BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013506
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 336 bits (862), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 176/423 (41%), Positives = 253/423 (59%), Gaps = 18/423 (4%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ IGG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEW 308
E L+VTM+D+R A S PS R VE+P+VTWEDIGGL D+K++LQ+ V++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY 495
Query: 309 PIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGES 368
P++H F + G++P +G L +GPPGC G EL +M+ GES
Sbjct: 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555
Query: 369 EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK 428
EA +R F +AR AAP ++FFDE D + RGG+ +R+++ +LTEMDG+ K
Sbjct: 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615
Query: 429 VII 431
+
Sbjct: 616 NVF 618
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
E IGG L+EL+ +P+ + + K G+ +G+L YGPPG GKT L +A+ EC
Sbjct: 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQ 138
A+ I + GESE +RE F +A A P V+F DE+D++ R
Sbjct: 537 ANFISIKGPELLTMWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGD 592
Query: 139 DV----RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXX 194
R+ +Q+ T MD K +V ++ +TNR D IDPA+ R GR D
Sbjct: 593 GGGAADRVINQILTEMDGMSTKK----NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648
Query: 195 XXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240
R ILK +K P+ +VDLE +A NG+ GADL +C+ A
Sbjct: 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++DIGG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 335 bits (860), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 253/423 (59%), Gaps = 18/423 (4%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ +GG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEW 308
E L+VTM+D+R A S PS R VE+P+VTWEDIGGL D+K++LQ+ V++
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY 495
Query: 309 PIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGES 368
P++H F + G++P +G L +GPPGC G EL +M+ GES
Sbjct: 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGES 555
Query: 369 EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK 428
EA +R F +AR AAP ++FFDE D + RGG+ +R+++ +LTEMDG+ K
Sbjct: 556 EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615
Query: 429 VII 431
+
Sbjct: 616 NVF 618
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
E IGG L+EL+ +P+ + + K G+ +G+L YGPPG GKT L +A+ EC
Sbjct: 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQ 138
A+ I + GESE +RE F +A A P V+F DE+D++ R
Sbjct: 537 ANFISIKGPELLTMWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGD 592
Query: 139 DV----RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXX 194
R+ +Q+ T MD K +V ++ +TNR D IDPA+ R GR D
Sbjct: 593 GGGAADRVINQILTEMDGMSTKK----NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648
Query: 195 XXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240
R ILK +K P+ +VDLE +A NG+ GADL +C+ A
Sbjct: 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++D+GG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 175/286 (61%), Gaps = 18/286 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ IGG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGG 294
E L+VTM+D+R A S PS R VE+P+VTWEDIGG
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++DIGG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 175/286 (61%), Gaps = 18/286 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ IGG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGG 294
E L+VTM+D+R A S PS R VE+P+VTWEDIGG
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++DIGG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 231 bits (590), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 175/286 (61%), Gaps = 18/286 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ IGG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGG 294
E L+VTM+D+R A S PS R VE+P+VTWEDIGG
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGG 481
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++DIGG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/262 (42%), Positives = 159/262 (60%), Gaps = 18/262 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ +GG R + ++E++ PL + + + +G+K PRG+LLYGPPGTGKT + RAV E G
Sbjct: 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-E 137
A +I+ + GESE LR+AF +A +A P+++FIDE+DA+ P+R+ E
Sbjct: 264 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA----PAIIFIDELDAIAPKREKTHGE 319
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
+ RI SQL TLMD K HV+V+A+TNR ++IDPALRR GRFD
Sbjct: 320 VERRIVSQLLTLMDGLKQRA----HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD------- 250
R EIL+++TK + L +VDLE +A +G+VGADL ALC EA + A+++ D
Sbjct: 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435
Query: 251 --ANECAGVLSVTMEDWRHARS 270
E L+VTM+D+R A S
Sbjct: 436 TIDAEVMNSLAVTMDDFRWALS 457
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+V ++D+GG R ++++ VE P++H F +G+ P RG LL+GPPG
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G E+ S GESE+ LR F+ A AP+IIF DE D + KR T
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR---EKT 316
Query: 406 SITVGERLLSTLLTEMDGLEQ-AKVII 431
V R++S LLT MDGL+Q A VI+
Sbjct: 317 HGEVERRIVSQLLTLMDGLKQRAHVIV 343
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 147/266 (55%), Gaps = 23/266 (8%)
Query: 27 AVEALRELITF----PLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82
A+E +RE +T P+ Q + LGL P G+LL GPPG GKT L +AV E G +
Sbjct: 14 ALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFI 73
Query: 83 VISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE-QDVR 141
+ + +VGESE+A+R+ F +A + A P V+F DE+DALCPRR R VR
Sbjct: 74 SVKGPELLNMYVGESERAVRQVFQRAKNSA----PCVIFFDEVDALCPRRSDRETGASVR 129
Query: 142 IASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXRFE 201
+ +QL T MD + + V ++A+TNR D IDPA+ R GR D R
Sbjct: 130 VVNQLLTEMDGLEARQ----QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185
Query: 202 ILKLYTK---KVPLDANVDLEAIATS--CNGYVGADLEALCREATMSAVK----RSSDAN 252
ILK TK K PLDA+V+LEAIA C+ Y GADL AL REA++ A++ R N
Sbjct: 186 ILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGN 245
Query: 253 ECAGVLSVTMEDWRHARSVVGPSITR 278
E G L V+ + + A V SI++
Sbjct: 246 E-KGELKVSHKHFEEAFKKVRSSISK 270
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXX 340
++ +P VTW DIG L D++++L A+ P+++ F LG+ G LL GPPGC
Sbjct: 1 SMTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60
Query: 341 XXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400
G EL +MYVGESE +R FQRA+ +AP +IFFDE D + +R
Sbjct: 61 AKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR- 119
Query: 401 GSSSTSITVGERLLSTLLTEMDGLE 425
S R+++ LLTEMDGLE
Sbjct: 120 --SDRETGASVRVVNQLLTEMDGLE 142
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 137/256 (53%), Gaps = 24/256 (9%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
E IGG ++ +RE++ PL + +K+G++ P+G+LLYGPPGTGKT L +AV E
Sbjct: 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN 76
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH---- 134
A + + K +GE +++ F A A PS++FIDEIDA+ +R
Sbjct: 77 ATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKA----PSIIFIDEIDAIAAKRTDALTG 132
Query: 135 --RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXX 192
R Q R QL MD V ++ +TNR D +DPA+ R GRFD
Sbjct: 133 GDREVQ--RTLMQLLAEMDGFDARG----DVKIIGATNRPDILDPAILRPGRFDRIIEVP 186
Query: 193 XXXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN 252
R EILK++T+K+ L +V+LE IA G VGA+L+A+C EA M+A++ D
Sbjct: 187 APDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD-- 244
