Query 013503
Match_columns 442
No_of_seqs 474 out of 1877
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0110 RNA-binding protein (R 100.0 1.6E-37 3.4E-42 325.7 15.5 322 104-431 322-693 (725)
2 TIGR01659 sex-lethal sex-letha 100.0 3E-29 6.5E-34 254.8 27.0 169 251-434 102-278 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-29 2.6E-34 257.0 19.3 252 160-431 11-349 (352)
4 TIGR01645 half-pint poly-U bin 100.0 1.7E-27 3.6E-32 254.8 21.8 178 254-435 105-288 (612)
5 TIGR01622 SF-CC1 splicing fact 99.9 1.4E-26 3.1E-31 242.9 23.0 176 253-431 86-266 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1E-26 2.3E-31 235.5 20.7 163 255-432 2-172 (352)
7 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-26 2.4E-31 250.3 18.4 243 159-432 7-262 (562)
8 TIGR01628 PABP-1234 polyadenyl 99.9 6.7E-26 1.5E-30 244.2 19.5 161 258-431 2-167 (562)
9 KOG0148 Apoptosis-promoting RN 99.9 7.5E-26 1.6E-30 215.3 16.8 173 256-435 62-242 (321)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.3E-25 4.9E-30 236.2 22.1 174 254-431 273-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.9E-24 1.5E-28 225.4 21.6 175 252-431 171-375 (509)
12 KOG0144 RNA-binding protein CU 99.9 1.4E-24 3.1E-29 217.4 12.6 169 252-434 30-209 (510)
13 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.4E-23 3.1E-28 222.5 20.7 167 256-431 2-174 (481)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-23 8.5E-28 219.6 24.0 176 254-430 293-501 (509)
15 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-23 2.9E-28 224.4 19.7 233 160-434 66-310 (578)
16 KOG0117 Heterogeneous nuclear 99.9 6.8E-24 1.5E-28 213.4 16.1 178 254-438 81-338 (506)
17 KOG0123 Polyadenylate-binding 99.9 7.9E-24 1.7E-28 216.5 14.5 233 162-430 8-245 (369)
18 KOG0131 Splicing factor 3b, su 99.9 5.5E-24 1.2E-28 192.6 11.7 166 255-434 8-180 (203)
19 KOG0145 RNA-binding protein EL 99.9 8.8E-24 1.9E-28 200.2 12.6 166 254-434 39-212 (360)
20 TIGR01622 SF-CC1 splicing fact 99.9 6.3E-23 1.4E-27 215.4 18.8 248 160-430 97-447 (457)
21 KOG0127 Nucleolar protein fibr 99.9 4.1E-22 8.9E-27 204.5 20.1 174 256-430 117-377 (678)
22 TIGR01648 hnRNP-R-Q heterogene 99.9 3.4E-22 7.4E-27 213.7 19.0 159 253-432 55-223 (578)
23 KOG0145 RNA-binding protein EL 99.9 3E-22 6.5E-27 189.8 15.4 245 160-430 49-357 (360)
24 KOG0123 Polyadenylate-binding 99.9 4.8E-22 1E-26 203.4 16.1 150 257-431 2-153 (369)
25 KOG0127 Nucleolar protein fibr 99.9 6.4E-22 1.4E-26 203.1 16.2 175 256-431 5-196 (678)
26 KOG0124 Polypyrimidine tract-b 99.9 1.8E-21 3.8E-26 191.6 12.9 177 255-435 112-294 (544)
27 KOG0109 RNA-binding protein LA 99.8 5.7E-21 1.2E-25 183.7 10.7 149 258-435 4-154 (346)
28 TIGR01645 half-pint poly-U bin 99.8 3.1E-19 6.7E-24 191.5 21.3 158 159-331 114-282 (612)
29 KOG0147 Transcriptional coacti 99.8 1.1E-19 2.5E-24 187.4 8.0 179 250-432 173-359 (549)
30 KOG0148 Apoptosis-promoting RN 99.8 1.8E-18 3.9E-23 165.2 11.2 138 253-432 3-143 (321)
31 KOG0144 RNA-binding protein CU 99.8 1.1E-18 2.3E-23 175.4 10.1 256 160-434 42-507 (510)
32 KOG4205 RNA-binding protein mu 99.7 8.4E-18 1.8E-22 167.5 10.7 169 255-432 5-177 (311)
33 KOG0146 RNA-binding protein ET 99.7 2.7E-17 5.9E-22 156.8 12.1 183 252-435 15-369 (371)
34 KOG0105 Alternative splicing f 99.7 9.3E-16 2E-20 139.6 13.8 157 255-419 5-176 (241)
35 KOG4211 Splicing factor hnRNP- 99.6 4E-15 8.6E-20 152.3 15.5 170 253-428 7-179 (510)
36 KOG4206 Spliceosomal protein s 99.6 1.1E-14 2.4E-19 136.7 15.2 168 257-429 10-220 (221)
37 PLN03134 glycine-rich RNA-bind 99.6 9.9E-15 2.1E-19 131.1 11.7 81 352-433 33-116 (144)
38 KOG0147 Transcriptional coacti 99.6 1.3E-14 2.8E-19 150.3 12.3 166 259-428 281-525 (549)
39 KOG0110 RNA-binding protein (R 99.6 3.7E-14 8E-19 150.4 14.0 172 253-429 382-596 (725)
40 KOG1548 Transcription elongati 99.6 1.9E-13 4.2E-18 134.8 17.8 179 248-429 126-350 (382)
41 TIGR01659 sex-lethal sex-letha 99.5 1.8E-14 4E-19 146.7 9.7 154 160-332 115-274 (346)
42 PLN03134 glycine-rich RNA-bind 99.5 6.1E-14 1.3E-18 126.1 11.3 78 255-332 33-113 (144)
43 KOG4212 RNA-binding protein hn 99.5 9.8E-13 2.1E-17 132.9 18.2 174 255-429 43-292 (608)
44 PF00076 RRM_1: RNA recognitio 99.5 1.1E-13 2.4E-18 106.8 8.6 68 259-326 1-70 (70)
45 KOG0106 Alternative splicing f 99.5 5.2E-14 1.1E-18 133.1 7.0 157 258-427 3-167 (216)
46 PF00076 RRM_1: RNA recognitio 99.5 2.6E-13 5.6E-18 104.8 9.7 68 356-424 1-70 (70)
47 KOG1457 RNA binding protein (c 99.4 1.4E-12 3E-17 122.1 14.2 165 251-418 29-273 (284)
48 COG0724 RNA-binding proteins ( 99.4 1.3E-12 2.7E-17 123.8 13.8 156 256-412 115-285 (306)
49 KOG0124 Polypyrimidine tract-b 99.4 1.1E-12 2.3E-17 130.1 13.0 259 158-428 119-532 (544)
50 KOG1190 Polypyrimidine tract-b 99.4 4.1E-12 8.8E-17 127.7 15.9 169 256-431 297-491 (492)
51 PLN03120 nucleic acid binding 99.4 1.2E-12 2.5E-17 127.0 10.8 78 255-333 3-80 (260)
52 PLN03120 nucleic acid binding 99.4 1.4E-12 3.1E-17 126.4 11.4 77 353-431 4-80 (260)
53 PF14259 RRM_6: RNA recognitio 99.4 3.5E-12 7.5E-17 99.4 9.7 68 356-424 1-70 (70)
54 KOG0125 Ataxin 2-binding prote 99.4 1.8E-12 3.8E-17 127.2 9.6 81 352-433 95-176 (376)
55 KOG0121 Nuclear cap-binding pr 99.4 1.1E-12 2.5E-17 113.2 7.0 82 249-330 29-113 (153)
56 PF14259 RRM_6: RNA recognitio 99.4 4.5E-12 9.8E-17 98.8 9.2 68 259-326 1-70 (70)
57 PLN03121 nucleic acid binding 99.3 7.5E-12 1.6E-16 119.7 10.9 78 255-333 4-81 (243)
58 KOG0122 Translation initiation 99.3 3.7E-12 8E-17 120.8 8.7 78 353-431 189-269 (270)
59 smart00362 RRM_2 RNA recogniti 99.3 1.5E-11 3.2E-16 93.6 9.6 71 355-426 1-72 (72)
60 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.8E-16 93.9 8.7 71 258-328 1-72 (72)
61 KOG0120 Splicing factor U2AF, 99.3 2E-11 4.3E-16 128.0 12.5 176 253-429 286-490 (500)
62 KOG0125 Ataxin 2-binding prote 99.3 1E-11 2.2E-16 121.9 8.4 81 253-333 93-174 (376)
63 PLN03121 nucleic acid binding 99.3 2.9E-11 6.3E-16 115.7 10.9 76 353-430 5-80 (243)
64 KOG1190 Polypyrimidine tract-b 99.2 1.2E-10 2.7E-15 117.2 15.0 171 255-431 149-373 (492)
65 KOG0107 Alternative splicing f 99.2 1.2E-11 2.7E-16 112.0 7.1 75 255-332 9-84 (195)
66 KOG0122 Translation initiation 99.2 3E-11 6.5E-16 114.6 9.4 77 255-331 188-267 (270)
67 KOG1456 Heterogeneous nuclear 99.2 1.6E-10 3.4E-15 115.2 14.8 164 253-431 28-199 (494)
68 PLN03213 repressor of silencin 99.2 3.1E-11 6.8E-16 123.6 9.1 77 352-431 9-88 (759)
69 KOG0121 Nuclear cap-binding pr 99.2 2E-11 4.4E-16 105.5 6.5 78 350-428 33-113 (153)
70 KOG0114 Predicted RNA-binding 99.2 5.4E-11 1.2E-15 99.4 8.3 78 253-331 15-93 (124)
71 KOG0129 Predicted RNA-binding 99.2 2.1E-10 4.6E-15 118.7 14.3 156 251-412 254-431 (520)
72 KOG1456 Heterogeneous nuclear 99.2 2.3E-09 5E-14 107.0 20.9 174 253-430 284-490 (494)
73 KOG0111 Cyclophilin-type pepti 99.2 1.6E-11 3.5E-16 114.8 4.7 82 353-435 10-94 (298)
74 smart00360 RRM RNA recognition 99.2 1.2E-10 2.6E-15 88.1 8.7 68 358-426 1-71 (71)
75 cd00590 RRM RRM (RNA recogniti 99.2 2.5E-10 5.4E-15 87.2 10.0 72 355-427 1-74 (74)
76 PLN03213 repressor of silencin 99.2 7.7E-11 1.7E-15 120.8 8.9 77 254-332 8-87 (759)
77 KOG0149 Predicted RNA-binding 99.2 7.5E-11 1.6E-15 111.5 8.2 77 353-430 12-90 (247)
78 KOG1365 RNA-binding protein Fu 99.2 7.9E-11 1.7E-15 117.7 8.5 172 256-428 161-359 (508)
79 KOG0130 RNA-binding protein RB 99.2 4.8E-11 1E-15 104.0 6.1 77 353-430 72-151 (170)
80 KOG4207 Predicted splicing fac 99.2 5.8E-11 1.3E-15 110.2 6.8 81 352-433 12-95 (256)
81 KOG0107 Alternative splicing f 99.2 8.2E-11 1.8E-15 106.8 7.5 77 353-433 10-87 (195)
82 KOG0149 Predicted RNA-binding 99.1 6.6E-11 1.4E-15 111.9 7.2 77 255-331 11-89 (247)
83 cd00590 RRM RRM (RNA recogniti 99.1 2.6E-10 5.6E-15 87.1 9.2 72 258-329 1-74 (74)
84 smart00360 RRM RNA recognition 99.1 1.7E-10 3.8E-15 87.2 7.7 68 261-328 1-71 (71)
85 KOG0114 Predicted RNA-binding 99.1 2E-10 4.2E-15 96.1 8.2 77 352-430 17-94 (124)
86 KOG0131 Splicing factor 3b, su 99.1 4.1E-11 8.8E-16 109.4 4.5 157 160-333 17-177 (203)
87 COG0724 RNA-binding proteins ( 99.1 3.5E-10 7.6E-15 107.0 10.4 77 353-430 115-194 (306)
88 KOG4207 Predicted splicing fac 99.1 8.3E-11 1.8E-15 109.2 5.7 78 255-332 12-92 (256)
89 PF13893 RRM_5: RNA recognitio 99.1 4.7E-10 1E-14 84.0 8.2 55 370-428 1-56 (56)
90 KOG0130 RNA-binding protein RB 99.1 2E-10 4.4E-15 100.2 6.5 73 258-330 74-149 (170)
91 KOG0120 Splicing factor U2AF, 99.1 2.5E-10 5.5E-15 119.7 8.2 173 254-431 173-369 (500)
92 KOG0113 U1 small nuclear ribon 99.1 5.3E-10 1.1E-14 108.9 9.1 79 351-430 99-180 (335)
93 KOG0126 Predicted RNA-binding 99.0 4.7E-11 1E-15 108.9 0.8 76 353-429 35-113 (219)
94 KOG0113 U1 small nuclear ribon 99.0 6.4E-10 1.4E-14 108.3 8.3 78 254-331 99-179 (335)
95 KOG0117 Heterogeneous nuclear 99.0 2.6E-09 5.7E-14 108.8 12.3 119 302-430 40-163 (506)
96 KOG0126 Predicted RNA-binding 99.0 5.4E-11 1.2E-15 108.5 0.2 82 253-334 32-116 (219)
97 PF13893 RRM_5: RNA recognitio 99.0 1.6E-09 3.5E-14 81.1 7.3 55 273-330 1-56 (56)
98 smart00361 RRM_1 RNA recogniti 99.0 2.6E-09 5.7E-14 84.0 8.2 59 367-426 2-70 (70)
99 KOG0105 Alternative splicing f 99.0 9.8E-10 2.1E-14 100.6 6.1 77 353-431 6-83 (241)
100 KOG0111 Cyclophilin-type pepti 98.9 6.5E-10 1.4E-14 104.1 4.7 80 254-333 8-90 (298)
101 KOG0108 mRNA cleavage and poly 98.9 1.6E-09 3.4E-14 112.9 7.6 77 354-431 19-98 (435)
102 KOG0108 mRNA cleavage and poly 98.9 2.1E-09 4.5E-14 112.0 7.9 76 257-332 19-97 (435)
103 KOG4211 Splicing factor hnRNP- 98.9 1.2E-08 2.5E-13 105.3 12.5 171 255-427 102-354 (510)
104 KOG4454 RNA binding protein (R 98.9 4E-10 8.7E-15 105.5 0.6 138 254-419 7-151 (267)
105 smart00361 RRM_1 RNA recogniti 98.9 8.1E-09 1.8E-13 81.2 7.4 58 270-327 2-69 (70)
106 KOG4212 RNA-binding protein hn 98.8 9.5E-09 2.1E-13 104.4 7.5 77 354-430 45-123 (608)
107 KOG0109 RNA-binding protein LA 98.8 1.1E-08 2.4E-13 99.4 6.8 74 354-434 3-77 (346)
108 KOG4206 Spliceosomal protein s 98.7 3.3E-08 7.1E-13 93.4 7.6 77 354-432 10-91 (221)
109 KOG0128 RNA-binding protein SA 98.7 1.4E-09 3.1E-14 117.9 -1.8 148 255-433 666-817 (881)
110 KOG0112 Large RNA-binding prot 98.7 9.5E-09 2.1E-13 112.1 4.4 162 252-434 368-534 (975)
111 KOG4205 RNA-binding protein mu 98.7 6.5E-08 1.4E-12 97.0 9.7 230 158-415 12-256 (311)
112 KOG4210 Nuclear localization s 98.7 1.8E-08 3.9E-13 100.3 5.5 173 254-432 86-265 (285)
113 KOG0153 Predicted RNA-binding 98.6 6.5E-08 1.4E-12 96.2 7.3 79 250-332 222-302 (377)
114 KOG0146 RNA-binding protein ET 98.6 5.2E-08 1.1E-12 93.8 6.2 83 249-331 278-363 (371)
115 KOG0153 Predicted RNA-binding 98.6 9.5E-08 2.1E-12 95.0 8.0 74 352-430 227-302 (377)
116 KOG0132 RNA polymerase II C-te 98.6 8.3E-08 1.8E-12 103.5 7.1 77 350-431 418-495 (894)
117 KOG0415 Predicted peptidyl pro 98.6 7.2E-08 1.6E-12 95.9 5.9 78 352-430 238-318 (479)
118 KOG0132 RNA polymerase II C-te 98.6 2.1E-07 4.6E-12 100.4 9.2 109 254-375 419-528 (894)
119 KOG0415 Predicted peptidyl pro 98.5 1E-07 2.2E-12 94.9 6.2 77 255-331 238-317 (479)
120 KOG0151 Predicted splicing reg 98.5 5.8E-07 1.3E-11 96.2 11.8 90 254-343 172-267 (877)
121 KOG1365 RNA-binding protein Fu 98.5 4E-07 8.6E-12 91.6 9.1 166 255-426 59-238 (508)
122 KOG0226 RNA-binding proteins [ 98.5 9.9E-08 2.1E-12 91.4 4.1 164 256-428 96-267 (290)
123 KOG4676 Splicing factor, argin 98.5 7.8E-08 1.7E-12 96.8 3.4 166 256-424 7-219 (479)
124 KOG4208 Nucleolar RNA-binding 98.5 4.2E-07 9.1E-12 84.9 7.5 78 253-330 46-127 (214)
125 KOG0533 RRM motif-containing p 98.4 5.7E-07 1.2E-11 87.1 7.9 79 353-432 83-163 (243)
126 KOG4208 Nucleolar RNA-binding 98.4 5.3E-07 1.1E-11 84.2 7.2 79 353-431 49-130 (214)
127 KOG4661 Hsp27-ERE-TATA-binding 98.4 8.9E-07 1.9E-11 92.7 7.8 82 253-334 402-486 (940)
128 KOG4661 Hsp27-ERE-TATA-binding 98.3 8.9E-07 1.9E-11 92.7 7.4 83 350-433 402-487 (940)
129 KOG4660 Protein Mei2, essentia 98.3 7.4E-07 1.6E-11 93.5 6.0 171 251-430 70-249 (549)
130 KOG4307 RNA binding protein RB 98.2 1.9E-06 4.1E-11 92.2 7.1 174 254-428 309-511 (944)
131 KOG4209 Splicing factor RNPS1, 98.2 1.7E-06 3.6E-11 83.8 6.1 81 350-431 98-180 (231)
132 KOG0533 RRM motif-containing p 98.2 3.5E-06 7.5E-11 81.7 7.9 79 253-331 80-160 (243)
133 KOG0116 RasGAP SH3 binding pro 98.2 2.1E-06 4.5E-11 89.4 6.5 78 255-332 287-366 (419)
134 KOG4209 Splicing factor RNPS1, 98.2 3E-06 6.6E-11 82.0 6.4 83 251-333 96-180 (231)
135 KOG0116 RasGAP SH3 binding pro 98.2 4.1E-06 8.8E-11 87.2 7.7 78 354-432 289-368 (419)
136 KOG1548 Transcription elongati 98.2 4.8E-06 1E-10 83.1 7.4 77 353-430 134-220 (382)
137 KOG4660 Protein Mei2, essentia 98.1 2.5E-06 5.4E-11 89.6 4.6 76 345-424 67-143 (549)
138 KOG0151 Predicted splicing reg 98.1 9.2E-06 2E-10 87.3 8.5 82 350-432 171-258 (877)
139 KOG1457 RNA binding protein (c 98.1 1.4E-05 3.1E-10 75.6 8.6 80 352-432 33-119 (284)
140 KOG2193 IGF-II mRNA-binding pr 98.1 4.8E-07 1E-11 91.9 -1.3 147 258-428 3-154 (584)
141 PF04059 RRM_2: RNA recognitio 98.1 2.2E-05 4.7E-10 65.9 8.6 75 256-330 1-84 (97)
142 PF04059 RRM_2: RNA recognitio 98.0 3.3E-05 7.1E-10 64.9 8.7 76 354-429 2-85 (97)
143 KOG0226 RNA-binding proteins [ 98.0 6.9E-06 1.5E-10 79.0 4.3 81 251-331 185-268 (290)
144 KOG4454 RNA binding protein (R 97.9 4.8E-06 1E-10 78.5 2.7 73 354-428 10-84 (267)
145 KOG0106 Alternative splicing f 97.9 1.2E-05 2.7E-10 76.5 5.0 70 354-430 2-72 (216)
146 PF11608 Limkain-b1: Limkain b 97.8 7E-05 1.5E-09 60.8 7.5 67 354-429 3-75 (90)
147 KOG0128 RNA-binding protein SA 97.8 2.4E-06 5.2E-11 93.4 -1.9 160 255-419 570-735 (881)
148 PF11608 Limkain-b1: Limkain b 97.5 0.00043 9.3E-09 56.4 7.9 67 257-331 3-75 (90)
149 PF08777 RRM_3: RNA binding mo 97.5 0.00033 7.2E-09 59.7 7.0 68 354-426 2-75 (105)
150 PF08777 RRM_3: RNA binding mo 97.4 0.00079 1.7E-08 57.4 8.1 68 257-328 2-75 (105)
151 KOG4307 RNA binding protein RB 97.4 0.0022 4.8E-08 69.3 13.1 73 256-328 867-942 (944)
152 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00094 2E-08 49.8 5.9 52 257-313 2-53 (53)
153 KOG1995 Conserved Zn-finger pr 97.0 0.0026 5.7E-08 64.2 8.6 79 253-331 63-152 (351)
154 KOG1995 Conserved Zn-finger pr 96.9 0.00082 1.8E-08 67.8 4.1 77 354-431 67-154 (351)
155 KOG0115 RNA-binding protein p5 96.9 0.0018 3.9E-08 62.7 5.8 101 307-429 5-112 (275)
156 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0023 5E-08 47.7 5.1 52 354-411 2-53 (53)
157 COG5175 MOT2 Transcriptional r 96.8 0.0025 5.5E-08 63.8 6.4 76 354-430 115-202 (480)
158 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.007 1.5E-07 51.2 8.1 75 255-330 5-89 (100)
159 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.007 1.5E-07 51.2 8.0 75 354-430 7-91 (100)
160 KOG1855 Predicted RNA-binding 96.6 0.0043 9.3E-08 64.0 6.4 64 350-414 228-307 (484)
161 COG5175 MOT2 Transcriptional r 96.6 0.0047 1E-07 61.9 6.4 76 256-331 114-201 (480)
162 KOG4210 Nuclear localization s 96.4 0.0027 5.8E-08 63.5 3.8 77 255-331 183-262 (285)
163 KOG1996 mRNA splicing factor [ 96.3 0.011 2.3E-07 58.4 7.1 75 354-429 282-365 (378)
164 KOG2314 Translation initiation 96.3 0.0092 2E-07 63.4 7.0 77 253-329 55-140 (698)
165 KOG2314 Translation initiation 96.3 0.0065 1.4E-07 64.5 5.7 74 353-427 58-140 (698)
166 KOG1855 Predicted RNA-binding 96.2 0.0053 1.1E-07 63.3 4.7 67 249-315 224-305 (484)
167 KOG2202 U2 snRNP splicing fact 96.1 0.0024 5.2E-08 61.9 1.6 61 368-428 83-145 (260)
168 KOG2202 U2 snRNP splicing fact 96.1 0.0016 3.5E-08 63.1 0.3 60 271-330 83-145 (260)
169 KOG3152 TBP-binding protein, a 96.0 0.0039 8.5E-08 60.4 2.2 71 255-325 73-158 (278)
170 PF08952 DUF1866: Domain of un 95.9 0.023 5.1E-07 51.1 6.9 57 368-431 51-107 (146)
171 PF08952 DUF1866: Domain of un 95.6 0.028 6.2E-07 50.5 6.1 71 255-331 26-105 (146)
172 KOG0129 Predicted RNA-binding 95.6 0.035 7.7E-07 58.6 7.4 61 254-314 368-431 (520)
173 KOG4849 mRNA cleavage factor I 95.5 0.012 2.7E-07 59.2 3.6 75 256-330 80-159 (498)
174 KOG4676 Splicing factor, argin 95.5 0.022 4.7E-07 58.3 5.3 79 354-433 8-91 (479)
175 PF08675 RNA_bind: RNA binding 95.1 0.11 2.4E-06 42.4 7.2 55 253-314 6-60 (87)
176 KOG3152 TBP-binding protein, a 94.9 0.013 2.8E-07 56.9 1.9 70 352-422 73-157 (278)
177 KOG2416 Acinus (induces apopto 94.6 0.028 6E-07 60.2 3.4 76 350-429 441-520 (718)
178 KOG1996 mRNA splicing factor [ 94.2 0.1 2.3E-06 51.7 6.3 60 271-330 301-364 (378)
179 KOG4849 mRNA cleavage factor I 93.2 0.078 1.7E-06 53.6 3.5 73 353-426 80-157 (498)
180 PF07576 BRAP2: BRCA1-associat 92.7 0.86 1.9E-05 39.2 8.8 66 257-322 14-81 (110)
181 PF10309 DUF2414: Protein of u 92.5 0.6 1.3E-05 36.0 6.8 53 256-314 5-60 (62)
182 PF10309 DUF2414: Protein of u 92.5 0.59 1.3E-05 36.1 6.7 52 354-412 6-60 (62)
183 KOG0112 Large RNA-binding prot 92.4 0.19 4.2E-06 56.3 5.5 75 254-332 453-530 (975)
184 KOG2416 Acinus (induces apopto 92.3 0.11 2.3E-06 55.9 3.1 73 254-330 442-519 (718)
185 KOG2135 Proteins containing th 92.2 0.087 1.9E-06 55.2 2.3 74 255-332 371-445 (526)
186 PF07292 NID: Nmi/IFP 35 domai 92.0 0.16 3.4E-06 42.0 3.2 72 299-375 1-74 (88)
187 PF07576 BRAP2: BRCA1-associat 91.8 1 2.3E-05 38.7 8.2 67 354-420 14-81 (110)
188 KOG4285 Mitotic phosphoprotein 91.5 0.58 1.3E-05 46.7 7.1 69 256-329 197-266 (350)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 91.5 0.28 6.1E-06 45.6 4.7 68 255-322 6-82 (176)
190 KOG2193 IGF-II mRNA-binding pr 91.3 0.2 4.3E-06 52.0 3.7 71 354-430 2-75 (584)
191 KOG2591 c-Mpl binding protein, 90.9 0.49 1.1E-05 50.7 6.2 70 255-329 174-248 (684)
192 PF08675 RNA_bind: RNA binding 90.7 0.95 2.1E-05 37.1 6.4 53 354-414 10-63 (87)
193 KOG0115 RNA-binding protein p5 90.4 0.33 7.1E-06 47.4 4.2 74 257-330 32-111 (275)
194 PF04847 Calcipressin: Calcipr 90.1 0.95 2.1E-05 42.5 6.9 61 366-431 8-71 (184)
195 KOG2591 c-Mpl binding protein, 90.0 0.77 1.7E-05 49.3 6.8 66 354-424 176-245 (684)
196 KOG2068 MOT2 transcription fac 89.9 0.15 3.3E-06 51.4 1.4 77 354-431 78-163 (327)
197 KOG4285 Mitotic phosphoprotein 89.8 1.1 2.4E-05 44.8 7.3 69 353-427 197-266 (350)
198 KOG0804 Cytoplasmic Zn-finger 89.6 1.5 3.2E-05 46.2 8.3 70 253-322 71-142 (493)
199 KOG2068 MOT2 transcription fac 88.5 0.24 5.2E-06 50.0 1.7 76 256-331 77-161 (327)
200 PF11767 SET_assoc: Histone ly 88.2 1.8 4E-05 33.8 6.1 54 267-327 11-65 (66)
201 PF14111 DUF4283: Domain of un 88.1 0.61 1.3E-05 41.4 4.0 120 268-399 29-150 (153)
202 KOG2135 Proteins containing th 87.8 0.44 9.4E-06 50.2 3.1 70 358-432 377-447 (526)
203 PF15023 DUF4523: Protein of u 87.7 1.6 3.4E-05 39.4 6.1 71 255-330 85-159 (166)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 87.4 0.95 2.1E-05 42.1 4.9 77 354-430 8-97 (176)
205 KOG0804 Cytoplasmic Zn-finger 87.1 1.3 2.9E-05 46.4 6.1 68 353-420 74-142 (493)
206 PF15023 DUF4523: Protein of u 86.9 1.7 3.6E-05 39.2 5.8 74 350-430 83-161 (166)
207 KOG4574 RNA-binding protein (c 86.8 0.52 1.1E-05 52.8 3.2 73 356-433 301-376 (1007)
208 KOG2253 U1 snRNP complex, subu 85.6 1.1 2.4E-05 49.0 4.8 144 255-412 39-194 (668)
209 PF04847 Calcipressin: Calcipr 83.5 2.9 6.2E-05 39.3 6.1 59 269-331 8-69 (184)
210 PF11767 SET_assoc: Histone ly 83.3 6.1 0.00013 30.9 6.8 55 364-426 11-66 (66)
211 PF03880 DbpA: DbpA RNA bindin 82.3 5.1 0.00011 31.6 6.3 58 364-428 12-74 (74)
212 KOG4574 RNA-binding protein (c 81.8 1.1 2.3E-05 50.4 2.8 71 258-332 300-373 (1007)
213 KOG2253 U1 snRNP complex, subu 79.8 1.5 3.3E-05 48.0 3.2 66 354-427 41-107 (668)
214 PF03880 DbpA: DbpA RNA bindin 74.8 11 0.00023 29.7 6.0 56 267-329 12-73 (74)
215 PRK14548 50S ribosomal protein 65.3 18 0.00039 29.7 5.5 57 355-412 22-79 (84)
216 TIGR03636 L23_arch archaeal ri 64.2 20 0.00044 28.8 5.5 57 355-412 15-72 (77)
217 KOG2318 Uncharacterized conser 53.5 43 0.00093 36.7 7.3 76 350-426 171-301 (650)
218 KOG4483 Uncharacterized conser 49.1 31 0.00067 36.1 5.2 68 252-324 387-455 (528)
219 PF03468 XS: XS domain; Inter 47.5 19 0.00041 31.2 3.0 59 258-317 10-78 (116)
220 PF10567 Nab6_mRNP_bdg: RNA-re 47.1 24 0.00052 35.5 4.0 173 254-428 13-229 (309)
221 PF07145 PAM2: Ataxin-2 C-term 46.1 8.7 0.00019 22.4 0.5 16 172-187 2-17 (18)
222 PF03468 XS: XS domain; Inter 46.1 23 0.0005 30.7 3.4 56 355-412 10-75 (116)
223 KOG4483 Uncharacterized conser 40.8 47 0.001 34.8 5.1 65 352-422 390-455 (528)
224 PF10567 Nab6_mRNP_bdg: RNA-re 40.6 60 0.0013 32.7 5.6 76 352-428 14-105 (309)
225 KOG2318 Uncharacterized conser 38.2 1.1E+02 0.0024 33.6 7.5 77 253-329 171-304 (650)
226 KOG2940 Predicted methyltransf 37.8 19 0.00042 35.2 1.7 41 73-116 16-62 (325)
227 PTZ00191 60S ribosomal protein 35.9 87 0.0019 28.3 5.4 57 355-412 83-140 (145)
228 COG5594 Uncharacterized integr 33.6 9 0.00019 43.4 -1.4 177 255-432 207-397 (827)
229 PRK05738 rplW 50S ribosomal pr 32.1 67 0.0014 26.6 3.8 37 355-391 21-58 (92)
230 KOG4410 5-formyltetrahydrofola 29.9 1.1E+02 0.0023 30.9 5.3 45 354-403 331-376 (396)
231 KOG4410 5-formyltetrahydrofola 29.2 1.3E+02 0.0029 30.2 5.9 50 255-308 329-379 (396)
232 CHL00030 rpl23 ribosomal prote 28.3 80 0.0017 26.4 3.7 37 355-391 20-57 (93)
233 KOG4365 Uncharacterized conser 25.3 13 0.00028 39.3 -1.9 82 353-436 3-87 (572)
234 PF01402 RHH_1: Ribbon-helix-h 23.5 23 0.00051 23.8 -0.3 21 104-124 9-29 (39)
235 PF08299 Bac_DnaA_C: Bacterial 22.8 27 0.00058 27.3 -0.1 25 105-129 2-26 (70)
236 PF07292 NID: Nmi/IFP 35 domai 22.4 48 0.001 27.4 1.3 25 254-278 50-74 (88)
237 COG0089 RplW Ribosomal protein 21.8 1.6E+02 0.0034 24.7 4.3 38 355-392 22-60 (94)
238 KOG4019 Calcineurin-mediated s 20.8 74 0.0016 29.9 2.3 73 354-431 11-90 (193)
239 PF00276 Ribosomal_L23: Riboso 20.8 1.1E+02 0.0023 25.3 3.0 50 355-404 21-83 (91)
240 PF07530 PRE_C2HC: Associated 20.6 2.1E+02 0.0046 22.3 4.6 61 368-431 2-65 (68)
241 PF02714 DUF221: Domain of unk 20.2 1.7E+02 0.0036 29.3 5.0 30 299-330 1-31 (325)
No 1
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=325.68 Aligned_cols=322 Identities=20% Similarity=0.247 Sum_probs=242.9
Q ss_pred chhHHHHhhhhhcCCCccCccCCCCCCcccccc-CCCcccCCChHHhhhcCC---------CCCCC-----CcchhhHHH
Q 013503 104 ETMAVVESASQDSAVSSAGSIPASNGQDHPKQN-GGTMVMPLDQGLYNQNNQ---------RSNGG-----GDFKRDMRE 168 (442)
Q Consensus 104 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------r~~~~-----~~~~~~~~~ 168 (442)
..|||+.++|.++||.|+.|+|++...+||++| +|||+++|++.||+++|. |++.. +|+++..++
T Consensus 322 ~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~e 401 (725)
T KOG0110|consen 322 GANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEE 401 (725)
T ss_pred cccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHH
Confidence 479999999999999999999999888899999 999999999999999993 77776 999999999
Q ss_pred HHHHHhccCCcceeccCCCcCCCCCC-----CC--CCCCCCCCCC--------CCCCcccCCCCCCCCCCC--Cc---cc
Q 013503 169 LQELFSKLNPMAEEFVPPSLAKTNNN-----NH--GVNGFNGGFF--------ANNSLIFNNHNARNGNVN--AN---AA 228 (442)
Q Consensus 169 L~elfs~~g~~a~~~vPp~~~~~~~~-----~~--~~~~~~gg~~--------g~~~~~~~~~~~~~g~~~--g~---~~ 228 (442)
|.++|..||++.+++|||.++++++. .+ ++..++|.++ +.|.+.++-.+....-.+ .. .+
T Consensus 402 lt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~ 481 (725)
T KOG0110|consen 402 LTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEEN 481 (725)
T ss_pred HHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccC
Confidence 99999999999999999999988765 11 5555555544 333333331111110000 00 00
Q ss_pred cccCCCCCCCCCC------CCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-----Cce
Q 013503 229 VRRKKSFGQGKRR------MNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLR 297 (442)
Q Consensus 229 ~r~~~~~~~g~~~------~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-----skG 297 (442)
.-.+..-.++.-. -..+...........++|||+||++++|.++|..+|...|.|.++.|...++. |+|
T Consensus 482 ~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmG 561 (725)
T KOG0110|consen 482 PSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMG 561 (725)
T ss_pred cceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccc
Confidence 0001011111000 00010111111112233999999999999999999999999999988765432 689
Q ss_pred EEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhh
Q 013503 298 FAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFES 376 (442)
Q Consensus 298 ~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~ 376 (442)
||||+|.+.++|+.|++ |+|+.|+|+.|.|..+.. .+... .. .........++|.|+|||+.++..+|+.+|..
