Query 013503
Match_columns 442
No_of_seqs 474 out of 1877
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.3E-32 1.1E-36 256.1 21.6 164 255-431 14-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 7.2E-32 2.5E-36 240.1 20.4 161 257-430 1-166 (166)
3 2qfj_A FBP-interacting repress 100.0 2.9E-32 9.9E-37 253.9 16.9 183 251-437 23-211 (216)
4 1l3k_A Heterogeneous nuclear r 100.0 3E-31 1E-35 243.4 21.1 177 252-437 9-189 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.8E-30 6.2E-35 232.2 20.1 159 255-428 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 2.8E-30 9.5E-35 230.1 21.0 158 256-428 2-167 (167)
7 3nmr_A Cugbp ELAV-like family 100.0 1.9E-30 6.6E-35 233.2 19.7 161 255-429 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 9.7E-31 3.3E-35 234.1 14.7 161 255-431 2-166 (167)
9 2ghp_A U4/U6 snRNA-associated 100.0 1.7E-30 5.9E-35 254.2 14.2 235 160-431 49-291 (292)
10 3smz_A Protein raver-1, ribonu 100.0 5.3E-30 1.8E-34 249.8 16.6 167 255-433 94-266 (284)
11 1fje_B Nucleolin RBD12, protei 100.0 4.8E-30 1.6E-34 231.9 14.1 164 252-431 9-174 (175)
12 3tyt_A Heterogeneous nuclear r 100.0 3.9E-29 1.3E-33 235.1 18.8 170 255-428 3-204 (205)
13 2g4b_A Splicing factor U2AF 65 100.0 6.7E-29 2.3E-33 223.2 19.4 155 255-428 3-171 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 1.3E-28 4.5E-33 226.1 20.9 174 255-433 3-196 (198)
15 2adc_A Polypyrimidine tract-bi 100.0 2E-28 6.8E-33 232.7 21.0 173 253-432 31-229 (229)
16 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-28 4.5E-33 240.8 18.3 161 251-433 36-199 (292)
17 1qm9_A Polypyrimidine tract-bi 100.0 1E-28 3.5E-33 228.0 16.2 171 255-432 2-198 (198)
18 3pgw_A U1-A; protein-RNA compl 100.0 5E-28 1.7E-32 235.6 21.4 173 253-430 6-282 (282)
19 3smz_A Protein raver-1, ribonu 100.0 1.6E-27 5.6E-32 232.2 20.4 158 251-434 17-178 (284)
20 3sde_A Paraspeckle component 1 99.9 8.6E-27 2.9E-31 225.8 19.9 154 253-431 19-179 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 8.9E-22 3.1E-26 176.0 15.2 148 285-434 2-153 (158)
22 4f25_A Polyadenylate-binding p 99.8 5.4E-21 1.9E-25 163.1 9.5 110 254-369 3-113 (115)
23 2i2y_A Fusion protein consists 99.8 6.5E-20 2.2E-24 163.0 13.5 140 288-432 5-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-18 1.5E-22 141.5 11.1 77 353-430 19-98 (99)
25 4f25_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 139.3 11.3 79 353-432 5-84 (115)
26 2lea_A Serine/arginine-rich sp 99.7 1.1E-17 3.6E-22 147.0 8.2 125 297-437 5-133 (135)
27 4fxv_A ELAV-like protein 1; RN 99.7 3.5E-17 1.2E-21 136.1 10.6 78 254-331 17-97 (99)
28 2lxi_A RNA-binding protein 10; 99.7 1.2E-17 4.2E-22 136.6 7.1 80 353-433 1-85 (91)
29 1whw_A Hypothetical protein ri 99.7 1.3E-16 4.3E-21 131.4 11.7 88 352-440 7-97 (99)
30 2hvz_A Splicing factor, argini 99.7 8.2E-17 2.8E-21 133.2 10.0 99 257-362 1-100 (101)
31 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.4E-16 8.2E-21 130.8 12.7 84 352-436 14-98 (103)
32 2cjk_A Nuclear polyadenylated 99.7 3.5E-17 1.2E-21 145.7 8.0 153 159-331 10-164 (167)
33 2cpf_A RNA binding motif prote 99.7 1.8E-16 6E-21 130.3 11.5 84 352-436 4-93 (98)
34 3p5t_L Cleavage and polyadenyl 99.7 3E-17 1E-21 133.4 6.6 82 354-436 2-88 (90)
35 2cq3_A RNA-binding protein 9; 99.7 3.5E-16 1.2E-20 129.8 13.2 83 352-435 14-97 (103)
36 2d9p_A Polyadenylate-binding p 99.7 2E-16 6.9E-21 131.3 11.5 83 352-435 14-97 (103)
37 3bs9_A Nucleolysin TIA-1 isofo 99.7 2E-16 7E-21 126.8 11.0 78 353-431 6-86 (87)
38 2cq0_A Eukaryotic translation 99.7 2.5E-16 8.6E-21 130.7 11.8 83 352-435 14-99 (103)
39 4f02_A Polyadenylate-binding p 99.7 7.2E-18 2.5E-22 158.1 2.7 155 159-331 22-179 (213)
40 2dnz_A Probable RNA-binding pr 99.7 2.7E-16 9.4E-21 128.3 11.7 84 352-436 4-90 (95)
41 3s8s_A Histone-lysine N-methyl 99.7 2.2E-16 7.6E-21 133.9 11.4 79 352-431 5-86 (110)
42 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.3E-21 144.3 10.4 134 301-435 11-156 (165)
43 2dgo_A Cytotoxic granule-assoc 99.7 5E-16 1.7E-20 131.4 13.5 84 352-436 14-100 (115)
44 3md1_A Nuclear and cytoplasmic 99.7 3.4E-16 1.2E-20 124.4 11.7 77 354-431 2-81 (83)
45 3lqv_A PRE-mRNA branch site pr 99.7 8.7E-17 3E-21 136.1 8.7 103 254-380 6-109 (115)
46 2dgv_A HnRNP M, heterogeneous 99.7 2E-16 6.8E-21 128.3 10.1 83 352-435 7-90 (92)
47 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.9E-16 6.6E-21 131.0 10.1 84 352-436 11-97 (102)
48 2dgs_A DAZ-associated protein 99.7 3.6E-16 1.2E-20 128.8 11.6 83 352-435 9-93 (99)
49 2dnh_A Bruno-like 5, RNA bindi 99.7 3.7E-16 1.3E-20 130.0 11.7 83 351-434 13-100 (105)
50 2cpz_A CUG triplet repeat RNA- 99.7 4E-16 1.4E-20 132.1 12.1 82 352-434 24-108 (115)
51 1x5t_A Splicing factor 3B subu 99.7 2.3E-16 7.8E-21 129.0 10.0 84 352-436 4-91 (96)
52 2lkz_A RNA-binding protein 5; 99.7 7E-17 2.4E-21 133.7 6.9 78 353-431 9-95 (95)
53 2cq3_A RNA-binding protein 9; 99.7 5.4E-16 1.8E-20 128.7 12.3 81 253-333 12-93 (103)
54 2do4_A Squamous cell carcinoma 99.7 5.1E-16 1.7E-20 128.2 12.1 81 352-433 16-98 (100)
55 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.3E-16 1.5E-20 129.2 11.5 80 253-332 12-92 (103)
56 2dgx_A KIAA0430 protein; RRM d 99.7 4.2E-16 1.4E-20 128.2 11.1 80 353-434 9-93 (96)
57 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3E-16 1E-20 125.3 9.8 77 352-429 6-85 (85)
58 2cqd_A RNA-binding region cont 99.7 6.3E-16 2.2E-20 131.1 12.3 87 351-439 15-104 (116)
59 1x5s_A Cold-inducible RNA-bind 99.7 2.4E-16 8.1E-21 130.5 9.4 85 352-437 11-98 (102)
60 3s8s_A Histone-lysine N-methyl 99.7 3.3E-16 1.1E-20 132.8 10.3 78 254-331 4-84 (110)
61 2lxi_A RNA-binding protein 10; 99.7 1.1E-16 3.8E-21 130.8 6.8 77 256-332 1-82 (91)
62 2cqc_A Arginine/serine-rich sp 99.7 7.6E-16 2.6E-20 125.5 11.7 78 352-430 14-94 (95)
63 2cph_A RNA binding motif prote 99.7 6.3E-16 2.1E-20 128.9 11.4 83 352-435 14-101 (107)
64 1x4h_A RNA-binding protein 28; 99.7 7.6E-16 2.6E-20 129.2 11.9 83 352-435 14-105 (111)
65 2fy1_A RNA-binding motif prote 99.7 4.9E-16 1.7E-20 132.7 10.8 83 352-435 6-90 (116)
66 2do0_A HnRNP M, heterogeneous 99.7 1.2E-15 3.9E-20 128.8 12.9 79 352-431 14-94 (114)
67 2x1f_A MRNA 3'-END-processing 99.6 5.7E-16 2E-20 127.0 10.7 81 353-434 2-85 (96)
68 2qfj_A FBP-interacting repress 99.6 3.1E-16 1.1E-20 145.4 10.2 160 160-333 36-205 (216)
69 2ywk_A Putative RNA-binding pr 99.6 7.7E-16 2.6E-20 125.6 10.8 78 352-430 15-94 (95)
70 3ucg_A Polyadenylate-binding p 99.6 7E-16 2.4E-20 124.2 10.3 79 352-431 5-85 (89)
71 1x5u_A Splicing factor 3B subu 99.6 7.8E-16 2.7E-20 128.0 10.7 84 352-436 14-100 (105)
72 2dnm_A SRP46 splicing factor; 99.6 4.4E-16 1.5E-20 129.2 9.2 82 352-434 12-96 (103)
73 1p27_B RNA-binding protein 8A; 99.6 6.1E-16 2.1E-20 128.9 10.0 80 352-432 22-104 (106)
74 2e5h_A Zinc finger CCHC-type a 99.6 7.5E-16 2.5E-20 125.4 10.3 77 352-429 15-94 (94)
75 4a8x_A RNA-binding protein wit 99.6 7.1E-16 2.4E-20 123.7 9.8 78 353-431 4-85 (88)
76 3nmr_A Cugbp ELAV-like family 99.6 7E-17 2.4E-21 144.4 4.2 156 159-330 10-174 (175)
77 2err_A Ataxin-2-binding protei 99.6 4.7E-16 1.6E-20 131.1 9.0 81 350-431 26-107 (109)
78 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.2E-16 2.1E-20 123.4 9.3 78 254-331 5-85 (85)
79 3p5t_L Cleavage and polyadenyl 99.6 3E-16 1E-20 127.4 7.5 76 257-332 2-82 (90)
80 2dnz_A Probable RNA-binding pr 99.6 1.7E-15 6E-20 123.5 12.1 80 254-333 3-85 (95)
81 1sjq_A Polypyrimidine tract-bi 99.6 6.3E-16 2.2E-20 130.4 9.6 79 352-435 15-96 (105)
82 2cpz_A CUG triplet repeat RNA- 99.6 1.6E-15 5.3E-20 128.5 12.1 80 254-333 23-105 (115)
83 2dgs_A DAZ-associated protein 99.6 1.5E-15 5.3E-20 125.0 11.6 80 253-332 7-88 (99)
84 2dng_A Eukaryotic translation 99.6 1.7E-15 5.8E-20 125.8 11.9 82 352-435 14-97 (103)
85 2d9p_A Polyadenylate-binding p 99.6 1.1E-15 3.6E-20 126.9 10.7 81 253-333 12-93 (103)
86 2lkz_A RNA-binding protein 5; 99.6 2.9E-16 9.9E-21 129.9 7.0 78 254-331 7-93 (95)
87 1s79_A Lupus LA protein; RRM, 99.6 5.8E-16 2E-20 129.8 9.0 79 253-331 8-87 (103)
88 2e5h_A Zinc finger CCHC-type a 99.6 7.6E-16 2.6E-20 125.4 9.4 78 254-331 14-94 (94)
89 3s7r_A Heterogeneous nuclear r 99.6 1.1E-15 3.7E-20 122.8 10.2 80 251-330 6-87 (87)
90 1oo0_B CG8781-PA, drosophila Y 99.6 9E-16 3.1E-20 128.8 10.1 81 352-433 25-108 (110)
91 2dgo_A Cytotoxic granule-assoc 99.6 2.1E-15 7.2E-20 127.5 12.5 82 253-334 12-96 (115)
92 2dgv_A HnRNP M, heterogeneous 99.6 1E-15 3.6E-20 124.1 10.1 80 254-333 6-86 (92)
93 2div_A TRNA selenocysteine ass 99.6 9.1E-16 3.1E-20 126.3 9.9 81 352-433 8-96 (99)
94 2dgx_A KIAA0430 protein; RRM d 99.6 1E-15 3.5E-20 125.9 10.1 77 255-332 8-89 (96)
95 2dnm_A SRP46 splicing factor; 99.6 7.5E-16 2.6E-20 127.8 9.4 81 253-333 10-93 (103)
96 2cpf_A RNA binding motif prote 99.6 8.1E-16 2.8E-20 126.3 9.5 79 255-333 4-88 (98)
97 2ywk_A Putative RNA-binding pr 99.6 7.4E-16 2.5E-20 125.7 9.1 79 253-331 13-93 (95)
98 2cq0_A Eukaryotic translation 99.6 1.2E-15 4.2E-20 126.5 10.6 80 253-332 12-94 (103)
99 1whw_A Hypothetical protein ri 99.6 1.6E-15 5.5E-20 124.8 11.2 80 254-333 6-88 (99)
100 2jwn_A Embryonic polyadenylate 99.6 1.4E-15 4.9E-20 130.3 11.4 84 350-434 33-118 (124)
101 3pgw_S U1-70K; protein-RNA com 99.6 2.4E-16 8.1E-21 164.0 7.7 156 273-432 9-183 (437)
102 3md1_A Nuclear and cytoplasmic 99.6 1.4E-15 4.8E-20 120.8 10.5 76 256-331 1-79 (83)
103 3s7r_A Heterogeneous nuclear r 99.6 1.4E-15 4.9E-20 122.1 10.6 76 352-428 10-87 (87)
104 2dgp_A Bruno-like 4, RNA bindi 99.6 1.1E-15 3.9E-20 127.2 10.3 82 352-434 12-99 (106)
105 2jrs_A RNA-binding protein 39; 99.6 1.3E-15 4.5E-20 128.4 10.7 80 351-431 24-106 (108)
106 2cqc_A Arginine/serine-rich sp 99.6 1.2E-15 4E-20 124.4 10.1 79 253-331 12-93 (95)
107 2err_A Ataxin-2-binding protei 99.6 5.9E-16 2E-20 130.5 8.3 79 253-331 26-105 (109)
108 2cpe_A RNA-binding protein EWS 99.6 1.3E-15 4.5E-20 128.4 10.5 82 352-434 14-106 (113)
109 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.3E-15 4.5E-20 122.0 10.0 77 255-331 5-84 (87)
110 1u6f_A Tcubp1, RNA-binding pro 99.6 2.3E-15 7.9E-20 131.5 12.3 85 350-435 39-126 (139)
111 1wi8_A EIF-4B, eukaryotic tran 99.6 1.9E-15 6.6E-20 125.7 11.3 82 352-435 14-98 (104)
112 2kt5_A RNA and export factor-b 99.6 1.9E-15 6.4E-20 129.8 11.5 86 352-438 34-121 (124)
113 1x4a_A Splicing factor, argini 99.6 2.7E-15 9.4E-20 125.8 12.2 82 352-435 21-103 (109)
114 1x4a_A Splicing factor, argini 99.6 2.4E-15 8.3E-20 126.1 11.9 79 254-333 20-99 (109)
115 2dnh_A Bruno-like 5, RNA bindi 99.6 2.4E-15 8.1E-20 125.1 11.6 79 254-332 13-96 (105)
116 1b7f_A Protein (SXL-lethal pro 99.6 2.2E-16 7.6E-21 140.4 5.7 153 159-330 10-168 (168)
117 2cph_A RNA binding motif prote 99.6 1.8E-15 6.3E-20 126.0 10.9 80 253-332 12-96 (107)
118 1x4b_A Heterogeneous nuclear r 99.6 3.1E-15 1.1E-19 126.8 12.5 85 351-436 25-111 (116)
119 1x5u_A Splicing factor 3B subu 99.6 1.6E-15 5.5E-20 126.1 10.4 80 253-332 12-94 (105)
120 1s79_A Lupus LA protein; RRM, 99.6 9.6E-16 3.3E-20 128.5 9.1 77 353-430 11-88 (103)
121 1x4g_A Nucleolysin TIAR; struc 99.6 2.4E-15 8.1E-20 126.3 11.4 82 351-437 23-105 (109)
122 2cpi_A CCR4-NOT transcription 99.6 1.6E-15 5.4E-20 128.2 10.3 81 352-433 14-103 (111)
123 3md3_A Nuclear and cytoplasmic 99.6 2.8E-16 9.5E-21 139.1 5.9 153 160-331 8-165 (166)
124 2dh8_A DAZ-associated protein 99.6 1.6E-15 5.5E-20 126.2 10.1 83 352-435 15-99 (105)
125 3ulh_A THO complex subunit 4; 99.6 2.6E-15 8.8E-20 125.3 11.1 77 352-429 28-106 (107)
126 2do4_A Squamous cell carcinoma 99.6 2.6E-15 8.7E-20 123.9 11.0 78 254-331 15-94 (100)
127 2cqg_A TDP-43, TAR DNA-binding 99.6 5.7E-15 1.9E-19 122.5 13.1 83 352-436 14-98 (103)
128 2la6_A RNA-binding protein FUS 99.6 1.8E-15 6.1E-20 124.8 10.0 77 352-429 12-99 (99)
129 3ulh_A THO complex subunit 4; 99.6 1.5E-15 5.1E-20 126.7 9.6 79 253-331 26-106 (107)
130 2dhg_A TRNA selenocysteine ass 99.6 2E-15 6.9E-20 125.3 10.3 84 352-435 8-94 (104)
131 2fy1_A RNA-binding motif prote 99.6 3.5E-15 1.2E-19 127.3 12.0 80 254-333 5-86 (116)
132 2fc9_A NCL protein; structure 99.6 2.2E-15 7.7E-20 124.5 10.4 82 352-437 14-97 (101)
133 2dnq_A RNA-binding protein 4B; 99.6 3.2E-15 1.1E-19 121.1 11.1 77 352-435 7-84 (90)
134 1x5t_A Splicing factor 3B subu 99.6 1.9E-15 6.4E-20 123.5 9.6 79 254-332 3-85 (96)
135 1x5s_A Cold-inducible RNA-bind 99.6 1.9E-15 6.4E-20 125.0 9.7 79 254-332 10-91 (102)
136 2cq1_A PTB-like protein L; RRM 99.6 3.8E-15 1.3E-19 124.6 11.6 79 352-435 14-95 (101)
137 2krb_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 121.3 8.1 72 256-327 1-80 (81)
138 2ki2_A SS-DNA binding protein 99.6 3.2E-16 1.1E-20 126.7 4.9 82 354-437 2-86 (90)
139 3ns6_A Eukaryotic translation 99.6 1.2E-15 4.2E-20 126.6 8.5 78 254-331 4-91 (100)
140 1sjq_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 128.2 9.0 76 253-332 13-91 (105)
141 3ns6_A Eukaryotic translation 99.6 4.8E-16 1.7E-20 129.0 5.8 77 353-430 6-92 (100)
142 3ucg_A Polyadenylate-binding p 99.6 2.6E-15 8.8E-20 120.8 10.0 78 255-332 5-84 (89)
143 2khc_A Testis-specific RNP-typ 99.6 2.6E-15 8.9E-20 127.6 10.4 78 351-429 38-118 (118)
144 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.8E-20 126.1 8.3 80 352-432 7-89 (104)
145 2mss_A Protein (musashi1); RNA 99.6 9.3E-16 3.2E-20 119.8 6.8 73 355-428 1-75 (75)
146 2la6_A RNA-binding protein FUS 99.6 3.2E-15 1.1E-19 123.2 10.3 78 253-330 10-98 (99)
147 2ad9_A Polypyrimidine tract-bi 99.6 2.4E-15 8.2E-20 129.6 9.9 82 352-438 30-114 (119)
148 1p27_B RNA-binding protein 8A; 99.6 3.1E-15 1E-19 124.6 10.3 78 254-331 21-101 (106)
149 2dgw_A Probable RNA-binding pr 99.6 3.8E-15 1.3E-19 120.7 10.6 78 353-432 10-88 (91)
150 2x1f_A MRNA 3'-END-processing 99.6 3E-15 1E-19 122.7 10.0 77 256-332 2-81 (96)
151 3ex7_B RNA-binding protein 8A; 99.6 1.6E-15 5.5E-20 130.3 8.8 83 352-435 21-106 (126)
152 2wbr_A GW182, gawky, LD47780P; 99.6 2.4E-15 8.1E-20 122.6 9.2 72 353-429 7-79 (89)
153 2wbr_A GW182, gawky, LD47780P; 99.6 1.8E-15 6.1E-20 123.3 8.4 72 255-330 6-78 (89)
154 2jrs_A RNA-binding protein 39; 99.6 3.9E-15 1.3E-19 125.4 10.8 80 252-331 22-104 (108)
155 2cqp_A RNA-binding protein 12; 99.6 1.6E-15 5.5E-20 124.5 8.2 80 352-432 14-96 (98)
156 1x4h_A RNA-binding protein 28; 99.6 3.9E-15 1.3E-19 124.8 10.8 80 253-332 12-100 (111)
157 2hvz_A Splicing factor, argini 99.6 1.6E-15 5.5E-20 125.3 8.2 77 354-434 1-78 (101)
158 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.9E-15 6.5E-20 125.0 8.6 80 254-333 10-92 (102)
159 2mss_A Protein (musashi1); RNA 99.6 1.3E-15 4.3E-20 119.0 7.1 73 258-330 1-75 (75)
160 2dgp_A Bruno-like 4, RNA bindi 99.6 3.1E-15 1.1E-19 124.6 9.9 80 253-332 10-95 (106)
161 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.4E-15 1.9E-19 131.9 12.2 82 352-434 38-122 (156)
162 2dnp_A RNA-binding protein 14; 99.6 5.4E-15 1.8E-19 119.7 11.1 80 352-438 8-88 (90)
163 2cqd_A RNA-binding region cont 99.6 4.6E-15 1.6E-19 125.8 11.0 80 253-333 14-96 (116)
164 2dgt_A RNA-binding protein 30; 99.6 7.4E-15 2.5E-19 119.4 11.8 78 352-436 9-87 (92)
165 2nlw_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 126.0 8.9 79 352-431 14-100 (105)
166 4a8x_A RNA-binding protein wit 99.6 2.4E-15 8.4E-20 120.6 8.7 77 255-331 3-83 (88)
167 2kxn_B Transformer-2 protein h 99.6 2.9E-15 9.8E-20 130.5 9.7 80 351-431 44-126 (129)
168 2rs2_A Musashi-1, RNA-binding 99.6 5.2E-15 1.8E-19 124.8 11.0 82 350-432 22-105 (109)
169 1wf1_A RNA-binding protein RAL 99.6 3.1E-15 1.1E-19 125.8 9.6 76 353-435 27-104 (110)
170 2cq4_A RNA binding motif prote 99.6 2.1E-15 7.2E-20 127.5 8.5 79 253-331 22-102 (114)
171 2khc_A Testis-specific RNP-typ 99.6 5.8E-15 2E-19 125.4 11.3 78 253-330 37-117 (118)
172 2cq4_A RNA binding motif prote 99.6 1.2E-15 4.2E-20 128.9 7.0 80 351-431 23-104 (114)
173 1x4d_A Matrin 3; structural ge 99.6 2.3E-15 7.8E-20 126.3 8.4 78 352-434 14-95 (102)
174 1l3k_A Heterogeneous nuclear r 99.6 4.5E-16 1.6E-20 142.1 4.4 156 160-331 21-181 (196)
175 2dgu_A Heterogeneous nuclear r 99.6 7.2E-15 2.5E-19 122.1 11.3 79 352-437 10-89 (103)
176 3r27_A HnRNP L, heterogeneous 99.6 4.3E-15 1.5E-19 124.2 9.9 75 352-431 20-97 (100)
177 2ek1_A RNA-binding protein 12; 99.6 1.9E-15 6.6E-20 123.2 7.6 78 352-430 14-94 (95)
178 2div_A TRNA selenocysteine ass 99.6 4.1E-15 1.4E-19 122.3 9.7 79 254-332 7-93 (99)
179 2kxn_B Transformer-2 protein h 99.6 3.2E-15 1.1E-19 130.1 9.5 79 253-331 43-124 (129)
180 2cpi_A CCR4-NOT transcription 99.6 2.3E-15 7.8E-20 127.2 8.2 78 255-332 14-100 (111)
181 1fxl_A Paraneoplastic encephal 99.6 7.4E-16 2.5E-20 136.5 5.5 153 159-330 9-167 (167)
182 2dis_A Unnamed protein product 99.6 5.4E-15 1.9E-19 123.7 10.4 81 353-434 8-95 (109)
183 1x4e_A RNA binding motif, sing 99.6 1.8E-15 6.2E-20 121.0 7.2 77 254-330 3-82 (85)
184 1x4c_A Splicing factor, argini 99.6 7.2E-15 2.4E-19 123.4 11.2 76 353-434 15-96 (108)
185 1why_A Hypothetical protein ri 99.6 4.9E-15 1.7E-19 121.7 9.9 76 352-432 16-94 (97)
186 2krb_A Eukaryotic translation 99.6 1.4E-15 4.7E-20 121.0 6.3 72 354-426 2-81 (81)
187 1fjc_A Nucleolin RBD2, protein 99.6 4.4E-15 1.5E-19 121.4 9.4 80 351-434 14-94 (96)
188 2dng_A Eukaryotic translation 99.6 8.2E-15 2.8E-19 121.6 11.2 78 254-332 13-92 (103)
189 2jvr_A Nucleolar protein 3; RN 99.6 2.8E-15 9.7E-20 127.6 8.5 77 353-432 28-106 (111)
190 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.6E-19 119.5 12.3 77 352-435 14-93 (99)
191 1wez_A HnRNP H', FTP-3, hetero 99.6 3.2E-15 1.1E-19 124.8 8.6 83 352-436 14-97 (102)
192 3n9u_C Cleavage and polyadenyl 99.6 5E-15 1.7E-19 133.2 10.4 78 352-430 54-136 (156)
193 2dhg_A TRNA selenocysteine ass 99.6 6.4E-15 2.2E-19 122.2 10.2 81 253-333 6-90 (104)
194 1wex_A Hypothetical protein (r 99.6 4.5E-15 1.5E-19 124.8 9.4 79 352-435 14-95 (104)
195 1wi8_A EIF-4B, eukaryotic tran 99.6 6.5E-15 2.2E-19 122.4 10.3 78 254-332 13-93 (104)
196 1x4e_A RNA binding motif, sing 99.6 1.4E-15 4.7E-20 121.7 5.8 77 352-429 4-83 (85)
197 2do0_A HnRNP M, heterogeneous 99.6 1E-14 3.4E-19 123.0 11.4 78 255-332 14-93 (114)
198 2nlw_A Eukaryotic translation 99.6 3.4E-15 1.2E-19 124.8 8.4 79 253-331 12-98 (105)
199 2cqh_A IGF-II mRNA-binding pro 99.6 3.9E-15 1.4E-19 121.1 8.5 78 352-435 7-87 (93)
200 2kt5_A RNA and export factor-b 99.6 2.2E-14 7.4E-19 123.2 13.6 80 254-333 33-114 (124)
201 2jwn_A Embryonic polyadenylate 99.6 4.6E-15 1.6E-19 127.1 9.2 82 251-332 31-114 (124)
202 1p1t_A Cleavage stimulation fa 99.6 2.6E-15 8.7E-20 124.5 7.4 78 254-331 6-86 (104)
203 1oo0_B CG8781-PA, drosophila Y 99.6 4.5E-15 1.5E-19 124.5 8.9 78 254-331 24-104 (110)
204 2jvo_A Nucleolar protein 3; nu 99.6 5.6E-15 1.9E-19 124.5 9.5 77 350-433 28-105 (108)
205 2dnq_A RNA-binding protein 4B; 99.6 1.3E-14 4.3E-19 117.5 11.3 73 254-332 6-79 (90)
206 3r27_A HnRNP L, heterogeneous 99.6 7.8E-15 2.7E-19 122.6 10.2 75 253-331 18-95 (100)
207 2dh8_A DAZ-associated protein 99.6 4.6E-15 1.6E-19 123.5 8.8 80 253-332 13-94 (105)
208 2cpy_A RNA-binding protein 12; 99.6 2.3E-15 7.9E-20 127.7 7.1 80 352-432 14-95 (114)
209 2cpe_A RNA-binding protein EWS 99.6 6.2E-15 2.1E-19 124.3 9.7 81 252-332 11-102 (113)
210 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.8E-19 121.8 10.9 74 255-332 14-90 (101)
211 1x5o_A RNA binding motif, sing 99.6 9E-15 3.1E-19 123.5 10.5 79 352-431 24-112 (114)
212 1x4g_A Nucleolysin TIAR; struc 99.6 1.5E-14 5.1E-19 121.4 11.7 79 251-333 20-99 (109)
213 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-14 4.5E-19 126.7 11.6 82 252-333 38-122 (139)
214 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-14 5.9E-19 119.5 11.6 80 253-333 12-93 (103)
215 2ad9_A Polypyrimidine tract-bi 99.6 9.9E-15 3.4E-19 125.8 10.4 74 255-332 30-106 (119)
216 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.3E-15 7.8E-20 124.7 6.1 79 351-431 17-98 (100)
217 2db1_A Heterogeneous nuclear r 99.6 4.5E-15 1.5E-19 127.0 8.2 79 253-331 14-96 (118)
218 1x4d_A Matrin 3; structural ge 99.6 6.9E-15 2.4E-19 123.4 9.1 74 255-332 14-91 (102)
219 1wez_A HnRNP H', FTP-3, hetero 99.6 5.1E-15 1.8E-19 123.6 8.2 78 254-332 13-91 (102)
220 2e5j_A Methenyltetrahydrofolat 99.6 8.8E-15 3E-19 120.2 9.5 75 254-331 17-92 (97)
221 2m2b_A RNA-binding protein 10; 99.6 3.4E-15 1.2E-19 129.8 7.3 81 350-432 20-109 (131)
222 1x4b_A Heterogeneous nuclear r 99.6 1.4E-14 4.6E-19 122.9 10.7 79 254-332 25-105 (116)
223 2rs2_A Musashi-1, RNA-binding 99.6 1.1E-14 3.8E-19 122.7 10.0 81 251-331 20-102 (109)
224 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.9E-15 1E-19 117.2 5.9 73 354-428 1-76 (77)
225 2cpy_A RNA-binding protein 12; 99.6 4.9E-15 1.7E-19 125.7 7.7 79 253-331 12-92 (114)
226 2xnq_A Nuclear polyadenylated 99.6 1.8E-14 6.2E-19 118.9 11.0 74 352-432 21-96 (97)
227 1wex_A Hypothetical protein (r 99.6 1.5E-14 5E-19 121.6 10.5 74 255-332 14-90 (104)
228 2cpj_A Non-POU domain-containi 99.6 1E-14 3.6E-19 120.1 9.5 76 253-332 12-88 (99)
229 2db1_A Heterogeneous nuclear r 99.6 6.6E-15 2.3E-19 126.0 8.6 78 352-430 16-97 (118)
230 1why_A Hypothetical protein ri 99.6 1.3E-14 4.5E-19 119.1 10.0 74 255-332 16-92 (97)
231 2ek1_A RNA-binding protein 12; 99.6 4.4E-15 1.5E-19 121.1 7.1 77 255-331 14-93 (95)
232 2dgw_A Probable RNA-binding pr 99.6 1.2E-14 4.1E-19 117.8 9.6 78 253-331 7-85 (91)
233 1nu4_A U1A RNA binding domain; 99.6 5.7E-15 2E-19 120.8 7.7 80 352-433 7-91 (97)
234 1whx_A Hypothetical protein ri 99.6 1E-14 3.5E-19 123.4 9.5 77 352-433 9-86 (111)
235 3n9u_C Cleavage and polyadenyl 99.6 1E-14 3.4E-19 131.3 10.0 77 255-331 54-135 (156)
236 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.5E-15 1.2E-19 116.8 6.2 73 257-330 1-76 (77)
237 2dnn_A RNA-binding protein 12; 99.6 1.1E-14 3.9E-19 123.3 9.8 76 353-430 16-92 (109)
238 1wg5_A Heterogeneous nuclear r 99.6 9.9E-15 3.4E-19 121.8 9.3 78 254-331 13-92 (104)
239 1wg5_A Heterogeneous nuclear r 99.6 1.2E-14 4.2E-19 121.2 9.8 80 352-432 14-95 (104)
240 2lea_A Serine/arginine-rich sp 99.6 6.4E-15 2.2E-19 129.1 8.4 81 253-333 44-127 (135)
241 3ex7_B RNA-binding protein 8A; 99.6 1.1E-14 3.7E-19 125.2 9.6 80 254-333 20-102 (126)
242 1x5o_A RNA binding motif, sing 99.6 2.6E-14 9E-19 120.6 11.8 79 253-331 22-110 (114)
243 1whx_A Hypothetical protein ri 99.6 9.5E-15 3.2E-19 123.6 9.0 75 255-333 9-84 (111)
244 2la4_A Nuclear and cytoplasmic 99.6 8.3E-15 2.8E-19 121.0 8.4 74 352-430 26-100 (101)
245 2fc8_A NCL protein; structure 99.5 2.8E-14 9.4E-19 117.9 11.5 81 351-435 13-96 (102)
246 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.2E-14 4.1E-19 126.5 9.7 77 351-428 61-140 (140)
247 2la4_A Nuclear and cytoplasmic 99.5 9.7E-15 3.3E-19 120.6 8.7 75 253-331 24-99 (101)
248 2cpx_A Hypothetical protein FL 99.5 1.2E-14 4E-19 122.8 9.3 80 352-434 24-108 (115)
249 1iqt_A AUF1, heterogeneous nuc 99.5 2.6E-15 9E-20 117.0 4.9 73 355-428 1-75 (75)
250 2a3j_A U1 small nuclear ribonu 99.5 1.1E-14 3.9E-19 126.7 9.4 79 352-432 28-111 (127)
251 2ki2_A SS-DNA binding protein 99.5 2.6E-15 8.9E-20 121.4 5.0 75 257-332 2-79 (90)
252 2kvi_A Nuclear polyadenylated 99.5 6.8E-15 2.3E-19 120.8 7.5 78 352-436 9-88 (96)
253 2cqp_A RNA-binding protein 12; 99.5 7.8E-15 2.7E-19 120.4 7.8 77 255-331 14-93 (98)
254 2e5j_A Methenyltetrahydrofolat 99.5 1.1E-14 3.7E-19 119.7 8.7 77 352-432 18-95 (97)
255 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.4E-14 4.7E-19 126.1 9.8 76 255-330 62-140 (140)
256 2hgl_A HNRPF protein, heteroge 99.5 6.2E-15 2.1E-19 129.9 7.6 78 254-331 42-123 (136)
257 2ytc_A PRE-mRNA-splicing facto 99.5 2.3E-14 7.8E-19 114.4 10.3 73 352-429 11-85 (85)
258 1x4c_A Splicing factor, argini 99.5 1.8E-14 6.1E-19 120.9 10.1 73 255-332 14-92 (108)
259 2g4b_A Splicing factor U2AF 65 99.5 2.5E-15 8.6E-20 134.3 5.1 76 255-330 93-171 (172)
260 2jvr_A Nucleolar protein 3; RN 99.5 7.4E-15 2.5E-19 125.0 7.7 77 253-331 25-103 (111)
261 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5E-15 1.7E-19 122.7 6.5 79 252-331 15-96 (100)
262 2hgn_A Heterogeneous nuclear r 99.5 1.9E-15 6.6E-20 133.6 4.1 124 297-435 2-127 (139)
263 1wel_A RNA-binding protein 12; 99.5 6.7E-15 2.3E-19 126.6 7.3 78 254-331 23-102 (124)
264 2dis_A Unnamed protein product 99.5 2.7E-14 9.3E-19 119.4 10.8 79 255-333 7-92 (109)
265 2cpj_A Non-POU domain-containi 99.5 2.2E-14 7.5E-19 118.2 10.1 78 352-434 14-92 (99)
266 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-14 4.8E-19 122.5 9.0 78 352-431 7-85 (115)
267 2ytc_A PRE-mRNA-splicing facto 99.5 1.4E-14 4.9E-19 115.5 8.6 74 253-330 9-84 (85)
268 2dgt_A RNA-binding protein 30; 99.5 2.8E-14 9.7E-19 115.9 10.4 75 253-333 7-82 (92)
269 1iqt_A AUF1, heterogeneous nuc 99.5 3E-15 1E-19 116.7 4.4 73 258-330 1-75 (75)
270 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.2E-14 7.4E-19 128.0 10.5 80 253-332 36-118 (156)
271 2dnp_A RNA-binding protein 14; 99.5 1.7E-14 6E-19 116.7 8.9 75 253-333 6-81 (90)
