Query 013506
Match_columns 441
No_of_seqs 302 out of 2676
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:32:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 9.1E-77 2E-81 538.4 37.7 412 17-436 188-654 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-67 2.6E-72 486.0 33.4 394 19-436 184-577 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 6.6E-57 1.4E-61 452.5 41.1 411 16-436 175-597 (733)
4 KOG0736 Peroxisome assembly fa 100.0 9.1E-57 2E-61 418.4 33.1 405 17-436 399-818 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 3.2E-52 6.8E-57 384.7 31.3 393 19-436 408-810 (952)
6 COG0464 SpoVK ATPases of the A 100.0 1.5E-42 3.2E-47 335.7 35.6 382 38-436 3-385 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 9.3E-43 2E-47 299.5 23.8 241 17-273 149-393 (406)
8 KOG0741 AAA+-type ATPase [Post 100.0 2.2E-41 4.8E-46 303.4 24.3 409 13-436 214-648 (744)
9 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-41 3.3E-46 313.7 23.3 255 6-277 424-679 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 5.3E-39 1.2E-43 292.9 23.8 260 8-278 503-775 (802)
11 KOG0738 AAA+-type ATPase [Post 100.0 3.2E-37 6.9E-42 267.2 22.3 261 7-277 203-474 (491)
12 KOG0736 Peroxisome assembly fa 100.0 5.5E-36 1.2E-40 280.1 23.9 259 10-278 666-938 (953)
13 KOG0734 AAA+-type ATPase conta 100.0 4.1E-36 8.8E-41 270.0 21.0 238 16-270 301-539 (752)
14 KOG0739 AAA+-type ATPase [Post 100.0 2.7E-36 5.8E-41 252.5 13.1 236 3-251 120-357 (439)
15 TIGR02639 ClpA ATP-dependent C 100.0 4.1E-33 9E-38 279.5 30.7 370 16-438 179-604 (731)
16 KOG0652 26S proteasome regulat 100.0 4E-34 8.6E-39 235.3 18.4 238 18-268 170-408 (424)
17 COG1223 Predicted ATPase (AAA+ 100.0 7.5E-34 1.6E-38 233.4 19.1 234 16-271 118-354 (368)
18 KOG0727 26S proteasome regulat 100.0 3.2E-33 6.9E-38 228.9 20.3 239 18-272 154-396 (408)
19 KOG0728 26S proteasome regulat 100.0 1.7E-33 3.8E-38 230.2 18.6 247 12-271 140-387 (404)
20 PTZ00454 26S protease regulato 100.0 6.7E-33 1.5E-37 255.6 24.5 246 9-273 138-387 (398)
21 KOG0735 AAA+-type ATPase [Post 100.0 8.1E-33 1.7E-37 256.6 22.8 230 11-251 662-892 (952)
22 PRK11034 clpA ATP-dependent Cl 100.0 3.5E-32 7.7E-37 268.4 28.5 369 16-437 183-607 (758)
23 COG0542 clpA ATP-binding subun 100.0 6.3E-32 1.4E-36 260.2 25.3 374 16-438 167-644 (786)
24 KOG0731 AAA+-type ATPase conta 100.0 2.3E-32 5E-37 261.0 21.7 238 16-270 308-551 (774)
25 PRK03992 proteasome-activating 100.0 1.1E-31 2.4E-36 249.6 25.0 250 9-277 124-377 (389)
26 KOG0737 AAA+-type ATPase [Post 100.0 4.9E-32 1.1E-36 235.0 19.5 228 16-251 89-318 (386)
27 TIGR01243 CDC48 AAA family ATP 100.0 2.7E-31 5.9E-36 267.5 27.1 257 10-277 447-715 (733)
28 KOG0726 26S proteasome regulat 100.0 1.4E-32 2.9E-37 229.7 14.3 247 12-271 178-425 (440)
29 KOG0729 26S proteasome regulat 100.0 4.7E-32 1E-36 223.8 16.2 233 9-249 170-403 (435)
30 PTZ00361 26 proteosome regulat 100.0 3.7E-31 8E-36 245.2 23.9 241 16-272 180-424 (438)
31 CHL00195 ycf46 Ycf46; Provisio 100.0 6E-31 1.3E-35 247.6 25.3 238 16-275 225-466 (489)
32 COG1222 RPT1 ATP-dependent 26S 100.0 5.5E-32 1.2E-36 233.3 14.5 156 281-436 142-298 (406)
33 TIGR03345 VI_ClpV1 type VI sec 100.0 8.6E-30 1.9E-34 256.6 30.6 184 16-228 184-389 (852)
34 COG0464 SpoVK ATPases of the A 100.0 2.1E-30 4.6E-35 251.0 24.9 250 9-276 235-487 (494)
35 CHL00095 clpC Clp protease ATP 100.0 8.5E-30 1.8E-34 258.4 28.1 373 16-438 176-662 (821)
36 KOG0732 AAA+-type ATPase conta 100.0 3.2E-30 7E-35 252.8 23.2 373 16-396 262-666 (1080)
37 COG0465 HflB ATP-dependent Zn 100.0 1.9E-30 4.1E-35 243.9 20.4 238 16-270 147-388 (596)
38 TIGR01241 FtsH_fam ATP-depende 100.0 1.6E-29 3.5E-34 243.7 23.2 241 16-273 52-296 (495)
39 TIGR01242 26Sp45 26S proteasom 100.0 3.8E-29 8.2E-34 232.3 23.7 238 18-271 121-362 (364)
40 CHL00195 ycf46 Ycf46; Provisio 100.0 5.6E-28 1.2E-32 227.6 29.6 284 117-436 82-368 (489)
41 TIGR03689 pup_AAA proteasome A 100.0 1.2E-28 2.7E-33 231.3 23.0 220 17-245 180-411 (512)
42 TIGR03346 chaperone_ClpB ATP-d 100.0 1.6E-27 3.5E-32 242.4 31.6 168 16-212 170-354 (852)
43 CHL00176 ftsH cell division pr 100.0 1.4E-28 3.1E-33 238.9 21.9 240 16-272 180-423 (638)
44 PRK10865 protein disaggregatio 100.0 3.9E-27 8.4E-32 238.4 30.3 166 16-210 175-357 (857)
45 KOG0651 26S proteasome regulat 100.0 1.3E-28 2.7E-33 207.9 12.0 228 13-245 126-354 (388)
46 KOG0740 AAA+-type ATPase [Post 100.0 7E-28 1.5E-32 217.5 17.4 256 8-275 145-407 (428)
47 KOG0727 26S proteasome regulat 100.0 4.5E-28 9.8E-33 198.8 12.6 154 283-436 148-302 (408)
48 PLN00020 ribulose bisphosphate 100.0 2.9E-26 6.4E-31 201.5 23.1 208 16-228 112-331 (413)
49 PRK10733 hflB ATP-dependent me 99.9 3.6E-26 7.7E-31 225.2 24.3 240 15-271 148-391 (644)
50 KOG0738 AAA+-type ATPase [Post 99.9 1.7E-27 3.7E-32 207.0 12.1 153 283-438 205-361 (491)
51 KOG0734 AAA+-type ATPase conta 99.9 1.1E-26 2.4E-31 209.6 12.9 149 286-438 300-448 (752)
52 KOG0739 AAA+-type ATPase [Post 99.9 1.6E-26 3.5E-31 194.0 12.5 157 277-437 120-278 (439)
53 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.6E-25 3.4E-30 229.7 21.4 211 44-272 1621-1877(2281)
54 KOG0729 26S proteasome regulat 99.9 1.6E-25 3.5E-30 185.3 13.8 157 280-436 167-324 (435)
55 COG1223 Predicted ATPase (AAA+ 99.9 7E-26 1.5E-30 186.7 10.1 147 284-436 115-262 (368)
56 KOG0728 26S proteasome regulat 99.9 5.6E-25 1.2E-29 180.5 13.5 155 283-437 140-295 (404)
57 KOG0652 26S proteasome regulat 99.9 4.3E-25 9.3E-30 182.2 12.6 153 284-436 165-317 (424)
58 PTZ00454 26S protease regulato 99.9 1.6E-24 3.5E-29 200.2 14.9 154 283-436 138-292 (398)
59 KOG0726 26S proteasome regulat 99.9 1.3E-24 2.8E-29 182.1 11.8 154 284-437 179-333 (440)
60 KOG0731 AAA+-type ATPase conta 99.9 1.8E-24 4E-29 207.2 13.7 150 286-436 307-457 (774)
61 PRK03992 proteasome-activating 99.9 1.7E-23 3.7E-28 194.8 14.5 155 283-437 124-279 (389)
62 TIGR03689 pup_AAA proteasome A 99.9 1.2E-23 2.6E-28 197.8 13.4 152 283-436 175-340 (512)
63 TIGR02881 spore_V_K stage V sp 99.9 5.7E-22 1.2E-26 175.7 20.6 217 15-249 2-243 (261)
64 TIGR02880 cbbX_cfxQ probable R 99.9 4.8E-22 1E-26 177.0 19.8 219 15-250 17-259 (284)
65 PTZ00361 26 proteosome regulat 99.9 3.7E-23 8.1E-28 192.0 12.5 153 284-436 177-330 (438)
66 CHL00181 cbbX CbbX; Provisiona 99.9 8.6E-22 1.9E-26 175.0 20.1 218 16-250 19-260 (287)
67 COG0465 HflB ATP-dependent Zn 99.9 3.8E-23 8.3E-28 194.9 11.6 152 284-436 144-295 (596)
68 TIGR01241 FtsH_fam ATP-depende 99.9 8E-23 1.7E-27 197.3 14.1 153 283-436 48-200 (495)
69 PLN00020 ribulose bisphosphate 99.9 1.8E-22 3.8E-27 177.8 13.3 103 319-424 143-251 (413)
70 PF05496 RuvB_N: Holliday junc 99.9 1.1E-21 2.4E-26 161.7 15.0 192 15-239 20-224 (233)
71 KOG0737 AAA+-type ATPase [Post 99.9 2.9E-22 6.4E-27 174.5 10.1 148 286-436 88-238 (386)
72 KOG0651 26S proteasome regulat 99.9 1.3E-21 2.8E-26 165.8 12.0 152 287-438 129-281 (388)
73 TIGR01242 26Sp45 26S proteasom 99.9 1.8E-21 3.9E-26 181.0 14.2 154 283-436 115-269 (364)
74 CHL00176 ftsH cell division pr 99.9 3.3E-21 7.3E-26 187.7 13.9 150 286-436 179-328 (638)
75 KOG0740 AAA+-type ATPase [Post 99.8 4.9E-21 1.1E-25 173.3 11.6 148 285-436 148-297 (428)
76 KOG0741 AAA+-type ATPase [Post 99.8 9.4E-21 2E-25 171.4 9.7 144 292-436 223-376 (744)
77 COG2256 MGS1 ATPase related to 99.8 2.4E-19 5.2E-24 158.2 17.8 174 15-229 20-206 (436)
78 KOG0732 AAA+-type ATPase conta 99.8 2.1E-20 4.6E-25 184.4 10.5 149 286-437 261-414 (1080)
79 COG2255 RuvB Holliday junction 99.8 1.1E-18 2.3E-23 146.8 18.5 194 15-241 22-228 (332)
80 KOG1051 Chaperone HSP104 and r 99.8 1.1E-17 2.4E-22 164.5 27.3 163 18-209 185-365 (898)
81 KOG0742 AAA+-type ATPase [Post 99.8 1.1E-18 2.3E-23 153.5 17.6 214 14-243 350-591 (630)
82 PF00004 AAA: ATPase family as 99.8 8.6E-19 1.9E-23 139.4 15.2 131 56-193 1-132 (132)