T Consensus 562 fgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~--k~~~~-~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a 636 (725)
T KOG0110|consen 562 FGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN--KPAST-VG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTA 636 (725)
T ss_pred eeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC--ccccc-cc--cccccccccceeeeeccchHHHHHHHHHHHhc
Confidence 99999999999999999 999999999999999861 11110 01 11111223579999999999999999999998
Q ss_pred cCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 377 VCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 377 ~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
||.|.+|+|+... +.++|||||+|.++.+|.+|++ |.+++|.||+|.++||+..
T Consensus 637 -FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 637 -FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred -ccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 9999999999874 4679999999999999999999 9999999999999999765
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=3e-29 Score=254.75 Aligned_cols=169 Identities=22% Similarity=0.383 Sum_probs=149.5
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
......++|||+|||+++|+++|+++|+.||+|.+|+|+.|..+ ++|||||+|.++++|++|++ |++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 44557899999999999999999999999999999999998754 68999999999999999998 9999999999999
Q ss_pred eccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHH
Q 013503 328 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAE 405 (442)
Q Consensus 328 ~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e 405 (442)
.+++.... ....++|||.|||..+|+++|+++|++ ||+|..++|+++. ++++|||||+|.+.+
T Consensus 182 ~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 182 SYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred eccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 98742110 112368999999999999999999998 9999999999885 688999999999999
Q ss_pred HHHHHHH-hCCceeCC--eeEEEeecCCCCCC
Q 013503 406 SAIAALN-CSGVVLGS--LPIRVSPSKTPVRP 434 (442)
Q Consensus 406 ~A~~Al~-LnG~~l~G--r~L~V~~Ak~~~~p 434 (442)
+|++|++ ||+..+.+ ++|+|.+++.....
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 9999999 99998866 79999999765443
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.2e-29 Score=256.99 Aligned_cols=252 Identities=19% Similarity=0.276 Sum_probs=177.8
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQG 238 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~g 238 (442)
.|+..+.++|.++|+++|++.++.+..+......-+++|-.+ ... .... ..-...++. -.|
T Consensus 11 Lp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f-----------~~~---~~A~----~Ai~~l~g~~l~g 72 (352)
T TIGR01661 11 LPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNY-----------VRP---EDAE----KAVNSLNGLRLQN 72 (352)
T ss_pred CCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEE-----------CcH---HHHH----HHHhhcccEEECC
Confidence 789999999999999999999998877765432112222211 110 0000 000000111 111
Q ss_pred CCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-h
Q 013503 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-L 315 (442)
Q Consensus 239 ~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-L 315 (442)
+.. .-............++|||+|||..+++++|+++|++||.|..++++.+.. .++|||||+|.+.++|+.|++ |
T Consensus 73 ~~i-~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 73 KTI-KVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred eeE-EEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 110 000001111223467899999999999999999999999999999988763 368999999999999999998 9
Q ss_pred cCcccCC--ccEEEeccCCCCCCCC------------CCC----------------------------------------
Q 013503 316 AGTMLGF--YPVRVLPSKTAIAPVN------------PTF---------------------------------------- 341 (442)
Q Consensus 316 ng~~l~G--r~L~V~~s~~~~~~~~------------p~~---------------------------------------- 341 (442)
+|..+.| .+|.|.++........ +..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9999887 5778877542210000 000
Q ss_pred -------------CCCCchh-------------hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCc
Q 013503 342 -------------LPRTEDE-------------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHS 393 (442)
Q Consensus 342 -------------~p~~~~~-------------~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~ 393 (442)
.+..... ......+|||+|||+.+++++|+++|++ ||.|.+++|++|. +.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~-fG~v~~v~i~~d~~t~~s 310 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGP-FGAVQNVKIIRDLTTNQC 310 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeEcCCCCCc
Confidence 0000000 0111236999999999999999999998 9999999999986 789
Q ss_pred ceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 394 TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 394 rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
+|||||+|.+.++|.+|++ |||..|+|+.|+|.|+...
T Consensus 311 kG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 311 KGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred cceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 9999999999999999999 9999999999999998654
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=1.7e-27 Score=254.84 Aligned_cols=178 Identities=25% Similarity=0.363 Sum_probs=150.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|.+||+|.+|+++.|+.+ ++|||||+|.+.++|++|++ |||..+.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999988654 69999999999999999998 9999999999999864
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~ 408 (442)
...... .+ .... ........++|||+|||+++++++|+++|++ ||.|.+++|.++. +.++|||||+|.+.++|.
T Consensus 185 ~~~p~a-~~-~~~~-~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQA-QP-IIDM-VQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccc-cc-cccc-ccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 321110 00 0000 0011123478999999999999999999998 9999999999986 578999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCCCC
Q 013503 409 AALN-CSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
+|++ |||..++|+.|+|.++.+++.+.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999 99999999999999998765553
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.4e-26 Score=242.91 Aligned_cols=176 Identities=28% Similarity=0.361 Sum_probs=149.2
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||..+|+++|+++|+.||.|.+|+++.|+.+ ++|||||+|.+.++|.+||.|+|..+.|++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 446789999999999999999999999999999999998654 689999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~ 408 (442)
.............. .......++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.
T Consensus 166 ~~~~~~~~~~~~~~--~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 166 QAEKNRAAKAATHQ--PGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred chhhhhhhhccccc--CCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 43221111000000 000112579999999999999999999998 9999999999886 588999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCC
Q 013503 409 AALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
+|++ |||..+.|++|+|.++...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 9998 9999999999999998643
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1e-26 Score=235.52 Aligned_cols=163 Identities=23% Similarity=0.438 Sum_probs=145.5
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...+|||+|||+++|+++|+++|+.||+|.+|+++.|+.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4688999999999999999999999999999999998754 68999999999999999998 99999999999999874
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~ 409 (442)
.... .....+|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 2110 112368999999999999999999998 9999999999875 6789999999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeecCCCC
Q 013503 410 ALN-CSGVVLGS--LPIRVSPSKTPV 432 (442)
Q Consensus 410 Al~-LnG~~l~G--r~L~V~~Ak~~~ 432 (442)
|++ |||..+.| .+|.|.++..+.
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 998 99999887 679999987654
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.1e-26 Score=250.28 Aligned_cols=243 Identities=22% Similarity=0.299 Sum_probs=182.5
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CC
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~ 237 (442)
..|+..+.++|.++|+++|++.++.++.+..+... .| |++. .|.+.. ... ..-...+.. -.
T Consensus 7 nLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s-----~G-----~afV-~F~~~~---~A~----~Al~~ln~~~i~ 68 (562)
T TIGR01628 7 DLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRS-----LG-----YGYV-NFQNPA---DAE----RALETMNFKRLG 68 (562)
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCc-----ce-----EEEE-EECCHH---HHH----HHHHHhCCCEEC
Confidence 36778899999999999999999999998865431 11 1111 111100 000 000000011 11
Q ss_pred CCCCCCCccchhhhh----ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHH
Q 013503 238 GKRRMNSRTSLAQRE----EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAA 312 (442)
Q Consensus 238 g~~~~~~r~~~~~~~----~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kA 312 (442)
|+. .++.++.++ .....+|||+|||.++|+++|+++|+.||.|.+|++..+..+ ++|||||+|.+.++|++|
T Consensus 69 gk~---i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 69 GKP---IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred Cee---EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHH
Confidence 222 122222221 223567999999999999999999999999999999988654 799999999999999999
Q ss_pred HH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-
Q 013503 313 LN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY- 390 (442)
Q Consensus 313 l~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~- 390 (442)
++ ++|..+.|+.|.|.......... .......++|||+|||.++|+++|+++|++ ||.|.++.+..+.
T Consensus 146 i~~lng~~~~~~~i~v~~~~~~~~~~---------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~-fG~i~~~~i~~~~~ 215 (562)
T TIGR01628 146 IQKVNGMLLNDKEVYVGRFIKKHERE---------AAPLKKFTNLYVKNLDPSVNEDKLRELFAK-FGEITSAAVMKDGS 215 (562)
T ss_pred HHHhcccEecCceEEEeccccccccc---------cccccCCCeEEEeCCCCcCCHHHHHHHHHh-cCCEEEEEEEECCC
Confidence 98 99999999999997653221110 111233478999999999999999999998 9999999999886
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeC----CeeEEEeecCCCC
Q 013503 391 HHSTRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRVSPSKTPV 432 (442)
Q Consensus 391 g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~----Gr~L~V~~Ak~~~ 432 (442)
++++|||||+|.+.++|.+|++ |+|..+. |+.|.|.+++...
T Consensus 216 g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 216 GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 6889999999999999999999 9999999 9999999986653
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=6.7e-26 Score=244.19 Aligned_cols=161 Identities=29% Similarity=0.440 Sum_probs=144.5
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCC
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI 334 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~ 334 (442)
+|||+|||+++||++|+++|++||.|.+|++++|..+ ++|||||+|.+.++|++|++ +++..+.|++|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 7999999999999999999999999999999998764 68999999999999999998 99999999999999974221
Q ss_pred CCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-
Q 013503 335 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN- 412 (442)
Q Consensus 335 ~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~- 412 (442)
..+.....+|||+|||.++++++|+++|++ ||.|.+|++..+. ++++|||||+|.+.++|.+|++
T Consensus 82 ------------~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ 148 (562)
T TIGR01628 82 ------------SLRRSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQK 148 (562)
T ss_pred ------------cccccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHH
Confidence 111223468999999999999999999998 9999999999886 6899999999999999999998
Q ss_pred hCCceeCCeeEEEeecCCC
Q 013503 413 CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 413 LnG~~l~Gr~L~V~~Ak~~ 431 (442)
+||..+.|+.|.|......
T Consensus 149 lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 149 VNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred hcccEecCceEEEeccccc
Confidence 9999999999999876543
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=7.5e-26 Score=215.33 Aligned_cols=173 Identities=25% Similarity=0.370 Sum_probs=149.5
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
---|||+.|...++.|+|++.|.+||+|.++++++|.++ ++|||||.|.+.++|+.||. |||.-|++|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 445999999999999999999999999999999999876 79999999999999999999 999999999999999864
Q ss_pred CCCCCCCCCCCCCchh----hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHH
Q 013503 333 AIAPVNPTFLPRTEDE----REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~----~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~ 408 (442)
.....+. .+..-++ .....++|||+|++..+|+++|++.|++ ||.|..|++.++.| ||||.|+++|+|.
T Consensus 142 Kp~e~n~--~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~qG----YaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNG--KPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKDQG----YAFVRFETKEAAA 214 (321)
T ss_pred CccccCC--CCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEecccc----eEEEEecchhhHH
Confidence 4322221 1111111 1334579999999999999999999998 99999999997765 9999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCCCC
Q 013503 409 AALN-CSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
+|+. +||.+++|..+++.|.+......
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCCCCC
Confidence 9998 99999999999999998875543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.3e-25 Score=236.16 Aligned_cols=174 Identities=25% Similarity=0.301 Sum_probs=143.9
Q ss_pred cCCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+ .+|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|..|+. |||..|.|++|.|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3568999999998 69999999999999999999999875 4899999999999999998 99999999999999875
Q ss_pred CCCCCCCCC------------CCC----C--Cch-----hhhcccceeeeeCCCCCCCHHHHHHHhhhcCCc--eEEEEE
Q 013503 332 TAIAPVNPT------------FLP----R--TED-----EREMCARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRL 386 (442)
Q Consensus 332 ~~~~~~~p~------------~~p----~--~~~-----~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~--I~~v~I 386 (442)
......... +.. + ... ....++.+|||+|||.++|+++|+++|++ ||. |..+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik~ 428 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFKF 428 (481)
T ss_pred cccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEEE
Confidence 432111000 000 0 000 00124579999999999999999999998 997 889988
Q ss_pred eccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee------EEEeecCCC
Q 013503 387 LGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP------IRVSPSKTP 431 (442)
Q Consensus 387 ~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~------L~V~~Ak~~ 431 (442)
....+..+++|||+|.+.++|.+|+. |||..|.|+. |+|++|++.
T Consensus 429 ~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76655568899999999999999999 9999999985 999999865
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=6.9e-24 Score=225.35 Aligned_cols=175 Identities=22% Similarity=0.260 Sum_probs=140.4
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcC------------CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcc
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGC------------GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTM 319 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~------------G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~ 319 (442)
.....++|||+|||+.+|+++|+++|..+ +.|..+.+..+ +|||||+|.+.++|..||+|+|..
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~----kg~afVeF~~~e~A~~Al~l~g~~ 246 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE----KNFAFLEFRTVEEATFAMALDSII 246 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC----CCEEEEEeCCHHHHhhhhcCCCeE
Confidence 34467899999999999999999999974 34555555433 479999999999999999999999
Q ss_pred cCCccEEEeccCCCCCCCCCC--C---CC----------CCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEE
Q 013503 320 LGFYPVRVLPSKTAIAPVNPT--F---LP----------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL 384 (442)
Q Consensus 320 l~Gr~L~V~~s~~~~~~~~p~--~---~p----------~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v 384 (442)
|.|++|.|............. . .+ ..........++|||+|||..+|+++|+++|++ ||.|..+
T Consensus 247 ~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~~ 325 (509)
T TIGR01642 247 YSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKAF 325 (509)
T ss_pred eeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEE
Confidence 999999998654322110000 0 00 000011223579999999999999999999998 9999999
Q ss_pred EEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 385 RLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 385 ~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.|+++. |.++|||||+|.+.++|..|++ |||..++|+.|+|.++...
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 999875 6899999999999999999998 9999999999999998644
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.4e-24 Score=217.43 Aligned_cols=169 Identities=24% Similarity=0.332 Sum_probs=145.1
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcc-cCC--ccE
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTM-LGF--YPV 325 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~-l~G--r~L 325 (442)
.+.+.-.+||+-||..++|+||+++|++||.|.+|.+++|+.+ ++|||||.|.+.++|.+|+. |++.. |-| .+|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3456677999999999999999999999999999999999876 69999999999999999998 76654 554 688
Q ss_pred EEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCH
Q 013503 326 RVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMA 404 (442)
Q Consensus 326 ~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~ 404 (442)
.|++++.+.. +-...++|||+-|+..+||.||+++|++ ||.|++|.|++|. +.+||+|||.|.+.
T Consensus 110 qvk~Ad~E~e-------------r~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 110 QVKYADGERE-------------RIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPDGLSRGCAFVKFSTK 175 (510)
T ss_pred eecccchhhh-------------ccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheecccccccceeEEEEehH
Confidence 9998743221 1112378999999999999999999998 9999999999987 79999999999999
Q ss_pred HHHHHHHH-hCC-ceeCCe--eEEEeecCCCCCC
Q 013503 405 ESAIAALN-CSG-VVLGSL--PIRVSPSKTPVRP 434 (442)
Q Consensus 405 e~A~~Al~-LnG-~~l~Gr--~L~V~~Ak~~~~p 434 (442)
+.|..|++ ||| ..+.|+ +|.|.||.+...+
T Consensus 176 e~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred HHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 99999999 999 456664 9999999876443
No 13
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=1.4e-23 Score=222.47 Aligned_cols=167 Identities=21% Similarity=0.201 Sum_probs=138.0
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-h--cCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L--AGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-L--ng~~l~Gr~L~V~~s~~ 332 (442)
+++|||+|||+++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|++|++ + ++..+.|++|.|.++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999864 3799999999999999998 4 78899999999999853
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
........ ............+|+|.||++.+|+++|+++|++ ||.|.+|.|.++.+ +++|||+|.+.++|.+|++
T Consensus 78 ~~~~~~~~--~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 78 QEIKRDGN--SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN--VFQALVEFESVNSAQHAKA 152 (481)
T ss_pred cccccCCC--CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC--ceEEEEEECCHHHHHHHHH
Confidence 32111100 0000001123357999999999999999999998 99999999987654 4799999999999999999
Q ss_pred -hCCceeCC--eeEEEeecCCC
Q 013503 413 -CSGVVLGS--LPIRVSPSKTP 431 (442)
Q Consensus 413 -LnG~~l~G--r~L~V~~Ak~~ 431 (442)
|||..+.| +.|+|.|+++.
T Consensus 153 ~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 153 ALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HhcCCcccCCceEEEEEEecCC
Confidence 99999964 58999998763
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=3.9e-23 Score=219.58 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=141.1
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||..+|+++|+++|+.||.|..+.++.+..+ ++|||||+|.+.++|..|++ |+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35688999999999999999999999999999999988643 68999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCC---------CCCCc-----hhhhcccceeeeeCCCCC----------CCHHHHHHHhhhcCCceEEEEE
Q 013503 331 KTAIAPVNPTF---------LPRTE-----DEREMCARTIYCTNIDKK----------VTQADVKLFFESVCGEVYRLRL 386 (442)
Q Consensus 331 ~~~~~~~~p~~---------~p~~~-----~~~~~~~~tL~V~NLp~~----------vTeedL~~~F~~~fG~I~~v~I 386 (442)
........... .+... .....++.+|+|.|+... ...++|+++|++ ||.|..|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEe
Confidence 43221111000 00000 001224678999999642 123689999998 999999999
Q ss_pred eccC-----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 387 LGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 387 ~~d~-----g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
+++. +...|+|||+|.+.++|.+|+. |||..|+|+.|.|.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 8752 2457899999999999999999 999999999999999653
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=1.3e-23 Score=224.44 Aligned_cols=233 Identities=21% Similarity=0.237 Sum_probs=165.6
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC--CC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF--GQ 237 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~--~~ 237 (442)
+|+..+.++|.++|+++|++..+.++.+.+ ... .+++.-.| .+. .... ..-...+++ ..
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~~vrl~~D~s-G~s-----RGfaFV~F------~~~---e~A~----~Ai~~lng~~i~~ 126 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIYELRLMMDFS-GQN-----RGYAFVTF------CGK---EEAK----EAVKLLNNYEIRP 126 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEEECCC-CCc-----cceEEEEe------CCH---HHHH----HHHHHcCCCeecC
Confidence 788889999999999999999988877733 221 12211111 110 0000 000011111 11
Q ss_pred CCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCC-eeEEEEecC---CCCCceEEEEEeCCHHHHHHHH
Q 013503 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGD---PNSVLRFAFIEFTDEEGARAAL 313 (442)
Q Consensus 238 g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~-I~~V~i~~d---~~~skG~AFVeF~s~e~A~kAl 313 (442)
|+. +.. . .....++|||+|||.++|+++|.+.|++++. +.++.+... ...++|||||+|.+.++|..|+
T Consensus 127 Gr~-l~V--~----~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Ai 199 (578)
T TIGR01648 127 GRL-LGV--C----ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMAR 199 (578)
T ss_pred Ccc-ccc--c----ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHH
Confidence 111 100 1 1124688999999999999999999999863 444544432 2346899999999999999999
Q ss_pred H-hcC--cccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcC--CceEEEEEec
Q 013503 314 N-LAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLG 388 (442)
Q Consensus 314 ~-Lng--~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~f--G~I~~v~I~~ 388 (442)
+ |+. ..+.|+.|.|.++....... .......++|||+||+.++|+++|+++|++ | |+|.+|.++
T Consensus 200 rkL~~gki~l~Gr~I~VdwA~p~~~~d---------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~- 268 (578)
T TIGR01648 200 RKLMPGRIQLWGHVIAVDWAEPEEEVD---------EDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKI- 268 (578)
T ss_pred HHhhccceEecCceEEEEeeccccccc---------ccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEee-
Confidence 7 643 45789999999975322111 011123478999999999999999999998 9 999999876
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCC
Q 013503 389 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 434 (442)
Q Consensus 389 d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~p 434 (442)
++||||+|.+.++|.+|++ |||..|.|+.|+|.|++++...