272 2jvo_A Nucleolar protein 3; nu 99.5 2E-14 6.7E-19 121.2 9.3 76 251-332 26-102 (108)
273 2dnn_A RNA-binding protein 12; 99.5 2E-14 6.7E-19 121.9 9.1 76 255-331 15-91 (109)
274 2kn4_A Immunoglobulin G-bindin 99.5 2.4E-14 8.3E-19 127.6 10.2 79 254-332 68-149 (158)
275 2xnq_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 117.4 10.1 74 252-331 18-93 (97)
276 2lmi_A GRSF-1, G-rich sequence 99.5 5.7E-15 2E-19 123.9 5.6 79 253-331 8-90 (107)
277 2hgl_A HNRPF protein, heteroge 99.5 8.9E-15 3.1E-19 128.9 7.0 77 353-430 44-124 (136)
278 2xs2_A Deleted in azoospermia- 99.5 1.1E-14 3.7E-19 120.6 7.0 79 352-432 8-87 (102)
279 2kvi_A Nuclear polyadenylated 99.5 2.2E-14 7.5E-19 117.7 8.8 75 253-333 7-83 (96)
280 2e5g_A U6 snRNA-specific termi 99.5 4.3E-14 1.5E-18 115.4 10.4 74 255-331 7-80 (94)
281 1fj7_A Nucleolin RBD1, protein 99.5 5.2E-15 1.8E-19 122.3 4.9 80 352-433 16-97 (101)
282 1x4f_A Matrin 3; structural ge 99.5 1.8E-14 6.3E-19 122.8 8.3 80 350-434 22-105 (112)
283 2cpd_A Apobec-1 stimulating pr 99.5 8E-14 2.7E-18 114.8 11.5 73 254-332 13-88 (99)
284 2fc9_A NCL protein; structure 99.5 4.1E-14 1.4E-18 116.8 9.7 78 253-333 12-91 (101)
285 1wg1_A KIAA1579 protein, homol 99.5 4.9E-14 1.7E-18 113.8 9.9 75 353-433 5-80 (88)
286 2cpx_A Hypothetical protein FL 99.5 5.6E-14 1.9E-18 118.6 10.7 78 254-333 23-105 (115)
287 2lmi_A GRSF-1, G-rich sequence 99.5 5.7E-15 2E-19 123.9 4.4 79 352-431 10-92 (107)
288 2i2y_A Fusion protein consists 99.5 3.3E-14 1.1E-18 126.0 9.5 76 253-331 70-146 (150)
289 2a3j_A U1 small nuclear ribonu 99.5 3.4E-14 1.2E-18 123.7 9.4 76 255-331 28-108 (127)
290 2m2b_A RNA-binding protein 10; 99.5 9.8E-15 3.3E-19 126.9 5.8 78 254-332 21-107 (131)
291 2f3j_A RNA and export factor b 99.5 1E-13 3.4E-18 127.2 12.7 80 253-332 85-166 (177)
292 2dgu_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 117.4 9.2 73 255-333 10-83 (103)
293 2e5g_A U6 snRNA-specific termi 99.5 9.1E-14 3.1E-18 113.5 11.0 76 353-432 8-83 (94)
294 2voo_A Lupus LA protein; RNA-b 99.5 1.7E-13 5.7E-18 127.3 14.0 119 305-431 63-187 (193)
295 2yh0_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 130.7 8.3 79 253-331 111-192 (198)
296 1nu4_A U1A RNA binding domain; 99.5 1.6E-14 5.4E-19 118.2 6.2 78 253-331 5-87 (97)
297 1qm9_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 126.9 12.6 76 254-332 118-196 (198)
298 1x5p_A Negative elongation fac 99.5 1.6E-13 5.5E-18 112.7 12.0 76 352-434 14-90 (97)
299 1wel_A RNA-binding protein 12; 99.5 9.9E-15 3.4E-19 125.5 4.8 78 352-430 24-103 (124)
300 1fjc_A Nucleolin RBD2, protein 99.5 2.7E-14 9.3E-19 116.7 7.0 75 254-331 14-89 (96)
301 3egn_A RNA-binding protein 40; 99.5 2.7E-14 9.3E-19 125.5 7.4 79 352-432 44-131 (143)
302 2hgm_A HNRPF protein, heteroge 99.5 2.7E-14 9.2E-19 124.3 7.3 77 254-331 40-119 (126)
303 3q2s_C Cleavage and polyadenyl 99.5 3.3E-14 1.1E-18 135.6 8.4 78 352-430 67-149 (229)
304 2adc_A Polypyrimidine tract-bi 99.5 9.8E-14 3.3E-18 131.3 11.6 76 254-332 149-227 (229)
305 1wf1_A RNA-binding protein RAL 99.5 4.8E-14 1.6E-18 118.5 8.3 72 255-332 26-99 (110)
306 2e44_A Insulin-like growth fac 99.5 6.6E-14 2.3E-18 114.4 8.7 76 255-332 14-91 (96)
307 2e44_A Insulin-like growth fac 99.5 8.7E-14 3E-18 113.7 9.3 76 353-431 15-92 (96)
308 1wg1_A KIAA1579 protein, homol 99.5 4.9E-14 1.7E-18 113.8 7.5 73 255-332 4-77 (88)
309 2lcw_A RNA-binding protein FUS 99.2 2.7E-15 9.4E-20 127.3 0.0 81 352-433 6-97 (116)
310 2cq2_A Hypothetical protein LO 99.5 6.2E-14 2.1E-18 119.9 8.4 76 352-432 24-107 (114)
311 2dha_A FLJ20171 protein; RRM d 99.5 2.5E-14 8.6E-19 123.9 5.9 78 352-430 22-104 (123)
312 2cqh_A IGF-II mRNA-binding pro 99.5 3.6E-14 1.2E-18 115.4 6.4 74 254-332 6-82 (93)
313 2hgm_A HNRPF protein, heteroge 99.5 2.8E-14 9.7E-19 124.1 6.1 76 353-430 42-120 (126)
314 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-13 5.3E-18 120.0 10.9 75 353-431 28-106 (130)
315 2f3j_A RNA and export factor b 99.5 5.1E-14 1.7E-18 129.1 8.1 82 353-435 88-171 (177)
316 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.1E-13 3.7E-18 124.9 10.2 79 254-332 70-151 (165)
317 3q2s_C Cleavage and polyadenyl 99.5 5.5E-14 1.9E-18 134.0 8.7 77 255-331 67-148 (229)
318 2hzc_A Splicing factor U2AF 65 99.5 7.7E-14 2.6E-18 111.6 8.0 71 255-329 5-86 (87)
319 2hgn_A Heterogeneous nuclear r 99.5 1.4E-14 4.9E-19 128.0 4.0 78 254-332 44-122 (139)
320 1fj7_A Nucleolin RBD1, protein 99.5 1.5E-14 5.2E-19 119.4 4.0 77 254-331 15-93 (101)
321 1x4f_A Matrin 3; structural ge 99.5 6E-14 2.1E-18 119.6 7.7 75 254-332 23-101 (112)
322 3beg_B Splicing factor, argini 99.5 6.9E-14 2.3E-18 119.0 8.1 75 353-433 16-96 (115)
323 2xs2_A Deleted in azoospermia- 99.5 2.5E-14 8.6E-19 118.3 5.1 77 254-331 7-84 (102)
324 2dha_A FLJ20171 protein; RRM d 99.5 3.7E-14 1.3E-18 122.8 6.3 77 254-330 21-102 (123)
325 1x5p_A Negative elongation fac 99.5 3.4E-13 1.2E-17 110.7 11.5 73 254-332 13-86 (97)
326 1sjr_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 124.9 9.9 76 353-431 46-124 (164)
327 1wf0_A TDP-43, TAR DNA-binding 99.5 8.7E-14 3E-18 112.1 7.3 78 352-434 4-81 (88)
328 2lcw_A RNA-binding protein FUS 99.2 5.3E-15 1.8E-19 125.6 0.0 80 253-332 4-94 (116)
329 3beg_B Splicing factor, argini 99.5 9.2E-14 3.1E-18 118.2 7.7 72 255-331 15-92 (115)
330 2fc8_A NCL protein; structure 99.5 1.7E-13 6E-18 113.1 9.2 77 253-332 12-91 (102)
331 2hzc_A Splicing factor U2AF 65 99.5 2.1E-13 7.1E-18 109.1 9.3 71 352-427 5-86 (87)
332 3pgw_A U1-A; protein-RNA compl 99.5 1.1E-12 3.9E-17 127.0 16.2 76 253-331 204-281 (282)
333 3d2w_A TAR DNA-binding protein 99.5 1.4E-13 5E-18 111.8 8.2 73 253-331 8-82 (89)
334 3d2w_A TAR DNA-binding protein 99.4 2.3E-13 7.7E-18 110.7 9.2 76 352-432 10-85 (89)
335 3tyt_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 126.4 11.0 75 353-431 4-80 (205)
336 2pe8_A Splicing factor 45; RRM 99.4 5.6E-13 1.9E-17 112.1 11.3 79 351-430 6-93 (105)
337 3egn_A RNA-binding protein 40; 99.4 1E-13 3.4E-18 121.9 6.9 78 254-332 43-129 (143)
338 2e5i_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 116.8 9.8 74 354-432 26-103 (124)
339 1sjr_A Polypyrimidine tract-bi 99.4 3.9E-13 1.3E-17 121.9 10.2 77 255-333 45-124 (164)
340 2cq2_A Hypothetical protein LO 99.4 1.5E-13 5.1E-18 117.5 6.9 74 254-331 23-104 (114)
341 2diu_A KIAA0430 protein; struc 99.4 4.5E-13 1.5E-17 110.3 9.2 74 354-436 10-89 (96)
342 3zzy_A Polypyrimidine tract-bi 99.4 6E-13 2E-17 116.3 10.5 77 254-333 26-106 (130)
343 1wf0_A TDP-43, TAR DNA-binding 99.4 2.4E-13 8.3E-18 109.4 7.3 74 255-332 4-77 (88)
344 2dnl_A Cytoplasmic polyadenyla 99.4 5.4E-13 1.8E-17 113.0 9.4 72 255-329 7-84 (114)
345 2e5i_A Heterogeneous nuclear r 99.4 1.3E-12 4.6E-17 113.2 11.9 74 256-333 25-102 (124)
346 2bz2_A Negative elongation fac 99.4 4.9E-13 1.7E-17 115.1 8.2 76 352-434 38-114 (121)
347 2bz2_A Negative elongation fac 99.4 7.4E-13 2.5E-17 113.9 9.3 74 253-332 36-110 (121)
348 2voo_A Lupus LA protein; RNA-b 99.4 1.2E-12 4.2E-17 121.5 10.3 81 252-332 105-186 (193)
349 2diu_A KIAA0430 protein; struc 99.4 1.1E-12 3.9E-17 107.9 8.8 71 255-333 8-84 (96)
350 2dnl_A Cytoplasmic polyadenyla 99.4 1.2E-12 4.2E-17 110.8 9.2 59 353-413 8-72 (114)
351 2pe8_A Splicing factor 45; RRM 99.4 2.2E-12 7.4E-17 108.5 10.3 79 253-331 5-92 (105)
352 3u1l_A PRE-mRNA-splicing facto 99.4 8.4E-13 2.9E-17 126.8 8.0 81 352-437 133-235 (240)
353 3pgw_S U1-70K; protein-RNA com 99.3 1.5E-12 5E-17 135.5 9.8 79 254-332 100-181 (437)
354 1fje_B Nucleolin RBD12, protei 99.3 2.1E-12 7.3E-17 115.8 8.5 75 254-331 97-172 (175)
355 2dit_A HIV TAT specific factor 99.3 4.6E-12 1.6E-16 107.0 10.0 79 351-432 13-103 (112)
356 2dit_A HIV TAT specific factor 99.3 6.4E-12 2.2E-16 106.1 10.3 77 253-331 12-100 (112)
357 2j8a_A Histone-lysine N-methyl 99.3 2.1E-12 7.2E-17 112.3 7.1 75 257-331 3-94 (136)
358 2j8a_A Histone-lysine N-methyl 99.3 3.9E-12 1.3E-16 110.6 8.3 77 354-431 3-96 (136)
359 3v4m_A Splicing factor U2AF 65 99.3 5.6E-12 1.9E-16 105.9 8.3 78 352-430 4-96 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.3 7.1E-12 2.4E-16 120.4 9.6 76 254-333 132-229 (240)
361 1jmt_A Splicing factor U2AF 35 99.3 2.3E-12 7.8E-17 108.1 5.0 70 358-428 20-103 (104)
362 3sde_A Paraspeckle component 1 99.2 3.5E-11 1.2E-15 115.9 11.0 75 352-431 21-96 (261)
363 3v4m_A Splicing factor U2AF 65 99.2 2.6E-11 8.9E-16 101.8 8.7 77 255-331 4-95 (105)
364 3ue2_A Poly(U)-binding-splicin 99.2 2.8E-11 9.5E-16 103.9 8.8 78 351-429 18-107 (118)
365 2d9o_A DNAJ (HSP40) homolog, s 99.2 5.2E-11 1.8E-15 99.3 9.9 66 363-434 27-93 (100)
366 1jmt_A Splicing factor U2AF 35 99.2 9.1E-12 3.1E-16 104.4 4.7 70 261-330 20-103 (104)
367 3ue2_A Poly(U)-binding-splicin 99.1 1E-10 3.5E-15 100.4 8.6 77 255-331 19-107 (118)
368 3s6e_A RNA-binding protein 39; 99.1 2.1E-10 7.1E-15 97.9 8.8 75 352-429 6-91 (114)
369 3tht_A Alkylated DNA repair pr 99.1 1.3E-10 4.4E-15 117.1 8.7 74 351-429 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.1 8E-10 2.7E-14 92.1 11.3 62 266-332 27-89 (100)
371 3tht_A Alkylated DNA repair pr 99.1 2E-10 6.8E-15 115.8 8.1 75 253-331 15-97 (345)
372 3s6e_A RNA-binding protein 39; 99.0 7.3E-10 2.5E-14 94.5 8.9 76 254-331 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.8 1.6E-08 5.6E-13 82.4 8.4 72 354-432 8-87 (91)
374 1owx_A Lupus LA protein, SS-B, 98.7 3.7E-08 1.3E-12 84.8 9.7 73 254-330 16-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.7 4.1E-08 1.4E-12 80.0 8.4 73 255-333 6-86 (91)
376 1owx_A Lupus LA protein, SS-B, 98.7 3.9E-08 1.3E-12 84.6 8.6 72 352-428 17-93 (121)
377 3dxb_A Thioredoxin N-terminall 98.6 1.8E-07 6.2E-12 87.5 10.5 64 365-429 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 1.7E-07 6E-12 76.8 6.9 70 255-330 14-92 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.5 1.3E-07 4.6E-12 77.5 5.3 70 353-429 15-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.4 3.4E-07 1.2E-11 85.7 7.5 64 268-331 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.1 1E-05 3.5E-10 67.9 9.1 70 353-427 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.1 9.1E-06 3.1E-10 68.2 7.6 73 253-329 18-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 5.8E-05 2E-09 62.6 11.1 89 254-366 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.3 0.0011 3.6E-08 55.2 8.8 74 353-431 5-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.0 0.0049 1.7E-07 51.1 9.9 72 353-430 8-83 (104)
386 1whv_A Poly(A)-specific ribonu 96.9 0.0029 1E-07 51.9 7.4 55 253-314 13-67 (100)
387 1wey_A Calcipressin 1; structu 96.8 0.0032 1.1E-07 52.3 7.7 73 255-331 4-82 (104)
388 1wwh_A Nucleoporin 35, nucleop 96.7 0.008 2.7E-07 51.2 9.6 70 353-428 24-94 (119)
389 1wwh_A Nucleoporin 35, nucleop 96.7 0.0059 2E-07 52.0 8.7 73 253-330 21-94 (119)
390 1uw4_A UPF3X; nonsense mediate 96.7 0.0056 1.9E-07 49.7 8.0 66 257-322 2-72 (91)
391 1uw4_A UPF3X; nonsense mediate 96.2 0.016 5.4E-07 47.0 7.6 74 354-428 2-85 (91)
392 3pq1_A Poly(A) RNA polymerase; 95.8 0.0037 1.3E-07 65.0 2.7 67 247-317 44-110 (464)
393 3ctr_A Poly(A)-specific ribonu 95.4 0.018 6.2E-07 47.3 4.9 51 257-314 7-57 (101)
394 3p3d_A Nucleoporin 53; structu 95.0 0.024 8.3E-07 48.9 4.9 75 255-330 6-96 (132)
395 1whv_A Poly(A)-specific ribonu 94.8 0.034 1.2E-06 45.6 5.0 52 354-413 17-69 (100)
396 2l08_A Regulator of nonsense t 94.5 0.032 1.1E-06 45.7 4.1 68 255-322 8-80 (97)
397 3p3d_A Nucleoporin 53; structu 94.3 0.05 1.7E-06 47.0 5.1 74 354-429 8-97 (132)
398 3ctr_A Poly(A)-specific ribonu 94.3 0.041 1.4E-06 45.2 4.3 53 354-414 7-60 (101)
399 3pq1_A Poly(A) RNA polymerase; 94.1 0.024 8.2E-07 58.9 3.2 60 350-414 50-109 (464)
400 2l08_A Regulator of nonsense t 92.9 0.11 3.9E-06 42.4 4.7 75 353-428 9-93 (97)
401 3d45_A Poly(A)-specific ribonu 78.9 3.6 0.00012 43.0 7.3 54 256-316 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 62.1 13 0.00046 38.6 7.0 54 353-414 440-494 (507)
403 3j21_T 50S ribosomal protein L 38.2 53 0.0018 25.8 5.3 57 355-412 24-81 (86)
404 1vq8_S 50S ribosomal protein L 27.6 74 0.0025 24.9 4.5 56 355-411 23-79 (85)
405 1sfu_A 34L protein; protein/Z- 26.6 14 0.00049 28.5 0.1 37 83-122 9-45 (75)
406 2g0c_A ATP-dependent RNA helic 26.4 1.1E+02 0.0039 22.4 5.3 59 364-429 12-75 (76)
407 4e8u_A Putative uncharacterize 26.2 88 0.003 27.8 5.2 57 258-315 14-82 (172)
408 4e8u_A Putative uncharacterize 24.7 1.1E+02 0.0036 27.3 5.5 56 354-411 13-80 (172)
409 3u5e_X 60S ribosomal protein L 24.4 94 0.0032 26.8 4.9 56 355-411 80-136 (142)
410 1xn9_A 30S ribosomal protein S 23.0 1.5E+02 0.005 24.0 5.5 47 363-410 28-80 (101)
411 2zkr_s 60S ribosomal protein L 22.2 1E+02 0.0035 27.0 4.7 57 355-412 94-151 (156)
412 4a17_R RPL23A, 60S ribosomal p 22.1 1E+02 0.0035 26.8 4.7 56 355-411 88-144 (150)
413 1ywx_A 30S ribosomal protein S 20.7 1.4E+02 0.0049 24.1 5.1 46 363-409 28-79 (102)
414 2v94_A RPS24, 30S ribosomal pr 20.2 1.7E+02 0.0059 23.8 5.5 46 363-409 37-88 (107)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-32 Score=256.11 Aligned_cols=164 Identities=25% Similarity=0.398 Sum_probs=148.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..+||||+|||+++|+++|+++|++||+|.+|+++.|+.+ ++|||||+|.+.++|++|++ +++..+.|++|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4689999999999999999999999999999999998754 58999999999999999998 99999999999999864
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
. ..........+|||+|||+.+|+++|+++|++ ||.|..|+|+++.+.++|||||+|.+.++|.+|+
T Consensus 94 ~------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 94 R------------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp C------------CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHH
T ss_pred c------------cccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHH
Confidence 1 11222334578999999999999999999998 9999999999998888999999999999999999
Q ss_pred H-hCCceeCCeeEEEeecCCC
Q 013503 412 N-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 412 ~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
+ |||..|+|++|+|.++++.
T Consensus 161 ~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHTTCEETTEECEEEECCCH
T ss_pred HHhCCCEECCEEEEEEEcCCC
Confidence 8 9999999999999999763
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-32 Score=240.15 Aligned_cols=161 Identities=21% Similarity=0.337 Sum_probs=145.5
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAI 334 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~ 334 (442)
|+|||+|||+++|+++|+++|++||+|.+|++..++.+ ++|||||+|.+.++|.+|++ ++|..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999999988754 68999999999999999997 99999999999999974322
Q ss_pred CCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH
Q 013503 335 APVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 335 ~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
. .......+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 11223478999999999999999999998 9999999999874 6899999999999999999999
Q ss_pred -hCCceeCCeeEEEeecCC
Q 013503 413 -CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 413 -LnG~~l~Gr~L~V~~Ak~ 430 (442)
|||..++|++|+|.||++
T Consensus 148 ~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HhCCCccCCcEEEEEecCC
Confidence 999999999999999874
No 3
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=2.9e-32 Score=253.94 Aligned_cols=183 Identities=23% Similarity=0.314 Sum_probs=153.2
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
......++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|.+|++ +++..+.|++|.|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 33446889999999999999999999999999999999988643 68999999999999999999 9999999999999
Q ss_pred eccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHH
Q 013503 328 LPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAE 405 (442)
Q Consensus 328 ~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e 405 (442)
.++........ ............++|||+|||..+|+++|+++|++ ||.|..++++.+. +.++|||||+|.+.+
T Consensus 103 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 103 GRPSNIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ECCSCCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred ecCCCccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 88642211000 00000112345589999999999999999999998 9999999999884 688999999999999
Q ss_pred HHHHHHH-hCCceeCCeeEEEeecCCCCCCCCC
Q 013503 406 SAIAALN-CSGVVLGSLPIRVSPSKTPVRPRAP 437 (442)
Q Consensus 406 ~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr~p 437 (442)
+|.+|++ |||..++|+.|+|.++++++.+..+
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~~ 211 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLT 211 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSSCSSTTSC
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecCCCCCCCC
Confidence 9999999 9999999999999999988666543
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=3e-31 Score=243.40 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=147.3
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEec
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~ 329 (442)
.+...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|++|+++++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 3457899999999999999999999999999999999998754 58999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHH
Q 013503 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESA 407 (442)
Q Consensus 330 s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A 407 (442)
+........ .......++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC-------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 753321111 111234479999999999999999999998 9999999999885 68999999999999999
Q ss_pred HHHHHhCCceeCCeeEEEeecCCCCCCCCC
Q 013503 408 IAALNCSGVVLGSLPIRVSPSKTPVRPRAP 437 (442)
Q Consensus 408 ~~Al~LnG~~l~Gr~L~V~~Ak~~~~pr~p 437 (442)
.+|++.+|..++|+.|.|.++.+.......
T Consensus 160 ~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~ 189 (196)
T 1l3k_A 160 DKIVIQKYHTVNGHNCEVRKALSKQEMASA 189 (196)
T ss_dssp HHHHHCSCCEETTEECEEEECC--------
T ss_pred HHHHHhCCcEECCEEEEEEecCChhHhccc
Confidence 999997899999999999999877555443
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=1.8e-30 Score=232.18 Aligned_cols=159 Identities=24% Similarity=0.412 Sum_probs=144.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|+.||+|.+|+++.++.+ ++|||||+|.+.++|++|++ ++|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999999987654 58999999999999999998 99999999999999975
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~ 409 (442)
.... ....++|||+|||..+++++|+++|++ ||.|..+.++++. +.++|||||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 3211 123478999999999999999999998 9999999999875 6889999999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeec
Q 013503 410 ALN-CSGVVLGS--LPIRVSPS 428 (442)
Q Consensus 410 Al~-LnG~~l~G--r~L~V~~A 428 (442)
|++ |||..+.| ++|+|.+|
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 999 99999988 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=2.8e-30 Score=230.07 Aligned_cols=158 Identities=23% Similarity=0.403 Sum_probs=142.8
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
+++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|++|++ ++|..+.|++|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 689999999999999999999999999999999998743 58999999999999999998 999999999999999742
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~A 410 (442)
.. .....++|||+|||..+++++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 11 1123478999999999999999999998 9999999999875 67899999999999999999
Q ss_pred HH-hCCceeCCee--EEEeec
Q 013503 411 LN-CSGVVLGSLP--IRVSPS 428 (442)
Q Consensus 411 l~-LnG~~l~Gr~--L~V~~A 428 (442)
++ |||..+.|+. |+|.||
T Consensus 147 ~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCccCCCccceEEEeC
Confidence 99 9999999964 999886
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.9e-30 Score=233.18 Aligned_cols=161 Identities=23% Similarity=0.324 Sum_probs=141.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hcCcccC---CccEE
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLG---FYPVR 326 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~----skG~AFVeF~s~e~A~kAl~-Lng~~l~---Gr~L~ 326 (442)
..++|||+|||+++|+++|+++|++||+|.+|+++.++.+ ++|||||+|.+.++|++|++ +++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999988754 58999999999999999998 9998875 67888
Q ss_pred EeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHH
Q 013503 327 VLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAE 405 (442)
Q Consensus 327 V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e 405 (442)
+.++..... .....++|||+|||..+|+++|+++|++ ||.|.++.++++. +.++|||||+|.+.+
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 877642211 1123478999999999999999999998 9999999999886 688999999999999
Q ss_pred HHHHHHH-hCCceeC---CeeEEEeecC
Q 013503 406 SAIAALN-CSGVVLG---SLPIRVSPSK 429 (442)
Q Consensus 406 ~A~~Al~-LnG~~l~---Gr~L~V~~Ak 429 (442)
+|.+|++ |||..+. |++|+|.||.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999998 9998776 4999999984
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=9.7e-31 Score=234.07 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=144.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|++|++ ++..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 468999999999999999999999999999999998864 368999999999999999999 35789999999887631
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~A 410 (442)
.......++|||+|||..+|+++|+++|++ ||.|.++.++.+. +.++|||||+|.+.++|.+|
T Consensus 81 --------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 --------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp --------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred --------------hhhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 112234579999999999999999999998 9999999999885 78999999999999999999
Q ss_pred HHhCCceeCCeeEEEeecCCC
Q 013503 411 LNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 411 l~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
++++|..++|++|+|.+|++.
T Consensus 146 ~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHCSEECSSSSCEEEEECCCC
T ss_pred HhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999764
No 9
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.7e-30 Score=254.21 Aligned_cols=235 Identities=20% Similarity=0.217 Sum_probs=175.1
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQG 238 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~g 238 (442)
.|+..+.++|.++|+++|++..+.++++..... +|+.. .|... ... ... -..++. -.|
T Consensus 49 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~------------g~afV-~f~~~---~~A----~~A-~~~~~~~~~g 107 (292)
T 2ghp_A 49 LPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNF------------RFARI-EFARY---DGA----LAA-ITKTHKVVGQ 107 (292)
T ss_dssp ECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSS------------EEEEE-EESSH---HHH----HHH-HTTTTCEETT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc------------EEEEE-EECCH---HHH----HHH-HHhCCcEeCC
Confidence 888999999999999999999988877543211 11111 01110 000 000 001111 111
Q ss_pred CCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-h
Q 013503 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-L 315 (442)
Q Consensus 239 ~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-L 315 (442)
+. .. -.....++|||+|||+.+|+++|+++|+.|| .|..|+++.+..+ ++|||||+|.+.++|.+|++ |
T Consensus 108 ~~------i~--v~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 179 (292)
T 2ghp_A 108 NE------II--VSHLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 179 (292)
T ss_dssp EE------CE--EEECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHH
T ss_pred cE------EE--EEECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 11 11 1123588999999999999999999999999 9999999987743 68999999999999999999 9
Q ss_pred cCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccC---C
Q 013503 316 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDY---H 391 (442)
Q Consensus 316 ng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~---g 391 (442)
+|..+.|++|.|.++........ ........++|||+|||.. +|+++|+++|++ ||.|..|+++++. +
T Consensus 180 ~g~~~~g~~l~v~~a~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 180 NGLKIEGYTLVTKVSNPLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHS 251 (292)
T ss_dssp TTCEETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---
T ss_pred CCCEeCCcEEEEEECCCCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCC
Confidence 99999999999999753321111 0112234589999999999 999999999998 9999999999874 6
Q ss_pred CcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 392 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 392 ~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||||+|.+.++|.+|+.|||..++|++|+|.|+++.