83 KOG0743 AAA+-type ATPase [Post 99.8 2.9E-18 6.3E-23 154.1 17.1 204 16-235 198-411 (457)
84 PRK10733 hflB ATP-dependent me 99.8 5.1E-19 1.1E-23 174.8 13.4 149 287-436 149-297 (644)
85 PF00004 AAA: ATPase family as 99.8 1.9E-18 4E-23 137.5 12.9 108 327-437 1-111 (132)
86 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-18 2.5E-23 148.7 9.8 184 19-209 142-342 (423)
87 KOG0744 AAA+-type ATPase [Post 99.8 6.5E-19 1.4E-23 150.3 8.2 151 288-438 140-307 (423)
88 PRK14956 DNA polymerase III su 99.8 4.5E-17 9.8E-22 151.3 20.7 187 16-240 15-226 (484)
89 CHL00181 cbbX CbbX; Provisiona 99.8 6.4E-18 1.4E-22 150.3 11.9 136 290-435 23-168 (287)
90 TIGR00635 ruvB Holliday juncti 99.8 2.1E-16 4.5E-21 144.3 21.7 192 17-241 2-206 (305)
91 TIGR02880 cbbX_cfxQ probable R 99.7 1E-17 2.2E-22 149.3 11.9 126 291-425 23-158 (284)
92 PRK00080 ruvB Holliday junctio 99.7 2.7E-16 5.9E-21 144.3 20.9 195 16-243 22-229 (328)
93 PRK07003 DNA polymerase III su 99.7 2.1E-16 4.6E-21 152.3 20.7 188 16-241 13-225 (830)
94 TIGR02881 spore_V_K stage V sp 99.7 1.2E-17 2.7E-22 148.0 11.1 130 288-427 4-143 (261)
95 PRK12323 DNA polymerase III su 99.7 1.6E-16 3.5E-21 151.2 18.6 188 16-241 13-230 (700)
96 CHL00206 ycf2 Ycf2; Provisiona 99.7 1.4E-17 3E-22 172.2 12.0 113 315-437 1621-1781(2281)
97 PRK14962 DNA polymerase III su 99.7 4.8E-16 1E-20 147.2 21.2 187 15-239 10-221 (472)
98 PRK14960 DNA polymerase III su 99.7 4.6E-16 1E-20 148.5 20.4 188 16-241 12-224 (702)
99 TIGR00763 lon ATP-dependent pr 99.7 3E-16 6.5E-21 159.1 19.3 207 19-246 320-556 (775)
100 PRK14949 DNA polymerase III su 99.7 1.2E-15 2.7E-20 150.0 21.0 188 16-241 13-225 (944)
101 PRK14958 DNA polymerase III su 99.7 9.8E-16 2.1E-20 146.6 19.6 188 16-241 13-225 (509)
102 KOG0989 Replication factor C, 99.7 8.2E-16 1.8E-20 131.0 16.6 181 16-231 33-226 (346)
103 PRK14964 DNA polymerase III su 99.7 1.7E-15 3.6E-20 142.6 20.5 188 16-241 10-222 (491)
104 PRK07994 DNA polymerase III su 99.7 1.8E-15 3.8E-20 146.7 20.8 186 16-239 13-223 (647)
105 PRK14961 DNA polymerase III su 99.7 3E-15 6.5E-20 138.8 21.1 188 16-241 13-225 (363)
106 PRK06645 DNA polymerase III su 99.7 3.4E-15 7.5E-20 141.8 21.2 195 16-242 18-235 (507)
107 COG0466 Lon ATP-dependent Lon 99.7 2.4E-15 5.2E-20 142.2 19.0 169 19-208 323-509 (782)
108 PRK08691 DNA polymerase III su 99.7 4.5E-15 9.9E-20 143.2 19.5 189 16-242 13-226 (709)
109 PRK05342 clpX ATP-dependent pr 99.7 7.3E-15 1.6E-19 136.5 20.2 232 16-249 67-383 (412)
110 PLN03025 replication factor C 99.7 3.4E-15 7.4E-20 136.4 17.9 185 15-238 9-202 (319)
111 TIGR02902 spore_lonB ATP-depen 99.7 5E-15 1.1E-19 143.3 19.9 217 16-270 62-330 (531)
112 PF05673 DUF815: Protein of un 99.7 1.8E-14 3.9E-19 121.0 20.3 204 5-240 13-245 (249)
113 PRK07940 DNA polymerase III su 99.7 8.9E-15 1.9E-19 135.3 20.2 188 17-235 3-213 (394)
114 PRK13342 recombination factor 99.7 7.1E-15 1.5E-19 139.0 19.9 184 16-241 9-201 (413)
115 PRK14957 DNA polymerase III su 99.7 1.2E-14 2.7E-19 138.8 21.2 187 16-240 13-224 (546)
116 PRK14963 DNA polymerase III su 99.7 1.3E-14 2.9E-19 138.5 21.3 187 16-240 11-221 (504)
117 PRK14951 DNA polymerase III su 99.7 1.2E-14 2.5E-19 140.8 20.4 187 16-240 13-229 (618)
118 PRK14952 DNA polymerase III su 99.7 1.7E-14 3.7E-19 139.2 21.2 186 16-239 10-222 (584)
119 KOG2004 Mitochondrial ATP-depe 99.6 2.5E-15 5.4E-20 141.4 14.7 169 19-208 411-597 (906)
120 PRK05563 DNA polymerase III su 99.6 1.8E-14 3.9E-19 139.9 20.9 187 16-240 13-224 (559)
121 PRK14969 DNA polymerase III su 99.6 1.3E-14 2.9E-19 139.9 19.5 187 16-240 13-224 (527)
122 PRK07764 DNA polymerase III su 99.6 2.1E-14 4.5E-19 144.0 20.9 188 16-241 12-226 (824)
123 PRK04195 replication factor C 99.6 1.9E-14 4.1E-19 138.7 19.6 181 16-228 11-195 (482)
124 PRK05896 DNA polymerase III su 99.6 3.5E-14 7.6E-19 135.8 20.3 186 16-239 13-223 (605)
125 PRK07133 DNA polymerase III su 99.6 4.3E-14 9.4E-19 137.9 20.9 193 16-240 15-223 (725)
126 PRK14959 DNA polymerase III su 99.6 3.3E-14 7.1E-19 136.7 19.7 176 16-228 13-213 (624)
127 KOG2028 ATPase related to the 99.6 2.2E-14 4.8E-19 124.9 16.1 212 16-270 135-366 (554)
128 PRK14965 DNA polymerase III su 99.6 3.3E-14 7.2E-19 138.8 19.5 184 16-237 13-221 (576)
129 TIGR00382 clpX endopeptidase C 99.6 6.3E-14 1.4E-18 129.4 19.9 233 16-250 73-390 (413)
130 PRK14953 DNA polymerase III su 99.6 8.2E-14 1.8E-18 132.7 21.0 188 16-241 13-225 (486)
131 PRK06647 DNA polymerase III su 99.6 8E-14 1.7E-18 134.9 20.6 187 16-240 13-224 (563)
132 PRK10787 DNA-binding ATP-depen 99.6 4E-14 8.7E-19 142.1 18.7 229 19-270 322-580 (784)
133 PRK08451 DNA polymerase III su 99.6 1.5E-13 3.2E-18 130.8 21.4 189 16-242 11-224 (535)
134 PRK09111 DNA polymerase III su 99.6 1.3E-13 2.7E-18 134.0 21.0 193 16-240 21-237 (598)
135 TIGR02397 dnaX_nterm DNA polym 99.6 1.3E-13 2.8E-18 129.0 20.2 188 16-241 11-223 (355)
136 COG2812 DnaX DNA polymerase II 99.6 2.3E-14 4.9E-19 134.5 14.5 194 16-241 13-225 (515)
137 PRK14955 DNA polymerase III su 99.6 1.2E-13 2.6E-18 129.7 19.1 193 16-240 13-232 (397)
138 KOG0991 Replication factor C, 99.6 4.7E-14 1E-18 115.3 13.3 186 16-236 24-215 (333)
139 PRK14970 DNA polymerase III su 99.6 2.8E-13 6.1E-18 126.8 20.6 194 16-241 14-214 (367)
140 PRK05201 hslU ATP-dependent pr 99.6 1.8E-13 3.8E-18 124.4 18.3 187 16-204 11-345 (443)
141 PRK13341 recombination factor 99.6 1.4E-13 3E-18 136.5 19.1 184 16-241 25-222 (725)
142 KOG0743 AAA+-type ATPase [Post 99.6 1.3E-14 2.8E-19 130.9 10.8 148 281-437 193-347 (457)
143 PRK06305 DNA polymerase III su 99.6 3.1E-13 6.7E-18 128.1 20.8 186 16-239 14-225 (451)
144 PRK12402 replication factor C 99.6 2.7E-13 5.9E-18 126.0 20.1 188 16-236 12-226 (337)
145 PHA02544 44 clamp loader, smal 99.6 1.8E-13 3.9E-18 125.7 18.4 155 16-206 18-172 (316)
146 PRK05342 clpX ATP-dependent pr 99.6 2.2E-14 4.8E-19 133.3 12.3 147 291-437 72-239 (412)
147 KOG0742 AAA+-type ATPase [Post 99.6 1.1E-14 2.5E-19 128.4 8.9 141 288-437 353-494 (630)
148 TIGR00390 hslU ATP-dependent p 99.6 4.4E-13 9.6E-18 121.8 19.4 183 20-204 13-343 (441)
149 PRK14948 DNA polymerase III su 99.6 4.3E-13 9.3E-18 131.3 20.7 191 16-238 13-224 (620)
150 TIGR02928 orc1/cdc6 family rep 99.6 7.4E-13 1.6E-17 124.3 21.6 221 19-272 15-274 (365)
151 TIGR00382 clpX endopeptidase C 99.6 3.4E-14 7.3E-19 131.2 11.8 147 291-437 78-247 (413)
152 TIGR02903 spore_lon_C ATP-depe 99.5 6.4E-13 1.4E-17 130.7 21.2 228 16-271 151-429 (615)
153 PRK14954 DNA polymerase III su 99.5 7.1E-13 1.5E-17 129.0 21.2 188 16-235 13-227 (620)
154 PF00308 Bac_DnaA: Bacterial d 99.5 3E-13 6.4E-18 116.0 15.4 195 17-242 6-214 (219)
155 PRK14950 DNA polymerase III su 99.5 9.2E-13 2E-17 129.5 20.7 186 16-239 13-224 (585)
156 COG1224 TIP49 DNA helicase TIP 99.5 4.1E-12 8.9E-17 110.7 21.9 126 117-270 292-430 (450)
157 PRK00440 rfc replication facto 99.5 1.2E-12 2.5E-17 120.8 20.0 185 16-239 14-206 (319)
158 PRK11034 clpA ATP-dependent Cl 99.5 5.2E-13 1.1E-17 133.1 18.5 208 20-246 459-717 (758)
159 COG2256 MGS1 ATPase related to 99.5 5.7E-14 1.2E-18 124.5 10.3 113 286-436 20-139 (436)
160 PRK08084 DNA replication initi 99.5 2E-12 4.4E-17 112.4 19.6 184 16-240 19-213 (235)
161 PF05496 RuvB_N: Holliday junc 99.5 6.6E-14 1.4E-18 116.0 9.4 108 286-423 20-127 (233)
162 PRK14086 dnaA chromosomal repl 99.5 9.2E-13 2E-17 126.2 18.5 173 54-244 315-496 (617)
163 PF07724 AAA_2: AAA domain (Cd 99.5 6.5E-14 1.4E-18 114.6 9.1 111 323-438 2-130 (171)
164 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.3E-12 2.9E-17 113.9 17.4 186 17-244 13-209 (226)
165 PRK14971 DNA polymerase III su 99.5 2.6E-12 5.5E-17 126.0 21.1 186 16-239 14-225 (614)
166 PRK00411 cdc6 cell division co 99.5 7.3E-12 1.6E-16 118.9 23.7 224 19-272 30-282 (394)
167 PTZ00112 origin recognition co 99.5 2.6E-12 5.6E-17 125.3 20.5 180 19-223 755-966 (1164)