T Consensus 269 -----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 269 -----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred -----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 4599999999999999998 9999999999999999886543
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.8e-24 Score=213.40 Aligned_cols=178 Identities=28% Similarity=0.402 Sum_probs=146.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccC-CccEEEec
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLP 329 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr~L~V~~ 329 (442)
...+.|||+.||.++.|++|..+|++.|+|-++++++|+-+ ++|||||.|.+.++|+.|++ ||+..|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 46788999999999999999999999999999999999643 69999999999999999999 9999885 88888866
Q ss_pred cCCCC------CC--------------------------------CCCCC------------------------------
Q 013503 330 SKTAI------AP--------------------------------VNPTF------------------------------ 341 (442)
Q Consensus 330 s~~~~------~~--------------------------------~~p~~------------------------------ 341 (442)
|..+. .| .+..|
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 53210 00 00000
Q ss_pred -----CCCC-ch-hhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h
Q 013503 342 -----LPRT-ED-EREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C 413 (442)
Q Consensus 342 -----~p~~-~~-~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-L 413 (442)
.|.. .+ +.....+.|||+||+.++|+|.|+++|++ ||.|.+|+.++| ||||.|.+.++|.+||+ +
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD------YaFVHf~eR~davkAm~~~ 313 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD------YAFVHFAEREDAVKAMKET 313 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc------eeEEeecchHHHHHHHHHh
Confidence 0000 00 01223468999999999999999999998 999999998865 99999999999999999 9
Q ss_pred CCceeCCeeEEEeecCCCCCCCCCC
Q 013503 414 SGVVLGSLPIRVSPSKTPVRPRAPR 438 (442)
Q Consensus 414 nG~~l~Gr~L~V~~Ak~~~~pr~pR 438 (442)
||..|.|..|.|..|||....+..|
T Consensus 314 ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 314 NGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred cCceecCceEEEEecCChhhhccch
Confidence 9999999999999999987665555
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.9e-24 Score=216.52 Aligned_cols=233 Identities=21% Similarity=0.327 Sum_probs=189.6
Q ss_pred chhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC--CCCC
Q 013503 162 FKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF--GQGK 239 (442)
Q Consensus 162 ~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~--~~g~ 239 (442)
...+...|.++|++.||+..+.+|.+. + . .|.+|..| ... ..+ ......-+| ..|+
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-s------lgy~yvnf------~~~---~da-----~~A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-S------LGYAYVNF------QQP---ADA-----ERALDTMNFDVLKGK 65 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C-c------cceEEEec------CCH---HHH-----HHHHHHcCCcccCCc
Confidence 345889999999999999999999999 4 3 23333222 221 000 001122333 4455
Q ss_pred CCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCc
Q 013503 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGT 318 (442)
Q Consensus 240 ~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~ 318 (442)
+ .|++|+++++.. |||.||++++|...|.++|+.||.|.+|++..+.++++|| ||+|+++++|++|++ +||.
T Consensus 66 ~---~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ 138 (369)
T KOG0123|consen 66 P---IRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGM 138 (369)
T ss_pred E---EEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCc
Confidence 5 788999887665 9999999999999999999999999999999999999999 999999999999999 9999
Q ss_pred ccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEE
Q 013503 319 MLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIA 397 (442)
Q Consensus 319 ~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~A 397 (442)
.+.|++|.|...........+... .......+++.|++.+++++.|..+|.. +|.|.++.++.+. ++++||+
T Consensus 139 ll~~kki~vg~~~~~~er~~~~~~------~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~~g~~~~~g 211 (369)
T KOG0123|consen 139 LLNGKKIYVGLFERKEEREAPLGE------YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDSIGKSKGFG 211 (369)
T ss_pred ccCCCeeEEeeccchhhhcccccc------hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecCCCCCCCcc
Confidence 999999999886433222221111 2223468999999999999999999998 9999999999986 6789999
Q ss_pred EEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 398 FVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 398 FVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
||.|.+.++|..|++ |++..+.+..+.|..+..
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 999999999999999 999999999999999876
No 18
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=5.5e-24 Score=192.61 Aligned_cols=166 Identities=26% Similarity=0.343 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...||||+||+..++++.|.++|-+.|+|.++++.+|+-+ .+|||||+|.++|+|+.|++ ||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5789999999999999999999999999999999998854 58999999999999999999 99999999999999874
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCcceEEEEEeCCHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v-~I~~d~--g~~rG~AFVeF~s~e~A~ 408 (442)
... .......++||+||.+.+++..|.+.|+. ||.+.+. .|+++. +.++|+|||.|.+.+.+.
T Consensus 88 ~~~-------------~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AHQ-------------KNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred ccc-------------ccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 111 11123368999999999999999999997 9987764 677765 689999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCCC
Q 013503 409 AALN-CSGVVLGSLPIRVSPSKTPVRP 434 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~Ak~~~~p 434 (442)
+|+. +||..+++++|+|+++.....+
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecCCC
Confidence 9999 9999999999999998665443
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=8.8e-24 Score=200.18 Aligned_cols=166 Identities=22% Similarity=0.396 Sum_probs=148.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...+.|.|.-||..+|+++|+.+|...|+|++|++++|+-+ +.||+||.|-++++|++|+. |||..+..+.|+|.++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 35778999999999999999999999999999999999854 69999999999999999999 9999999999999997
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~ 408 (442)
++ ..... ....|||++||...|..||+++|++ ||.|..-+|+.|. |.++|.|||.|+..++|+
T Consensus 119 RP-----------Ss~~I---k~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 119 RP-----------SSDSI---KDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred cC-----------Chhhh---cccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 52 22222 2367999999999999999999999 9999999998886 789999999999999999
Q ss_pred HHHH-hCCceeCCe--eEEEeecCCCCCC
Q 013503 409 AALN-CSGVVLGSL--PIRVSPSKTPVRP 434 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr--~L~V~~Ak~~~~p 434 (442)
.|+. |||..-.|+ +|.|.||..|...
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 9999 999887775 8999999887544
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=6.3e-23 Score=215.37 Aligned_cols=248 Identities=21% Similarity=0.285 Sum_probs=170.5
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCC------------CCCCCCCCcccCCCCCCCCCCCCcc
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFN------------GGFFANNSLIFNNHNARNGNVNANA 227 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~------------gg~~g~~~~~~~~~~~~~g~~~g~~ 227 (442)
+|+..+.++|.++|+++|++..+.++.+......-+++|-.+. |..+.+. .+.- .
T Consensus 97 lp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~-~i~v------------~ 163 (457)
T TIGR01622 97 LALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGR-PIIV------------Q 163 (457)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCe-eeEE------------e
Confidence 8899999999999999999999999877544331122222111 0000000 0000 0
Q ss_pred ccccCCCCCCCCCCCCCc-cchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeC
Q 013503 228 AVRRKKSFGQGKRRMNSR-TSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFT 304 (442)
Q Consensus 228 ~~r~~~~~~~g~~~~~~r-~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~ 304 (442)
..+........ ...........++|||+|||..+|+++|+++|+.||.|..|.+..+..+ ++|||||+|.
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 164 -------SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred -------ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 00000000000 0000000113689999999999999999999999999999999988764 5899999999
Q ss_pred CHHHHHHHHH-hcCcccCCccEEEeccCCCCCCC------------------------------------------CCC-
Q 013503 305 DEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPV------------------------------------------NPT- 340 (442)
Q Consensus 305 s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~------------------------------------------~p~- 340 (442)
+.++|.+|++ |+|..+.|++|.|.++....... .+.
T Consensus 237 ~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTG 316 (457)
T ss_pred CHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCcc
Confidence 9999999998 99999999999999853210000 000
Q ss_pred -----------------CCC--------------CC-ch-hhhcccceeeeeCCCCCCC----------HHHHHHHhhhc
Q 013503 341 -----------------FLP--------------RT-ED-EREMCARTIYCTNIDKKVT----------QADVKLFFESV 377 (442)
Q Consensus 341 -----------------~~p--------------~~-~~-~~~~~~~tL~V~NLp~~vT----------eedL~~~F~~~ 377 (442)
..+ .. .. ......++|+|.||....+ .+||++.|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k- 395 (457)
T TIGR01622 317 SKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSK- 395 (457)
T ss_pred chhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHh-
Confidence 000 00 00 0123457889999955433 3689999998
Q ss_pred CCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 378 CGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 378 fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
||.|..|.|... ...|++||+|.+.++|.+|++ |||..|+|+.|.+.+...
T Consensus 396 ~G~v~~v~v~~~--~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 396 YGGVVHIYVDTK--NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred cCCeeEEEEeCC--CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999998643 456899999999999999999 999999999999998743
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=4.1e-22 Score=204.47 Aligned_cols=174 Identities=24% Similarity=0.334 Sum_probs=141.2
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCC-ceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV-LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~s-kG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
.-.|.|+|||+.+.+.+|+.+|+.||.|..|.|++.+.+. .|||||.|....+|..|++ +|+..|+||+|-|.|+-..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5679999999999999999999999999999999766543 5999999999999999999 9999999999999985320
Q ss_pred CCC------------------------C--CCCC-------CCCC-----------------c-----------------
Q 013503 334 IAP------------------------V--NPTF-------LPRT-----------------E----------------- 346 (442)
Q Consensus 334 ~~~------------------------~--~p~~-------~p~~-----------------~----------------- 346 (442)
..- . ...+ .... .
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 000 0 0000 0000 0
Q ss_pred ---------hhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-h-
Q 013503 347 ---------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C- 413 (442)
Q Consensus 347 ---------~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-L- 413 (442)
.+...-..+|||+|||+++|+++|.+.|++ ||+|.++.|+.++ ++++|.|||.|.+..+|.+||+ .
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000111369999999999999999999998 9999999999876 7999999999999999999998 3
Q ss_pred ----CC-ceeCCeeEEEeecCC
Q 013503 414 ----SG-VVLGSLPIRVSPSKT 430 (442)
Q Consensus 414 ----nG-~~l~Gr~L~V~~Ak~ 430 (442)
.| ..|.||.|+|..|-+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred ccCCCceEEEeccEEeeeeccc
Confidence 23 789999999998754
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=3.4e-22 Score=213.70 Aligned_cols=159 Identities=21% Similarity=0.235 Sum_probs=135.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hcCcccC-CccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr~L~V~~ 329 (442)
+...++|||+|||+++||++|+++|++||.|.+|+|+.|.. .++|||||+|.+.++|++||+ ||+..+. |+.|.|..
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 44678999999999999999999999999999999999853 379999999999999999999 9998885 77777765
Q ss_pred cCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEec---cCCCcceEEEEEeCCHH
Q 013503 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLG---DYHHSTRIAFVEFVMAE 405 (442)
Q Consensus 330 s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~---d~g~~rG~AFVeF~s~e 405 (442)
+. ..++|||+|||.++++++|.+.|++ ++ .+..+.+.. +.++++|||||+|.+++
T Consensus 135 S~--------------------~~~rLFVgNLP~~~TeeeL~eeFsk-v~egvv~vIv~~~~~~kgKnRGFAFVeF~s~e 193 (578)
T TIGR01648 135 SV--------------------DNCRLFVGGIPKNKKREEILEEFSK-VTEGVVDVIVYHSAADKKKNRGFAFVEYESHR 193 (578)
T ss_pred cc--------------------cCceeEeecCCcchhhHHHHHHhhc-ccCCceEEEEeccccccCccCceEEEEcCCHH
Confidence 42 1268999999999999999999998 65 455555443 23578999999999999
Q ss_pred HHHHHHH-hC-C-ceeCCeeEEEeecCCCC
Q 013503 406 SAIAALN-CS-G-VVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 406 ~A~~Al~-Ln-G-~~l~Gr~L~V~~Ak~~~ 432 (442)
+|.+|++ |+ + ..+.|+.|.|+|+.+..
T Consensus 194 dAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 194 AAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred HHHHHHHHhhccceEecCceEEEEeecccc
Confidence 9999997 64 3 57899999999997654
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3e-22 Score=189.80 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=181.1
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCC-----CCC--ccccccC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGN-----VNA--NAAVRRK 232 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~-----~~g--~~~~r~~ 232 (442)
.|..-|.+||..||+-.|++...-+-++...+. .++||.- ||... .++. -+| -+.+.-+
T Consensus 49 LPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-------SLGYGFV----NYv~p---~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 49 LPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-------SLGYGFV----NYVRP---KDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred cccccCHHHHHHHhhcccceeeeeeeecccccc-------cccccee----eecCh---HHHHHHHhhhcceeeccceEE
Confidence 677779999999999999999988888886654 3444332 22221 1110 000 0110111
Q ss_pred CCCCCCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHH
Q 013503 233 KSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGAR 310 (442)
Q Consensus 233 ~~~~~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~ 310 (442)
-+|. | ...+......|||.+||..+|..+|.++|++||.|..-+|..|..+ ++|.+||.|...++|+
T Consensus 115 VSyA--------R---PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 115 VSYA--------R---PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred EEec--------c---CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 1110 1 1122235678999999999999999999999999998888888765 6999999999999999
Q ss_pred HHHH-hcCcccCCc--cEEEeccCCCCCCC----------CC----------------------------CCCCCCchh-
Q 013503 311 AALN-LAGTMLGFY--PVRVLPSKTAIAPV----------NP----------------------------TFLPRTEDE- 348 (442)
Q Consensus 311 kAl~-Lng~~l~Gr--~L~V~~s~~~~~~~----------~p----------------------------~~~p~~~~~- 348 (442)
.|++ |||..-.|. +|.|+++....... .| .|.|...+.
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m 263 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGM 263 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcccccc
Confidence 9999 999987764 89998865321100 00 011111110
Q ss_pred ----------hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCC
Q 013503 349 ----------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSG 415 (442)
Q Consensus 349 ----------~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG 415 (442)
......+|||.||.++++|.-|+++|++ ||.|..|++++|. ++.+|||||.+.+.++|..|+. |||
T Consensus 264 ~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNG 342 (360)
T KOG0145|consen 264 SGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 342 (360)
T ss_pred ceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcC
Confidence 0223468999999999999999999999 9999999999997 5899999999999999999999 999
Q ss_pred ceeCCeeEEEeecCC
Q 013503 416 VVLGSLPIRVSPSKT 430 (442)
Q Consensus 416 ~~l~Gr~L~V~~Ak~ 430 (442)
..++++.|.|+|...
T Consensus 343 y~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 343 YRLGDRVLQVSFKTN 357 (360)
T ss_pred ccccceEEEEEEecC
Confidence 999999999999644
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=4.8e-22 Score=203.39 Aligned_cols=150 Identities=26% Similarity=0.424 Sum_probs=139.6
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~ 335 (442)
.+|||+ +++|+..|.++|+++|+|+++++++|. ++.|||||.|.++++|++||+ +|...+.|++|+|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC--
Confidence 468999 999999999999999999999999999 799999999999999999999 9999999999999998421
Q ss_pred CCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 013503 336 PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 414 (442)
Q Consensus 336 ~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln 414 (442)
+ ..|||+||++.++..+|.++|+. ||+|.+|++..+.+.++|| ||+|++.++|.+|++ +|
T Consensus 76 ----------~-------~~~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 76 ----------P-------SLVFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ----------C-------ceeeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 1 12999999999999999999998 9999999999998669999 999999999999999 99
Q ss_pred CceeCCeeEEEeecCCC
Q 013503 415 GVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 415 G~~l~Gr~L~V~~Ak~~ 431 (442)
|..+.|+.|.|......
T Consensus 137 g~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERK 153 (369)
T ss_pred CcccCCCeeEEeeccch
Confidence 99999999999987654
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=6.4e-22 Score=203.05 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=148.2
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..||||++||+.++.++|.++|+.+|+|..|.+..+++. ++|||||.|.-.|+++.|++ ..+..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 489999999999999999999999999999999998876 59999999999999999999 999999999999988754
Q ss_pred CCCCC-----CCC-----CCCCCchhh--hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEE
Q 013503 333 AIAPV-----NPT-----FLPRTEDER--EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFV 399 (442)
Q Consensus 333 ~~~~~-----~p~-----~~p~~~~~~--~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFV 399 (442)
...+. .+. +....+... ......|+|+|||+.+.+.||+.+|+. ||.|..|.|++.. ++..|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCccceEEE
Confidence 32221 000 001001111 122468999999999999999999998 9999999999876 677799999
Q ss_pred EeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 400 EFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 400 eF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.|....+|.+|++ +||..|.||+|-|.||-+.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999 9999999999999998654
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.8e-21 Score=191.64 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=150.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
.-+.|||+.|.+++.|+.|+..|.+||+|.+|.+.-|+.+ ++|||||+|+-+|.|+-|++ |||.+++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3567999999999999999999999999999999999865 69999999999999999999 99999999999998642
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~ 409 (442)
. .+...... ..-.+......+|||..+.++++++||+..|+. ||+|..|.+.++. +.++||+||||.+..+...
T Consensus 192 N--mpQAQpiI-D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 N--MPQAQPII-DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred C--CcccchHH-HHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 1 11110000 000112334679999999999999999999996 9999999999987 5799999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCCCCCC
Q 013503 410 ALN-CSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 410 Al~-LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
|+. ||-..++|+.|+|..+-+|+.+.
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPDAL 294 (544)
T ss_pred HhhhcchhhcccceEecccccCCCchh
Confidence 999 99999999999999998887654
No 27
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=5.7e-21 Score=183.69 Aligned_cols=149 Identities=25% Similarity=0.427 Sum_probs=136.1
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCC
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAP 336 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~ 336 (442)
.|||+|||..+++.+|+.+|++||.|.+|.|++ .||||..++...|+.|+. |+|..|+|..|.|+.++..
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 589999999999999999999999999999996 499999999999999999 9999999999999997522
Q ss_pred CCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC
Q 013503 337 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG 415 (442)
Q Consensus 337 ~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG 415 (442)
...+++|+|+||.+.++..+|+..|++ ||.|..+.|++ +|+||.|+..++|..|+. |+|
T Consensus 75 -------------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivk------dy~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 75 -------------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred -------------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeec------ceeEEEEeeccchHHHHhcccc
Confidence 123478999999999999999999999 99999999974 499999999999999998 999
Q ss_pred ceeCCeeEEEeecCCCCCCC
Q 013503 416 VVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 416 ~~l~Gr~L~V~~Ak~~~~pr 435 (442)
..+.|++++|..+....++.
T Consensus 135 ~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred cccccceeeeeeeccccccC
Confidence 99999999999987765543
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.83 E-value=3.1e-19 Score=191.52 Aligned_cols=158 Identities=16% Similarity=0.273 Sum_probs=106.9
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC--CCCC--cccc----c
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNG--NVNA--NAAV----R 230 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g--~~~g--~~~~----r 230 (442)
.+||..+.++|.++|++||++.++.++.+..+...-+++|-.+. ........ .-+| -.++ .
T Consensus 114 nLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~-----------s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 114 SISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYE-----------VPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeC-----------cHHHHHHHHHhcCCeEEecceeeec
Confidence 38999999999999999999999999887765542233332211 00000000 0000 0000 0
Q ss_pred cCCCCCCCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHH
Q 013503 231 RKKSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEG 308 (442)
Q Consensus 231 ~~~~~~~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~ 308 (442)
+..+..+.... ...........++|||+|||+++++++|+++|+.||.|.+|++..|+.+ ++|||||+|.+.++
T Consensus 183 rp~~~p~a~~~----~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 183 RPSNMPQAQPI----IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccccc----cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 00000000000 0000111224578999999999999999999999999999999998754 68999999999999
Q ss_pred HHHHHH-hcCcccCCccEEEeccC
Q 013503 309 ARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 309 A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
|.+|++ ||+..++|+.|+|.++.
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecC
Confidence 999999 99999999999997643
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.79 E-value=1.1e-19 Score=187.40 Aligned_cols=179 Identities=30% Similarity=0.386 Sum_probs=152.1
Q ss_pred hhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEE
Q 013503 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRV 327 (442)
Q Consensus 250 ~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V 327 (442)
..++.+.+|||+--|+..+++.+|.+||+.+|.|..|+++.|... ++|.|||+|.+.+....|+.|.|+.+.|.||.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 345568899999999999999999999999999999999999865 699999999999999999999999999999999
Q ss_pred eccCCCCCCC---CCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeC
Q 013503 328 LPSKTAIAPV---NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFV 402 (442)
Q Consensus 328 ~~s~~~~~~~---~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~ 402 (442)
+.+....... .+.+... .-..+...|||+||.+++++++|+.+|++ ||.|..|.+++|. |.++|||||+|.
T Consensus 253 q~sEaeknr~a~~s~a~~~k---~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGK---GFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cccHHHHHHHHhcccccccc---ccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEEe
Confidence 9975443221 1111100 00112234999999999999999999999 9999999999994 899999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 013503 403 MAESAIAALN-CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 403 s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+.++|.+|++ |||..|.|+.|+|..-....
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 9999999998 99999999999998765443
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.8e-18 Score=165.20 Aligned_cols=138 Identities=23% Similarity=0.311 Sum_probs=116.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
+...|||||+||+.++||+-|..||.+.|.|.+|+++.| .|.|.++..
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~~ 50 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWATA 50 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccccC
Confidence 346899999999999999999999999999999999976 345555432
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~A 410 (442)
...... +.. ...-.+||..|...++.++|++.|.+ ||+|.+++|++|. ++++|||||.|.+.++|++|
T Consensus 51 p~nQsk-------~t~--~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnA 120 (321)
T KOG0148|consen 51 PGNQSK-------PTS--NQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENA 120 (321)
T ss_pred cccCCC-------Ccc--ccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHHH
Confidence 211111 111 11357999999999999999999999 9999999999997 69999999999999999999
Q ss_pred HH-hCCceeCCeeEEEeecCCCC
Q 013503 411 LN-CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 411 l~-LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+. |||.+|++|.|+..||...+
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHhCCeeeccceeeccccccCc
Confidence 99 99999999999999996554
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.1e-18 Score=175.45 Aligned_cols=256 Identities=21% Similarity=0.302 Sum_probs=178.8
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccC-CCC-CC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRK-KSF-GQ 237 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~-~~~-~~ 237 (442)
+|---+..+|+++|.+||-+.++.++.+..+.-.-++=|..+ . .+ ..+...- +.- +-+ -.
T Consensus 42 Iprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~-------~----tr---k~a~~a~----~Alhn~ktlp 103 (510)
T KOG0144|consen 42 IPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKY-------Y----TR---KEADEAI----NALHNQKTLP 103 (510)
T ss_pred CCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEe-------c----cH---HHHHHHH----HHhhcccccC
Confidence 455558899999999999999999999998653111111110 0 00 0000000 000 000 01
Q ss_pred CCC-CCCCccchhhhh-ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH
Q 013503 238 GKR-RMNSRTSLAQRE-EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 238 g~~-~~~~r~~~~~~~-~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~ 314 (442)
|.. ...-+.-+.+++ -...+.|||+-|+..+||.+++++|++||.|++|+|.+|..+ ++|||||.|.+.|.|..||+
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aik 183 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIK 183 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHH
Confidence 111 011111111111 135788999999999999999999999999999999998764 89999999999999999999
Q ss_pred -hcCcc-cCC--ccEEEeccCCCCCC------------------------------------------------------
Q 013503 315 -LAGTM-LGF--YPVRVLPSKTAIAP------------------------------------------------------ 336 (442)
Q Consensus 315 -Lng~~-l~G--r~L~V~~s~~~~~~------------------------------------------------------ 336 (442)
|||.. +.| .||.|+++++....
T Consensus 184 a~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~ 263 (510)
T KOG0144|consen 184 ALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGL 263 (510)
T ss_pred hhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccc
Confidence 99865 666 48999886541000
Q ss_pred -----CC------------------------------C--CC----CC-------CCc----------------------
Q 013503 337 -----VN------------------------------P--TF----LP-------RTE---------------------- 346 (442)
Q Consensus 337 -----~~------------------------------p--~~----~p-------~~~---------------------- 346 (442)
.+ + .+ .+ ...
T Consensus 264 ~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~ 343 (510)
T KOG0144|consen 264 PPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPA 343 (510)
T ss_pred cCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCch
Confidence 00 0 00 00 000
Q ss_pred --------------------------------------------------------------------------hhhhcc
Q 013503 347 --------------------------------------------------------------------------DEREMC 352 (442)
Q Consensus 347 --------------------------------------------------------------------------~~~~~~ 352 (442)
+.+...
T Consensus 344 ~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpe 423 (510)
T KOG0144|consen 344 NYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPE 423 (510)
T ss_pred hcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCC
Confidence 000111
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
...+||.+||.+.-+.||...|.+ ||.|.+.++..|+ +-+++|+||.|++..+|.+||. |||..+++++++|...+
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~p-fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQP-FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhcc-ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 247999999999999999999998 9999999998887 7899999999999999999999 99999999999999876
Q ss_pred CCCCC
Q 013503 430 TPVRP 434 (442)
Q Consensus 430 ~~~~p 434 (442)
....|
T Consensus 503 ~~~np 507 (510)
T KOG0144|consen 503 DRNNP 507 (510)
T ss_pred ccCCC
Confidence 65444
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.73 E-value=8.4e-18 Score=167.53 Aligned_cols=169 Identities=21% Similarity=0.301 Sum_probs=147.1
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||++|++++|+|.|++.|.+||+|.+|.+++|+.+ ++||+||+|++.+...+++....+.|.|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 6889999999999999999999999999999999999865 59999999999999999999888889999998887632
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~A 410 (442)
...... ........+|||++||..++++++++.|++ ||.|..+.++.|. ...+||+||.|.+.+++.++
T Consensus 85 r~~~~~--------~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTK--------VGRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred cccccc--------cccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEecccccccee
Confidence 211111 011113578999999999999999999998 9999999999987 58999999999999999999
Q ss_pred HHhCCceeCCeeEEEeecCCCC
Q 013503 411 LNCSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 411 l~LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+.+.-+.|+|+.+.|..|.+..
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred cccceeeecCceeeEeeccchh
Confidence 9999999999999999997754
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=2.7e-17 Score=156.81 Aligned_cols=183 Identities=23% Similarity=0.377 Sum_probs=146.5
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcc-cCC--ccEE
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTM-LGF--YPVR 326 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~-l~G--r~L~ 326 (442)
...+++.|||+-|...-.|||++.+|..||.|.+|.+.+.... ++|+|||.|.+.-+|..||. |+|.. +-| ..|.
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3447889999999999999999999999999999999997765 79999999999999999999 98865 434 4566
Q ss_pred EeccCCCC------------------------------------------------------------------------
Q 013503 327 VLPSKTAI------------------------------------------------------------------------ 334 (442)
Q Consensus 327 V~~s~~~~------------------------------------------------------------------------ 334 (442)
|+++++..