Query: 253 ECAGVLSVTMEDWRHA 268
VTM+D+R A
Sbjct: 245 ------YVTMDDFRKA 254
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 78/143 (54%)
Query: 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXX 342
E P V +EDIGGL +++++ VE P+KH F ++GI P +G LL+GPPG
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69
Query: 343 XXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGS 402
G+EL ++GE +L+++ F+ A+ APSIIF DE D + AKR +
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 403 SSTSITVGERLLSTLLTEMDGLE 425
+ +R L LL EMDG +
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFD 152
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 140/264 (53%), Gaps = 29/264 (10%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+GG A+E L+E++ F L S+ ++G + P+G+LL GPPGTGKT L RAV E
Sbjct: 18 VGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP 76
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-------D 133
IS + VG +R+ F+QA +HA P +VFIDEIDA+ R
Sbjct: 77 FFHISGSDFVELFVGVGAARVRDLFAQAKAHA----PCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXX 193
REQ + +QL MD S ++V+A+TNR D +DPAL R GRFD
Sbjct: 133 DEREQTL---NQLLVEMDGF----DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 194 XXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253
R +IL+++T+ PL +V+LE IA G+VGADLE L EA + A + D
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--- 242
Query: 254 CAGVLSVTMEDWRHA--RSVVGPS 275
+TM+D+ A R + GP+
Sbjct: 243 -----KITMKDFEEAIDRVIAGPA 261
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+VT++D+GG + ++L++ VE+ +K + F+R+G +G LL GPPG
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA 70
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G++ ++VG A +R+ F +A+ AP I+F DE D VG RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 406 SITVGERLLSTLLTEMDGLEQAKVII 431
E+ L+ LL EMDG + + II
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGII 156
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 139/264 (52%), Gaps = 29/264 (10%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+GG A+E L+E++ F L S+ ++G + P+G+LL GPPGTG T L RAV E
Sbjct: 18 VGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANVP 76
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-------D 133
IS + VG +R+ F+QA +HA P +VFIDEIDA+ R
Sbjct: 77 FFHISGSDFVELFVGVGAARVRDLFAQAKAHA----PCIVFIDEIDAVGRHRGAGLGGGH 132
Query: 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXX 193
REQ + +QL MD S ++V+A+TNR D +DPAL R GRFD
Sbjct: 133 DEREQTL---NQLLVEMDGF----DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDP 185
Query: 194 XXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253
R +IL+++T+ PL +V+LE IA G+VGADLE L EA + A + D
Sbjct: 186 PDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--- 242
Query: 254 CAGVLSVTMEDWRHA--RSVVGPS 275
+TM+D+ A R + GP+
Sbjct: 243 -----KITMKDFEEAIDRVIAGPA 261
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
+VT++D+GG + ++L++ VE+ +K + F+R+G +G LL GPPG
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVA 70
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G++ ++VG A +R+ F +A+ AP I+F DE D VG RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 406 SITVGERLLSTLLTEMDGLEQAKVII 431
E+ L+ LL EMDG + + II
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGII 156
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 123/238 (51%), Gaps = 16/238 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ IGG + LRE+I PL Q++G+K P+G+LLYGPPGTGKT L +AV G
Sbjct: 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240
Query: 79 AHLTVISPHS-VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR----- 132
A+ + SP S + ++GES + +RE F+ A H +P ++F+DE+DA+ RR
Sbjct: 241 ANF-IFSPASGIVDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGT 295
Query: 133 DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXX 192
RE R +L T MD ++ ++ +TNR D +DPAL R GR D
Sbjct: 296 SADREIQ-RTLMELLTQMDGF----DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
Query: 193 XXXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250
R EI K++T KV D EA +G+ GAD+ EA A++ D
Sbjct: 351 LPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 274 PSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPP 333
P + + E ++T++ IGGL + ++L++ +E P+K+ F R+GI P +G LL+GPP
Sbjct: 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPP 224
Query: 334 GCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEAD 393
G + + Y+GES ++R F A+ P IIF DE D
Sbjct: 225 GTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVD 284
Query: 394 VVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---QAKVII 431
+G +R +++ +R L LLT+MDG + Q K+I+
Sbjct: 285 AIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIM 325
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 134/251 (53%), Gaps = 14/251 (5%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
+ +GG ++ ++E+I P+ + + LG+ P+G++LYGPPGTGKT L RAV
Sbjct: 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL-CPRRDHRRE 137
+S + + ++GE + +RE F A HA PS++F+DEID++ R +
Sbjct: 208 CKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSTRVEGSGG 263
Query: 138 QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXX 197
D + + L++ +TS ++ ++ +TNR+D +DPAL R GR D
Sbjct: 264 GDSEVQRTMLELLNQLDGFETS-KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322
Query: 198 XRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGV 257
R EIL+++++K+ L ++L +A NG GAD++ +C EA M A++
Sbjct: 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR-------- 374
Query: 258 LSVTMEDWRHA 268
+ VT ED+ A
Sbjct: 375 IHVTQEDFELA 385
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%)
Query: 274 PSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPP 333
P ++ + ++P T++ +GGL K++++ +E P+KH F LGI+ +G +L+GPP
Sbjct: 132 PLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPP 191
Query: 334 GCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEAD 393
G GAEL Y+GE ++R F AR APSIIF DE D
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 394 VVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI 430
+G+ R S + +R + LL ++DG E +K I
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 142/262 (54%), Gaps = 14/262 (5%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+GG +E L E I P+ + + + +G++ P+G L+YGPPGTGKT L RA + A
Sbjct: 183 VGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT 242
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQD 139
++ + + ++GE K +R+AF+ A A P+++FIDE+DA+ +R D + D
Sbjct: 243 FLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA----PTIIFIDELDAIGTKRFDSEKSGD 298
Query: 140 VRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXR 199
+ + L+ + +S V V+A+TNRVD +DPAL RSGR D R
Sbjct: 299 REVQRTMLELL-NQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSR 357
Query: 200 FEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLS 259
+IL+++++K+ D +++ + +A S + + GA L+A+ EA M A++ G S
Sbjct: 358 AQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN--------GQSS 409
Query: 260 VTMEDWRHARSVVGPSITRGVT 281
V ED+ S V ++ V+
Sbjct: 410 VKHEDFVEGISEVQARKSKSVS 431
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%)
Query: 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXX 342
E P T+ D+GGL ++L +A+ P+K + F +GI +GAL++GPPG
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
Query: 343 XXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGS 402
+L MY+GE L+R+ F A+ AP+IIF DE D +G KR S
Sbjct: 234 ACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293
Query: 403 SSTSITVGERLLSTLLTEMDGL 424
+ +R + LL ++DG
Sbjct: 294 EKSGDREVQRTMLELLNQLDGF 315
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 92/154 (59%)
