5 41 289-336 181-222 (390)
61 3opc_A Uncharacterized protein 71.1 50 0.0017 28.4 13.5 109 187-301 12-131 (154)
62 2oto_A M protein; helical coil 70.7 55 0.0019 28.7 14.2 59 179-243 25-83 (155)
63 2b5u_A Colicin E3; high resolu 69.9 59 0.002 34.6 13.3 18 234-251 317-334 (551)
64 3mq9_A Bone marrow stromal ant 69.7 94 0.0032 31.1 16.5 31 271-301 441-471 (471)
65 3fpp_A Macrolide-specific effl 69.5 17 0.00059 34.6 8.9 25 276-300 124-148 (341)
66 3ol1_A Vimentin; structural ge 68.8 54 0.0018 27.9 16.4 30 175-204 19-48 (119)
67 3swk_A Vimentin; cytoskeleton, 68.5 46 0.0016 27.0 11.5 37 266-302 49-85 (86)
68 2p22_A Suppressor protein STP2 68.5 52 0.0018 30.2 11.3 78 218-295 50-137 (174)
69 4dk0_A Putative MACA; alpha-ha 68.4 27 0.00093 33.6 10.1 30 272-301 121-150 (369)
70 2i1j_A Moesin; FERM, coiled-co 68.1 2.4 8.1E-05 45.2 2.7 16 188-203 333-348 (575)
71 3o0z_A RHO-associated protein 67.7 75 0.0026 29.1 18.2 67 180-252 10-76 (168)
72 1ik9_A DNA repair protein XRCC 67.4 48 0.0016 31.1 11.1 8 151-158 122-129 (213)
73 3cvf_A Homer-3, homer protein 66.7 48 0.0016 26.9 9.5 35 222-256 4-38 (79)
74 2ve7_A Kinetochore protein HEC 66.6 16 0.00056 35.9 8.2 24 230-253 184-207 (315)
75 1wt6_A Myotonin-protein kinase 65.1 25 0.00086 28.8 7.5 39 218-256 32-70 (81)
76 2v66_B Nuclear distribution pr 65.1 66 0.0023 27.6 12.4 85 179-268 6-90 (111)
77 2v66_B Nuclear distribution pr 65.0 66 0.0023 27.6 15.7 23 230-252 41-63 (111)
78 2w83_C C-JUN-amino-terminal ki 64.9 55 0.0019 26.5 9.8 40 214-253 34-73 (77)
79 4etp_A Kinesin-like protein KA 64.9 19 0.00064 36.7 8.4 18 366-388 144-161 (403)
80 3ibp_A Chromosome partition pr 64.0 77 0.0026 31.5 12.2 75 178-252 26-104 (302)
81 2e7s_A RAB guanine nucleotide 63.0 39 0.0013 30.0 9.0 14 287-300 117-130 (135)
82 3hhm_B NISH2 P85alpha; PI3KCA, 62.9 77 0.0026 32.0 12.4 61 218-285 199-259 (373)
83 1hjb_A Ccaat/enhancer binding 62.7 23 0.00078 29.1 7.0 36 223-258 35-70 (87)
84 1t2k_D Cyclic-AMP-dependent tr 62.2 23 0.00078 26.6 6.5 34 225-258 23-56 (61)
85 1m1j_B Fibrinogen beta chain; 61.4 1.6E+02 0.0055 30.8 15.3 27 178-204 88-114 (464)
86 2avr_X Adhesion A; antiparalle 61.2 47 0.0016 28.9 9.0 14 284-297 75-88 (119)
87 4etp_A Kinesin-like protein KA 60.6 25 0.00085 35.8 8.4 9 379-387 198-206 (403)
88 3u06_A Protein claret segregat 60.2 23 0.00078 36.3 8.1 31 221-251 7-37 (412)
89 3qne_A Seryl-tRNA synthetase, 59.9 31 0.0011 36.3 9.2 88 216-314 32-121 (485)
90 3jsv_C NF-kappa-B essential mo 59.3 79 0.0027 26.5 10.3 22 279-300 67-88 (94)
91 1wle_A Seryl-tRNA synthetase; 59.2 57 0.002 34.2 11.1 38 216-253 69-106 (501)
92 1ykh_B RNA polymerase II holoe 59.1 83 0.0028 27.3 10.4 69 167-242 49-117 (132)
93 2dq0_A Seryl-tRNA synthetase; 58.6 48 0.0016 34.3 10.2 91 214-313 28-118 (455)
94 2i1j_A Moesin; FERM, coiled-co 58.5 14 0.00048 39.3 6.4 11 149-159 274-284 (575)
95 1yke_B RNA polymerase II holoe 57.1 74 0.0025 28.4 9.9 32 211-242 86-117 (151)
96 2zqm_A Prefoldin beta subunit 56.9 78 0.0027 25.7 11.0 22 221-242 17-38 (117)
97 3lss_A Seryl-tRNA synthetase; 56.3 52 0.0018 34.5 10.1 37 216-252 36-72 (484)
98 2wt7_A Proto-oncogene protein 55.4 34 0.0012 25.9 6.5 32 226-257 25-56 (63)
99 2lw1_A ABC transporter ATP-bin 55.0 56 0.0019 26.2 8.1 23 182-204 21-43 (89)
100 3mq7_A Bone marrow stromal ant 54.1 1.1E+02 0.0038 26.6 13.5 25 228-252 75-99 (121)
101 2l5g_B Putative uncharacterize 53.8 30 0.001 25.1 5.5 29 229-257 7-35 (42)
102 3fpp_A Macrolide-specific effl 52.9 67 0.0023 30.5 9.7 31 268-298 123-153 (341)
103 3nmd_A CGMP dependent protein 52.6 54 0.0019 26.2 7.4 12 290-301 57-68 (72)
104 3qh9_A Liprin-beta-2; coiled-c 52.6 95 0.0032 25.4 10.4 35 221-255 23-57 (81)
105 3qne_A Seryl-tRNA synthetase, 51.7 77 0.0026 33.3 10.5 24 336-359 310-333 (485)
106 1gu4_A CAAT/enhancer binding p 51.6 32 0.0011 27.7 6.0 36 223-258 35-70 (78)
107 4dk0_A Putative MACA; alpha-ha 51.3 72 0.0025 30.6 9.6 32 267-298 123-154 (369)
108 2dq0_A Seryl-tRNA synthetase; 49.9 85 0.0029 32.4 10.4 28 223-250 75-102 (455)
109 1go4_E MAD1 (mitotic arrest de 49.9 28 0.00097 29.4 5.6 30 225-254 13-42 (100)
110 1go4_E MAD1 (mitotic arrest de 49.6 71 0.0024 26.9 8.0 36 165-204 5-40 (100)
111 1ci6_A Transcription factor AT 49.1 39 0.0013 25.7 5.9 30 216-245 29-58 (63)
112 2aze_B Transcription factor E2 48.7 26 0.0009 29.5 5.3 34 226-259 8-41 (106)
113 4emc_A Monopolin complex subun 48.4 70 0.0024 29.9 8.5 32 295-326 80-121 (190)
114 3tnu_B Keratin, type II cytosk 48.4 1.3E+02 0.0043 25.6 13.0 62 223-287 35-96 (129)
115 1fxk_C Protein (prefoldin); ar 48.3 1.2E+02 0.0042 25.4 10.4 81 176-256 15-127 (133)
116 1jnm_A Proto-oncogene C-JUN; B 47.6 23 0.00078 26.8 4.3 32 226-257 24-55 (62)
117 4h22_A Leucine-rich repeat fli 46.9 1.3E+02 0.0046 25.5 9.3 22 228-249 34-55 (103)
118 2pms_C Pneumococcal surface pr 46.8 1.5E+02 0.0051 26.0 10.0 106 180-299 10-122 (125)
119 2yy0_A C-MYC-binding protein; 46.5 31 0.0011 25.7 4.8 27 221-247 23-49 (53)
120 3s9g_A Protein hexim1; cyclin 46.1 1.3E+02 0.0046 25.4 9.1 43 216-258 43-85 (104)
121 3etw_A Adhesin A; antiparallel 45.7 1.2E+02 0.004 26.4 9.0 7 217-223 16-22 (119)
122 1ses_A Seryl-tRNA synthetase; 45.3 1.2E+02 0.0042 30.8 10.7 69 175-249 28-96 (421)
123 4dzn_A Coiled-coil peptide CC- 44.6 45 0.0015 22.5 4.8 19 229-247 7-25 (33)
124 2f1m_A Acriflavine resistance 44.4 1.3E+02 0.0044 27.6 9.9 22 276-297 108-129 (277)
125 1wle_A Seryl-tRNA synthetase; 43.6 96 0.0033 32.6 9.7 29 222-250 121-149 (501)
126 1lwu_C Fibrinogen gamma chain; 43.5 68 0.0023 32.0 8.2 15 331-345 126-140 (323)
127 3ljm_A Coil Ser L9C; de novo d 43.5 38 0.0013 22.5 4.2 24 234-257 4-27 (31)
128 3ter_A Mammalian stromal inter 42.9 1.4E+02 0.0047 26.6 9.1 44 271-314 43-87 (136)
129 1gmj_A ATPase inhibitor; coile 42.8 1.2E+02 0.004 25.0 8.0 11 230-240 57-67 (84)
130 1a93_B MAX protein, coiled coi 42.6 36 0.0012 23.6 4.2 26 226-251 9-34 (34)
131 1f5n_A Interferon-induced guan 42.4 3.4E+02 0.012 28.9 20.4 17 286-302 566-582 (592)
132 4e61_A Protein BIM1; EB1-like 42.4 1.6E+02 0.0055 25.1 11.3 44 230-273 10-53 (106)
133 1hjb_A Ccaat/enhancer binding 42.1 49 0.0017 27.2 5.8 35 214-248 40-74 (87)
134 3u06_A Protein claret segregat 41.3 69 0.0023 32.7 8.1 32 226-257 5-36 (412)
135 2eqb_B RAB guanine nucleotide 40.1 1.7E+02 0.0057 24.6 12.6 15 236-250 45-59 (97)
136 1ses_A Seryl-tRNA synthetase; 39.4 79 0.0027 32.2 8.2 34 216-249 27-60 (421)
137 1f5n_A Interferon-induced guan 39.3 3.8E+02 0.013 28.6 19.3 14 172-185 379-392 (592)
138 1deq_A Fibrinogen (alpha chain 39.1 3.1E+02 0.011 28.1 12.3 18 344-361 184-201 (390)
139 3iox_A AGI/II, PA; alpha helix 39.0 3.8E+02 0.013 28.4 16.3 71 231-301 34-108 (497)
140 1uix_A RHO-associated kinase; 39.0 1.5E+02 0.005 23.7 10.6 32 231-262 4-35 (71)
141 3tnu_A Keratin, type I cytoske 38.8 1.8E+02 0.0062 24.7 13.0 16 228-243 42-57 (131)
142 3i00_A HIP-I, huntingtin-inter 38.7 1.9E+02 0.0065 24.9 11.6 20 175-194 14-33 (120)
143 2yy0_A C-MYC-binding protein; 38.4 49 0.0017 24.7 4.8 27 226-252 21-47 (53)
144 1m1j_C Fibrinogen gamma chain; 38.3 3.4E+02 0.012 27.8 14.3 30 272-301 104-133 (409)
145 2oto_A M protein; helical coil 38.2 2E+02 0.0069 25.0 19.0 22 181-202 34-55 (155)
146 4dzn_A Coiled-coil peptide CC- 38.1 67 0.0023 21.6 4.8 27 232-258 3-29 (33)
147 1x79_B RAB GTPase binding effe 37.8 1.9E+02 0.0066 24.7 11.7 34 255-288 59-92 (112)
148 3etv_A Protein transport prote 37.8 98 0.0034 31.4 8.3 87 181-269 14-102 (355)
149 1t2k_D Cyclic-AMP-dependent tr 37.6 86 0.0029 23.4 6.2 23 221-243 33-55 (61)
150 1g6u_A Domain swapped dimer; d 37.2 56 0.0019 23.6 4.7 23 226-248 22-44 (48)
151 1t6f_A Geminin; coiled-coil, c 36.8 60 0.002 22.8 4.6 25 233-257 9-33 (37)
152 1nlw_A MAD protein, MAX dimeri 36.4 44 0.0015 26.6 4.6 29 220-248 50-78 (80)
153 4h22_A Leucine-rich repeat fli 36.1 2E+02 0.0068 24.4 10.7 31 224-254 23-53 (103)
154 1fxk_A Prefoldin; archaeal pro 36.0 1.6E+02 0.0056 23.4 11.8 6 233-238 74-79 (107)
155 1nkp_B MAX protein, MYC proto- 35.7 40 0.0014 26.6 4.2 28 221-248 51-78 (83)
156 2wt7_A Proto-oncogene protein 35.5 1E+02 0.0036 23.2 6.4 22 221-242 34-55 (63)
157 2xnx_M M protein, M1-BC1; cell 35.4 2.5E+02 0.0084 25.2 10.2 17 292-308 99-115 (146)
158 2dq3_A Seryl-tRNA synthetase; 35.3 25 0.00085 35.9 3.7 91 214-313 27-117 (425)