T Consensus 252 ~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCC
T ss_pred CCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCC
Confidence 8899999999999999999999999999999999999865
No 10
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.3e-30 Score=249.77 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=149.1
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|+.||.|..++++.++.+ ++|||||+|.+.++|.+|++ ++|..+.|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 5689999999999999999999999999999999987643 58999999999999999997 99999999999999975
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCC-CHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKV-TQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~v-TeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~ 409 (442)
..... ......++|||+|||..+ |+++|+++|++ ||.|.++.|+.+. |.++|+|||+|.+.++|.+
T Consensus 174 ~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 33211 112345789999999995 99999999998 9999999999876 7889999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCCCC
Q 013503 410 ALN-CSGVVLGSLPIRVSPSKTPVR 433 (442)
Q Consensus 410 Al~-LnG~~l~Gr~L~V~~Ak~~~~ 433 (442)
|++ |||..++|++|+|.++++...
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhCCCccCCeEEEEEEecCCCc
Confidence 999 999999999999999987654
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=4.8e-30 Score=231.90 Aligned_cols=164 Identities=17% Similarity=0.243 Sum_probs=139.6
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-PNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d-~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
.+...++|||+|||+++|+++|+++|..||.+..+.+... ...++|||||+|.+.++|++|++|+|..+.|++|.|.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 3457899999999999999999999999987665222221 123689999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~A 410 (442)
..... ......++|||+|||..+|+++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|
T Consensus 89 ~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A 152 (175)
T 1fje_B 89 KGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKN 152 (175)
T ss_dssp CCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE---CSSSSCCSEEEEECSSHHHHHHH
T ss_pred CCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe---cCCCCCceEEEEEECCHHHHHHH
Confidence 53211 11234579999999999999999999998 9998877 44578999999999999999999
Q ss_pred HH-hCCceeCCeeEEEeecCCC
Q 013503 411 LN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 411 l~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
++ |||..++|+.|+|.|+++.
T Consensus 153 ~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 153 LEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHTEEEETTEEEEEEECSSC
T ss_pred HHHhCCCEECCeEEEEEecCCC
Confidence 99 9999999999999999764
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=3.9e-29 Score=235.14 Aligned_cols=170 Identities=14% Similarity=0.160 Sum_probs=141.0
Q ss_pred CCcEEEEEcCC-CcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDID-QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp-~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+||| ..+|+++|+++|++||.|.+|+++.++ +|||||+|.+.++|++|++ |||..+.|++|.|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 47899999999 899999999999999999999998764 5899999999999999999 999999999999999864
Q ss_pred CCC-CCCCC-----------CC----CCCch--h-----hhcccceeeeeCCCCCCCHHHHHHHhhhcCCce--EEEEEe
Q 013503 333 AIA-PVNPT-----------FL----PRTED--E-----REMCARTIYCTNIDKKVTQADVKLFFESVCGEV--YRLRLL 387 (442)
Q Consensus 333 ~~~-~~~p~-----------~~----p~~~~--~-----~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I--~~v~I~ 387 (442)
... +..+. +. .+... . ...+.++|||+|||+++|+++|+++|++ ||.| .+++++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEE
Confidence 321 11000 00 00000 0 0124578999999999999999999998 9999 899999
Q ss_pred ccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe----eEEEeec
Q 013503 388 GDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL----PIRVSPS 428 (442)
Q Consensus 388 ~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr----~L~V~~A 428 (442)
.+.+..+|+|||+|.+.++|.+|+. |||..+.|. ++.|.++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8877677999999999999999999 999999987 5666654
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=6.7e-29 Score=223.15 Aligned_cols=155 Identities=23% Similarity=0.349 Sum_probs=140.0
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~----G-------~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr 323 (442)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+.++|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46899999999999999999999999 7 7888887654 4899999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEe
Q 013503 324 PVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEF 401 (442)
Q Consensus 324 ~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF 401 (442)
+|.|.++.....+ ...++|||+|||..+|+++|+++|++ ||.|..+.++++. +.++|||||+|
T Consensus 79 ~i~v~~~~~~~~~--------------~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQPL--------------PGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCCC--------------TTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCCC--------------CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEe
Confidence 9999986432111 12478999999999999999999998 9999999999984 78899999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 402 VMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 402 ~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.+.++|.+|++ |||..++|++|+|++|
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999999 9999999999999997
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.3e-28 Score=226.13 Aligned_cols=174 Identities=21% Similarity=0.321 Sum_probs=145.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~----G-------~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr 323 (442)
..++|||+|||+++|+++|+++|+.| | .|.++.+... +|||||+|.+.++|++|+.|+|..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~----~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT----TTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC----CCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 47899999999999999999999999 5 6777777543 5899999999999999999999999999
Q ss_pred cEEEeccCCCCCCCCCCC-----CCC-CchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcce
Q 013503 324 PVRVLPSKTAIAPVNPTF-----LPR-TEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTR 395 (442)
Q Consensus 324 ~L~V~~s~~~~~~~~p~~-----~p~-~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG 395 (442)
+|.|.++..........- .+. .........++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcce
Confidence 999998754322111000 000 01111245689999999999999999999998 9999999999884 68899
Q ss_pred EEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCC
Q 013503 396 IAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVR 433 (442)
Q Consensus 396 ~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~ 433 (442)
||||+|.+.++|.+|++ |||..++|+.|+|.++++...
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999 999999999999999987654
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=2e-28 Score=232.74 Aligned_cols=173 Identities=26% Similarity=0.336 Sum_probs=144.9
Q ss_pred ccCCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||+ ++|+++|+++|+.||.|.+|++..++ +|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 34689999999999 99999999999999999999999886 5899999999999999998 9999999999999987
Q ss_pred CCCCCCCCC------------------CCC-CCCc--hhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEec
Q 013503 331 KTAIAPVNP------------------TFL-PRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLG 388 (442)
Q Consensus 331 ~~~~~~~~p------------------~~~-p~~~--~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~ 388 (442)
......... .+. +... .......++|||+|||..+++++|+++|++ || .|..+++..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~ 186 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQ 186 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEECS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEEE
Confidence 543111100 000 0000 001223589999999999999999999998 99 999999965
Q ss_pred cCCCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeecCCCC
Q 013503 389 DYHHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 432 (442)
Q Consensus 389 d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~-Gr~L~V~~Ak~~~ 432 (442)
+ .+|||||+|.+.++|.+|++ |||..++ |++|+|.|+++++
T Consensus 187 ~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 187 K---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp S---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred C---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 3 36799999999999999999 9999999 9999999998764
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.3e-28 Score=240.85 Aligned_cols=161 Identities=20% Similarity=0.305 Sum_probs=141.1
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
..+...++|||+|||+++|+++|+++|+.||+|.+|+++.+..+++|||||+|.+.++|++|++++|..+.|++|.|.++
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC
Confidence 34567899999999999999999999999999999999998887889999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC-CCcceEEEEEeCCHHHHH
Q 013503 331 KTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY-HHSTRIAFVEFVMAESAI 408 (442)
Q Consensus 331 ~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~ 408 (442)
. .++|||+|||..+++++|+++|++ || .|..|.++.+. +.++|||||+|.+.++|.
T Consensus 116 ~---------------------~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 116 T---------------------ECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDAR 173 (292)
T ss_dssp C---------------------SCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHHH
T ss_pred C---------------------CCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHHH
Confidence 2 378999999999999999999998 99 99999999876 678999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCC
Q 013503 409 AALN-CSGVVLGSLPIRVSPSKTPVR 433 (442)
Q Consensus 409 ~Al~-LnG~~l~Gr~L~V~~Ak~~~~ 433 (442)
+|++ |+|..+.|+.|.|.++.+...
T Consensus 174 ~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 174 YCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHHHHHTTCEETTEECEEEECCCC--
T ss_pred HHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 9999 999999999999999986543
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1e-28 Score=228.01 Aligned_cols=171 Identities=26% Similarity=0.313 Sum_probs=143.7
Q ss_pred CCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+ ++|+++|+++|+.||.|.+|++..++ +|||||+|.+.++|++|++ |+|..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 468999999999 99999999999999999999999876 5899999999999999998 999999999999998754
Q ss_pred CCCCCCC------------------CCCCCC---chhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 013503 333 AIAPVNP------------------TFLPRT---EDEREMCARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY 390 (442)
Q Consensus 333 ~~~~~~p------------------~~~p~~---~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~ 390 (442)
....... .+.+.. ......+.++|||+|||..+++++|+++|++ || .|..+++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQK- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESST-
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeC-
Confidence 3211100 000000 0001223689999999999999999999998 99 9999999754
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeecCCCC
Q 013503 391 HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKTPV 432 (442)
Q Consensus 391 g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~-Gr~L~V~~Ak~~~ 432 (442)
.+|+|||+|.+.++|.+|++ |||..++ |++|+|.|+++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 36799999999999999999 9999999 9999999998764
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=5e-28 Score=235.60 Aligned_cols=173 Identities=23% Similarity=0.342 Sum_probs=143.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~----elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
....++|||+|||+++|+++|+ ++|+.||.|.+|++.. ...++|||||+|.+.++|++|++ |+|..+.|++|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 4468999999999999999976 8999999999999886 33468999999999999999997 9999999999999
Q ss_pred eccCCCCCCC---CCCCC--------------------------------------------------------------
Q 013503 328 LPSKTAIAPV---NPTFL-------------------------------------------------------------- 342 (442)
Q Consensus 328 ~~s~~~~~~~---~p~~~-------------------------------------------------------------- 342 (442)
.+++...... ...+.
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9875432100 00000
Q ss_pred ------------C--------------------CCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC
Q 013503 343 ------------P--------------------RTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY 390 (442)
Q Consensus 343 ------------p--------------------~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~ 390 (442)
+ ..........++|||+|||..+|+++|+++|++ ||.|.+|+++.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecCC
Confidence 0 000011224578999999999999999999998 9999999998654
Q ss_pred CCcceEEEEEeCCHHHHHHHHH-hCCceeC-CeeEEEeecCC
Q 013503 391 HHSTRIAFVEFVMAESAIAALN-CSGVVLG-SLPIRVSPSKT 430 (442)
Q Consensus 391 g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~-Gr~L~V~~Ak~ 430 (442)
+|||||+|.+.++|.+|++ |||..+. |+.|+|.|++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 5799999999999999999 9999999 99999999873
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=1.6e-27 Score=232.18 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=143.2
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
......++|||+|||+++|+++|+++|+.|| |.+|.+. .++|||||+|.+.++|.+|++ ++|..+.|++|.|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~----~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD----KYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE----TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe----cCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 3445789999999999999999999999999 9999883 346899999999999999998 999999999999998
Q ss_pred cCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHH
Q 013503 330 SKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESA 407 (442)
Q Consensus 330 s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A 407 (442)
+. ..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|
T Consensus 92 ~~--------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 92 QP--------------------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp CC--------------------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cC--------------------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 52 1268999999999999999999998 9999999999875 68999999999999999
Q ss_pred HHHHH-hCCceeCCeeEEEeecCCCCCC
Q 013503 408 IAALN-CSGVVLGSLPIRVSPSKTPVRP 434 (442)
Q Consensus 408 ~~Al~-LnG~~l~Gr~L~V~~Ak~~~~p 434 (442)
.+|++ |+|..++|++|+|.++.+...+
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~~~~ 178 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLT 178 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGGGCC
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCCCC
Confidence 99997 9999999999999999776543
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=8.6e-27 Score=225.84 Aligned_cols=154 Identities=27% Similarity=0.367 Sum_probs=140.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....++|||+|||+++|+++|+++|+.||.|.+|++..+ +|||||+|.+.++|.+|+. ++|..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 346789999999999999999999999999999999754 4799999999999999998 99999999999999974
Q ss_pred CCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHH
Q 013503 332 TAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 332 ~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~A 410 (442)
. ..+|||+|||..+|+++|+++|++ ||.|..|.++.+. |.++|||||+|.+.++|.+|
T Consensus 95 ~--------------------~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A 153 (261)
T 3sde_A 95 H--------------------GAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKA 153 (261)
T ss_dssp C--------------------SSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHH
T ss_pred c--------------------CCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHH
Confidence 1 368999999999999999999998 9999999999886 68999999999999999999
Q ss_pred HH-h-CCceeC---CeeEEEeecCCC
Q 013503 411 LN-C-SGVVLG---SLPIRVSPSKTP 431 (442)
Q Consensus 411 l~-L-nG~~l~---Gr~L~V~~Ak~~ 431 (442)
+. | +|..+. +++|.|.++.+.
T Consensus 154 ~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 154 LERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHhcCCeEEecCCCceEEEeecccc
Confidence 99 8 566665 999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=8.9e-22 Score=176.04 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=110.9
Q ss_pred EEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCC
Q 013503 285 DCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDK 363 (442)
Q Consensus 285 ~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~ 363 (442)
.+++..+...++|||||+|.+.++|++|++ +++....+..+.+............. ............++|||+|||+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS-HHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-CCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc-cccccccCCCCCCEEEEeCCCC
Confidence 467777777789999999999999999998 76544333222222211100000000 0000111123458999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCC
Q 013503 364 KVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 434 (442)
Q Consensus 364 ~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~p 434 (442)
.+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|.++++...+
T Consensus 81 ~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 81 RTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999998 9999999999984 7899999999999999999998 9999999999999999876433
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=5.4e-21 Score=163.07 Aligned_cols=110 Identities=20% Similarity=0.357 Sum_probs=74.1
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
....+|||+|||+++|+++|+++|++||.|.+|+++.+.++++|||||+|.+.++|++|++ |+|..+.|++|.|.++..
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3567899999999999999999999999999999999988889999999999999999998 999999999999998753
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHH
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQAD 369 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeed 369 (442)
..... ..........++|||+|||+++|++.
T Consensus 83 ~~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------------
T ss_pred ccccc------cccccccCCCCceEeCCCCCCccccc
Confidence 22111 11111223346899999999999864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=6.5e-20 Score=163.00 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=111.9
Q ss_pred EecCCCCCceEEEEEeCCHHHHHHHHH-h-cCcccCCccEEEeccCCCCCCCCC--CCCCCCchhhhcccceeeeeCCCC
Q 013503 288 ICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPSKTAIAPVNP--TFLPRTEDEREMCARTIYCTNIDK 363 (442)
Q Consensus 288 i~~d~~~skG~AFVeF~s~e~A~kAl~-L-ng~~l~Gr~L~V~~s~~~~~~~~p--~~~p~~~~~~~~~~~tL~V~NLp~ 363 (442)
+..+...-+|+++|+|.+.++|++|++ + +|..+.| ++.+.++......... ..............++|||+|||+
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 333444457999999999999999998 8 9999999 9999987532110000 000011112233458999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 013503 364 KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 364 ~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
.+|+++|+++|++ ||.|.+|+++++ ++|||||+|.+.++|.+|++ |||..+.|++|+|.+++++.
T Consensus 84 ~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 84 NGNKTELERAFGY-YGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCHHHHHHHHH-HSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHh-hCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999998 999999999876 57899999999999999999 99999999999999998764
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=141.50 Aligned_cols=77 Identities=31% Similarity=0.463 Sum_probs=73.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
.++|||+|||+++|+++|+++|++ ||+|.+|+++++. +.++|||||+|.+.++|.+|++ |||..++|++|+|++|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 478999999999999999999998 9999999999876 6899999999999999999998 99999999999999997
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 25
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=3.6e-17 Score=139.31 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=74.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
..+|||+|||+++|+++|+++|++ ||.|.+|+|+++.+.++|||||+|.+.++|.+|++ |+|..++|++|+|.++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 468999999999999999999998 99999999999988899999999999999999998 9999999999999998765
Q ss_pred C
Q 013503 432 V 432 (442)
Q Consensus 432 ~ 432 (442)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.1e-17 Score=146.96 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred eEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 297 RFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 297 G~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
-++|++|.+...+..|++ ++|....|+.- +.... + .......++|||+|||..+|+++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------P---PPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp -------------------------------CCSCC-----------S---CSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------C---CCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 378899999999999998 88876655431 11110 0 11122358999999999999999999999
Q ss_pred hcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCCCC
Q 013503 376 SVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPRAP 437 (442)
Q Consensus 376 ~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr~p 437 (442)
+ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++++...+...
T Consensus 70 ~-~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~~~ 133 (135)
T 2lea_A 70 K-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 133 (135)
T ss_dssp G-GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCTTC
T ss_pred h-cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCccc
Confidence 8 9999999999875 6899999999999999999998 9999999999999999887655443
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=136.13 Aligned_cols=78 Identities=23% Similarity=0.417 Sum_probs=72.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||+|.+|+++.|+.+ ++|||||+|.+.++|++|++ |||..+.|++|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999998754 58999999999999999998 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=136.57 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=73.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEee
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSP 427 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-L-nG~~l~Gr~L~V~~ 427 (442)
+++|||+|||+++|+++|+++|++ || +|.+|+|+++. +.++|||||+|.+.++|.+|++ + ++..++|++|+|.+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 368999999999999999999998 99 89999999886 6899999999999999999998 6 56789999999999
Q ss_pred cCCCCC
Q 013503 428 SKTPVR 433 (442)
Q Consensus 428 Ak~~~~ 433 (442)
|++.+.
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987644
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=131.45 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=79.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3489999999999999999999998 9999999999885 6889999999999999999997 9999999999999999
Q ss_pred CCCCCCCCCCCC
Q 013503 429 KTPVRPRAPRLP 440 (442)
Q Consensus 429 k~~~~pr~pR~~ 440 (442)
++...+....++
T Consensus 86 ~~~~~~~~~~~~ 97 (99)
T 1whw_A 86 TIKKEASQSGPS 97 (99)
T ss_dssp CCCSTTCCCCCC
T ss_pred CCCcccccCCCC
Confidence 988665544443
No 30
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=8.2e-17 Score=133.19 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=81.5
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIA 335 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~ 335 (442)
++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 58999999999999999999999999999999988 56899999999999999999 999999999999999865432
Q ss_pred CCCCCCCCCCchhhhcccceeeeeCCC
Q 013503 336 PVNPTFLPRTEDEREMCARTIYCTNID 362 (442)
Q Consensus 336 ~~~p~~~p~~~~~~~~~~~tL~V~NLp 362 (442)
.... ...........+|||+||+
T Consensus 78 ~~~~----~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRF----DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCC----CSCCCSCCCCSCCCSCCCC
T ss_pred cccC----CCCCccccCCCceecCCCC
Confidence 2111 1111112335789999997
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-16 Score=130.83 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=77.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+.+.++|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 4589999999999999999999998 99999999999987789999999999999999999 999999999999999988
Q ss_pred CCCCCC
Q 013503 431 PVRPRA 436 (442)
Q Consensus 431 ~~~pr~ 436 (442)
+...+.
T Consensus 93 ~~~~~~ 98 (103)
T 2cqi_A 93 PSSQKS 98 (103)
T ss_dssp TTCCCC
T ss_pred Cccccc
Confidence 765443
No 32
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=3.5e-17 Score=145.70 Aligned_cols=153 Identities=14% Similarity=0.235 Sum_probs=107.4
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCCCCC
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSFGQG 238 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~~~g 238 (442)
+.|+..+.++|.++|+++|++..+.++.+......-+++|- .| .... ... ..-. ....-.|
T Consensus 10 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV-----~f------~~~~---~a~----~A~~-~~~~~~g 70 (167)
T 2cjk_A 10 GLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL-----SF------EKPS---SVD----EVVK-TQHILDG 70 (167)
T ss_dssp SCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEE-----EE------SSTH---HHH----HHHH-SCCEETT
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEE-----EE------ccHH---HHH----HHHh-cccccCC
Confidence 47889999999999999999999999887654331111111 11 1100 000 0000 0000111
Q ss_pred CCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhc
Q 013503 239 KRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLA 316 (442)
Q Consensus 239 ~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Ln 316 (442)
+... .............++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|.+|++++
T Consensus 71 ~~i~-v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 71 KVID-PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp EECC-CEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred eEcc-cccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCC
Confidence 1111 11111122334578999999999999999999999999999999998864 46899999999999999999999
Q ss_pred CcccCCccEEEeccC
Q 013503 317 GTMLGFYPVRVLPSK 331 (442)
Q Consensus 317 g~~l~Gr~L~V~~s~ 331 (442)
+..+.|++|.|.++.
T Consensus 150 ~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAE 164 (167)
T ss_dssp EECSSSSCEEEEECC
T ss_pred CEEeCCeEEEEeecC
Confidence 999999999999974
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=130.30 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=76.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC-----CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEE
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRV 425 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g-----~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V 425 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+.. .++|||||+|.+.++|.+|++ |||..+.|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3479999999999999999999998 99999999998653 789999999999999999999 9999999999999
Q ss_pred eecCCCCCCCC
Q 013503 426 SPSKTPVRPRA 436 (442)
Q Consensus 426 ~~Ak~~~~pr~ 436 (442)
.++++...++.
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99988765544
No 34
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=3e-17 Score=133.44 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=68.8
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG--~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.+|||+|||..+|+++|+++|++ || .|.+++++.+. |.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 47999999999999999999998 99 99999999985 7899999999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
.+++.+.+
T Consensus 81 ~~~~~~~~ 88 (90)
T 3p5t_L 81 NKLEHHHH 88 (90)
T ss_dssp --------
T ss_pred CCCccccC
Confidence 88765543
No 35
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=129.79 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=77.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+.+.++|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 4589999999999999999999998 99999999999886789999999999999999999 999999999999999988
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
...+.
T Consensus 93 ~~~~~ 97 (103)
T 2cq3_A 93 RVMTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75543
No 36
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=131.28 Aligned_cols=83 Identities=18% Similarity=0.332 Sum_probs=77.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||+.+|+++|+++|++ ||.|..|.|+.+.+.++|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 4589999999999999999999998 99999999999877899999999999999999999 999999999999999988
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
...++
T Consensus 93 ~~~~~ 97 (103)
T 2d9p_A 93 KEERQ 97 (103)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 75543
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=126.80 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=72.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
.++|||+|||..+++++|+++|++ ||.|.++.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 479999999999999999999998 9999999999874 6899999999999999999999 99999999999999998
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
+.
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 38
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=130.70 Aligned_cols=83 Identities=27% Similarity=0.350 Sum_probs=76.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 4589999999999999999999998 9999999999885 6899999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++...+.
T Consensus 93 ~~~~~~~ 99 (103)
T 2cq0_A 93 KPSTNSG 99 (103)
T ss_dssp SCCCCSC
T ss_pred CCCCCCC
Confidence 8775443
No 39
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=7.2e-18 Score=158.09 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=107.4
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CC
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~ 237 (442)
.+|+..+.++|.++|++||++..+.++.+..+...-+++|-. | ... .... ..-...++. ..
T Consensus 22 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~-----F------~~~---~~A~----~Ai~~~~~~~~~ 83 (213)
T 4f02_A 22 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVN-----F------QQP---ADAE----RALDTMNFDVIK 83 (213)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE-----E------SSH---HHHH----HHHHHHTTCEET
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccce-----e------CCH---HHHH----HHHHHhhhhhcC
Confidence 378999999999999999999999988766543211111111 1 000 0000 000000000 01
Q ss_pred CCCCC-CCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-h
Q 013503 238 GKRRM-NSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L 315 (442)
Q Consensus 238 g~~~~-~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-L 315 (442)
|+... ..............++|||+|||+.+|+++|+++|+.||.|..|+++.|..+++|||||+|.+.++|++|++ |
T Consensus 84 g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 84 GKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 11100 000011112233567899999999999999999999999999999999987789999999999999999998 9
Q ss_pred cCcccCCccEEEeccC
Q 013503 316 AGTMLGFYPVRVLPSK 331 (442)
Q Consensus 316 ng~~l~Gr~L~V~~s~ 331 (442)
||..|+|++|.|.++.
T Consensus 164 ng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCEEEEEEEcC
Confidence 9999999999999874
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=128.28 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=77.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3479999999999999999999998 9999999999885 6889999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
++...+..
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 88765544
No 41
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=133.87 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=74.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
+.++|||+|||+.+++++|+++|++ ||.|.+|.|+.|. ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3479999999999999999999998 9999999999986 6899999999999999999999 9999999999999998
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 42
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.67 E-value=1.3e-16 Score=144.28 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=75.5
Q ss_pred EEeCCHHHHHHHHH-hcCcccC--CccEEEeccCCCCCC-CCCCC--CC---CCchhhhcccceeeeeCCCCCCCHHHHH
Q 013503 301 IEFTDEEGARAALN-LAGTMLG--FYPVRVLPSKTAIAP-VNPTF--LP---RTEDEREMCARTIYCTNIDKKVTQADVK 371 (442)
Q Consensus 301 VeF~s~e~A~kAl~-Lng~~l~--Gr~L~V~~s~~~~~~-~~p~~--~p---~~~~~~~~~~~tL~V~NLp~~vTeedL~ 371 (442)
.+|.+.++|+.|+. +++.... |+.+....+...... ..+.. .+ ..........++|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78999999999998 8887654 665555443211100 00000 00 0001112345789999999999999999
Q ss_pred HHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCC
Q 013503 372 LFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 372 ~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|++|+|.|+++...++
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99998 9999999999874 6889999999999999999999 99999999999999997765443
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=5e-16 Score=131.43 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=77.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4589999999999999999999998 9999999999884 6889999999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
++...++.
T Consensus 93 ~~~~~~~~ 100 (115)
T 2dgo_A 93 TRKPPAPK 100 (115)
T ss_dssp SCCCCCSC
T ss_pred cCCCCCCc
Confidence 87755433
No 44
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=3.4e-16 Score=124.39 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=73.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
.+|||+|||..+++++|+++|++ ||.|.++.++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999998 9999999999884 6889999999999999999999 999999999999999986
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 45
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.67 E-value=8.7e-17 Score=136.13 Aligned_cols=103 Identities=21% Similarity=0.344 Sum_probs=90.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||+.+|+++|+++|+.||.|.+|.+..+.. ++|||||+|.+.++|.+|++ |+|..+.|++|.|.++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4578999999999999999999999999999999987654 47999999999999999999 999999999999999741
Q ss_pred CCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCc
Q 013503 333 AIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGE 380 (442)
Q Consensus 333 ~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~ 380 (442)
. . --++++...++++|.++|++ ||.
T Consensus 85 ~-------------~---------~~~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 85 N-------------R---------AFQKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp H-------------H---------HTTTSCHHHHHHHHHHHHHH-HCC
T ss_pred C-------------h---------hhhhhhHhHhHHHHHHHHHH-hCC
Confidence 1 0 01677888899999999998 883
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2e-16 Score=128.33 Aligned_cols=83 Identities=24% Similarity=0.256 Sum_probs=77.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++++.+.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3479999999999999999999998 99999999998878899999999999999999999 999999999999999988
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
+..++
T Consensus 86 ~~~~~ 90 (92)
T 2dgv_A 86 ASGPS 90 (92)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 47
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=131.02 Aligned_cols=84 Identities=26% Similarity=0.362 Sum_probs=77.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3589999999999999999999998 9999999999875 6789999999999999999998 9999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
++....+.
T Consensus 90 ~~~~~~~~ 97 (102)
T 2cqb_A 90 KPMRIKES 97 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 88755543
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=128.81 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=76.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++|++..+.|++|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3489999999999999999999998 9999999999875 678999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 013503 430 TPVRPR 435 (442)
Q Consensus 430 ~~~~pr 435 (442)
+.....
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 765443
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=3.7e-16 Score=130.00 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=76.5
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCC---eeEEE
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGS---LPIRV 425 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G---r~L~V 425 (442)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.| ++|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 34589999999999999999999998 9999999999886 6889999999999999999999 99999998 99999
Q ss_pred eecCCCCCC
Q 013503 426 SPSKTPVRP 434 (442)
Q Consensus 426 ~~Ak~~~~p 434 (442)
.++++....
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877544
No 50
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=4e-16 Score=132.14 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=76.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4579999999999999999999998 9999999999885 6899999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q 013503 429 KTPVRP 434 (442)
Q Consensus 429 k~~~~p 434 (442)
++....
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 877544
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=128.99 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=77.0
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL-RLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v-~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
..++|||+|||..+|+++|+++|++ ||.|..+ .|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3479999999999999999999998 9999999 999874 6889999999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 013503 428 SKTPVRPRA 436 (442)
Q Consensus 428 Ak~~~~pr~ 436 (442)
+++...+..
T Consensus 83 a~~~~~~~~ 91 (96)
T 1x5t_A 83 AFKKDSKGS 91 (96)
T ss_dssp SCCCCCCCC
T ss_pred ecccCCCCC
Confidence 988765543
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=7e-17 Score=133.68 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=71.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCc--eEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCc----eeCCeeE
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGE--VYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLGSLPI 423 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~--I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~----~l~Gr~L 423 (442)
..||||+|||+.+|+++|+++|++ ||. |.+|++++|+ +.++|||||+|.+.++|.+|++ |||. .++|++|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 478999999999999999999998 994 6799999986 6899999999999999999999 9986 5999999
Q ss_pred EEeecCCC
Q 013503 424 RVSPSKTP 431 (442)
Q Consensus 424 ~V~~Ak~~ 431 (442)
+|+||+.+
T Consensus 88 ~V~~Akss 95 (95)
T 2lkz_A 88 GVDFAKSA 95 (95)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999863
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=128.68 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=75.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||.|..|+++.++..++|||||+|.+.++|++|++ |++..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34679999999999999999999999999999999999887789999999999999999999 99999999999999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=128.15 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=75.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4589999999999999999999998 9999999999987 7889999999999999999998 99999999999999998
Q ss_pred CCCC
Q 013503 430 TPVR 433 (442)
Q Consensus 430 ~~~~ 433 (442)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7643
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.3e-16 Score=129.25 Aligned_cols=80 Identities=29% Similarity=0.408 Sum_probs=75.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||.|.+|++..++.+++|||||+|.+.++|++|++ |++..+.|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34689999999999999999999999999999999999987789999999999999999999 99999999999999986
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 92 ~ 92 (103)
T 2cqi_A 92 T 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=128.22 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=74.5
Q ss_pred cceeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 353 ARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~----~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
.++|||+|||..+++++|+ ++|++ ||.|.+|+|+.+... +|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3789999999999999999 99998 999999999988755 8999999999999999999 999999999999999
Q ss_pred cCCCCCC
Q 013503 428 SKTPVRP 434 (442)
Q Consensus 428 Ak~~~~p 434 (442)
+++...+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876554
No 57
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=3e-16 Score=125.27 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=72.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3479999999999999999999998 9999999998874 6789999999999999999998 9999999999999998
Q ss_pred C
Q 013503 429 K 429 (442)
Q Consensus 429 k 429 (442)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.3e-16 Score=131.13 Aligned_cols=87 Identities=17% Similarity=0.249 Sum_probs=78.9
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+|+++|+++|++ ||.|..|+|+.+. +.++|||||+|.+.++|++|++ +++ .+.|++|+|.+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34589999999999999999999998 9999999999875 6899999999999999999999 898 89999999999
Q ss_pred cCCCCCCCCCCC
Q 013503 428 SKTPVRPRAPRL 439 (442)
Q Consensus 428 Ak~~~~pr~pR~ 439 (442)
+++...++..++
T Consensus 93 a~~~~~~~~~~~ 104 (116)
T 2cqd_A 93 AYLGAKPRSLQT 104 (116)
T ss_dssp STTTCCCCCCCC
T ss_pred cccCCCccccCC
Confidence 988776666554
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=130.47 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=77.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3479999999999999999999998 9999999999875 6789999999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 013503 429 KTPVRPRAP 437 (442)
Q Consensus 429 k~~~~pr~p 437 (442)
++....+..
T Consensus 90 ~~~~~~~~~ 98 (102)
T 1x5s_A 90 GKSSDNRSG 98 (102)
T ss_dssp ECCCCCCCC
T ss_pred CCCCCCCCC
Confidence 887665543
No 60
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=132.81 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=73.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|+++.|+.+ ++|||||+|.+.++|++|++ |||..+.|++|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999998764 69999999999999999998 9999999999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 61
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=130.84 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-h-cCcccCCccEEEecc
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 330 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-L-ng~~l~Gr~L~V~~s 330 (442)
+++|||+|||+++|+++|+++|++|| .|.+|+++.|+.+ ++|||||+|.+.++|++|++ + ++..++|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999988754 69999999999999999998 6 566799999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 62
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=125.47 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=73.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 4589999999999999999999998 9999999999875 6889999999999999999999 9999999999999998
Q ss_pred CC
Q 013503 429 KT 430 (442)
Q Consensus 429 k~ 430 (442)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 63
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=128.87 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=76.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD---YHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d---~g~~rG~AFVeF~s~e~A~~Al~-L-nG~~l~Gr~L~V~ 426 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+ .+.++|||||+|.+.++|.+|++ | ||..+.|++|+|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 4589999999999999999999998 999999999988 47889999999999999999999 9 9999999999999
Q ss_pred ecCCCCCCC
Q 013503 427 PSKTPVRPR 435 (442)
Q Consensus 427 ~Ak~~~~pr 435 (442)
++++.....