Query: 278 RGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXX 337
R VE+P+VTWEDIGGL D+K++LQ+ V++P++H F + G++P +G L +GPPGC
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 338 XXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397
G EL +M+ GESEA +R F +AR AAP ++FFDE D +
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431
RGG+ +R+++ +LTEMDG+ K +
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
E IGG L+EL+ +P+ + + K G+ +G+L YGPPG GKT L +A+ EC
Sbjct: 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74
Query: 79 AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQ 138
A+ I + GESE +RE F +A A P V+F DE+D++ R
Sbjct: 75 ANFISIKGPELLTMWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGD 130
Query: 139 DV----RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXX 194
R+ +Q+ T MD K +V ++ +TNR D IDPA+ R GR D
Sbjct: 131 GGGAADRVINQILTEMDGMSTKK----NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186
Query: 195 XXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREA 240
R ILK +K P+ +VDLE +A NG+ GADL +C+ A
Sbjct: 187 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 135/253 (53%), Gaps = 14/253 (5%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
IGG + ++ ++E + PL + +++G+K P+G++LYG PGTGKT L +AV + A
Sbjct: 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT 243
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQD 139
I + + ++G+ + R+ F A +A PS+VFIDEIDA+ +R D +
Sbjct: 244 FLRIVGSELIQKYLGDGPRLCRQIFKVAGENA----PSIVFIDEIDAIGTKRYDSNSGGE 299
Query: 140 VRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXR 199
I + L++ V V+ +TN+++ +DPAL R GR D +
Sbjct: 300 REIQRTMLELLNQLD-GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTK 358
Query: 200 FEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLS 259
+IL ++T K+ L +V+LE + T+ + GAD++A+C EA + A++ +
Sbjct: 359 KKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR--------MQ 410
Query: 260 VTMEDWRHARSVV 272
VT ED++ A+ V
Sbjct: 411 VTAEDFKQAKERV 423
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%)
Query: 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXX 344
P ++ DIGGL ++++++VE P+ H + +GI P +G +L+G PG
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 345 XXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS 404
G+EL Y+G+ L R F+ A APSI+F DE D +G KR S+S
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 405 TSITVGERLLSTLLTEMDGLE---QAKVII 431
+R + LL ++DG + KVI+
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIM 326
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 122/233 (52%), Gaps = 19/233 (8%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+ G A E + EL+ + L S+ QKLG K P+G+L+ GPPGTGKT L +A+ E
Sbjct: 14 VAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD------- 133
IS + VG +R+ F QA A P ++FIDEIDA+ +R
Sbjct: 73 FFTISGSDFVEMFVGVGASRVRDMFEQAKKAA----PCIIFIDEIDAVGRQRGAGLGGGH 128
Query: 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXX 193
REQ + +Q+ MD + ++ ++V+A+TNR D +DPAL R GRFD
Sbjct: 129 DEREQTL---NQMLVEMDGFEGNE----GIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 194 XXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
R +ILK++ ++VPL ++D IA G+ GADL L EA + A +
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 74/146 (50%), Gaps = 1/146 (0%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
K T+ D+ G + K+++ + VE+ ++ + F +LG +G L+ GPPG
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
G++ M+VG + +R+ F++A+ AAP IIF DE D VG +RG
Sbjct: 67 GEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126
Query: 406 SITVGERLLSTLLTEMDGLEQAKVII 431
E+ L+ +L EMDG E + II
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGII 152
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 118/236 (50%), Gaps = 27/236 (11%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+ GN A E + E++ F L Y + LG K P+G+LL GPPGTGKT L +AV E
Sbjct: 13 MAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-------- 132
+ S + VG +R+ F A A PS++FIDEIDA+ R
Sbjct: 72 FFSMGGSSFIEMFVGLGASRVRDLFETAKKQA----PSIIFIDEIDAIGKSRAAGGVVSG 127
Query: 133 DHRREQDVRIASQLFTLMDS----NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXX 188
+ REQ + +QL MD N P V+V+A+TNR + +DPAL R GRFD
Sbjct: 128 NDEREQTL---NQLLAEMDGFGSENAP-------VIVLAATNRPEILDPALMRPGRFDRQ 177
Query: 189 XXXXXXXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244
R EILK++ K V L +V+L+ +A G GADL + EA + A
Sbjct: 178 VLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLA 233
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 4/155 (2%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXX 339
+ E P V ++D+ G + K+++ + V++ +K+ ++ LG +G LL GPPG
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTL 59
Query: 340 XXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399
G+ M+VG + +R+ F+ A+ APSIIF DE D +G R
Sbjct: 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSR 119
Query: 400 -GGSSSTSITVGERLLSTLLTEMDGL--EQAKVII 431
G + E+ L+ LL EMDG E A VI+
Sbjct: 120 AAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 12/230 (5%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+GG + +E LRE++ PLL + LG+ P+G+LLYGPPGTGKT RAV A
Sbjct: 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT 270
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL-CPRRDHRREQD 139
+ + + +VGE + +RE F A + K ++F DEIDA+ R D D
Sbjct: 271 FIRVIGSELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGD 326
Query: 140 ---VRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXX 196
R +L T +D P ++ V+ +TNR + +DPAL R GR D
Sbjct: 327 NEVQRTMLELITQLDGFDPRG----NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDL 382
Query: 197 XXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
R I ++++K + ++ + E I+ C GA+L ++C EA M A++
Sbjct: 383 EGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 77/154 (50%)
Query: 272 VGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHG 331
+ PS+T E P VT+ D+GG +D +KL++ VE P+ F+ LGI P +G LL+G
Sbjct: 191 IDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYG 250
Query: 332 PPGCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDE 391
PPG G+EL YVGE ++R F+ AR IIFFDE
Sbjct: 251 PPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE 310
Query: 392 ADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425
D VG R + +R + L+T++DG +
Sbjct: 311 IDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 130/249 (52%), Gaps = 17/249 (6%)
Query: 7 IMSEHNEKWKAEEA-IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTG 65
+M E NEK A +GG + +RE + PL+ + +++G+ PRG+LLYGPPGTG
Sbjct: 160 VMGE-NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTG 218
Query: 66 KTSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDE 124
KT LV+AV A + V VHK ++GE + +R+ F A +A PS++FIDE
Sbjct: 219 KTMLVKAVANSTKAAFIRVNGSEFVHK-YLGEGPRMVRDVFRLARENA----PSIIFIDE 273
Query: 125 IDALCPRR-DHRREQD---VRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALR 180
+D++ +R D + D RI +L T MD S +V V+ +TNR D +DPAL
Sbjct: 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST----NVKVIMATNRADTLDPALL 329
Query: 181 RSGRFDXXXXX-XXXXXXXRFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCRE 239
R GR D R I K+ L DL+++ + GA + A+ +E
Sbjct: 330 RPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 389
Query: 240 ATMSAVKRS 248
A + AV+++
Sbjct: 390 AGLRAVRKN 398
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 24/230 (10%)
Query: 211 PLDANVDLEAIATSCNG--YVGADLEALCRE---ATMS-AVKRSSDANECAGVLSVTMED 264
P+D N I +S G YV L L RE +MS A+ R S+A ++ + D
Sbjct: 102 PIDQNT---GIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNA-----LVDILPPD 153