159 3cve_A Homer protein homolog 1 35.3 1.7E+02 0.0058 23.3 11.0 28 229-256 5-32 (72)
160 1nkp_A C-MYC, MYC proto-oncoge 33.9 57 0.0019 26.4 4.9 32 219-250 54-85 (88)
161 3rrk_A V-type ATPase 116 kDa s 31.9 1.6E+02 0.0054 28.5 8.7 33 221-253 96-128 (357)
162 1s1c_X RHO-associated, coiled- 31.1 2E+02 0.0068 22.9 9.9 34 228-261 3-36 (71)
163 1m1j_B Fibrinogen beta chain; 30.7 4.8E+02 0.017 27.2 15.1 16 330-345 266-281 (464)
164 3jsv_C NF-kappa-B essential mo 30.6 2.4E+02 0.0081 23.6 11.6 18 285-302 66-83 (94)
165 3i00_A HIP-I, huntingtin-inter 29.5 2.7E+02 0.0092 23.9 11.8 15 222-236 20-34 (120)
166 2wt7_B Transcription factor MA 29.3 2.4E+02 0.0082 23.2 9.3 26 265-290 61-86 (90)
167 3lss_A Seryl-tRNA synthetase; 29.2 2.4E+02 0.0081 29.6 9.9 25 226-250 113-137 (484)
168 2e7s_A RAB guanine nucleotide 29.1 1.4E+02 0.0048 26.4 6.9 15 182-196 21-35 (135)
169 3a2a_A Voltage-gated hydrogen 28.7 2E+02 0.0067 22.0 6.7 34 219-252 13-46 (58)
170 1x79_B RAB GTPase binding effe 28.7 2.8E+02 0.0095 23.8 11.9 22 179-200 16-37 (112)
171 4b4t_K 26S protease regulatory 28.7 87 0.003 32.0 6.4 7 332-338 168-174 (428)
172 3gp4_A Transcriptional regulat 28.5 2.8E+02 0.0096 23.7 10.6 23 226-248 90-112 (142)
173 1wt6_A Myotonin-protein kinase 28.3 2.4E+02 0.0083 23.0 8.5 8 180-187 14-21 (81)
174 3tq7_B Microtubule-associated 28.2 68 0.0023 26.1 4.4 26 178-203 10-35 (82)
175 3thf_A Protein shroom; coiled- 28.1 3.7E+02 0.013 25.0 15.9 40 265-304 147-186 (190)
176 3ra3_B P2F; coiled coil domain 28.0 47 0.0016 21.7 2.7 10 242-251 11-20 (28)
177 2dq3_A Seryl-tRNA synthetase; 27.6 69 0.0024 32.7 5.4 68 175-250 30-101 (425)
178 3tkl_B LIDA protein, substrate 27.5 1.2E+02 0.004 29.2 6.5 43 178-220 44-88 (267)
179 3bbp_D GRIP and coiled-coil do 27.0 39 0.0013 26.9 2.7 36 226-261 31-66 (71)
180 2fic_A Bridging integrator 1; 26.9 3.6E+02 0.012 24.5 13.7 7 176-182 112-118 (251)
181 3rrk_A V-type ATPase 116 kDa s 26.7 1.2E+02 0.0042 29.3 6.8 29 218-246 100-128 (357)
182 2k48_A Nucleoprotein; viral pr 26.7 3E+02 0.01 23.5 8.9 16 281-296 83-98 (107)
183 2dgc_A Protein (GCN4); basic d 26.5 96 0.0033 23.7 4.8 27 226-252 32-58 (63)
184 2zdi_C Prefoldin subunit alpha 26.5 2.8E+02 0.0095 23.9 8.5 38 219-256 100-137 (151)
185 2aze_B Transcription factor E2 26.1 1.2E+02 0.004 25.5 5.7 21 299-319 56-76 (106)
186 2xv5_A Lamin-A/C; structural p 25.9 1.6E+02 0.0055 23.3 6.1 36 222-257 3-38 (74)
187 2p22_A Suppressor protein STP2 25.9 3.3E+02 0.011 24.9 9.1 41 261-301 51-91 (174)
188 3plt_A Sphingolipid long chain 25.4 4.5E+02 0.015 25.1 16.3 75 178-255 75-155 (234)
189 1lwu_C Fibrinogen gamma chain; 25.2 1.3E+02 0.0044 30.0 6.8 35 216-250 11-45 (323)
190 2b9c_A Striated-muscle alpha t 25.1 3.5E+02 0.012 23.8 15.7 22 182-203 23-44 (147)
191 1zxa_A CGMP-dependent protein 25.0 1.2E+02 0.0042 23.8 5.2 25 230-254 24-48 (67)
192 2xnx_M M protein, M1-BC1; cell 24.7 3.5E+02 0.012 24.2 8.7 17 221-237 37-53 (146)
193 2l5g_B Putative uncharacterize 24.6 1.5E+02 0.0052 21.4 5.2 22 230-251 15-36 (42)
194 2eqb_B RAB guanine nucleotide 24.5 3.1E+02 0.011 22.9 14.0 25 179-203 8-32 (97)
195 3haj_A Human pacsin2 F-BAR; pa 23.9 5.8E+02 0.02 25.9 15.6 22 320-342 287-308 (486)
196 2f1m_A Acriflavine resistance 23.5 2.7E+02 0.0093 25.4 8.3 28 274-301 99-126 (277)
197 3tnf_B LIDA, RAS-related prote 23.3 2.2E+02 0.0074 28.5 7.7 48 175-222 24-73 (384)
198 1lrz_A FEMA, factor essential 23.3 2.2E+02 0.0075 28.3 8.1 13 303-315 311-323 (426)
199 2p2u_A HOST-nuclease inhibitor 23.2 4E+02 0.014 23.7 13.6 28 291-327 71-99 (171)
200 3l4q_C Phosphatidylinositol 3- 22.9 4.3E+02 0.015 24.0 15.1 52 226-284 98-149 (170)
201 1gu4_A CAAT/enhancer binding p 22.8 1.6E+02 0.0055 23.5 5.7 29 216-244 42-70 (78)
202 3m9b_A Proteasome-associated A 22.5 91 0.0031 30.2 4.9 31 280-310 75-105 (251)
203 1gmj_A ATPase inhibitor; coile 22.3 3.2E+02 0.011 22.3 9.3 30 228-257 48-77 (84)
204 3ga8_A HTH-type transcriptiona 22.2 14 0.00047 28.9 -0.8 21 9-30 25-45 (78)
205 1jnm_A Proto-oncogene C-JUN; B 22.2 89 0.0031 23.4 3.9 19 222-240 34-52 (62)
206 3ghg_C Fibrinogen gamma chain; 22.0 6.6E+02 0.023 25.8 13.7 16 330-345 203-218 (411)
207 2gd5_A Charged multivesicular 22.0 4.2E+02 0.014 23.5 11.2 40 213-252 10-49 (179)
208 2v0o_A FCHO2, FCH domain only 21.9 4.5E+02 0.015 23.8 18.4 17 184-200 134-150 (276)
209 2ve7_C Kinetochore protein NUF 21.9 14 0.00049 35.4 -0.9 62 213-274 144-205 (250)
210 4ani_A Protein GRPE; chaperone 21.8 2.9E+02 0.0098 26.0 8.0 8 382-389 189-196 (213)
211 1fzc_C Fibrin; blood coagulati 21.8 49 0.0017 32.9 3.0 14 332-345 118-131 (319)
212 2dgc_A Protein (GCN4); basic d 21.7 1.5E+02 0.0051 22.6 5.0 28 230-257 29-56 (63)
213 3viq_B Mating-type switching p 21.7 87 0.003 25.7 3.9 25 214-238 5-29 (85)
214 1m1j_A Fibrinogen alpha subuni 21.2 7.4E+02 0.025 26.1 13.4 79 222-300 56-145 (491)
215 1j1d_C Troponin I, TNI; THIN f 20.9 4.2E+02 0.015 23.2 11.3 20 178-197 28-47 (133)
216 1zhc_A Hypothetical protein HP 20.8 1.7E+02 0.0059 22.9 5.4 40 221-261 21-60 (76)
217 2ocy_A RAB guanine nucleotide 20.6 4.6E+02 0.016 23.5 16.9 24 269-292 118-141 (154)
218 4dci_A Uncharacterized protein 20.5 4.6E+02 0.016 23.4 11.1 23 229-251 34-56 (150)
219 3m91_A Proteasome-associated A 20.4 2.7E+02 0.0092 20.7 7.2 30 228-257 13-42 (51)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=4.8e-58 Score=433.70 Aligned_cols=139 Identities=38% Similarity=0.735 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 013502 277 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 356 (442)
Q Consensus 277 ~~~eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl 356 (442)
++++|++|+++||++++.|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeeecCCcceeecCCC--ceeeccccc-ccchhhhhccHHHHHhhhhhHHhhhhh
Q 013502 357 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELTLQN-LQILRIKRITFHQINALNCPIRLKMTR 416 (442)
Q Consensus 357 ~~~F~Yr~kLvPmGS~SkI~~~~~--~~y~Ly~s~-~~~~~~~rfd~~m~~fldc~~q~~~~~ 416 (442)
+++|+ +|+|+||||||+|++..+ .+|||||+| +++++.+|||.||++||+|++||.+.-
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~ 143 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV 143 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence 99998 555999999999998653 589999976 689999999999999999999998754
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-50 Score=381.71 Aligned_cols=113 Identities=30% Similarity=0.456 Sum_probs=99.5
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChhhHHHHHHHHHHHHHHHHhhcCCCcccceeeeecCCcceeec----
Q 013502 302 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 377 (442)
Q Consensus 302 tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~kl~~~F~Yr~kLvPmGS~SkI~~---- 377 (442)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||||+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999998 344999999999998
Q ss_pred ---CC---------Cceeecccccc-----cchhhhhccHHHHHhhhhhHHhhhh
Q 013502 378 ---SN---------NNTYELTLQNL-----QILRIKRITFHQINALNCPIRLKMT 415 (442)
Q Consensus 378 ---~~---------~~~y~Ly~s~~-----~~~~~~rfd~~m~~fldc~~q~~~~ 415 (442)
.+ ..+|||||++. .|.+.+|||.||++|||||+||++.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~ 134 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ 134 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence 32 24799999874 2445679999999999999999974
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.75 E-value=2e-17 Score=139.52 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
+.+.+++..|+.+|.+|.++|++||++++.++.+|..++.+..+++++|.+||++||.|++++++|+++++||++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 013502 293 QAHLELLKRT 302 (442)
Q Consensus 293 q~qLdkLrkt 302 (442)
+.||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.28 E-value=1.6e-07 Score=64.39 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.4
Q ss_pred CCcccchHHHHHHHHHhhcCCCCcCCc
Q 013502 142 NSGFHSTITVLKRAFEIATSQTQVEQP 168 (442)
Q Consensus 142 ~~~lss~i~~l~~lFdILSs~s~IDhP 168 (442)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 357999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.68 E-value=0.19 Score=44.86 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQR 201 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~ 201 (442)
+++.+..+..+.+.+..-+..