T Consensus 93 ~a~~~~~~~ 101 (107)
T 2cph_A 93 WADSEVTVQ 101 (107)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765443
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-16 Score=129.20 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=76.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hC------CceeCCee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CS------GVVLGSLP 422 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-Ln------G~~l~Gr~ 422 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ || |..+.|++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 4589999999999999999999998 9999999999885 5789999999999999999999 99 99999999
Q ss_pred EEEeecCCCCCCC
Q 013503 423 IRVSPSKTPVRPR 435 (442)
Q Consensus 423 L~V~~Ak~~~~pr 435 (442)
|+|.++++.....
T Consensus 93 l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 93 LKVDLAVTRDEAA 105 (111)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEECCCCccCC
Confidence 9999998765443
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=132.66 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=76.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3479999999999999999999998 9999999999986 7889999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 013503 430 TPVRPR 435 (442)
Q Consensus 430 ~~~~pr 435 (442)
++..+.
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 776443
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=128.84 Aligned_cols=79 Identities=28% Similarity=0.369 Sum_probs=74.0
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3579999999999999999999998 9999999999876 6889999999999999999999 99999999999999987
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=5.7e-16 Score=127.03 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=75.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
+++|||+|||..+++++|+++|++ ||.|.++.++.+. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 478999999999999999999998 9999999999885 6889999999999999999998 99999999999999998
Q ss_pred CCCCC
Q 013503 430 TPVRP 434 (442)
Q Consensus 430 ~~~~p 434 (442)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87544
No 68
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=3.1e-16 Score=145.35 Aligned_cols=160 Identities=13% Similarity=0.199 Sum_probs=106.1
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCC-------cccCCCCCCCCCCCCccccccC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNS-------LIFNNHNARNGNVNANAAVRRK 232 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~-------~~~~~~~~~~g~~~g~~~~r~~ 232 (442)
+|+..+.++|.++|++||++..+.++.+.......+++|-. |.... .+.+ .. -.+ +.-.
T Consensus 36 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~-----f~~~~~A~~A~~~l~~---~~---~~g---~~l~ 101 (216)
T 2qfj_A 36 IYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVE-----YEVPEAAQLALEQMNS---VM---LGG---RNIK 101 (216)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEE-----ESSHHHHHHHHHHHSS---CC---CC----CCCE
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEE-----eCCHHHHHHHHHHccC---Ce---eCC---eeEE
Confidence 78889999999999999999999998876433211111111 10000 0000 00 000 0000
Q ss_pred CCCCCCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHH
Q 013503 233 KSFGQGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGAR 310 (442)
Q Consensus 233 ~~~~~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~ 310 (442)
-.+.....................++|||+|||.++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 102 VGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp EECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred EecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 00000000000000111223456789999999999999999999999999999999998643 5899999999999999
Q ss_pred HHHH-hcCcccCCccEEEeccCCC
Q 013503 311 AALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 311 kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
+|++ |+|..|+|++|.|.++...
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSC
T ss_pred HHHHHccCCEeCCcEEEEEEecCC
Confidence 9999 9999999999999998654
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=125.60 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=73.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||+.+++++|+++|++ ||.|.+|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 4589999999999999999999998 9999999999876 6889999999999999999999 99999999999999987
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 70
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.64 E-value=7e-16 Score=124.17 Aligned_cols=79 Identities=32% Similarity=0.516 Sum_probs=74.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEcc
Confidence 3479999999999999999999998 9999999999874 688999999999999999999999999999999999997
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=128.01 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=77.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 4589999999999999999999998 9999999999875 6899999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
++....+.
T Consensus 93 ~~~~~~~~ 100 (105)
T 1x5u_A 93 SAHNKNLS 100 (105)
T ss_dssp TTTSCCCC
T ss_pred CCCCcCCC
Confidence 88765543
No 72
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=129.19 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=75.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 3589999999999999999999998 9999999999875 6889999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q 013503 429 KTPVRP 434 (442)
Q Consensus 429 k~~~~p 434 (442)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 876433
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.1e-16 Score=128.86 Aligned_cols=80 Identities=23% Similarity=0.233 Sum_probs=74.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4579999999999999999999998 9999999999875 6889999999999999999999 9999999999999999
Q ss_pred CCCC
Q 013503 429 KTPV 432 (442)
Q Consensus 429 k~~~ 432 (442)
++..
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7654
No 74
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=7.5e-16 Score=125.43 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=72.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3479999999999999999999998 9999999999875 6789999999999999999998 9999999999999998
Q ss_pred C
Q 013503 429 K 429 (442)
Q Consensus 429 k 429 (442)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=7.1e-16 Score=123.70 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=72.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--C-CcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g-~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
.++|||+|||..+|+++|+++|++ ||.|.++.++.+. + .++|||||+|.+.++|.+|++ |||..++|+.|+|.++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 478999999999999999999998 9999999999886 2 389999999999999999999 9999999999999999
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
.++
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 755
No 76
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=7e-17 Score=144.40 Aligned_cols=156 Identities=17% Similarity=0.203 Sum_probs=102.6
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC--C
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF--G 236 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~--~ 236 (442)
..|+..+.++|.++|+++|++..+.++....... ....+|+.. .|.... ... ......++. .
T Consensus 10 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~--------~~~~g~afV-~f~~~~---~A~----~A~~~l~~~~~~ 73 (175)
T 3nmr_A 10 QVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP--------PQSKGCCFV-TFYTRK---AAL----EAQNALHNMKVL 73 (175)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS--------CEEEEEEEE-EESSHH---HHH----HHHHHHTTTCCC
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC--------CCcceEEEE-EECCHH---HHH----HHHHHhcCcEEc
Confidence 3788899999999999999999998887665320 000111111 010000 000 000000000 0
Q ss_pred --CCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHH
Q 013503 237 --QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAAL 313 (442)
Q Consensus 237 --~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl 313 (442)
.++.................++|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153 (175)
T ss_dssp TTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHH
T ss_pred cCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHH
Confidence 0111000000111122336789999999999999999999999999999999988654 5899999999999999999
Q ss_pred H-hcCcccC---CccEEEecc
Q 013503 314 N-LAGTMLG---FYPVRVLPS 330 (442)
Q Consensus 314 ~-Lng~~l~---Gr~L~V~~s 330 (442)
+ |||..+. |++|.|.++
T Consensus 154 ~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 154 KAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHTTSCCCTTCSSCCEEEEC
T ss_pred HHhcCCcccCCCCCCeEEEec
Confidence 8 9998776 499999886
No 77
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=131.13 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=76.0
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
....++|||+|||..+|+++|+++|++ ||.|..|.++.+.+.++|||||+|.+.++|.+|++ |||..++|++|+|.++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345689999999999999999999998 99999999999987789999999999999999999 9999999999999999
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
++.
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 865
No 78
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=6.2e-16 Score=123.40 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=72.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46899999999999999999999999999999999887554 58999999999999999998 9999999999999986
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=3e-16 Score=127.42 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=67.8
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G--~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
.+|||+|||+++|+++|+++|++|| .|.+|+++.++.+ ++|||||+|.+.++|++|++ |||..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999998653 58999999999999999998 99999999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 80
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=123.45 Aligned_cols=80 Identities=29% Similarity=0.409 Sum_probs=74.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|..|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3678999999999999999999999999999999999864 368999999999999999999 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
...
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=130.41 Aligned_cols=79 Identities=25% Similarity=0.248 Sum_probs=71.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~Gr~L~V~~A 428 (442)
..++|||+|||+++|+++|+++|++ ||+|.+|+|+++ +|||||+|.+.++|.+|++ |+ +..+.|++|+|.+|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 3479999999999999999999999 999999999975 6799999999999999998 76 48999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++....+
T Consensus 90 ~~~~~~~ 96 (105)
T 1sjq_A 90 NHKELKT 96 (105)
T ss_dssp SSSSCCC
T ss_pred CCCCCCc
Confidence 8765443
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.63 E-value=1.6e-15 Score=128.52 Aligned_cols=80 Identities=19% Similarity=0.410 Sum_probs=73.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|++|++ |++..|.|++|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35789999999999999999999999999999999998743 58999999999999999998 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
+..
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=125.01 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=74.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||.++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|+++++..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999999999988643 689999999999999999999999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=1.7e-15 Score=125.78 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=75.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ || |..|.|+++. +.++|||||+|.+.++|.+|+.|||..+.|++|+|.+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 3589999999999999999999998 87 9999999886 689999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 013503 430 TPVRPR 435 (442)
Q Consensus 430 ~~~~pr 435 (442)
+....+
T Consensus 92 ~~~~~~ 97 (103)
T 2dng_A 92 GRKQDK 97 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765443
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=126.88 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=74.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||.|..|++..+...++|||||+|.+.++|++|++ |++..+.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 34688999999999999999999999999999999999844468999999999999999999 99999999999999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 86
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=129.95 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=70.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCC--eeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCc----ccCCcc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ--VVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGT----MLGFYP 324 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~--I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~----~l~Gr~ 324 (442)
..-.||||+|||+++|+++|+++|++||. |.+|++++|+.+ ++|||||+|.+.++|++|++ |||. .++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 35678999999999999999999999995 678999998754 69999999999999999999 9987 489999
Q ss_pred EEEeccC
Q 013503 325 VRVLPSK 331 (442)
Q Consensus 325 L~V~~s~ 331 (442)
|.|.+++
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999975
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.8e-16 Score=129.81 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=73.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||+|.+|+++.++. .++|||||+|.+.++|++|+++++..+.|++|.|.+..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 87 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEch
Confidence 44678999999999999999999999999999999998765 46899999999999999999999999999999999853
No 88
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=125.37 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=72.3
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 36789999999999999999999999999999999988653 68999999999999999998 9999999999999986
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.1e-15 Score=122.83 Aligned_cols=80 Identities=25% Similarity=0.380 Sum_probs=72.4
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
..+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|++|+++++..+.|++|.|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999988653 5899999999999999999988889999999998
Q ss_pred cc
Q 013503 329 PS 330 (442)
Q Consensus 329 ~s 330 (442)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 90
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=9e-16 Score=128.83 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=75.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4589999999999999999999998 9999999999875 6889999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 013503 429 KTPVR 433 (442)
Q Consensus 429 k~~~~ 433 (442)
++...
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 76544
No 91
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=2.1e-15 Score=127.55 Aligned_cols=82 Identities=23% Similarity=0.377 Sum_probs=75.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
....++|||+|||+.+|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|++|++ |+|..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999999998643 58999999999999999998 999999999999999
Q ss_pred cCCCC
Q 013503 330 SKTAI 334 (442)
Q Consensus 330 s~~~~ 334 (442)
+....
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 86443
No 92
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=1e-15 Score=124.07 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=74.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||+++|+++|+++|++||.|..|++..+...++|||||+|.+.++|++|++ |++..+.|++|.|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3678999999999999999999999999999999998766678999999999999999999 999999999999999864
Q ss_pred C
Q 013503 333 A 333 (442)
Q Consensus 333 ~ 333 (442)
.
T Consensus 86 ~ 86 (92)
T 2dgv_A 86 A 86 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=126.26 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=75.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceE-EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCee----E
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVY-RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP----I 423 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~-~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~----L 423 (442)
..++|||+|||..+++++|+++|++ ||.|. .++++++. +.++|||||+|.+.++|++|++ |||..+.|+. |
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3589999999999999999999998 99999 99999885 6899999999999999999999 9999999999 9
Q ss_pred EEeecCCCCC
Q 013503 424 RVSPSKTPVR 433 (442)
Q Consensus 424 ~V~~Ak~~~~ 433 (442)
+|.|+++...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987644
No 94
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1e-15 Score=125.90 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCcEEEEEcCCCcChHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 255 IRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~----elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..++|||+|||+++|+++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|++|++ |||..+.|++|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 56889999999999999999 99999999999999998877 8999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 854
No 95
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=7.5e-16 Score=127.79 Aligned_cols=81 Identities=25% Similarity=0.314 Sum_probs=74.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
....++|||+|||+++|+++|+++|++||.|..|.+..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446899999999999999999999999999999999988753 58999999999999999999 999999999999999
Q ss_pred cCCC
Q 013503 330 SKTA 333 (442)
Q Consensus 330 s~~~ 333 (442)
++..
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 8643
No 96
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=8.1e-16 Score=126.32 Aligned_cols=79 Identities=27% Similarity=0.439 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-----~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
..++|||+|||+++|+++|+++|++||.|..|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 578999999999999999999999999999999998765 358999999999999999999 99999999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
+++..
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 98644
No 97
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.63 E-value=7.4e-16 Score=125.69 Aligned_cols=79 Identities=32% Similarity=0.487 Sum_probs=73.2
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+.+|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 346789999999999999999999999999999999988753 58999999999999999999 9999999999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
+
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 98
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=126.49 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=74.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
....++|||+|||+++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|++|++ |+|..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 446899999999999999999999999999999999988643 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
+..
T Consensus 92 a~~ 94 (103)
T 2cq0_A 92 AKP 94 (103)
T ss_dssp SSC
T ss_pred CCC
Confidence 854
No 99
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=124.76 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=73.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999998864 368999999999999999997 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 100
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1.4e-15 Score=130.28 Aligned_cols=84 Identities=31% Similarity=0.504 Sum_probs=77.1
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
....++|||+|||..+|+++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++|||..++|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 445689999999999999999999998 9999999999874 6889999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 013503 428 SKTPVRP 434 (442)
Q Consensus 428 Ak~~~~p 434 (442)
+++....
T Consensus 112 a~~~~~~ 118 (124)
T 2jwn_A 112 KRTNMPG 118 (124)
T ss_dssp SSCCCSS
T ss_pred CCCCCCC
Confidence 9876443
No 101
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=2.4e-16 Score=164.04 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=105.3
Q ss_pred HHHHhhcCCCeeEEEEec----CCCCC---ceEE--EEEeCCHHHHHHHHH-hcCcccCCccEEEec------cCCCCCC
Q 013503 273 LAALFVGCGQVVDCRICG----DPNSV---LRFA--FIEFTDEEGARAALN-LAGTMLGFYPVRVLP------SKTAIAP 336 (442)
Q Consensus 273 L~elF~~~G~I~~V~i~~----d~~~s---kG~A--FVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~------s~~~~~~ 336 (442)
|.++|.++|+|..|..+. +.... .|++ |+.|.....+..++. ++.....++...... .......
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 789999999998773322 22122 3333 888887665554443 222222111000000 0000000
Q ss_pred CCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-h
Q 013503 337 VNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-C 413 (442)
Q Consensus 337 ~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-L 413 (442)
..+. ..........++|||+|||+.+|+++|.++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+||+ |
T Consensus 89 ~~p~---~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 89 WDPH---NDPNAQGDAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred cCCc---ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 0000 011111234579999999999999999999998 9999999999884 6889999999999999999998 9
Q ss_pred CCceeCCeeEEEeecCCCC
Q 013503 414 SGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 414 nG~~l~Gr~L~V~~Ak~~~ 432 (442)
||..|.|+.|.|.++++..
T Consensus 165 ng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCCEECCEEEEEEEeCCCC
Confidence 9999999999999998654
No 102
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1.4e-15 Score=120.78 Aligned_cols=76 Identities=21% Similarity=0.373 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+.+|||+|||+++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 368999999999999999999999999999999988644 58999999999999999999 99999999999999975
No 103
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=1.4e-15 Score=122.10 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=71.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||+.+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+++++..+.|+.|+|.+|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4589999999999999999999998 9999999999875 68999999999999999999998889999999999986
No 104
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.63 E-value=1.1e-15 Score=127.22 Aligned_cols=82 Identities=27% Similarity=0.412 Sum_probs=75.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCcee---CCeeEEE
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVL---GSLPIRV 425 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l---~Gr~L~V 425 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+ .|++|+|
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4589999999999999999999998 9999999999875 6889999999999999999999 999988 9999999
Q ss_pred eecCCCCCC
Q 013503 426 SPSKTPVRP 434 (442)
Q Consensus 426 ~~Ak~~~~p 434 (442)
.++++....
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999876544
No 105
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=128.36 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=74.7
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|.+
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34589999999999999999999998 9999999999875 6889999999999999999998 999999999999999
Q ss_pred cCCC
Q 013503 428 SKTP 431 (442)
Q Consensus 428 Ak~~ 431 (442)
+++.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 106
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.2e-15 Score=124.38 Aligned_cols=79 Identities=25% Similarity=0.269 Sum_probs=73.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346789999999999999999999999999999999988754 58999999999999999999 999999999999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.9e-16 Score=130.51 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....++|||+|||.++|+++|+++|++||.|.+|++..++..++|||||+|.+.++|++|++ |+|..++|++|.|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 44688999999999999999999999999999999999887789999999999999999999 99999999999999975
No 108
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=128.41 Aligned_cols=82 Identities=23% Similarity=0.293 Sum_probs=75.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVY--------RLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~--------~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
..++|||+|||..+|+++|+++|++ ||.|. .|+|+.+. +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4589999999999999999999998 99999 69999874 6889999999999999999999 99999999
Q ss_pred eeEEEeecCCCCCC
Q 013503 421 LPIRVSPSKTPVRP 434 (442)
Q Consensus 421 r~L~V~~Ak~~~~p 434 (442)
+.|+|.++++....
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999886544
No 109
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=122.01 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||.++|+++|+++|++||.|.+|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5789999999999999999999999999999999988643 58999999999999999999 99999999999999975
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=131.53 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=77.8
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
....++|||+|||..+|+++|+++|++ ||.|.+|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345689999999999999999999998 9999999999885 6789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 013503 427 PSKTPVRPR 435 (442)
Q Consensus 427 ~Ak~~~~pr 435 (442)
++++....+
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 998775443
No 111
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=125.67 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=75.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~---g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ || |..|.|+.+. +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4489999999999999999999998 99 9999999885 67899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++.....
T Consensus 92 ~~~~~~~ 98 (104)
T 1wi8_A 92 DQAQDKD 98 (104)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8765443
No 112
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=1.9e-15 Score=129.82 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=78.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+|.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4589999999999999999999998 9999999999886 6789999999999999999999 99999999999999998
Q ss_pred CCCCCCCCC
Q 013503 430 TPVRPRAPR 438 (442)
Q Consensus 430 ~~~~pr~pR 438 (442)
+...+.++-
T Consensus 113 ~~~~~~~~~ 121 (124)
T 2kt5_A 113 SQIDLEHHH 121 (124)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCCCCc
Confidence 876665543
No 113
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=125.78 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=74.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|..+ +.++|||||+|.+.++|.+|++ ||+..+.|+.|+|.++++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4589999999999999999999998 999999999665 4578999999999999999998 999999999999999988
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
...++
T Consensus 99 ~~~~~ 103 (109)
T 1x4a_A 99 GRGTG 103 (109)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65443
No 114
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=126.11 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=72.1
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||+++|+++|+++|++||.|..|++..+. .++|||||+|.+.++|++|++ |++..|.|++|.|.+++.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 467899999999999999999999999999999997654 368999999999999999997 999999999999999864
Q ss_pred C
Q 013503 333 A 333 (442)
Q Consensus 333 ~ 333 (442)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.62 E-value=2.4e-15 Score=125.07 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=73.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCC---ccEEEe
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGF---YPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~G---r~L~V~ 328 (442)
...++|||+|||+++|+++|+++|+.||.|.+|++..++.. ++|||||+|.+.++|++|++ |+|..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 46899999999999999999999999999999999988743 48999999999999999998 99999988 999999
Q ss_pred ccCC
Q 013503 329 PSKT 332 (442)
Q Consensus 329 ~s~~ 332 (442)
+++.
T Consensus 93 ~a~~ 96 (105)
T 2dnh_A 93 FADT 96 (105)
T ss_dssp ESCS
T ss_pred ECcc
Confidence 9854
No 116
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=2.2e-16 Score=140.42 Aligned_cols=153 Identities=20% Similarity=0.256 Sum_probs=103.3
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CC
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~ 237 (442)
..|+..+.++|.++|+++|++..+.++.........+++|- .| ... .... ..-...++. -.
T Consensus 10 nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV-----~f------~~~---~~A~----~a~~~l~~~~~~ 71 (168)
T 1b7f_A 10 YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFV-----DF------TSE---MDSQ----RAIKVLNGITVR 71 (168)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEE-----EE------SSH---HHHH----HHHHHHTTCEET
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEE-----EE------CCH---HHHH----HHHHhcCCCEeC
Confidence 37888999999999999999999998876543321111111 11 000 0000 000000000 00
Q ss_pred CCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-
Q 013503 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN- 314 (442)
Q Consensus 238 g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~- 314 (442)
|+. ...............++|||+|||..+|+++|+++|++||.|..+++..++.+ ++|||||+|.+.++|.+|++
T Consensus 72 g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 150 (168)
T 1b7f_A 72 NKR-LKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA 150 (168)
T ss_dssp TEE-CEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CcE-EEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 111 00000111112345789999999999999999999999999999999988633 58999999999999999999
Q ss_pred hcCcccCC--ccEEEecc
Q 013503 315 LAGTMLGF--YPVRVLPS 330 (442)
Q Consensus 315 Lng~~l~G--r~L~V~~s 330 (442)
|+|..+.| ++|.|.++
T Consensus 151 l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 151 LNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCEecCCCeEEEEEeC
Confidence 99999988 99999864
No 117
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.8e-15 Score=126.00 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=73.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC-C--CCCceEEEEEeCCHHHHHHHHH-h-cCcccCCccEEE
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD-P--NSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRV 327 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d-~--~~skG~AFVeF~s~e~A~kAl~-L-ng~~l~Gr~L~V 327 (442)
+...++|||+|||+.+|+++|+++|++||.|..|+++.+ + ..++|||||+|.+.++|++|++ | ++..+.|++|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446889999999999999999999999999999999988 3 3468999999999999999999 8 999999999999
Q ss_pred eccCC
Q 013503 328 LPSKT 332 (442)
Q Consensus 328 ~~s~~ 332 (442)
.++..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99864
No 118
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-15 Score=126.81 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
...++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++.++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34589999999999999999999998 9999999999985 68899999999999999999998999999999999999
Q ss_pred CCCCCCCC
Q 013503 429 KTPVRPRA 436 (442)
Q Consensus 429 k~~~~pr~ 436 (442)
++......
T Consensus 104 ~~~~~~~~ 111 (116)
T 1x4b_A 104 VAREESGS 111 (116)
T ss_dssp SSCCCCCC
T ss_pred CCCccCCC
Confidence 87755443
No 119
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=126.08 Aligned_cols=80 Identities=31% Similarity=0.417 Sum_probs=74.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 346799999999999999999999999999999999988643 68999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
+..
T Consensus 92 a~~ 94 (105)
T 1x5u_A 92 ASA 94 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 854
No 120
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.6e-16 Score=128.48 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=72.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+|||+++|+++|+++|++ ||+|.+|+|+++. +.++|||||+|.+.++|.+|++++|..++|+.|.|.+++.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 489999999999999999999998 9999999999886 7899999999999999999999999999999999998643
No 121
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=126.30 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=75.0
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
...++|||+|||..+++++|+++|++ ||.|..|.++.+ +|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 34679999999999999999999998 999999999876 6799999999999999998 99999999999999999
Q ss_pred CCCCCCCC
Q 013503 430 TPVRPRAP 437 (442)
Q Consensus 430 ~~~~pr~p 437 (442)
+...++.+
T Consensus 98 ~~~~~~~~ 105 (109)
T 1x4g_A 98 ESPDMTSG 105 (109)
T ss_dssp CCCSSCCC
T ss_pred CCCCCCCC
Confidence 87665543
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=128.18 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=74.6
Q ss_pred ccceeeeeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccCC-----CcceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 013503 352 CARTIYCTNIDKKVTQADVK---LFFESVCGEVYRLRLLGDYH-----HSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 422 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~---~~F~~~fG~I~~v~I~~d~g-----~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~ 422 (442)
..++|||+|||+.+++++|+ ++|++ ||+|..|.|+++.+ .++|||||+|.+.++|++|++ |||..+.|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 34799999999999999999 99998 99999999998763 567999999999999999999 9999999999
Q ss_pred EEEeecCCCCC
Q 013503 423 IRVSPSKTPVR 433 (442)
Q Consensus 423 L~V~~Ak~~~~ 433 (442)
|+|.++++.+.
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987753
No 123
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.8e-16 Score=139.07 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=102.8
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQG 238 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~g 238 (442)
.|+..+.++|.++|+++|++..+.++....... .++++- .| .....+.. .-...++. -.|
T Consensus 8 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~-~g~afV-----~f------~~~~~a~~-------A~~~l~~~~~~g 68 (166)
T 3md3_A 8 LDKAITEDILKQYFQVGGPIANIKIMIDKNNKN-VNYAFV-----EY------HQSHDANI-------ALQTLNGKQIEN 68 (166)
T ss_dssp EETTCCHHHHHHHHGGGSCEEEEEEECCCC-CC-EEEEEE-----EE------SSHHHHHH-------HHHHHTTCEETT
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCC-CCEEEE-----Ee------CCHHHHHH-------HHHHcCCCccCC
Confidence 678889999999999999999998877654221 011111 11 00000000 00000000 000
Q ss_pred CCCCCC-ccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-
Q 013503 239 KRRMNS-RTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN- 314 (442)
Q Consensus 239 ~~~~~~-r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~- 314 (442)
+...-. ............++|||+|||+.+|+++|+++|++||.|..+.+..++.+ ++|||||+|.+.++|.+|++
T Consensus 69 ~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 69 NIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp EECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 000000 00000122346789999999999999999999999999999999988643 58999999999999999999
Q ss_pred hcCcccCCccEEEeccC
Q 013503 315 LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 315 Lng~~l~Gr~L~V~~s~ 331 (442)
|+|..++|++|.|.+++
T Consensus 149 l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 149 MQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HTTCEETTEECEEEESC
T ss_pred hCCCccCCcEEEEEecC
Confidence 99999999999999974
No 124
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=126.25 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=76.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++.++..|.|+.|+|.+++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 4589999999999999999999998 9999999999985 689999999999999999999889999999999999998
Q ss_pred CCCCCC
Q 013503 430 TPVRPR 435 (442)
Q Consensus 430 ~~~~pr 435 (442)
+....+
T Consensus 94 ~~~~~~ 99 (105)
T 2dh8_A 94 PRGMQP 99 (105)
T ss_dssp CSSCCT
T ss_pred CCCCCC
Confidence 765443
No 125
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.6e-15 Score=125.28 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=73.0
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4589999999999999999999998 9999999999886 6889999999999999999999 99999999999999985
No 126
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=123.91 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=72.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4678899999999999999999999999999999999873 358999999999999999998 99999999999999975
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.7e-15 Score=122.47 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=75.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ ++..++|+.|+|.+++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecC
Confidence 4579999999999999999999998 9999999999985 7899999999999999999999 5789999999999998
Q ss_pred CCCCCCC
Q 013503 430 TPVRPRA 436 (442)
Q Consensus 430 ~~~~pr~ 436 (442)
+...+..
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqg_A 92 SKQSQDS 98 (103)
T ss_dssp TTCCCCC
T ss_pred CCCcCCC
Confidence 8765544
No 128
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=124.78 Aligned_cols=77 Identities=27% Similarity=0.320 Sum_probs=72.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~--------v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
..++|||+|||..+|+++|+++|++ ||.|.. ++++.+. +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3479999999999999999999998 999999 9999875 6899999999999999999998 99999999
Q ss_pred eeEEEeecC
Q 013503 421 LPIRVSPSK 429 (442)
Q Consensus 421 r~L~V~~Ak 429 (442)
+.|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=1.5e-15 Score=126.72 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=72.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||+.+|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 346889999999999999999999999999999999988743 48999999999999999999 9999999999999986
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=125.27 Aligned_cols=84 Identities=24% Similarity=0.314 Sum_probs=76.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCce-eCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVV-LGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~-l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++.||.|.+|.|+.+. +.++|||||+|.+.++|.+|++ |||.. +.|++|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 347999999999999999999999548999999999886 6889999999999999999999 99999 99999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++.....
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 7765443
No 131
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=127.34 Aligned_cols=80 Identities=21% Similarity=0.352 Sum_probs=74.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|++||.|.+|.+..+.. .++|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999999999999873 368999999999999999998 99999999999999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 85 ~~ 86 (116)
T 2fy1_A 85 KP 86 (116)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 132
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=124.47 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=73.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.| +++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 4589999999999999999999998 9987 455553 6889999999999999999999 99999999999999999
Q ss_pred CCCCCCCC
Q 013503 430 TPVRPRAP 437 (442)
Q Consensus 430 ~~~~pr~p 437 (442)
++..++..
T Consensus 90 ~~~~~~~~ 97 (101)
T 2fc9_A 90 PRGSPNSG 97 (101)
T ss_dssp SCCCCCCC
T ss_pred CCCCCCCC
Confidence 88665543
No 133
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=121.07 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=71.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.++ +|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3589999999999999999999998 9999999997 5799999999999999998 999999999999999988
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
...+.
T Consensus 80 ~~~~~ 84 (90)
T 2dnq_A 80 KSKAS 84 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=123.50 Aligned_cols=79 Identities=23% Similarity=0.436 Sum_probs=73.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEE-EEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC-RICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V-~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
...++|||+|||+++|+++|+++|++||.|..| +++.++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 99987543 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
+..
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 854
No 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=125.03 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=73.3
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999987643 68999999999999999997 9999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 136
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.8e-15 Score=124.58 Aligned_cols=79 Identities=23% Similarity=0.255 Sum_probs=71.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h--CCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C--SGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-L--nG~~l~Gr~L~V~~A 428 (442)
+.++|||+|||..+|+++|+++|++ ||.|.+|.++++ +|||||+|.+.++|.+|++ | ++..+.|++|+|.++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 4579999999999999999999998 999999999865 6799999999999999998 6 578999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++....+
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 8765544
No 137
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=121.33 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCcC------hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCc-cEEE
Q 013503 256 RRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-PVRV 327 (442)
Q Consensus 256 ~rtLfV~NLp~~~------Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr-~L~V 327 (442)
.++|||+|||+.+ |+++|+++|++||.|.+|++..+...++|||||+|.+.++|++|++ |||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 8899999999999999999886555679999999999999999999 999999999 8876
No 138
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3.2e-16 Score=126.72 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=70.1
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
++|||+|||..+++++|+++|++ ||.|.++.++.+. +.++|||||+|.+.+ |.+|++ |||..++|++|+|.+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999998 9999999999885 688999999999999 999999 999999999999999988
Q ss_pred CCCCCCC
Q 013503 431 PVRPRAP 437 (442)
Q Consensus 431 ~~~pr~p 437 (442)
...+..+
T Consensus 80 ~~~~~~~ 86 (90)
T 2ki2_A 80 KKSLEHH 86 (90)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 7655443
No 139
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=1.2e-15 Score=126.55 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=72.7
Q ss_pred cCCcEEEEEcCCC------cChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCC-c
Q 013503 254 IIRRTVYVSDIDQ------QVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGF-Y 323 (442)
Q Consensus 254 ~~~rtLfV~NLp~------~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~G-r 323 (442)
...++|||+|||+ ++++++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|++|++ |||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 9999999999999999999999998864 58999999999999999998 99999999 9
Q ss_pred cEEEeccC
Q 013503 324 PVRVLPSK 331 (442)
Q Consensus 324 ~L~V~~s~ 331 (442)
+|.|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999863
No 140
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=128.18 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=69.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hc--CcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Ln--g~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++ ++ +..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446899999999999999999999999999999999986 4899999999999999998 76 4789999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 853
No 141
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=4.8e-16 Score=129.02 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=73.0
Q ss_pred cceeeeeCCCC------CCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC-ee
Q 013503 353 ARTIYCTNIDK------KVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS-LP 422 (442)
Q Consensus 353 ~~tL~V~NLp~------~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G-r~ 422 (442)
.++|||+|||. .+++++|+++|++ ||.|.+|+|+++. ++++|||||+|.+.++|.+|++ |||..+.| ++
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 47999999999 9999999999998 9999999999986 7899999999999999999998 99999999 99
Q ss_pred EEEeecCC
Q 013503 423 IRVSPSKT 430 (442)
Q Consensus 423 L~V~~Ak~ 430 (442)
|+|.++++
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999864
No 142
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.61 E-value=2.6e-15 Score=120.82 Aligned_cols=78 Identities=36% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|+.++|..+.|++|.|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999998864 368999999999999999999999999999999999853
No 143
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.6e-15 Score=127.56 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=72.7
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||.++++++|+++|++ ||.|..|+++.+. +.++|||||+|.+.++|.+|++ |||..++|++|+|.+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34589999999999999999999998 9999999999875 6889999999999999999999 999999999999999
Q ss_pred cC
Q 013503 428 SK 429 (442)
Q Consensus 428 Ak 429 (442)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 144
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=126.10 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=74.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3489999999999999999999998 9999999999884 6889999999999999999998 9999999999999999
Q ss_pred CCCC
Q 013503 429 KTPV 432 (442)
Q Consensus 429 k~~~ 432 (442)
++..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=9.3e-16 Score=119.79 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=69.4
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
+|||+|||+.+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++++|..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999998 9999999999875 68899999999999999999999999999999999986
No 146
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=123.21 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=72.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeE--------EEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLG 321 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~--------V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~ 321 (442)
+...++|||+|||+++|+++|+++|++||.|.. |++..++.+ ++|||||+|.+.++|++|++ |+|..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 456899999999999999999999999999999 999988653 58999999999999999998 9999999
Q ss_pred CccEEEecc
Q 013503 322 FYPVRVLPS 330 (442)
Q Consensus 322 Gr~L~V~~s 330 (442)
|++|.|.++
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999999986
No 147
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=129.64 Aligned_cols=82 Identities=24% Similarity=0.238 Sum_probs=73.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~Gr~L~V~~A 428 (442)
+.++|||+|||+++|+++|+++|++ ||.|.+|.|+++ +|||||+|.+.++|.+|++ |+ +..+.|++|+|.+|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 4589999999999999999999998 999999999975 6799999999999999998 77 47899999999999
Q ss_pred CCCCCCCCCC
Q 013503 429 KTPVRPRAPR 438 (442)
Q Consensus 429 k~~~~pr~pR 438 (442)
++....+...