Query: 265 WRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPV 324
+ SV+G + E P VT+ D+GGL K+++++AVE P+ + + ++GI P
Sbjct: 154 SDSSISVMGEN-------EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPP 206
Query: 325 RGALLHGPPGCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAP 384
RG LL+GPPG G+E Y+GE ++R+ F+ AR AP
Sbjct: 207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP 266
Query: 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA---KVII 431
SIIF DE D + KR + + S +R+L LLT+MDG +Q+ KVI+
Sbjct: 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIM 316
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 39 LLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98
L S+ ++G + P+G+LL GPPG GKT L RAV E S + VG
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRR-------DHRREQDVRIASQLFTLMD 151
+R+ F A HA P +VFIDEIDA+ +R + REQ + +QL MD
Sbjct: 95 ARVRDLFETAKRHA----PCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMD 147
Query: 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXRFEILKLYTKKVP 211
+ +VV+A+TNR D +DPAL R GRFD R +IL+++ + P
Sbjct: 148 GFEKDTA----IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP 203
Query: 212 LDANVDLEAIATSCNGYVGAD 232
L +VDL +A G+VGAD
Sbjct: 204 LAEDVDLALLAKRTPGFVGAD 224
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXX 339
V E PKVT++D+ G + K++L++ VE+ +K+ + F +G +G LL GPPG
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64
Query: 340 XXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399
G++ M+VG A +R+ F+ A+ AP I+F DE D VG KR
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431
G E+ L+ LL EMDG E+ I+
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 156
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 102/201 (50%), Gaps = 18/201 (8%)
Query: 39 LLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98
L S+ ++G + P+G+LL GPPG GKT L RAV E S + VG
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRR-------DHRREQDVRIASQLFTLMD 151
+R+ F A HA P +VFIDEIDA+ +R + REQ + +QL MD
Sbjct: 119 ARVRDLFETAKRHA----PCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMD 171
Query: 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXRFEILKLYTKKVP 211
+ +VV+A+TNR D +DPAL R GRFD R +IL+++ + P
Sbjct: 172 GFEKDTA----IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP 227
Query: 212 LDANVDLEAIATSCNGYVGAD 232
L +VDL +A G+VGAD
Sbjct: 228 LAEDVDLALLAKRTPGFVGAD 248
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXX 339
V E PKVT++D+ G + K++L++ VE+ +K+ + F +G +G LL GPPG
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 340 XXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399
G++ M+VG A +R+ F+ A+ AP I+F DE D VG KR
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431
G E+ L+ LL EMDG E+ I+
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 18/197 (9%)
Query: 43 SQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALR 102
S+ ++G + P+G+LL GPPG GKT L RAV E S + VG +R
Sbjct: 63 SRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVR 122
Query: 103 EAFSQASSHALSGKPSVVFIDEIDALCPRR-------DHRREQDVRIASQLFTLMDSNKP 155
+ F A HA P +VFIDEIDA+ +R + REQ + +QL MD +
Sbjct: 123 DLFETAKRHA----PCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGFEK 175
Query: 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXRFEILKLYTKKVPLDAN 215
+VV+A+TNR D +DPAL R GRFD R +IL+++ + PL +
Sbjct: 176 DTA----IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED 231
Query: 216 VDLEAIATSCNGYVGAD 232
VDL +A G+VGAD
Sbjct: 232 VDLALLAKRTPGFVGAD 248
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXX 339
V E PKVT++D+ G + K++L++ VE+ +K+ + F +G +G LL GPPG
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 340 XXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399
G++ M+VG A +R+ F+ A+ AP I+F DE D VG KR
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431
G E+ L+ LL EMDG E+ I+
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 101/197 (51%), Gaps = 18/197 (9%)
Query: 43 SQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALR 102
S+ ++G + P+G+LL GPPG GKT L RAV E S + VG +R
Sbjct: 54 SRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVR 113
Query: 103 EAFSQASSHALSGKPSVVFIDEIDALCPRR-------DHRREQDVRIASQLFTLMDSNKP 155
+ F A HA P +VFIDEIDA+ +R + REQ + +QL MD +
Sbjct: 114 DLFETAKRHA----PCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---NQLLVEMDGFEK 166
Query: 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXRFEILKLYTKKVPLDAN 215
+VV+A+TNR D +DPAL R GRFD R +IL+++ + PL +
Sbjct: 167 DTA----IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED 222
Query: 216 VDLEAIATSCNGYVGAD 232
VDL +A G+VGAD
Sbjct: 223 VDLALLAKRTPGFVGAD 239
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 1/152 (0%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXX 339
V E PKVT++D+ G + K++L++ VE+ +K+ + F +G +G LL GPPG
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 340 XXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399
G++ M+VG A +R+ F+ A+ AP I+F DE D VG KR
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431
G E+ L+ LL EMDG E+ I+
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 171
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 132/266 (49%), Gaps = 17/266 (6%)
Query: 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWP-RGLLLYGPPGTGKTSLVRAVVREC 77
E I G A ++E++ +P+L GL+ P +G+LL+GPPGTGKT + + + +
Sbjct: 84 EDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141
Query: 78 GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRR 136
GA IS S+ VGE EK +R F+ A +P+V+FIDEID+L +R D
Sbjct: 142 GATFFSISASSLTSKWVGEGEKMVRALFAVARCQ----QPAVIFIDEIDSLLSQRGDGEH 197
Query: 137 EQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXX 196
E RI ++ +D + +S ++VV +TNR ID A RR R
Sbjct: 198 ESSRRIKTEFLVQLDGA--TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEA 253
Query: 197 XXRFEI-LKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECA 255
R +I + L +K+ + ++E I + + GAD+ LCREA++ ++ A+
Sbjct: 254 SARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIAT 313
Query: 256 ----GVLSVTMEDWRHARSVVGPSIT 277
V + D+ +A V PS++
Sbjct: 314 ITPDQVRPIAYIDFENAFRTVRPSVS 339
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXX 344
P V WEDI G+ K +++ V WP+ F+ L P +G LL GPPG
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCI 137
Query: 345 XXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS 404
+ L S +VGE E ++R F AR P++IF DE D + ++RG
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197
Query: 405 TSITVGERLLSTLLTEMDG 423
S R+ + L ++DG
Sbjct: 198 ES---SRRIKTEFLVQLDG 213
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 132/292 (45%), Gaps = 19/292 (6%)
Query: 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGK 66
++ N KW + G A EAL+E + P+ + W RG+LL+GPPGTGK
Sbjct: 3 VIERPNVKW---SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGK 58
Query: 67 TSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEI 125
+ L +AV E + IS + +GESEK ++ F A + KPS++FIDEI
Sbjct: 59 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN----KPSIIFIDEI 114
Query: 126 DALC-PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGR 184
D+LC R ++ E RI ++ M ++V+ +TN +D A+RR R
Sbjct: 115 DSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPWVLDSAIRR--R 169
Query: 185 FDXXXXXXXXXXXXRFEILKLY--TKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242
F+ R + KL+ T + L D + +GY GAD+ + R+A M
Sbjct: 170 FEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVRDALM 228
Query: 243 SAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGG 294
V++ A V + D H + + G I ++TW D+ G
Sbjct: 229 QPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAI-EMTWMDVPG 279