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~ 24 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADE 24 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 333333344444444333333
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.19 E-value=0.63 Score=41.38 Aligned_cols=11 Identities=0% Similarity=-0.003 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 013502 184 EVDDVTRDIEA 194 (442)
Q Consensus 184 qle~~~~E~d~ 194 (442)
++..+..+...
T Consensus 28 ~l~~l~~~~~~ 38 (284)
T 1c1g_A 28 DKKAAEDRSKQ 38 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.14 E-value=0.7 Score=43.22 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 177 LSDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 177 Lle~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
+...+..++++++.|-+.|+..=+.|+
T Consensus 18 ~~~~~~q~~~~le~El~EFqesSrELE 44 (189)
T 2v71_A 18 LSMKYKQSFQEARDELVEFQEGSRELE 44 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777766655554
No 8
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.96 E-value=0.35 Score=40.37 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 191 DIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNN 270 (442)
Q Consensus 191 E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~ 270 (442)
++.+-..-|+.|+.+ ++.+..++..|+.+...+..+|..++.+...++.+-.....+...+.-. ...
T Consensus 5 ~~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q-------l~e 71 (96)
T 3q8t_A 5 DSEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ-------QLE 71 (96)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHH
Confidence 344555566666543 5677889999999999999999999999999988888777776655533 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 013502 271 FQFQLIAHQEERDAISSKIEV 291 (442)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~ 291 (442)
|+-++..+..+.+-..++++.
T Consensus 72 ~~dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 72 LDDELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555444444443
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.59 E-value=0.1 Score=59.51 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
++.++..|+++.+++++++..+.+|.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~ 1007 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEK 1007 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.54 E-value=1.3 Score=40.06 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
.++.+.+.|...|++.|.--+........|+.+..++++.=...=..|-..+..|-....++.++.+.+-+..+.+.+|+
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 34555555555555555555555555555555554444333333344555666666667777778888888888888887
Q ss_pred h
Q 013502 301 R 301 (442)
Q Consensus 301 k 301 (442)
+
T Consensus 154 ~ 154 (155)
T 2efr_A 154 K 154 (155)
T ss_dssp T
T ss_pred c
Confidence 6
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.29 E-value=1.6 Score=41.54 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=8.2
Q ss_pred eeecCCcceee
Q 013502 366 IIPMGSYPRIM 376 (442)
Q Consensus 366 LvPmGS~SkI~ 376 (442)
++.|=+|.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 67777777776
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.12 E-value=2 Score=40.91 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIE-VSQAHLELLKR 301 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~-~~q~qLdkLrk 301 (442)
.....++.++..+..++..+...+. -....-+++++
T Consensus 150 ~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 150 NEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3333344444444444444433332 23345666765
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.68 E-value=2.4 Score=39.55 Aligned_cols=99 Identities=10% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHhchhccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 013502 188 VTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELEE 262 (442)
Q Consensus 188 ~~~E~d~Y~~fL~~Le~e~~~~-~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L----~eeEe 262 (442)
.+.|+..|......+...-... ..-++|...-..| |.+|+++|+.+|+....+......+..+.... +..-.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrEL---E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~ 84 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSREL---EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777766554443221100 0012333322222 33345555566665555555555555444332 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 263 RYWQEFNNFQFQLIAHQEERDAISSKI 289 (442)
Q Consensus 263 ~~W~e~N~~q~qL~~~~eE~~sl~~q~ 289 (442)
+.-...|.++.++..+....+.+..++
T Consensus 85 e~~~~~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 85 QSYKQVSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777777666665544
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.67 E-value=0.43 Score=42.34 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 215 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 282 (442)
Q Consensus 215 l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~ 282 (442)
+..|+.++..+-..|.++++++++|...+..++..++.+.+.+.++-+++-++++.++.+...++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888888888888887777777777777777777766665444
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.54 E-value=0.25 Score=51.10 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
+-++.+..+.++..+++|+..++.+++..+.++..|+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3333444444444444455555555544444444443
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.47 E-value=0.85 Score=57.57 Aligned_cols=65 Identities=15% Similarity=0.220 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 294 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~ 294 (442)
+++|.++|++.++..+++.+++.+..++++.=+++-.+|.....+...++++.+..+.+++.|..
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655555544455555555555555555555555555554443
No 17
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.39 E-value=4.7 Score=37.04 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 013502 242 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS----SKIEVSQAHLE 297 (442)
Q Consensus 242 ~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~----~q~~~~q~qLd 297 (442)
++...+..|+.+.+++..-+.+.--+...++-.+..++.+..+++ -++..++..++
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344455566666677777777777777777777777777777766 44445554443
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.67 E-value=3.1 Score=52.67 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 171 LECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 171 ~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
.|-...-..-|.++.+++...++.|..=|++|..
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777777778888888887764
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.20 E-value=8.4 Score=34.86 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+....++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666655555555555555
No 20
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.67 E-value=4.7 Score=40.81 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 243 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAH 278 (442)
Q Consensus 243 l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~ 278 (442)
..++.+....+.+++.++.++.-++..++..++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 333333333333344333333334444444443333
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.11 E-value=5.4 Score=34.37 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 278 HQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 278 ~~eE~~sl~~q~~~~q~qLdkL 299 (442)
...+.+.+..++.+.+.++.+|
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 4555666666666666666554
No 22
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.09 E-value=7.4 Score=31.02 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.++..+++.+..++++++.++.++..++..|+.-.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777777777776544
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.63 E-value=8.8 Score=31.60 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 264 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 264 ~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLd 297 (442)
+......++.++..+.++...++..+.....++.
T Consensus 69 ~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 69 YHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444433
No 24
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.98 E-value=11 Score=31.47 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
++.+++.+..+..|.+.+..-...++... ........+++.|...|...+..+|.+++.+...+...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~------k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665554444433211 11122333455555556666666666555555544433
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=87.77 E-value=11 Score=31.20 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 260 LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 260 eEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
...-|..+.++++.++.....++..+..+++..+..++.+++
T Consensus 50 ~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 50 LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445588888899999999999998899999888888888874
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=87.21 E-value=11 Score=30.72 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 217 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 217 ~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
+++..++.+...+...++..++.+.++......+..+ .|+++.++.+.++.+..+.++-.....+|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e--------------k~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ--------------KNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555554444444444433 34444445555555555544443333333
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.75 E-value=19 Score=36.34 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
++++-...+.+.+.++..+.+++
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~ 380 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGR 380 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555554443
No 28
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.32 E-value=12 Score=30.42 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
++.+++....+......++|.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555555544
No 29
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.69 E-value=10 Score=33.42 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q 274 (442)
.+-.|.-++..+.+.++.+.+++..|+.++..+...+....+..-++...++.+
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666666666666666666665555544443333333333333
No 30
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.55 E-value=12 Score=39.64 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 189 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 268 (442)
Q Consensus 189 ~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~ 268 (442)
+.+..+|+.-|.++++...+ -.++..+.+.+...+-.+..+|.+.+++..++..+.- +++.++.++.-..|-+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY---EAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45666788888888764322 1233334444445555555555555555554433332 222333333334555666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 269 NNFQFQLIAHQEERDAIS 286 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~ 286 (442)
.+++.+|...++++..+.
T Consensus 83 AeY~~kl~aYe~~~~~~~ 100 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIK 100 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666665433
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.96 E-value=16 Score=30.44 Aligned_cols=71 Identities=14% Similarity=0.258 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
.+...+.+++....++..++..|..+...++.+=+.+-..+...+..|.+........++.....+..+..
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666665555544555555555555554444444444444444444433
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.85 E-value=17 Score=32.98 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 013502 235 ETEKQNAEVNAELKEL 250 (442)
Q Consensus 235 eLEkE~~~l~~El~~l 250 (442)
.|++++..+..++.++
T Consensus 72 ~L~~El~~l~~ki~dL 87 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRL 87 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.78 E-value=16 Score=30.27 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
++.+...|...+..+|.+.+.+...+.
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445444444444444433
No 34
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=84.23 E-value=16 Score=30.11 Aligned_cols=66 Identities=15% Similarity=0.199 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 231 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 296 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qL 296 (442)
..+..++....++..++..+..+...++.+=+.+-..+...+..|......+...++.....+..+
T Consensus 30 ~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 30 ADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333444444444444433333333333333333333
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.16 E-value=12 Score=29.85 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
+++.+..+..|.+.+..-+..++... .+..+...+++.|...|...+..+|.+.+.+...+....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l------~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADK------KAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444333211 111223334455555555555555555555555544444
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.07 E-value=13 Score=39.75 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcCCCc--cc--ceeeeecCCc
Q 013502 344 QACLLLHTMCQYFRPKF--PY--RIKIIPMGSY 372 (442)
Q Consensus 344 Q~~LLL~tla~kl~~~F--~Y--r~kLvPmGS~ 372 (442)
|==.|...+|.-|-... +| ..|+.|+-..