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 66654300
Q ss_pred --CCCCC--------C-----------------C---------------------------CC-----------------
Q 013503 335 --APVNP--------T-----------------F---------------------------LP----------------- 343 (442)
Q Consensus 335 --~~~~p--------~-----------------~---------------------------~p----------------- 343 (442)
.+..| . + .|
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 00000 0 0 00
Q ss_pred ---------------CCc------hhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEE
Q 013503 344 ---------------RTE------DEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVE 400 (442)
Q Consensus 344 ---------------~~~------~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVe 400 (442)
..+ .......++|||..||.+..+.||..+|-+ ||.|.+.++..|. +.+++|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccccceeeEe
Confidence 000 000223569999999999999999999999 9999999999887 7899999999
Q ss_pred eCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCC
Q 013503 401 FVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 401 F~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
|+++.+|+.|+. |||..|+-++|+|...++....|
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 99999999999999987765444
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=9.3e-16 Score=139.60 Aligned_cols=157 Identities=18% Similarity=0.274 Sum_probs=125.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
..++|||+|||.++.+.+|.++|-+||.|..|.+...+. .-.||||+|+++.+|+.|+. -+|..++|+.|+|.++...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 578999999999999999999999999999998875443 34799999999999999999 9999999999999997643
Q ss_pred CCCCCCC--C-----------CCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEE
Q 013503 334 IAPVNPT--F-----------LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVE 400 (442)
Q Consensus 334 ~~~~~p~--~-----------~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVe 400 (442)
....... + ..+.+.. .-....|.|++||++.+++||++...+ -|.|....+.+| |++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgpps-rrSe~RVvVsGLp~SgSWQDLKDHmRe-aGdvCfadv~rD-----g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPS-RRSEYRVVVSGLPPSGSWQDLKDHMRE-AGDVCFADVQRD-----GVGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcc-cccceeEEEecCCCCCchHHHHHHHHh-hCCeeeeeeecc-----cceeee
Confidence 2111100 0 0000000 111257899999999999999999998 799999988765 378999
Q ss_pred eCCHHHHHHHHH-hCCceeC
Q 013503 401 FVMAESAIAALN-CSGVVLG 419 (442)
Q Consensus 401 F~s~e~A~~Al~-LnG~~l~ 419 (442)
|...|+.+.|+. |....+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 999999999998 7765543
No 35
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.63 E-value=4e-15 Score=152.33 Aligned_cols=170 Identities=24% Similarity=0.248 Sum_probs=135.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
......|.+++||+++|+++|.+||+.| .|.++.+.+......|-|||+|.++|++++|++.+...+..+-|.|..+..
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 4456779999999999999999999999 678888877766678999999999999999999999999999999988643
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC-CCcceEEEEEeCCHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY-HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~--v~I~~d~-g~~rG~AFVeF~s~e~A~~ 409 (442)
... +..+.+.... .......|.+++||+.||++||.++|+.+ +|.. +.++.+. +++.|-|||.|++.+.|++
T Consensus 86 ~e~--d~~~~~~g~~-s~~~d~vVRLRGLPfscte~dI~~FFaGL--~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 86 AEA--DWVMRPGGPN-SSANDGVVRLRGLPFSCTEEDIVEFFAGL--EIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred ccc--cccccCCCCC-CCCCCceEEecCCCccCcHHHHHHHhcCC--cccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 221 1111111111 11344689999999999999999999864 4443 3455565 6899999999999999999
Q ss_pred HHHhCCceeCCeeEEEeec
Q 013503 410 ALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 410 Al~LnG~~l~Gr~L~V~~A 428 (442)
|+.-|...++.+.|.|-.+
T Consensus 161 Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHhhccceEEeehh
Confidence 9998888899999988765
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.61 E-value=1.1e-14 Score=136.74 Aligned_cols=168 Identities=24% Similarity=0.375 Sum_probs=135.7
Q ss_pred cEEEEEcCCCcChHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 257 RTVYVSDIDQQVTEEQLAA----LFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~e----lF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
.||||.||+..+..++|+. +|++||.|.+|......+ .+|-|||.|.+.+.|-.|+. |+|..+.|++++|++++
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 3999999999999999888 999999999998876543 46999999999999999999 99999999999999986
Q ss_pred CCCCCCC---CCCCCCC---------------------------------chhhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 332 TAIAPVN---PTFLPRT---------------------------------EDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 332 ~~~~~~~---p~~~p~~---------------------------------~~~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
....... .++.++. ......+...+++.|||.+++.+.+..+|+
T Consensus 89 s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 89 SDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFE 168 (221)
T ss_pred CccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHh
Confidence 5321110 0110000 011123456899999999999999999999
Q ss_pred hcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeecC
Q 013503 376 SVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSK 429 (442)
Q Consensus 376 ~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~-Gr~L~V~~Ak 429 (442)
+ |.....++++... .+.|||+|.+...|..|.. +.|..+- ...++|.+++
T Consensus 169 q-f~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 169 Q-FPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred h-CcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 8 9999999987643 3489999999999999998 9987776 8889988875
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=9.9e-15 Score=131.14 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=75.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|.++.|+.|. ++++|||||+|.+.++|++|++ ||+..+.|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3478999999999999999999998 9999999999886 6899999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 013503 429 KTPVR 433 (442)
Q Consensus 429 k~~~~ 433 (442)
++...
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.57 E-value=1.3e-14 Score=150.32 Aligned_cols=166 Identities=21% Similarity=0.260 Sum_probs=126.3
Q ss_pred EEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCC
Q 013503 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (442)
Q Consensus 259 LfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~ 335 (442)
|||+||.+++|+++|+.+|++||.|..|.+..|.. .++|||||+|.+.++|.+|+. |||..|-|+.|+|..-.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999963 469999999999999999998 999999999999865321110
Q ss_pred CCC--CCC-------------------------CCCC-------------------------------chhhh-------
Q 013503 336 PVN--PTF-------------------------LPRT-------------------------------EDERE------- 350 (442)
Q Consensus 336 ~~~--p~~-------------------------~p~~-------------------------------~~~~~------- 350 (442)
... ..+ .+.. .....
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 000 000 0000 00000
Q ss_pred cccceeeeeCC--CCCCC--------HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC
Q 013503 351 MCARTIYCTNI--DKKVT--------QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG 419 (442)
Q Consensus 351 ~~~~tL~V~NL--p~~vT--------eedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~ 419 (442)
..+.++.++|+ |.+.| .+||.+-+++ ||+|..|.+.++. -|+.||.|.+.++|..|++ |||.+|.
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd~ns---~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVDKNS---AGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEccCC---CceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 22345566665 22222 3688888898 9999999885432 2799999999999999999 9999999
Q ss_pred CeeEEEeec
Q 013503 420 SLPIRVSPS 428 (442)
Q Consensus 420 Gr~L~V~~A 428 (442)
|+.|.+.|-
T Consensus 517 gr~Ita~~~ 525 (549)
T KOG0147|consen 517 GRMITAKYL 525 (549)
T ss_pred cceeEEEEe
Confidence 999999884
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=3.7e-14 Score=150.41 Aligned_cols=172 Identities=24% Similarity=0.310 Sum_probs=136.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...+.++|+|||..+..++|.+.|..||+|..+.+. +.+ --|+|+|.++.+|.+|.. |....+...++++.+..
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G--~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG--TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC--ccc--ceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 3456789999999999999999999999999999554 321 159999999999999999 99999999999887764
Q ss_pred CCCCCCCCCC--------CC-----------------CCch-----------hhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 332 TAIAPVNPTF--------LP-----------------RTED-----------EREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 332 ~~~~~~~p~~--------~p-----------------~~~~-----------~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
.......|.. .+ .+.+ ......++|||+||++.+|.++|...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 4322211100 00 0000 0011223499999999999999999999
Q ss_pred hcCCceEEEEEeccC-C----CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 376 SVCGEVYRLRLLGDY-H----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 376 ~~fG~I~~v~I~~d~-g----~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
. .|.|.++.|.+.. . .+.|||||+|.+.++|.+|+. |+|+.|.|+.|.|.++.
T Consensus 538 k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 538 K-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred h-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 8 8999999998754 2 366999999999999999999 99999999999999987
No 40
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=1.9e-13 Score=134.75 Aligned_cols=179 Identities=18% Similarity=0.246 Sum_probs=138.8
Q ss_pred hhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCee--------EEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcC
Q 013503 248 LAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAG 317 (442)
Q Consensus 248 ~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~--------~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng 317 (442)
+...++...+.|||.|||.++|-+++.++|++||-|. .|+++++..+ -+|=|.+.|-..++++-|+. |++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 4445566677799999999999999999999999775 4888887765 48999999999999999999 999
Q ss_pred cccCCccEEEeccCCCCCCC----------CCC-------------CCCCC-chhhhcccceeeeeCCC----CCCC---
Q 013503 318 TMLGFYPVRVLPSKTAIAPV----------NPT-------------FLPRT-EDEREMCARTIYCTNID----KKVT--- 366 (442)
Q Consensus 318 ~~l~Gr~L~V~~s~~~~~~~----------~p~-------------~~p~~-~~~~~~~~~tL~V~NLp----~~vT--- 366 (442)
..|.|+.|+|..++-..... ... ..|.. ...+....++|.++|+= ...+
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 99999999998865321110 000 11111 11223345789999982 1223
Q ss_pred ----HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 367 ----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 367 ----eedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
++||.+-+++ ||.|.+|.|.- .++.|.+-|.|.+.++|..|+. |+|.+|.||.|..+...
T Consensus 286 ~~dlkedl~eec~K-~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 286 LNDLKEDLTEECEK-FGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHHHHH-hCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 4677778898 99999998863 2567899999999999999999 99999999999987653
No 41
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.54 E-value=1.8e-14 Score=146.73 Aligned_cols=154 Identities=21% Similarity=0.284 Sum_probs=104.8
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQG 238 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~g 238 (442)
+|+..+.++|.++|+++|++..+.++.+..+...-+++|-.+. -. .... ..-...++. -.+
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~-----~~---------e~A~----~Ai~~LnG~~l~g 176 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFG-----SE---------ADSQ----RAIKNLNGITVRN 176 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEc-----cH---------HHHH----HHHHHcCCCccCC
Confidence 7999999999999999999999988877654432122222111 00 0000 000000000 011
Q ss_pred CCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-h
Q 013503 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-L 315 (442)
Q Consensus 239 ~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-L 315 (442)
++. ..............++|||+|||.++|+++|+++|++||.|..|++..|+.+ ++|||||+|.+.++|++|++ |
T Consensus 177 r~i-~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 177 KRL-KVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred cee-eeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 110 0000001112234678999999999999999999999999999999988654 58999999999999999999 9
Q ss_pred cCcccCC--ccEEEeccCC
Q 013503 316 AGTMLGF--YPVRVLPSKT 332 (442)
Q Consensus 316 ng~~l~G--r~L~V~~s~~ 332 (442)
++..+.| ++|.|.+++.
T Consensus 256 ng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CCCccCCCceeEEEEECCc
Confidence 9999876 6899988754
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.53 E-value=6.1e-14 Score=126.05 Aligned_cols=78 Identities=26% Similarity=0.474 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+|.++.|+.+ ++|||||+|.+.++|++|++ |++..|.|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 5778999999999999999999999999999999988754 68999999999999999998 99999999999999975
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 3
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.50 E-value=9.8e-13 Score=132.87 Aligned_cols=174 Identities=21% Similarity=0.244 Sum_probs=139.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhh-cCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~-~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..|.+||+|||+++..++|+++|. +.|+|+.|.+..|... ++|+|.|+|+++|.+++|++ ||...+.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456799999999999999999997 6799999999998764 69999999999999999999 99999999999997643
Q ss_pred CCCC-------------------------CCC----------CCCCCCCchh----------------------------
Q 013503 332 TAIA-------------------------PVN----------PTFLPRTEDE---------------------------- 348 (442)
Q Consensus 332 ~~~~-------------------------~~~----------p~~~p~~~~~---------------------------- 348 (442)
.... ..+ ..+.+++.+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 2000 000 0000000000
Q ss_pred --------hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCcee
Q 013503 349 --------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVL 418 (442)
Q Consensus 349 --------~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l 418 (442)
......++||.||.+.+....|++.|.- -|.|..|.+-.|+ +.++|+|.++|..+-+|..|+. +++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 0222357899999999999999999995 8999999988887 7899999999999999999999 888777
Q ss_pred CCeeEEEeecC
Q 013503 419 GSLPIRVSPSK 429 (442)
Q Consensus 419 ~Gr~L~V~~Ak 429 (442)
..++..+....
T Consensus 282 ~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 282 FDRRMTVRLDR 292 (608)
T ss_pred ccccceeeccc
Confidence 77877776643
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=1.1e-13 Score=106.80 Aligned_cols=68 Identities=31% Similarity=0.550 Sum_probs=63.6
Q ss_pred EEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEE
Q 013503 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (442)
Q Consensus 259 LfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d-~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~ 326 (442)
|||+|||+++|+++|+++|++||.|..+.+..+ .+..+|||||+|.+.++|++|++ ++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999986 34468999999999999999999 999999999885
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=5.2e-14 Score=133.05 Aligned_cols=157 Identities=26% Similarity=0.337 Sum_probs=126.8
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCC
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAP 336 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~ 336 (442)
.|||++||+.+.+.+|.+||..||.|..+.+.. ||+||+|.+..+|..|+. +++..|.|-.+.|.++......
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 589999999999999999999999999998864 799999999999999998 9999999988888887632111
Q ss_pred C-CCC--CCC---CCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013503 337 V-NPT--FLP---RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 337 ~-~p~--~~p---~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~A 410 (442)
. .+. ..+ ............+.|.|++..+.+.+|.+.|++ +|++....+ ..+++||+|.+.++|.+|
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh------hccccceeehhhhhhhhc
Confidence 1 000 000 001111223467889999999999999999998 999855544 456899999999999999
Q ss_pred HH-hCCceeCCeeEEEee
Q 013503 411 LN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 411 l~-LnG~~l~Gr~L~V~~ 427 (442)
++ |+|..+.|++|.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEK 167 (216)
T ss_pred chhccchhhcCceeeecc
Confidence 99 999999999999944
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=2.6e-13 Score=104.78 Aligned_cols=68 Identities=29% Similarity=0.490 Sum_probs=64.8
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc-CCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 013503 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD-YHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 424 (442)
Q Consensus 356 L~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d-~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~ 424 (442)
|||+|||..+|+++|+++|++ ||.|..+.+..+ .+..+|+|||+|.+.++|.+|++ |+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999998 999999999996 47899999999999999999999 999999999986
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=1.4e-12 Score=122.14 Aligned_cols=165 Identities=22% Similarity=0.265 Sum_probs=121.6
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEeCCHHHHHHHHH-hcCcccC---Cc
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLG---FY 323 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~---skG~AFVeF~s~e~A~kAl~-Lng~~l~---Gr 323 (442)
.++..-|||||.+||.++...+|+.+|..|--.+.+.+....+. .+-+|||.|.+..+|..|+. |||..|+ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 44557899999999999999999999999866666666543322 25799999999999999999 9999986 67
Q ss_pred cEEEeccCCCCCCCC------C---C-----------C------------------------------------------
Q 013503 324 PVRVLPSKTAIAPVN------P---T-----------F------------------------------------------ 341 (442)
Q Consensus 324 ~L~V~~s~~~~~~~~------p---~-----------~------------------------------------------ 341 (442)
.|.+..++.+..... | . +
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 888877543211000 0 0 0
Q ss_pred -CCCCch--h-------hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 342 -LPRTED--E-------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 342 -~p~~~~--~-------~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
.|.... + ....+.||||.||..+++|++|+.+|+. |-....++|....| ...||++|++.+.|..||
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRARGG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecCCC--cceEeecHHHHHHHHHHH
Confidence 000000 0 0112358999999999999999999998 87777777743333 448999999999999999
Q ss_pred H-hCCcee
Q 013503 412 N-CSGVVL 418 (442)
Q Consensus 412 ~-LnG~~l 418 (442)
. |+|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 9 988665
No 48
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.44 E-value=1.3e-12 Score=123.79 Aligned_cols=156 Identities=27% Similarity=0.374 Sum_probs=116.5
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~--~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
.++|||+|||.++|+++|+++|..||.|..+.+..++ ..++|||||+|.+.++|..|+. +++..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999986 3469999999999999999999 999999999999999532
Q ss_pred --CCCCCCC-----CC---CCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC--CcceEEEEE
Q 013503 333 --AIAPVNP-----TF---LPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH--HSTRIAFVE 400 (442)
Q Consensus 333 --~~~~~~p-----~~---~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g--~~rG~AFVe 400 (442)
....... .. ..............+++.+++..++..++...|.. +|.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccccc
Confidence 1100000 00 01111122344578999999999999999999998 99997777765542 233334444
Q ss_pred eCCHHHHHHHHH
Q 013503 401 FVMAESAIAALN 412 (442)
Q Consensus 401 F~s~e~A~~Al~ 412 (442)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444444
No 49
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-12 Score=130.13 Aligned_cols=259 Identities=19% Similarity=0.289 Sum_probs=171.8
Q ss_pred CCCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCc--c--cCCCCCCCCCCCCccccccCC
Q 013503 158 GGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSL--I--FNNHNARNGNVNANAAVRRKK 233 (442)
Q Consensus 158 ~~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~--~--~~~~~~~~g~~~g~~~~r~~~ 233 (442)
|.+.|.-..+.|+-.|..|||+..+.|-=+..+..+-+++|.++- .|-. + -..++.--|+.+- ...+..
T Consensus 119 GSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYE-----vPEaAqLAlEqMNg~mlGGRNi--KVgrPs 191 (544)
T KOG0124|consen 119 GSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYE-----VPEAAQLALEQMNGQMLGGRNI--KVGRPS 191 (544)
T ss_pred eeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEe-----CcHHHHHHHHHhccccccCccc--cccCCC
Confidence 337888888999999999999999999888877775544443311 1100 0 0000000000000 000111
Q ss_pred CCCCCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHH
Q 013503 234 SFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARA 311 (442)
Q Consensus 234 ~~~~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~k 311 (442)
+..+..+ -+..-+++-..-..|||..+.++.++++|+..|+.||+|..|.+.+++.+ ++||+||+|.+..+...
T Consensus 192 NmpQAQp----iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 192 NMPQAQP----IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCcccch----HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 1122111 11222333345567999999999999999999999999999999998754 69999999999999999
Q ss_pred HHH-hcCcccCCccEEEeccCCCCC-------------------------------------------------------
Q 013503 312 ALN-LAGTMLGFYPVRVLPSKTAIA------------------------------------------------------- 335 (442)
Q Consensus 312 Al~-Lng~~l~Gr~L~V~~s~~~~~------------------------------------------------------- 335 (442)
|+. ||-..++|..|+|..+-+...
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~ 347 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQ 347 (544)
T ss_pred HhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccC
Confidence 999 999999999999866432000
Q ss_pred ----------------------CCCCCC---------------CC--------CCch--h--------------------
Q 013503 336 ----------------------PVNPTF---------------LP--------RTED--E-------------------- 348 (442)
Q Consensus 336 ----------------------~~~p~~---------------~p--------~~~~--~-------------------- 348 (442)
+..|.. .| .... +
T Consensus 348 p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI 427 (544)
T KOG0124|consen 348 PLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSI 427 (544)
T ss_pred CCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccc
Confidence 000000 00 0000 0
Q ss_pred --------------hhcccceeeeeCC--CCCCC---HHHHHHHhhhcCCceEEEEEeccC-CC-----cceEEEEEeCC
Q 013503 349 --------------REMCARTIYCTNI--DKKVT---QADVKLFFESVCGEVYRLRLLGDY-HH-----STRIAFVEFVM 403 (442)
Q Consensus 349 --------------~~~~~~tL~V~NL--p~~vT---eedL~~~F~~~fG~I~~v~I~~d~-g~-----~rG~AFVeF~s 403 (442)
+...++.|.++|+ |.+++ +.+|.+.+++ ||.|.+|.|.... +. -----||+|..
T Consensus 428 ~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgK-fG~V~rViI~nekq~e~edaeiiVKIFVefS~ 506 (544)
T KOG0124|consen 428 SGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGK-FGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSI 506 (544)
T ss_pred cCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhc-ccceeEEEEEecccccccchhhhheeeeeech
Confidence 0223457778887 44444 4688999998 9999999887644 11 11246999999
Q ss_pred HHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 404 AESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 404 ~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++.+|.. |+|.+|+|+++..+..
T Consensus 507 ~~e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 507 ASETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred hhHHHHHHHhhccceecCceeehhhh
Confidence 999999999 9999999999987653
No 50
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=4.1e-12 Score=127.69 Aligned_cols=169 Identities=27% Similarity=0.318 Sum_probs=133.7
Q ss_pred CcEEEEEcCC-CcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 256 RRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 256 ~rtLfV~NLp-~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
...|.|.||. ..+|.+.|..+|+-||.|..|+|...++ --|+|+|.+...|+-|++ |+|..+.|++|+|.+++-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 5789999996 4599999999999999999999998776 379999999999999999 9999999999999998653
Q ss_pred CCCCCCC----------C----CCCC--chh-----hhcccceeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCC
Q 013503 334 IAPVNPT----------F----LPRT--EDE-----REMCARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYH 391 (442)
Q Consensus 334 ~~~~~p~----------~----~p~~--~~~-----~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~-I~~v~I~~d~g 391 (442)
....... + ..+. +.. .-.++.++++.|+|.+++||||+..|.+ -|- |+..... +
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~-~g~~vkafkff---~ 449 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQE-PGGQVKAFKFF---Q 449 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhc-CCceEEeeeec---C
Confidence 2211110 0 0000 000 1234569999999999999999999998 564 4544443 2
Q ss_pred CcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eEEEeecCCC
Q 013503 392 HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRVSPSKTP 431 (442)
Q Consensus 392 ~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-~L~V~~Ak~~ 431 (442)
+.+.+|++.+.+.|+|..|+- ++.+.+++. .|+|+|++..
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 334599999999999999998 999988876 9999999864
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=127.00 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=72.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~~ 333 (442)
..++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ++|||||+|.++++|+.|+.|+|..|.|++|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 468999999999999999999999999999999998864 469999999999999999999999999999999997543
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.4e-12 Score=126.40 Aligned_cols=77 Identities=26% Similarity=0.441 Sum_probs=71.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||+|||+.+|+++|+++|+. ||+|.+|+|+.+.. .+|||||+|.+.++|..|+.|+|..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 479999999999999999999998 99999999998864 578999999999999999999999999999999998743
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=3.5e-12 Score=99.41 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=62.1
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 013503 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 424 (442)
Q Consensus 356 L~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~ 424 (442)
|||+|||+.+++++|+++|+. ||.|..+.+..++ +..+|+|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999998 9999999999875 6889999999999999999999 888999999985
No 54
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.8e-12 Score=127.25 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=75.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|+|+|||+...+-||+.+|++ ||+|.+|.|+.++..+||||||+|++.++|++|.+ |||..+.||+|.|..|..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHh-hCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3478999999999999999999998 99999999999886799999999999999999998 999999999999999876
Q ss_pred CCC
Q 013503 431 PVR 433 (442)
Q Consensus 431 ~~~ 433 (442)
.+.
T Consensus 174 rV~ 176 (376)
T KOG0125|consen 174 RVH 176 (376)
T ss_pred hhc
Confidence 643
No 55
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.1e-12 Score=113.19 Aligned_cols=82 Identities=29% Similarity=0.392 Sum_probs=74.0
Q ss_pred hhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccE
Q 013503 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPV 325 (442)
Q Consensus 249 ~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L 325 (442)
..+.-..++||||+||++.+|||+|.++|+.+|+|..|.|--|+. ++-|||||+|-+.++|+.|++ ++|+.|..++|
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 334456799999999999999999999999999999998876764 468999999999999999999 99999999999
Q ss_pred EEecc
Q 013503 326 RVLPS 330 (442)
Q Consensus 326 ~V~~s 330 (442)
.+.+.
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 99884
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=4.5e-12 Score=98.76 Aligned_cols=68 Identities=35% Similarity=0.568 Sum_probs=60.9
Q ss_pred EEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEE
Q 013503 259 VYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (442)
Q Consensus 259 LfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~ 326 (442)
|||+|||+++|+++|+++|+.||.|..+++..++.+ ++|+|||+|.+.++|.+|++ +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999987653 58999999999999999999 777999999874
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=7.5e-12 Score=119.74 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~~ 333 (442)
...+|||+||++.+|+++|+++|+.||+|.+|+|++|.. ..++|||+|.++++|+.|+.|+|..|.+++|.|.+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 457999999999999999999999999999999999854 358999999999999999999999999999999987543
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.7e-12 Score=120.75 Aligned_cols=78 Identities=28% Similarity=0.375 Sum_probs=74.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..+|.|.||+.+++++||+++|.+ ||.|.+|.|.+|+ |.++|||||.|.+.++|++|++ |||.-+..-.|+|+|++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 468999999999999999999998 9999999999997 7999999999999999999999 99999999999999998
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
|.
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 59
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.5e-11 Score=93.58 Aligned_cols=71 Identities=34% Similarity=0.536 Sum_probs=66.5
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
+|+|+|||..+++++|+++|++ ||.|..+.+..+.+.++|+|||+|.+.++|..|++ ++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999998 99999999998777788999999999999999999 99999999999874
No 60
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=93.88 Aligned_cols=71 Identities=41% Similarity=0.619 Sum_probs=65.8
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
+|||+|||..+++++|+++|.+||.|..+.+..++..++|+|||+|.+.++|+.|++ +++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999998775568999999999999999999 99999999998873
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2e-11 Score=127.96 Aligned_cols=176 Identities=21% Similarity=0.251 Sum_probs=135.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
......+||++||...++.++.++...||++....++.+..+ ++||||.+|.+......|++ |||+.+++++|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 445677999999999999999999999999999999998873 69999999999999999999 999999999999988
Q ss_pred cCCCCCCCCCCCC---------CCC-chhhhcccceeeeeCCCC--CC-C-------HHHHHHHhhhcCCceEEEEEecc
Q 013503 330 SKTAIAPVNPTFL---------PRT-EDEREMCARTIYCTNIDK--KV-T-------QADVKLFFESVCGEVYRLRLLGD 389 (442)
Q Consensus 330 s~~~~~~~~p~~~---------p~~-~~~~~~~~~tL~V~NLp~--~v-T-------eedL~~~F~~~fG~I~~v~I~~d 389 (442)
+-......++... +.. ..........|.+.|+-. ++ . .|+++.-+.+ ||.|.+|.|+++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCC
Confidence 6432221111110 000 011122345566666521 11 1 2456667778 999999999987
Q ss_pred -C----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 390 -Y----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 390 -~----g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
. .-..|-.||+|.+.+++++|++ |+|..|.|+.|..+|-.