168 PRK00149 dnaA chromosomal repl 99.5 5.3E-13 1.1E-17 127.8 15.3 172 53-244 148-330 (450)
169 PRK09112 DNA polymerase III su 99.5 5.5E-12 1.2E-16 115.3 20.9 187 14-232 18-237 (351)
170 PRK06893 DNA replication initi 99.5 1.9E-12 4.2E-17 112.2 17.2 161 54-240 40-207 (229)
171 COG1474 CDC6 Cdc6-related prot 99.5 7E-12 1.5E-16 115.0 21.3 214 19-268 17-261 (366)
172 TIGR02640 gas_vesic_GvpN gas v 99.5 8E-13 1.7E-17 117.0 14.8 143 52-207 20-198 (262)
173 TIGR00362 DnaA chromosomal rep 99.5 7.6E-13 1.7E-17 125.3 15.3 173 53-245 136-319 (405)
174 TIGR02639 ClpA ATP-dependent C 99.5 2.5E-12 5.4E-17 130.1 19.7 205 19-246 454-713 (731)
175 COG2607 Predicted ATPase (AAA+ 99.5 9.6E-12 2.1E-16 102.6 19.3 201 9-241 50-278 (287)
176 PRK08903 DnaA regulatory inact 99.5 5.9E-12 1.3E-16 109.7 18.7 182 16-244 15-207 (227)
177 PRK07471 DNA polymerase III su 99.5 1.1E-11 2.3E-16 114.1 20.8 183 14-230 14-233 (365)
178 PRK08727 hypothetical protein; 99.5 1.2E-11 2.7E-16 107.4 20.1 159 53-240 41-208 (233)
179 cd00009 AAA The AAA+ (ATPases 99.4 3.7E-12 7.9E-17 103.4 15.0 145 22-192 1-150 (151)
180 KOG2004 Mitochondrial ATP-depe 99.4 8.8E-13 1.9E-17 124.6 12.6 116 290-423 411-535 (906)
181 TIGR01650 PD_CobS cobaltochela 99.4 3.8E-13 8.1E-18 119.4 9.5 145 52-208 63-234 (327)
182 COG0466 Lon ATP-dependent Lon 99.4 5.5E-13 1.2E-17 126.5 10.6 116 290-423 323-447 (782)
183 TIGR00763 lon ATP-dependent pr 99.4 4.3E-13 9.4E-18 136.3 10.8 115 291-423 321-444 (775)
184 KOG3595 Dyneins, heavy chain [ 99.4 7E-12 1.5E-16 134.1 20.3 329 53-391 127-531 (1395)
185 PRK14088 dnaA chromosomal repl 99.4 5.2E-12 1.1E-16 119.7 17.3 172 53-244 130-313 (440)
186 PRK12323 DNA polymerase III su 99.4 6.3E-13 1.4E-17 127.1 11.0 118 286-436 12-162 (700)
187 TIGR00390 hslU ATP-dependent p 99.4 4.9E-13 1.1E-17 121.5 9.6 89 291-379 13-104 (441)
188 PRK05201 hslU ATP-dependent pr 99.4 3.9E-13 8.5E-18 122.2 8.9 88 291-379 16-107 (443)
189 PRK14956 DNA polymerase III su 99.4 9.5E-13 2.1E-17 122.7 11.4 118 286-436 14-159 (484)
190 COG5245 DYN1 Dynein, heavy cha 99.4 9.6E-13 2.1E-17 132.4 11.9 333 45-392 1486-1903(3164)
191 PF06068 TIP49: TIP49 C-termin 99.4 1E-11 2.2E-16 110.2 17.0 79 117-215 279-369 (398)
192 PRK13407 bchI magnesium chelat 99.4 1.5E-12 3.3E-17 117.5 12.2 167 16-207 5-216 (334)
193 PRK05564 DNA polymerase III su 99.4 3.3E-11 7.2E-16 110.0 20.5 176 17-230 2-185 (313)
194 COG1219 ClpX ATP-dependent pro 99.4 1.6E-12 3.4E-17 111.6 10.7 100 324-423 97-202 (408)
195 PRK12422 chromosomal replicati 99.4 2.8E-12 6.1E-17 121.1 13.5 167 54-240 142-317 (445)
196 CHL00081 chlI Mg-protoporyphyr 99.4 3.6E-12 7.8E-17 115.2 12.9 165 16-206 14-231 (350)
197 PRK07003 DNA polymerase III su 99.4 1.5E-12 3.3E-17 126.1 10.9 120 286-437 12-159 (830)
198 PRK06620 hypothetical protein; 99.4 7.2E-11 1.6E-15 100.7 19.4 144 54-240 45-193 (214)
199 PRK07399 DNA polymerase III su 99.4 4.6E-11 1E-15 107.8 19.0 184 17-234 2-220 (314)
200 PRK05642 DNA replication initi 99.4 1.6E-11 3.4E-16 106.7 14.9 160 53-241 45-213 (234)
201 PRK14958 DNA polymerase III su 99.4 2.6E-12 5.6E-17 123.3 10.7 118 286-436 12-157 (509)
202 PHA02244 ATPase-like protein 99.4 2.1E-11 4.6E-16 109.4 15.7 133 52-199 118-266 (383)
203 TIGR02030 BchI-ChlI magnesium 99.4 2.5E-11 5.4E-16 110.0 16.3 165 17-206 2-218 (337)
204 PRK14960 DNA polymerase III su 99.4 5E-12 1.1E-16 121.3 12.1 117 287-436 12-156 (702)
205 COG5271 MDN1 AAA ATPase contai 99.4 7E-11 1.5E-15 120.4 20.3 144 51-209 1541-1705(4600)
206 CHL00095 clpC Clp protease ATP 99.4 4.5E-12 9.7E-17 129.7 11.9 100 288-400 177-288 (821)
207 PF12775 AAA_7: P-loop contain 99.3 3.6E-12 7.8E-17 112.6 9.2 148 52-209 32-195 (272)
208 COG0542 clpA ATP-binding subun 99.3 1.7E-11 3.6E-16 119.9 14.3 164 19-208 491-706 (786)
209 PRK14964 DNA polymerase III su 99.3 7.1E-12 1.5E-16 118.3 11.4 117 286-434 9-153 (491)
210 PRK14949 DNA polymerase III su 99.3 8E-12 1.7E-16 123.6 11.8 120 287-433 13-155 (944)
211 KOG0989 Replication factor C, 99.3 6E-12 1.3E-16 107.7 9.4 124 284-434 30-166 (346)
212 COG1219 ClpX ATP-dependent pro 99.3 3.3E-12 7.1E-17 109.6 7.8 138 16-153 57-203 (408)
213 TIGR03345 VI_ClpV1 type VI sec 99.3 5.3E-11 1.2E-15 121.3 17.9 205 19-246 566-832 (852)
214 TIGR03346 chaperone_ClpB ATP-d 99.3 6.5E-11 1.4E-15 121.6 18.7 209 19-247 565-828 (852)
215 TIGR00678 holB DNA polymerase 99.3 8.7E-11 1.9E-15 99.0 16.3 131 52-206 13-167 (188)
216 PRK14087 dnaA chromosomal repl 99.3 2.4E-11 5.1E-16 115.3 14.0 174 53-244 141-327 (450)
217 COG0593 DnaA ATPase involved i 99.3 5.4E-11 1.2E-15 108.7 15.7 191 52-272 112-313 (408)
218 KOG1969 DNA replication checkp 99.3 5.6E-11 1.2E-15 113.0 16.2 206 16-239 268-510 (877)
219 COG2255 RuvB Holliday junction 99.3 3.7E-12 8E-17 107.8 7.4 96 286-397 22-117 (332)
220 PRK10865 protein disaggregatio 99.3 1.2E-10 2.5E-15 119.3 19.5 209 19-246 568-830 (857)
221 PF01078 Mg_chelatase: Magnesi 99.3 1E-12 2.2E-17 108.4 3.7 127 17-171 1-158 (206)
222 PRK07940 DNA polymerase III su 99.3 1.2E-11 2.5E-16 114.8 11.0 134 288-438 3-158 (394)
223 COG0714 MoxR-like ATPases [Gen 99.3 2.7E-11 5.9E-16 111.3 13.3 159 20-205 25-201 (329)
224 COG0488 Uup ATPase components 99.3 1.6E-10 3.4E-15 110.8 18.8 30 48-77 24-53 (530)
225 COG5271 MDN1 AAA ATPase contai 99.3 1.1E-11 2.3E-16 126.1 11.1 138 52-208 887-1048(4600)
226 PRK07994 DNA polymerase III su 99.3 1.3E-11 2.9E-16 120.1 11.5 117 287-436 13-157 (647)
227 PF07728 AAA_5: AAA domain (dy 99.3 6.1E-13 1.3E-17 106.4 2.0 119 55-185 1-139 (139)
228 PRK14962 DNA polymerase III su 99.3 1.4E-11 3E-16 117.1 11.0 117 287-436 11-155 (472)
229 PRK09087 hypothetical protein; 99.3 1.4E-10 3E-15 99.9 15.7 150 53-240 44-199 (226)
230 PRK14957 DNA polymerase III su 99.3 2.5E-11 5.5E-16 116.4 12.2 118 287-436 13-158 (546)
231 COG1220 HslU ATP-dependent pro 99.3 3.5E-11 7.5E-16 104.3 11.5 86 117-204 251-346 (444)
232 KOG0745 Putative ATP-dependent 99.3 2.6E-11 5.6E-16 108.4 11.0 100 324-423 226-331 (564)
233 KOG0927 Predicted transporter 99.3 3E-10 6.5E-15 104.7 17.7 30 319-348 411-440 (614)
234 COG0470 HolB ATPase involved i 99.3 1.5E-10 3.3E-15 107.0 16.3 154 19-204 1-178 (325)
235 PRK08058 DNA polymerase III su 99.3 1.7E-10 3.7E-15 105.5 16.2 152 18-205 4-180 (329)
236 PRK14961 DNA polymerase III su 99.3 2.2E-11 4.8E-16 113.1 10.6 119 287-437 13-159 (363)
237 PRK10787 DNA-binding ATP-depen 99.3 2.5E-11 5.5E-16 122.2 11.6 115 291-423 323-446 (784)
238 PRK05707 DNA polymerase III su 99.3 4.6E-10 1E-14 101.9 17.8 155 52-231 21-199 (328)
239 PRK14952 DNA polymerase III su 99.3 5.1E-11 1.1E-15 115.4 12.2 116 287-436 10-156 (584)
240 PRK06645 DNA polymerase III su 99.3 4E-11 8.7E-16 114.3 11.3 125 285-436 16-166 (507)
241 PRK07764 DNA polymerase III su 99.3 3.6E-11 7.9E-16 121.0 11.6 117 287-435 12-158 (824)
242 PRK14951 DNA polymerase III su 99.2 3.6E-11 7.8E-16 116.9 10.9 117 287-436 13-162 (618)
243 KOG2035 Replication factor C, 99.2 5E-10 1.1E-14 94.5 16.1 184 16-231 10-224 (351)
244 PRK08691 DNA polymerase III su 99.2 6E-11 1.3E-15 115.0 12.3 124 286-436 12-157 (709)
245 PRK14969 DNA polymerase III su 99.2 3.9E-11 8.5E-16 116.0 11.0 123 287-436 13-157 (527)
246 PF07724 AAA_2: AAA domain (Cd 99.2 8.6E-12 1.9E-16 102.1 5.4 120 52-173 2-131 (171)
247 PRK11331 5-methylcytosine-spec 99.2 2.4E-10 5.2E-15 105.6 15.3 152 17-197 173-362 (459)
248 PF13177 DNA_pol3_delta2: DNA 99.2 2.2E-10 4.8E-15 93.4 13.3 138 23-194 1-161 (162)
249 PLN03025 replication factor C 99.2 8.8E-11 1.9E-15 107.5 11.6 120 286-436 9-137 (319)
250 PRK13342 recombination factor 99.2 1E-10 2.2E-15 110.8 12.1 110 288-435 10-126 (413)
251 PRK05563 DNA polymerase III su 99.2 7.6E-11 1.7E-15 114.9 11.5 117 287-436 13-157 (559)
252 PRK13531 regulatory ATPase Rav 99.2 1E-10 2.3E-15 108.8 11.6 158 20-205 21-192 (498)