T Consensus 181 ~QKQLeQv~a~dL~p~~~~q~Lp~lKmrP~kD~ 213 (562)
T 3ghg_A 181 QQKQLEQVIAKDLLPSRDRQHLPLIKMKPVPDL 213 (562)
T ss_dssp HHHHHHHHHTTCCCCSCCCC-------------
T ss_pred HHHHHHHHhhcccCCccccccchhccccccccc
Confidence 45677888888775543 23 3566676543
No 37
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.52 E-value=22 Score=30.32 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=6.8
Q ss_pred HHHHHHHHHhch
Q 013502 194 AYEACLQRLEGE 205 (442)
Q Consensus 194 ~Y~~fL~~Le~e 205 (442)
.|...+..|+.+
T Consensus 17 ~ye~~I~~LR~q 28 (119)
T 3ol1_A 17 LYEEEMRELRRQ 28 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466666655543
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.50 E-value=14 Score=37.17 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 231 AAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
+.++++|.|...++.+|+.++++.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544443
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.44 E-value=18 Score=30.75 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 209 VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 209 ~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.+|..+|..|-..||.....++.+-..+..........+.+|+.|..+|.
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 34566776666666666555555554444444444444555555544443
No 40
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=81.10 E-value=11 Score=31.08 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
..|+...+.+..+++.++++...+..++.+++.+.
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666665443
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.46 E-value=26 Score=29.97 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
|+.++......|..+|+.+...++.|+..|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444455555555555544444444433
No 42
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.22 E-value=31 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
.+..|+.|...|..+|.+++.+..+..+.+..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l 101 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERL 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444433333333
No 43
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.03 E-value=50 Score=35.30 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 013502 288 KIEVSQAHLELLKRTNVLN 306 (442)
Q Consensus 288 q~~~~q~qLdkLrktNV~N 306 (442)
-|+..|.||+.+-.+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 3666777888888888877
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=79.66 E-value=6 Score=31.76 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
++...+.+-.+|.+..+..|+++|++..+.+++|..|+.+...
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555666667778888888888777777765543
No 45
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.64 E-value=38 Score=30.61 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 270 NFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
.++.....++....-....++..+.||..|+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555666777777777765
No 46
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.48 E-value=24 Score=30.36 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
......|..+|+.+...++.|+..|.
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333444444444444444444333
No 47
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=76.34 E-value=30 Score=28.29 Aligned_cols=30 Identities=7% Similarity=0.168 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 270 NFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 270 ~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
.++.++..+..+...+..++......++.|
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 48
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=76.09 E-value=37 Score=29.19 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 013502 281 ERDAISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 281 E~~sl~~q~~~~q~qLdkLrktN 303 (442)
.|.-+....+..+.+|..|++-|
T Consensus 84 dREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 84 AREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHH
Confidence 34446666777778888887654
No 49
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.27 E-value=10 Score=29.14 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
..+...|..++++|+++..+|..++..|+.|...|.+
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888888777776655543
No 50
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.81 E-value=26 Score=28.42 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+|..-+..++.|.++++..+..++.+.+.|
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555444433
No 51
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=74.40 E-value=38 Score=28.54 Aligned_cols=55 Identities=7% Similarity=0.009 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~ 273 (442)
+..|+.........+..++.+.+....++.+...+.+.++.+.++...++.....
T Consensus 76 i~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~~ 130 (150)
T 3ajw_A 76 IQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777788888888888888888888888888888777776654443
No 52
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.59 E-value=29 Score=28.14 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
+.+|.+-..|+..+..+|.+.+.-..+...++.|.+.+-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555544444444444444443
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=73.54 E-value=16 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
..|+...+.+..+++.++++...+..++.+++..
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666777777776666666666544
No 54
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=73.47 E-value=33 Score=33.15 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q 293 (442)
.|..+-..+..+|+-|+-++.-...||.++..+.++|+..-+........++.+-..+++++.-++.+++..+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3555566677777777777777888888888888888777777777777777776777777766666665544
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=73.29 E-value=34 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
.++.+|.+-..|+..+..+|...+.-..+...++.|.+.+-+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555655555555555444444444444433
No 56
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.14 E-value=4.5 Score=33.38 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRF-----KELEERYWQEFNNFQ 272 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L-----~eeEe~~W~e~N~~q 272 (442)
.|.+++..|+.+..++++++..++.+..+. -+.=-+..++||+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHH
Confidence 344444444445555555555544433221 111114567777765
No 57
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=72.73 E-value=24 Score=30.21 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 013502 187 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 257 (442)
Q Consensus 187 ~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El---------~~le~e~~~L 257 (442)
.+.++++.|..++.-|+++..- +..-+ ...+..+-+++..|..+|..++.++.++...+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~~-L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQA-LERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 3456777888888877765321 00001 12566677888889999999999988775543 111100 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 013502 258 KELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKRTN 303 (442)
Q Consensus 258 ~eeEe~~W~e~N~~q~qL~~~~eE~~s-l~~q~~~~q~qLdkLrktN 303 (442)
..+=...|......-.++.+.-+.... +...+++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 122235788777666665544444433 4556778888888887643
No 58
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.61 E-value=50 Score=33.95 Aligned_cols=15 Identities=13% Similarity=0.508 Sum_probs=12.1
Q ss_pred CCCChhhHHHHHHHH
Q 013502 331 IPVEWDEINAAWGQA 345 (442)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (442)
-.-.|.|-=.++|..
T Consensus 204 F~R~W~~Yk~GFG~~ 218 (409)
T 1m1j_C 204 FRRNWVQYKEGFGHL 218 (409)
T ss_dssp CCCCHHHHHHCEEEE
T ss_pred ccCCHHHHHhhhCCc
Confidence 345899999999986
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.25 E-value=49 Score=28.82 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 232 AIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
.+++|+.|...|+++|.++.++.+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.36 E-value=97 Score=31.84 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCC-CCCChh
Q 013502 289 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPK-IPVEWD 336 (442)
Q Consensus 289 ~~~~q~qLdkLrktNV~Nd~F~I~hdG~fGTINGlRLGrlp~-~~V~W~ 336 (442)
|+..|.||+.+..+|.+... .+ -++..|..+-+++ +|-+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 45556678888888887642 11 2356666666655 333565
No 61
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=71.13 E-value=50 Score=28.45 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHhchhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 013502 187 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 256 (442)
Q Consensus 187 ~~~~E~d~Y~~fL~~Le~e~~~~~s~-e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El---------~~le~e~~~ 256 (442)
.++.|.+.|..++.-|+++..- +.. -++ ..+..+-++...|...|..++.++..+...+ .++-..
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~~-L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~--- 86 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETEA-LMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA--- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh---
Confidence 3455677788888877765321 111 222 3566677778888889998888888775542 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 013502 257 FKELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKR 301 (442)
Q Consensus 257 L~eeEe~~W~e~N~~q~qL~~~~eE~~s-l~~q~~~~q~qLdkLrk 301 (442)
...=...|.....+-.+..+.-+.... +..++.+.+.-|+-|+.
T Consensus 87 -~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 -HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111135788876666555544444333 46677788888888873
No 62
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=70.70 E-value=55 Score=28.72 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 243 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l 243 (442)
+.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-..|...+.++..+.+.+
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777777666555444321 13344444455555555555555555555443
No 63
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=69.90 E-value=59 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 013502 234 EETEKQNAEVNAELKELE 251 (442)
Q Consensus 234 eeLEkE~~~l~~El~~le 251 (442)
+..|.+.+++.+||.+.+
T Consensus 317 ~~Aer~~e~a~ael~~a~ 334 (551)
T 2b5u_A 317 EAAERNYERARAELNQAN 334 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555544443
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.73 E-value=94 Score=31.06 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
-+....+++.|..-++.+++.+..++++||+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 441 GQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3346677788888888899999999998874
No 65
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=69.55 E-value=17 Score=34.61 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 276 IAHQEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 276 ~~~~eE~~sl~~q~~~~q~qLdkLr 300 (442)
...+.++.++++++..++.+|+.++
T Consensus 124 ~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 124 AVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666665543
No 66
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=68.82 E-value=54 Score=27.88 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
..-+..|..+++.+..|+.....-+..+..
T Consensus 19 e~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888777766666553
No 67
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=68.54 E-value=46 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 013502 266 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 266 ~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrkt 302 (442)
.+++.++..+-+..--+-.++++++..+.+|.-|++.
T Consensus 49 ~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 49 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455566655555555666788888888888888863
No 68
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=68.52 E-value=52 Score=30.21 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~----------~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
-...|.....++...++.+|++...+..++..++.+...+++.+.. .--.-..+..|+.++..+-.+++.
T Consensus 50 ~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieD 129 (174)
T 2p22_A 50 FHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTD 129 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHH
Confidence 3344566666777777777777777777777777644444332211 000112345677777777777666
Q ss_pred HHHHHHHH
Q 013502 288 KIEVSQAH 295 (442)
Q Consensus 288 q~~~~q~q 295 (442)
-+-+...-
T Consensus 130 aIy~L~~a 137 (174)
T 2p22_A 130 TIECLSRM 137 (174)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 69
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=68.41 E-value=27 Score=33.55 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666665553
No 70
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.12 E-value=2.4 Score=45.21 Aligned_cols=16 Identities=13% Similarity=0.449 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 013502 188 VTRDIEAYEACLQRLE 203 (442)
Q Consensus 188 ~~~E~d~Y~~fL~~Le 203 (442)
+++++..|..-|..++
T Consensus 333 ~~~~~~~~~~~~~~~~ 348 (575)
T 2i1j_A 333 AEKKQQEYQDRLRQMQ 348 (575)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 4444445554444444
No 71
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.70 E-value=75 Score=29.12 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.|++|++++..-+.+=..--.++++.. .++.+.+..+|..-++|...+..|+.++..|++++..|+.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~------tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSH------TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666555555444444444421 2233333334444444444444444444444444444443
No 72
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=67.35 E-value=48 Score=31.13 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 013502 151 VLKRAFEI 158 (442)
Q Consensus 151 ~l~~lFdI 158 (442)
++..+||.
T Consensus 122 ~i~elfd~ 129 (213)
T 1ik9_A 122 VIRELIAY 129 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33455554
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.74 E-value=48 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
|+.+-.++.+.|+++|.+...++..+..++...+.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445556666777777777777776666654433
No 74
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=66.60 E-value=16 Score=35.93 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e 253 (442)
.++++.|+.+.+++.+|+++++.+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 75
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.15 E-value=25 Score=28.75 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
|+.++...-.....+|.+.|+...+|..+++.++.+.+.
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444455555555555555555555544433
No 76
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.11 E-value=66 Score=27.57 Aligned_cols=85 Identities=13% Similarity=0.207 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
..|+.....+.-|++.|..-++....+... ....+.+++..|..+...+...|-+||.....++..-+. -..-|.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~---t~~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA---TIVSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH---HHhhHH
Confidence 457888889999999999887776654322 134567788888888888888888888887777655333 234556
Q ss_pred HHHHHHHHHH
Q 013502 259 ELEERYWQEF 268 (442)
Q Consensus 259 eeEe~~W~e~ 268 (442)
+.|.+|=+.+
T Consensus 81 D~E~k~n~ai 90 (111)
T 2v66_B 81 DFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 77
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=65.01 E-value=66 Score=27.56 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~ 252 (442)
..+|..|-.....+...|.+++.