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGC-XXX 338
+ +E P V W D+ GL K+ L++AV PIK F+ +P RG LL GPPG
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSY 60
Query: 339 XXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398
++L S ++GESE L++N FQ AR PSIIF DE D +
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 399 RGGSSSTSITVGERLLSTLLTEMDGL 424
R + S + R+ + L +M G+
Sbjct: 121 RSENESEA---ARRIKTEFLVQMQGV 143
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 111/229 (48%), Gaps = 12/229 (5%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWP-RGLLLYGPPGTGKTSLVRAVVRECGA 79
I G A +AL+E++ P + GL+ P +GLLL+GPPG GKT L RAV EC A
Sbjct: 23 IAGQDVAKQALQEMVILPSVRPELFT--GLRAPAKGLLLFGPPGNGKTLLARAVATECSA 80
Query: 80 HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQD 139
IS S+ +VG+ EK +R F+ A +PS++FIDE+D+L R +
Sbjct: 81 TFLNISAASLTSKYVGDGEKLVRALFAVARHM----QPSIIFIDEVDSLLSERSSSEHEA 136
Query: 140 VRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXXR 199
R F + P +VV+A+TNR +D A R RF R
Sbjct: 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194
Query: 200 FEILK--LYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
+L L + PLD L +A +GY G+DL AL ++A + ++
Sbjct: 195 ELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIR 242
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXX 345
KV W DI G K+ LQ+ V P F+ L +P +G LL GPPG
Sbjct: 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVA 75
Query: 346 XXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405
A L S YVG+ E L+R F AR PSIIF DE D + ++R S
Sbjct: 76 TECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135
Query: 406 SITVGERLLSTLLTEMDGL 424
+ RL + L E DGL
Sbjct: 136 A---SRRLKTEFLVEFDGL 151
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 120/256 (46%), Gaps = 15/256 (5%)
Query: 4 KGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPG 63
+G + + N KW E + G A EAL+E + P+ + K K G+LLYGPPG
Sbjct: 15 RGSLSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFP-HLFKGNRKPTSGILLYGPPG 70
Query: 64 TGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFID 123
TGK+ L +AV E + +S + +GESEK +++ F+ A + KPS++FID
Sbjct: 71 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN----KPSIIFID 126
Query: 124 EIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRS 182
E+DAL R + E RI ++L M+ V+V+ +TN +D A+RR
Sbjct: 127 EVDALTGTRGEGESEASRRIKTELLVQMNG---VGNDSQGVLVLGATNIPWQLDSAIRR- 182
Query: 183 GRFDXXXXXXXXXXXXRFEILKLYTKKVP-LDANVDLEAIATSCNGYVGADLEALCREAT 241
RF+ R + ++ P + D + GY G+D+ + ++A
Sbjct: 183 -RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 241
Query: 242 MSAVKRSSDANECAGV 257
M +++ A V
Sbjct: 242 MQPIRKIQSATHFKDV 257
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 4/149 (2%)
Query: 276 ITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGC 335
+ RG E P V WED+ GL K+ L++AV P+K F + P G LL+GPPG
Sbjct: 13 VPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGT 71
Query: 336 XXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVV 395
++L S ++GESE L++ F AR PSIIF DE D +
Sbjct: 72 GKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
Query: 396 GAKRGGSSSTSITVGERLLSTLLTEMDGL 424
RG S + R+ + LL +M+G+
Sbjct: 132 TGTRGEGESEA---SRRIKTELLVQMNGV 157
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 125/274 (45%), Gaps = 34/274 (12%)
Query: 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGK 66
++ N KW + G A EAL+E + P+ + W RG+LL+GPPGTGK
Sbjct: 125 VIERPNVKWSD---VAGLEGAKEALKEAVILPIKFPHLFTGKRTPW-RGILLFGPPGTGK 180
Query: 67 TSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEI 125
+ L +AV E + IS + +GESEK ++ F A + KPS++FIDEI
Sbjct: 181 SYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN----KPSIIFIDEI 236
Query: 126 DALC-PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGR 184
D+LC R ++ E RI ++ M ++V+ +TN +D A+RR R
Sbjct: 237 DSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPWVLDSAIRR--R 291
Query: 185 FDXXXXXXXXXXXXRFEILKLY---TKKVPLDANVDLEAIATSCNGYVGADLEALCREAT 241
F+ R + +L+ T+ +A D + + +GY GAD+ + R+A
Sbjct: 292 FEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEA--DFQELGRKTDGYSGADISIIVRDAL 349
Query: 242 MSAVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275
M V++ A H + V GPS
Sbjct: 350 MQPVRKVQSAT--------------HFKKVRGPS 369
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGC-XXX 338
+ +E P V W D+ GL K+ L++AV PIK F+ +P RG LL GPPG
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSY 182
Query: 339 XXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398
++L S ++GESE L++N FQ AR PSIIF DE D +
Sbjct: 183 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 242
Query: 399 RGGSSSTSITVGERLLSTLLTEMDGL 424
R + S + R+ + L +M G+
Sbjct: 243 RSENESEA---ARRIKTEFLVQMQGV 265
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 15/230 (6%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWP-RGLLLYGPPGTGKTSLVRAVVRECGA 79
I G A +AL+E++ P L GL+ P RGLLL+GPPG GKT L +AV E A
Sbjct: 117 IAGQDLAKQALQEIVILPSLRPELFT--GLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174
Query: 80 HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA-LCPRRDHRREQ 138
IS S+ +VGE EK +R F+ A +PS++FID++D+ LC RR+ +
Sbjct: 175 TFFNISAASLTSKYVGEGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDA 230
Query: 139 DVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXXXXX 198
R+ ++ D + + V+V+ +TNR +D A+ R RF
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDD--RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEET 286
Query: 199 RFEILKLYTKK--VPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
R +LK K PL +L +A +GY G+DL AL ++A + ++
Sbjct: 287 RLLLLKNLLCKQGSPL-TQKELAQLARMTDGYSGSDLTALAKDAALGPIR 335
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 262 MEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI 321
++++R+ S + I + V ++DI G K+ LQ+ V P F+ L
Sbjct: 87 LKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR- 145
Query: 322 SPVRGALLHGPPGCXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARL 381
+P RG LL GPPG A L S YVGE E L+R F AR
Sbjct: 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARE 205
Query: 382 AAPSIIFFDEAD-VVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427
PSIIF D+ D ++ +R G S RL + L E DG++ A
Sbjct: 206 LQPSIIFIDQVDSLLCERREGEHDAS----RRLKTEFLIEFDGVQSA 248
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 16/244 (6%)
Query: 7 IMSEH-NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTG 65
I+SE N KW E + G A EAL+E + P+ + K K G+LLYGPPGTG
Sbjct: 41 ILSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFP-HLFKGNRKPTSGILLYGPPGTG 96
Query: 66 KTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEI 125
K+ L +AV E + +S + +GESEK +++ F+ A + KPS++FID++
Sbjct: 97 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQV 152
Query: 126 DALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGR 184
DAL R + E RI ++L M+ V+V+ +TN +D A+RR R
Sbjct: 153 DALTGTRGEGESEASRRIKTELLVQMNG---VGNDSQGVLVLGATNIPWQLDSAIRR--R 207
Query: 185 FDXXXXXXXXXXXXRFEILKLYTKKVP-LDANVDLEAIATSCNGYVGADLEALCREATMS 243
F+ R + ++ P + D + GY G+D+ + ++A M
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
Query: 244 AVKR 247
+++
Sbjct: 268 PIRK 271
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 275 SITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPG 334
+++ + E P V WED+ GL K+ L++AV P+K F + P G LL+GPPG
Sbjct: 36 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPG 94
Query: 335 CXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADV 394
++L S ++GESE L++ F AR PSIIF D+ D
Sbjct: 95 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDA 154
Query: 395 VGAKRG-GSSSTSITVGERLLSTLLTEMDGL 424