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 3 2467789999999999999999 99999999999999854
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1e-11 Score=121.95 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=75.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....+.|+|+|||+...+-||+.+|.+||.|.+|.|+.+..++||||||+|++.+||++|-+ |+|..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34678899999999999999999999999999999999999999999999999999999998 99999999999999875
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 43
No 63
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.9e-11 Score=115.72 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=70.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+|+|+||++.+|+++|+++|+. ||+|.+|+|+++. ..+++|||+|.++++|..|+.|+|..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRSG-EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecCC-CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 479999999999999999999998 9999999999885 456799999999999999999999999999999998654
No 64
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.25 E-value=1.2e-10 Score=117.18 Aligned_cols=171 Identities=23% Similarity=0.268 Sum_probs=131.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC--CccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG--FYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~--Gr~L~V~~s~ 331 (442)
.--.+.|.|+-+.+|-+-|..+|++||.|..|......++ =-|+|+|.+.+.|..|.. |+|..+- -+.|+|.+++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~--FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk 226 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG--FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK 226 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc--hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence 4456899999999999999999999999998877765442 149999999999999988 9998873 3578887764
Q ss_pred CCC--------------CCC---C-----------------------CCCCCCCc------hhh-hc--ccceeeeeCCC
Q 013503 332 TAI--------------APV---N-----------------------PTFLPRTE------DER-EM--CARTIYCTNID 362 (442)
Q Consensus 332 ~~~--------------~~~---~-----------------------p~~~p~~~------~~~-~~--~~~tL~V~NLp 362 (442)
-.. .+. . |...|... +.+ +. ....|.|.||.
T Consensus 227 lt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln 306 (492)
T KOG1190|consen 227 LTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLN 306 (492)
T ss_pred cccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCc
Confidence 210 000 0 00000000 000 11 14678899997
Q ss_pred CC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 363 KK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 363 ~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.+ +|.+-|..+|+- ||.|.+|+|+.+++ --|.|.|.+...|+-|++ |+|..+.|++|+|.+++-.
T Consensus 307 ~~~VT~d~LftlFgv-YGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGV-YGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred hhccchhHHHHHHhh-hcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 75 999999999995 99999999998764 269999999999999999 9999999999999999765
No 65
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=112.04 Aligned_cols=75 Identities=28% Similarity=0.422 Sum_probs=70.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..+.|||+||+..+++.+|...|..||+|.+|+|...+. |||||+|+++.+|+.|+. |+|..|.|..|.|+.+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 478899999999999999999999999999999988655 899999999999999999 999999999999999853
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3e-11 Score=114.63 Aligned_cols=77 Identities=27% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+..+|.|.|||.++++++|.+||.+||.|..|.+.+|+.+ ++|||||.|.+.++|.+||+ |||.-++.--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 6889999999999999999999999999999999999987 59999999999999999999 99999999999999986
No 67
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.23 E-value=1.6e-10 Score=115.21 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=127.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH---hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN---LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~---Lng~~l~Gr~L~V~~ 329 (442)
+..+-.|.|++|-..++|.+|.+.++.||+|..+..+..+. .|.|+|++.+.|+.++. -+...+.|++-.+.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r----~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR----QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc----eeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 34677899999999999999999999999999888876553 89999999999999987 355567888877777
Q ss_pred cCCCCCCCCCCCCCCCchhhhcccceee--eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHH
Q 013503 330 SKTAIAPVNPTFLPRTEDEREMCARTIY--CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESA 407 (442)
Q Consensus 330 s~~~~~~~~p~~~p~~~~~~~~~~~tL~--V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A 407 (442)
+....... +. ++.......|. |-|--+.+|-+-|..++.+ +|+|.+|.|++..+. .|.|||++.+.|
T Consensus 104 Stsq~i~R-----~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkngV---QAmVEFdsv~~A 172 (494)
T KOG1456|consen 104 STSQCIER-----PG--DESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKNGV---QAMVEFDSVEVA 172 (494)
T ss_pred chhhhhcc-----CC--CCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEeccce---eeEEeechhHHH
Confidence 63211111 11 11111223344 4444456999999999998 999999999987553 699999999999
Q ss_pred HHHHH-hCCceeC--CeeEEEeecCCC
Q 013503 408 IAALN-CSGVVLG--SLPIRVSPSKTP 431 (442)
Q Consensus 408 ~~Al~-LnG~~l~--Gr~L~V~~Ak~~ 431 (442)
++|.. |||..|. -+.|+|++|+|.
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcc
Confidence 99999 9997764 478999999875
No 68
>PLN03213 repressor of silencing 3; Provisional
Probab=99.22 E-value=3.1e-11 Score=123.63 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=71.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCH--HHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMA--ESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~--e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
...+|||+||++.++++||+.+|++ ||.|.+|.|++..| ||||||+|.+. .++.+|++ |||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4478999999999999999999998 99999999997767 99999999987 78999999 9999999999999999
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
++.
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 864
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2e-11 Score=105.54 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.8
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
...+.||||+||.+.++||.|.++|++ ||+|..|.+-.|. ..+-|||||+|.+.++|..|+. ++|..+..++|+|.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 345689999999999999999999998 9999999887776 3688999999999999999999 99999999999999
Q ss_pred ec
Q 013503 427 PS 428 (442)
Q Consensus 427 ~A 428 (442)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 85
No 70
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=5.4e-11 Score=99.40 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=71.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...+-|||+|||+++|.|++.++|.+||.|..|++-..+.+ +|.|||.|++..+|.+|++ |+|..+.++.|.|.+..
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 346788999999999999999999999999999999776654 5999999999999999999 99999999999999863
No 71
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=2.1e-10 Score=118.67 Aligned_cols=156 Identities=21% Similarity=0.308 Sum_probs=115.0
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-----Cce---EEEEEeCCHHHHHHHHH-hcC---c
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLR---FAFIEFTDEEGARAALN-LAG---T 318 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-----skG---~AFVeF~s~e~A~kAl~-Lng---~ 318 (442)
+.+..++.|||++||++++|++|...|..||.+. |.+....+. ++| |+|+.|+++..+..-+. +.. .
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~ 332 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGN 332 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccc
Confidence 4456788999999999999999999999999854 455432211 355 99999999999888776 321 1
Q ss_pred c--------cCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC
Q 013503 319 M--------LGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 390 (442)
Q Consensus 319 ~--------l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~ 390 (442)
. +..+.++|.+... .+..|. ......-.+.+||||++||.-++.++|..+|+..||.|..+-|-.|+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~l----aDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVL----ADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred eEEEEecCcccccceeEEeeEe----ccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence 0 1222233333211 011111 11222234568999999999999999999999889999999999985
Q ss_pred --CCcceEEEEEeCCHHHHHHHHH
Q 013503 391 --HHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 391 --g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
..++|-|-|.|.+..+-.+||.
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHh
Confidence 5899999999999999999997
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.20 E-value=2.3e-09 Score=107.05 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=135.2
Q ss_pred ccCCcEEEEEcCCCc-ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~-~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....+.+.|-+|... ++-+.|..+|..||.|+.|++++.+. |.|.|++.+..+.++|+. ||+..+.|.+|.|..+
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 346788999999865 67799999999999999999997665 799999999999999999 9999999999999998
Q ss_pred CCCCC-CCCCC-------------------CCCCCc---hhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEE
Q 013503 331 KTAIA-PVNPT-------------------FLPRTE---DEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRL 386 (442)
Q Consensus 331 ~~~~~-~~~p~-------------------~~p~~~---~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I 386 (442)
+.... +..+- |..... .....++++|+.-|.|..+||+.|.++|.. .+ .-.++++
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ne-k~v~~~svkv 439 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNE-KDVPPTSVKV 439 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhh-cCCCcceEEe
Confidence 75422 22111 110000 011345789999999999999999999987 45 4567777
Q ss_pred eccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe------eEEEeecCC
Q 013503 387 LGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL------PIRVSPSKT 430 (442)
Q Consensus 387 ~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr------~L~V~~Ak~ 430 (442)
...+.....-+.+||++.++|..||. +|...+.+. .|++.|+.+
T Consensus 440 Fp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts 490 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTS 490 (494)
T ss_pred ecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeeccc
Confidence 76554333468999999999999998 999888764 566666543
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.6e-11 Score=114.79 Aligned_cols=82 Identities=28% Similarity=0.373 Sum_probs=77.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
.++|||++|..++++.-|...|-+ ||.|..|.++.|. +++||||||+|...|+|.+|+. ||+..|.|+.|+|.+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 489999999999999999999999 9999999999996 6899999999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 013503 430 TPVRPR 435 (442)
Q Consensus 430 ~~~~pr 435 (442)
|...+-
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 875443
No 74
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=1.2e-10 Score=88.06 Aligned_cols=68 Identities=32% Similarity=0.494 Sum_probs=63.0
Q ss_pred eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 358 CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 358 V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
|+|||..+++++|+++|++ ||.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999998 9999999998874 5789999999999999999999 99999999999874
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.17 E-value=2.5e-10 Score=87.23 Aligned_cols=72 Identities=36% Similarity=0.540 Sum_probs=66.7
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
+|+|+|||..+++++|+++|+. ||.|..+.+..+. +.++|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999998 9999999999876 4678999999999999999999 999999999999874
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.16 E-value=7.7e-11 Score=120.83 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=69.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCH--HHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE--EGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~--e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....+||||||++.+|+++|+.+|..||.|.+|.|++.. .+|||||+|.+. .++.+||+ |||..++|+.|+|..+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 356789999999999999999999999999999999544 389999999987 78999999 9999999999999887
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 54
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=7.5e-11 Score=111.54 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=71.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+||+.+++.++|+++|++ ||+|....|+.|+ ++++|||||+|.+.++|.+|++--.-.|+||+-.+..|--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 478999999999999999999998 9999999999987 7999999999999999999999666789999998888754
No 78
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=7.9e-11 Score=117.66 Aligned_cols=172 Identities=20% Similarity=0.225 Sum_probs=129.2
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcC----CCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGC----GQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~----G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
.--|.+++||+++|+.++.+||.+- |..+.|.++..++ ...|-|||.|..+++|+.|+..+...++.|.|.+..|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3458899999999999999999632 3556677776644 4689999999999999999998888888888877665
Q ss_pred CCC-------------CCC-CCCCCC---CCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEE--EEEeccC
Q 013503 331 KTA-------------IAP-VNPTFL---PRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYR--LRLLGDY 390 (442)
Q Consensus 331 ~~~-------------~~~-~~p~~~---p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~--v~I~~d~ 390 (442)
... ..+ ...... |...-........|.+++||++.+.|||.++|.. |- .|.. |.+..+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flgd-Fa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGD-FATDIRFQGVHMVLNG 319 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHH-HhhhcccceeEEEEcC
Confidence 321 000 000111 1111111222468999999999999999999998 76 4544 6776664
Q ss_pred -CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 391 -HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 391 -g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
|++.|-|||+|.+.|+|..|.. ++.....++.|.|-.+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 8999999999999999999998 8888888998888664
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.8e-11 Score=104.05 Aligned_cols=77 Identities=23% Similarity=0.268 Sum_probs=72.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
...|||+++.+++|+++|.+.|.. ||+|+.+.+-.|. |..+|||+|+|++.++|++|++ +||..|.|+.|.|.|+=
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 468999999999999999999998 9999999998886 7899999999999999999999 99999999999999973
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
-
T Consensus 151 v 151 (170)
T KOG0130|consen 151 V 151 (170)
T ss_pred e
Confidence 3
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.15 E-value=5.8e-11 Score=110.23 Aligned_cols=81 Identities=25% Similarity=0.324 Sum_probs=75.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
...+|.|-||.+.+|.++|+.+|++ ||.|-+|.|+.|. ..++|||||.|....+|+.|++ |+|..|.|+.|+|+.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3468999999999999999999999 9999999999997 5899999999999999999999 9999999999999998
Q ss_pred CCCCC
Q 013503 429 KTPVR 433 (442)
Q Consensus 429 k~~~~ 433 (442)
+....
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 76544
No 81
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=8.2e-11 Score=106.79 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=70.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||+||+..+++.||..+|.. ||.|.+|.|... +.|||||||+++.+|..|+. |+|..|.|..|+|+.+.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 478999999999999999999997 999999999874 45699999999999999999 9999999999999998765
Q ss_pred CC
Q 013503 432 VR 433 (442)
Q Consensus 432 ~~ 433 (442)
++
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 43
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.6e-11 Score=111.89 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
.-+.|||++|++.++.+.|+++|++||+|++..++.|+.+ ++|||||+|++.++|.+|++-..-.|+||+-.+..+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 4567999999999999999999999999999999999875 7999999999999999999955667899988777653
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=2.6e-10 Score=87.14 Aligned_cols=72 Identities=44% Similarity=0.648 Sum_probs=66.0
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.. ++|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987653 47999999999999999999 999999999998863
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=1.7e-10 Score=87.19 Aligned_cols=68 Identities=38% Similarity=0.589 Sum_probs=62.1
Q ss_pred EEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 261 VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 261 V~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
|+|||..+++++|+++|++||.|..+.+..++. .++|||||+|.+.++|..|++ +++..+.|++|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988754 358999999999999999999 99999999998873
No 85
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=2e-10 Score=96.07 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=69.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+.|||+|||+.+|.|+..++|++ ||.|..|+|-...+ .+|.|||-|++..+|.+|++ |+|..+.++.|.|.+-++
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3478999999999999999999998 99999999965543 67899999999999999999 999999999999998654
No 86
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.13 E-value=4.1e-11 Score=109.35 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=110.4
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCCCCCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQGK 239 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~~~g~ 239 (442)
.+-+-+.+.|+|||-+.||+..+.+|.+..+..+.+++|.++- +. ......- .--..-.-.|+
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~-----------~e---edadYAi---kiln~VkLYgr 79 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFR-----------TE---EDADYAI---KILNMVKLYGR 79 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEe-----------ch---hhhHHHH---HHHHHHHhcCc
Confidence 5556688999999999999999999999998876666655432 10 0000000 00000001223
Q ss_pred CCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeE-EEEecCCC--CCceEEEEEeCCHHHHHHHHH-h
Q 013503 240 RRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN--SVLRFAFIEFTDEEGARAALN-L 315 (442)
Q Consensus 240 ~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~-V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-L 315 (442)
+..-.+.+..+..-.....|||+||.+.++|..|.+.|+.||.+.+ -.+++++. .++|||||.|++.|.+.+|+. +
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred eeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHh
Confidence 3221222211222334578999999999999999999999998765 35667766 368999999999999999999 9
Q ss_pred cCcccCCccEEEeccCCC
Q 013503 316 AGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 316 ng~~l~Gr~L~V~~s~~~ 333 (442)
+|+.+..++|.|.++...
T Consensus 160 ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKK 177 (203)
T ss_pred ccchhcCCceEEEEEEec
Confidence 999999999999997543
No 87
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=3.5e-10 Score=107.00 Aligned_cols=77 Identities=35% Similarity=0.522 Sum_probs=73.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..+|||+|||..+|+++|+++|.+ ||.|..+.+..+. +.++|||||+|.+.++|..|++ ++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 489999999999999999999998 9999999999985 7999999999999999999999 99999999999999976
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 88
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.11 E-value=8.3e-11 Score=109.21 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
.-.+|.|-||.+.+|.++|+.+|++||.|-+|.|..|+.+ ++|||||.|.+..+|+.|++ |+|.+|+|+.|.|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 5678999999999999999999999999999999999865 69999999999999999999 99999999999999875
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 89
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.09 E-value=4.7e-10 Score=84.02 Aligned_cols=55 Identities=29% Similarity=0.486 Sum_probs=50.0
Q ss_pred HHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 370 VKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 370 L~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
|+++|++ ||+|.++.+..+. +++|||+|.+.++|..|++ |||..++|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789998 9999999998665 5799999999999999999 9999999999999986
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=2e-10 Score=100.16 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=69.7
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCC--ceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~s--kG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
-|||.++...+|+++|.+.|..||+|.++.+.-|..+. +|||+|+|++.+.|++|++ +||..|.|.+|.|.|+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 39999999999999999999999999999999988764 9999999999999999999 9999999999999986
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.5e-10 Score=119.72 Aligned_cols=173 Identities=23% Similarity=0.311 Sum_probs=138.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcC-----------C-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGC-----------G-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLG 321 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~-----------G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~ 321 (442)
...+.++|+++|+.++++..-.+|..- | .+..+.+...++ +||++|.+.++|..|+.+++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~n----fa~ie~~s~~~at~~~~~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKN----FAFIEFRSISEATEAMALDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccccc----ceeEEecCCCchhhhhcccchhhC
Confidence 356779999999999999999999743 2 466777766554 999999999999999999999999
Q ss_pred CccEEEeccCCCCCCCCCC--------CCCCC-chhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--
Q 013503 322 FYPVRVLPSKTAIAPVNPT--------FLPRT-EDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-- 390 (442)
Q Consensus 322 Gr~L~V~~s~~~~~~~~p~--------~~p~~-~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-- 390 (442)
|.++++...........-. +.... ..........++|+|||..+++..++++.+. ||.+....+..+.
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhheeeccccc
Confidence 9999886643322111100 00000 0111334578999999999999999999997 9999999999886
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 391 HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 391 g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
|.++||||.+|.+..-...|+. |||..++++.|.|..|-..
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 5899999999999999999999 9999999999999987443
No 92
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=5.3e-10 Score=108.87 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=74.1
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
.+.+||||.-|+++++|.+|+..|+. ||.|+.|+|++|. |+++|||||+|++.-+...|.+ .+|..|.|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45689999999999999999999998 9999999999996 8999999999999999999999 999999999999988
Q ss_pred cCC
Q 013503 428 SKT 430 (442)
Q Consensus 428 Ak~ 430 (442)
-..
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 643
No 93
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4.7e-11 Score=108.90 Aligned_cols=76 Identities=25% Similarity=0.386 Sum_probs=72.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
+..|||+|||+++||.||.-+|++ ||+|.+|.+++|. |+++||||+.|++..+..-|+. |||..+.||.|+|..--
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 468999999999999999999998 9999999999997 7999999999999999999998 99999999999999853
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6.4e-10 Score=108.29 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=72.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
..-+||||+-|+++++|..|+..|+.||+|..|+|+.|+.+ ++|||||+|+++-+...|.+ .+|..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45789999999999999999999999999999999999754 79999999999999999999 9999999999999775
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 95
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2.6e-09 Score=108.81 Aligned_cols=119 Identities=23% Similarity=0.267 Sum_probs=91.0
Q ss_pred EeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCc
Q 013503 302 EFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 380 (442)
Q Consensus 302 eF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~ 380 (442)
...+.|+|.+||. -. |..|.|.-.........|.+. .......+-|||+.||.++.|+||.-+|++ .|+
T Consensus 40 ~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~we----g~~p~~G~EVfvGkIPrD~~EdeLvplfEk-iG~ 109 (506)
T KOG0117|consen 40 GVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWE----GPPPPRGCEVFVGKIPRDVFEDELVPLFEK-IGK 109 (506)
T ss_pred ccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCccc----CCCCCCCceEEecCCCccccchhhHHHHHh-ccc
Confidence 3345788888876 43 345566554443333333221 111234578999999999999999999998 899
Q ss_pred eEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCcee-CCeeEEEeecCC
Q 013503 381 VYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL-GSLPIRVSPSKT 430 (442)
Q Consensus 381 I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l-~Gr~L~V~~Ak~ 430 (442)
|-.++|++|+ |.+||||||.|.+.++|++|++ ||+.+| .|+.|.|+.+..
T Consensus 110 I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 110 IYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred eeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 9999999995 8999999999999999999999 999887 588888887644
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=5.4e-11 Score=108.48 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=75.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
-.++.-|||+|||++.||.+|.-.|++||+|++|.+++|+++ ++||||+.|++..+..-|+. |||..+.||.|+|.+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 346788999999999999999999999999999999999986 69999999999999999999 999999999999988
Q ss_pred cCCCC
Q 013503 330 SKTAI 334 (442)
Q Consensus 330 s~~~~ 334 (442)
.....
T Consensus 112 v~~Yk 116 (219)
T KOG0126|consen 112 VSNYK 116 (219)
T ss_pred ccccc
Confidence 64433
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.98 E-value=1.6e-09 Score=81.12 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=50.0
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 273 LAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 273 L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
|+++|++||+|.++.+..+. +++|||+|.+.++|+.|++ |||..+.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998766 4799999999999999999 9999999999999874
No 98
>smart00361 RRM_1 RNA recognition motif.
Probab=98.97 E-value=2.6e-09 Score=83.98 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=51.9
Q ss_pred HHHHHHHhh----hcCCceEEEE-EeccC----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 367 QADVKLFFE----SVCGEVYRLR-LLGDY----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 367 eedL~~~F~----~~fG~I~~v~-I~~d~----g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
+++|+++|+ + ||.|.++. ++.+. ++++|||||+|.+.++|.+|++ |||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 8 99999995 55543 6789999999999999999999 99999999999863
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=9.8e-10 Score=100.58 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=69.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||+|||.++.+.||+++|-+ ||.|..|.+....+ ..+||||+|+++.+|+.|+. -+|..+.|+.|+|+++...
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 478999999999999999999998 99999999854443 45699999999999999999 9999999999999998654
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=6.5e-10 Score=104.12 Aligned_cols=80 Identities=34% Similarity=0.437 Sum_probs=74.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...+||||++|..++||.-|...|-+||.|..|.++.|-.+ ++|||||+|...|+|..||. ||+..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 46899999999999999999999999999999999988643 69999999999999999999 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
++.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 653
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=1.6e-09 Score=112.93 Aligned_cols=77 Identities=22% Similarity=0.350 Sum_probs=73.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..|||+|+|+++++++|.++|+. .|.|.+++++.|. |+++||||++|.+.++|..|++ |||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 78999999999999999999998 8999999999987 7999999999999999999999 999999999999999865
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 98 ~ 98 (435)
T KOG0108|consen 98 R 98 (435)
T ss_pred c
Confidence 4
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=2.1e-09 Score=112.04 Aligned_cols=76 Identities=36% Similarity=0.513 Sum_probs=72.2
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
++|||||||+++++++|.++|+..|.|.++++..|+.+ .+||||++|.+.++|..|++ |||..+.|++|+|.+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999999999865 59999999999999999999 999999999999998643
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.90 E-value=1.2e-08 Score=105.34 Aligned_cols=171 Identities=23% Similarity=0.260 Sum_probs=126.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeE-EEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~-V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
....|.+++||+.+|++||.+||+..-.+.. |.+..+... +.|-|||+|++.+.|++|+..+...|+-+-|.|..+..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 5678999999999999999999997754444 556666543 68999999999999999999888888888888866421
Q ss_pred C-----C------CC----C------CC----------------------------------C---C----------CCC
Q 013503 333 A-----I------AP----V------NP----------------------------------T---F----------LPR 344 (442)
Q Consensus 333 ~-----~------~~----~------~p----------------------------------~---~----------~p~ 344 (442)
. . .. . .. . + .+.
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 0 0 00 0 00 0 0 000
Q ss_pred C-chhh----------hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH
Q 013503 345 T-EDER----------EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 345 ~-~~~~----------~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
. .... ......++.++||+..++.++.++|+. .....|.|-..+ ++.+|-|+|+|.+.++|..|+.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 0000 111256889999999999999999996 456677776655 7899999999999999999998
Q ss_pred hCCceeCCeeEEEee
Q 013503 413 CSGVVLGSLPIRVSP 427 (442)
Q Consensus 413 LnG~~l~Gr~L~V~~ 427 (442)
-++..+..+.|.+-.
T Consensus 340 kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 340 KDGANMGHRYVELFL 354 (510)
T ss_pred cCCcccCcceeeecc
Confidence 788888888776654
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=4e-10 Score=105.51 Aligned_cols=138 Identities=25% Similarity=0.338 Sum_probs=116.4
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...+||||.|+...++|+.|.++|-+-|+|..|.|..++.....||||.|.++.+..-|++ +||..+.++++++.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r-- 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR-- 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc--
Confidence 4678999999999999999999999999999999988876654599999999999999999 9999999999888763
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeC----CCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTN----IDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESA 407 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~N----Lp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A 407 (442)
.+| |...++++.+...|+. -|.+..+++..+. |..+.++|+.+-...+.
T Consensus 85 -------------------------~G~shapld~r~~~ei~~~v~s~-a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~ 138 (267)
T KOG4454|consen 85 -------------------------CGNSHAPLDERVTEEILYEVFSQ-AGPIEGVRIPTDNDGRNRNFGFVTYQRLCAV 138 (267)
T ss_pred -------------------------cCCCcchhhhhcchhhheeeecc-cCCCCCccccccccCCccCccchhhhhhhcC
Confidence 233 5567889999999997 7999999999876 67888999998877766
Q ss_pred HHHHH-hCCceeC
Q 013503 408 IAALN-CSGVVLG 419 (442)
Q Consensus 408 ~~Al~-LnG~~l~ 419 (442)
-.|+. ..+..+-
T Consensus 139 P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 139 PFALDLYQGLELF 151 (267)
T ss_pred cHHhhhhcccCcC
Confidence 67776 4444433
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=8.1e-09 Score=81.18 Aligned_cols=58 Identities=26% Similarity=0.281 Sum_probs=50.8
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 270 EEQLAALFV----GCGQVVDCR-ICGDP----NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 270 ee~L~elF~----~~G~I~~V~-i~~d~----~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
+++|+++|+ .||.|.+|. +..++ ..++|||||+|.+.++|.+|++ |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999995 55554 3469999999999999999999 9999999999976
No 106
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.80 E-value=9.5e-09 Score=104.43 Aligned_cols=77 Identities=26% Similarity=0.260 Sum_probs=72.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
+.+||+|||+++.+.||+++|.+.-|+|..|.++.|. ++++|+|.|||+++|.+++|++ ||.+.+.|++|.|+-...
T Consensus 45 R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 45 RSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred ceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 5699999999999999999998878999999999997 8999999999999999999999 999999999999987543
No 107
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=99.44 Aligned_cols=74 Identities=22% Similarity=0.393 Sum_probs=68.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
-+|||+|||..+++.+|+.+|++ ||+|..|.|+++ ||||..++...|..|+. |||..|.|.-|.|+-++...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 46999999999999999999998 999999999854 88999999999999998 99999999999999998874
Q ss_pred CC
Q 013503 433 RP 434 (442)
Q Consensus 433 ~p 434 (442)
.+
T Consensus 76 k~ 77 (346)
T KOG0109|consen 76 KA 77 (346)
T ss_pred CC
Confidence 44
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.71 E-value=3.3e-08 Score=93.39 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=70.4
Q ss_pred ceeeeeCCCCCCCHHHHHH----HhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 354 RTIYCTNIDKKVTQADVKL----FFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~----~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.||||.||+..+..++|+. +|++ ||+|..|...+. .+.+|-|||.|.+.+.|-.|+. |+|..+.|++++|.||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999998 9998 999999987644 3578999999999999999999 9999999999999999
Q ss_pred CCCC
Q 013503 429 KTPV 432 (442)
Q Consensus 429 k~~~ 432 (442)
+...
T Consensus 88 ~s~s 91 (221)
T KOG4206|consen 88 KSDS 91 (221)
T ss_pred cCcc
Confidence 8764
No 109
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=1.4e-09 Score=117.91 Aligned_cols=148 Identities=18% Similarity=0.150 Sum_probs=125.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEec--CCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICG--DPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~--d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
...++||+||+..+.+++|...|..+|.+..+++.. +.+..+|+||++|..++++.+|+.++...+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 345699999999999999999999999887776653 33445899999999999999999954444434
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al 411 (442)
...++|+|+|+..|.++++.++.. +|.+.+++++... |+++|.|+|.|.+..+|.+++
T Consensus 736 --------------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 736 --------------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred --------------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhhccccccceeccCCCcchhhhhc
Confidence 046899999999999999999998 9999999988776 899999999999999999999
Q ss_pred H-hCCceeCCeeEEEeecCCCCC
Q 013503 412 N-CSGVVLGSLPIRVSPSKTPVR 433 (442)
Q Consensus 412 ~-LnG~~l~Gr~L~V~~Ak~~~~ 433 (442)
. .++..+.-..+.|..+++++.