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 78
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.94 E-value=55 Score=26.54 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
|+....++|--|...|..|+..+..-+.+++..+.+++.|
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555444444444444444443
No 79
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.91 E-value=19 Score=36.69 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=9.1
Q ss_pred eeecCCcceeecCCCceeecccc
Q 013502 366 IIPMGSYPRIMDSNNNTYELTLQ 388 (442)
Q Consensus 366 LvPmGS~SkI~~~~~~~y~Ly~s 388 (442)
++.||-.. ++++|-++|+
T Consensus 144 ifAYGqTG-----SGKTyTM~g~ 161 (403)
T 4etp_A 144 IFAYGQTG-----SGKTFTMLNP 161 (403)
T ss_dssp EEEESCTT-----SSHHHHHHCT
T ss_pred EEEECCCC-----CCCceEeCCC
Confidence 55566321 2456666654
No 80
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=64.02 E-value=77 Score=31.54 Aligned_cols=75 Identities=17% Similarity=0.257 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhchhcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 178 le~Ld~qle~~~~---E~d~Y~~fL~~Le~e~~~~~-s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
.++|+.++..+++ .+-+|...|.+|..+....+ +..++...+....+.|.++..+-.++...++.|+.+|+.|-.
T Consensus 26 ~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 26 QEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5566666666554 34456788888887653333 345665655443333366666666777777777777666543
No 81
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.96 E-value=39 Score=29.98 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHh
Q 013502 287 SKIEVSQAHLELLK 300 (442)
Q Consensus 287 ~q~~~~q~qLdkLr 300 (442)
..++..+.||..|+
T Consensus 117 ~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 117 MLLDTLTLQLKNLK 130 (135)
T ss_dssp HCC-----------
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555554
No 82
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=62.95 E-value=77 Score=32.03 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 285 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl 285 (442)
|+..+..--+.|...|+++....++|+++|+...+....++ ++.|.++-++..+...+|..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~~ 259 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQY 259 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHHH
Confidence 34445555566777777887777777777666555444333 67788888887777777653
No 83
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=62.69 E-value=23 Score=29.11 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
...+..+..+.++|++|.+.|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677788888888888888888777665554
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.19 E-value=23 Score=26.64 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
....|+.+.+.|+.+...|..++..|+.+...|.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555443
No 85
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=61.35 E-value=1.6e+02 Score=30.78 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
.+-|-++-+.+.++.+.-+..|..|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 444545555566666666667776654
No 86
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=61.24 E-value=47 Score=28.94 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 013502 284 AISSKIEVSQAHLE 297 (442)
Q Consensus 284 sl~~q~~~~q~qLd 297 (442)
.|-.+|.-....||
T Consensus 75 ~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 75 ELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.58 E-value=25 Score=35.76 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=4.2
Q ss_pred CCceeeccc
Q 013502 379 NNNTYELTL 387 (442)
Q Consensus 379 ~~~~y~Ly~ 387 (442)
+...|+|..
T Consensus 198 nE~i~DLL~ 206 (403)
T 4etp_A 198 NENIVDLLR 206 (403)
T ss_dssp TTEEEETTC
T ss_pred cceeeEccC
Confidence 344555553
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.18 E-value=23 Score=36.27 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
.|+.|..+|.+++++++++.+++.++++.++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444
No 89
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=59.88 E-value=31 Score=36.27 Aligned_cols=88 Identities=18% Similarity=0.161 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 295 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~q 295 (442)
..++..|.++-+++..++++|..++.++.++|..+....++.+ ....+...+. ++...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~----~l~~~~~~l~-------~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAK----DLIAEKEKLS-------NEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH----HHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH----HHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4566677888888999999999999988888877655332111 1222333344 4444444444444444
Q ss_pred HHHH--hhcccCCCceeeeec
Q 013502 296 LELL--KRTNVLNDAFPIWHD 314 (442)
Q Consensus 296 LdkL--rktNV~Nd~F~I~hd 314 (442)
|+.+ .==|+..+.=.|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 4322 224777766666543
No 90
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=59.25 E-value=79 Score=26.49 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013502 279 QEERDAISSKIEVSQAHLELLK 300 (442)
Q Consensus 279 ~eE~~sl~~q~~~~q~qLdkLr 300 (442)
..+...+..++.+.+.++.+|.
T Consensus 67 ~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 67 VEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHTTSHHHHHHHHHHHTTC---
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666655554
No 91
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.24 E-value=57 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
..++..|.++-+++..++++|+.++.++.++|.++...
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34566778888889999999999999999998876543
No 92
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=59.06 E-value=83 Score=27.28 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=30.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 167 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 167 hPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
.|-|.+..... ..|-..+-...+.++....-|= .. ..++++-.+.+.+|++|-+...+++++.-++.+.
T Consensus 49 ~~~~~~f~~~~-~ela~dli~k~kqIe~LIdsLP---~~---~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ 117 (132)
T 1ykh_B 49 VVPPEEFSNTI-DELSTDIILKTRQINKLIDSLP---GV---DVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (132)
T ss_dssp CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHST---TT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC---CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34454433322 2244444444455554443332 21 1245555555555555555555555444444433
No 93
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=58.58 E-value=48 Score=34.27 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q 293 (442)
++..++..|.++-+++..++++|..++.++.++|..+....++. +....+...+..++.+++++...++.++...
T Consensus 28 ~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (455)
T 2dq0_A 28 KWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYY- 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34566777888888999999999999999999988765432111 1223333444444444444444443333222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 013502 294 AHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~h 313 (442)
.|+==|+..+.=.++.
T Consensus 103 ----~~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 103 ----LWRLPNITHPSVPVGK 118 (455)
T ss_dssp ----HTTSCCCCCTTSCCCS
T ss_pred ----HHhCCCCCCccCCCCC
Confidence 1233466655555543
No 94
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=58.53 E-value=14 Score=39.30 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 013502 149 ITVLKRAFEIA 159 (442)
Q Consensus 149 i~~l~~lFdIL 159 (442)
.+..+.|+++.
T Consensus 274 ~~~ak~i~~lc 284 (575)
T 2i1j_A 274 VRVNKRILALC 284 (575)
T ss_dssp HHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 44455555543
No 95
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=57.06 E-value=74 Score=28.37 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 211 SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 211 s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
++++-.+.+.+|++|-++..+++++.-++.+.
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ 117 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444444333
No 96
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=56.94 E-value=78 Score=25.73 Aligned_cols=22 Identities=5% Similarity=0.062 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
.+..+...+..++..++.+..+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e 38 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTE 38 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 97
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=56.33 E-value=52 Score=34.55 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
..++..|.++-+++..++++|..++-.+.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667778888888888888888888888877655
No 98
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.40 E-value=34 Score=25.95 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
...|..+.+.|+.+...|..++..|+.+...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666655554444
No 99
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.97 E-value=56 Score=26.19 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 013502 182 DKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
+++++.+..++.....-+..|+.
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~ 43 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQT 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 100
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.12 E-value=1.1e+02 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
+|..||..|..++....++++.|..
T Consensus 75 eLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 75 ELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 101
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.83 E-value=30 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
|.+.+..+-+|.+..+++|.+++.+.+.|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444333
No 102
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=52.87 E-value=67 Score=30.46 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 268 FNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 268 ~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~ 153 (341)
T 3fpp_A 123 MAVKQAQIGTIDAQIKRNQASLDTAKTNLDY 153 (341)
T ss_dssp HHHTHHHHHHHHHHHHHTHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3334445555555566666666655555443
No 103
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.64 E-value=54 Score=26.20 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhh
Q 013502 290 EVSQAHLELLKR 301 (442)
Q Consensus 290 ~~~q~qLdkLrk 301 (442)
...+.+||+++.
T Consensus 57 ~~LqseLDKfrS 68 (72)
T 3nmd_A 57 QMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHhhc
Confidence 344444555543
No 104
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=52.55 E-value=95 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
.|-+|.+.|.-.++++|.|+-+.+..|+.-++|..
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~ 57 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVA 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 45566777777888888888777777766654443
No 105
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=51.69 E-value=77 Score=33.30 Aligned_cols=24 Identities=4% Similarity=-0.078 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCC
Q 013502 336 DEINAAWGQACLLLHTMCQYFRPK 359 (442)
Q Consensus 336 ~EINAAwGQ~~LLL~tla~kl~~~ 359 (442)
++..+.+=.++-+...+-+.||+.
T Consensus 310 e~s~~e~e~ml~~~e~il~~LgLp 333 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQSLGLP 333 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc
Confidence 344444444555555566667664
No 106
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.62 E-value=32 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
...+..+..+.++|++|...|..++..|+.|...|.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888888888888877766554
No 107
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=51.32 E-value=72 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 267 EFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 298 (442)
Q Consensus 267 e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdk 298 (442)
.+...+.++...+.++..++++++.++.+|++
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44445556666667777777777777776543
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=49.94 E-value=85 Score=32.40 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
.++-+.+..+|+++|++..++++++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555443
No 109
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.90 E-value=28 Score=29.39 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 225 EERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 225 EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
+-..|.++|+.|+.|...|.+++..|+.+.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777776654
No 110
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.59 E-value=71 Score=26.94 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=23.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 013502 165 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 204 (442)
Q Consensus 165 IDhPLC~ECtd~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~ 204 (442)
-+.|++.+ =++.+.++++.++.|++......+.|+.
T Consensus 5 ~~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 5 QSFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp ----CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444 4566788888888888888888877764
No 111
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.15 E-value=39 Score=25.75 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNA 245 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~ 245 (442)
..+...|+.+-..|..++..|+.|...|..
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555444433
No 112
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=48.68 E-value=26 Score=29.54 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 259 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~e 259 (442)
...|.+||+.|+.+...|++.|..++...+.+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666666655555543
No 113
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.43 E-value=70 Score=29.87 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHhhcccCCC----ceeeeecCCeee------eccccCC
Q 013502 295 HLELLKRTNVLND----AFPIWHDGEFGT------INNFRLG 326 (442)
Q Consensus 295 qLdkLrktNV~Nd----~F~I~hdG~fGT------INGlRLG 326 (442)
+|-=|+=.|+.++ .|.+...|.=|+ +--|+||
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG~~~~~~~tl~ykL~ 121 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSGGSSDDYSIMDYKLG 121 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-----CCCCCCEEEE
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCCCcCCcceEEEEEEe
Confidence 3555666777775 455555555551 3447776
No 114
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.37 E-value=1.3e+02 Score=25.62 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 223 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 287 (442)
Q Consensus 223 E~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~ 287 (442)
+.|..++...+..|+.+.+.+......|+. .+.+.|.+|=.+...++..+..++.++..+..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~---~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQN---AIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444445555555555555554444444443 23344444444444444444444444444433
No 115
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.31 E-value=1.2e+02 Score=25.41 Aligned_cols=81 Identities=11% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchh----cc--------------cCC--------------HHHHHHHHHHHH
Q 013502 176 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----RD--------------VLS--------------EADFLKEKLKIE 223 (442)
Q Consensus 176 ~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~----~~--------------~~s--------------~e~l~~El~~LE 223 (442)
..++.+..++..+......|..+++.|+.-. .+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 3455666667777777777877777665311 00 000 011233333455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
...+.+...++.++++.+.+.+++..++.+..+
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777777777777666666655443
No 116
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=47.59 E-value=23 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
...|+.+++.|+.+...|..++..|+.+...|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667666666666666655444
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=46.88 E-value=1.3e+02 Score=25.49 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~ 249 (442)
-|.-.|+++|...+++..+.++
T Consensus 34 lLKD~LEe~eE~~aql~Re~~e 55 (103)
T 4h22_A 34 TLKDMLLELEEQLAESRRQYEE 55 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 118
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=46.79 E-value=1.5e+02 Score=25.97 Aligned_cols=106 Identities=18% Similarity=0.308 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 180 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEAD----FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 255 (442)
Q Consensus 180 ~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~----l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~ 255 (442)
.|.+.+..++++...+..-++.+..........+. +..+ |+..+.+| ..|++|.+...+++.++..++.+..