+ RG G S S R+ + LL +M+G+
Sbjct: 155 LTGTRGEGESEAS----RRIKTELLVQMNGV 181
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 16/254 (6%)
Query: 7 IMSEH-NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTG 65
I+SE N KW E + G A EAL+E + P+ + K K G+LLYGPPGTG
Sbjct: 8 ILSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFP-HLFKGNRKPTSGILLYGPPGTG 63
Query: 66 KTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEI 125
K+ L +AV E + +S + +GESEK +++ F+ A + KPS++FID++
Sbjct: 64 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQV 119
Query: 126 DALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGR 184
DAL R + E RI ++L M+ V+V+ +TN +D A+RR R
Sbjct: 120 DALTGTRGEGESEASRRIKTELLVQMNG---VGNDSQGVLVLGATNIPWQLDSAIRR--R 174
Query: 185 FDXXXXXXXXXXXXRFEILKLYTKKVP-LDANVDLEAIATSCNGYVGADLEALCREATMS 243
F+ R + ++ P + D + GY G+D+ + ++A M
Sbjct: 175 FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 234
Query: 244 AVKRSSDANECAGV 257
+++ A V
Sbjct: 235 PIRKIQSATHFKDV 248
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXX 342
E P V WED+ GL K+ L++AV P+K F + P G LL+GPPG
Sbjct: 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPGTGKSYLAK 69
Query: 343 XXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGS 402
++L S ++GESE L++ F AR PSIIF D+ D + RG
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 403 SSTSITVGERLLSTLLTEMDGL 424
S + R+ + LL +M+G+
Sbjct: 130 ESEA---SRRIKTELLVQMNGV 148
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 16/244 (6%)
Query: 7 IMSEH-NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTG 65
I+SE N KW E + G A EAL+E + P+ + K K G+LLYGPPGTG
Sbjct: 26 ILSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFP-HLFKGNRKPTSGILLYGPPGTG 81
Query: 66 KTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEI 125
K+ L +AV E + +S + +GESEK +++ F+ A + KPS++FID++
Sbjct: 82 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQV 137
Query: 126 DALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGR 184
DAL R + E RI ++L M+ V+V+ +TN +D A+RR R
Sbjct: 138 DALTGTRGEGESEASRRIKTELLVQMNG---VGNDSQGVLVLGATNIPWQLDSAIRR--R 192
Query: 185 FDXXXXXXXXXXXXRFEILKLYTKKVP-LDANVDLEAIATSCNGYVGADLEALCREATMS 243
F+ R + ++ P + D + GY G+D+ + ++A M
Sbjct: 193 FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 252
Query: 244 AVKR 247
+++
Sbjct: 253 PIRK 256
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 275 SITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPG 334
+++ + E P V WED+ GL K+ L++AV P+K F + P G LL+GPPG
Sbjct: 21 ALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF-KGNRKPTSGILLYGPPG 79
Query: 335 CXXXXXXXXXXXXXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADV 394
++L S ++GESE L++ F AR PSIIF D+ D
Sbjct: 80 TGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDA 139
Query: 395 VGAKRG-GSSSTSITVGERLLSTLLTEMDGL 424
+ RG G S S R+ + LL +M+G+
Sbjct: 140 LTGTRGEGESEAS----RRIKTELLVQMNGV 166
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80
+ G A +RE + + L + +LG K P+G LL GPPG GKT L +AV E
Sbjct: 8 VAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP 66
Query: 81 LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-----HR 135
++ + G +R F +A + A P +V+IDEIDA+ +R
Sbjct: 67 FLAMAGAEFVEVIGGLGAARVRSLFKEARARA----PCIVYIDEIDAVGKKRSTTMSGFS 122
Query: 136 REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDXXXXXXXXX 195
++ + +QL MD + HV+V+ASTNR D +D AL R GR D
Sbjct: 123 NTEEEQTLNQLLVEMDG----MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178
Query: 196 XXXRFEILKLYTKKVPLDANVDL--EAIATSCNGYVGADLEALCREATMSAVK 246
R EI + + K + L + + +A G+ GAD+ +C EA + A +
Sbjct: 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAR 231
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 2/139 (1%)
Query: 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCXXXXXXXXXXX 346
V+++D+ G+ + K ++++ V++ +K F +LG +GALL GPPGC
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 347 XXXXXXXXXXGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGS-SST 405
GAE + G A +R+ F+ AR AP I++ DE D VG KR + S
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 406 SITVGERLLSTLLTEMDGL 424
S T E+ L+ LL EMDG+
Sbjct: 122 SNTEEEQTLNQLLVEMDGM 140
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 12/84 (14%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115
++L+GPPGTGKT+L + R A + IS V K +REA +A + +G
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 116 KPSVVFIDEIDALCPRRDHRREQD 139
+ +++F+DE+ R ++ +QD
Sbjct: 106 RRTILFVDEV-----HRFNKSQQD 124
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQAS 109
+K P L ++G G GK+ V R+ G + ++S + + GE K +R+ + +A+
Sbjct: 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 92
Query: 110 SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD-SNKPSKTSVP------- 161
G +FI+++DA R + V TLM+ ++ P+ +P
Sbjct: 93 EIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE 152
Query: 162 --HVVVVASTNRVDAIDPALRRSGRFD 186
V ++ + N + L R GR +
Sbjct: 153 NARVPIIVTGNDFSTLYAPLIRDGRME 179
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 9/125 (7%)
Query: 53 PRGLLLYGPPGTGKTSLVRAVVRECGA-HLTVISPHSVHKAHVGESEKALREAFSQASSH 111
P+ +L+ GP G GKT + R + + A + V + +VG+ ++ + ++
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 112 ALSG--KPSVVFIDEIDALCPRRDHRREQDVR--IASQLFTLMD----SNKPSKTSVPHV 163
A+ + +VFIDEID +C + ++ R + L L++ S K H+
Sbjct: 110 AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 164 VVVAS 168
+ +AS
Sbjct: 170 LFIAS 174
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115
LLL+GPPG GKT+L + E G +L V S ++ K G+ L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEG------- 91
Query: 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD-------SNKPSKTSVPHVVVVAS 168
++FIDEI L + E+ + A + F +MD + + + +P ++ +
Sbjct: 92 --DILFIDEIHRLS----RQAEEHLYPAMEDF-VMDIVIGQGPAARTIRLELPRFTLIGA 144
Query: 169 TNRVDAID-PALRRSG 183
T R I P L R G
Sbjct: 145 TTRPGLITAPLLSRFG 160
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115
LLL+GPPG GKT+L + E G +L V S ++ K G+ L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEG------- 91
Query: 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD-------SNKPSKTSVPHVVVVAS 168
++FIDEI L + E+ + A + F +MD + + + +P ++ +
Sbjct: 92 --DILFIDEIHRLS----RQAEEHLYPAMEDF-VMDIVIGQGPAARTIRLELPRFTLIGA 144
Query: 169 TNRVDAID-PALRRSG 183
T R I P L R G
Sbjct: 145 TTRPGLITAPLLSRFG 160
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115
LLL+GPPG GKT+L + E G +L V S ++ K G+ L + +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP--GDLAAILANSLEEG------- 91
Query: 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD-------SNKPSKTSVPHVVVVAS 168
++FIDEI L + E+ + A + F +MD + + + +P ++ +
Sbjct: 92 --DILFIDEIHRLS----RQAEEHLYPAMEDF-VMDIVIGQGPAARTIRLELPRFTLIGA 144
Query: 169 TNRVDAID-PALRRSG 183
T R I P L R G
Sbjct: 145 TTRPGLITAPLLSRFG 160
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGESEKALREAFSQASS-HA 112
+LL GP G+GKT + + + + + + S+ +A +VGE + + QAS +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 113 LSGKPSVVFIDEIDALCPRRDHR 135
+ +VFIDEID + ++R
Sbjct: 134 QKAQKGIVFIDEIDKISRLSENR 156
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 199 RFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVL 258
R +ILK++++K+ L ++L IA G GA+++ +C EA M A++ +
Sbjct: 16 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------V 67
Query: 259 SVTMEDWRHA 268
VT ED+ A
Sbjct: 68 HVTQEDFEMA 77
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGES-EKALREAFSQASSHAL 113
+LL GP G+GKT L + R T+ ++ +A +VGE E +++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 114 SGKPSVVFIDEIDALCPRRDH 134