253 PRK14959 DNA polymerase III su 99.2 1E-10 2.2E-15 112.9 11.9 118 286-436 12-157 (624)
254 COG2812 DnaX DNA polymerase II 99.2 1.5E-11 3.3E-16 115.7 6.0 124 287-437 13-158 (515)
255 TIGR02442 Cob-chelat-sub cobal 99.2 3.4E-10 7.4E-15 112.4 14.9 162 17-205 2-212 (633)
256 PRK05896 DNA polymerase III su 99.2 1.2E-10 2.6E-15 111.8 11.3 117 287-436 13-157 (605)
257 KOG0745 Putative ATP-dependent 99.2 1.1E-09 2.4E-14 98.1 16.4 100 53-152 226-331 (564)
258 PRK14965 DNA polymerase III su 99.2 1.3E-10 2.7E-15 113.9 11.3 117 287-436 13-157 (576)
259 PRK14963 DNA polymerase III su 99.2 1.3E-10 2.8E-15 111.4 11.1 117 287-436 11-154 (504)
260 TIGR00368 Mg chelatase-related 99.2 4.2E-10 9.1E-15 107.5 14.3 153 16-198 189-395 (499)
261 PRK14955 DNA polymerase III su 99.2 1.6E-10 3.5E-15 108.6 11.3 123 287-436 13-166 (397)
262 TIGR00602 rad24 checkpoint pro 99.2 9.9E-10 2.2E-14 107.2 17.0 197 16-233 81-321 (637)
263 PRK04132 replication factor C 99.2 9.4E-10 2E-14 110.2 17.0 157 52-233 563-729 (846)
264 PRK04195 replication factor C 99.2 3.3E-10 7.2E-15 109.4 12.9 124 286-436 10-139 (482)
265 PRK14953 DNA polymerase III su 99.1 2.3E-10 5.1E-15 109.3 10.9 123 287-436 13-157 (486)
266 TIGR03015 pepcterm_ATPase puta 99.1 1.9E-08 4.1E-13 90.3 22.7 194 53-270 43-264 (269)
267 TIGR00635 ruvB Holliday juncti 99.1 2.8E-10 6.1E-15 104.0 10.9 93 288-396 2-94 (305)
268 PRK14948 DNA polymerase III su 99.1 2.8E-10 6E-15 111.8 11.5 124 286-436 12-159 (620)
269 PRK07133 DNA polymerase III su 99.1 2.7E-10 5.9E-15 111.7 11.3 124 286-436 14-156 (725)
270 PRK14954 DNA polymerase III su 99.1 4.9E-10 1.1E-14 109.4 12.5 122 287-435 13-165 (620)
271 PRK09111 DNA polymerase III su 99.1 3.6E-10 7.8E-15 110.2 11.5 123 286-434 20-169 (598)
272 PRK00080 ruvB Holliday junctio 99.1 3.1E-10 6.7E-15 104.4 10.3 94 287-396 22-115 (328)
273 PF07726 AAA_3: ATPase family 99.1 3.6E-11 7.9E-16 90.6 3.3 114 55-186 1-130 (131)
274 KOG1942 DNA helicase, TBP-inte 99.1 1.1E-08 2.4E-13 87.2 18.5 88 117-224 297-398 (456)
275 PRK06305 DNA polymerase III su 99.1 6.6E-10 1.4E-14 105.6 11.9 117 287-436 14-159 (451)
276 smart00763 AAA_PrkA PrkA AAA d 99.1 9.4E-09 2E-13 92.7 18.2 65 14-86 45-118 (361)
277 cd00009 AAA The AAA+ (ATPases 99.1 1.4E-09 3E-14 88.1 12.0 73 323-395 18-96 (151)
278 PRK14950 DNA polymerase III su 99.1 4.3E-10 9.4E-15 110.8 10.6 117 287-435 13-158 (585)
279 PRK06647 DNA polymerase III su 99.1 6.4E-10 1.4E-14 108.0 11.3 123 286-436 12-157 (563)
280 PRK06871 DNA polymerase III su 99.1 2.4E-08 5.2E-13 90.0 20.3 148 24-206 7-178 (325)
281 smart00382 AAA ATPases associa 99.1 9.5E-10 2.1E-14 88.5 10.4 74 324-397 2-92 (148)
282 TIGR02974 phageshock_pspF psp 99.1 2.1E-09 4.5E-14 98.2 13.0 194 21-243 1-232 (329)
283 PRK08769 DNA polymerase III su 99.1 2.4E-08 5.2E-13 89.8 19.5 174 24-233 9-206 (319)
284 KOG2028 ATPase related to the 99.1 3.7E-10 8.1E-15 99.0 7.5 65 326-397 164-236 (554)
285 COG1123 ATPase components of v 99.1 2.4E-09 5.1E-14 100.9 13.4 31 318-348 311-341 (539)
286 PRK08451 DNA polymerase III su 99.1 1.1E-09 2.3E-14 104.7 11.2 118 286-435 10-155 (535)
287 KOG2680 DNA helicase TIP49, TB 99.1 2.5E-08 5.5E-13 85.3 18.1 126 117-270 289-427 (454)
288 TIGR02397 dnaX_nterm DNA polym 99.1 7.9E-10 1.7E-14 103.5 10.3 119 286-436 10-156 (355)
289 PHA02544 44 clamp loader, smal 99.1 1.6E-09 3.5E-14 99.5 12.0 122 286-436 17-139 (316)
290 PRK12402 replication factor C 99.1 2.2E-09 4.8E-14 99.8 13.0 123 287-436 12-164 (337)
291 smart00350 MCM minichromosome 99.1 9E-10 2E-14 106.8 10.7 173 19-208 203-401 (509)
292 TIGR02655 circ_KaiC circadian 99.1 1.1E-08 2.3E-13 98.9 17.8 78 319-396 258-366 (484)
293 PRK11608 pspF phage shock prot 99.0 3.3E-09 7.1E-14 97.0 13.2 196 18-242 5-238 (326)
294 PRK10636 putative ABC transpor 99.0 1.1E-08 2.5E-13 102.2 18.0 30 48-77 22-51 (638)
295 PRK06964 DNA polymerase III su 99.0 1.2E-08 2.6E-13 92.6 16.5 137 51-206 19-203 (342)
296 COG1239 ChlI Mg-chelatase subu 99.0 8.5E-09 1.8E-13 93.2 15.0 168 16-208 14-233 (423)
297 PRK14970 DNA polymerase III su 99.0 2.3E-09 5E-14 100.5 11.8 123 286-435 13-145 (367)
298 smart00382 AAA ATPases associa 99.0 3.4E-09 7.4E-14 85.2 11.3 74 53-130 2-92 (148)
299 PRK15064 ABC transporter ATP-b 99.0 1.6E-08 3.4E-13 99.7 18.0 30 48-77 22-51 (530)
300 TIGR00764 lon_rel lon-related 99.0 1.2E-08 2.7E-13 100.3 16.8 51 15-80 14-64 (608)
301 PRK13341 recombination factor 99.0 2.9E-09 6.3E-14 106.2 12.3 111 287-435 25-143 (725)
302 PRK11147 ABC transporter ATPas 99.0 1.8E-08 3.8E-13 101.1 17.9 30 48-77 24-53 (635)
303 PRK06090 DNA polymerase III su 99.0 4.2E-08 9.1E-13 88.2 18.1 149 23-205 7-178 (319)
304 COG1221 PspF Transcriptional r 99.0 2.6E-09 5.5E-14 97.5 10.4 203 16-246 75-311 (403)
305 TIGR02640 gas_vesic_GvpN gas v 99.0 3.5E-09 7.5E-14 93.9 11.1 84 324-423 21-131 (262)
306 PF00158 Sigma54_activat: Sigm 99.0 2.2E-09 4.8E-14 87.7 8.9 124 21-171 1-143 (168)
307 KOG1514 Origin recognition com 99.0 5E-08 1.1E-12 93.1 19.1 206 20-248 397-632 (767)
308 PRK07993 DNA polymerase III su 99.0 5E-08 1.1E-12 88.9 18.3 156 52-233 23-202 (334)
309 COG0606 Predicted ATPase with 99.0 5.7E-10 1.2E-14 102.1 5.5 49 15-78 175-223 (490)
310 TIGR01817 nifA Nif-specific re 99.0 1E-08 2.2E-13 100.8 14.6 198 16-242 193-426 (534)
311 PRK08699 DNA polymerase III su 99.0 1.4E-08 3E-13 92.2 14.1 136 51-205 19-183 (325)
312 PRK15424 propionate catabolism 99.0 1.6E-08 3.5E-13 97.4 15.1 197 16-242 216-463 (538)
313 PRK05564 DNA polymerase III su 99.0 4.7E-09 1E-13 95.9 10.7 120 288-437 2-133 (313)
314 PF13177 DNA_pol3_delta2: DNA 99.0 5.3E-09 1.2E-13 85.3 9.9 118 294-440 1-145 (162)
315 KOG0990 Replication factor C, 99.0 4.5E-09 9.7E-14 90.9 9.5 164 16-214 38-210 (360)
316 PF05673 DUF815: Protein of un 98.9 1.1E-08 2.4E-13 86.5 11.7 124 286-440 23-153 (249)
317 COG1220 HslU ATP-dependent pro 98.9 3.2E-09 7E-14 92.3 8.6 69 291-359 16-85 (444)
318 PRK09862 putative ATP-dependen 98.9 3.8E-09 8.2E-14 100.5 9.3 153 16-198 188-392 (506)
319 PF12780 AAA_8: P-loop contain 98.9 9.3E-10 2E-14 96.5 4.9 85 308-394 15-100 (268)
320 PRK15429 formate hydrogenlyase 98.9 2.4E-08 5.1E-13 101.1 15.5 196 16-243 373-608 (686)
321 PRK05022 anaerobic nitric oxid 98.9 1.3E-08 2.8E-13 99.1 12.9 198 17-244 185-420 (509)
322 COG2204 AtoC Response regulato 98.9 6E-09 1.3E-13 97.0 9.9 197 17-243 139-373 (464)
323 KOG0991 Replication factor C, 98.9 2.5E-09 5.5E-14 88.0 6.5 93 288-396 25-126 (333)
324 PRK14971 DNA polymerase III su 98.9 8.5E-09 1.8E-13 101.5 11.5 117 287-436 14-159 (614)
325 KOG0066 eIF2-interacting prote 98.9 3.8E-08 8.3E-13 88.7 14.4 30 319-348 608-637 (807)
326 TIGR01650 PD_CobS cobaltochela 98.9 1.8E-09 3.9E-14 96.2 6.0 76 321-397 61-148 (327)
327 KOG1969 DNA replication checkp 98.9 4.3E-09 9.3E-14 100.4 8.3 85 322-422 324-412 (877)
328 PF03215 Rad17: Rad17 cell cyc 98.9 1.7E-07 3.6E-12 90.1 18.8 175 16-210 16-229 (519)
329 PRK09112 DNA polymerase III su 98.9 2E-08 4.2E-13 92.2 12.0 126 286-437 19-181 (351)
330 TIGR02329 propionate_PrpR prop 98.9 2.6E-08 5.7E-13 96.1 13.2 199 16-243 209-449 (526)
331 COG3829 RocR Transcriptional r 98.9 2.3E-08 5E-13 93.1 12.2 206 13-242 239-477 (560)
332 PRK11388 DNA-binding transcrip 98.9 5.4E-08 1.2E-12 98.0 15.7 196 17-242 323-552 (638)
333 COG0470 HolB ATPase involved i 98.9 1.8E-08 3.9E-13 93.2 11.4 95 325-436 24-147 (325)
334 PF05621 TniB: Bacterial TniB 98.9 9.5E-08 2.1E-12 83.6 14.8 207 22-248 37-273 (302)
335 PRK00440 rfc replication facto 98.9 2.5E-08 5.4E-13 92.0 12.0 119 287-434 14-139 (319)
336 TIGR02031 BchD-ChlD magnesium 98.9 1.8E-08 3.9E-13 99.1 11.5 140 54-207 17-174 (589)
337 PF07728 AAA_5: AAA domain (dy 98.9 4.4E-09 9.5E-14 84.0 6.0 82 326-423 1-91 (139)
338 PLN03073 ABC transporter F fam 98.9 4.6E-07 1E-11 91.3 21.6 31 318-348 529-559 (718)