T Consensus 105 ~~k~~~~~~~ 114 (119)
T 2ad9_A 105 NHKELKTDSS 114 (119)
T ss_dssp SSSSCCCCCC
T ss_pred cCCCCCcccc
Confidence 8776555443
No 148
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=124.60 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=72.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|+.||.|.+|.+..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999988754 58999999999999999999 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 101 ~ 101 (106)
T 1p27_B 101 F 101 (106)
T ss_dssp E
T ss_pred c
Confidence 5
No 149
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=120.74 Aligned_cols=78 Identities=23% Similarity=0.295 Sum_probs=73.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||+|||..+|+++|+++|++ | .|..|+|+++. +.++|||||+|.+.++|.+|++|||..++|+.|+|.++++.
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 479999999999999999999998 8 99999999885 68899999999999999999999999999999999999876
Q ss_pred C
Q 013503 432 V 432 (442)
Q Consensus 432 ~ 432 (442)
+
T Consensus 88 ~ 88 (91)
T 2dgw_A 88 P 88 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=3e-15 Score=122.74 Aligned_cols=77 Identities=34% Similarity=0.466 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
.++|||+|||.++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++ |+|..++|++|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999998864 358999999999999999998 999999999999999853
No 151
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=1.6e-15 Score=130.32 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=76.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 3579999999999999999999998 9999999999884 6889999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++...+.
T Consensus 100 ~~~~~~~ 106 (126)
T 3ex7_B 100 FVRGPPK 106 (126)
T ss_dssp EESSSCC
T ss_pred cCCCCCC
Confidence 7665543
No 152
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2.4e-15 Score=122.62 Aligned_cols=72 Identities=14% Similarity=0.174 Sum_probs=68.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
+..|||+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|.+|++ |||..+.|++|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 468999999999999999999999 99999999975 68899999999999999999 99999999999999984
No 153
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.8e-15 Score=123.34 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|++|++ ||+..+.|++|+|..+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467799999999999999999999999999999976 56899999999999999999 9999999999999986
No 154
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=125.43 Aligned_cols=80 Identities=26% Similarity=0.396 Sum_probs=74.0
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
.+...++|||+|||+.+|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ ++|..+.|++|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456899999999999999999999999999999999988654 58999999999999999998 99999999999999
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
+++
T Consensus 102 ~a~ 104 (108)
T 2jrs_A 102 HVT 104 (108)
T ss_dssp CSC
T ss_pred Ecc
Confidence 975
No 155
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.6e-15 Score=124.54 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=72.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3478999999999999999999998 9999888777764 6789999999999999999998 9999999999999998
Q ss_pred CCCC
Q 013503 429 KTPV 432 (442)
Q Consensus 429 k~~~ 432 (442)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7653
No 156
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=3.9e-15 Score=124.83 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=73.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hc------CcccCCc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LA------GTMLGFY 323 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Ln------g~~l~Gr 323 (442)
+...++|||+|||+++|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|++|++ ++ +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 346789999999999999999999999999999999988753 58999999999999999999 99 9999999
Q ss_pred cEEEeccCC
Q 013503 324 PVRVLPSKT 332 (442)
Q Consensus 324 ~L~V~~s~~ 332 (442)
+|.|.++..
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999853
No 157
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=125.34 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=72.0
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
++|||+|||..+|+++|+++|++ ||.|..|.++.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999998 999999999987 68899999999999999999 99999999999999998765
Q ss_pred CC
Q 013503 433 RP 434 (442)
Q Consensus 433 ~p 434 (442)
..
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 158
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=125.01 Aligned_cols=80 Identities=30% Similarity=0.412 Sum_probs=73.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 36789999999999999999999999999999999987653 68999999999999999998 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
+..
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 159
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=1.3e-15 Score=119.05 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=68.2
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+|||+|||+++|+++|+++|++||+|.+|++..++. .++|||||+|.+.++|++|+++++..+.|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999998864 3689999999999999999999999999999999864
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=3.1e-15 Score=124.58 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=73.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCccc---CCccEE
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTML---GFYPVR 326 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l---~Gr~L~ 326 (442)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|++|++ |++..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 446889999999999999999999999999999999988653 68999999999999999998 999987 899999
Q ss_pred EeccCC
Q 013503 327 VLPSKT 332 (442)
Q Consensus 327 V~~s~~ 332 (442)
|.++..
T Consensus 90 v~~a~~ 95 (106)
T 2dgp_A 90 VKPADS 95 (106)
T ss_dssp EEECCC
T ss_pred EEECCc
Confidence 999854
No 161
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=5.4e-15 Score=131.92 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=76.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999998 9999999999885 6789999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q 013503 429 KTPVRP 434 (442)
Q Consensus 429 k~~~~p 434 (442)
++....
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 162
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.4e-15 Score=119.74 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=72.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.+++ +||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4579999999999999999999998 99999999973 499999999999999999 999999999999999988
Q ss_pred CCCCCCCC
Q 013503 431 PVRPRAPR 438 (442)
Q Consensus 431 ~~~pr~pR 438 (442)
...++.+.
T Consensus 81 ~~~~~~~~ 88 (90)
T 2dnp_A 81 GQKKSGPS 88 (90)
T ss_dssp CCCCCSCC
T ss_pred CCCCCCCC
Confidence 75554443
No 163
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=125.75 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=73.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ +++ .|.|++|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 446899999999999999999999999999999999988643 68999999999999999999 888 89999999999
Q ss_pred cCCC
Q 013503 330 SKTA 333 (442)
Q Consensus 330 s~~~ 333 (442)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 8543
No 164
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=119.42 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=71.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.++ ++||||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4589999999999999999999998 9999999997 3499999999999999998 999999999999999988
Q ss_pred CCCCCC
Q 013503 431 PVRPRA 436 (442)
Q Consensus 431 ~~~pr~ 436 (442)
...+.+
T Consensus 82 ~~~~~~ 87 (92)
T 2dgt_A 82 RLRTAS 87 (92)
T ss_dssp CCSCCC
T ss_pred CCCCCC
Confidence 765544
No 165
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=126.02 Aligned_cols=79 Identities=15% Similarity=0.181 Sum_probs=73.2
Q ss_pred ccceeeeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eE
Q 013503 352 CARTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PI 423 (442)
Q Consensus 352 ~~~tL~V~NLp~~v------TeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-~L 423 (442)
..++|||+|||..+ |+++|+++|++ ||.|..|.|++..|.++|||||+|.+.++|.+|++ |||..+.|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 35799999999999 78999999998 99999999996668999999999999999999999 999999998 99
Q ss_pred EEeecCCC
Q 013503 424 RVSPSKTP 431 (442)
Q Consensus 424 ~V~~Ak~~ 431 (442)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998753
No 166
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=120.56 Aligned_cols=77 Identities=16% Similarity=0.278 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS---VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~---skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
..++|||+|||+++|+++|+++|++||.|.+|.+..+..+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999887743 58999999999999999999 9999999999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 167
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=2.9e-15 Score=130.47 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=74.7
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+|+++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..|.|++|+|.+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34589999999999999999999998 9999999999875 6889999999999999999999 999999999999999
Q ss_pred cCCC
Q 013503 428 SKTP 431 (442)
Q Consensus 428 Ak~~ 431 (442)
+++.
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9764
No 168
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.59 E-value=5.2e-15 Score=124.78 Aligned_cols=82 Identities=20% Similarity=0.199 Sum_probs=72.7
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
....++|||+|||..+|+++|+++|++ ||.|.+|.++.+. +.++|||||+|.+.++|.+|++..+..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 345689999999999999999999998 9999999999985 7899999999999999999999446999999999999
Q ss_pred cCCCC
Q 013503 428 SKTPV 432 (442)
Q Consensus 428 Ak~~~ 432 (442)
+.+..
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98654
No 169
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.1e-15 Score=125.76 Aligned_cols=76 Identities=24% Similarity=0.368 Sum_probs=70.1
Q ss_pred cceeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+|||.. +|+++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++ |||..++|+.|+|.++++
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 479999999999 999999999998 999999999 57899999999999999998 999999999999999986
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
+..++
T Consensus 100 ~~~~~ 104 (110)
T 1wf1_A 100 PKPDR 104 (110)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 55443
No 170
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=127.51 Aligned_cols=79 Identities=30% Similarity=0.439 Sum_probs=73.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||.++|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|++|+.|+|..|.|++|.|.++
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 346789999999999999999999999999999999988753 689999999999999999999999999999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 171
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=5.8e-15 Score=125.42 Aligned_cols=78 Identities=21% Similarity=0.388 Sum_probs=72.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++ |||..++|++|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999998764 368999999999999999999 999999999999988
Q ss_pred c
Q 013503 330 S 330 (442)
Q Consensus 330 s 330 (442)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 6
No 172
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-15 Score=128.94 Aligned_cols=80 Identities=31% Similarity=0.533 Sum_probs=74.7
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
...++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|+.|||..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEec
Confidence 34589999999999999999999998 9999999999876 68899999999999999999999999999999999998
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
++.
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 173
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=126.32 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=69.9
Q ss_pred ccceeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeEEEee
Q 013503 352 CARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSP 427 (442)
Q Consensus 352 ~~~tL~V~NLp~-~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG--~~l~Gr~L~V~~ 427 (442)
+.++|||+|||+ .+|++||+++|++ ||.|.+|.|+++ +|||||+|.+.++|.+|++ ||+ ..+.|++|+|.+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 458999999999 9999999999998 999999999865 4699999999999999998 875 569999999999
Q ss_pred cCCCCCC
Q 013503 428 SKTPVRP 434 (442)
Q Consensus 428 Ak~~~~p 434 (442)
|++....
T Consensus 89 a~~~~~~ 95 (102)
T 1x4d_A 89 SQKYKRI 95 (102)
T ss_dssp ECCCTTS
T ss_pred CCCCCCC
Confidence 9865443
No 174
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=4.5e-16 Score=142.06 Aligned_cols=156 Identities=14% Similarity=0.173 Sum_probs=102.0
Q ss_pred CcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC---CCCCCCccccccCCCCC
Q 013503 160 GDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNAR---NGNVNANAAVRRKKSFG 236 (442)
Q Consensus 160 ~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~---~g~~~g~~~~r~~~~~~ 236 (442)
+|+..+.++|.++|++||++..+.++.+......-+++|-. | .....+. ...+..-.++.-.-.+.
T Consensus 21 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~-----f------~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 21 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT-----Y------ATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE-----E------SSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEE-----e------CCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 78899999999999999999998887765433211111111 1 0000000 00000000000000000
Q ss_pred CCCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH
Q 013503 237 QGKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 237 ~g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~ 314 (442)
..+. ...........++|||+|||+++|+++|+++|+.||.|..|++..+..+ ++|||||+|.+.++|.+|+.
T Consensus 90 ~~~~-----~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 90 VSRE-----DSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp CC----------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred cCcc-----cccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 0000 0000112335689999999999999999999999999999999998643 58999999999999999999
Q ss_pred hcCcccCCccEEEeccC
Q 013503 315 LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 315 Lng~~l~Gr~L~V~~s~ 331 (442)
.++..+.|++|.|.++.
T Consensus 165 ~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 165 QKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CSCCEETTEECEEEECC
T ss_pred hCCcEECCEEEEEEecC
Confidence 88999999999999975
No 175
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=7.2e-15 Score=122.09 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=71.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.++ ++||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 3479999999999999999999998 9999999986 4599999999999999999 999999999999999988
Q ss_pred CCCCCCC
Q 013503 431 PVRPRAP 437 (442)
Q Consensus 431 ~~~pr~p 437 (442)
....+..
T Consensus 83 ~~~~~~~ 89 (103)
T 2dgu_A 83 PDQKRKE 89 (103)
T ss_dssp CCCCCCC
T ss_pred Ccccchh
Confidence 7655443
No 176
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.59 E-value=4.3e-15 Score=124.21 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=68.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCce--eCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVV--LGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~--l~Gr~L~V~~A 428 (442)
++++|||+|||+++|+++|+++|++ ||.|.++.+++ .+|||||+|.+.++|.+|++ |++.. +.|++|+|.+|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 4589999999999999999999998 99999999985 46799999999999999999 88764 88999999999
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
+..
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 764
No 177
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1.9e-15 Score=123.21 Aligned_cols=78 Identities=21% Similarity=0.153 Sum_probs=71.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3479999999999999999999998 9999988887764 6789999999999999999999 9999999999999998
Q ss_pred CC
Q 013503 429 KT 430 (442)
Q Consensus 429 k~ 430 (442)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 178
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=122.28 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=73.1
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCee-EEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCcc----E
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVV-DCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYP----V 325 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~-~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~----L 325 (442)
...++|||+|||+++|+++|+++|++||.|. +|+++.++.+ ++|||||+|.+.++|++|++ |||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3679999999999999999999999999999 9999998754 58999999999999999999 9999999999 9
Q ss_pred EEeccCC
Q 013503 326 RVLPSKT 332 (442)
Q Consensus 326 ~V~~s~~ 332 (442)
+|.+++.
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998753
No 179
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=3.2e-15 Score=130.13 Aligned_cols=79 Identities=27% Similarity=0.250 Sum_probs=73.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ |+|..|.|++|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999999988653 68999999999999999999 999999999999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
+.
T Consensus 123 a~ 124 (129)
T 2kxn_B 123 SI 124 (129)
T ss_dssp CS
T ss_pred ec
Confidence 75
No 180
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.3e-15 Score=127.17 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCcChHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hcCcccCCccE
Q 013503 255 IRRTVYVSDIDQQVTEEQLA---ALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPV 325 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~---elF~~~G~I~~V~i~~d~~-----~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L 325 (442)
..++|||+|||+++|+++|+ ++|++||.|.+|++..+.. .++|||||+|.+.++|++|++ |||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 57889999999999999999 9999999999999998765 357999999999999999999 99999999999
Q ss_pred EEeccCC
Q 013503 326 RVLPSKT 332 (442)
Q Consensus 326 ~V~~s~~ 332 (442)
.|.++..
T Consensus 94 ~V~~a~~ 100 (111)
T 2cpi_A 94 KASLGTT 100 (111)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 9999854
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.59 E-value=7.4e-16 Score=136.46 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=101.9
Q ss_pred CCcchhhHHHHHHHHhccCCcceeccCCCcCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCccccccCCCC-CC
Q 013503 159 GGDFKRDMRELQELFSKLNPMAEEFVPPSLAKTNNNNHGVNGFNGGFFANNSLIFNNHNARNGNVNANAAVRRKKSF-GQ 237 (442)
Q Consensus 159 ~~~~~~~~~~L~elfs~~g~~a~~~vPp~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~~~~g~~~g~~~~r~~~~~-~~ 237 (442)
..|+..+.++|.++|+++|++..+.++.....+..-+++|- .| .... ... ..-..-++. -.
T Consensus 9 nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV-----~f------~~~~---~A~----~a~~~l~~~~~~ 70 (167)
T 1fxl_A 9 YLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV-----NY------IDPK---DAE----KAINTLNGLRLQ 70 (167)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEE-----EE------SSHH---HHH----HHHHHHTTCEET
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEE-----EE------CCHH---HHH----HHHHHcCCCccC
Confidence 37888899999999999999999888776643321011111 11 0000 000 000000000 01
Q ss_pred CCCCCCCccchhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-
Q 013503 238 GKRRMNSRTSLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN- 314 (442)
Q Consensus 238 g~~~~~~r~~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~- 314 (442)
|+. ...............++|||+|||..+|+++|+++|++||.|..+++..+..+ ++|||||+|.+.++|.+|++
T Consensus 71 g~~-l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 71 TKT-IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TEE-CEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred Cce-EEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 111 00000111122345788999999999999999999999999999999988643 58999999999999999999
Q ss_pred hcCcccCCcc--EEEecc
Q 013503 315 LAGTMLGFYP--VRVLPS 330 (442)
Q Consensus 315 Lng~~l~Gr~--L~V~~s 330 (442)
|+|..+.|+. |.|.++
T Consensus 150 l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCccCCCccceEEEeC
Confidence 9999999965 777663
No 182
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-15 Score=123.70 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=73.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEe-ccC--CCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEE
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLL-GDY--HHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRV 425 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~-I~~v~I~-~d~--g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~Gr~L~V 425 (442)
.++|||+|||..+|+++|+++|++ ||. |..+.++ .+. +.++|||||+|.+.++|.+|++ |+ +..+.|+.|+|
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 479999999999999999999998 998 9999998 555 4889999999999999999999 96 59999999999
Q ss_pred eecCCCCCC
Q 013503 426 SPSKTPVRP 434 (442)
Q Consensus 426 ~~Ak~~~~p 434 (442)
.++++...+
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999876554
No 183
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=120.98 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=71.4
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++ |||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3678999999999999999999999999999999998864 368999999999999999999 9999999999988875
No 184
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.2e-15 Score=123.39 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=71.2
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC-----eeEEEe
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS-----LPIRVS 426 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G-----r~L~V~ 426 (442)
.++|||+|||..+|+++|+++|++ ||.|..|.|+.+ |||||+|.+.++|++|++ |||..|.| +.|+|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 479999999999999999999998 999999999877 799999999999999999 99999999 999999
Q ss_pred ecCCCCCC
Q 013503 427 PSKTPVRP 434 (442)
Q Consensus 427 ~Ak~~~~p 434 (442)
++++....
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99886544
No 185
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.9e-15 Score=121.65 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=70.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC--CeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG--SLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~--Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||.|.+|.+..+ +|||||+|.+.++|++|++ |||..+. |++|+|.++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 3479999999999999999999998 999999999864 6799999999999999999 9999999 999999999
Q ss_pred CCCC
Q 013503 429 KTPV 432 (442)
Q Consensus 429 k~~~ 432 (442)
++.+
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 186
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=120.96 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=67.4
Q ss_pred ceeeeeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCe-eEEE
Q 013503 354 RTIYCTNIDKKV------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSL-PIRV 425 (442)
Q Consensus 354 ~tL~V~NLp~~v------TeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-~L~V 425 (442)
++|||+|||..+ |+++|+++|++ ||.|.++.++++.+.++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 78999999998 99999999987678999999999999999999999 999999999 8877
Q ss_pred e
Q 013503 426 S 426 (442)
Q Consensus 426 ~ 426 (442)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 187
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=4.4e-15 Score=121.45 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=72.0
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
...++|||+|||..+|+++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 34589999999999999999999998 9988777 4457889999999999999999999 99999999999999998
Q ss_pred CCCCC
Q 013503 430 TPVRP 434 (442)
Q Consensus 430 ~~~~p 434 (442)
+....
T Consensus 90 ~~~~~ 94 (96)
T 1fjc_A 90 EKGGT 94 (96)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76543
No 188
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.2e-15 Score=121.62 Aligned_cols=78 Identities=22% Similarity=0.398 Sum_probs=72.4
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|++|| |.+|+++.++.+ ++|||||+|.+.++|++|+.|++..+.|++|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 3578999999999999999999999997 999999998754 5899999999999999999999999999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 92 ~ 92 (103)
T 2dng_A 92 G 92 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.58 E-value=2.8e-15 Score=127.59 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=69.9
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+|||+|||+++|+++|+++|++ || +|..+.+..+ .++|||||+|.+.++|++|++ |||..+.|+.|+|.+++.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 478999999999999999999998 99 9999998643 478999999999999999998 999999999999999986
Q ss_pred CC
Q 013503 431 PV 432 (442)
Q Consensus 431 ~~ 432 (442)
++
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 54
No 190
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=119.48 Aligned_cols=77 Identities=26% Similarity=0.411 Sum_probs=70.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVC--GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~f--G~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ | |.|..+.+. +|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4589999999999999999999998 9 999999874 5699999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++....+
T Consensus 87 ~~~~~~~ 93 (99)
T 2cpd_A 87 KPVDKDS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8876543
No 191
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.2e-15 Score=124.82 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=75.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||+++|++||+++|++ ||.+ .|+|+.+. ++++|||||+|.+.++|.+|+++|+..++|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 3479999999999999999999998 9955 99999886 6899999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 013503 431 PVRPRA 436 (442)
Q Consensus 431 ~~~pr~ 436 (442)
+.....
T Consensus 92 ~~~~~~ 97 (102)
T 1wez_A 92 AGTSGS 97 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765543
No 192
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.58 E-value=5e-15 Score=133.25 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=72.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG--~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
..++|||+|||+.+|+++|+++|++ || .|.+|+|+.|. |.++|||||+|.+.++|.+|++ |||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3479999999999999999999998 99 99999999885 7899999999999999999999 99999999999999
Q ss_pred ecCC
Q 013503 427 PSKT 430 (442)
Q Consensus 427 ~Ak~ 430 (442)
++++
T Consensus 133 ~a~~ 136 (156)
T 3n9u_C 133 PATR 136 (156)
T ss_dssp ECCH
T ss_pred EcCC
Confidence 9865
No 193
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.4e-15 Score=122.23 Aligned_cols=81 Identities=25% Similarity=0.377 Sum_probs=73.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhc-CCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcc-cCCccEEEe
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVG-CGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTM-LGFYPVRVL 328 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~-~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~-l~Gr~L~V~ 328 (442)
+...++|||+|||+++|+++|+++|++ ||.|.+|+++.++.. ++|||||+|.+.++|++|++ |++.. +.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 346789999999999999999999999 999999999998733 58999999999999999999 99999 999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
++...
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 98543
No 194
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=124.75 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=70.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC--ceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG--VVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG--~~l~Gr~L~V~~A 428 (442)
+.++|||+|||..+++++|+++|++ ||.|.+|.++++ +|||||+|.+.++|.+|++ |++ ..+.|++|+|.++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 4579999999999999999999998 999999999864 6799999999999999998 765 5699999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
+.....+
T Consensus 89 ~~~~~~~ 95 (104)
T 1wex_A 89 TSKRITR 95 (104)
T ss_dssp SSSSCCC
T ss_pred cCccccC
Confidence 8765443
No 195
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=6.5e-15 Score=122.43 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=72.3
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~---~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|+.|| |.+|+++.++. .++|||||+|.+.++|++|+.|++..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 3578999999999999999999999999 99999998874 3589999999999999999999999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 196
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=121.71 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=71.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ |||..+.|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3479999999999999999999998 9999999999875 6889999999999999999999 9999999999998876
Q ss_pred C
Q 013503 429 K 429 (442)
Q Consensus 429 k 429 (442)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=123.04 Aligned_cols=78 Identities=24% Similarity=0.337 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|++||.|.+|++..++.. ++|||||+|.+.++|++|++ |++..+.|++|.|.+++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 5789999999999999999999999999999999988753 48999999999999999999 999999999999999754
No 198
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=124.84 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=72.1
Q ss_pred ccCCcEEEEEcCCCcC------hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCc-c
Q 013503 253 EIIRRTVYVSDIDQQV------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFY-P 324 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~------Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr-~ 324 (442)
....++|||+|||+.+ |+++|+++|++||.|.+|++....+.++|||||+|.+.++|.+|+. |||..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 8999999999999999999985555578999999999999999999 999999998 9
Q ss_pred EEEeccC
Q 013503 325 VRVLPSK 331 (442)
Q Consensus 325 L~V~~s~ 331 (442)
|.|.++.
T Consensus 92 l~V~~a~ 98 (105)
T 2nlw_A 92 FRVNLFT 98 (105)
T ss_dssp EEEECSC
T ss_pred EEEEEcc
Confidence 9999974
No 199
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=121.14 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=69.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCC-ceeCCeeEEEeec
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGE-VYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSG-VVLGSLPIRVSPS 428 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~-I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG-~~l~Gr~L~V~~A 428 (442)
..++|||+|||..+|+++|+++|++ ||. |..+.+ .++|||||+|.+.++|.+|++ ||| ..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~-----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVL-----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEE-----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEE-----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 3479999999999999999999998 999 666666 357899999999999999999 999 9999999999999
Q ss_pred CCCCCCC
Q 013503 429 KTPVRPR 435 (442)
Q Consensus 429 k~~~~pr 435 (442)
++.....
T Consensus 81 ~~~~~~~ 87 (93)
T 2cqh_A 81 VSKKLRS 87 (93)
T ss_dssp CCCCCCC
T ss_pred cCccccC
Confidence 8765443
No 200
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=2.2e-14 Score=123.16 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=73.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+.+|+++|+++|+.||.|.+|++..++.. ++|||||+|.+.++|++|++ |+|..+.|++|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 46789999999999999999999999999999999988733 58999999999999999999 99999999999999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 113 ~~ 114 (124)
T 2kt5_A 113 SQ 114 (124)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 201
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=4.6e-15 Score=127.11 Aligned_cols=82 Identities=32% Similarity=0.538 Sum_probs=74.8
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
..+...++|||+|||.++|+++|+++|++||.|.+|++..++. .++|||||+|.+.++|++|++|+|..|.|++|.|.
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 3445679999999999999999999999999999999998754 36899999999999999999999999999999999
Q ss_pred ccCC
Q 013503 329 PSKT 332 (442)
Q Consensus 329 ~s~~ 332 (442)
+++.
T Consensus 111 ~a~~ 114 (124)
T 2jwn_A 111 PKRT 114 (124)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9863
No 202
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-15 Score=124.50 Aligned_cols=78 Identities=32% Similarity=0.448 Sum_probs=72.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+.+|+++|+++|+.||.|..|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999988644 58999999999999999998 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 203
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=4.5e-15 Score=124.55 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+.+|+++|+++|+.||.|.+|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999987643 58999999999999999999 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 104 ~ 104 (110)
T 1oo0_B 104 F 104 (110)
T ss_dssp E
T ss_pred c
Confidence 5
No 204
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.57 E-value=5.6e-15 Score=124.53 Aligned_cols=77 Identities=27% Similarity=0.476 Sum_probs=71.1
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
....++|||+|||..+|+++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|++ |||..++|+.|+|.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 445689999999999999999999998 9999999997 6799999999999999999 9999999999999999
Q ss_pred CCCCC
Q 013503 429 KTPVR 433 (442)
Q Consensus 429 k~~~~ 433 (442)
+++..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87643
No 205
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=117.54 Aligned_cols=73 Identities=23% Similarity=0.422 Sum_probs=68.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||.++|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++ |++..+.|++|.|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 468899999999999999999999999999999998 4799999999999999998 999999999999999864
No 206
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=122.63 Aligned_cols=75 Identities=24% Similarity=0.208 Sum_probs=68.7
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcc--cCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTM--LGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~--l~Gr~L~V~~ 329 (442)
...+++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++ +++.. +.|++|.|.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 346889999999999999999999999999999999864 4799999999999999999 88875 7899999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
++
T Consensus 94 S~ 95 (100)
T 3r27_A 94 ST 95 (100)
T ss_dssp CS
T ss_pred cc
Confidence 85
No 207
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=4.6e-15 Score=123.46 Aligned_cols=80 Identities=25% Similarity=0.361 Sum_probs=73.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+++|+++|+++|++||.|.+|+++.++.+ ++|||||+|.+.++|++|++.++..|.|++|.|.++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 446899999999999999999999999999999999998654 589999999999999999988999999999999997
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 93 ~~ 94 (105)
T 2dh8_A 93 TP 94 (105)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 208
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=127.74 Aligned_cols=80 Identities=20% Similarity=0.086 Sum_probs=74.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEV-YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I-~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||+.+|+++|+++|++ ||.| ..|+|+.+. +.++|||||+|.+.++|.+|+++|+..|+|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECC
Confidence 4579999999999999999999998 9999 899999887 689999999999999999999999999999999999986
Q ss_pred CCC
Q 013503 430 TPV 432 (442)
Q Consensus 430 ~~~ 432 (442)
+..
T Consensus 93 ~~~ 95 (114)
T 2cpy_A 93 LED 95 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 209
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=124.28 Aligned_cols=81 Identities=25% Similarity=0.339 Sum_probs=73.8
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCccc
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--------DCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTML 320 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~--------~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l 320 (442)
.+...++|||+|||+++|+++|+++|++||.|. .|+++.++.+ ++|||||+|.+.++|++|++ |+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345689999999999999999999999999999 6999988643 58999999999999999999 999999
Q ss_pred CCccEEEeccCC
Q 013503 321 GFYPVRVLPSKT 332 (442)
Q Consensus 321 ~Gr~L~V~~s~~ 332 (442)
.|++|.|.+++.
T Consensus 91 ~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QGSKLKVSLARK 102 (113)
T ss_dssp TTEECEEECSSC
T ss_pred CCCEEEEEECCC
Confidence 999999999864
No 210
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=121.77 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hc--CcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Ln--g~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++ ++ +..+.|++|.|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 5789999999999999999999999999999999876 4899999999999999998 64 677999999999986
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 90 ~ 90 (101)
T 2cq1_A 90 H 90 (101)
T ss_dssp C
T ss_pred c
Confidence 3
No 211
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9e-15 Score=123.45 Aligned_cols=79 Identities=18% Similarity=0.309 Sum_probs=73.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCcee--------CCe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVL--------GSL 421 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l--------~Gr 421 (442)
..++|||+|||..+|+++|+++|++ ||.|..+.|+.+. +.++|||||+|.+.++|.+|++ |||..+ .++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4589999999999999999999998 9999999999886 6789999999999999999999 999999 688
Q ss_pred eEEEeecCCC
Q 013503 422 PIRVSPSKTP 431 (442)
Q Consensus 422 ~L~V~~Ak~~ 431 (442)
+|+|.|++++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999854
No 212
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=121.41 Aligned_cols=79 Identities=23% Similarity=0.366 Sum_probs=72.8
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..+...++|||+|||.++|+++|+++|++||.|..|++..+ +|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 34557899999999999999999999999999999999987 4799999999999999998 999999999999999
Q ss_pred cCCC
Q 013503 330 SKTA 333 (442)
Q Consensus 330 s~~~ 333 (442)
++..
T Consensus 96 a~~~ 99 (109)
T 1x4g_A 96 GKES 99 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8643
No 213
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=126.71 Aligned_cols=82 Identities=24% Similarity=0.340 Sum_probs=75.3
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
.+...++|||+|||.++|+++|+++|+.||.|.+|+++.++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999999988754 58999999999999999999 99999999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
+++..
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98643
No 214
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=119.51 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=72.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ ++..+.|++|.|.++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 446788999999999999999999999999999999998653 58999999999999999999 577899999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
...