T Consensus 795 ~s~d~~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 795 ASVDVAGKRENNGEVQVSNPERD 817 (881)
T ss_pred ccchhhhhhhcCccccccCCccc
Confidence 8 888888888888888766443
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=9.5e-09 Score=112.08 Aligned_cols=162 Identities=17% Similarity=0.273 Sum_probs=134.3
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d-~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+....+|||++||+..+++.+|+..|..+|.|.+|.|... .++..-||||.|.+...+-.|.- +.+..|..-.+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3457889999999999999999999999999999998765 34456799999999999999986 888877655555555
Q ss_pred cCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHH
Q 013503 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 330 s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~ 409 (442)
... +....+.+++++|+..+....|...|.. ||.|..|.+- +..-||+|.|.+...|+.
T Consensus 448 G~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy~----hgq~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 448 GQP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDYR----HGQPYAYIQYESPPAAQA 506 (975)
T ss_pred ccc----------------ccccceeeccCCCCCCChHHHHHHHhhc-cCcceeeecc----cCCcceeeecccCccchh
Confidence 421 1123367999999999999999999998 9999998774 334499999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeecCCCCCC
Q 013503 410 ALN-CSGVVLGS--LPIRVSPSKTPVRP 434 (442)
Q Consensus 410 Al~-LnG~~l~G--r~L~V~~Ak~~~~p 434 (442)
|+. |-|..|+| +.|+|.++.++-.+
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCCCCC
Confidence 999 99999987 68999999776544
No 111
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.69 E-value=6.5e-08 Score=97.03 Aligned_cols=230 Identities=17% Similarity=0.145 Sum_probs=134.0
Q ss_pred CCCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCCCC
Q 013503 158 GGGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQ 237 (442)
Q Consensus 158 ~~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~~~ 237 (442)
++++|.++++.|.+-|++||.+.+..+=.+.++...-+++|. -|.-+..... .-. .+...-.
T Consensus 12 Ggisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv-----~f~~~~~v~~--------vl~-----~~~h~~d 73 (311)
T KOG4205|consen 12 GGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFV-----TFATPEGVDA--------VLN-----ARTHKLD 73 (311)
T ss_pred cCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccce-----ecCCCcchhe--------eec-----ccccccC
Confidence 458999999999999999999988666555554331112222 1211100000 000 0001111
Q ss_pred CCCCCCCccc-hhhhhc----cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHH
Q 013503 238 GKRRMNSRTS-LAQREE----IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGAR 310 (442)
Q Consensus 238 g~~~~~~r~~-~~~~~~----~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~ 310 (442)
|+..-.-+.. +.+... ...+.|||++||.+++++++++.|.+||.|..+-++.|..+ ++||+||.|.++++++
T Consensus 74 gr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 74 GRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred CccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 1111111100 001111 13568999999999999999999999999999999988765 5999999999999999
Q ss_pred HHHHhcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEE----
Q 013503 311 AALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL---- 386 (442)
Q Consensus 311 kAl~Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I---- 386 (442)
+++...-+.|.|+++.|..+........... ......+..|+....+.-.|..+|.- ||.+.....
T Consensus 154 kv~~~~f~~~~gk~vevkrA~pk~~~~~~~~---------~~~~~~~~~~~g~~~~~~~l~~~~~g-~~~~~~~~~~~~~ 223 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVKRAIPKEVMQSTKS---------SVSTRGKGNNLGNGRTGFFLKKYFKG-YGPVGMSDYGGRP 223 (311)
T ss_pred eecccceeeecCceeeEeeccchhhcccccc---------ccccccccccccccccccccchhccc-cCccccccccccc
Confidence 9999999999999999988743211111000 00001111133333333344444543 444331100
Q ss_pred ---eccCCCcceEEEEEeCCHHHHHHHHH-hCC
Q 013503 387 ---LGDYHHSTRIAFVEFVMAESAIAALN-CSG 415 (442)
Q Consensus 387 ---~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG 415 (442)
........|.+|..|.+......+.. +++
T Consensus 224 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 224 VGRRYGPLFNGGSGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred cccccccccCCCccccccCccccccccccccCC
Confidence 00001356789999987777766665 555
No 112
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.69 E-value=1.8e-08 Score=100.30 Aligned_cols=173 Identities=23% Similarity=0.230 Sum_probs=134.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC--CCCCceEEEEEeCCHHHHHHHHHhcCc-ccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD--PNSVLRFAFIEFTDEEGARAALNLAGT-MLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d--~~~skG~AFVeF~s~e~A~kAl~Lng~-~l~Gr~L~V~~s 330 (442)
....+.|++++...+.+.++..++..+|....+.+... ...++|++++.|...+.+..|+.+.+. .+.+..+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46788999999999999999999999997777766553 334689999999999999999997664 555555544333
Q ss_pred CCCCC-CCCCCCCCCCchhhhcccceee-eeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHH
Q 013503 331 KTAIA-PVNPTFLPRTEDEREMCARTIY-CTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAES 406 (442)
Q Consensus 331 ~~~~~-~~~p~~~p~~~~~~~~~~~tL~-V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~ 406 (442)
..-.. +.++ .. ........+++ +.|++..+++++|+..|.. +|.|..++++.+. +..+|||+|.|.+...
T Consensus 166 ~~~~~~~~n~----~~-~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 166 TRRGLRPKNK----LS-RLSSGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred ccccccccch----hc-ccccCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 22110 0110 00 01122335566 9999999999999999997 9999999999876 6899999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEeecCCCC
Q 013503 407 AIAALNCSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 407 A~~Al~LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+..|+..+...+.++++.+.+..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 240 KKLALNDQTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred HHHHhhcccCcccCcccccccCCCCc
Confidence 99998777789999999999987654
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=6.5e-08 Score=96.18 Aligned_cols=79 Identities=20% Similarity=0.375 Sum_probs=71.2
Q ss_pred hhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH--hcCcccCCccEEE
Q 013503 250 QREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN--LAGTMLGFYPVRV 327 (442)
Q Consensus 250 ~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~--Lng~~l~Gr~L~V 327 (442)
..++...++|||++|-..++|.+|+++|.+||+|.++.+.... ++|||+|.+.++|+.|.+ ++...+.|+.|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3456678899999999999999999999999999999998765 599999999999999987 8888899999999
Q ss_pred eccCC
Q 013503 328 LPSKT 332 (442)
Q Consensus 328 ~~s~~ 332 (442)
.|++.
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99865
No 114
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=5.2e-08 Score=93.84 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=76.2
Q ss_pred hhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccE
Q 013503 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPV 325 (442)
Q Consensus 249 ~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L 325 (442)
.+++..+.|+|||-.||.+..+.+|...|-.||.|.+.++..|+.+ +++|+||.|.++.+|+.||. |||..|+-++|
T Consensus 278 qqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 278 QQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred hhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 3566678999999999999999999999999999999999998855 79999999999999999999 99999999999
Q ss_pred EEeccC
Q 013503 326 RVLPSK 331 (442)
Q Consensus 326 ~V~~s~ 331 (442)
+|...+
T Consensus 358 KVQLKR 363 (371)
T KOG0146|consen 358 KVQLKR 363 (371)
T ss_pred hhhhcC
Confidence 998753
No 115
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=9.5e-08 Score=95.01 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=68.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH--hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN--CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~--LnG~~l~Gr~L~V~~Ak 429 (442)
...+|||++|...+++.||++.|.+ ||+|.++++... ++.|||+|.+.++|+.|.+ +|...+.|++|+|.|+.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 3479999999999999999999998 999999999854 4599999999999999997 78899999999999998
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.58 E-value=8.3e-08 Score=103.46 Aligned_cols=77 Identities=29% Similarity=0.457 Sum_probs=71.7
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..+++||+|++|+..+++.||.++|++ ||+|.+|.++ .++|+|||.+....+|.+|+. |+...+.++.|+|.|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILI----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHh-cccceeEeec----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 567899999999999999999999998 9999999997 567799999999999999998 9999999999999998
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 654
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.2e-08 Score=95.94 Aligned_cols=78 Identities=22% Similarity=0.350 Sum_probs=72.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
+.+.|||.-|.+-+|.+||.-+|+. ||+|.+|.+++|. |.+..||||+|++.+++++|.= |++..|.++.|+|.|+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3478999999999999999999998 9999999999996 6788899999999999999996 9999999999999998
Q ss_pred CC
Q 013503 429 KT 430 (442)
Q Consensus 429 k~ 430 (442)
+.
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 64
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.55 E-value=2.1e-07 Score=100.38 Aligned_cols=109 Identities=22% Similarity=0.311 Sum_probs=82.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++||||+.|+..+++.+|..+|+.||.|.+|.++... |+|||.+....+|.+|+. |+...+.++.|+|.|+-.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 358899999999999999999999999999999998654 699999999999999998 999999999999999732
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
.. ++. +-+......+-|+-||.+--..|++.+++
T Consensus 495 ~G--------~ks-e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KG--------PKS-EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CC--------cch-hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 11 111 11111112345666777633334666665
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1e-07 Score=94.88 Aligned_cols=77 Identities=25% Similarity=0.484 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....|||.-|.+-+|+++|.-+|+.||.|.+|.+++|..+ +..||||+|.+.+++++|.= |++..|..+.|.|.++.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 5778999999999999999999999999999999999876 58999999999999999986 99999999999998864
No 120
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.53 E-value=5.8e-07 Score=96.20 Aligned_cols=90 Identities=22% Similarity=0.352 Sum_probs=76.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-----~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
...++|||+||++.++++.|...|..||+|.+++++-.+. ..+-+|||.|.+..+|++|++ |+|..+.+.++++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 3688899999999999999999999999999999975432 236799999999999999999 9999999999999
Q ss_pred eccCCCCCCCCCCCCC
Q 013503 328 LPSKTAIAPVNPTFLP 343 (442)
Q Consensus 328 ~~s~~~~~~~~p~~~p 343 (442)
.|++....+..+.+.|
T Consensus 252 gWgk~V~ip~~p~~ip 267 (877)
T KOG0151|consen 252 GWGKAVPIPNIPIYIP 267 (877)
T ss_pred ccccccccCCccccCC
Confidence 9987665555444433
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.50 E-value=4e-07 Score=91.57 Aligned_cols=166 Identities=22% Similarity=0.229 Sum_probs=117.1
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDP-NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~-V~i~~d~-~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
+...|..++||+..++.+|..+|+......- +-++... ....|.|.|.|.+.|.-+-|++-+...++++.|.|-.+..
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCc
Confidence 4566889999999999999999985421111 1112111 2235899999999999999999888889999999876532
Q ss_pred CC----C----CCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcC---CceEEEEEecc-CCCcceEEEEE
Q 013503 333 AI----A----PVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVC---GEVYRLRLLGD-YHHSTRIAFVE 400 (442)
Q Consensus 333 ~~----~----~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~f---G~I~~v~I~~d-~g~~rG~AFVe 400 (442)
.. . ...+.|.++. ..-.|.+++||+++++.|+.++|.+.| |....|-+++. .|+.+|-|||.
T Consensus 139 e~f~~iagg~s~e~~~flsk~------~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvl 212 (508)
T KOG1365|consen 139 EEFLKIAGGTSNEAAPFLSKE------NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVL 212 (508)
T ss_pred hhheEecCCccccCCCCCCcc------cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEE
Confidence 11 0 1111122211 124678899999999999999996322 34455555554 58999999999
Q ss_pred eCCHHHHHHHHHhCCceeCCeeEEEe
Q 013503 401 FVMAESAIAALNCSGVVLGSLPIRVS 426 (442)
Q Consensus 401 F~s~e~A~~Al~LnG~~l~Gr~L~V~ 426 (442)
|..+++|+.|+..|...++-|.|.+-
T Consensus 213 fa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 213 FACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999866666666665543
No 122
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=9.9e-08 Score=91.44 Aligned_cols=164 Identities=20% Similarity=0.286 Sum_probs=123.3
Q ss_pred CcEEEEEcCCCcChHHH-H--HHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 256 RRTVYVSDIDQQVTEEQ-L--AALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~-L--~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
--..+++++-..+..+- | ...|+.+-.....++..+..+ -.+++|+.|.....-.++-. -+++.++-.+|++...
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 33466777766655554 3 667777766666666666544 47899999998888888776 6777777666665543
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~ 408 (442)
..-..+ ...+.....-+||++.|.-+++.+-|-..|.+ |-.....++++|. |+++||+||.|.+..++.
T Consensus 176 tswedP--------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 176 TSWEDP--------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred cccCCc--------ccccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHH
Confidence 211111 11112233468999999999999999999998 8888888999987 799999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeec
Q 013503 409 AALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.|+. |+|..++.++|++..+
T Consensus 247 rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHhhcccccccchhHhhhh
Confidence 9998 9999999999988765
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.48 E-value=7.8e-08 Score=96.76 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=126.3
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-----VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-----skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
...|.|.||.+.+|.++++.+|...|.|..++++..... ....|||.|.+...+..|..|.++++-++.|.|.+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347999999999999999999999999999999884432 367999999999999999999999999998888764
Q ss_pred CCCCCCC-------------------C----------------------CCCCCCCc-hhhhcccceeeeeCCCCCCCHH
Q 013503 331 KTAIAPV-------------------N----------------------PTFLPRTE-DEREMCARTIYCTNIDKKVTQA 368 (442)
Q Consensus 331 ~~~~~~~-------------------~----------------------p~~~p~~~-~~~~~~~~tL~V~NLp~~vTee 368 (442)
-....+. + |...|... ...++..++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 3211110 0 00000000 0113445799999999999999
Q ss_pred HHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEE
Q 013503 369 DVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 424 (442)
Q Consensus 369 dL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~ 424 (442)
++.+.|.. +|+|....+.-... .-+|-++|....+...|+.++|..+.-+...
T Consensus 167 e~~e~f~r-~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr~~gre~k~qhsr 219 (479)
T KOG4676|consen 167 ESGESFER-KGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALRSHGRERKRQHSR 219 (479)
T ss_pred hhhhhhhh-cchhhhhhhhccCC--CcchhhhHhhhhhHHHHHHhcchhhhhhhhh
Confidence 99999998 89999887754332 3377899999999999999888877744333
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.46 E-value=4.2e-07 Score=84.86 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=69.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcC-CCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~-G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
......+||..+|..+.+.++..+|.++ |.+..+++.+.+.+ ++|||||+|++++.|.-|-+ ||+..|.|+-|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456679999999999999999999988 78888888777654 69999999999999999999 99999999999887
Q ss_pred cc
Q 013503 329 PS 330 (442)
Q Consensus 329 ~s 330 (442)
.-
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 74
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.43 E-value=5.7e-07 Score=87.13 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=73.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+|+|.|||+.++++||+++|.+ ||.+..+-+..+. |.+.|.|-|.|...++|.+|++ ++|..+.|++|++....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 368999999999999999999998 9999999999887 7899999999999999999999 999999999999998755
Q ss_pred CC
Q 013503 431 PV 432 (442)
Q Consensus 431 ~~ 432 (442)
+.
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 53
No 126
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.42 E-value=5.3e-07 Score=84.21 Aligned_cols=79 Identities=23% Similarity=0.285 Sum_probs=70.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
...+|+..+|..+-+.++..+|.+..|.|..+++.++. |.++|||||+|++.+.|.-|-+ ||+..|.|+.|.+.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 46789999999999999999999833789999998876 8999999999999999999999 99999999999988754
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 43
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.36 E-value=8.9e-07 Score=92.70 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=74.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCC--ceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSV--LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~s--kG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
....++|||.+|+..+.-.+|+.+|++||.|+-.+++.+..++ ++|+||++.+.++|.+||+ |+.+.|+|+-|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 3468899999999999999999999999999999999876553 8999999999999999999 999999999999998
Q ss_pred cCCCC
Q 013503 330 SKTAI 334 (442)
Q Consensus 330 s~~~~ 334 (442)
++..+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 76543
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.35 E-value=8.9e-07 Score=92.72 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=74.9
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
..+.++|+|.+|...+...||+.+|++ ||+|+-.+++.+. -..++|+||++.+.++|.+||+ |+-+.|.|+.|.|.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 445689999999999999999999999 9999999999875 2478999999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 013503 427 PSKTPVR 433 (442)
Q Consensus 427 ~Ak~~~~ 433 (442)
.++.-+.
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9976543
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.32 E-value=7.4e-07 Score=93.49 Aligned_cols=171 Identities=16% Similarity=0.185 Sum_probs=114.8
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..+...++|+|-|||..+++++|+.+|+.||+|..|+.-+.+. |.+||+|-|.-+|+.|++ |++..+.|+.|+...
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~---~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR---GIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC---ceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 3356789999999999999999999999999999977665544 899999999999999999 999999999998222
Q ss_pred cCCCC-CC-CCCCCCCC-----Cchhhhcc-cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEe
Q 013503 330 SKTAI-AP-VNPTFLPR-----TEDEREMC-ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 401 (442)
Q Consensus 330 s~~~~-~~-~~p~~~p~-----~~~~~~~~-~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF 401 (442)
..... .. ....+... ........ ...++ ..|++..+..-++..|. ++|.+.. +.....++ .-|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~-~~~~~~~-~~~~~~~h---q~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISS-VDGSSPG-RETPLLNH---QRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchh-ccCcccc-ccccchhh---hhhhhh
Confidence 11000 00 00000000 00000011 12233 33888888866677776 4887776 43322222 457888
Q ss_pred CCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 402 VMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 402 ~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
.+..++..+..-.|..+.+....+.++.+
T Consensus 221 ~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 221 ADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred ccccchhhcccCCceecCCCCceEEecCC
Confidence 88888866665227888888777777655
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.24 E-value=1.9e-06 Score=92.17 Aligned_cols=174 Identities=13% Similarity=0.020 Sum_probs=127.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CC-ceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SV-LRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~s-kG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
.+.+.+-+++.++++++.+++++|... .|....+..+.- .+ .|-++|+|....++++|+.-+...+-.|.+.+.+..
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 466778889999999999999999744 344444444332 22 689999999999999999988889999999998753
Q ss_pred CCCCCCCCC------------------CCCCCchh-------hhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEE
Q 013503 332 TAIAPVNPT------------------FLPRTEDE-------REMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRL 386 (442)
Q Consensus 332 ~~~~~~~p~------------------~~p~~~~~-------~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I 386 (442)
.......+. ..++.... .......|||..||..+++.++.++|...+-.+..|.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 211111110 01111100 01234689999999999999999999985444444777
Q ss_pred eccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 387 LGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 387 ~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.+.. ++.++.|||+|..++++..|.. -+.+.++.+.|+|...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 6654 6788899999999999999998 6778888899999764
No 131
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.24 E-value=1.7e-06 Score=83.76 Aligned_cols=81 Identities=31% Similarity=0.445 Sum_probs=74.3
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
....+.+||+|+.+.+|.+++...|+. ||.|..+.++.|. ++++|||||+|.+.+.+++|+.|+|..+.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 344578999999999999999999997 9999999999987 5799999999999999999999999999999999999
Q ss_pred cCCC
Q 013503 428 SKTP 431 (442)
Q Consensus 428 Ak~~ 431 (442)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7665
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.22 E-value=3.5e-06 Score=81.74 Aligned_cols=79 Identities=23% Similarity=0.286 Sum_probs=71.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
+.....|+|.|||+.+++++|+++|..||.+..+-+..++.+ +.|.|-|.|...++|..|++ ++|..++|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 344577999999999999999999999999999999888875 68999999999999999999 9999999999988764
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 3
No 133
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.20 E-value=2.1e-06 Score=89.36 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~--~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
...+|||+|||++++..+|+++|..||.|....|.... ....+||||+|.+.++++.|+..+...+++++|.|..-+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 34449999999999999999999999999988776543 2233899999999999999999778889999999987543
No 134
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.17 E-value=3e-06 Score=81.95 Aligned_cols=83 Identities=24% Similarity=0.348 Sum_probs=75.5
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
..+.+.+.+||+|+.+.+|.+++...|+.||.|..+.+..|... ++|||||+|.+.+.++.|+.|++..+.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 44567889999999999999999999999999998989888754 6999999999999999999999999999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87654
No 135
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.17 E-value=4.1e-06 Score=87.24 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=69.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.+|||+|||.+++..+|+++|.+ ||.|+...|.... ++..+||||+|.+.+++..|++-+-..+++++|.|+--++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 45999999999999999999998 9999999887754 44449999999999999999997899999999999987664
Q ss_pred C
Q 013503 432 V 432 (442)
Q Consensus 432 ~ 432 (442)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 136
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.15 E-value=4.8e-06 Score=83.08 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=70.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 422 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~--------~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~ 422 (442)
...|||+|||.++|.+++.++|++ ||.|. .|+|.++. |+.+|-|.+.|-..++..-|++ |++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356999999999999999999998 99775 57888876 8999999999999999999999 9999999999
Q ss_pred EEEeecCC
Q 013503 423 IRVSPSKT 430 (442)
Q Consensus 423 L~V~~Ak~ 430 (442)
|+|+.|+-
T Consensus 213 ~rVerAkf 220 (382)
T KOG1548|consen 213 LRVERAKF 220 (382)
T ss_pred EEEehhhh
Confidence 99999853
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=2.5e-06 Score=89.58 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=66.5
Q ss_pred CchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeE
Q 013503 345 TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 423 (442)
Q Consensus 345 ~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L 423 (442)
.+.++....++|.|-|||..+++++|+.+|+. ||+|..|+.-+ ..+|..||+|-+..+|+.|++ |++.++.|+.|
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t~---~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRETP---NKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhccc---ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 34445566789999999999999999999997 99999976644 356799999999999999999 99999999999
Q ss_pred E
Q 013503 424 R 424 (442)
Q Consensus 424 ~ 424 (442)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 8
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.09 E-value=9.2e-06 Score=87.29 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeE
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 423 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-----g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L 423 (442)
....+++||.||++.++++.|...|+. ||+|.+++|+-.. ...+.+|||-|.+..+|++|++ |+|..+.+..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 344578999999999999999999998 9999999987543 2456699999999999999999 99999999999
Q ss_pred EEeecCCCC
Q 013503 424 RVSPSKTPV 432 (442)
Q Consensus 424 ~V~~Ak~~~ 432 (442)
++.|+++-+
T Consensus 250 K~gWgk~V~ 258 (877)
T KOG0151|consen 250 KLGWGKAVP 258 (877)
T ss_pred eeccccccc
Confidence 999996543
No 139
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.08 E-value=1.4e-05 Score=75.57 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEec-cCC--CcceEEEEEeCCHHHHHHHHH-hCCceeC---CeeEE
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLG-DYH--HSTRIAFVEFVMAESAIAALN-CSGVVLG---SLPIR 424 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~-d~g--~~rG~AFVeF~s~e~A~~Al~-LnG~~l~---Gr~L~ 424 (442)
..+||||.+||.++...+|+.+|.. |-.-+...|.. +++ ..+-+||+.|.+..+|..|++ |||..|+ +..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~-f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRR-FHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhcc-CCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 3589999999999999999999998 54444444432 222 345699999999999999999 9999886 67899
Q ss_pred EeecCCCC
Q 013503 425 VSPSKTPV 432 (442)
Q Consensus 425 V~~Ak~~~ 432 (442)
|++|+...
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99987653
No 140
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.08 E-value=4.8e-07 Score=91.94 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=116.2
Q ss_pred EEEEEcCCCcChHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcc-cCCccEEEeccCCC
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVLPSKTA 333 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~--G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~-l~Gr~L~V~~s~~~ 333 (442)
.+|++||.+.++..+|..+|... |.-..+.+ ..||+||.+.+..-|.+|++ ++|+. +.|+++.+..+-
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv-- 74 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV-- 74 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh--
Confidence 58999999999999999999854 11111111 13899999999999999999 88865 889999998862
Q ss_pred CCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-
Q 013503 334 IAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN- 412 (442)
Q Consensus 334 ~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~- 412 (442)
+.. ..++.+-|+|+|+...++.|..+... ||.+..|....... .+-..-|+|.+.+.+..|+.
T Consensus 75 ---------~kk-----qrsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~~-etavvnvty~~~~~~~~ai~k 138 (584)
T KOG2193|consen 75 ---------PKK-----QRSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTDS-ETAVVNVTYSAQQQHRQAIHK 138 (584)
T ss_pred ---------hHH-----HHhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccch-HHHHHHHHHHHHHHHHHHHHh
Confidence 111 12367999999999999999999998 99999997643221 11123478999999999999
Q ss_pred hCCceeCCeeEEEeec
Q 013503 413 CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 413 LnG~~l~Gr~L~V~~A 428 (442)
++|..+....++|.|-
T Consensus 139 l~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 139 LNGPQLENQHLKVGYI 154 (584)
T ss_pred hcchHhhhhhhhcccC
Confidence 9999999999999984
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.06 E-value=2.2e-05 Score=65.95 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcC--CCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccC----CccEE
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG----FYPVR 326 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~--G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~----Gr~L~ 326 (442)
++||.|+|||...|.++|.+++... |...-+.++.|..+ +.|||||.|.+.+.|.+..+ ++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 4789999999999999999998743 67777788877654 69999999999999999998 9998874 34445
Q ss_pred Eecc
Q 013503 327 VLPS 330 (442)
Q Consensus 327 V~~s 330 (442)
|.++
T Consensus 81 i~yA 84 (97)
T PF04059_consen 81 ISYA 84 (97)
T ss_pred Eehh
Confidence 6555
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.01 E-value=3.3e-05 Score=64.91 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=64.4
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcC-CceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeC----CeeEEE
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVC-GEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLG----SLPIRV 425 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~f-G~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~----Gr~L~V 425 (442)
+||.|+|||...|.++|.+++...| |....+.++.|. +...|||||.|.+++.|.+-.+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 6899999999999999999887533 577888888885 5789999999999999999998 9997775 456777
Q ss_pred eecC
Q 013503 426 SPSK 429 (442)
Q Consensus 426 ~~Ak 429 (442)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.96 E-value=6.9e-06 Score=78.98 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=73.0
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
.++.++..||+++|..+++++.|...|.+|-.....++++|+.+ ++||+||.|.+..++..|+. |+|..++.++|.+
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 34567888999999999999999999999988888888888765 69999999999999999998 9999999999998
Q ss_pred eccC
Q 013503 328 LPSK 331 (442)
Q Consensus 328 ~~s~ 331 (442)
..+.
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 8764
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=4.8e-06 Score=78.54 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=67.4
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
+||||.|+...++++-|.++|-+ -|.|..|.|+.+. +..+ ||||+|.++.+..-|++ +||..+.+..++|.+-
T Consensus 10 rtl~v~n~~~~v~eelL~Elfiq-aGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQ-AGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhc-cCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 79999999999999999999998 7999999999887 4555 99999999999999999 9999999999988774
No 145
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=1.2e-05 Score=76.51 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=64.7
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+||++||+.+.+.||..+|.. ||.+..+.+. .||+||+|.+..+|..|+. +|+..|+|..+.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 36899999999999999999998 9999999884 4588999999999999998 999999999999999984
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.85 E-value=7e-05 Score=60.84 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=47.3
Q ss_pred ceeeeeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 354 RTIYCTNIDKKVTQAD----VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 354 ~tL~V~NLp~~vTeed----L~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
..|+|.|||.+.+... |++++.. || +|..|. .+.|+|.|.+.+.|.+|.+ |+|..+.|.+|.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdN-CGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDN-CGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHT-TT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhc-cCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 5699999999888765 4567776 87 777772 3579999999999999999 999999999999999
Q ss_pred cC
Q 013503 428 SK 429 (442)
Q Consensus 428 Ak 429 (442)
..