+ +V+ID+ID + + D+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDN 134
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGES-EKALREAFSQASSHAL 113
+LL GP G+GKT L + R T+ ++ +A +VGE E +++ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 114 SGKPSVVFIDEIDALCPRRDH 134
+ +V+ID+ID + + D+
Sbjct: 114 KAQRGIVYIDQIDKISRKSDN 134
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 56 LLLYGPPGTGKTSLVRAVVRE 76
LL YGPPGTGKTS + A+ RE
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQAS---- 109
R +LYGPPG GKT+ V +E G + + V + + ++ A S
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA--GVKNALDNMSVVGY 135
Query: 110 ------SHALSGKPSVVFIDEIDAL 128
+ L+GK V+ +DE+D +
Sbjct: 136 FKHNEEAQNLNGKHFVIIMDEVDGM 160
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAHL 81
R +LL GPPGTGKT+L A+ +E G+ +
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKV 91
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 27 AVEALRELITFPLLYSSQAQKLG---LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83
A E +R I P + + + +K+ L RG++L GPPG+GKT ++ +R + V
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVV 1297
Query: 84 ISPHSVHKAHVGESEKAL----REAFSQASSHALSGKPS------VVFIDEIDALCPRRD 133
++ + +E L R +S L+ P V+F DEI+ P+ D
Sbjct: 1298 ----GINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLD 1351
Query: 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP 177
Q+V + L LM+ KT V + + V A +P
Sbjct: 1352 KYGSQNVVLF--LRQLMEKQGFWKTPENKWVTIERIHIVGACNP 1393
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAHL 81
R +LL GPPGTGKT+L A+ +E G+ +
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKV 105
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 21/164 (12%)
Query: 27 AVEALRELITFPLLYSSQAQKLG---LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83
A E +R I P + + + +K+ L RG++L GPPG+GKT ++ +R + V
Sbjct: 1019 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVV 1078
Query: 84 ISPHSVHKAHVGESEKAL----REAFSQASSHALSGKPS------VVFIDEIDALCPRRD 133
++ + +E L R +S L+ P V+F DEI+ P+ D
Sbjct: 1079 ----GINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN--LPKLD 1132
Query: 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP 177
Q+V + L LM+ KT V + + V A +P
Sbjct: 1133 KYGSQNVVLF--LRQLMEKQGFWKTPENKWVTIERIHIVGACNP 1174
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93
K ++ P LL G PG+GKTSL A+ E ++ VI + + H
Sbjct: 27 KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 73
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 56 LLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAH------VGESEKAL-REAFSQ 107
+L YGPPGTGKTS + A+ +E G L ++ + V E K R S+
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSK 120
Query: 108 ASSHALSGKP----SVVFIDEIDAL 128
S H L P ++ +DE D++
Sbjct: 121 PSKHDLENYPCPPYKIIILDEADSM 145
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 199 RFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVL 258
R +ILK++++K L ++L IA G GA+++ +C EA A++ +
Sbjct: 8 RLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRERR--------V 59
Query: 259 SVTMEDWRHA 268
VT ED+ A
Sbjct: 60 HVTQEDFEXA 69
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECG-AHLTVISPHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPP +GKT+L + E + + SP + +G SE A +A + A
Sbjct: 66 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM----IGFSETAKCQAMKKIFDDAYK 121
Query: 115 GKPSVVFIDEIDAL 128
+ S V +D+I+ L
Sbjct: 122 SQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECG-AHLTVISPHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPP +GKT+L + E + + SP + +G SE A +A + A
Sbjct: 67 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM----IGFSETAKCQAMKKIFDDAYK 122
Query: 115 GKPSVVFIDEIDAL 128
+ S V +D+I+ L
Sbjct: 123 SQLSCVVVDDIERL 136
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 34/156 (21%)
Query: 46 QKL--GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV---------HKAHV 94
QKL LK P L L GPPG GKTSL +++ + G IS V + +V
Sbjct: 100 QKLTKSLKGPI-LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYV 158
Query: 95 GESEKALREAFSQASSHALSGKPSVVF-IDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153
G + + +A GK + VF +DEID + D R + +S + ++D
Sbjct: 159 GAMPGRIIQGMKKA------GKLNPVFLLDEIDKMSS--DFRGDP----SSAMLEVLDPE 206
Query: 154 KPSKTS---------VPHVVVVASTNRVDAIDPALR 180
+ S S + V+ +A+ N + I LR
Sbjct: 207 QNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLR 242
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHAL 113
R + L G GTGKT + V+ G V++P+ + A + RE F + +
Sbjct: 30 RFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAE---FRELFPENAVEYF 86
Query: 114 SGKPSVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171
+ + D + +A P +D E+D I ++ L S S + V+VVAS +
Sbjct: 87 -----ISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSA 141
Query: 172 VDAI-DP 177
+ + DP
Sbjct: 142 IYGLGDP 148
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHAL 113
R + L G GTGKT + V+ G V++P+ + A + RE F + +
Sbjct: 29 RFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAE---FRELFPENAVEYF 85
Query: 114 SGKPSVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171
+ + D + +A P +D E+D I ++ L S S + V+VVAS +
Sbjct: 86 -----ISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSA 140
Query: 172 VDAI-DP 177
+ + DP
Sbjct: 141 IYGLGDP 147
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 199 RFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
R I ++++K + ++ + E I+ C GA+L ++C EA M A++
Sbjct: 13 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHL---TVISPHSVHKAHVGESEKALREAFSQASSHA 112
LL GPPGTGKT+ A+ R+ I ++ + + ++E A +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF---ARTAP 97
Query: 113 LSGKP-SVVFIDEIDAL 128
+ G P ++F+DE DAL
Sbjct: 98 IGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHL---TVISPHSVHKAHVGESEKALREAFSQASSHA 112
LL GPPGTGKT+ A+ R+ I ++ + + ++E A +
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEF---ARTAP 97
Query: 113 LSGKP-SVVFIDEIDAL 128
+ G P ++F+DE DAL
Sbjct: 98 IGGAPFKIIFLDEADAL 114
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 33 ELITFPLLYSSQAQKLGLK-WPRG--LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89
ELITF A KL LK P+ L GPP TGK+ L +++ G + + H
Sbjct: 108 ELITFI-----NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKS 162
Query: 90 H----------KAHVGESEKALREAFSQASSHALSGKP 117
H A V ++ A F +AL G P
Sbjct: 163 HFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYP 200
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.0 bits (71), Expect = 0.70, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 202 ILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRS 248
I T K+ L VDLE + GAD+ ++C+E+ M AV+ +
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGESEKALREAFSQASSH 111
R +L+ G PGTGKT++ + + G T I+ + + ++E AL +AF ++
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFRRSIGV 129
Query: 112 AL-SGKPSVVFIDEIDALCPR 131
+ +G V + EID + R
Sbjct: 130 RIKAGAVHTVSLHEIDVINSR 150
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 33 ELITFPLLYSSQAQKLGLK-WPRG--LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89
ELITF A KL LK P+ L GPP TGK+ L +++ G + + H
Sbjct: 105 ELITFI-----NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKS 159
Query: 90 H----------KAHVGESEKALREAFSQASSHALSGKP 117
H A V ++ A F +AL G P
Sbjct: 160 HFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYP 197
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 56 LLLYGP-PGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALS 114
++L+ P PGTGKT++ +A+ + A + ++ V + F+ A+S
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV----RGPLTNFASAAS--FD 103
Query: 115 GKPSVVFIDEID 126
G+ V+ IDE D