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 215
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.9e-15 Score=125.80 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcC--cccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng--~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++ +++ ..+.|++|.|.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 5789999999999999999999999999999999986 4799999999999999998 774 67999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 106 ~ 106 (119)
T 2ad9_A 106 H 106 (119)
T ss_dssp S
T ss_pred C
Confidence 3
No 216
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=124.72 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=72.3
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~---g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+++++|+++|++ || |.+|+|+.+. ++++|||||+|.+.++|.+|+.|||..++|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34589999999999999999999998 99 9999999874 6889999999999999999999999999999999999
Q ss_pred cCCC
Q 013503 428 SKTP 431 (442)
Q Consensus 428 Ak~~ 431 (442)
+++.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9765
No 217
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=4.5e-15 Score=127.02 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=72.7
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCC---eeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~---I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
....++|||+|||+++|+++|+++|+.||. |..|+++.++.. ++|||||+|.+.++|++|+++++..|+|++|.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 346789999999999999999999999998 899999987654 5899999999999999999999999999999999
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
++.
T Consensus 94 ~a~ 96 (118)
T 2db1_A 94 KSH 96 (118)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
No 218
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.9e-15 Score=123.39 Aligned_cols=74 Identities=31% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCc--ccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGT--MLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~--~l~Gr~L~V~~s 330 (442)
..++|||+|||+ ++|+++|+++|++||.|.+|+++.++ |||||+|.+.++|.+|++ |++. .|.|++|.|.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 578999999999 99999999999999999999998764 699999999999999998 8864 499999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 219
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.1e-15 Score=123.59 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=70.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||+++|+++|+++|++||. .+|+++.++.. ++|||||+|.+.++|++||++++..|.|+.|.|.++..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 35789999999999999999999999995 49999988743 58999999999999999999999999999999998753
No 220
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-15 Score=120.23 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=68.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++ |||..+.|++|.|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4578999999999999999999999999997 666654 456899999999999999998 99999999999999975
No 221
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.56 E-value=3.4e-15 Score=129.80 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=74.6
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCc----eeCC
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYR--LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGV----VLGS 420 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~--v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~----~l~G 420 (442)
....++|||+|||+.+|+++|+++|++ ||.|.. |+|++|. +.++|||||+|.+. +|.+|++ |||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 345689999999999999999999998 999977 9999986 78999999999999 9999999 9999 9999
Q ss_pred eeEEEeecCCCC
Q 013503 421 LPIRVSPSKTPV 432 (442)
Q Consensus 421 r~L~V~~Ak~~~ 432 (442)
+.|+|.++++..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998763
No 222
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.4e-14 Score=122.86 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=73.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|+.||.|..|+++.++.+ ++|||||+|.+.++|++|++.++..|.|++|.|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 45689999999999999999999999999999999998653 6899999999999999999999999999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 105 ~ 105 (116)
T 1x4b_A 105 A 105 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 223
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=122.70 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=69.9
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
..+...++|||+|||+++|+++|+++|+.||.|.+|++..++. .++|||||+|.+.++|++|++..+..+.|++|.|.
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 4455788999999999999999999999999999999999874 36899999999999999999955699999999999
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
++.
T Consensus 100 ~a~ 102 (109)
T 2rs2_A 100 VAF 102 (109)
T ss_dssp ECC
T ss_pred Ecc
Confidence 975
No 224
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.9e-15 Score=117.23 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=69.0
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeec
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPS 428 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~A 428 (442)
++|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|++ ++ ..++|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999998 9999999999875 6889999999999999999999 88 9999999999987
No 225
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.9e-15 Score=125.73 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=72.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCe-eEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQV-VDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I-~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+++|+++|+++|+.||.| ..|+++.++.. ++|||||+|.+.++|++|+++++..|.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3467899999999999999999999999999 88999988743 689999999999999999999999999999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=1.8e-14 Score=118.89 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=69.2
Q ss_pred ccceeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~-~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||. .+++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ |||..++|+.|+|.+++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 458999999998 9999999999998 9999999993 7899999999999999999 99999999999999998
Q ss_pred CCC
Q 013503 430 TPV 432 (442)
Q Consensus 430 ~~~ 432 (442)
+..
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 227
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.5e-14 Score=121.64 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCc--ccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGT--MLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~--~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++ |++. .+.|++|.|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5789999999999999999999999999999999875 4799999999999999998 8764 4899999999986
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 90 ~ 90 (104)
T 1wex_A 90 S 90 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 228
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=120.13 Aligned_cols=76 Identities=25% Similarity=0.266 Sum_probs=70.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....++|||+|||+.+|+++|+++|++||.|..|++..+ +|||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 346789999999999999999999999999999999865 4799999999999999998 99999999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 229
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=6.6e-15 Score=125.97 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=72.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~---I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
..++|||+|||+++|+++|+++|++ ||. |..|+|+.+. ++++|||||+|.+.++|.+|+++||..++|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 3478999999999999999999998 998 8999999876 7899999999999999999999999999999999999
Q ss_pred cCC
Q 013503 428 SKT 430 (442)
Q Consensus 428 Ak~ 430 (442)
+.+
T Consensus 95 a~~ 97 (118)
T 2db1_A 95 SHR 97 (118)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=119.07 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC--CccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG--FYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~--Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++ |++..+. |++|.|.+++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 5689999999999999999999999999999999865 5799999999999999999 9999999 9999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 92 ~ 92 (97)
T 1why_A 92 S 92 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 231
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=4.4e-15 Score=121.05 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|..+.++.++.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999999998888876544 58999999999999999999 99999999999999864
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=117.77 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=71.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|+.| .|.+|+++.+... ++|||||+|.+.++|++|++++|..+.|++|.|.++.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3467899999999999999999999999 9999999988433 5899999999999999999999999999999999975
No 233
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=5.7e-15 Score=120.84 Aligned_cols=80 Identities=26% Similarity=0.374 Sum_probs=72.9
Q ss_pred ccceeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~----~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
..++|||+|||..+++++|+ ++|++ ||.|..|.++. .+.++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45799999999999999999 99998 99999999874 35678899999999999999999 99999999999999
Q ss_pred ecCCCCC
Q 013503 427 PSKTPVR 433 (442)
Q Consensus 427 ~Ak~~~~ 433 (442)
++++...
T Consensus 85 ~a~~~~~ 91 (97)
T 1nu4_A 85 YAKTDSD 91 (97)
T ss_dssp ECSSCCT
T ss_pred EccCCCc
Confidence 9987643
No 234
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=123.42 Aligned_cols=77 Identities=19% Similarity=0.185 Sum_probs=70.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.|++ .+|||||+|.+.++|.+|++ |||..+.|++|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3579999999999999999999998 99999999874 56799999999999999999 999999999999999976
Q ss_pred CCC
Q 013503 431 PVR 433 (442)
Q Consensus 431 ~~~ 433 (442)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 544
No 235
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=131.25 Aligned_cols=77 Identities=25% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G--~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+ ++|||||+|.+.++|++|++ |+|..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999998654 58999999999999999999 999999999999998
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 236
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=3.5e-15 Score=116.78 Aligned_cols=73 Identities=23% Similarity=0.386 Sum_probs=67.8
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
++|||+|||+++|+++|+++|++||+|.+|++..++. .++|||||+|.+.++|++|++ ++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999998864 368999999999999999999 77 9999999999875
No 237
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=123.35 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=71.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
..+|||+|||+++|++||+++|++ | .|.+|.|+.+. |+++|||||+|.+.++|.+|+++|+..++|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 378999999999999999999998 8 89999999876 7899999999999999999999999999999999998854
No 238
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.9e-15 Score=121.82 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeE-EEEecCCC-CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD-CRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~-V~i~~d~~-~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|+.||.|.. |+++.+.. .++|||||+|.+.++|++|++.++..++|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 35789999999999999999999999999987 88887743 36899999999999999999999999999999998874
No 239
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=121.23 Aligned_cols=80 Identities=23% Similarity=0.201 Sum_probs=73.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~-v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
...+|||+|||+.+|+++|+++|++ ||.|.. |.|+.+. ++++|||||+|.+.++|.+|++.++..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 3479999999999999999999998 999987 8888875 789999999999999999999989999999999999987
Q ss_pred CCC
Q 013503 430 TPV 432 (442)
Q Consensus 430 ~~~ 432 (442)
+..
T Consensus 93 ~~~ 95 (104)
T 1wg5_A 93 RAE 95 (104)
T ss_dssp TTT
T ss_pred HHH
Confidence 653
No 240
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.55 E-value=6.4e-15 Score=129.14 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=74.2
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|+.||.|..|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999998764 368999999999999999998 999999999999999
Q ss_pred cCCC
Q 013503 330 SKTA 333 (442)
Q Consensus 330 s~~~ 333 (442)
++..
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 241
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=1.1e-14 Score=125.16 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=73.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||.|.+|.++.++.+ ++|||||+|.+.++|++|++ |+|..|.|++|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 45789999999999999999999999999999999988643 58999999999999999998 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 543
No 242
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.6e-14 Score=120.59 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=71.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCccc--------CC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTML--------GF 322 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l--------~G 322 (442)
+...++|||+|||+++|+++|+++|+.||.|..|+++.++.. ++|||||+|.+.++|++|++ |||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 346789999999999999999999999999999999998733 58999999999999999999 999999 57
Q ss_pred ccEEEeccC
Q 013503 323 YPVRVLPSK 331 (442)
Q Consensus 323 r~L~V~~s~ 331 (442)
++|.|.++.
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778888764
No 243
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.5e-15 Score=123.64 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
..++|||+|||+++|+++|+++|++||.|..|.+.. ++|||||+|.+.++|++|++ |||..+.|++|.|.++...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 468999999999999999999999999999999875 45799999999999999998 9999999999999998643
No 244
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.3e-15 Score=121.02 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=69.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+++++|+++|++ ||.|.++++. .++|||||+|.+.++|.+|++ |||..++|+.|+|.|+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3579999999999999999999998 9999999998 457799999999999999998 999999999999999976
No 245
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=117.94 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=71.0
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+|+++|+++|++ |+ .+.++.+. +.++|||||+|.+.++|.+|++ |||..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34589999999999999999999997 75 55666654 6889999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 013503 428 SKTPVRPR 435 (442)
Q Consensus 428 Ak~~~~pr 435 (442)
+++.....
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 98875543
No 246
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=126.53 Aligned_cols=77 Identities=27% Similarity=0.403 Sum_probs=71.7
Q ss_pred cccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 351 MCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 351 ~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
...++|||+|||..+++++|+++|++ ||.|..++++.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34589999999999999999999998 9999999999875 6889999999999999999998 999999999999998
Q ss_pred c
Q 013503 428 S 428 (442)
Q Consensus 428 A 428 (442)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 247
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.7e-15 Score=120.63 Aligned_cols=75 Identities=24% Similarity=0.247 Sum_probs=69.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++ |+|..++|++|.|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34578999999999999999999999999999999983 45899999999999999998 99999999999999874
No 248
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=122.82 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=71.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I----~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
..++|||+|||..+|+++|+++|++ ||.| ..+.+. .+.++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4589999999999999999999998 9998 455554 56789999999999999999999 99999999999999
Q ss_pred ecCCCCCC
Q 013503 427 PSKTPVRP 434 (442)
Q Consensus 427 ~Ak~~~~p 434 (442)
++++....
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876544
No 249
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.6e-15 Score=117.05 Aligned_cols=73 Identities=15% Similarity=0.264 Sum_probs=69.0
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
+|||+|||..+|+++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+|+++++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999998 9999999999875 68899999999999999999999999999999999875
No 250
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=126.72 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=71.4
Q ss_pred ccceeeeeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVK----LFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~----~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
+.++|||+|||+.+++++|+ ++|++ ||.|.+|.+.. .+.++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 34789999999999999876 69998 99999998864 36789999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 013503 427 PSKTPV 432 (442)
Q Consensus 427 ~Ak~~~ 432 (442)
||++..
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998764
No 251
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.55 E-value=2.6e-15 Score=121.35 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=69.2
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
++|||+|||+++|+++|+++|++||.|.+|++..++. .++|||||+|.+.+ |.+|+. |+|..+.|++|.|.++..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 6899999999999999999999999999999998864 36899999999999 999999 999999999999999854
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.8e-15 Score=120.82 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=70.2
Q ss_pred ccceeeeeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDK-KVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~-~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||. .+|+++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 458999999998 9999999999998 9999999994 6799999999999999999 99999999999999998
Q ss_pred CCCCCCC
Q 013503 430 TPVRPRA 436 (442)
Q Consensus 430 ~~~~pr~ 436 (442)
+...+..
T Consensus 82 ~~~~~~~ 88 (96)
T 2kvi_A 82 SNARPQF 88 (96)
T ss_dssp CCCC---
T ss_pred cCCCCCC
Confidence 7765544
No 253
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=7.8e-15 Score=120.41 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|..+.++.++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 5789999999999999999999999999988777776543 58999999999999999998 99999999999999975
No 254
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=119.68 Aligned_cols=77 Identities=26% Similarity=0.372 Sum_probs=69.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|. +.++.+ .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4579999999999999999999998 99997 666654 568899999999999999998 999999999999999987
Q ss_pred CC
Q 013503 431 PV 432 (442)
Q Consensus 431 ~~ 432 (442)
..
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 255
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-14 Score=126.15 Aligned_cols=76 Identities=30% Similarity=0.424 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
..++|||+|||+.+|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999988643 68999999999999999998 9999999999999864
No 256
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=6.2e-15 Score=129.87 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=72.3
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCC---eeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEec
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLP 329 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~---I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~ 329 (442)
...++|||+|||+++|+++|+++|+.||. |.+|+++.|+.. ++|||||+|.+.++|++|+++++..|+|++|.|.+
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 46789999999999999999999999999 899999988753 58999999999999999999999999999999998
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
+.
T Consensus 122 a~ 123 (136)
T 2hgl_A 122 SH 123 (136)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 257
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=114.37 Aligned_cols=73 Identities=18% Similarity=0.378 Sum_probs=68.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h-CCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C-SGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-L-nG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+++++|+++|++ ||.|..+.++++ +|||||+|.+.++|.+|++ | +|..+.|++|+|.|++
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3479999999999999999999998 999999999864 6799999999999999999 8 9999999999999985
No 258
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=120.93 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC-----ccEEEe
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF-----YPVRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G-----r~L~V~ 328 (442)
..++|||+|||+++|+++|+++|++||.|..|+++.+ |||||+|.+.++|++|++ ||+..|.| ++|.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 5789999999999999999999999999999999987 799999999999999999 99999999 999999
Q ss_pred ccCC
Q 013503 329 PSKT 332 (442)
Q Consensus 329 ~s~~ 332 (442)
++..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9854
No 259
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=2.5e-15 Score=134.26 Aligned_cols=76 Identities=18% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
..++|||+|||+.+|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..++|++|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4788999999999999999999999999999999998643 58999999999999999999 9999999999999986
No 260
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=7.4e-15 Score=125.00 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=70.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+++|+++|+++|++|| .|..+.+..+ .++|||||+|.+.++|++|++ |||..+.|++|.|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34578999999999999999999999999 8999988643 367999999999999999998 9999999999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 261
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=5e-15 Score=122.66 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=69.8
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC---CCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP---NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~---~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
.....++|||+|||+++|+++|+++|+.|| |.+|++..++ ..++|||||+|.+.++|.+|+.|+|..+.|++|.|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345789999999999999999999999999 9999999876 236899999999999999999999999999999999
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
+++
T Consensus 94 ~a~ 96 (100)
T 2j76_E 94 VAD 96 (100)
T ss_dssp ECC
T ss_pred ecc
Confidence 975
No 262
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=1.9e-15 Score=133.65 Aligned_cols=124 Identities=16% Similarity=0.076 Sum_probs=74.1
Q ss_pred eEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCCHHHHHHHhh
Q 013503 297 RFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFE 375 (442)
Q Consensus 297 G~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vTeedL~~~F~ 375 (442)
|+||.+|.-++.+-.++. +... ..|...--.... ..........++|||+|||+++|++||+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~------------~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGD------------SEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCC------------cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 678888888877777665 3322 233222111100 00011123347999999999999999999999
Q ss_pred hcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCCCCCC
Q 013503 376 SVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPR 435 (442)
Q Consensus 376 ~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~~~pr 435 (442)
+ || |..|.|+.+. ++++|||||+|.+.++|++|+++|+..++|+.|+|.++.++....
T Consensus 69 ~-~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~~ 127 (139)
T 2hgn_A 69 P-LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASN 127 (139)
T ss_dssp S-CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC--
T ss_pred h-cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCCC
Confidence 8 99 6799999886 789999999999999999999999999999999999998765543
No 263
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.7e-15 Score=126.60 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=69.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|++||++++..|+|++|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 4578999999999999999999999999998855544333 35899999999999999999999999999999999874
No 264
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=119.39 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCC-eeEEEEe-cCCC--CCceEEEEEeCCHHHHHHHHH-hc--CcccCCccEEE
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRIC-GDPN--SVLRFAFIEFTDEEGARAALN-LA--GTMLGFYPVRV 327 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~-I~~V~i~-~d~~--~skG~AFVeF~s~e~A~kAl~-Ln--g~~l~Gr~L~V 327 (442)
..++|||+|||+++|+++|+++|+.||. |.+|.++ .+.. .++|||||+|.+.++|.+|++ |+ +..+.|++|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999998 5655 368999999999999999999 86 58999999999
Q ss_pred eccCCC
Q 013503 328 LPSKTA 333 (442)
Q Consensus 328 ~~s~~~ 333 (442)
.+++..
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 998643
No 265
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-14 Score=118.16 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=71.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 4479999999999999999999998 999999999854 6799999999999999998 999999999999999987
Q ss_pred CCCC
Q 013503 431 PVRP 434 (442)
Q Consensus 431 ~~~p 434 (442)
....
T Consensus 89 ~~~~ 92 (99)
T 2cpj_A 89 SASL 92 (99)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 266
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.54 E-value=1.4e-14 Score=122.47 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=72.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+|+++|+++|++ ||.|.+|.++.+. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3479999999999999999999998 9999999998764 458999999999999999999 999999999999999975
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 85 ~ 85 (115)
T 3lqv_A 85 N 85 (115)
T ss_dssp H
T ss_pred C
Confidence 4
No 267
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=115.55 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=69.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-h-cCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-L-AGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-L-ng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+++|+++|+++|++||.|..|++..+ +|||||+|.+.++|++|++ | ++..+.|++|.|.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 346789999999999999999999999999999999975 4799999999999999999 8 999999999999886
No 268
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=115.93 Aligned_cols=75 Identities=25% Similarity=0.360 Sum_probs=69.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||.|..|++.+ +||||+|.+.++|++|++ |++..+.|++|.|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 34689999999999999999999999999999999984 499999999999999998 99999999999999985
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 269
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.54 E-value=3e-15 Score=116.75 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=67.7
Q ss_pred EEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 258 TVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 258 tLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
+|||+|||+++|+++|+++|++||+|.+|.+..++.+ ++|||||+|.+.++|++|+++++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999987653 689999999999999999999999999999998763
No 270
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=2.2e-14 Score=128.00 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=74.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
....++|||+|||+++|+++|+++|++||.|..|+++.++.+ ++|||||+|.+.++|++|++ |++..|.|++|.|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346899999999999999999999999999999999998754 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 116 a~~ 118 (156)
T 1h2v_Z 116 DAG 118 (156)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
No 271
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=116.71 Aligned_cols=75 Identities=24% Similarity=0.432 Sum_probs=69.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|||+++|+++|+++|++||.|..|++.+ +||||+|.+.++|++|++ |+|..+.|++|.|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 34678999999999999999999999999999999984 499999999999999999 99999999999999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 272
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2e-14 Score=121.19 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=69.7
Q ss_pred hhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 251 REEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 251 ~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..+...++|||+|||+++|+++|+++|++||.|..|++. +|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345578999999999999999999999999999999998 4899999999999999998 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 100 a~~ 102 (108)
T 2jvo_A 100 SKL 102 (108)
T ss_dssp CSC
T ss_pred ecC
Confidence 853
No 273
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=121.89 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=70.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|+.| .|.+|+|+.|+.+ ++|||||+|.+.++|++|+++++..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35799999999999999999999999 8999999987653 6899999999999999999999999999999998863
No 274
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.53 E-value=2.4e-14 Score=127.55 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=73.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|+.||.|.+|++..++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999999864 369999999999999999998 9999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 148 ~~ 149 (158)
T 2kn4_A 148 RY 149 (158)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 275
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.53 E-value=3.2e-14 Score=117.42 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=68.5
Q ss_pred hccCCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 252 EEIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
.....++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|++|++ |+|..+.|++|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999998 99999999999999999999984 5899999999999999999 999999999999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
++
T Consensus 92 a~ 93 (97)
T 2xnq_A 92 SS 93 (97)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 276
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=123.89 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=72.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQ---VVDCRICGDPN-SVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~---I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
....++|||+|||+++|+++|+++|+.||. |.+|+++.++. .++|||||+|.+.++|++|+++++..++|+.|.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 346889999999999999999999999998 89999998775 36899999999999999999999999999999998
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 277
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.53 E-value=8.9e-15 Score=128.87 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=72.5
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~---I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
.++|||+|||+++|+++|+++|++ ||. |..|+|+++. ++++|||||+|.+.++|.+|+++||..++|+.|+|.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEEC
Confidence 478999999999999999999998 999 8999999876 78999999999999999999999999999999999998
Q ss_pred CC
Q 013503 429 KT 430 (442)
Q Consensus 429 k~ 430 (442)
.+
T Consensus 123 ~~ 124 (136)
T 2hgl_A 123 HR 124 (136)
T ss_dssp CH
T ss_pred Ch
Confidence 54
No 278
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=1.1e-14 Score=120.56 Aligned_cols=79 Identities=18% Similarity=0.363 Sum_probs=73.3
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||..+++++|+++|++ ||.|..|.++.+. +.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4589999999999999999999998 9999999999986 6789999999999999999999 99999999999999865
Q ss_pred CC
Q 013503 431 PV 432 (442)
Q Consensus 431 ~~ 432 (442)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 279
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.2e-14 Score=117.74 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=68.4
Q ss_pred ccCCcEEEEEcCCC-cChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQ-QVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~-~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||+ .+|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 34688999999998 99999999999999999999995 4899999999999999999 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
+..
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 543
No 280
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.3e-14 Score=115.44 Aligned_cols=74 Identities=30% Similarity=0.402 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
..++|||+|||+++|+++|+++|++||.|.+| +.++.+.+ ||||+|.+.++|++|++|+|..+.|++|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 56899999999999999999999999999987 44444444 9999999999999999999999999999999874
No 281
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=5.2e-15 Score=122.26 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=71.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..++|||+|||..+|+++|+++|++ ||.|.. .++.+. +.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4579999999999999999999998 999888 555553 688999999999999999999999999999999999998
Q ss_pred CCCC
Q 013503 430 TPVR 433 (442)
Q Consensus 430 ~~~~ 433 (442)
+...
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 282
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=122.81 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=70.4
Q ss_pred hcccceeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC--CceeCCeeEEE
Q 013503 350 EMCARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS--GVVLGSLPIRV 425 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln--G~~l~Gr~L~V 425 (442)
..+.++|||+|||++ +|+++|+++|++ ||.|.+|.|++ ++|||||+|.+.++|.+|++ |+ +..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 335689999999998 999999999998 99999999974 46799999999999999998 75 56799999999
Q ss_pred eecCCCCCC
Q 013503 426 SPSKTPVRP 434 (442)
Q Consensus 426 ~~Ak~~~~p 434 (442)
.+|+.....
T Consensus 97 ~~a~~~~~~ 105 (112)
T 1x4f_A 97 DLSEKYKKL 105 (112)
T ss_dssp EEECSCSSS
T ss_pred EECcccccc
Confidence 999765433
No 283
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=8e-14 Score=114.77 Aligned_cols=73 Identities=26% Similarity=0.409 Sum_probs=67.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGC--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~--G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++ |+|..+.|++|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 467899999999999999999999999 999999875 3799999999999999999 9999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 87 ~~ 88 (99)
T 2cpd_A 87 KP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 284
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=116.84 Aligned_cols=78 Identities=23% Similarity=0.278 Sum_probs=68.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP-NSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~-~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
+...++|||+|||+++|+++|+++|++||.| +++.+. ..++|||||+|.+.++|++|++ |++..+.|++|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3468999999999999999999999999987 555553 3368999999999999999999 9999999999999998
Q ss_pred CCC
Q 013503 331 KTA 333 (442)
Q Consensus 331 ~~~ 333 (442)
+..
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 285
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.51 E-value=4.9e-14 Score=113.82 Aligned_cols=75 Identities=16% Similarity=0.169 Sum_probs=69.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.++|||+|||+.+++++|+++|++ | .|..+++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 478999999999999999999998 8 99999985 678899999999999999999 9999999999999999776
Q ss_pred CC
Q 013503 432 VR 433 (442)
Q Consensus 432 ~~ 433 (442)
..
T Consensus 79 ~~ 80 (88)
T 1wg1_A 79 AL 80 (88)
T ss_dssp CC
T ss_pred ce
Confidence 43
No 286
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=118.59 Aligned_cols=78 Identities=24% Similarity=0.309 Sum_probs=69.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I----~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
...++|||+|||+++|+++|+++|+.||.| ..+++. ...++|||||+|.+.++|++|++ |+|..+.|++|.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 357899999999999999999999999998 555555 34467999999999999999998 99999999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
++...
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 98643
No 287
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.51 E-value=5.7e-15 Score=123.89 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=73.4
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGE---VYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSP 427 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~---I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~ 427 (442)
...+|||+|||+++|+++|+++|++ ||. |..|.|+.+. ++++|||||+|.+.++|.+|+++|+..++|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 3478999999999999999999998 998 8999999876 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 013503 428 SKTP 431 (442)
Q Consensus 428 Ak~~ 431 (442)
+.+.
T Consensus 89 a~~~ 92 (107)
T 2lmi_A 89 INNE 92 (107)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8753
No 288
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=3.3e-14 Score=126.03 Aligned_cols=76 Identities=28% Similarity=0.341 Sum_probs=71.3
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
....++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 346789999999999999999999999999999999987 46899999999999999999 99999999999999975
No 289
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.4e-14 Score=123.67 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCCcChHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 255 IRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~----elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..++|||+|||+.+++++|+ ++|++||.|.+|.+..+ ..++|||||+|.+.++|..|++ |||..+.|++|.|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 47899999999999999876 69999999999988643 3468999999999999999998 999999999999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
++
T Consensus 107 a~ 108 (127)
T 2a3j_A 107 SE 108 (127)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 290
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=9.8e-15 Score=126.86 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=71.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeE--EEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCc----ccCCcc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--CRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGT----MLGFYP 324 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~--V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~----~l~Gr~ 324 (442)
...++|||+|||+++|+++|+++|++||.|.. |+++.|+.+ ++|||||+|.+. +|.+|+. |+|. .+.|++
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999976 999998844 689999999999 9999999 9999 999999
Q ss_pred EEEeccCC
Q 013503 325 VRVLPSKT 332 (442)
Q Consensus 325 L~V~~s~~ 332 (442)
|.|.+++.
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99999854
No 291
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.51 E-value=1e-13 Score=127.18 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=73.6
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
....++|||+|||+.+|+++|+++|+.||.|..|.+..+.. .++|||||+|.+.++|++|++ |+|..|.|++|.|.++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999998873 368999999999999999999 9999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 165 ~~ 166 (177)
T 2f3j_A 165 AS 166 (177)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 292
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.51 E-value=4.2e-14 Score=117.43 Aligned_cols=73 Identities=25% Similarity=0.419 Sum_probs=68.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKTA 333 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~~ 333 (442)
..++|||+|||+++|+++|+++|++||.|..|++.+ +||||+|.+.++|++|++ |++..|.|++|.|.++...
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999873 599999999999999999 9999999999999998643
No 293
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=9.1e-14 Score=113.48 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=67.0
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPV 432 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~~ 432 (442)
.++|||+|||..+|+++|+++|++ ||.|..| +.+....+ ||||+|.+.++|.+|++|||..++|+.|+|.++.+..
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcCC
Confidence 479999999999999999999998 9999998 33432223 9999999999999999999999999999999987554
No 294
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=1.7e-13 Score=127.35 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=91.4
Q ss_pred CHHHHHHHHH-h--cCcccCCccEEEeccCCCCCCCCCCCCCCCc--hhhhcccceeeeeCCCCCCCHHHHHHHhhhcCC
Q 013503 305 DEEGARAALN-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRTE--DEREMCARTIYCTNIDKKVTQADVKLFFESVCG 379 (442)
Q Consensus 305 s~e~A~kAl~-L--ng~~l~Gr~L~V~~s~~~~~~~~p~~~p~~~--~~~~~~~~tL~V~NLp~~vTeedL~~~F~~~fG 379 (442)
+.+.+..|+. . ....+.+....|..... .+ .|... .......++|||+|||+++|+++|+++|++ ||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~--~p-----~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS--KP-----LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT--SC-----CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc--CC-----CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CC
Confidence 6677888887 5 44455665555555311 01 11111 112335689999999999999999999998 99
Q ss_pred ceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 380 EVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 380 ~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
.|..|+|+++. +.++|||||+|.+.++|.+|+++.+..++|++|.|.+++.-
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 99999999876 68999999999999999999995456999999999998754
No 295
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=2.5e-14 Score=130.69 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=73.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+.+|+++|+++|++||.|..|++..++.+ ++|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999999988643 58999999999999999999 999999999999999
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
+.
T Consensus 191 a~ 192 (198)
T 2yh0_A 191 AS 192 (198)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 296
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1.6e-14 Score=118.19 Aligned_cols=78 Identities=23% Similarity=0.412 Sum_probs=70.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEE
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLA----ALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRV 327 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~----elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V 327 (442)
....++|||+|||+++|+++|+ ++|++||.|..|.+... ..++|||||+|.+.++|++|++ |+|..+.|++|.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467899999999999999999 99999999999998742 2346899999999999999999 9999999999999
Q ss_pred eccC
Q 013503 328 LPSK 331 (442)
Q Consensus 328 ~~s~ 331 (442)
.+++
T Consensus 84 ~~a~ 87 (97)
T 1nu4_A 84 QYAK 87 (97)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9975
No 297
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=126.87 Aligned_cols=76 Identities=32% Similarity=0.317 Sum_probs=70.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC-CccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr~L~V~~s 330 (442)
...++|||+|||..+|+++|+++|++|| .|..|++..+. +|||||+|.+.++|.+|++ |+|..+. |++|.|.++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 3578999999999999999999999999 99999997654 5899999999999999999 9999999 999999997
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 195 ~~ 196 (198)
T 1qm9_A 195 KS 196 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 298
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-13 Score=112.66 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=68.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|| .+|+++|+++|++ ||.|..|.|. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3479999996 8999999999998 9999999995 567799999999999999998 999999999999999987
Q ss_pred CCCC
Q 013503 431 PVRP 434 (442)
Q Consensus 431 ~~~p 434 (442)
....
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 299
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.9e-15 Score=125.54 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=70.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEecc--CCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGD--YHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d--~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
...+|||+|||+.+|+++|+++|++ ||.|..+.++.+ .+.++|||||+|.+.++|.+|++|||..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3479999999999999999999998 999988544443 3789999999999999999999999999999999999986
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
+
T Consensus 103 ~ 103 (124)
T 1wel_A 103 K 103 (124)
T ss_dssp H
T ss_pred H
Confidence 5
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=116.67 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=67.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+.+|+++|+++|+.||.|..+ .....++|||||+|.+.++|++|++ |+|..+.|++|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 467899999999999999999999999988766 3334468999999999999999999 99999999999999975
No 301
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=125.54 Aligned_cols=79 Identities=25% Similarity=0.319 Sum_probs=70.1
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEE--------EEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRL--------RLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP 422 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v--------~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~ 422 (442)
..++|||+|||+.+|+++|+++|++ ||.|..+ .+. ..+.++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3478999999999999999999998 9998764 222 347889999999999999999999 9999999999
Q ss_pred EEEeecCCCC
Q 013503 423 IRVSPSKTPV 432 (442)
Q Consensus 423 L~V~~Ak~~~ 432 (442)
|+|.++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 302
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.49 E-value=2.7e-14 Score=124.25 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=69.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCee--EEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVV--DCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~--~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|+.+ ++|||||+|.+.++|++|+++++..|+|++|.|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 457889999999999999999999999 677 8999987654 699999999999999999998889999999999886
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 303
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=3.3e-14 Score=135.60 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=72.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCG--EVYRLRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG--~I~~v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
..++|||+|||+.+|+++|+++|++ || .|.+|+|+++. ++++|||||+|.+.++|.+||+ |||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 3578999999999999999999998 99 99999999985 6899999999999999999999 99999999999999
Q ss_pred ecCC
Q 013503 427 PSKT 430 (442)
Q Consensus 427 ~Ak~ 430 (442)
++++
T Consensus 146 ~a~~ 149 (229)
T 3q2s_C 146 PVNK 149 (229)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 9864
No 304
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.49 E-value=9.8e-14 Score=131.27 Aligned_cols=76 Identities=32% Similarity=0.317 Sum_probs=69.9
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC-CccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCG-QVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G-~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr~L~V~~s 330 (442)
...++|||+|||..+|+++|+++|++|| .|..|++..+. +|||||+|.+.++|.+|++ |+|..+. |++|.|.++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 3579999999999999999999999999 99999997643 4899999999999999999 9999999 999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 305
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4.8e-14 Score=118.49 Aligned_cols=72 Identities=22% Similarity=0.475 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCCc-ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~-~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||++ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|++|++ |++..+.|++|.|.++..