T Consensus 74 ~~ 75 (90)
T PF11608_consen 74 SP 75 (90)
T ss_dssp S-
T ss_pred cC
Confidence 83
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.81 E-value=2.4e-06 Score=93.36 Aligned_cols=160 Identities=18% Similarity=0.145 Sum_probs=121.6
Q ss_pred CCcEEEEEcCCCcChHH-HHHHHhhcCCCeeEEEEec-CCCCC-ceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEE-QLAALFVGCGQVVDCRICG-DPNSV-LRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee-~L~elF~~~G~I~~V~i~~-d~~~s-kG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
..+...+.|+.+...+. ..+..|..+|.|+.|++.. ..+.+ ..++++.+....+++.|....+..+.++.+.|..+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCC
Confidence 45568888998877665 6788899999999999876 22222 338999999999999999988888999988888875
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEe--ccCCCcceEEEEEeCCHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLL--GDYHHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~--~d~g~~rG~AFVeF~s~e~A~~ 409 (442)
.......+...+... ....++|++||+..+.++||...|.+ +|.+..+++. .+.+..+|+||++|..+++|.+
T Consensus 650 ~~~~~~~~kvs~n~~----R~~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEI----RDLIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred chhhhhccCcCchHH----HHHHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 443322222222211 12358999999999999999999998 8977777665 4457899999999999999999
Q ss_pred HHHh-CCceeC
Q 013503 410 ALNC-SGVVLG 419 (442)
Q Consensus 410 Al~L-nG~~l~ 419 (442)
|+.+ .+..++
T Consensus 725 aV~f~d~~~~g 735 (881)
T KOG0128|consen 725 AVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhh
Confidence 9984 444443
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00043 Score=56.35 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=46.7
Q ss_pred cEEEEEcCCCcChHHH----HHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 257 RTVYVSDIDQQVTEEQ----LAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~----L~elF~~~G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
..|+|.|||.+.+... |+.++..|| .|.+|. .+.|+|.|.+.+.|++|.+ |+|..+.|.+|.|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 4699999999887765 456777886 666652 1589999999999999999 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.49 E-value=0.00033 Score=59.72 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=42.8
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h--C---CceeCCeeEEEe
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--S---GVVLGSLPIRVS 426 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-L--n---G~~l~Gr~L~V~ 426 (442)
..|+|.+++..++.++|++.|++ ||.|..|.+..... .|+|.|.+.++|+.|++ + . +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 35889999999999999999998 99999998875443 79999999999999997 3 3 456666666554
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.39 E-value=0.00079 Score=57.40 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=42.6
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcC-----cccCCccEEEe
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG-----TMLGFYPVRVL 328 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng-----~~l~Gr~L~V~ 328 (442)
+.|+|.+++..++-++|++.|+.||.|..|.+..... .|||.|.++++|+.|++ +.. ..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4689999999999999999999999999988877554 89999999999999998 433 33455555444
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.38 E-value=0.0022 Score=69.34 Aligned_cols=73 Identities=22% Similarity=0.207 Sum_probs=61.6
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCe-eEEEEec-CCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICG-DPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I-~~V~i~~-d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
.+.|-+.|+|++++-+||.+||..|-.+ .+|++.. |+...+|-|.|.|++.++|..|.. ++++.|..+.|.+.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4589999999999999999999999644 3455554 445578999999999999999988 99999999988775
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.22 E-value=0.00094 Score=49.84 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=42.9
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL 313 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl 313 (442)
+.|-|.+.+++..+. +...|..||+|..+.+.... ...||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 578899999886654 55588899999998887433 38999999999999985
No 153
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.01 E-value=0.0026 Score=64.20 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=69.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 321 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~--------~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~ 321 (442)
....-+|||-+||..+++++|.++|.+||.|. .|.+.+|+.+ ++|-|.|.|.+...|+.|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44677899999999999999999999999874 3566677765 69999999999999999999 9999999
Q ss_pred CccEEEeccC
Q 013503 322 FYPVRVLPSK 331 (442)
Q Consensus 322 Gr~L~V~~s~ 331 (442)
|.+|+|..+.
T Consensus 143 gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 GNTIKVSLAE 152 (351)
T ss_pred CCCchhhhhh
Confidence 9999998764
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.92 E-value=0.00082 Score=67.77 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=67.7
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 422 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~--------~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~ 422 (442)
.+|||.+||..+++.+|.++|.+ ||.|. .|.|.++. +.++|-|.|.|++...|+.|+. +++..+.|.+
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred ccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 58999999999999999999997 99875 34444554 5799999999999999999999 9999999999
Q ss_pred EEEeecCCC
Q 013503 423 IRVSPSKTP 431 (442)
Q Consensus 423 L~V~~Ak~~ 431 (442)
|+|..+...
T Consensus 146 ikvs~a~~r 154 (351)
T KOG1995|consen 146 IKVSLAERR 154 (351)
T ss_pred chhhhhhhc
Confidence 999998654
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.87 E-value=0.0018 Score=62.73 Aligned_cols=101 Identities=25% Similarity=0.269 Sum_probs=81.3
Q ss_pred HHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEE
Q 013503 307 EGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR 385 (442)
Q Consensus 307 e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~ 385 (442)
.-|+.|.. |++....|+.+.|.++. . ..|||.||...++.+.+.+.|+. ||+|....
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~--------------------~-a~l~V~nl~~~~sndll~~~f~~-fg~~e~av 62 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM--------------------H-AELYVVNLMQGASNDLLEQAFRR-FGPIERAV 62 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec--------------------c-ceEEEEecchhhhhHHHHHhhhh-cCccchhe
Confidence 34666766 99999999999999962 1 46999999999999999999997 99998877
Q ss_pred EeccC-CCcceEEEEEeCCHHHHHHHHH-hC--C--ceeCCeeEEEeecC
Q 013503 386 LLGDY-HHSTRIAFVEFVMAESAIAALN-CS--G--VVLGSLPIRVSPSK 429 (442)
Q Consensus 386 I~~d~-g~~rG~AFVeF~s~e~A~~Al~-Ln--G--~~l~Gr~L~V~~Ak 429 (442)
+..|. +++.+-++|+|...-.|.+|+. ++ | ....+++.-|.+..
T Consensus 63 ~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e 112 (275)
T KOG0115|consen 63 AKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME 112 (275)
T ss_pred eeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence 77665 7899999999999999999997 52 2 34455666665543
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.86 E-value=0.0023 Score=47.72 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=42.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
+.|-|.|.+++.. +++...|.. ||+|..+.+.. ...+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~-fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFAS-FGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHh-cCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 5788999998765 456668887 99999998862 2338999999999999995
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.80 E-value=0.0025 Score=63.76 Aligned_cols=76 Identities=17% Similarity=0.360 Sum_probs=62.1
Q ss_pred ceeeeeCCCCCCCHHHH------HHHhhhcCCceEEEEEeccC---CCcceEE--EEEeCCHHHHHHHHH-hCCceeCCe
Q 013503 354 RTIYCTNIDKKVTQADV------KLFFESVCGEVYRLRLLGDY---HHSTRIA--FVEFVMAESAIAALN-CSGVVLGSL 421 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL------~~~F~~~fG~I~~v~I~~d~---g~~rG~A--FVeF~s~e~A~~Al~-LnG~~l~Gr 421 (442)
.-+||-+||+.+..|++ .++|++ ||+|..|.+-+.. +...+.+ ||+|.+.|+|.+|+. .+|..+.|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 56899999998877773 469998 9999999887643 2222223 999999999999998 999999999
Q ss_pred eEEEeecCC
Q 013503 422 PIRVSPSKT 430 (442)
Q Consensus 422 ~L~V~~Ak~ 430 (442)
.|+..+..+
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998754
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.79 E-value=0.007 Score=51.20 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEe-cC-------C-CCCceEEEEEeCCHHHHHHHHHhcCcccCCccE
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRIC-GD-------P-NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 325 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~-~d-------~-~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L 325 (442)
..+.|.|-+.|+. ....|.+.|++||.|.+..-. ++ + ........|.|.++.+|.+||..||..+.|.-+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4667999999998 445666889999999877511 00 0 012358999999999999999999999988644
Q ss_pred -EEecc
Q 013503 326 -RVLPS 330 (442)
Q Consensus 326 -~V~~s 330 (442)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46664
No 159
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.78 E-value=0.007 Score=51.19 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=52.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEE-Eecc-------C-CCcceEEEEEeCCHHHHHHHHHhCCceeCCe-eE
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGD-------Y-HHSTRIAFVEFVMAESAIAALNCSGVVLGSL-PI 423 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~-I~~d-------~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr-~L 423 (442)
+.|.|-+.|+. ....|.+.|++ ||.|.+.. +.++ + .....+-.|+|.++.+|.+||..||..+.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 67899999988 56678889998 99998775 1111 0 1233489999999999999999999999885 55
Q ss_pred EEeecCC
Q 013503 424 RVSPSKT 430 (442)
Q Consensus 424 ~V~~Ak~ 430 (442)
-|.+.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 5777643
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.59 E-value=0.0043 Score=63.97 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=54.7
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---C----CC--------cceEEEEEeCCHHHHHHHHH-h
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---Y----HH--------STRIAFVEFVMAESAIAALN-C 413 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d---~----g~--------~rG~AFVeF~s~e~A~~Al~-L 413 (442)
+..+++|.+.|||.+-.-+.|.++|+. ||.|+.|+|... . +. .+-+|+|+|+..+.|.+|.+ |
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 356799999999999999999999997 999999999865 2 11 24589999999999999999 5
Q ss_pred C
Q 013503 414 S 414 (442)
Q Consensus 414 n 414 (442)
+
T Consensus 307 ~ 307 (484)
T KOG1855|consen 307 N 307 (484)
T ss_pred c
Confidence 3
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.57 E-value=0.0047 Score=61.89 Aligned_cols=76 Identities=18% Similarity=0.339 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCcChHHHH------HHHhhcCCCeeEEEEecCCC---CCceE--EEEEeCCHHHHHHHHH-hcCcccCCc
Q 013503 256 RRTVYVSDIDQQVTEEQL------AALFVGCGQVVDCRICGDPN---SVLRF--AFIEFTDEEGARAALN-LAGTMLGFY 323 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L------~elF~~~G~I~~V~i~~d~~---~skG~--AFVeF~s~e~A~kAl~-Lng~~l~Gr 323 (442)
..-+||-+||+.+..|++ .++|.+||.|..|.+.+... +-.+. .||+|.+.|+|.+||. .+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 445999999999877763 47999999999887765431 11232 3999999999999998 999999999
Q ss_pred cEEEeccC
Q 013503 324 PVRVLPSK 331 (442)
Q Consensus 324 ~L~V~~s~ 331 (442)
-|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998854
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.42 E-value=0.0027 Score=63.52 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=67.3
Q ss_pred CCcEEE-EEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 255 IRRTVY-VSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLf-V~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++| |+||+..+++++|+..|..+|.|..+++..++.+ .+|||||.|.+...+..|+..+...+.++++.+....
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 345555 9999999999999999999999999999988765 4899999999999999998776677889999998864
No 163
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.31 E-value=0.011 Score=58.43 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=57.2
Q ss_pred ceeeeeCCC--CCCC---HHHHHHHhhhcCCceEEEEEeccCCC---cceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 013503 354 RTIYCTNID--KKVT---QADVKLFFESVCGEVYRLRLLGDYHH---STRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 424 (442)
Q Consensus 354 ~tL~V~NLp--~~vT---eedL~~~F~~~fG~I~~v~I~~d~g~---~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~ 424 (442)
+.|.+.|+- ..++ ++++++-+++ ||+|..|.|.-+++. ..---||+|...++|.+|+- |||..|+|+.++
T Consensus 282 kvlllrnmVg~gevd~elede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 345555542 2233 4578889998 999999988876532 12246999999999999998 999999999999
Q ss_pred EeecC
Q 013503 425 VSPSK 429 (442)
Q Consensus 425 V~~Ak 429 (442)
..|.+
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 88754
No 164
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.30 E-value=0.0092 Score=63.43 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=62.0
Q ss_pred ccCCcEEEEEcCCCc--ChH----HHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccC-Cc
Q 013503 253 EIIRRTVYVSDIDQQ--VTE----EQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLG-FY 323 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~--~Te----e~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr 323 (442)
+.....|+|-|+|-- ... .-|..+|+++|+|..+.++.+..+ .+||.|++|++..+|+.|++ +||..|. .+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 356778999999943 222 345678999999999999877654 69999999999999999999 9999986 56
Q ss_pred cEEEec
Q 013503 324 PVRVLP 329 (442)
Q Consensus 324 ~L~V~~ 329 (442)
...|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 666654
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.27 E-value=0.0065 Score=64.53 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=59.3
Q ss_pred cceeeeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCC-eeE
Q 013503 353 ARTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGS-LPI 423 (442)
Q Consensus 353 ~~tL~V~NLp~~v------TeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G-r~L 423 (442)
...|+|-|+|--- -..-|.++|++ +|+|..+.++.+. |..+||.|++|.+..+|+.|++ |||..|.- ++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3678899988631 23346679998 9999999999886 7899999999999999999999 99988764 455
Q ss_pred EEee
Q 013503 424 RVSP 427 (442)
Q Consensus 424 ~V~~ 427 (442)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 5543
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.24 E-value=0.0053 Score=63.31 Aligned_cols=67 Identities=28% Similarity=0.478 Sum_probs=57.1
Q ss_pred hhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC---CCC------------CceEEEEEeCCHHHHHHHH
Q 013503 249 AQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---PNS------------VLRFAFIEFTDEEGARAAL 313 (442)
Q Consensus 249 ~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d---~~~------------skG~AFVeF~s~e~A~kAl 313 (442)
-..++...++|.+-|||.+-..+-|.++|+.+|.|..|+|+.. +.. .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445568999999999999999999999999999999999865 211 1458999999999999999
Q ss_pred Hh
Q 013503 314 NL 315 (442)
Q Consensus 314 ~L 315 (442)
++
T Consensus 304 e~ 305 (484)
T KOG1855|consen 304 EL 305 (484)
T ss_pred Hh
Confidence 93
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.14 E-value=0.0024 Score=61.91 Aligned_cols=61 Identities=28% Similarity=0.292 Sum_probs=51.9
Q ss_pred HHHHHHhhhcCCceEEEEEeccCC-CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 368 ADVKLFFESVCGEVYRLRLLGDYH-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 368 edL~~~F~~~fG~I~~v~I~~d~g-~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
+||...|+..||+|..+.|-.+-+ +-.|-+||.|...++|++|++ ||+.++.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 556666663399999998876653 778899999999999999999 9999999999999886
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.11 E-value=0.0016 Score=63.05 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=49.6
Q ss_pred HHHHHHhh-cCCCeeEEEEecCCCCC-ceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 271 EQLAALFV-GCGQVVDCRICGDPNSV-LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 271 e~L~elF~-~~G~I~~V~i~~d~~~s-kG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
|+|...|+ +||+|+++.++....-. .|-+||.|..+++|++|++ ||+..+.|+||....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444444 89999999887655433 6889999999999999999 9999999999998886
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.96 E-value=0.0039 Score=60.42 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC----------C----ceEEEEEeCCHHHHHHHHH-hcCcc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----------V----LRFAFIEFTDEEGARAALN-LAGTM 319 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~----------s----kG~AFVeF~s~e~A~kAl~-Lng~~ 319 (442)
....||+++||+.++..-|+++|+.||.|-.|.+.+.... + ..-|+|+|.+...|..... ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988653321 1 2348899999999999887 99999
Q ss_pred cCCccE
Q 013503 320 LGFYPV 325 (442)
Q Consensus 320 l~Gr~L 325 (442)
|+|+.=
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998753
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.95 E-value=0.023 Score=51.06 Aligned_cols=57 Identities=26% Similarity=0.446 Sum_probs=46.0
Q ss_pred HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 368 ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 368 edL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.+|.+.|.. ||++.-+++..+ .-.|+|.+-++|.+|+.++|..++|+.|+|....+.
T Consensus 51 ~~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 367788887 999998888743 358999999999999999999999999999986554
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.61 E-value=0.028 Score=50.51 Aligned_cols=71 Identities=28% Similarity=0.362 Sum_probs=52.9
Q ss_pred CCcEEEEEcCC-----C-cChH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccE
Q 013503 255 IRRTVYVSDID-----Q-QVTE---EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 325 (442)
Q Consensus 255 ~~rtLfV~NLp-----~-~~Te---e~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L 325 (442)
...||.|.=+. . ..++ .+|.+.|..||.+.-+|+..+ .-+|+|.+.++|.+|+.++|..+.|+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l 99 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTL 99 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEE
Confidence 45566666555 1 2222 366778889999998888864 4799999999999999999999999999
Q ss_pred EEeccC
Q 013503 326 RVLPSK 331 (442)
Q Consensus 326 ~V~~s~ 331 (442)
+|....
T Consensus 100 ~i~LKt 105 (146)
T PF08952_consen 100 KIRLKT 105 (146)
T ss_dssp EEEE--
T ss_pred EEEeCC
Confidence 999854
No 172
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.55 E-value=0.035 Score=58.61 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=55.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhh-cCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~-~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~ 314 (442)
...+|||||+||.-+|-++|..+|. -||.|..+-|=.|++- ++|-|-|+|.+..+-.+||+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 4789999999999999999999999 8999999999888543 68999999999999999997
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.48 E-value=0.012 Score=59.18 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G--~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
.-.+||+||-+.+|+++|.+.+...| .+.++++..++. .++|||+|...+..+.++.++ |-...|+|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 45699999999999999999998877 777888877653 479999999999999999999 8888899886666543
No 174
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.47 E-value=0.022 Score=58.33 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=67.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-----g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
..|.|.||.+.+|.+.++.+|.- .|+|..+.|+... ......|||.|.+...+..|..|.++.+-++.|.|-+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 47999999999999999999996 7999999998754 23455999999999999999999898888888888776
Q ss_pred CCCCC
Q 013503 429 KTPVR 433 (442)
Q Consensus 429 k~~~~ 433 (442)
-..+.
T Consensus 87 ~~~~~ 91 (479)
T KOG4676|consen 87 GDEVI 91 (479)
T ss_pred CCCCC
Confidence 54443
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.06 E-value=0.11 Score=42.40 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=42.2
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~ 314 (442)
+......+|+ .|......||.++|+.||.|. |.++.|. -|||...+.+.|..|+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMN 60 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHH
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHH
Confidence 3445667777 999999999999999999975 6666664 69999999999999988
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.93 E-value=0.013 Score=56.88 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=58.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC----------Ccce----EEEEEeCCHHHHHHHHH-hCCc
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH----------HSTR----IAFVEFVMAESAIAALN-CSGV 416 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g----------~~rG----~AFVeF~s~e~A~~Al~-LnG~ 416 (442)
....||+++||+.....-|+++|+. ||.|-+|.+.+... ...+ -|.|+|.+...|..+.+ |||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4468999999999999999999997 99999999976321 1111 46799999999999998 9999
Q ss_pred eeCCee
Q 013503 417 VLGSLP 422 (442)
Q Consensus 417 ~l~Gr~ 422 (442)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.58 E-value=0.028 Score=60.23 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=62.4
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee---CCeeEEE
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL---GSLPIRV 425 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l---~Gr~L~V 425 (442)
...++.|||.||-.-.|.-.|+.++...+|.|....| | +-+..|||.|.+.++|.+... |||... +++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D--kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D--KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H--HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 4456899999999999999999999976888887744 2 334479999999999999998 999654 6778888
Q ss_pred eecC
Q 013503 426 SPSK 429 (442)
Q Consensus 426 ~~Ak 429 (442)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 8863
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.23 E-value=0.1 Score=51.65 Aligned_cols=60 Identities=23% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 271 EQLAALFVGCGQVVDCRICGDPNSV---LRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 271 e~L~elF~~~G~I~~V~i~~d~~~s---kG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
+++.+-+++||.|..|.|..+++.. ----||+|...++|.+|+- |||..|+|+.+...+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 5678889999999999998876542 3357999999999999987 9999999999887764
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.21 E-value=0.078 Score=53.63 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=60.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG--~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
.-.+||+||-..+|++||.+.... -| .+..+++.-+. |.++|||+|-..+..+.++.++ |-...+.|+.-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S-~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQS-TGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHh-hhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 357999999999999999999886 57 56666666554 7999999999999999999999 88899988754443
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.74 E-value=0.86 Score=39.23 Aligned_cols=66 Identities=15% Similarity=0.127 Sum_probs=49.3
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~-G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
..+.+-..|..++-++|..+.+.+ ..|..+++++|...++-.+.+.|.+.++|+.... +||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334444445555556776665655 4778899999877677789999999999999998 99988753
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.54 E-value=0.6 Score=36.03 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=43.8
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGC---GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~---G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~ 314 (442)
...|+|+++. +++.++|+.+|..| .....|.++.|. -|=|.|.+.+.|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 4569999996 47888999999988 134578888886 48899999999999986
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.50 E-value=0.59 Score=36.08 Aligned_cols=52 Identities=23% Similarity=0.396 Sum_probs=43.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcC-C--ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVC-G--EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~f-G--~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.+|+|+|++ +++.+||+.+|.. | . ....|..+-|.. |-|-|.+.+.|.+||.
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~-y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSE-YFDEEGPFRIEWIDDTS-----CNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHH-hcccCCCceEEEecCCc-----EEEEECCHHHHHHHHH
Confidence 579999985 5889999999998 6 1 466888876643 7899999999999986
No 183
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.41 E-value=0.19 Score=56.33 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=64.3
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC--ccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G--r~L~V~~s 330 (442)
...+.+++++|+..+....|...|..||.|..|.+-... -||||.|++...|+.|+. |-|..|+| +++.|.++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 357779999999999999999999999999887664333 499999999999999999 99999975 67888776
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 529 ~~ 530 (975)
T KOG0112|consen 529 SP 530 (975)
T ss_pred cC
Confidence 54
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.27 E-value=0.11 Score=55.94 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=59.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCccc---CCccEEEe
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFV-GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML---GFYPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~-~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l---~Gr~L~V~ 328 (442)
..+..|||.||-.-.|.-+|++++. .+|.|++.+| |+- +..|||.|.+.++|..-.. |+|..+ +++.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3577899999999999999999999 6677777733 222 1379999999999999998 999886 56788777
Q ss_pred cc
Q 013503 329 PS 330 (442)
Q Consensus 329 ~s 330 (442)
+.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 64
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.19 E-value=0.087 Score=55.23 Aligned_cols=74 Identities=14% Similarity=0.142 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCcC-hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQV-TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~-Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
+.+.|-+.-.|+.. |-++|...|.+||.|..|.+-.... -|.|+|.+..+|-.|....+..|+++.|+|.|-+.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 45566677777765 5589999999999999998865533 69999999999999999999999999999999653
No 186
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.95 E-value=0.16 Score=42.00 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=47.3
Q ss_pred EEEEeCCHHHHHHHHHh--cCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 299 AFIEFTDEEGARAALNL--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 299 AFVeF~s~e~A~kAl~L--ng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
|+|+|.+++-|++.+++ +...+++..+.|..+.-.... ..+-.-....+.++|.|+|||...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~-----~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGH-----LQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCC-----ceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999984 444466666666543211000 0011111134568999999999999999998664
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.79 E-value=1 Score=38.70 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=50.7
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
..+.+...|..++-++|..+.+..-..|..++|++|....+-.+.++|.+.++|..-.. .||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444555666677766665334788999999886678789999999999999998 99988875
No 188
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.51 E-value=0.58 Score=46.72 Aligned_cols=69 Identities=23% Similarity=0.294 Sum_probs=54.6
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccE-EEec
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV-RVLP 329 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L-~V~~ 329 (442)
+.-|-|-++|+.-+. .|..+|++||.|++......- .+-+|.|.+.-+|++||..+|+.|+|..+ -|.+
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 556888899887554 556789999999987665332 38999999999999999999999987643 4555
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.47 E-value=0.28 Score=45.63 Aligned_cols=68 Identities=15% Similarity=0.079 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhc-CCCe---eEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVG-CGQV---VDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~-~G~I---~~V~i~~d~~~----skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
....|.|++||+.+|++++.+.++. ++.- ..+.-...... ...-|||.|.+.+++..... ++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999999998776 6655 23331122111 24579999999999999888 99988743
No 190
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=91.31 E-value=0.2 Score=52.01 Aligned_cols=71 Identities=25% Similarity=0.290 Sum_probs=56.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC-ceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG-VVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I-~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG-~~l~Gr~L~V~~Ak~ 430 (442)
.++|+.||.+.++..||..+|... .+ .+-.++ ...|||||.+.+..-|.+|++ ++| ..+.|+++.|..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~a--k~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA--KIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc--cCCCCccee----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 468999999999999999999862 11 111111 345799999999999999999 888 679999999988744
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.86 E-value=0.49 Score=50.71 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhh--cCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcC--cccCCccEEEec
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFV--GCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLP 329 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~--~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng--~~l~Gr~L~V~~ 329 (442)
.++.|.++-||..+-.|+++.||+ .|-++.+|.+....+ =||+|++..||+.|.+ |.. +.|.|++|....