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qse---le~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSK---LDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHH---HHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46778888888888887776655432211000010 1111 22222221 1235566666667777777776665
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 256 RFKEL---EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 299 (442)
Q Consensus 256 ~L~ee---Ee~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkL 299 (442)
+++.. +. |. +..++..+..-.+.++-++..|+.+
T Consensus 86 ~~e~~~~~~~-~~---------~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 86 AAEENNNVED-YF---------KEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp CCCC----CH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 11 11 2233444444445555666666654
No 119
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.51 E-value=31 Score=25.74 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAEL 247 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El 247 (442)
.|..|-.+|.+++++|.++.+++.+++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 120
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=46.13 E-value=1.3e+02 Score=25.44 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
.+.+..+++|-++|...-...-....+|+.+++.|..|...|-
T Consensus 43 E~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 43 EKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555444444455555555555555555553
No 121
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=45.68 E-value=1.2e+02 Score=26.35 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 013502 217 KEKLKIE 223 (442)
Q Consensus 217 ~El~~LE 223 (442)
.++..|+
T Consensus 16 ae~q~L~ 22 (119)
T 3etw_A 16 AEYQNLA 22 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 122
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.32 E-value=1.2e+02 Score=30.79 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
+.+++ ++.+...+..+.+..++--+.+.++... -..+ +...|.++-+.+..+|+++|.+..++++++..
T Consensus 28 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 28 EALLA-LDREVQELKKRLQEVQTERNQVAKRVPK-APPE----EKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSSS-SCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 6666666666666666655555544321 1111 12233444445555555555555555555543
No 123
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.63 E-value=45 Score=22.49 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAEL 247 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El 247 (442)
|.+|+..|.+|.+.+.=|+
T Consensus 7 lkqeiaalkkeiaalkfei 25 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEI 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333
No 124
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=44.40 E-value=1.3e+02 Score=27.64 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 276 IAHQEERDAISSKIEVSQAHLE 297 (442)
Q Consensus 276 ~~~~eE~~sl~~q~~~~q~qLd 297 (442)
...+.++.+.+++++.++.+|+
T Consensus 108 ~~a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 108 QQANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444455555555555443
No 125
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=43.57 E-value=96 Score=32.56 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
|.++-+.|.++|+++|.+..++++++..+
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666665555555443
No 126
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=43.55 E-value=68 Score=32.01 Aligned_cols=15 Identities=13% Similarity=0.461 Sum_probs=11.7
Q ss_pred CCCChhhHHHHHHHH
Q 013502 331 IPVEWDEINAAWGQA 345 (442)
Q Consensus 331 ~~V~W~EINAAwGQ~ 345 (442)
-.-.|.|-=.++|..
T Consensus 126 F~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 126 FTRDWVSYREGFGYL 140 (323)
T ss_dssp CCCCHHHHHHCEEEE
T ss_pred ccCCHHHHhhhhCCc
Confidence 345899998898876
No 127
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=43.52 E-value=38 Score=22.54 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 234 EETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 234 eeLEkE~~~l~~El~~le~e~~~L 257 (442)
+.||+.++.++..+..++.+.+.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444333
No 128
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=42.93 E-value=1.4e+02 Score=26.56 Aligned_cols=44 Identities=5% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 013502 271 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 314 (442)
Q Consensus 271 ~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktN-V~Nd~F~I~hd 314 (442)
++.+...+..++.....++..|....+||+|-+ -+=-+|++-|.
T Consensus 43 ~E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 43 CENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred hHHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 344445556667777888999999999999873 23334555444
No 129
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.81 E-value=1.2e+02 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 013502 230 EAAIEETEKQN 240 (442)
Q Consensus 230 ~~eLeeLEkE~ 240 (442)
.++|+.+|++.
T Consensus 57 ~~ei~~le~~i 67 (84)
T 1gmj_A 57 AKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 130
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.64 E-value=36 Score=23.63 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le 251 (442)
-....+.|++++++...|++++..||
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 34556778888888888887776553
No 131
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=42.40 E-value=3.4e+02 Score=28.91 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhc
Q 013502 286 SSKIEVSQAHLELLKRT 302 (442)
Q Consensus 286 ~~q~~~~q~qLdkLrkt 302 (442)
..+....+++++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455666777777776
No 132
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.38 E-value=1.6e+02 Score=25.08 Aligned_cols=44 Identities=11% Similarity=0.312 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 273 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~ 273 (442)
.++|.+...+.+++.+++.+++.....++.+-.=||....+.+.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555554455555544443
No 133
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=42.08 E-value=49 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
++..+...|+.|-..|..+|++|++|...|..-+.
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666666666665555444
No 134
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.33 E-value=69 Score=32.72 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
-..|..||.++.++.+++.++++.++.+.+.+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666655555444333
No 135
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.07 E-value=1.7e+02 Score=24.61 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 236 TEKQNAEVNAELKEL 250 (442)
Q Consensus 236 LEkE~~~l~~El~~l 250 (442)
.|+++..+..|+++|
T Consensus 45 aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 45 AEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 136
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=39.36 E-value=79 Score=32.22 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 249 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~ 249 (442)
..++..+.++-+++..++++|..++.++.++|..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667778888888888888888888888765
No 137
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=39.30 E-value=3.8e+02 Score=28.55 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 013502 172 ECMRVLSDKLDKEV 185 (442)
Q Consensus 172 ECtd~Lle~Ld~ql 185 (442)
+.-..|.+.++..+
T Consensus 379 ~~~~~L~~~i~~~~ 392 (592)
T 1f5n_A 379 LFQKELAAQLEKKR 392 (592)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 138
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.06 E-value=3.1e+02 Score=28.14 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhcCCCcc
Q 013502 344 QACLLLHTMCQYFRPKFP 361 (442)
Q Consensus 344 Q~~LLL~tla~kl~~~F~ 361 (442)
|-=.|+.+++..+-..+.
T Consensus 184 qqKQL~qv~a~~llP~~~ 201 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSRD 201 (390)
T ss_pred HHHHHHhhhhhccccccc
Confidence 334488888887655553
No 139
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=39.03 E-value=3.8e+02 Score=28.41 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 231 AAIEETEKQNAEVNAELKELELKS----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~----~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
+.+.+...+.+++.+|.++++.+- ...+..-++|-+++..++.++.+.+.++..-+......+..|+.+.+
T Consensus 34 ~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 34 AAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555544444322 22333444677777777777777766665443333333334444433
No 140
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=38.96 E-value=1.5e+02 Score=23.65 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 231 AAIEETEKQNAEVNAELKELELKSKRFKELEE 262 (442)
Q Consensus 231 ~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe 262 (442)
..+..+.+|.+++.+.++.++.+...+.++|.
T Consensus 4 k~v~~l~~E~eel~~klk~~~ee~~~~~eee~ 35 (71)
T 1uix_A 4 SDVANLANEKEELNNKLKEAQEQLSRLKDEEI 35 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665554443
No 141
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.79 E-value=1.8e+02 Score=24.72 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEV 243 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l 243 (442)
++...|..|+.+.+.+
T Consensus 42 elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQ 57 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 142
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.66 E-value=1.9e+02 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEA 194 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~ 194 (442)
|.+|+.|+.+++.+..|.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777776666555444
No 143
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.40 E-value=49 Score=24.68 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
-..|..|+.+|..+.+.|.+++.++..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 144
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.30 E-value=3.4e+02 Score=27.76 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 272 QFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 272 q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
..++..++..+.++..+++..+.++..|..
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 104 ENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666654
No 145
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=38.20 E-value=2e+02 Score=25.03 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQRL 202 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~L 202 (442)
|+.+.+.+..+...+..-...|
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL 55 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEEL 55 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 5555555555555444443333
No 146
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=38.15 E-value=67 Score=21.64 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 232 AIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 232 eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
|+..|.+|.+.+..|+..++-|...|+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554443
No 147
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.85 E-value=1.9e+02 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 255 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 288 (442)
Q Consensus 255 ~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q 288 (442)
..|.++-..|-+-.++.+.+|..+...+..|..+
T Consensus 59 ~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 59 ILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666777666666655444
No 148
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=37.80 E-value=98 Score=31.44 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhcccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 181 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA--DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 258 (442)
Q Consensus 181 Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e--~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~ 258 (442)
++.+++++++||+....-|+..+.......++. +....+..+.+++..|.+||..+ .+++-+..-|.+..... ++-
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l-~~LK~Vs~Li~EfktN~-ell 91 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL-DNLKTFLNLIKEVKTNL-NIL 91 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhhH-HHH
Confidence 789999999999999999988764211000111 12223334555666666666444 23444444444444432 344
Q ss_pred HHHHHHHHHHH
Q 013502 259 ELEERYWQEFN 269 (442)
Q Consensus 259 eeEe~~W~e~N 269 (442)
|.|.-|+.-.|
T Consensus 92 ElENCyYSLqn 102 (355)
T 3etv_A 92 ELENCYYSLQS 102 (355)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666665444
No 149
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.63 E-value=86 Score=23.39 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEV 243 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l 243 (442)
.|+.+-..|..++..|+.|...|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 150
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=37.20 E-value=56 Score=23.62 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~ 248 (442)
...|+.||+.+|+..+.+...+.
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555554443
No 151
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.79 E-value=60 Score=22.85 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 233 IEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 233 LeeLEkE~~~l~~El~~le~e~~~L 257 (442)
=+.|.++.+.-+.||..|+.+..+|
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555555555666665554444
No 152
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.36 E-value=44 Score=26.64 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 220 LKIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 220 ~~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
..|+.++.++..+++.|..+...|.+++.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666666777777777666666665554
No 153
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=36.15 E-value=2e+02 Score=24.40 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 224 EEERKLEAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 224 ~EE~~L~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
.|...|.=+++-|....+++++.+..+..+.
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 154
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.97 E-value=1.6e+02 Score=23.38 Aligned_cols=6 Identities=17% Similarity=0.257 Sum_probs=2.1
Q ss_pred HHHHHH
Q 013502 233 IEETEK 238 (442)
Q Consensus 233 LeeLEk 238 (442)
++.++.
T Consensus 74 ~e~i~~ 79 (107)
T 1fxk_A 74 LETLQL 79 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 155
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=35.69 E-value=40 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~ 248 (442)
.|+.+...|..++++|..+...|.+++.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666665555555544
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=35.46 E-value=1e+02 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAE 242 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~ 242 (442)
.|+.+-..|..++..|..+...