339 PRK08116 hypothetical protein; 98.8 3.6E-08 7.7E-13 87.3 12.0 123 53-196 114-251 (268)
340 PRK13409 putative ATPase RIL; 98.8 1.5E-07 3.3E-12 92.9 17.6 29 320-348 361-389 (590)
341 PRK07471 DNA polymerase III su 98.8 1.9E-08 4.1E-13 92.7 10.5 125 286-436 15-180 (365)
342 PRK10820 DNA-binding transcrip 98.8 5.3E-08 1.2E-12 94.9 14.0 198 15-242 200-435 (520)
343 COG3604 FhlA Transcriptional r 98.8 4.6E-08 9.9E-13 90.0 12.3 205 16-244 220-456 (550)
344 KOG0062 ATPase component of AB 98.8 3.7E-08 8.1E-13 90.7 11.8 29 47-75 100-128 (582)
345 COG0714 MoxR-like ATPases [Gen 98.8 1E-08 2.2E-13 94.3 8.3 84 322-423 41-138 (329)
346 PRK00411 cdc6 cell division co 98.8 4.8E-08 1E-12 92.8 13.2 103 324-436 55-181 (394)
347 PRK09302 circadian clock prote 98.8 1.6E-07 3.5E-12 91.8 16.6 97 320-422 269-396 (509)
348 PRK05707 DNA polymerase III su 98.8 1.8E-08 3.8E-13 91.6 9.1 95 325-436 23-145 (328)
349 PHA02244 ATPase-like protein 98.8 2.5E-08 5.5E-13 89.9 9.6 71 324-397 119-194 (383)
350 TIGR00678 holB DNA polymerase 98.8 2E-08 4.4E-13 84.6 8.5 93 324-435 14-134 (188)
351 TIGR02903 spore_lon_C ATP-depe 98.8 2.3E-07 5E-12 91.9 16.9 62 286-360 150-221 (615)
352 PF13173 AAA_14: AAA domain 98.8 5.4E-08 1.2E-12 76.3 10.1 119 53-198 2-126 (128)
353 TIGR02928 orc1/cdc6 family rep 98.8 4.3E-08 9.4E-13 92.1 11.2 126 291-436 16-173 (365)
354 PF07726 AAA_3: ATPase family 98.8 1.3E-09 2.7E-14 82.3 0.5 77 326-423 1-88 (131)
355 PRK07952 DNA replication prote 98.8 3.4E-08 7.3E-13 85.5 8.7 99 325-437 100-204 (244)
356 PRK00149 dnaA chromosomal repl 98.8 1.9E-08 4.1E-13 96.6 7.7 71 325-397 149-225 (450)
357 PF12774 AAA_6: Hydrolytic ATP 98.8 3.6E-07 7.8E-12 78.6 14.7 135 53-204 32-177 (231)
358 PRK08181 transposase; Validate 98.8 1.3E-08 2.9E-13 89.4 6.0 87 52-152 105-195 (269)
359 PF13173 AAA_14: AAA domain 98.8 4.1E-08 9E-13 76.9 8.2 98 325-440 3-102 (128)
360 PF01078 Mg_chelatase: Magnesi 98.7 7.1E-09 1.5E-13 85.8 3.9 45 289-348 2-46 (206)
361 TIGR02902 spore_lonB ATP-depen 98.7 4.9E-08 1.1E-12 95.1 10.3 60 286-358 61-130 (531)
362 PTZ00111 DNA replication licen 98.7 8.8E-08 1.9E-12 95.8 12.1 176 19-207 450-657 (915)
363 PRK08058 DNA polymerase III su 98.7 4.8E-08 1E-12 89.5 9.6 122 289-436 4-149 (329)
364 PRK09183 transposase/IS protei 98.7 1.8E-08 4E-13 88.7 6.6 74 322-396 100-177 (259)
365 PRK12377 putative replication 98.7 6.2E-08 1.3E-12 84.1 9.6 70 53-128 101-175 (248)
366 PRK13549 xylose transporter AT 98.7 6.8E-08 1.5E-12 94.6 10.8 30 49-78 27-56 (506)
367 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.3E-08 7.1E-13 86.2 7.7 64 323-396 37-103 (226)
368 PRK11331 5-methylcytosine-spec 98.7 5.7E-08 1.2E-12 90.1 9.4 86 324-422 194-298 (459)
369 PRK07399 DNA polymerase III su 98.7 5.6E-08 1.2E-12 87.9 9.0 122 288-436 2-162 (314)
370 PRK06893 DNA replication initi 98.7 8.2E-08 1.8E-12 83.4 9.6 92 325-437 40-134 (229)
371 PRK08181 transposase; Validate 98.7 5.3E-08 1.1E-12 85.6 8.5 99 324-437 106-208 (269)
372 PF13401 AAA_22: AAA domain; P 98.7 1.1E-07 2.5E-12 75.0 9.7 98 324-436 4-125 (131)
373 PRK08116 hypothetical protein; 98.7 5.6E-08 1.2E-12 86.1 8.5 100 324-437 114-220 (268)
374 PRK14088 dnaA chromosomal repl 98.7 3.5E-08 7.7E-13 93.8 7.7 72 325-397 131-208 (440)
375 TIGR00362 DnaA chromosomal rep 98.7 3.4E-08 7.4E-13 93.7 7.6 71 325-397 137-213 (405)
376 KOG1051 Chaperone HSP104 and r 98.7 1.6E-07 3.6E-12 93.8 12.5 132 19-172 562-711 (898)
377 PRK13531 regulatory ATPase Rav 98.7 2.6E-08 5.5E-13 93.2 6.2 98 322-436 37-155 (498)
378 PRK06526 transposase; Provisio 98.7 1.8E-08 3.8E-13 88.2 4.7 71 52-128 97-171 (254)
379 KOG2227 Pre-initiation complex 98.7 9.6E-07 2.1E-11 80.7 15.8 193 19-236 150-368 (529)
380 PF14532 Sigma54_activ_2: Sigm 98.7 8.5E-08 1.8E-12 76.2 8.2 107 52-193 20-137 (138)
381 PRK06526 transposase; Provisio 98.7 8.3E-08 1.8E-12 84.0 8.8 99 324-437 98-200 (254)
382 PRK10938 putative molybdenum t 98.7 5.7E-08 1.2E-12 94.8 8.5 30 48-77 24-53 (490)
383 PRK10762 D-ribose transporter 98.7 2.4E-07 5.1E-12 90.7 12.3 29 49-77 26-54 (501)
384 PRK08903 DnaA regulatory inact 98.7 1.4E-07 3.1E-12 82.1 9.6 61 322-396 40-103 (227)
385 PRK06835 DNA replication prote 98.7 1.3E-07 2.7E-12 85.9 9.4 86 53-152 183-274 (329)
386 PRK15439 autoinducer 2 ABC tra 98.7 2.3E-07 5.1E-12 90.8 12.1 29 49-77 33-61 (510)
387 PRK09183 transposase/IS protei 98.7 5.1E-08 1.1E-12 85.9 6.7 73 51-128 100-176 (259)
388 PRK12377 putative replication 98.6 9.4E-08 2E-12 83.0 7.9 99 325-437 102-205 (248)
389 PRK12422 chromosomal replicati 98.6 7.7E-08 1.7E-12 91.3 7.7 71 325-396 142-215 (445)
390 TIGR03269 met_CoM_red_A2 methy 98.6 3.7E-07 8.1E-12 89.8 12.8 29 49-77 22-50 (520)
391 PF01637 Arch_ATPase: Archaeal 98.6 4.5E-07 9.8E-12 79.5 12.1 178 22-228 2-227 (234)
392 PRK13765 ATP-dependent proteas 98.6 1.3E-06 2.8E-11 86.0 16.1 51 14-79 26-76 (637)
393 COG4172 ABC-type uncharacteriz 98.6 3.7E-07 7.9E-12 81.9 11.0 71 319-398 308-379 (534)
394 PRK06921 hypothetical protein; 98.6 2.6E-07 5.7E-12 81.7 10.1 69 52-127 116-188 (266)
395 PRK09700 D-allose transporter 98.6 3.5E-07 7.6E-12 89.8 12.1 29 49-77 27-55 (510)
396 TIGR02915 PEP_resp_reg putativ 98.6 3.2E-07 6.9E-12 88.7 11.4 195 18-242 138-370 (445)
397 PRK06964 DNA polymerase III su 98.6 1.5E-07 3.2E-12 85.6 8.4 103 322-438 19-173 (342)
398 KOG0478 DNA replication licens 98.6 2E-07 4.3E-12 88.6 9.4 172 20-208 430-627 (804)
399 PRK07952 DNA replication prote 98.6 2.9E-07 6.3E-12 79.8 9.8 69 54-128 100-174 (244)
400 PRK13407 bchI magnesium chelat 98.6 6.4E-08 1.4E-12 87.7 5.9 49 287-348 5-53 (334)
401 PF00158 Sigma54_activat: Sigm 98.6 1.2E-07 2.6E-12 77.5 6.9 83 324-423 22-119 (168)
402 KOG1970 Checkpoint RAD17-RFC c 98.6 6.4E-06 1.4E-10 76.9 18.4 179 16-211 79-284 (634)
403 PRK10923 glnG nitrogen regulat 98.6 1.1E-06 2.4E-11 85.6 14.5 197 18-243 137-370 (469)
404 PRK05917 DNA polymerase III su 98.6 6.3E-07 1.4E-11 79.0 11.4 121 52-194 18-154 (290)
405 PRK06871 DNA polymerase III su 98.6 2.4E-07 5.3E-12 83.6 9.0 94 326-437 26-147 (325)
406 PRK06921 hypothetical protein; 98.6 2.7E-07 5.8E-12 81.6 9.1 68 324-394 117-188 (266)
407 PTZ00112 origin recognition co 98.6 5.5E-07 1.2E-11 89.1 11.8 100 326-437 783-911 (1164)
408 PRK10982 galactose/methyl gala 98.6 4.2E-07 9.1E-12 88.8 11.3 30 48-77 19-48 (491)
409 TIGR00602 rad24 checkpoint pro 98.6 3.8E-07 8.3E-12 89.4 10.6 103 286-397 80-209 (637)
410 CHL00081 chlI Mg-protoporyphyr 98.6 1.4E-07 3.1E-12 85.7 7.0 51 286-349 13-63 (350)
411 TIGR02633 xylG D-xylose ABC tr 98.6 5.3E-07 1.1E-11 88.3 11.6 31 48-78 22-52 (500)
412 PRK11819 putative ABC transpor 98.6 8.4E-07 1.8E-11 87.9 13.1 29 49-77 29-57 (556)
413 PRK05642 DNA replication initi 98.6 1.8E-07 3.9E-12 81.4 7.3 91 325-437 46-139 (234)
414 COG1484 DnaC DNA replication p 98.6 2E-07 4.2E-12 81.8 7.5 69 323-396 104-180 (254)
415 PRK08084 DNA replication initi 98.5 5E-07 1.1E-11 78.7 9.8 62 325-396 46-110 (235)
416 COG1126 GlnQ ABC-type polar am 98.5 1.5E-07 3.2E-12 77.3 5.9 28 49-76 24-51 (240)
417 PRK06851 hypothetical protein; 98.5 1.7E-06 3.6E-11 79.1 13.4 26 53-78 30-55 (367)
418 COG1484 DnaC DNA replication p 98.5 3.3E-07 7.1E-12 80.4 8.6 72 52-128 104-179 (254)
419 PRK07993 DNA polymerase III su 98.5 2.9E-07 6.3E-12 84.0 8.5 97 325-437 25-148 (334)
420 PRK11288 araG L-arabinose tran 98.5 5.2E-07 1.1E-11 88.3 10.8 30 48-77 25-54 (501)
421 PRK14086 dnaA chromosomal repl 98.5 2.2E-07 4.7E-12 89.8 7.8 71 326-397 316-391 (617)
422 PF01695 IstB_IS21: IstB-like 98.5 3.8E-08 8.2E-13 81.4 2.2 71 51-127 45-119 (178)
423 PF13401 AAA_22: AAA domain; P 98.5 3.1E-07 6.6E-12 72.5 7.1 37 52-88 3-47 (131)
424 PRK07132 DNA polymerase III su 98.5 4.4E-06 9.6E-11 74.8 15.1 129 53-205 18-160 (299)
425 PF01695 IstB_IS21: IstB-like 98.5 1.2E-07 2.6E-12 78.4 4.8 71 323-395 46-120 (178)