Sbjct: 104 GRQKVIVIDEFD 115
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78
N + +EA ++ F Y S QK GL LYG G GK+ L+ A+ E
Sbjct: 129 NNASRMEAFSAILDFVEQYPSAEQK-------GLYLYGDMGIGKSYLLAAMAHELS 177
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 56 LLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAHVGESE--KALREAFSQASSHA 112
LL GPPG GKT+ A+ RE G + H+ + + + +RE + +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWR----HNFLELNASDERGINVIREKVKEFARTK 104
Query: 113 LSGKPS--VVFIDEIDALCPRRDHRREQDVRIASQLFT-----LMDSNKPSKTSVP 161
G S ++F+DE DAL +Q +R ++F+ ++ N SK P
Sbjct: 105 PIGGASFKIIFLDEADALT----QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEP 156
>pdb|4AP8|A Chain A, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|B Chain B, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|C Chain C, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
pdb|4AP8|D Chain D, Crystal Structure Of Human Molybdopterin Synthase
Catalytic Subunit (Mocs2b)
Length = 135
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 307 EWPIKHSTAFSRLGISPVRGA 327
+WP+KH F RLG+ PV A
Sbjct: 76 KWPVKHIAVFHRLGLVPVSEA 96
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 50 LKWPRGLLLY-GPPGTGKTSLVRAVVRECGAH----LTVISPHSVHKAHVGESEKALR-- 102
+K P G++L GP G+GK++ + A ++E + LTV P +G+++ R
Sbjct: 163 IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222
Query: 103 EAFSQASSHALSGKPSVVFIDEIDAL 128
F++ L P VV + EI L
Sbjct: 223 XTFARGLRAILRQDPDVVXVGEIRDL 248
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 54 RGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGESEKALREAFSQASSH 111
R +L+ G PGTGKT++ + G T I+ + ++E AL +AF ++
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTE-ALTQAFRRSIGV 144
Query: 112 AL-SGKPSVVF---IDEIDALCPR 131
+ G P VV + EID + R
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVINSR 168
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG GKT+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG GKT+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG GKT+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|3VLF|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLF|D Chain D, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 88
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 199 RFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246
R I ++++K ++ + E I+ C GA+L ++C EA A++
Sbjct: 6 RANIFRIHSKSXSVERGIRWELISRLCPNSTGAELRSVCTEAGXFAIR 53
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG GKT+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT----VISPHSVHKAH 93
P LLYG GTGKT++ R V+R A + ++ P V+ H
Sbjct: 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG GKT+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98
+ PR ++L GP G GK++L++ + +E + H+ GE +
Sbjct: 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEED 49
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella
Burnetii
Length = 205
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98
++ P G GKTSLVRA+V+ A + + H+ G+ E
Sbjct: 10 FIISAPSGAGKTSLVRALVKAL-AEIKISISHTTRPKRPGDQE 51
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 20 AIGGNRAAVEALR----ELITFPLLYSSQAQKLGLKWPRGLLLY-GPPGTGKTSLVRAV- 73
A NR A R +++T L + K PRGL+L GP G+GK++ + A+
Sbjct: 85 AFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAML 144
Query: 74 --VRECGAH--LTVISPHSVHKAHVGESEKAL---RE------AFSQASSHALSGKPSVV 120
+ H LT+ P V ES+K L RE FS+A AL P ++
Sbjct: 145 DYLNNTKYHHILTIEDPIEF----VHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200
Query: 121 FIDEIDAL 128
+ E+ L
Sbjct: 201 LVGEMRDL 208
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFS 106
+LG+K L G GTGKT + V+ + VI+ + K G+ L+E F
Sbjct: 54 RLGVKHQ---TLLGATGTGKTFTISNVIAQVNKPTLVIAHN---KTLAGQLHSELKEFFP 107
Query: 107 QASSHALSGKPSVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164
+ V + D + +A P+ D E+D +I ++ L S + V+
Sbjct: 108 HNAVEYF-----VSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVI 162
Query: 165 VVASTN 170
+VAS +
Sbjct: 163 IVASVS 168
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 28/134 (20%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115
+L GP G GKT+L + E A++ + + K+ A+ S+
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKSG---DLAAILTNLSEG------- 107
Query: 116 KPSVVFIDEIDALCP---------RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166
++FIDEI L P D+R D+ I S + + K +P ++
Sbjct: 108 --DILFIDEIHRLSPAIEEVLYPAXEDYR--LDIIIGSG-----PAAQTIKIDLPKFTLI 158
Query: 167 ASTNRVDAIDPALR 180
+T R + LR
Sbjct: 159 GATTRAGXLSNPLR 172
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 12 NEKWKAEEAI--GGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTS 68
N K+ E I GNR A E ++E + + LG L P + +YG GTGKT
Sbjct: 4 NPKYTLENFIVGEGNRLAYEVVKEAL----------ENLGSLYNP--IFIYGSVGTGKTH 51
Query: 69 LVRA 72
L++A
Sbjct: 52 LLQA 55
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVHKAHVGESEKALREAFSQASSHALS 114
+LL GPPG G+T+L + E ++ V S P V + + +L
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE------------ 101
Query: 115 GKPSVVFIDEIDAL 128
+ V+FIDEI L
Sbjct: 102 -RGDVLFIDEIHRL 114
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 12 NEKWKAEEAI--GGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTS 68
N K+ E I GNR A E ++E + + LG L P + +YG GTGKT
Sbjct: 5 NPKYTLENFIVGEGNRLAYEVVKEAL----------ENLGSLYNP--IFIYGSVGTGKTH 52
Query: 69 LVRA 72
L++A
Sbjct: 53 LLQA 56
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 12 NEKWKAEEAI--GGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTS 68
N K+ E I GNR A E ++E + + LG L P + +YG GTGKT
Sbjct: 5 NPKYTLENFIVGEGNRLAYEVVKEAL----------ENLGSLYNP--IFIYGSVGTGKTH 52
Query: 69 LVRA 72
L++A
Sbjct: 53 LLQA 56
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 58 LYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117
L G GTGKT + V+ + VI+ + K G+ L+E F +
Sbjct: 37 LLGATGTGKTFTISNVIAQVNKPTLVIAHN---KTLAGQLYSELKEFFPHNAVEYF---- 89
Query: 118 SVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170
V + D + +A P+ D E+D +I ++ L S + V++VAS +
Sbjct: 90 -VSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVS 143
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 58 LYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117
L G GTGKT + V+ + VI+ + K G+ L+E F +
Sbjct: 37 LLGATGTGKTFTISNVIAQVNKPTLVIAHN---KTLAGQLYSELKEFFPHNAVEYF---- 89
Query: 118 SVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170
V + D + +A P+ D E+D +I ++ L S + V++VAS +
Sbjct: 90 -VSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVS 143
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 58 LYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117
L G GTGKT + V+ + VI+ + K G+ L+E F +
Sbjct: 37 LLGATGTGKTFTISNVIAQVNKPTLVIAHN---KTLAGQLYSELKEFFPHNAVEYF---- 89
Query: 118 SVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170
V + D + +A P+ D E+D +I ++ L S + V++VAS +
Sbjct: 90 -VSYYDYAQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVS 143
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 58 LYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117
L G GTGKT + V+ + VI+ + K G+ L+E F +
Sbjct: 37 LLGATGTGKTFTISNVIAQVNKPTLVIAHN---KTLAGQLYSELKEFFPHNAVEYF---- 89
Query: 118 SVVFID--EIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170
V + D + +A P+ D E+D +I ++ L S + V++VAS +
Sbjct: 90 -VSYYDYYQPEAYVPQTDTYIEKDAKINDEIDKLRHSATSALFERRDVIIVASVS 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,291,720
Number of Sequences: 62578
Number of extensions: 416950
Number of successful extensions: 1956
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 137
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)