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444444444444333
No 157
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=35.41 E-value=2.5e+02 Score=25.22 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=9.1
Q ss_pred HHHHHHHHhhcccCCCc
Q 013502 292 SQAHLELLKRTNVLNDA 308 (442)
Q Consensus 292 ~q~qLdkLrktNV~Nd~ 308 (442)
....+.+|..-|-+.++
T Consensus 99 LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44556667666655544
No 158
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=35.30 E-value=25 Score=35.94 Aligned_cols=91 Identities=13% Similarity=0.260 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 293 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q 293 (442)
++..++..|.++-+++..++++|..++.++.++|..+....++. +....+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567777888888999999999999999888887654322110 1122333334444444444444444433222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 013502 294 AHLELLKRTNVLNDAFPIWH 313 (442)
Q Consensus 294 ~qLdkLrktNV~Nd~F~I~h 313 (442)
.|+=-|+.++.=.++.
T Consensus 102 ----~~~ipN~~~~~vp~g~ 117 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVGE 117 (425)
T ss_dssp ----HHTSCCCCCTTSCCCS
T ss_pred ----HHhCCCCCCCCCCCCC
Confidence 2344577766555544
No 159
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=35.26 E-value=1.7e+02 Score=23.28 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
+.+.|+++|.+...++..+..++...+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4566667777777666666666654433
No 160
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.91 E-value=57 Score=26.37 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
+..|+.++..+..+++.|.++...|..+|.+|
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777777777777777777666654
No 161
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.94 E-value=1.6e+02 Score=28.46 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELK 253 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e 253 (442)
++++...++..++.++++++.++++++..++..
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666667777777777777777776665
No 162
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.11 E-value=2e+02 Score=22.86 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeE 261 (442)
.|...+..+.+|.+++...++.++.+...+.++|
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee 36 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEE 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777777777666665444
No 163
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.72 E-value=4.8e+02 Score=27.21 Aligned_cols=16 Identities=25% Similarity=0.642 Sum_probs=11.8
Q ss_pred CCCCChhhHHHHHHHH
Q 013502 330 KIPVEWDEINAAWGQA 345 (442)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (442)
+--=.|+|-=.++|.+
T Consensus 266 ~F~R~W~~Yk~GFG~~ 281 (464)
T 1m1j_B 266 NFGRAWDEYKRGFGNI 281 (464)
T ss_dssp CCCCCHHHHHHCEECC
T ss_pred ccccCHHHHHHHhCCc
Confidence 3345799988888875
No 164
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=30.58 E-value=2.4e+02 Score=23.58 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 013502 285 ISSKIEVSQAHLELLKRT 302 (442)
Q Consensus 285 l~~q~~~~q~qLdkLrkt 302 (442)
+....+..+.+|..|++-
T Consensus 66 l~~eKe~L~~ql~~lq~q 83 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQRE 83 (94)
T ss_dssp HHHTTSHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 165
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.50 E-value=2.7e+02 Score=23.88 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEET 236 (442)
Q Consensus 222 LE~EE~~L~~eLeeL 236 (442)
|..|...|..+|+.+
T Consensus 20 Lkreie~lk~ele~l 34 (120)
T 3i00_A 20 LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 166
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.32 E-value=2.4e+02 Score=23.24 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 265 WQEFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 265 W~e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
|.+...+..++..+..|++.+..+|+
T Consensus 61 ~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 61 IQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555544
No 167
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.17 E-value=2.4e+02 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.322 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
-+.+.++|+++|.+..++++++.++
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666665555544
No 168
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.10 E-value=1.4e+02 Score=26.43 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 013502 182 DKEVDDVTRDIEAYE 196 (442)
Q Consensus 182 d~qle~~~~E~d~Y~ 196 (442)
...+...+..+..|.
T Consensus 21 ~~~~~~le~l~~~l~ 35 (135)
T 2e7s_A 21 KAAIENYNQLKEDYN 35 (135)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444333333
No 169
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.73 E-value=2e+02 Score=22.05 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
+.+|++--..|...++.||..+.+.++|+..|.+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667888888888888888888776654
No 170
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.71 E-value=2.8e+02 Score=23.76 Aligned_cols=22 Identities=9% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~ 200 (442)
.+|+.+++.+..+++.-+.|++
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 171
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.67 E-value=87 Score=32.05 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.3
Q ss_pred CCChhhH
Q 013502 332 PVEWDEI 338 (442)
Q Consensus 332 ~V~W~EI 338 (442)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4889877
No 172
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.45 E-value=2.8e+02 Score=23.72 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELK 248 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~ 248 (442)
...+.+++.+|++.++.|+..+.
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333
No 173
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.34 E-value=2.4e+02 Score=22.96 Aligned_cols=8 Identities=13% Similarity=0.605 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 013502 180 KLDKEVDD 187 (442)
Q Consensus 180 ~Ld~qle~ 187 (442)
+|+.-++.
T Consensus 14 eLQSALea 21 (81)
T 1wt6_A 14 ELQEALEE 21 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 174
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=28.16 E-value=68 Score=26.11 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
+..|+..++.+++|||-|-.-|+.++
T Consensus 10 i~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 10 LVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999988776
No 175
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=28.09 E-value=3.7e+02 Score=25.02 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013502 265 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 304 (442)
Q Consensus 265 W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrktNV 304 (442)
..+|..|-.--..+.-+...+..++..-..||+.|+.+=|
T Consensus 147 l~DY~~fv~mKa~Ll~eqReLddkIklgeEQL~~L~~sL~ 186 (190)
T 3thf_A 147 CADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDALV 186 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHhhc
Confidence 3455555555555566777888999999999999987644
No 176
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.97 E-value=47 Score=21.65 Aligned_cols=10 Identities=30% Similarity=0.547 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 013502 242 EVNAELKELE 251 (442)
Q Consensus 242 ~l~~El~~le 251 (442)
++.+|+..++
T Consensus 11 rlkqeiaale 20 (28)
T 3ra3_B 11 RLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 177
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.58 E-value=69 Score=32.66 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARD----VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~----~~s~e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
+.+++ |+.+...+..+.+..++--+.+.++... ....+.+. ++-+.+..+|+++|.+..++++++..+
T Consensus 30 ~~~~~-~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 30 DKVLE-LDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQ-------NRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTST-------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 6666666666666655555554433211 00111222 333444455555555555555555444
No 178
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=27.48 E-value=1.2e+02 Score=29.18 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKL 220 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~--~~~~s~e~l~~El~ 220 (442)
++.|++|-..++...+.|..-|..+.+.. ++.++.+++.+++.
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~ 88 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMK 88 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHH
Confidence 45566666666666677777777665432 23445555554443
No 179
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=27.01 E-value=39 Score=26.93 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeE 261 (442)
-.-+..-|.+-|...+.|.++++-|+.|+.+++..+
T Consensus 31 ~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 31 ADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 334455556666677777777777777776666444
No 180
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=26.88 E-value=3.6e+02 Score=24.48 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 013502 176 VLSDKLD 182 (442)
Q Consensus 176 ~Lle~Ld 182 (442)
.+.+.++
T Consensus 112 ~~~~~~~ 118 (251)
T 2fic_A 112 KIAENND 118 (251)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334343
No 181
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=26.67 E-value=1.2e+02 Score=29.26 Aligned_cols=29 Identities=7% Similarity=-0.032 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 218 EKLKIEEEERKLEAAIEETEKQNAEVNAE 246 (442)
Q Consensus 218 El~~LE~EE~~L~~eLeeLEkE~~~l~~E 246 (442)
.+.++..+...+.+++.+|+.+..++.+.
T Consensus 100 ~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 100 VLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444444444444
No 182
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.65 E-value=3e+02 Score=23.48 Aligned_cols=16 Identities=13% Similarity=0.229 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 013502 281 ERDAISSKIEVSQAHL 296 (442)
Q Consensus 281 E~~sl~~q~~~~q~qL 296 (442)
+..++++++...+.+|
T Consensus 83 ~Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 83 AVSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 183
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=26.51 E-value=96 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
...|..+++.|+.+...|..++..|..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555543
No 184
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.51 E-value=2.8e+02 Score=23.85 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 219 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 256 (442)
Q Consensus 219 l~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~ 256 (442)
+.-++...+.+...++.+++..+.+.+++..++....+
T Consensus 100 ~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 100 ISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555566666666666666666666655554433
No 185
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.13 E-value=1.2e+02 Score=25.53 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=10.2
Q ss_pred HhhcccCCCceeeeecCCeee
Q 013502 299 LKRTNVLNDAFPIWHDGEFGT 319 (442)
Q Consensus 299 LrktNV~Nd~F~I~hdG~fGT 319 (442)
|++...|.+-.-|--..|-||
T Consensus 56 i~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 56 LRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHTTSCTTTEEEEEEECCTTC
T ss_pred HhcCcCCCcCeEEEEECCCCC
Confidence 444444554444555555444
No 186
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.90 E-value=1.6e+02 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
+..|...+...|..+|.++.++.+++...-.+...|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~L 38 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 187
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.85 E-value=3.3e+02 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 261 EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 261 Ee~~W~e~N~~q~qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
++.+-+..+.++.....++.++..++..+.....+.++++.
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666667777777777777776666654
No 188
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=25.40 E-value=4.5e+02 Score=25.12 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhcccCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~fL~~Le~e~~~~~s~e~l~~El~~LE~EE~~L~------~eLeeLEkE~~~l~~El~~le 251 (442)
+.++-...+.-..--+.|...|+.+..... +-........++..+..+|. ..|..||+|+...+++..-.|
T Consensus 75 l~e~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaE 151 (234)
T 3plt_A 75 IYELGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAE 151 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHH
Confidence 333333334444455668888888764211 11112222233333333333 345566666655555554444
Q ss_pred HHHH
Q 013502 252 LKSK 255 (442)
Q Consensus 252 ~e~~ 255 (442)
+++.
T Consensus 152 AqL~ 155 (234)
T 3plt_A 152 AQLS 155 (234)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 189
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.20 E-value=1.3e+02 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 250 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~l 250 (442)
.+|+.++|........+|..|+...+.++..|.+|
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333333344444444444333333333
No 190
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=25.14 E-value=3.5e+02 Score=23.78 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 013502 182 DKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 182 d~qle~~~~E~d~Y~~fL~~Le 203 (442)
..+|+.+++.-+.=.+-.+.|+
T Consensus 23 ~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 23 LQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444455454
No 191
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.02 E-value=1.2e+02 Score=23.78 Aligned_cols=25 Identities=40% Similarity=0.472 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELKS 254 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e~ 254 (442)
...+.+||.++..-+++|..|+.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666665443
No 192
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=24.72 E-value=3.5e+02 Score=24.22 Aligned_cols=17 Identities=24% Similarity=0.227 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETE 237 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLE 237 (442)
.++.+..+|..+...++
T Consensus 37 ~le~e~~kl~~e~~i~e 53 (146)
T 2xnx_M 37 EKELEEKKKALELAIDQ 53 (146)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 193
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.60 E-value=1.5e+02 Score=21.40 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le 251 (442)
..||...|++..++...+++|+
T Consensus 15 drEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444
No 194
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.47 E-value=3.1e+02 Score=22.93 Aligned_cols=25 Identities=16% Similarity=0.470 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 013502 179 DKLDKEVDDVTRDIEAYEACLQRLE 203 (442)
Q Consensus 179 e~Ld~qle~~~~E~d~Y~~fL~~Le 203 (442)
+.+..++..++.+...+..-+++|.