426 PF05729 NACHT: NACHT domain 98.5 2.4E-06 5.2E-11 70.4 12.7 143 55-208 2-164 (166)
427 PRK08939 primosomal protein Dn 98.5 4.1E-07 9E-12 81.9 8.3 101 324-437 156-260 (306)
428 PF00308 Bac_DnaA: Bacterial d 98.5 3.2E-07 6.9E-12 78.8 7.0 97 326-436 36-138 (219)
429 KOG0480 DNA replication licens 98.5 7.3E-07 1.6E-11 84.2 9.6 175 18-209 344-544 (764)
430 COG2607 Predicted ATPase (AAA+ 98.5 2.8E-06 6E-11 70.9 11.8 121 286-437 56-183 (287)
431 PRK06835 DNA replication prote 98.5 4.9E-07 1.1E-11 82.0 8.1 99 325-437 184-288 (329)
432 TIGR02030 BchI-ChlI magnesium 98.5 2.4E-07 5.2E-12 84.3 6.0 47 289-348 3-49 (337)
433 PRK06090 DNA polymerase III su 98.5 1.3E-06 2.8E-11 78.7 10.5 97 324-437 25-148 (319)
434 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2E-06 4.4E-11 85.2 12.8 29 49-77 27-55 (552)
435 COG2884 FtsE Predicted ATPase 98.5 4.4E-07 9.5E-12 72.9 6.5 30 48-77 23-52 (223)
436 PRK07276 DNA polymerase III su 98.5 7.5E-06 1.6E-10 72.6 14.9 142 24-204 7-172 (290)
437 PRK05818 DNA polymerase III su 98.5 7.1E-06 1.5E-10 70.8 14.1 120 51-194 5-147 (261)
438 PRK08769 DNA polymerase III su 98.4 1.4E-06 3E-11 78.6 10.3 98 326-437 28-153 (319)
439 PRK08699 DNA polymerase III su 98.4 8.8E-07 1.9E-11 80.6 8.9 99 324-436 21-152 (325)
440 PRK08727 hypothetical protein; 98.4 7.4E-07 1.6E-11 77.5 8.1 62 326-397 43-107 (233)
441 KOG2170 ATPase of the AAA+ sup 98.4 2.4E-06 5.3E-11 73.7 10.6 137 19-173 82-226 (344)
442 PRK14087 dnaA chromosomal repl 98.4 8.7E-07 1.9E-11 84.5 8.9 70 325-396 142-219 (450)
443 PF00493 MCM: MCM2/3/5 family 98.4 6.7E-08 1.5E-12 88.5 1.3 176 19-210 24-224 (331)
444 PRK04132 replication factor C 98.4 5.6E-07 1.2E-11 90.7 7.7 94 323-436 563-669 (846)
445 TIGR02442 Cob-chelat-sub cobal 98.4 4.9E-07 1.1E-11 90.2 7.1 47 289-348 3-49 (633)
446 TIGR00368 Mg chelatase-related 98.4 5.7E-07 1.2E-11 86.3 7.2 46 288-348 190-235 (499)
447 PLN03210 Resistant to P. syrin 98.4 1.4E-05 2.9E-10 86.1 18.4 180 16-229 181-389 (1153)
448 TIGR01818 ntrC nitrogen regula 98.4 1.9E-06 4.1E-11 83.8 10.9 174 52-243 156-366 (463)
449 KOG2543 Origin recognition com 98.4 7.7E-06 1.7E-10 73.0 13.3 164 19-206 6-192 (438)
450 COG4619 ABC-type uncharacteriz 98.4 3.4E-06 7.5E-11 66.3 9.8 32 47-78 23-54 (223)
451 cd01120 RecA-like_NTPases RecA 98.4 1.7E-06 3.7E-11 71.1 8.9 96 327-422 2-124 (165)
452 COG1119 ModF ABC-type molybden 98.4 1.7E-06 3.7E-11 72.7 8.5 31 47-77 51-81 (257)
453 PRK11361 acetoacetate metaboli 98.4 2E-06 4.3E-11 83.5 10.3 172 52-242 165-374 (457)
454 COG1117 PstB ABC-type phosphat 98.4 1.6E-06 3.4E-11 71.2 7.9 29 49-77 29-57 (253)
455 PRK08939 primosomal protein Dn 98.4 7E-07 1.5E-11 80.4 6.5 70 52-127 155-228 (306)
456 PF06068 TIP49: TIP49 C-termin 98.4 1.5E-06 3.2E-11 77.9 8.3 82 289-379 23-106 (398)
457 cd03216 ABC_Carb_Monos_I This 98.4 2.7E-06 5.9E-11 69.7 9.4 104 319-434 21-139 (163)
458 cd03283 ABC_MutS-like MutS-lik 98.4 2E-06 4.4E-11 72.7 8.7 94 320-422 21-135 (199)
459 COG1125 OpuBA ABC-type proline 98.4 2.7E-06 5.8E-11 71.8 9.1 31 48-78 22-52 (309)
460 COG1474 CDC6 Cdc6-related prot 98.4 6E-06 1.3E-10 76.2 12.4 102 323-436 41-164 (366)
461 COG1117 PstB ABC-type phosphat 98.4 4.6E-06 1E-10 68.5 10.1 54 373-439 157-210 (253)
462 KOG0058 Peptide exporter, ABC 98.4 2.3E-06 4.9E-11 82.8 9.6 32 318-349 488-519 (716)
463 PRK06620 hypothetical protein; 98.3 9.2E-07 2E-11 75.6 6.3 26 325-350 45-70 (214)
464 COG1618 Predicted nucleotide k 98.3 2.2E-05 4.7E-10 61.5 13.0 27 52-78 4-30 (179)
465 COG1120 FepC ABC-type cobalami 98.3 5.6E-07 1.2E-11 77.6 4.7 31 48-78 23-53 (258)
466 PF14532 Sigma54_activ_2: Sigm 98.3 1.2E-06 2.7E-11 69.5 6.3 83 324-434 21-107 (138)
467 TIGR02012 tigrfam_recA protein 98.3 4.2E-06 9.1E-11 75.2 10.2 117 320-436 51-189 (321)
468 PRK05917 DNA polymerase III su 98.3 2.3E-06 4.9E-11 75.6 8.0 98 326-437 21-135 (290)
469 PF00931 NB-ARC: NB-ARC domain 98.3 2.5E-05 5.4E-10 70.8 15.1 174 25-236 2-202 (287)
470 COG1224 TIP49 DNA helicase TIP 98.3 2.1E-06 4.5E-11 75.8 7.4 82 289-379 38-121 (450)
471 KOG2228 Origin recognition com 98.3 1.8E-05 4E-10 69.5 12.9 165 20-207 25-219 (408)
472 cd03222 ABC_RNaseL_inhibitor T 98.3 6.2E-06 1.3E-10 68.0 9.7 77 320-396 21-102 (177)
473 cd01120 RecA-like_NTPases RecA 98.3 4.7E-06 1E-10 68.5 9.1 32 56-87 2-36 (165)
474 PRK08533 flagellar accessory p 98.3 5.3E-06 1.1E-10 71.9 9.7 77 320-396 20-130 (230)
475 PHA00729 NTP-binding motif con 98.3 2.3E-06 5.1E-11 72.3 6.9 25 54-78 18-42 (226)
476 cd03281 ABC_MSH5_euk MutS5 hom 98.3 9.2E-06 2E-10 69.5 10.6 102 325-435 30-151 (213)
477 PRK15115 response regulator Gl 98.3 2.4E-05 5.3E-10 75.6 14.9 172 52-242 156-365 (444)
478 cd01121 Sms Sms (bacterial rad 98.3 5.1E-06 1.1E-10 76.9 9.6 103 320-422 78-197 (372)
479 smart00763 AAA_PrkA PrkA AAA d 98.3 2.2E-06 4.8E-11 77.6 6.9 82 291-379 52-144 (361)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.3 8.6E-06 1.9E-10 65.1 9.7 77 319-396 21-101 (144)
481 cd03216 ABC_Carb_Monos_I This 98.3 3.7E-06 8E-11 68.9 7.7 31 48-78 21-51 (163)
482 COG1221 PspF Transcriptional r 98.3 1.8E-06 3.8E-11 79.3 6.3 83 323-423 100-199 (403)
483 TIGR01618 phage_P_loop phage n 98.2 1.6E-06 3.5E-11 73.5 5.4 71 325-397 13-95 (220)
484 COG4608 AppF ABC-type oligopep 98.2 5.1E-06 1.1E-10 71.4 8.4 81 49-129 35-140 (268)
485 PF00910 RNA_helicase: RNA hel 98.2 2.5E-06 5.4E-11 64.3 5.8 79 327-423 1-79 (107)
486 PRK11823 DNA repair protein Ra 98.2 6E-06 1.3E-10 78.7 9.8 103 320-422 76-195 (446)
487 PF03215 Rad17: Rad17 cell cyc 98.2 7E-06 1.5E-10 79.1 10.2 129 288-434 17-173 (519)
488 KOG0990 Replication factor C, 98.2 2.5E-06 5.5E-11 74.2 6.4 115 287-431 38-165 (360)
489 PF03969 AFG1_ATPase: AFG1-lik 98.2 2.9E-06 6.3E-11 78.1 7.3 103 50-172 59-168 (362)
490 cd03280 ABC_MutS2 MutS2 homolo 98.2 1.4E-05 2.9E-10 68.0 10.8 103 321-435 24-148 (200)
491 COG1241 MCM2 Predicted ATPase 98.2 1.9E-06 4.2E-11 84.3 6.1 173 19-208 286-484 (682)
492 cd00983 recA RecA is a bacter 98.2 9.2E-06 2E-10 73.1 10.0 117 320-436 51-189 (325)
493 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 5E-06 1.1E-10 71.4 7.9 42 372-423 146-187 (254)
494 COG1116 TauB ABC-type nitrate/ 98.2 1.3E-05 2.9E-10 67.9 10.1 30 48-77 24-53 (248)
495 KOG2170 ATPase of the AAA+ sup 98.2 8.6E-06 1.9E-10 70.4 9.0 123 292-437 84-224 (344)
496 cd03243 ABC_MutS_homologs The 98.2 1.3E-05 2.9E-10 68.3 10.2 92 322-422 27-138 (202)
497 cd01128 rho_factor Transcripti 98.2 2E-05 4.4E-10 68.7 11.4 30 50-79 13-42 (249)
498 TIGR02974 phageshock_pspF psp 98.2 7.4E-06 1.6E-10 75.0 9.0 83 324-423 22-119 (329)
499 COG1120 FepC ABC-type cobalami 98.2 6.3E-06 1.4E-10 71.2 8.0 31 319-349 23-53 (258)
500 COG1245 Predicted ATPase, RNas 98.2 4.8E-05 1E-09 69.7 13.8 27 52-78 99-125 (591)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-77 Score=538.43 Aligned_cols=412 Identities=44% Similarity=0.697 Sum_probs=379.1
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.|+++.|+++....|.+.+.. +.+|+.+.++|+.|++++||+||||||||++|+++|++++.+++.+++.++.+...|+
T Consensus 188 ~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGE 266 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGE 266 (802)
T ss_pred chhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcc
Confidence 579999999999999999988 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
.+++++++|+++.... |||+||||||.+.|..+. +.+...+.+.+|+..|+...........++||++||+|+.+
T Consensus 267 SEkkiRelF~~A~~~a----PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 267 SEKKIRELFDQAKSNA----PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred cHHHHHHHHHHHhccC----CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999998765 999999999999998874 34567789999999999987765555579999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccccc-