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4689999999999 999999999999999999999 35899999999999999997 999999999999999853
No 306
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.6e-14 Score=114.35 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEE-EecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCR-ICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~-i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|++||.|.+|+ ++.++.+ |.|||+|.+.++|++|++ |+|..+.|++|.|.++..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 568899999999999999999999999999994 7777654 459999999999999998 999999999999999753
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=8.7e-14 Score=113.65 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=69.3
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEE-EeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLR-LLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~-I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+|||+.+|+++|+++|++ ||.|..++ ++.+.. .|.|||+|.+.++|.+|++ |||..+.|++|+|.++++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 478999999999999999999998 99999994 777654 2349999999999999999 999999999999999987
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 308
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=4.9e-14 Score=113.78 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|++| .|.+|++. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46889999999999999999999999 99999984 457899999999999999999 999999999999999753
No 309
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-15 Score=127.31 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=74.6
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYR--------LRLLGDY--HHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~--------v~I~~d~--g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
..++|||+|||..+++++|+++|++ ||.|.. |.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 4579999999999999999999998 999998 8888874 6889999999999999999999 99999999
Q ss_pred eeEEEeecCCCCC
Q 013503 421 LPIRVSPSKTPVR 433 (442)
Q Consensus 421 r~L~V~~Ak~~~~ 433 (442)
++|+|.++++...
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999987643
No 310
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=119.87 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=68.5
Q ss_pred ccceeee--eCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee-----CCeeE
Q 013503 352 CARTIYC--TNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL-----GSLPI 423 (442)
Q Consensus 352 ~~~tL~V--~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l-----~Gr~L 423 (442)
+.++||| +||+..+|+++|+++|++ ||.|.+|.++.+ +|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4578999 669999999999999998 999999988753 6799999999999999999 999998 79999
Q ss_pred EEeecCCCC
Q 013503 424 RVSPSKTPV 432 (442)
Q Consensus 424 ~V~~Ak~~~ 432 (442)
.|.+++.-+
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999997543
No 311
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=123.87 Aligned_cols=78 Identities=22% Similarity=0.150 Sum_probs=71.2
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEV----YRLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I----~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~ 426 (442)
...+|||+|||+++|++||+++|++ ||.| ..|.|+.+. ++++|||||+|.+.++|.+|++.|+..++|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3479999999999999999999998 9875 689998875 789999999999999999999999999999999999
Q ss_pred ecCC
Q 013503 427 PSKT 430 (442)
Q Consensus 427 ~Ak~ 430 (442)
.+.+
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 312
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=115.40 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=66.6
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcC-cccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQ-VVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG-TMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~-I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng-~~l~Gr~L~V~~s 330 (442)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++ ||| ..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35789999999999999999999999999 6666663 35899999999999999998 999 9999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 81 ~~ 82 (93)
T 2cqh_A 81 VS 82 (93)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 313
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.48 E-value=2.8e-14 Score=124.10 Aligned_cols=76 Identities=25% Similarity=0.210 Sum_probs=69.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceE--EEEEeccC-CCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVY--RLRLLGDY-HHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~--~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak 429 (442)
..+|||+|||+++|+++|+++|++ | .|. +|+|+.|. |+++|||||+|.+.++|.+|+++++..|+|+.|+|.++.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECC
Confidence 478999999999999999999998 8 566 99999876 789999999999999999999988899999999999875
Q ss_pred C
Q 013503 430 T 430 (442)
Q Consensus 430 ~ 430 (442)
+
T Consensus 120 ~ 120 (126)
T 2hgm_A 120 Q 120 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 314
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.48 E-value=1.6e-13 Score=120.00 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=68.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeec
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPS 428 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~-AFVeF~s~e~A~~Al~-LnG~~l~G--r~L~V~~A 428 (442)
...|||+||++.+|+++|+++|++ ||.|.+|.+..+ .+|+ |||+|.+.++|.+|++ |||..+.| +.|+|+||
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 357889999999999999999998 999999998764 3577 9999999999999999 99999988 99999999
Q ss_pred CCC
Q 013503 429 KTP 431 (442)
Q Consensus 429 k~~ 431 (442)
++.
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 876
No 315
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=5.1e-14 Score=129.14 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=76.1
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+|||..+++++|+++|++ ||.|..|.|+.+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+|.+
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 479999999999999999999998 9999999999886 6889999999999999999999 999999999999999987
Q ss_pred CCCCC
Q 013503 431 PVRPR 435 (442)
Q Consensus 431 ~~~pr 435 (442)
.....
T Consensus 167 ~~~~~ 171 (177)
T 2f3j_A 167 QIDLE 171 (177)
T ss_dssp GGGGC
T ss_pred CCCCC
Confidence 65443
No 316
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.48 E-value=1.1e-13 Score=124.94 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+.+|+++|+++|++||.|..|.++.++.+ ++|||||+|.+.++|.+|++ |+|..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35788999999999999999999999999999999988654 58999999999999999998 9999999999999997
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 150 ~~ 151 (165)
T 1rk8_A 150 FV 151 (165)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=5.5e-14 Score=134.04 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=71.1
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCC--CeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCG--QVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G--~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.|+.+ ++|||||+|.+.++|++||+ ||+..|.|++|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577899999999999999999999999 9999999998654 58999999999999999999 999999999999998
Q ss_pred cC
Q 013503 330 SK 331 (442)
Q Consensus 330 s~ 331 (442)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 318
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=7.7e-14 Score=111.62 Aligned_cols=71 Identities=27% Similarity=0.461 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGC----G-------QVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFY 323 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~----G-------~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr 323 (442)
..++|||+|||+++|+++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+.|+|..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 57899999999999999999999999 8 9999999866 4899999999999999999999999999
Q ss_pred cEEEec
Q 013503 324 PVRVLP 329 (442)
Q Consensus 324 ~L~V~~ 329 (442)
+|.|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999975
No 319
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.47 E-value=1.4e-14 Score=128.03 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=70.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|||+++|+++|+++|++|| |.+|+|+.|+.. ++|||||+|.+.++|++||++++..|.|+.|.|..+..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999 679999988653 69999999999999999999999999999999988753
No 320
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-14 Score=119.42 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=68.5
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDP--NSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~--~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|+.||.|.. .++.+. ..++|||||+|.+.++|++|++|+|..+.|++|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35789999999999999999999999998887 444443 346899999999999999999999999999999999975
No 321
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6e-14 Score=119.63 Aligned_cols=75 Identities=19% Similarity=0.169 Sum_probs=67.5
Q ss_pred cCCcEEEEEcCCCc-ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcC--cccCCccEEEec
Q 013503 254 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAG--TMLGFYPVRVLP 329 (442)
Q Consensus 254 ~~~rtLfV~NLp~~-~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng--~~l~Gr~L~V~~ 329 (442)
...++|||+|||++ +|+++|+++|++||.|.+|++.+. +|||||+|.+.++|++|++ |++ ..+.|++|.|.+
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 35889999999998 999999999999999999999754 5799999999999999998 764 569999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 99 a~~ 101 (112)
T 1x4f_A 99 SEK 101 (112)
T ss_dssp ECS
T ss_pred Ccc
Confidence 853
No 322
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.47 E-value=6.9e-14 Score=118.97 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=66.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCee-----EEEe
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLP-----IRVS 426 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~-----L~V~ 426 (442)
..+|||+|||+.+|+++|+++|++ ||+|..|.|+.+ |||||+|.+.++|.+|++ |||..|.|+. |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 478999999999999999999998 999999999876 799999999999999999 9999999998 8888
Q ss_pred ecCCCCC
Q 013503 427 PSKTPVR 433 (442)
Q Consensus 427 ~Ak~~~~ 433 (442)
.+.+...
T Consensus 90 ~~~~~~~ 96 (115)
T 3beg_B 90 VDGPRSP 96 (115)
T ss_dssp ECC----
T ss_pred cCCCCCC
Confidence 8766543
No 323
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.47 E-value=2.5e-14 Score=118.31 Aligned_cols=77 Identities=19% Similarity=0.387 Sum_probs=71.1
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|+.||.|.+|++..++.+ ++|||||+|.+.++|++|++ ++..++|++|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 35689999999999999999999999999999999998733 58999999999999999999 9999999999998864
No 324
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=3.7e-14 Score=122.82 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=69.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCe----eEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQV----VDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I----~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+... ++|||||+|.+.++|++|++.++..|+|+.|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 467899999999999999999999999975 68999887543 5899999999999999999999999999999998
Q ss_pred cc
Q 013503 329 PS 330 (442)
Q Consensus 329 ~s 330 (442)
.+
T Consensus 101 ~a 102 (123)
T 2dha_A 101 RS 102 (123)
T ss_dssp EE
T ss_pred EC
Confidence 76
No 325
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.4e-13 Score=110.67 Aligned_cols=73 Identities=23% Similarity=0.308 Sum_probs=66.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
...++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 35789999996 89999999999999999999995 345899999999999999998 999999999999999854
No 326
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=1.4e-13 Score=124.87 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=69.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeecC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPSK 429 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G--r~L~V~~Ak 429 (442)
..+|||+||++.+|+++|+++|++ ||+|.+|.|..+. ++|||||+|.+.++|++|++ |||..|.| +.|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 367999999999999999999998 9999999997543 57899999999999999999 99999965 999999998
Q ss_pred CC
Q 013503 430 TP 431 (442)
Q Consensus 430 ~~ 431 (442)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 327
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.7e-14 Score=112.08 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=67.0
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
..++|||+|||..+|+++|+++|++ ||.|..|+|+.+ ++|||||+|.+.++|++|+.. +..+.|++|+|.++++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 3489999999999999999999998 999999999865 688999999999999765332 45679999999999876
Q ss_pred CCC
Q 013503 432 VRP 434 (442)
Q Consensus 432 ~~p 434 (442)
...
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 328
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=5.3e-15 Score=125.55 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=73.1
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEeCCHHHHHHHHH-hcCcccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVD--------CRICGDPN--SVLRFAFIEFTDEEGARAALN-LAGTMLG 321 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~--------V~i~~d~~--~skG~AFVeF~s~e~A~kAl~-Lng~~l~ 321 (442)
....++|||+|||+++|+++|+++|++||.|.. |+++.++. .++|||||+|.+.++|++|++ |+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 88888754 368999999999999999999 9999999
Q ss_pred CccEEEeccCC
Q 013503 322 FYPVRVLPSKT 332 (442)
Q Consensus 322 Gr~L~V~~s~~ 332 (442)
|++|.|.++..
T Consensus 84 g~~l~V~~a~~ 94 (116)
T 2lcw_A 84 GNPIKVSFATR 94 (116)
Confidence 99999999753
No 329
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=9.2e-14 Score=118.19 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCcc-----EEEe
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYP-----VRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~-----L~V~ 328 (442)
..++|||+|||+++|+++|+++|++||.|..|.++.+ |||||+|.+.++|++||+ |||..|.|++ |.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4688999999999999999999999999999999877 799999999999999999 9999999999 6666
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
...
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 330
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=113.08 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=68.0
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEec
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLP 329 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~ 329 (442)
+...++|||+|||+++|+++|+++|+.|+ .|+++.++.+ ++|||||+|.+.++|++|++ |++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678999999999999999999999774 5677776543 58999999999999999999 999999999999999
Q ss_pred cCC
Q 013503 330 SKT 332 (442)
Q Consensus 330 s~~ 332 (442)
++.
T Consensus 89 a~~ 91 (102)
T 2fc8_A 89 AKP 91 (102)
T ss_dssp CCC
T ss_pred ecC
Confidence 864
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=2.1e-13 Score=109.10 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=65.9
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcC----C-------ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVC----G-------EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS 420 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~f----G-------~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~G 420 (442)
..++|||+|||..+|+++|+++|++ | | .|.++.+.++ +|||||+|.+.++|.+|+.|||..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 3489999999999999999999998 9 8 9999999754 679999999999999999999999999
Q ss_pred eeEEEee
Q 013503 421 LPIRVSP 427 (442)
Q Consensus 421 r~L~V~~ 427 (442)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 332
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=1.1e-12 Score=126.95 Aligned_cols=76 Identities=21% Similarity=0.310 Sum_probs=70.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC-CccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG-FYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~-Gr~L~V~~s 330 (442)
....++|||+|||..+|+++|+++|++||.|.+|++..++ +|||||+|.+.++|.+|++ |||..+. |++|.|.++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 3457889999999999999999999999999999999766 3899999999999999999 9999999 999999997
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 5
No 333
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=1.4e-13 Score=111.83 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=61.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcc--cCCccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTM--LGFYPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~--l~Gr~L~V~~s 330 (442)
+....+|||+|||+++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++ +++.. +.|++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 457899999999999999999999999999999999876 56999999999999984 34444 56999999987
Q ss_pred C
Q 013503 331 K 331 (442)
Q Consensus 331 ~ 331 (442)
.
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 334
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.3e-13 Score=110.68 Aligned_cols=76 Identities=17% Similarity=0.308 Sum_probs=62.7
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTP 431 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~Ak~~ 431 (442)
...+|||+|||+++|+++|+++|++ ||.|.+|+|+++ ++|||||+|.+.++|.+ +.-....+.|+.|.|.++++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~---srGfaFV~F~~~~~A~~-~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP---FRAFAFVTFADDKVAQS-LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS---CCSEEEEEESCHHHHHH-HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC---CCCEEEEEECCHHHHHH-HcCCCcccCCEEEEEEEcCCC
Confidence 4579999999999999999999998 999999999875 78999999999999984 221234567999999999865
Q ss_pred C
Q 013503 432 V 432 (442)
Q Consensus 432 ~ 432 (442)
.
T Consensus 85 ~ 85 (89)
T 3d2w_A 85 H 85 (89)
T ss_dssp -
T ss_pred C
Confidence 3
No 335
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.44 E-value=3.3e-13 Score=126.39 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=69.9
Q ss_pred cceeeeeCCC-CCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 353 ARTIYCTNID-KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 353 ~~tL~V~NLp-~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
.++|||+||| ..+|+++|+++|++ ||.|.+|+++++ .+|||||+|.+.++|.+|++ |||..+.|++|+|.+++.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 4799999999 79999999999998 999999999875 36899999999999999999 999999999999999975
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 80 ~ 80 (205)
T 3tyt_A 80 P 80 (205)
T ss_dssp S
T ss_pred C
Confidence 4
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.44 E-value=5.6e-13 Score=112.10 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=70.0
Q ss_pred cccceeeeeCCCC-----CCCHHHHHHHhhhcCCceEEEEEeccC---CCcceEEEEEeCCHHHHHHHHH-hCCceeCCe
Q 013503 351 MCARTIYCTNIDK-----KVTQADVKLFFESVCGEVYRLRLLGDY---HHSTRIAFVEFVMAESAIAALN-CSGVVLGSL 421 (442)
Q Consensus 351 ~~~~tL~V~NLp~-----~vTeedL~~~F~~~fG~I~~v~I~~d~---g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr 421 (442)
.++++|+|+||.. +-++++|++.|++ ||.|.+|.|+++. +.++|||||+|.+.++|.+|++ |||..++|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 3568999999963 2378999999998 9999999999875 4789999999999999999999 999999999
Q ss_pred eEEEeecCC
Q 013503 422 PIRVSPSKT 430 (442)
Q Consensus 422 ~L~V~~Ak~ 430 (442)
.|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=121.88 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=68.4
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCcc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDC--------RICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYP 324 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V--------~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~ 324 (442)
...++|||+|||+++|+++|+++|+.||.|..| ++.. ...++|||||+|.+.++|.+|+. |||..+.|++
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999998764 3332 34468999999999999999999 9999999999
Q ss_pred EEEeccCC
Q 013503 325 VRVLPSKT 332 (442)
Q Consensus 325 L~V~~s~~ 332 (442)
|.|.+++.
T Consensus 122 l~V~~a~~ 129 (143)
T 3egn_A 122 MVVQFARS 129 (143)
T ss_dssp CEEEECCC
T ss_pred EEEEECCC
Confidence 99999853
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=3.6e-13 Score=116.81 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=66.9
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceE-EEEEeCCHHHHHHHHH-hCCceeCC--eeEEEeecC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRI-AFVEFVMAESAIAALN-CSGVVLGS--LPIRVSPSK 429 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~-AFVeF~s~e~A~~Al~-LnG~~l~G--r~L~V~~Ak 429 (442)
..|||+||++.+|+++|+++|++ ||.|.+|.|... .|| |||+|.+.++|.+|++ |||..|.| +.|+|.+|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 45789999999999999999998 999999999753 376 9999999999999999 99999987 699999998
Q ss_pred CCC
Q 013503 430 TPV 432 (442)
Q Consensus 430 ~~~ 432 (442)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=3.9e-13 Score=121.87 Aligned_cols=77 Identities=21% Similarity=0.157 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC--ccEEEeccC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSK 331 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G--r~L~V~~s~ 331 (442)
...+|||+||++.+|+++|+++|++||.|.+|++..+. ++|||||+|.+.++|++|++ |||..|.| ++|+|.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 45679999999999999999999999999999997543 46899999999999999999 99999965 999999987
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 340
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=117.49 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=66.8
Q ss_pred cCCcEEEE--EcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCccc-----CCccE
Q 013503 254 IIRRTVYV--SDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML-----GFYPV 325 (442)
Q Consensus 254 ~~~rtLfV--~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l-----~Gr~L 325 (442)
...++||| +||++++|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++ |||..+ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 35788999 669999999999999999999999988753 5899999999999999999 999988 68999
Q ss_pred EEeccC
Q 013503 326 RVLPSK 331 (442)
Q Consensus 326 ~V~~s~ 331 (442)
.|.++.
T Consensus 99 ~v~~a~ 104 (114)
T 2cq2_A 99 YLNFVE 104 (114)
T ss_dssp EEEEES
T ss_pred EEEecc
Confidence 999875
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=4.5e-13 Score=110.33 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=65.1
Q ss_pred ceeeeeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEee
Q 013503 354 RTIYCTNIDKKVTQAD----VKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSP 427 (442)
Q Consensus 354 ~tL~V~NLp~~vTeed----L~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~ 427 (442)
+.|||.|||+.+++++ |+++|++ || +|.+|. .|+|||+|.+.++|.+|++ |+|..+.|++|+|++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 5589998 95 999991 2899999999999999999 999999999999999
Q ss_pred cCCCCCCCC
Q 013503 428 SKTPVRPRA 436 (442)
Q Consensus 428 Ak~~~~pr~ 436 (442)
|++...--.
T Consensus 81 A~~~sd~~~ 89 (96)
T 2diu_A 81 TPKNRELCE 89 (96)
T ss_dssp SCCSCCCCC
T ss_pred cCCCcceeE
Confidence 988765433
No 342
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.42 E-value=6e-13 Score=116.31 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=69.2
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-hcCcccCC--ccEEEec
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLP 329 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~-AFVeF~s~e~A~kAl~-Lng~~l~G--r~L~V~~ 329 (442)
.....|||+||++.+|+++|+++|++||.|.+|++..+. +|+ |||+|.+.++|++|++ |||..|.| ++|+|.+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 345668999999999999999999999999999988654 477 9999999999999999 99999988 8999999
Q ss_pred cCCC
Q 013503 330 SKTA 333 (442)
Q Consensus 330 s~~~ 333 (442)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8654
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.4e-13 Score=109.44 Aligned_cols=74 Identities=23% Similarity=0.329 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEeccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s~~ 332 (442)
..++|||+|||+++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|+.. ...+.|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5789999999999999999999999999999999876 568999999999999865443 3456899999998753
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=113.04 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPN-----SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~-----~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
..++|||+|||+++|+++|+++|++||.|. +.++.+.. .++|||||+|.+.++|++|++ |++ ++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 578899999999999999999999999999 87777653 458999999999999999998 732 566666555
Q ss_pred c
Q 013503 329 P 329 (442)
Q Consensus 329 ~ 329 (442)
.
T Consensus 84 ~ 84 (114)
T 2dnl_A 84 S 84 (114)
T ss_dssp C
T ss_pred c
Confidence 4
No 345
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.3e-12 Score=113.20 Aligned_cols=74 Identities=16% Similarity=0.121 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEeCCHHHHHHHHH-hcCcccCC--ccEEEeccC
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRF-AFIEFTDEEGARAALN-LAGTMLGF--YPVRVLPSK 331 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~-AFVeF~s~e~A~kAl~-Lng~~l~G--r~L~V~~s~ 331 (442)
...|||+||++.+|+++|+++|++||.|.+|++... .|| |||+|.+.++|..|++ |||..|.| ++|+|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 345789999999999999999999999999999753 286 9999999999999999 99999987 699999986
Q ss_pred CC
Q 013503 332 TA 333 (442)
Q Consensus 332 ~~ 333 (442)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=4.9e-13 Score=115.07 Aligned_cols=76 Identities=21% Similarity=0.262 Sum_probs=68.8
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|+ ++|+++|+++|++ ||.|.+|.+. .++|||||+|.+.++|.+|++ |||..+.|+.|+|.++++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 4589999996 6999999999998 9999999996 567899999999999999998 999999999999999987
Q ss_pred CCCC
Q 013503 431 PVRP 434 (442)
Q Consensus 431 ~~~p 434 (442)
....
T Consensus 111 ~~~~ 114 (121)
T 2bz2_A 111 QPML 114 (121)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 6543
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=7.4e-13 Score=113.93 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=67.4
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
+...++|||+|| ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|++|++ |+|..+.|++|.|.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 456889999996 69999999999999999999996 346899999999999999998 99999999999999985
Q ss_pred C
Q 013503 332 T 332 (442)
Q Consensus 332 ~ 332 (442)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 3
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.38 E-value=1.2e-12 Score=121.45 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=72.3
Q ss_pred hccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHHhcCcccCCccEEEecc
Q 013503 252 EEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVLPS 330 (442)
Q Consensus 252 ~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~~s 330 (442)
.+...++|||+|||+++|+++|+++|++||.|.+|+++.+..+ ++|||||+|.+.++|++|++..+..+.|++|.|.+.
T Consensus 105 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 105 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 184 (193)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEET
T ss_pred hccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEh
Confidence 3446789999999999999999999999999999999987654 589999999999999999995566999999999986
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
+.
T Consensus 185 ~~ 186 (193)
T 2voo_A 185 DD 186 (193)
T ss_dssp TT
T ss_pred HH
Confidence 53
No 349
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=107.92 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=62.6
Q ss_pred CCcEEEEEcCCCcChHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 255 IRRTVYVSDIDQQVTEEQ----LAALFVGC-GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~----L~elF~~~-G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
..++|||+|||+.+++++ |+++|++| |+|.+|. .|+|||.|.+.++|++|++ |+|..+.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 344499999999999988 55899999 5999981 1899999999999999998 99999999999999
Q ss_pred ccCCC
Q 013503 329 PSKTA 333 (442)
Q Consensus 329 ~s~~~ 333 (442)
+++..
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 98644
No 350
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=110.81 Aligned_cols=59 Identities=15% Similarity=0.330 Sum_probs=54.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCcceEEEEEeCCHHHHHHHHH-h
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY-----HHSTRIAFVEFVMAESAIAALN-C 413 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~-----g~~rG~AFVeF~s~e~A~~Al~-L 413 (442)
.++|||+|||+.+|+++|+++|++ ||.|. +.++.+. |.++|||||+|.+.++|.+|++ |
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 479999999999999999999998 99999 8887764 5789999999999999999998 7
No 351
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=2.2e-12 Score=108.49 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=69.6
Q ss_pred ccCCcEEEEEcCCC-----cChHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEeCCHHHHHHHHH-hcCcccCCc
Q 013503 253 EIIRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPN---SVLRFAFIEFTDEEGARAALN-LAGTMLGFY 323 (442)
Q Consensus 253 ~~~~rtLfV~NLp~-----~~Tee~L~elF~~~G~I~~V~i~~d~~---~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr 323 (442)
+..+++|+|+||.. +.++++|++.|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999962 247899999999999999999998764 368999999999999999998 999999999
Q ss_pred cEEEeccC
Q 013503 324 PVRVLPSK 331 (442)
Q Consensus 324 ~L~V~~s~ 331 (442)
+|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 352
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=8.4e-13 Score=126.78 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=68.5
Q ss_pred ccceeeeeCCCCCC---------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee---
Q 013503 352 CARTIYCTNIDKKV---------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL--- 418 (442)
Q Consensus 352 ~~~tL~V~NLp~~v---------TeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l--- 418 (442)
..++|||+||+..+ ++++|+++|++ ||+|.+|+|+. ++|||||+|.+.++|+.|++ |+|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 35899999999998 79999999998 99999999985 47799999999999999999 999999
Q ss_pred ---------CCeeEEEeecCCCCCCCCC
Q 013503 419 ---------GSLPIRVSPSKTPVRPRAP 437 (442)
Q Consensus 419 ---------~Gr~L~V~~Ak~~~~pr~p 437 (442)
.|+.|.|.||+..+.|...
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pnp~~~ 235 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPDPAAQ 235 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--------
T ss_pred ccccccccCCCCEEEEEEccCCCCHHHh
Confidence 8999999999987766543
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.35 E-value=1.5e-12 Score=135.46 Aligned_cols=79 Identities=22% Similarity=0.256 Sum_probs=73.0
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEecc
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPS 330 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s 330 (442)
...++|||+|||+.+|+++|.++|++||.|..|.|+.++.+ ++|||||+|.+.++|.+||. |||..|.|++|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999988643 58999999999999999998 9999999999999998
Q ss_pred CC
Q 013503 331 KT 332 (442)
Q Consensus 331 ~~ 332 (442)
..
T Consensus 180 ~~ 181 (437)
T 3pgw_S 180 RG 181 (437)
T ss_pred CC
Confidence 64
No 354
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=2.1e-12 Score=115.78 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=67.8
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
...++|||+|||+++|+++|+++|++||.|..+ .....++|||||+|.+.++|.+|++ |+|..+.|++|.|.++.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 357899999999999999999999999988766 4444578999999999999999999 99999999999999974
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.6e-12 Score=107.00 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=67.7
Q ss_pred cccceeeeeCCCCCC-----------CHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCcee
Q 013503 351 MCARTIYCTNIDKKV-----------TQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVL 418 (442)
Q Consensus 351 ~~~~tL~V~NLp~~v-----------TeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l 418 (442)
..+++|+|.||.... ++++|+++|++ ||.|..|.| .+. .++|||||+|.+.++|.+|++ |||..+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 346899999994432 26899999998 999999966 443 379999999999999999998 999999
Q ss_pred CCeeEEEeecCCCC
Q 013503 419 GSLPIRVSPSKTPV 432 (442)
Q Consensus 419 ~Gr~L~V~~Ak~~~ 432 (442)
.|++|+|.++.+..
T Consensus 90 ~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 90 GGRQITAQAWDGTT 103 (112)
T ss_dssp TTEECEEEECCSCC
T ss_pred CCcEEEEEEeCCCC
Confidence 99999999997753
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.4e-12 Score=106.12 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=66.7
Q ss_pred ccCCcEEEEEcCCCcC-----------hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCccc
Q 013503 253 EIIRRTVYVSDIDQQV-----------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML 320 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~-----------Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l 320 (442)
+..+++|+|+||.... ++++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++|++ |||..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3468999999994433 36899999999999999966 4443 68999999999999999998 999999
Q ss_pred CCccEEEeccC
Q 013503 321 GFYPVRVLPSK 331 (442)
Q Consensus 321 ~Gr~L~V~~s~ 331 (442)
.|++|.|.++.
T Consensus 90 ~gr~l~v~~a~ 100 (112)
T 2dit_A 90 GGRQITAQAWD 100 (112)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEEeC
Confidence 99999999974
No 357
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.1e-12 Score=112.30 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=66.6
Q ss_pred cEEEEEcC----CCcChHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEeCC----HHH----HHHHHH---hcCcc
Q 013503 257 RTVYVSDI----DQQVTEEQLAALFVGCGQVVDCRICGDPNS--VLRFAFIEFTD----EEG----ARAALN---LAGTM 319 (442)
Q Consensus 257 rtLfV~NL----p~~~Tee~L~elF~~~G~I~~V~i~~d~~~--skG~AFVeF~s----~e~----A~kAl~---Lng~~ 319 (442)
..|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999987 59999999996 333 788876 69999
Q ss_pred cCCccEEEeccC
Q 013503 320 LGFYPVRVLPSK 331 (442)
Q Consensus 320 l~Gr~L~V~~s~ 331 (442)
++|++|+|...+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999853
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.31 E-value=3.9e-12 Score=110.63 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=67.8
Q ss_pred ceeeeeCC----CCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcceEEEEEeCC----HHH----HHHHHH---hCCc
Q 013503 354 RTIYCTNI----DKKVTQADVKLFFESVCGEVYRLRLLGDY--HHSTRIAFVEFVM----AES----AIAALN---CSGV 416 (442)
Q Consensus 354 ~tL~V~NL----p~~vTeedL~~~F~~~fG~I~~v~I~~d~--g~~rG~AFVeF~s----~e~----A~~Al~---LnG~ 416 (442)
..|||+|| |+.+++++|+++|++ ||+|.++.++.|+ |.++|||||+|.+ +++ |.+|+. ++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999998 9999999999998 6999999999995 333 788876 6999
Q ss_pred eeCCeeEEEeecCCC
Q 013503 417 VLGSLPIRVSPSKTP 431 (442)
Q Consensus 417 ~l~Gr~L~V~~Ak~~ 431 (442)
.++|++|+|..-+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986543
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.29 E-value=5.6e-12 Score=105.90 Aligned_cols=78 Identities=14% Similarity=0.118 Sum_probs=67.4
Q ss_pred ccceeeeeCC--CCCCC--------HHHHHHHhhhcCCceEEEEEeccC----CCcceEEEEEeCCHHHHHHHHH-hCCc
Q 013503 352 CARTIYCTNI--DKKVT--------QADVKLFFESVCGEVYRLRLLGDY----HHSTRIAFVEFVMAESAIAALN-CSGV 416 (442)
Q Consensus 352 ~~~tL~V~NL--p~~vT--------eedL~~~F~~~fG~I~~v~I~~d~----g~~rG~AFVeF~s~e~A~~Al~-LnG~ 416 (442)
+++.|.|.|+ |.++. ++||++.|++ ||.|.+|.|+++. +.++|+|||+|.+.++|.+|++ |||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 4578999998 33333 4799999998 9999999999875 2578999999999999999998 9999
Q ss_pred eeCCeeEEEeecCC
Q 013503 417 VLGSLPIRVSPSKT 430 (442)
Q Consensus 417 ~l~Gr~L~V~~Ak~ 430 (442)
.++|++|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999753
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.28 E-value=7.1e-12 Score=120.36 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=69.3
Q ss_pred cCCcEEEEEcCCCcC---------hHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCccc---
Q 013503 254 IIRRTVYVSDIDQQV---------TEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTML--- 320 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~---------Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l--- 320 (442)
...++|||+||+..+ |+++|+++|++||+|.+|+++.+ +|||||+|.+.++|+.|++ |+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 468999999999998 89999999999999999999864 5899999999999999998 999999
Q ss_pred ---------CCccEEEeccCCC
Q 013503 321 ---------GFYPVRVLPSKTA 333 (442)
Q Consensus 321 ---------~Gr~L~V~~s~~~ 333 (442)
.|++|.|.+++..