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 466799999999999999999998 477889998876654 4999999999999998 543 448899885543
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.66 E-value=0.95 Score=37.07 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=38.8
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 414 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln 414 (442)
...+|+ .|.++...||.++|++ ||.|.---| .| .-|||...+.+.|..|++ +.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFsp-fG~I~VsWi-~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSP-FGQIYVSWI-ND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCC-CCCEEEEEE-CT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhcc-CCcEEEEEE-cC-----CcEEEEeecHHHHHHHHHHhc
Confidence 456666 9999999999999998 998754444 22 269999999999999998 54
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.43 E-value=0.33 Score=47.42 Aligned_cols=74 Identities=26% Similarity=0.312 Sum_probs=59.4
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-h--cCc--ccCCccEEEecc
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-L--AGT--MLGFYPVRVLPS 330 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~-~~skG~AFVeF~s~e~A~kAl~-L--ng~--~l~Gr~L~V~~s 330 (442)
..|||.||+.-+..+.|.+-|+.||+|....++.|. ....+-++|+|...-.|.+|+. + .+. ...+++.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 779999999999999999999999999876666654 4567899999999999999998 4 222 224667666553
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.08 E-value=0.95 Score=42.51 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=45.8
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEeecCCC
Q 013503 366 TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 366 TeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~Gr~L~V~~Ak~~ 431 (442)
..+.|+++|.. |+.+..+..++..+ -..|.|.+.++|..|.. |+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHh-cCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999997 99998888886555 57899999999999999 99 99999999999998543
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.98 E-value=0.77 Score=49.25 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=53.0
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhh-cCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeEE
Q 013503 354 RTIYCTNIDKKVTQADVKLFFES-VCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIR 424 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~-~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG--~~l~Gr~L~ 424 (442)
+.|.|+-||..+..|+|+.+|.. .|-++.+|.+-.+.+ =||+|++..||+.|.+ |.. ..|.|++|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 56889999999999999999962 256889998876554 4999999999999997 633 567777654
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.86 E-value=0.15 Score=51.43 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=61.3
Q ss_pred ceeeeeCCCCCCCHHHHHH---HhhhcCCceEEEEEeccC----C-CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 013503 354 RTIYCTNIDKKVTQADVKL---FFESVCGEVYRLRLLGDY----H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 424 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~---~F~~~fG~I~~v~I~~d~----g-~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~ 424 (442)
+.+||-+|+..+..+++.+ .|.+ ||.|..|.+.++. + ....-++|+|...++|..|+. .+|..+.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678888988766555543 8887 9999999988754 1 223358999999999999999 999999999988
Q ss_pred EeecCCC
Q 013503 425 VSPSKTP 431 (442)
Q Consensus 425 V~~Ak~~ 431 (442)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887654
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.81 E-value=1.1 Score=44.82 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=54.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCee-EEEee
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP-IRVSP 427 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~-L~V~~ 427 (442)
...|.|-+.|+.- -.-|..+|++ ||+|.+.....+.+ +-+|.|.+.-+|.+||..||+.|+|-. |-|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~-cG~Vvkhv~~~ngN----wMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSR-CGEVVKHVTPSNGN----WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHh-hCeeeeeecCCCCc----eEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 3578888998864 4567888998 99999887752223 889999999999999999999998864 44544
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.57 E-value=1.5 Score=46.16 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=60.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~-G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
+...+.|+|--+|..+|-.||..|...+ -.|..+++++|....+-..+|.|.+.++|....+ +||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3348889999999999999999999866 4789999999776666779999999999999998 99998864
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.48 E-value=0.24 Score=50.03 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCcChHHHHH---HHhhcCCCeeEEEEecCCC--C---CceEEEEEeCCHHHHHHHHH-hcCcccCCccEE
Q 013503 256 RRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN--S---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~---elF~~~G~I~~V~i~~d~~--~---skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~ 326 (442)
..-+||-+|+.....+.+- +.|.+||.|..|.+..+.. . ...-++|+|...++|..||. .+|..+.|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4558999999886665553 5889999999999988762 1 23349999999999999999 999999999977
Q ss_pred EeccC
Q 013503 327 VLPSK 331 (442)
Q Consensus 327 V~~s~ 331 (442)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 76643
No 200
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.21 E-value=1.8 Score=33.80 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=43.0
Q ss_pred cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 267 QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 267 ~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
.++-++++..+..|+- .++..|+. || ||.|.+.++|+++.. .+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999975 24445554 66 999999999999999 8998887776654
No 201
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.07 E-value=0.61 Score=41.37 Aligned_cols=120 Identities=11% Similarity=-0.045 Sum_probs=76.6
Q ss_pred ChHHHHHHHhhc-CCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCCCCCCCCCCCCCCCc
Q 013503 268 VTEEQLAALFVG-CGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE 346 (442)
Q Consensus 268 ~Tee~L~elF~~-~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~ 346 (442)
.+-..|...+.. .+.-..+.+..-. .++..+.|.+++++.++++.....++|..+.+........+....
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l~---~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~------ 99 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDLG---DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVK------ 99 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEeC---CCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccc------
Confidence 455566655543 2222223333211 268999999999999999987888889888888764222211110
Q ss_pred hhhhcccceeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEE
Q 013503 347 DEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFV 399 (442)
Q Consensus 347 ~~~~~~~~tL~V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFV 399 (442)
-....--|.|.|||.. .+++-++.+-+. +|++..+...........||-|
T Consensus 100 --~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 100 --FEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred --eeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCCCcccccEEEE
Confidence 0112246889999998 788888888887 9999999776544323335444
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.81 E-value=0.44 Score=50.18 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=57.3
Q ss_pred eeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCCC
Q 013503 358 CTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 358 V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+.-.|+. -+-++|...|.+ ||+|..|.+-... -.|.|+|.+..+|-.|-..++..|+++.|+|-|-++.+
T Consensus 377 lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhccCCCCchHhhhhhhhhh-cCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 3334444 467889999998 9999999885432 25899999999998888899999999999999988854
No 203
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.70 E-value=1.6 Score=39.38 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=52.0
Q ss_pred CCcEEEEEcCCCc----ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQQ----VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~~----~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
.-.||.|+=|..+ -+...+...++.||+|.+|..+... -|.|.|.+..+|-+|+..-+....|..++..|-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-----savVvF~d~~SAC~Av~Af~s~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-----SAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-----eEEEEehhhHHHHHHHHhhcCCCCCceEEeecc
Confidence 4567777655544 3445566677899999999988643 699999999999999983333566777777664
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.38 E-value=0.95 Score=42.11 Aligned_cols=77 Identities=12% Similarity=0.090 Sum_probs=48.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCce---EEEEEecc--C--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC-----
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEV---YRLRLLGD--Y--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS----- 420 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I---~~v~I~~d--~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G----- 420 (442)
.+|.|++||+.+|++++.+.+++.++.- ..+.-... . ...-.-|||.|.+.+++..-.. ++|+.|.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 5899999999999999999777634544 33331111 1 1233469999999999888887 99976643
Q ss_pred eeEEEeecCC
Q 013503 421 LPIRVSPSKT 430 (442)
Q Consensus 421 r~L~V~~Ak~ 430 (442)
.+-.|++|--
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 2556666643
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.10 E-value=1.3 Score=46.45 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=60.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
++.|+|-.+|-.+|-.||..|.....-.|..++|++|.-..+-.+.|.|.+.++|..-.+ +||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 578999999999999999999997445899999999875566688999999999999998 99988875
No 206
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.86 E-value=1.7 Score=39.17 Aligned_cols=74 Identities=19% Similarity=0.081 Sum_probs=53.4
Q ss_pred hcccceeeeeCCCCC----CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEE
Q 013503 350 EMCARTIYCTNIDKK----VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIR 424 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~----vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~ 424 (442)
+.+..||.|+=|..+ -+...|....+. ||+|.+|.+. .+-.|.|.|.+..+|.+|+. .+. ..-|..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeec-----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344567888655544 333445556675 9999999885 34479999999999999998 544 66788888
Q ss_pred EeecCC
Q 013503 425 VSPSKT 430 (442)
Q Consensus 425 V~~Ak~ 430 (442)
.+|...
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 888653
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.85 E-value=0.52 Score=52.75 Aligned_cols=73 Identities=30% Similarity=0.295 Sum_probs=61.8
Q ss_pred eeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCce--eCCeeEEEeecCCCC
Q 013503 356 IYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV--LGSLPIRVSPSKTPV 432 (442)
Q Consensus 356 L~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~--l~Gr~L~V~~Ak~~~ 432 (442)
.++.|.+-..+-.-|.-+|.+ ||.|.+.+.+++.+ .|.|+|.+.+.|..|++ |+|.. .-|-+.+|.+|++.+
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSD-YGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHh-hcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344555567778889999998 99999999998877 79999999999999999 99965 468899999998765
Q ss_pred C
Q 013503 433 R 433 (442)
Q Consensus 433 ~ 433 (442)
.
T Consensus 376 ~ 376 (1007)
T KOG4574|consen 376 M 376 (1007)
T ss_pred c
Confidence 3
No 208
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.61 E-value=1.1 Score=49.03 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=92.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
..-+|||+|+...+..+-++.+...||.|.+++... |||.+|.....+..|+. ++...++|..+.+......
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 567899999999999999999999999988876653 99999999999999998 8888888888877663211
Q ss_pred CCCC----------CCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeC
Q 013503 334 IAPV----------NPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFV 402 (442)
Q Consensus 334 ~~~~----------~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~ 402 (442)
.... ...+.|... .+-..|.|+|....+......+.- -+...+..-..+. ++..-++|-+|.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~i-s~s~~s~~~~~e~d~h~~e~~~~~~~ 184 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQI-SSSAASRRQIAEADDHCLELEKTETE 184 (668)
T ss_pred hcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHhc-cchhhhhhhhHHHHHHHHHHHHhhcc
Confidence 1110 111222111 245677787777666666665542 2333333332222 233334555555
Q ss_pred CHHHHHHHHH
Q 013503 403 MAESAIAALN 412 (442)
Q Consensus 403 s~e~A~~Al~ 412 (442)
+...+..+..
T Consensus 185 s~~~~~~~~~ 194 (668)
T KOG2253|consen 185 SNSALSKEAE 194 (668)
T ss_pred cccccCcccc
Confidence 5444444443
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.51 E-value=2.9 Score=39.29 Aligned_cols=59 Identities=24% Similarity=0.180 Sum_probs=44.9
Q ss_pred hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hc--CcccCCccEEEeccC
Q 013503 269 TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLPSK 331 (442)
Q Consensus 269 Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Ln--g~~l~Gr~L~V~~s~ 331 (442)
..+.|+++|..++.+..+...+.- +-..|.|.+.++|.+|.. ++ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999998888777644 368999999999999998 88 899999999998874
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.28 E-value=6.1 Score=30.89 Aligned_cols=55 Identities=20% Similarity=0.234 Sum_probs=42.5
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 364 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 364 ~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
.++-+|++..+.. |+ -.+|.. | .+|| ||.|.+..+|++|.. .+|..+.+..|.++
T Consensus 11 ~~~v~d~K~~Lr~-y~-~~~I~~--d---~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 11 GVTVEDFKKRLRK-YR-WDRIRD--D---RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred CccHHHHHHHHhc-CC-cceEEe--c---CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 4788999999997 76 333433 2 3343 899999999999999 99999998887653
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=82.29 E-value=5.1 Score=31.58 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=34.4
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 364 KVTQADVKLFFESVCG----EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 364 ~vTeedL~~~F~~~fG----~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.++..+|..++....| .|-.|.|.. .|+||+-.. +.|..+++ |++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788899998886333 566777742 288999866 47788888 9999999999999875
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.75 E-value=1.1 Score=50.45 Aligned_cols=71 Identities=30% Similarity=0.324 Sum_probs=61.1
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCccc--CCccEEEeccCC
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML--GFYPVRVLPSKT 332 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l--~Gr~L~V~~s~~ 332 (442)
+.++.|.+-..+..-|..+|..||.|.+.+..++-+ .|.|+|.+.+.|..|++ ++|+.+ -|-|.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 345555666778889999999999999999998876 89999999999999999 999885 588999988765
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=79.81 E-value=1.5 Score=47.96 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=58.2
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
.++||+|+-..+..+-++.+... ||-|.++.... |||.+|..+..+..|+. ++-..++|..+.+..
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 68999999999999999999997 99998886542 89999999999999998 888888888877665
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.81 E-value=11 Score=29.75 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=33.8
Q ss_pred cChHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 267 QVTEEQLAALFVGCG-----QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 267 ~~Tee~L~elF~~~G-----~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
.++..+|..++...+ .|-.|.+.. .|+||+-... .|+.+++ |++..+.|+++.|..
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 467788888887664 556777764 3899998665 6788888 999999999999875
No 215
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=65.31 E-value=18 Score=29.66 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=44.3
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.-|.--++..++..+|++.++..|| +|.+|....-... .--|||.+...++|.....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~-~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG-EKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC-cEEEEEEeCCCCcHHHHHH
Confidence 3455567889999999999999899 7888887765532 2269999998888776654
No 216
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=64.23 E-value=20 Score=28.82 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=43.8
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.-|+-.++...+..+|++.++..|| +|.+|....-++.- --|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 3566678899999999999999898 78888776655322 269999988777766543
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.50 E-value=43 Score=36.67 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=58.8
Q ss_pred hcccceeeeeCCCCC-CCHHHHHHHhhhcC----CceEEEEEeccC-CC----------c--------------------
Q 013503 350 EMCARTIYCTNIDKK-VTQADVKLFFESVC----GEVYRLRLLGDY-HH----------S-------------------- 393 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~-vTeedL~~~F~~~f----G~I~~v~I~~d~-g~----------~-------------------- 393 (442)
...++.|-|-||... +.-+||.-+|.. | |.|.+|.|.+.. |+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nS-FlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNS-FLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHh-hcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 345688999999986 889999998875 4 589999987532 21 1
Q ss_pred ------------------ceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 394 ------------------TRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 394 ------------------rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
--||.|+|.+.+.|.+..+ |+|..+......+.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 1289999999999999998 99999986544443
No 218
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.05 E-value=31 Score=36.11 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=52.5
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCcc
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYP 324 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~ 324 (442)
+....+.|-|.|+|.....++|...|+.|+ .=-.|+++.|. .||-.|.+...|..||.+.-..+.=|+
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEeee
Confidence 344678899999999999999999999996 33457777665 699999999999999986333333333
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.45 E-value=19 Score=31.20 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=33.4
Q ss_pred EEEEEcCCCc---------ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHH-HHHHHHhcC
Q 013503 258 TVYVSDIDQQ---------VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEG-ARAALNLAG 317 (442)
Q Consensus 258 tLfV~NLp~~---------~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~-A~kAl~Lng 317 (442)
++.|-|++.. .+.++|.+.|..|.++. ++.+.++..+.|++.|+|...-. -..|+.|..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 4566677543 35578999999998864 66666666778999999986544 355666443
No 220
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.15 E-value=24 Score=35.45 Aligned_cols=173 Identities=15% Similarity=0.145 Sum_probs=103.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEeCCHHHHHHHHH--h---cC--
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---------SVLRFAFIEFTDEEGARAALN--L---AG-- 317 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~---------~skG~AFVeF~s~e~A~kAl~--L---ng-- 317 (442)
-..|+|...|+..+++--.+...|.+||+|++|.++.+.. +......+.|-+.+.+-.... | ..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999997651 125678999999988765543 2 21
Q ss_pred cccCCccEEEeccCCCCCC------CCCCCCC---CC---chhhhcccceeeeeCCCCCCCHHHH-HHH---hhhcCC--
Q 013503 318 TMLGFYPVRVLPSKTAIAP------VNPTFLP---RT---EDEREMCARTIYCTNIDKKVTQADV-KLF---FESVCG-- 379 (442)
Q Consensus 318 ~~l~Gr~L~V~~s~~~~~~------~~p~~~p---~~---~~~~~~~~~tL~V~NLp~~vTeedL-~~~---F~~~fG-- 379 (442)
+.+....|.+.+..-.... ..+.+.. .. .-......|.|.|.=- ..+.++++ .+. ... -+
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~-~~n~ 170 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKN-SNNK 170 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhcc-CCCc
Confidence 2355666666553211000 0011100 00 0001223456666532 33433333 222 221 13
Q ss_pred --ceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hC--CceeC-CeeEEEeec
Q 013503 380 --EVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CS--GVVLG-SLPIRVSPS 428 (442)
Q Consensus 380 --~I~~v~I~~d~----g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~-Gr~L~V~~A 428 (442)
.+++|.|+... .=+..||.+.|-+...|...++ +. +...+ .+...|..+
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~ 229 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQ 229 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEecc
Confidence 36777777543 2367799999999999999988 53 33332 345555544
No 221
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=46.13 E-value=8.7 Score=22.38 Aligned_cols=16 Identities=69% Similarity=0.829 Sum_probs=12.3
Q ss_pred HHhccCCcceeccCCC
Q 013503 172 LFSKLNPMAEEFVPPS 187 (442)
Q Consensus 172 lfs~~g~~a~~~vPp~ 187 (442)
+.+++||.|.+|+|+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4578999999999975
No 222
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=46.09 E-value=23 Score=30.67 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=30.8
Q ss_pred eeeeeCCCCC---------CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCC-HHHHHHHHH
Q 013503 355 TIYCTNIDKK---------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM-AESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~---------vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s-~e~A~~Al~ 412 (442)
++.|-|++.+ .+.++|.+.|.. |..++ ++.+.+...++|++.|+|.. -.--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4566676443 456889999998 88765 55556665678999999985 334444443
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.81 E-value=47 Score=34.80 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=50.0
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLP 422 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~ 422 (442)
-.+.|-|.|+|.....+||...|+. |+ .=-+|.++-|. .||--|.+...|..||.|...++.=++
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~-yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFET-YQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHH-hhcCCceeEEeecc-----eeEEeecchHHHHHHhhccCceEEeee
Confidence 3478999999999999999999998 76 44566665443 589999999999999986444444343
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.64 E-value=60 Score=32.71 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=59.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---------CCcceEEEEEeCCHHHHHHHHH--hCC-----
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---------HHSTRIAFVEFVMAESAIAALN--CSG----- 415 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~---------g~~rG~AFVeF~s~e~A~~Al~--LnG----- 415 (442)
.+|.|...|+..+++-..+..-|-+ ||+|++|.++.+. .+......+.|-+.+.|..--+ |+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998 9999999998765 1344578899999988776554 322
Q ss_pred ceeCCeeEEEeec
Q 013503 416 VVLGSLPIRVSPS 428 (442)
Q Consensus 416 ~~l~Gr~L~V~~A 428 (442)
..+....|.+.+.
T Consensus 93 ~~L~S~~L~lsFV 105 (309)
T PF10567_consen 93 TKLKSESLTLSFV 105 (309)
T ss_pred HhcCCcceeEEEE
Confidence 5677777887775
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.19 E-value=1.1e+02 Score=33.59 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=59.0
Q ss_pred ccCCcEEEEEcCCCc-ChHHHHHHHhhcC----CCeeEEEEecCC-----------CC----------------------
Q 013503 253 EIIRRTVYVSDIDQQ-VTEEQLAALFVGC----GQVVDCRICGDP-----------NS---------------------- 294 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~-~Tee~L~elF~~~----G~I~~V~i~~d~-----------~~---------------------- 294 (442)
...++.|-|-|+.++ +.-++|.-+|+.| |.|.+|.|++.. .+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446788999999987 7779999999866 589999886411 00
Q ss_pred ----------------CceEEEEEeCCHHHHHHHHH-hcCcccC--CccEEEec
Q 013503 295 ----------------VLRFAFIEFTDEEGARAALN-LAGTMLG--FYPVRVLP 329 (442)
Q Consensus 295 ----------------skG~AFVeF~s~e~A~kAl~-Lng~~l~--Gr~L~V~~ 329 (442)
..-||.|+|.+.+.|.+..+ ++|..+. +..|-+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12479999999999999998 9999986 44444444
No 226
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=37.76 E-value=19 Score=35.24 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=28.5
Q ss_pred eeehhhcccccchhhhhhhhhhhhhhhhh------hhchhHHHHhhhhhc
Q 013503 73 SLRLFSFIDQSKVKIFERVNQVQEGKKER------KKETMAVVESASQDS 116 (442)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~ 116 (442)
-|+-.||..|+||+||.| +...+.++| .|. |-..|-|+.|+
T Consensus 16 ~l~sls~~t~s~~~iFDR--~~KR~qrdrAa~~~d~k~-dylkeeig~rl 62 (325)
T KOG2940|consen 16 FLASLSFSTESKVKIFDR--DLKRIQRDRAAWLSDQKN-DYLKEEIGDRL 62 (325)
T ss_pred HHHHhhccchhhhHhhhh--HHHHHHHhHHhhcchhhh-hHHHHHHHHHH
Confidence 367789999999999998 334444443 233 77777777665
No 227
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=35.91 E-value=87 Score=28.35 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=41.9
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.-|+--++...+..+|++.++.+|+ .|..|..+.-.+.. --|||.+....+|....+
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 4555667889999999999999888 78888776655322 269999987776654433
No 228
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=33.62 E-value=9 Score=43.35 Aligned_cols=177 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCc-ChHHHHHHHhhcC--CCeeEEEEecCCCC--------CceEEEEEeCCHHHHHHHHHhcCcccCCc
Q 013503 255 IRRTVYVSDIDQQ-VTEEQLAALFVGC--GQVVDCRICGDPNS--------VLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (442)
Q Consensus 255 ~~rtLfV~NLp~~-~Tee~L~elF~~~--G~I~~V~i~~d~~~--------skG~AFVeF~s~e~A~kAl~Lng~~l~Gr 323 (442)
.+|||+|..||.+ .++++|.++|.+. |.|....++++-+. .+--.=.+=+-.+--.++.+.+......+
T Consensus 207 ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~~~~l~~l~k~R~ki~~klE~~~~~~~~~~~K~~~~~~~K~ 286 (827)
T COG5594 207 SSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRDLGTLQELYKERDKILKKLEKALNELLNKLLKKSHLKTNKK 286 (827)
T ss_pred CCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Q ss_pred cEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeC
Q 013503 324 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFV 402 (442)
Q Consensus 324 ~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~ 402 (442)
.-.+.+++......-+...|.............. .=..+.++..|..+.=-..++ +|...+-........+.|||+|+
T Consensus 287 ~~~L~~~~~k~~~~~~~y~~~~~Rp~~~i~k~~~-~i~gKkVdaI~y~s~~l~~l~~~i~~~r~~~~~~t~~~~~FItFk 365 (827)
T COG5594 287 SGKLTPSRKKEFEILPEYVPDKKRPKHRIKKLNK-GIFGKKVDAIDYYSAKLTKLDAEIENARKSLYENTPTKSGFITFK 365 (827)
T ss_pred CCCCCCcccccchhhhhhccccccchhhhhhhhh-hhccceecHHHHHHHHHHHHHHHHHHHHhCccccCccccEEEEEe
Q ss_pred CHHHHHHHHH--hCCceeCCeeEEEeecCCCC
Q 013503 403 MAESAIAALN--CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 403 s~e~A~~Al~--LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
+...|+.|-+ +....+++.++.+.++-..+
T Consensus 366 Sq~~Aq~~aQ~~~~sr~~~~~~v~iapaPnDi 397 (827)
T COG5594 366 SQASAQIAAQSQIYSRVLGKLKVEIAPAPNDI 397 (827)
T ss_pred hhHHHHHHHHhhhhhhhhcceeeeecCCcccc
No 229
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=32.13 E-value=67 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.7
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYH 391 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g 391 (442)
..|+-.++..++..+|++.++..|| +|.+|....-.|
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 3556668889999999999999999 788887765544
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=29.91 E-value=1.1e+02 Score=30.93 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=35.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVM 403 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s 403 (442)
.-|+++||+.++.-.||+..+.+ -| ...++.+. .+.|-||+.|-+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~-~~~~pm~iswk----g~~~k~flh~~~ 376 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRK-RECTPMSISWK----GHFGKCFLHFGN 376 (396)
T ss_pred cceeeccCccccchHHHHHHHHh-cCCCceeEeee----cCCcceeEecCC
Confidence 56999999999999999999987 45 34555553 355689999975
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=29.21 E-value=1.3e+02 Score=30.25 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEeCCHHH
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEG 308 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~-I~~V~i~~d~~~skG~AFVeF~s~e~ 308 (442)
...-|+++|||.++.-.+|+..+.+.|. -.++.+. ++.|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee----cCCcceeEecCCccC
Confidence 4455999999999999999999887763 2344443 345789999987543
No 232
>CHL00030 rpl23 ribosomal protein L23
Probab=28.32 E-value=80 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.1
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYH 391 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g 391 (442)
.-|+--++..++..+|++.++..|| .|..|....-.+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~ 57 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPR 57 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCC
Confidence 4566668899999999999999898 788887766554
No 233
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.34 E-value=13 Score=39.29 Aligned_cols=82 Identities=6% Similarity=-0.153 Sum_probs=61.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
+...++..+|-..++.++.-+|+. ||.|.-+.+.+.. +...-.+||.-.+ ++|..+++ +.-..+.|..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 355688899999999999999998 9999888776643 2334467776654 56778887 77788888888888887
Q ss_pred CCCCCCC
Q 013503 430 TPVRPRA 436 (442)
Q Consensus 430 ~~~~pr~ 436 (442)
...-.|.
T Consensus 81 ~s~~~r~ 87 (572)
T KOG4365|consen 81 SSSEKRS 87 (572)
T ss_pred hhhhhhh
Confidence 6654444
No 234
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.50 E-value=23 Score=23.84 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=16.9
Q ss_pred chhHHHHhhhhhcCCCccCcc
Q 013503 104 ETMAVVESASQDSAVSSAGSI 124 (442)
Q Consensus 104 ~~~~v~~~~~~~~~~~~~~~~ 124 (442)
+..+-++.+|.+.|+|+|++|
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 445668889999999999876
No 235
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=22.79 E-value=27 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=18.1
Q ss_pred hhHHHHhhhhhcCCCccCccCCCCC
Q 013503 105 TMAVVESASQDSAVSSAGSIPASNG 129 (442)
Q Consensus 105 ~~~v~~~~~~~~~~~~~~~~~~~~~ 129 (442)
.|.|++.||+.+||+..+|+.+.-.
T Consensus 2 ~~~Ii~~Va~~~~v~~~~i~s~~R~ 26 (70)
T PF08299_consen 2 IEDIIEAVAEYFGVSVEDIRSKSRK 26 (70)
T ss_dssp HHHHHHHHHHHTT--HHHHHSS---
T ss_pred HHHHHHHHHHHHCCCHHHHhCCCCC
Confidence 4789999999999999999977654
No 236
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=22.41 E-value=48 Score=27.43 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhh
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFV 278 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~ 278 (442)
...++|.|.|||...++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4688999999999999999998755
No 237
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=21.85 E-value=1.6e+02 Score=24.72 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=30.9
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCC
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHH 392 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~ 392 (442)
..|+--+....+..+|+..++..|| +|.+|..+.-++.
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 4566667889999999999999999 7889987766543
No 238
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.80 E-value=74 Score=29.91 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=48.6
Q ss_pred ceeeeeCCCCCC-CHHHH----HHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eEEEe
Q 013503 354 RTIYCTNIDKKV-TQADV----KLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRVS 426 (442)
Q Consensus 354 ~tL~V~NLp~~v-TeedL----~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-~L~V~ 426 (442)
.++.+.+++..+ +.... .++|.+ |-+..-..++ ++.+..-|.|.+++.|..|.- +++..|.|. .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq-~n~~~~fq~l----rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQ-INEDATFQLL----RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhh-hCcchHHHHH----HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 567777777652 22233 334443 4443333443 344567899999999999997 999999998 88877
Q ss_pred ecCCC
Q 013503 427 PSKTP 431 (442)
Q Consensus 427 ~Ak~~ 431 (442)
++++.
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 77553
No 239
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.78 E-value=1.1e+02 Score=25.29 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=36.9
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC------C------cceEEEEEeCCH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYH------H------STRIAFVEFVMA 404 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g------~------~rG~AFVeF~s~ 404 (442)
..|.-.++..++..||++.++..|| .|.+|....-.| . ..--|+|++...
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 4556668899999999999999999 788887665432 1 112688888765
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=20.62 E-value=2.1e+02 Score=22.27 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=42.4
Q ss_pred HHHHHHhhhcCC-ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 368 ADVKLFFESVCG-EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 368 edL~~~F~~~fG-~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
++|.+-|.. .| +|..+.-+... ..+...-||+.+...+...+ ++=..++++.|+|+..+..
T Consensus 2 ~~I~~~L~~-~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKD-QGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHH-cCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCCC
Confidence 467778877 68 78887666654 35566778888766553333 5567789999999986543
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.22 E-value=1.7e+02 Score=29.27 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 299 AFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 299 AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
|||+|++..+|..|++ +.... ++.+.+..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998 33332 244455554
Done!