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC- 254 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~- 254 (441)
||+++|.|||+..|.+..|+..+|.+|++.++..+.+..++++..++..|.||.+.|+..++.+|...+++|..+....
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p 422 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSP 422 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888877652110
Q ss_pred -----------------------------------------------------ccceeeeHhhHHhhhhhcccccccCcc
Q 013506 255 -----------------------------------------------------AGVLSVTMEDWRHARSVVGPSITRGVT 281 (441)
Q Consensus 255 -----------------------------------------------------~~~~~~~~e~~~~~~~~~~~~~~~~~~ 281 (441)
...+.+..+||..+...++|+..+...
T Consensus 423 ~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF 502 (802)
T KOG0733|consen 423 LTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGF 502 (802)
T ss_pred cccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccc
Confidence 012335667777888888888888888
Q ss_pred cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
...|..+|++++++++++.++..++.+|+++...+.++|+.++.++||+||||||||-+||++|.+.+.+|+.+++.+++
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELl 582 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELL 582 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
++|+|++|..+|.+|++|+...|||+||||+|.+.|+|+.++ .+.+.|++|+||++|||++.+..|+|+|+|
T Consensus 583 NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeec
Confidence 999999999999999999999999999999999999998765 345789999999999999998888888876
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-67 Score=486.00 Aligned_cols=394 Identities=53% Similarity=0.879 Sum_probs=367.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchH
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~ 98 (441)
.++.|+..+...+++.+..|+..+..+...++++++++|++||||||||.++++++++.+..++.+++.++...+.++.+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHH
Q 013506 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPA 178 (441)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~ 178 (441)
+.++..|.++.... .|.++||||+|.++|..........+...+++.+++.... ..++++++++|.+..++++
T Consensus 264 ~~LR~~f~~a~k~~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~----~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQ---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKP----DAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred HHHHHHHHHHhccC---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcC----cCcEEEEEecCCccccChh
Confidence 99999999887542 2999999999999998876655677899999999998763 3368999999999999999
Q ss_pred HhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccce
Q 013506 179 LRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVL 258 (441)
Q Consensus 179 l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~ 258 (441)
++| |||+..+.+..|+...|.+|++.+.+.+....+.++..++..++||.++|+..++.++...+.++
T Consensus 337 lRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------- 404 (693)
T KOG0730|consen 337 LRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR----------- 404 (693)
T ss_pred hhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----------
Confidence 999 99999999999999999999999999999887788999999999999999999999999888776
Q ss_pred eeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHH
Q 013506 259 SVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKT 338 (441)
Q Consensus 259 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT 338 (441)
+.+++..+.....|+..+....+.+...|++++|++++|+.+++.+.|+++|...+.++|+.|+.++||+||||||||
T Consensus 405 --~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT 482 (693)
T KOG0730|consen 405 --TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKT 482 (693)
T ss_pred --hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchH
Confidence 567888889999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 339 TLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 339 tla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++||++|..++++|+.+++.+++++|+|++|+.++++|++|+...|||+||||||++.++|++++ ++..+|++++||
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLL 559 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998533 278999999999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
++|||++....|+|+|+|
T Consensus 560 tEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAAT 577 (693)
T ss_pred HHcccccccCcEEEEecc
Confidence 999999998777776665
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.6e-57 Score=452.50 Aligned_cols=411 Identities=46% Similarity=0.777 Sum_probs=357.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
-++++|+|++++++.|.+++..|+.+++.+.++++.++++++|+||||||||++++++++.++.+++.+++.++...+.+
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG 254 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence 35588999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 174 (441)
.....+..+|+.+... .|++|||||+|.+.+..+. ......+.+.+|+..++..... ..+++|+++|.++.
T Consensus 255 ~~~~~l~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~----~~vivI~atn~~~~ 326 (733)
T TIGR01243 255 ESEERLREIFKEAEEN----APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR----GRVIVIGATNRPDA 326 (733)
T ss_pred HHHHHHHHHHHHHHhc----CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC----CCEEEEeecCChhh
Confidence 8888888888877643 4899999999999876542 2334567788888888775432 35899999999999
Q ss_pred cCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccc--
Q 013506 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (441)
Q Consensus 175 l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~-- 252 (441)
+++++.+++||+..+.++.|+.++|.+|++.+........+.++..++..+.||++.++..+++.+...+.++.....
T Consensus 327 ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~ 406 (733)
T TIGR01243 327 LDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKI 406 (733)
T ss_pred cCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999888888777777899999999999999999999999888877654311
Q ss_pred ---------ccccceeeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCC
Q 013506 253 ---------ECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP 323 (441)
Q Consensus 253 ---------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 323 (441)
.......++.+++..+.....|+.......+.+...|.+++|++.+++.+.+.+.+++.+...+.+++..+
T Consensus 407 ~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~ 486 (733)
T TIGR01243 407 NFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRP 486 (733)
T ss_pred ccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCC
Confidence 11123456778888888888777666656667788999999999999999999999999999999999999
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSS 403 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~ 403 (441)
+.++||+||||||||++|+++|..++.+++.++++++.++|+|++++.++.+|+.|+...||||||||+|++++.|+...
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~ 566 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF 566 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred CCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 404 STSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 404 ~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
..+..++++++||++||++.....|+|+|||
T Consensus 567 --~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 567 --DTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred --CccHHHHHHHHHHHHhhcccCCCCEEEEEeC
Confidence 3346789999999999998776666666554
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-57 Score=418.42 Aligned_cols=405 Identities=35% Similarity=0.564 Sum_probs=330.4
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
+.-...+.+.....+..++..+ .. ....++.....+||+|+||||||++++.+|.+++.+++.+++.++.....+.