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC--
T ss_pred ccccccccCCCCEEEEEEccCC
Confidence 8999999998643
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=2.3e-12 Score=108.07 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=60.5
Q ss_pred eeCCCCCCCHHHHHHHh------------hhcCCceEEEEEeccC-CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeE
Q 013503 358 CTNIDKKVTQADVKLFF------------ESVCGEVYRLRLLGDY-HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPI 423 (442)
Q Consensus 358 V~NLp~~vTeedL~~~F------------~~~fG~I~~v~I~~d~-g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L 423 (442)
+.|||..+++++|++.| ++ ||.|.+|.|+++. ++++|||||+|.+.++|.+|++ |||..++|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666776666555 98 9999999999876 6889999999999999999999 99999999999
Q ss_pred EEeec
Q 013503 424 RVSPS 428 (442)
Q Consensus 424 ~V~~A 428 (442)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 362
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=3.5e-11 Score=115.95 Aligned_cols=75 Identities=21% Similarity=0.305 Sum_probs=69.5
Q ss_pred ccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 013503 352 CARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKT 430 (442)
Q Consensus 352 ~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~ 430 (442)
..++|||+|||+++|+++|+++|++ ||.|..|.+.+ .+|||||+|.+.++|.+|+. |+|..+.|+.|+|.++.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 4579999999999999999999998 99999999974 46799999999999999998 999999999999999875
Q ss_pred C
Q 013503 431 P 431 (442)
Q Consensus 431 ~ 431 (442)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.22 E-value=2.6e-11 Score=101.79 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCcEEEEEcC--CCcC--------hHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hcCcc
Q 013503 255 IRRTVYVSDI--DQQV--------TEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTM 319 (442)
Q Consensus 255 ~~rtLfV~NL--p~~~--------Tee~L~elF~~~G~I~~V~i~~d~~~----skG~AFVeF~s~e~A~kAl~-Lng~~ 319 (442)
.++.|.+.|+ |.++ .+++|++.|++||.|.+|+++.+..+ ++|+|||+|.+.++|.+|++ |||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 3333 34799999999999999999987643 58999999999999999998 99999
Q ss_pred cCCccEEEeccC
Q 013503 320 LGFYPVRVLPSK 331 (442)
Q Consensus 320 l~Gr~L~V~~s~ 331 (442)
+.|++|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999863
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.22 E-value=2.8e-11 Score=103.93 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=67.8
Q ss_pred cccceeeeeCCCC--CC---CHHHHHHHhhhcCCceEEEEEeccC------CCcceEEEEEeCCHHHHHHHHH-hCCcee
Q 013503 351 MCARTIYCTNIDK--KV---TQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVL 418 (442)
Q Consensus 351 ~~~~tL~V~NLp~--~v---TeedL~~~F~~~fG~I~~v~I~~d~------g~~rG~AFVeF~s~e~A~~Al~-LnG~~l 418 (442)
.++++|+|.|+-. ++ .++||++.|++ ||.|.+|.|+++. +.++|+|||+|.+.++|.+|++ |||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 3568999999832 22 36899999998 9999999999874 2567999999999999999999 999999
Q ss_pred CCeeEEEeecC
Q 013503 419 GSLPIRVSPSK 429 (442)
Q Consensus 419 ~Gr~L~V~~Ak 429 (442)
+|+.|+|.++.
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999874
No 365
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.2e-11 Score=99.29 Aligned_cols=66 Identities=23% Similarity=0.249 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCC
Q 013503 363 KKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSKTPVRP 434 (442)
Q Consensus 363 ~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak~~~~p 434 (442)
..+++++|+++|++ ||.|..|.|+ +.++|||||+|.+.++|.+|++ +++ +.|++|+|.|+++++..
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 56899999999998 9999999998 4688999999999999999999 655 67999999999877543
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.20 E-value=9.1e-12 Score=104.39 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=61.0
Q ss_pred EEcCCCcChHHHHHHHh------------hcCCCeeEEEEecCCCC-CceEEEEEeCCHHHHHHHHH-hcCcccCCccEE
Q 013503 261 VSDIDQQVTEEQLAALF------------VGCGQVVDCRICGDPNS-VLRFAFIEFTDEEGARAALN-LAGTMLGFYPVR 326 (442)
Q Consensus 261 V~NLp~~~Tee~L~elF------------~~~G~I~~V~i~~d~~~-skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~ 326 (442)
+.|||..+|+++|++.| ++||.|.+|+++.+..+ ++|||||+|.+.++|.+|++ |||..+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 55677777888777666 99999999999987643 69999999999999999998 999999999999
Q ss_pred Eecc
Q 013503 327 VLPS 330 (442)
Q Consensus 327 V~~s 330 (442)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.14 E-value=1e-10 Score=100.37 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=67.6
Q ss_pred CCcEEEEEcCCC-----cChHHHHHHHhhcCCCeeEEEEecCCCC------CceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 255 IRRTVYVSDIDQ-----QVTEEQLAALFVGCGQVVDCRICGDPNS------VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 255 ~~rtLfV~NLp~-----~~Tee~L~elF~~~G~I~~V~i~~d~~~------skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
.+++|+++|+-. +-.+++|++.|++||.|.+|+|+.+..+ ++|+|||+|.+.++|.+|++ |||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999942 2346899999999999999999987532 47999999999999999999 99999999
Q ss_pred ccEEEeccC
Q 013503 323 YPVRVLPSK 331 (442)
Q Consensus 323 r~L~V~~s~ 331 (442)
++|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999863
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.10 E-value=2.1e-10 Score=97.90 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=64.0
Q ss_pred ccceeeeeCCCCC----------CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCC
Q 013503 352 CARTIYCTNIDKK----------VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGS 420 (442)
Q Consensus 352 ~~~tL~V~NLp~~----------vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~G 420 (442)
+++.|.|.|+-.. -.++||++.|++ ||.|.+|.|.++. ++|+|||+|.+.++|.+|++ |||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3478889887332 124688999998 9999999997664 58999999999999999999 99999999
Q ss_pred eeEEEeecC
Q 013503 421 LPIRVSPSK 429 (442)
Q Consensus 421 r~L~V~~Ak 429 (442)
+.|+|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=1.3e-10 Score=117.14 Aligned_cols=74 Identities=15% Similarity=0.237 Sum_probs=64.5
Q ss_pred cccceeeeeC--CCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeC---Ce--e
Q 013503 351 MCARTIYCTN--IDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLG---SL--P 422 (442)
Q Consensus 351 ~~~~tL~V~N--Lp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~---Gr--~ 422 (442)
.++++|||+| |+..+|+++|+++|++ ||+|.+|.++. ++|||||+|.+.++|++|++ |||..+. |+ +
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 3457999999 5788999999999998 99999998864 47899999999999999999 9998883 44 7
Q ss_pred EEEeecC
Q 013503 423 IRVSPSK 429 (442)
Q Consensus 423 L~V~~Ak 429 (442)
|+|.+++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888875
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=8e-10 Score=92.07 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=55.0
Q ss_pred CcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccCC
Q 013503 266 QQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSKT 332 (442)
Q Consensus 266 ~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~~ 332 (442)
..+|+++|+++|++||.|.+|.++. .++|||||+|.+.++|+.|++ +++ +.|++|.|.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 5689999999999999999999983 457999999999999999999 554 6799999999753
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.06 E-value=2e-10 Score=115.79 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=64.4
Q ss_pred ccCCcEEEEEc--CCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccC---Cc--c
Q 013503 253 EIIRRTVYVSD--IDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLG---FY--P 324 (442)
Q Consensus 253 ~~~~rtLfV~N--Lp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~---Gr--~ 324 (442)
...+++|||+| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++ |||..+. |+ +
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34688999999 578999999999999999999988764 46899999999999999999 9999873 44 6
Q ss_pred EEEeccC
Q 013503 325 VRVLPSK 331 (442)
Q Consensus 325 L~V~~s~ 331 (442)
|.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777753
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.02 E-value=7.3e-10 Score=94.47 Aligned_cols=76 Identities=12% Similarity=0.101 Sum_probs=65.0
Q ss_pred cCCcEEEEEcCCC--c--------ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 254 IIRRTVYVSDIDQ--Q--------VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 254 ~~~rtLfV~NLp~--~--------~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
..++.|.+.|+=. + -.+++|++.|++||.|.+|.+.++. ++|+|||+|.+.++|.+|++ |||..++|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578899999832 1 1246889999999999999997653 57999999999999999999 99999999
Q ss_pred ccEEEeccC
Q 013503 323 YPVRVLPSK 331 (442)
Q Consensus 323 r~L~V~~s~ 331 (442)
++|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999863
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.6e-08 Score=82.40 Aligned_cols=72 Identities=22% Similarity=0.285 Sum_probs=61.4
Q ss_pred ceeeeeCCCC----CCCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEE
Q 013503 354 RTIYCTNIDK----KVTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRV 425 (442)
Q Consensus 354 ~tL~V~NLp~----~vTe----edL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V 425 (442)
.||+|.-.+. ++-. .+|.+.|++ ||+|..+++..+. +||+|.+.++|.+|++|||..++|+.|+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 5777776652 2333 679999998 9999999998764 79999999999999999999999999999
Q ss_pred eecCCCC
Q 013503 426 SPSKTPV 432 (442)
Q Consensus 426 ~~Ak~~~ 432 (442)
..+.+..
T Consensus 81 ~lkt~dW 87 (91)
T 2dnr_A 81 ALKSPSG 87 (91)
T ss_dssp EECCCSS
T ss_pred EeCCCCc
Confidence 9988754
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=3.7e-08 Score=84.78 Aligned_cols=73 Identities=16% Similarity=0.054 Sum_probs=65.3
Q ss_pred cCCcEEEEEcCCCc-ChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCC-HHHHHHHHH-h--cCcccCCccEEEe
Q 013503 254 IIRRTVYVSDIDQQ-VTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTD-EEGARAALN-L--AGTMLGFYPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~-~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s-~e~A~kAl~-L--ng~~l~Gr~L~V~ 328 (442)
...+.|||+||+.+ ++.++|+++|++||+|..|.+..+.. .|||+|.+ +++|..|+. + ++..|.|..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 35788999999999 99999999999999999999998876 69999999 899999998 7 5778899888887
Q ss_pred cc
Q 013503 329 PS 330 (442)
Q Consensus 329 ~s 330 (442)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=4.1e-08 Score=80.02 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCC----cChH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEE
Q 013503 255 IRRTVYVSDIDQ----QVTE----EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVR 326 (442)
Q Consensus 255 ~~rtLfV~NLp~----~~Te----e~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~ 326 (442)
...||+|.-.|. +.-. .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+|++|||..+.|+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 466788887762 2322 5788999999999999999875 8999999999999999999999999999
Q ss_pred EeccCCC
Q 013503 327 VLPSKTA 333 (442)
Q Consensus 327 V~~s~~~ 333 (442)
|....+.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9997543
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=3.9e-08 Score=84.61 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=63.9
Q ss_pred ccceeeeeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCC-HHHHHHHHH-h--CCceeCCeeEEEe
Q 013503 352 CARTIYCTNIDKK-VTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVM-AESAIAALN-C--SGVVLGSLPIRVS 426 (442)
Q Consensus 352 ~~~tL~V~NLp~~-vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s-~e~A~~Al~-L--nG~~l~Gr~L~V~ 426 (442)
....|+|+||+.. +++++|+++|++ ||+|..|.+.++.. .|||+|.+ .++|..|+. + ++..|.|..+++.
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 3478999999999 999999999998 99999999987765 69999999 899999998 7 4789999988886
Q ss_pred ec
Q 013503 427 PS 428 (442)
Q Consensus 427 ~A 428 (442)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=1.8e-07 Score=87.54 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=58.1
Q ss_pred CCHHHHHHHhhhcCCceEEEEEeccC------CCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 365 VTQADVKLFFESVCGEVYRLRLLGDY------HHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 365 vTeedL~~~F~~~fG~I~~v~I~~d~------g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
-.+++|++.|++ ||.|.++.|+++. ++++|++||+|.+.++|.+|+. |||..++||.|++.++.
T Consensus 141 e~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999998 9999999998653 2789999999999999999999 99999999999999974
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.7e-07 Score=76.77 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCcEEEEEcCCCc-----C-hH---HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccE
Q 013503 255 IRRTVYVSDIDQQ-----V-TE---EQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPV 325 (442)
Q Consensus 255 ~~rtLfV~NLp~~-----~-Te---e~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L 325 (442)
...||+|.-++.. . ++ .+|.+.|.+||.|..+++..|+ +||+|.+.++|.+|++|+|..+.||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 5788999988743 2 21 4688999999999999999875 999999999999999999999999999
Q ss_pred EEecc
Q 013503 326 RVLPS 330 (442)
Q Consensus 326 ~V~~s 330 (442)
+|...
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99874
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.3e-07 Score=77.45 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=59.7
Q ss_pred cceeeeeCCCCC-----CCH----HHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeE
Q 013503 353 ARTIYCTNIDKK-----VTQ----ADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPI 423 (442)
Q Consensus 353 ~~tL~V~NLp~~-----vTe----edL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L 423 (442)
..||+|.-++.. +-. .+|.+.|.+ ||+|..+++..+. +||+|.+.++|.+|++|||..++|+.|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 368888887642 222 568999998 9999999998764 899999999999999999999999999
Q ss_pred EEeecC
Q 013503 424 RVSPSK 429 (442)
Q Consensus 424 ~V~~Ak 429 (442)
+|.+-.
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998743
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.42 E-value=3.4e-07 Score=85.67 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=57.1
Q ss_pred ChHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEeccC
Q 013503 268 VTEEQLAALFVGCGQVVDCRICGDPN------SVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVLPSK 331 (442)
Q Consensus 268 ~Tee~L~elF~~~G~I~~V~i~~d~~------~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~~s~ 331 (442)
-.+++|++.|++||.|.++.++.+.. .++|++||+|.+.++|.+|+. |+|..+.||+|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 46689999999999999999986432 358999999999999999999 99999999999999863
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1e-05 Score=67.85 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=64.8
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcC-----CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVC-----GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~f-----G~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
.++|-+-|||..+++..|+.+.++ + |.|..+.+..|.+ =|+|+|.+...|.+|.- |+|..|.|++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 478999999999999999999999 9 9999999998875 49999999999999986 99999999999987
Q ss_pred e
Q 013503 427 P 427 (442)
Q Consensus 427 ~ 427 (442)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 4
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=9.1e-06 Score=68.16 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=66.9
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHH-HhcCcccCCccEE
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGC-----GQVVDCRICGDPNSVLRFAFIEFTDEEGARAAL-NLAGTMLGFYPVR 326 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~-----G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl-~Lng~~l~Gr~L~ 326 (442)
....++|-+-|||..+++..|+.+.+++ |.|..|.+.+|-. -|+|+|.+...|-+|. .|+|..|.|++|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3468999999999999999999999999 9999999999875 6999999999999887 5999999999999
Q ss_pred Eec
Q 013503 327 VLP 329 (442)
Q Consensus 327 V~~ 329 (442)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 865
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=5.8e-05 Score=62.64 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=74.7
Q ss_pred cCCcEEEEEcCCCcChHHHHHHHhhc---C--CCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCCccEEEe
Q 013503 254 IIRRTVYVSDIDQQVTEEQLAALFVG---C--GQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGFYPVRVL 328 (442)
Q Consensus 254 ~~~rtLfV~NLp~~~Tee~L~elF~~---~--G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~Gr~L~V~ 328 (442)
...++|.|.|||+.++++.|.-+|+. - |+|.++.... +-|+|+|.+.+.|++.|+...+.|.|.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 36789999999999999999999986 2 5899988865 36999999999999999977889999999998
Q ss_pred ccCCCCCCCCCCCCCCCchhhhcccceeeeeCCCCCCC
Q 013503 329 PSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVT 366 (442)
Q Consensus 329 ~s~~~~~~~~p~~~p~~~~~~~~~~~tL~V~NLp~~vT 366 (442)
+.. ++ ...+|++++|++.++
T Consensus 80 P~~-----------~~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 80 PAP-----------PR-------APARLLLQGLPPGTS 99 (104)
T ss_dssp ECC-----------CC-------CCCCCCCCSCCCCCC
T ss_pred cCC-----------CC-------CcceEeeecCCCCCC
Confidence 842 11 226799999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.0011 Score=55.19 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=63.0
Q ss_pred cceeeeeCCCCCC-C----HHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEe
Q 013503 353 ARTIYCTNIDKKV-T----QADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVS 426 (442)
Q Consensus 353 ~~tL~V~NLp~~v-T----eedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~ 426 (442)
.++|+|.||+.++ . .+.++++|.. |+++......+... -..|.|.+.++|.+|.. |++..++|+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4789999998864 2 3577899997 99988888886554 46899999999999998 99999999999999
Q ss_pred ecCCC
Q 013503 427 PSKTP 431 (442)
Q Consensus 427 ~Ak~~ 431 (442)
++++.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.99 E-value=0.0049 Score=51.08 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhc---C-CceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCCeeEEEeec
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESV---C-GEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPS 428 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~---f-G~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~Gr~L~V~~A 428 (442)
..+|.|.|||+.++++.|.-+|++. - |+|.++.... +-|+|+|.+.+.|++.|+-..+.|.|.+|.|.+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 4789999999999999999999862 2 4899998864 3689999999999999986688999999999875
Q ss_pred CC
Q 013503 429 KT 430 (442)
Q Consensus 429 k~ 430 (442)
-+
T Consensus 82 ~~ 83 (104)
T 2dhx_A 82 PP 83 (104)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.86 E-value=0.0029 Score=51.89 Aligned_cols=55 Identities=20% Similarity=0.297 Sum_probs=47.8
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~ 314 (442)
+...+.++| ++|+++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 445677788 999999999999999999964 47788775 69999999999999998
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.84 E-value=0.0032 Score=52.27 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=62.3
Q ss_pred CCcEEEEEcCCCcC-h----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hcCcccCCccEEEe
Q 013503 255 IRRTVYVSDIDQQV-T----EEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LAGTMLGFYPVRVL 328 (442)
Q Consensus 255 ~~rtLfV~NLp~~~-T----ee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Lng~~l~Gr~L~V~ 328 (442)
...+|+|.||+.++ + .+.++++|..|+++......+.-. -..|.|.++++|.+|.. |++..+.|++++|-
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 56889999998765 2 267899999999998887775443 57999999999999987 99999999999999
Q ss_pred ccC
Q 013503 329 PSK 331 (442)
Q Consensus 329 ~s~ 331 (442)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 975
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.008 Score=51.15 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=58.6
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhCCceeCC-eeEEEeec
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCSGVVLGS-LPIRVSPS 428 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~LnG~~l~G-r~L~V~~A 428 (442)
.+.|.|-+.|+.. ...|...|++ ||+|.+..... ...+-.|.|.+..+|++||..||..++| ..|-|.+.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 4789999999985 6678888998 99999988732 2348999999999999999999999985 77777774
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0059 Score=51.96 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=59.5
Q ss_pred ccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcCcccCC-ccEEEecc
Q 013503 253 EIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAGTMLGF-YPVRVLPS 330 (442)
Q Consensus 253 ~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng~~l~G-r~L~V~~s 330 (442)
....+.|.|-+.|+.. ...|...|++||.|.+...... ..+-.|.|.+..+|++||..||..+.| .-|-|.+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 3457889999999995 5566688999999998887322 249999999999999999999999985 66677764
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.70 E-value=0.0056 Score=49.73 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=54.5
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~----skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
+.|.|++||+.+|++++.+.++....+........+.+ .-.-|||.|.+.+++....+ ++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 46899999999999999999999988776666554322 24679999999999999998 99988743
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.17 E-value=0.016 Score=47.03 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=57.5
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---C-CcceEEEEEeCCHHHHHHHHH-hCCceeCCe-----eE
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----PI 423 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~---g-~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-----~L 423 (442)
.+|.|++||+.+|++++.+.+++ ...+......... + ..-.-|||.|.+.+++..-.+ ++|..+.+. +-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 47899999999999999999998 7887777665543 1 234579999999999998888 999877443 33
Q ss_pred EEeec
Q 013503 424 RVSPS 428 (442)
Q Consensus 424 ~V~~A 428 (442)
.|++|
T Consensus 81 ~VE~A 85 (91)
T 1uw4_A 81 IVEFA 85 (91)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 45554
No 392
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.77 E-value=0.0037 Score=65.03 Aligned_cols=67 Identities=18% Similarity=0.263 Sum_probs=51.9
Q ss_pred chhhhhccCCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHHhcC
Q 013503 247 SLAQREEIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLAG 317 (442)
Q Consensus 247 ~~~~~~~~~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~Lng 317 (442)
....+.....|+|+|. .|..+++.+|.++|++||+|.++.+..+.+ -||.|+|.+.+++..++...+
T Consensus 44 ~~~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 44 MQNERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCC
T ss_pred HHHHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccC
Confidence 4456667789999998 799999999999999999999999987665 699999999999998877433
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.39 E-value=0.018 Score=47.33 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=44.6
Q ss_pred cEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH
Q 013503 257 RTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN 314 (442)
Q Consensus 257 rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~ 314 (442)
+.++| ++|+++...+|.++|+.||. ..|+++.|. -|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 44566 99999999999999999994 457888775 69999999999999998
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.04 E-value=0.024 Score=48.92 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecC---------------CC-CCceEEEEEeCCHHHHHHHHHhcCc
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGD---------------PN-SVLRFAFIEFTDEEGARAALNLAGT 318 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d---------------~~-~skG~AFVeF~s~e~A~kAl~Lng~ 318 (442)
....|.|-+.|++.+. .+.+.|++||.|.+-.-..+ +. +...+..|+|.++.+|.+||..||.
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 3456888899877555 55578999999876211110 00 1245889999999999999999999
Q ss_pred ccCCccEEEecc
Q 013503 319 MLGFYPVRVLPS 330 (442)
Q Consensus 319 ~l~Gr~L~V~~s 330 (442)
.+.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987777775
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.82 E-value=0.034 Score=45.56 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=42.3
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-h
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-C 413 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-L 413 (442)
+.++| +.|+++...||.++|++ ||.| .|+.+.|. .|||.|.+++.|..|++ +
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 56666 99999999999999998 9843 34444332 69999999999999998 5
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.52 E-value=0.032 Score=45.74 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEeCCHHHHHHHHH-hcCcccCC
Q 013503 255 IRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNS----VLRFAFIEFTDEEGARAALN-LAGTMLGF 322 (442)
Q Consensus 255 ~~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~----skG~AFVeF~s~e~A~kAl~-Lng~~l~G 322 (442)
.+-.|.|+.||+.+||+++.+.++..-.+.....+..+.+ .-.-|||.|.+.++.....+ .+|..+-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3556999999999999998888776645433222222211 13579999999999999998 99988743
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.29 E-value=0.05 Score=46.96 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=55.9
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEE-EEEecc--------------CC-CcceEEEEEeCCHHHHHHHHHhCCce
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYR-LRLLGD--------------YH-HSTRIAFVEFVMAESAIAALNCSGVV 417 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~-v~I~~d--------------~g-~~rG~AFVeF~s~e~A~~Al~LnG~~ 417 (442)
..|.|-+.|+.. ...+.+.|++ ||.|.. +...++ +. ....+-.|+|.+..+|.+||..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 568888997765 4567788888 999876 222110 00 13458899999999999999999999
Q ss_pred eCCeeEEEeecC
Q 013503 418 LGSLPIRVSPSK 429 (442)
Q Consensus 418 l~Gr~L~V~~Ak 429 (442)
++|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888764
No 398
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.27 E-value=0.041 Score=45.22 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=42.9
Q ss_pred ceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 013503 354 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 414 (442)
Q Consensus 354 ~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln 414 (442)
+.++| +.|+++...||.++|++ || =..|+.+.|. .|||.|.+++.|..|++ +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fg-gv~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FG-NIQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SE-EEEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cC-CEEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999998 99 3445554332 69999999999999998 53
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.08 E-value=0.024 Score=58.93 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=45.7
Q ss_pred hcccceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHHhC
Q 013503 350 EMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNCS 414 (442)
Q Consensus 350 ~~~~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~Ln 414 (442)
....++|+|. .|..+++.+|.++|++ ||.|.++.+..+.| -||.|||.+.+++..++...
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSSS---EEEEEECC---CCHHHHSSC
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhcc
Confidence 3445899998 7999999999999998 99999999987665 49999999999999887643
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.92 E-value=0.11 Score=42.44 Aligned_cols=75 Identities=9% Similarity=0.123 Sum_probs=52.7
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---C-CcceEEEEEeCCHHHHHHHHH-hCCceeCCe-----e
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDY---H-HSTRIAFVEFVMAESAIAALN-CSGVVLGSL-----P 422 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~---g-~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr-----~ 422 (442)
+-+|.|+.||+.+|++++.+.+++ .-++......... + ..-.-|||.|.+.++...-.+ .+|..+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRP-LPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSC-CSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCC-cCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 357999999999999999998887 3444433332221 1 122368999999999999888 999776443 4
Q ss_pred EEEeec
Q 013503 423 IRVSPS 428 (442)
Q Consensus 423 L~V~~A 428 (442)
-.|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.87 E-value=3.6 Score=43.01 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCcChHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEeCCHHHHHHHHH-hc
Q 013503 256 RRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALN-LA 316 (442)
Q Consensus 256 ~rtLfV~NLp~~~Tee~L~elF~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~A~kAl~-Ln 316 (442)
...++|+ +|..+...+|.++|+.||. .+|+++.+. .|||.|.+.+.|..+++ +.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 4567777 9999999999999999996 456666553 79999999999999998 54
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.12 E-value=13 Score=38.64 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=42.4
Q ss_pred cceeeeeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hC
Q 013503 353 ARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CS 414 (442)
Q Consensus 353 ~~tL~V~NLp~~vTeedL~~~F~~~fG~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-Ln 414 (442)
...++|+ +|..+...+|.++|+. ||.| +|+.+.+ ..|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 3566666 8999999999999998 9954 4554422 269999999999999998 64
No 403
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.19 E-value=53 Score=25.84 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=42.2
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.-|+--++...+..+|++.+++.|| +|..|..+.-+.. .--|+|.+....+|....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~-~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG-EKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS-CEEEEEEECTTSCHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC-ceEEEEEcCCCCcHHHHHH
Confidence 3455567889999999999999899 7888877654421 2269999988777665443
No 404
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=27.58 E-value=74 Score=24.92 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=41.1
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
.-|+-.++...+..+|++.+++.|| +|..|..+.-+. ..--|+|.+....+|....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHHH
Confidence 3455567889999999999999898 788887765442 1236999998776655443
No 405
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=26.63 E-value=14 Score=28.49 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=26.2
Q ss_pred cchhhhhhhhhhhhhhhhhhhchhHHHHhhhhhcCCCccC
Q 013503 83 SKVKIFERVNQVQEGKKERKKETMAVVESASQDSAVSSAG 122 (442)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 122 (442)
+.+.|||+|...-..-.+-+ .+-+-.||.+||++|+.
T Consensus 9 ~~~~~~~~v~~~i~~L~~~~---~~Ta~~IAkkLg~sK~~ 45 (75)
T 1sfu_A 9 NDAEIFSLVKKEVLSLNTND---YTTAISLSNRLKINKKK 45 (75)
T ss_dssp CSHHHHHHHHHHHHTSCTTC---EECHHHHHHHTTCCHHH
T ss_pred chHHHHHHHHHHHHhCCCCc---chHHHHHHHHHCCCHHH
Confidence 45789999877655433222 16677899999999975
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=26.38 E-value=1.1e+02 Score=22.43 Aligned_cols=59 Identities=12% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 013503 364 KVTQADVKLFFESVCG----EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN-CSGVVLGSLPIRVSPSK 429 (442)
Q Consensus 364 ~vTeedL~~~F~~~fG----~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~-LnG~~l~Gr~L~V~~Ak 429 (442)
.+...+|..++....| .|-.+.+.. .|.||+-.. +.|..+++ |++..+.|+.++|..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 3666777777765233 456666632 277888865 45667777 88999999999998765
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.20 E-value=88 Score=27.83 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=40.3
Q ss_pred EEEEEcCCC-c--------ChHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEeCCHHH-HHHHHHh
Q 013503 258 TVYVSDIDQ-Q--------VTEEQLAALF--VGCGQVVDCRICGDPNSVLRFAFIEFTDEEG-ARAALNL 315 (442)
Q Consensus 258 tLfV~NLp~-~--------~Tee~L~elF--~~~G~I~~V~i~~d~~~skG~AFVeF~s~e~-A~kAl~L 315 (442)
++.|-|+|. . ....+|++.| ..|.++. ++....+.+++|+|.|+|.+.-. -..|+.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence 467788886 2 3347899977 8998865 66666666778999999987544 3556554
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=24.66 E-value=1.1e+02 Score=27.29 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=36.7
Q ss_pred ceeeeeCCCCC---------CCHHHHHHHh--hhcCCceEEEEEeccCCCcceEEEEEeCC-HHHHHHHH
Q 013503 354 RTIYCTNIDKK---------VTQADVKLFF--ESVCGEVYRLRLLGDYHHSTRIAFVEFVM-AESAIAAL 411 (442)
Q Consensus 354 ~tL~V~NLp~~---------vTeedL~~~F--~~~fG~I~~v~I~~d~g~~rG~AFVeF~s-~e~A~~Al 411 (442)
-++.|-|+|.. .+..+|++.| .. |.++. |+.+.+...++|+|.|+|.. -.--..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~-F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRG-FNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTT-CCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcC-CCCce-eEecccCCCCceeEEEEecCChHHHHHHH
Confidence 35677787761 3457899877 76 87766 44445554578999999985 33334444
No 409
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=24.38 E-value=94 Score=26.79 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=41.4
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
.-|+--++...+..+|++.++++|| .|..|..+.-.+. .--|||.+....+|....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g-~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNG-TKKAYVRLTADYDALDIA 136 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTS-CEEEEEEECTTCCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-ceEEEEEeCCCCcHHHHH
Confidence 3455567889999999999999898 7888877665432 226999998766665543
No 410
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.05 E-value=1.5e+02 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHhhhcCCc---eEEEEEec-cC--CCcceEEEEEeCCHHHHHHH
Q 013503 363 KKVTQADVKLFFESVCGE---VYRLRLLG-DY--HHSTRIAFVEFVMAESAIAA 410 (442)
Q Consensus 363 ~~vTeedL~~~F~~~fG~---I~~v~I~~-d~--g~~rG~AFVeF~s~e~A~~A 410 (442)
..++..+|++...+.|+. +.-|.=++ .. ++++|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 568899999988877772 33332222 23 477788855 6666666543
No 411
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.21 E-value=1e+02 Score=26.98 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=42.1
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAALN 412 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al~ 412 (442)
.-|+--++...+..+|++.++.+|| .|..|..+.-.+. .--|||.+....+|....+
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~-~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDG-EKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSS-CEEEEEEECTTSCHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCC-ceEEEEEECCCCcHHHHHH
Confidence 3455567889999999999999898 7888877765542 2369999987766554443
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.06 E-value=1e+02 Score=26.76 Aligned_cols=56 Identities=13% Similarity=0.258 Sum_probs=41.0
Q ss_pred eeeeeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCcceEEEEEeCCHHHHHHHH
Q 013503 355 TIYCTNIDKKVTQADVKLFFESVCG-EVYRLRLLGDYHHSTRIAFVEFVMAESAIAAL 411 (442)
Q Consensus 355 tL~V~NLp~~vTeedL~~~F~~~fG-~I~~v~I~~d~g~~rG~AFVeF~s~e~A~~Al 411 (442)
.-|+--++...+..+|++.++.+|| .|..|..+.-.+. .--|||.+....+|....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g-~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITG-NKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS-CEEEEEEECSSSCHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCC-cEEEEEEcCCCCcHHHHH
Confidence 3445557788999999999999898 7888877655432 226999998766665543
No 413
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=20.73 E-value=1.4e+02 Score=24.11 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhhhcCCc---eEEEEEec-cC--CCcceEEEEEeCCHHHHHH
Q 013503 363 KKVTQADVKLFFESVCGE---VYRLRLLG-DY--HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 363 ~~vTeedL~~~F~~~fG~---I~~v~I~~-d~--g~~rG~AFVeF~s~e~A~~ 409 (442)
..++..+|++-..+.|+. +..|.=++ .. |+++|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 568899999988776762 23332222 23 578888865 667666654
No 414
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.20 E-value=1.7e+02 Score=23.81 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhhhcCCc---eEEEEEec-cC--CCcceEEEEEeCCHHHHHH
Q 013503 363 KKVTQADVKLFFESVCGE---VYRLRLLG-DY--HHSTRIAFVEFVMAESAIA 409 (442)
Q Consensus 363 ~~vTeedL~~~F~~~fG~---I~~v~I~~-d~--g~~rG~AFVeF~s~e~A~~ 409 (442)
..++..||++-..+.|+. +.-|.=++ .. |+++|||.| |++.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 367888998888776763 23332222 23 578888865 667766654
Done!