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~ 32 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLR 32 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455566666655555555555543
No 195
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.90 E-value=5.8e+02 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=9.3
Q ss_pred eccccCCCCCCCCCChhhHHHHH
Q 013502 320 INNFRLGRLPKIPVEWDEINAAW 342 (442)
Q Consensus 320 INGlRLGrlp~~~V~W~EINAAw 342 (442)
|+..+-|--| .+++..+.+..+
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~~ 308 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSADL 308 (486)
T ss_dssp HHHHSTTSCC-CCCCC-------
T ss_pred HHHhCCCCCC-CCCCceeCCchh
Confidence 6666777555 366666655544
No 196
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=23.52 E-value=2.7e+02 Score=25.39 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013502 274 QLIAHQEERDAISSKIEVSQAHLELLKR 301 (442)
Q Consensus 274 qL~~~~eE~~sl~~q~~~~q~qLdkLrk 301 (442)
++.+.+.+....+++++.++.+|+.++.
T Consensus 99 ~~~~a~~~~~~a~a~l~~a~a~l~~a~~ 126 (277)
T 2f1m_A 99 EYDQALADAQQANAAVTAAKAAVETARI 126 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888876654
No 197
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=23.32 E-value=2.2e+02 Score=28.53 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--cccCCHHHHHHHHHHH
Q 013502 175 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 222 (442)
Q Consensus 175 d~Lle~Ld~qle~~~~E~d~Y~~fL~~Le~e~--~~~~s~e~l~~El~~L 222 (442)
+.=++.|++|-..++...+.|..-|....+.. ++.++.+++.+++.++
T Consensus 24 ~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 24 EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 33456667777777777777887777665432 3345566655544444
No 198
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.25 E-value=2.2e+02 Score=28.34 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=9.1
Q ss_pred ccCCCceeeeecC
Q 013502 303 NVLNDAFPIWHDG 315 (442)
Q Consensus 303 NV~Nd~F~I~hdG 315 (442)
-++..++.|.+.+
T Consensus 311 ~~lAgal~~~~~~ 323 (426)
T 1lrz_A 311 LPISAGFFFINPF 323 (426)
T ss_dssp EEEEEEEEEECSS
T ss_pred ceeEEEEEEEECC
Confidence 4677788777654
No 199
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.16 E-value=4e+02 Score=23.74 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=16.2
Q ss_pred HHHHHHHHH-hhcccCCCceeeeecCCeeeeccccCCC
Q 013502 291 VSQAHLELL-KRTNVLNDAFPIWHDGEFGTINNFRLGR 327 (442)
Q Consensus 291 ~~q~qLdkL-rktNV~Nd~F~I~hdG~fGTINGlRLGr 327 (442)
|...+.+.| .+.- +.+-+||+| |||.|.
T Consensus 71 y~e~~r~elf~k~K--------t~~l~~G~v-~~R~~~ 99 (171)
T 2p2u_A 71 FATLNKTEMFKDRK--------SLDLGFGTI-GFRLST 99 (171)
T ss_dssp HHHHTHHHHCC-----------CCBCSSCBC-CCCCCC
T ss_pred HHHHhHHHhcCCCe--------EEEeCCEEE-EEEeCC
Confidence 555666666 3221 234567887 899985
No 200
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.89 E-value=4.3e+02 Score=24.02 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 226 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 284 (442)
Q Consensus 226 E~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~s 284 (442)
-+.|...|.+++.....|.++|+...+....++ ++.|+++=++..+...+|.
T Consensus 98 ~e~LksRL~~l~~sk~~L~e~L~~q~~~~relE-------RemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 98 SERLKSRIAEIHESRTKLEQELRAQASDNREID-------KRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHH
Confidence 345667777777777777777666555444333 6778888888887777765
No 201
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.82 E-value=1.6e+02 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 216 LKEKLKIEEEERKLEAAIEETEKQNAEVN 244 (442)
Q Consensus 216 ~~El~~LE~EE~~L~~eLeeLEkE~~~l~ 244 (442)
......|+.|-..|..+++.|++|...|.
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555554443
No 202
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.51 E-value=91 Score=30.25 Aligned_cols=31 Identities=6% Similarity=0.018 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 013502 280 EERDAISSKIEVSQAHLELLKRTNVLNDAFP 310 (442)
Q Consensus 280 eE~~sl~~q~~~~q~qLdkLrktNV~Nd~F~ 310 (442)
+++..+..++...+.+|++|+..-.+=.+|-
T Consensus 75 ~~Lk~ar~El~~LkeElerL~sPPL~iGtvl 105 (251)
T 3m9b_A 75 ETLKEARQQLLALREEVDRLGQPPSGYGVLL 105 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 3344445556777788999998776665553
No 203
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.25 E-value=3.2e+02 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
.+..+|..-.++.+.++.+|...+..+..|
T Consensus 48 kl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555554444444333
No 204
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=22.21 E-value=14 Score=28.91 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=15.6
Q ss_pred CCCccccCCCCCceecccCCcc
Q 013502 9 KGRTLSVDPNVPRWVCQNCRHF 30 (442)
Q Consensus 9 ~~~~~~~~~~~~~~~Cq~C~~~ 30 (442)
+|.+..| |++|.|.|+.|--.
T Consensus 25 ~G~~~~I-~~Vp~~~C~~CGE~ 45 (78)
T 3ga8_A 25 RGRKTVL-KGIHGLYCVHCEES 45 (78)
T ss_dssp TTEEEEE-EEEEEEEETTTCCE
T ss_pred CCEEEEE-cCceeEECCCCCCE
Confidence 5566555 78899999999754
No 205
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.21 E-value=89 Score=23.43 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQN 240 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~ 240 (442)
|+.+-..|..++..|+.|.
T Consensus 34 L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 206
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.03 E-value=6.6e+02 Score=25.82 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=11.7
Q ss_pred CCCCChhhHHHHHHHH
Q 013502 330 KIPVEWDEINAAWGQA 345 (442)
Q Consensus 330 ~~~V~W~EINAAwGQ~ 345 (442)
+--=.|.|-=.++|.+
T Consensus 203 dF~R~W~eYk~GFG~l 218 (411)
T 3ghg_C 203 DFKKNWIQYKEGFGHL 218 (411)
T ss_dssp CCCCCHHHHHHCEEEE
T ss_pred cccCCHHHHhcccCCc
Confidence 3345799998888865
No 207
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=21.97 E-value=4.2e+02 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 252 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~ 252 (442)
+.+.+....|....+.|..++..++++...+..+|+.+-.
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567777777777777777777777777765544
No 208
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.92 E-value=4.5e+02 Score=23.81 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 013502 184 EVDDVTRDIEAYEACLQ 200 (442)
Q Consensus 184 qle~~~~E~d~Y~~fL~ 200 (442)
.+..+.+-++.|....+
T Consensus 134 ~~~~l~Kak~~Y~~~c~ 150 (276)
T 2v0o_A 134 ITQALQKSKENYNAKCV 150 (276)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444543333
No 209
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.90 E-value=14 Score=35.36 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 213 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 274 (442)
Q Consensus 213 e~l~~El~~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeEe~~W~e~N~~q~q 274 (442)
+++.++.+.+..+.+.|.+++++++.+.+++.+++.+.+.+.....+...+..+.....+++
T Consensus 144 ~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~ 205 (250)
T 2ve7_C 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205 (250)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceee
No 210
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.84 E-value=2.9e+02 Score=25.97 Aligned_cols=8 Identities=13% Similarity=-0.051 Sum_probs=3.5
Q ss_pred eeeccccc
Q 013502 382 TYELTLQN 389 (442)
Q Consensus 382 ~y~Ly~s~ 389 (442)
+...+-.|
T Consensus 189 Vv~V~qkG 196 (213)
T 4ani_A 189 VVEELQKG 196 (213)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 44444443
No 211
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.81 E-value=49 Score=32.94 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=11.4
Q ss_pred CCChhhHHHHHHHH
Q 013502 332 PVEWDEINAAWGQA 345 (442)
Q Consensus 332 ~V~W~EINAAwGQ~ 345 (442)
-=.|.|-=.+.|..
T Consensus 118 ~R~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 118 KKNWIQYKEGFGHL 131 (319)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred ecCHHHHhHhhCCc
Confidence 34799999999876
No 212
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.70 E-value=1.5e+02 Score=22.60 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 230 EAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 230 ~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
.+.+.+||.+.+.|..+-..|..+...|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444333
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.67 E-value=87 Score=25.73 Aligned_cols=25 Identities=12% Similarity=0.298 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 214 DFLKEKLKIEEEERKLEAAIEETEK 238 (442)
Q Consensus 214 ~l~~El~~LE~EE~~L~~eLeeLEk 238 (442)
.+..++..|+++...|.+++.+++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555444443
No 214
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.23 E-value=7.4e+02 Score=26.11 Aligned_cols=79 Identities=13% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 222 IEEEERKLEAAIEETEKQNAEV-----------NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 290 (442)
Q Consensus 222 LE~EE~~L~~eLeeLEkE~~~l-----------~~El~~le~e~~~L~eeEe~~W~e~N~~q~qL~~~~eE~~sl~~q~~ 290 (442)
|.+.|+.....|++|.+.+.++ ..-...+....++.++.|..|-+.-.+++.++..+++..+.--.++.
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~Ir 135 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIK 135 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHh
Q 013502 291 VSQAHLELLK 300 (442)
Q Consensus 291 ~~q~qLdkLr 300 (442)
..+..|+.++
T Consensus 136 vLq~~l~~q~ 145 (491)
T 1m1j_A 136 ALQNSIQEQV 145 (491)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 215
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=20.94 E-value=4.2e+02 Score=23.18 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 013502 178 SDKLDKEVDDVTRDIEAYEA 197 (442)
Q Consensus 178 le~Ld~qle~~~~E~d~Y~~ 197 (442)
.+.|+++-++...|+..|.+
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777754
No 216
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=20.75 E-value=1.7e+02 Score=22.95 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 221 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 261 (442)
Q Consensus 221 ~LE~EE~~L~~eLeeLEkE~~~l~~El~~le~e~~~L~eeE 261 (442)
+|..+-..|..+|..+|..-.-.. ++..|+.+...|+++=
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI 60 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEI 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHH
Confidence 344555556666666555433233 5555555444444333
No 217
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.57 E-value=4.6e+02 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 269 NNFQFQLIAHQEERDAISSKIEVS 292 (442)
Q Consensus 269 N~~q~qL~~~~eE~~sl~~q~~~~ 292 (442)
..++.++.+...-++++..|+...
T Consensus 118 ~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 118 KRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445554444433
No 218
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=20.48 E-value=4.6e+02 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 013502 229 LEAAIEETEKQNAEVNAELKELE 251 (442)
Q Consensus 229 L~~eLeeLEkE~~~l~~El~~le 251 (442)
+.+.+..++.|+++|+-+...+.
T Consensus 34 l~~~i~q~d~elqQLefq~kr~~ 56 (150)
T 4dci_A 34 ISNGIANADQQLAQLEQEGQTVV 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444433
No 219
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.37 E-value=2.7e+02 Score=20.65 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013502 228 KLEAAIEETEKQNAEVNAELKELELKSKRF 257 (442)
Q Consensus 228 ~L~~eLeeLEkE~~~l~~El~~le~e~~~L 257 (442)
.|..++..|.+..++|.+.+.+...++..|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555445555554444444444444
Done!