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~-~~---~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~ 474 (953)
T KOG0736|consen 399 NSLSPPGLEAKVLELVAVLSPQ-KQ---PSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASH 474 (953)
T ss_pred ccCCCccchHHHHHHHHHhCcc-cC---cchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccch
Confidence 3445566666666555554321 11 2222333446799999999999999999999999999999999999888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID 176 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~ 176 (441)
.+.+....|..+... .|+|||+-++|.+.-+.++ ..+.+.+..+...+. ........++++++++++..+.++
T Consensus 475 ~etkl~~~f~~a~~~----~pavifl~~~dvl~id~dg--ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 475 TETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDG--GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred hHHHHHHHHHHHhhc----CceEEEEeccceeeecCCC--chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCC
Confidence 888888888877654 5999999999988744443 334455544444444 222333556799999999999999
Q ss_pred HHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc-----
Q 013506 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA----- 251 (441)
Q Consensus 177 ~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~----- 251 (441)
+.+++ .|...+.++.|+.++|.+|++.+........+.....++.++.||+.+++..++......+..+....
T Consensus 548 ~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~ 625 (953)
T KOG0736|consen 548 ADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGG 625 (953)
T ss_pred HHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccccc
Confidence 99999 77778999999999999999999999998888889999999999999999988776533332222211
Q ss_pred -------cccccceeeeHhhHHhhhhhcccccccCcc-cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCC
Q 013506 252 -------NECAGVLSVTMEDWRHARSVVGPSITRGVT-VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISP 323 (441)
Q Consensus 252 -------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 323 (441)
........++.+|+..+..+.+........ ..+|...|++++|++++|..+.+.+..|++|...+.. ++++
T Consensus 626 ~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrk 704 (953)
T KOG0736|consen 626 LQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRK 704 (953)
T ss_pred chhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccc
Confidence 112234668889999998877776555443 3578899999999999999999999999999988876 8888
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSS 403 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~ 403 (441)
+.++|||||||||||-+||++|.++..+|+.+++.+++.+|+|++|+++|++|++|+...||||||||+|+++|+||.++
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sG 784 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSG 784 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcchhhHHHHHHHHHhcCCCC--CCeEEEEeee
Q 013506 404 STSITVGERLLSTLLTEMDGLEQ--AKVIIYPISF 436 (441)
Q Consensus 404 ~~~~~~~~~~~~~ll~~l~~~~~--~~~v~~~~~~ 436 (441)
+ ++++++|++++||.+|||..+ ...|+|+|+|
T Consensus 785 D-SGGVMDRVVSQLLAELDgls~~~s~~VFViGAT 818 (953)
T KOG0736|consen 785 D-SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGAT 818 (953)
T ss_pred C-ccccHHHHHHHHHHHhhcccCCCCCceEEEecC
Confidence 5 679999999999999999985 4557777765
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-52 Score=384.69 Aligned_cols=393 Identities=30% Similarity=0.457 Sum_probs=316.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEccCccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISPHSVHKAHV 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~----~~~~v~~~~~~~~~~ 94 (441)
.+++-....|+...+....| +..+.+++|.||+|||||.|++.+++++.. .+..++|+.+.....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45555555555555433222 334678999999999999999999998754 355678887766555
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHH---HH-HHHhcCCCCCCCCCeEEEEEEcC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQ---LF-TLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~---l~-~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
....+.+..+|..+.. ..|+|+++|++|.++...+..+.+....... ++ ..+..+.. ....+.+|++.+
T Consensus 477 e~iQk~l~~vfse~~~----~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~---~~~~ia~Iat~q 549 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALW----YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK---RNRKIAVIATGQ 549 (952)
T ss_pred HHHHHHHHHHHHHHHh----hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc---cCcEEEEEEech
Confidence 5555555566655554 4599999999999987443333322222222 22 22222211 122579999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~ 249 (441)
....+++.+.++.+|+.++.+++|...+|.+|+...+.+..... ..++..++..|.||.+.|+..+++++...+.....
T Consensus 550 e~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leri 629 (952)
T KOG0735|consen 550 ELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERI 629 (952)
T ss_pred hhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999877665432 23467799999999999999999999888773221
Q ss_pred cccccccceeeeHhhHHhhhhhcccccccCcccccCc-cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEE
Q 013506 250 DANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPK-VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGAL 328 (441)
Q Consensus 250 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 328 (441)
. .....++.+++...++.+.|...++.....+. ..|++++|+.++|+.+.+.++||.++...+...+++.+.++|
T Consensus 630 s----~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giL 705 (952)
T KOG0735|consen 630 S----NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGIL 705 (952)
T ss_pred c----cCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceE
Confidence 1 12226788999999998888877777765554 789999999999999999999999999999999999999999
Q ss_pred EECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcc
Q 013506 329 LHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSIT 408 (441)
Q Consensus 329 l~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~ 408 (441)
|+||||||||-+|.++|..++..++.++++++.++|+|.+|+++|.+|.+|+...||||||||+|+++|+||- ++.+
T Consensus 706 LyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh---DsTG 782 (952)
T KOG0735|consen 706 LYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH---DSTG 782 (952)
T ss_pred EECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC---CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 4567
Q ss_pred hhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 409 VGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 409 ~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
..+|++|+||++|||.++-..|+|+|+|
T Consensus 783 VTDRVVNQlLTelDG~Egl~GV~i~aaT 810 (952)
T KOG0735|consen 783 VTDRVVNQLLTELDGAEGLDGVYILAAT 810 (952)
T ss_pred chHHHHHHHHHhhccccccceEEEEEec
Confidence 7899999999999999998888888887
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=335.71 Aligned_cols=382 Identities=45% Similarity=0.691 Sum_probs=328.4
Q ss_pred hccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCC
Q 013506 38 PLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKP 117 (441)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (441)
|...+..++.+++.++.+++++||||+|||.+++.++.. +.....++.......+.+.........+..+.... |
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~----~ 77 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA----P 77 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC----C
Confidence 345667788889999999999999999999999999998 55557778888888888888888888888887654 6
Q ss_pred eEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCH
Q 013506 118 SVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTA 196 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~ 196 (441)
+++++||++.+.+.... .......+..++...++... ... +.+++.++.+..+++++.+++||...+.++.|+.
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~----~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK----RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhccccc----CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99999999999887765 33345577788888887766 333 7888899999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhccccc
Q 013506 197 EERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSI 276 (441)
Q Consensus 197 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 276 (441)
..+.+|+...........+.+...++..+.++.+.++..++..+......+.. .........+.+++...+....++
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~l~~~~~~- 229 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--DLVGEYIGVTEDDFEEALKKVLPS- 229 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--ccCcccccccHHHHHHHHHhcCcc-
Confidence 99999999888888777788899999999999999999999888877777752 111123456777788777777665
Q ss_pred ccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 277 TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
....+..+...|.+++|++.+++.+.+.+.+++.+...+...+++++.++||+||||||||++|+++|..++.+++.++
T Consensus 230 -~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~ 308 (494)
T COG0464 230 -RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK 308 (494)
T ss_pred -cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee
Confidence 5556677788999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred hhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+++.++|+|+++++++.+|..|+...||||||||+|++++.|+.+.+++ .+|++++||++||+.+....|+|+|+|
T Consensus 309 ~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~---~~r~~~~lL~~~d~~e~~~~v~vi~aT 385 (494)
T COG0464 309 GSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGS---GRRVVGQLLTELDGIEKAEGVLVIAAT 385 (494)
T ss_pred CHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchH---HHHHHHHHHHHhcCCCccCceEEEecC
Confidence 99999999999999999999999999999999999999999998754332 379999999999999998877766654
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-43 Score=299.53 Aligned_cols=241 Identities=40% Similarity=0.656 Sum_probs=216.0
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
+.++|.|++++++.|++.+..|+.+|+.|..+|+.||.+||||||||||||.+|+++|+..+..|+.+.++++...++|+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC-CCCchhhHHHHHHHHH---HHhcCCCCCCCCCeEEEEEEcCCC
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFT---LMDSNKPSKTSVPHVVVVASTNRV 172 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~-~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~vi~~~~~~ 172 (441)
..+.++++|.-+.... |+|+||||+|.+.... +.+.+.+.+++..++. .+|+.. ..+++-||++||++
T Consensus 229 GaRlVRelF~lAreka----PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD----~~~nvKVI~ATNR~ 300 (406)
T COG1222 229 GARLVRELFELAREKA----PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD----PRGNVKVIMATNRP 300 (406)
T ss_pred chHHHHHHHHHHhhcC----CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC----CCCCeEEEEecCCc
Confidence 9999999999988765 9999999999997655 3333445555555554 455544 34489999999999
Q ss_pred CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccc
Q 013506 173 DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN 252 (441)
Q Consensus 173 ~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~ 252 (441)
+.|||+++|+|||++.|+||.|+.+.|.+|++.+..++.+..+++++.++..+.|+++++++.+|.+|...+++...+
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~-- 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRD-- 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccceeeeHhhHHhhhhhcc
Q 013506 253 ECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 253 ~~~~~~~~~~e~~~~~~~~~~ 273 (441)
.++.+||..+..+..
T Consensus 379 ------~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 379 ------EVTMEDFLKAVEKVV 393 (406)
T ss_pred ------eecHHHHHHHHHHHH
Confidence 588889887776544
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=303.38 Aligned_cols=409 Identities=27% Similarity=0.419 Sum_probs=309.8
Q ss_pred cccccccc--ccchHHHHHHH-HHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEccCc
Q 013506 13 EKWKAEEA--IGGNRAAVEAL-RELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-HLTVISPHS 88 (441)
Q Consensus 13 ~~~~~~~~--i~G~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-~~~~v~~~~ 88 (441)
+.|+ |++ |.|+++....+ +++.......|+...++|++.-+++|||||||||||.+||.+...++. +.-.|++.+
T Consensus 214 Pdf~-Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 214 PDFN-FESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCC-hhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 4563 344 78998886655 456666677788999999999999999999999999999999999974 456789999
Q ss_pred cccccccchHHHHHHHHHHHHhhhh----cCCCeEEEEccccccccCCCCC---chhhHHHHHHHHHHHhcCCCCCCCCC
Q 013506 89 VHKAHVGESEKALREAFSQASSHAL----SGKPSVVFIDEIDALCPRRDHR---REQDVRIASQLFTLMDSNKPSKTSVP 161 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~il~iDe~~~l~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (441)
+.+.++|++++.++.+|..+..... ...--|+++||+|.++..++.. ......+..+|+.-+|.... ..
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq----LN 368 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ----LN 368 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh----hh
Confidence 9999999999999999988764322 2223599999999999776532 33456888999998887653 33
Q ss_pred eEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC----CCCcccHHHHHHHCCCCCHHHHHHHH
Q 013506 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP----LDANVDLEAIATSCNGYVGADLEALC 237 (441)
Q Consensus 162 ~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~----~~~~~~~~~l~~~~~g~~~~~i~~l~ 237 (441)
++++|+.||+.+.+|++++|+|||...+++..|++.-|.+|++.+.+++. ...++++.+++..+..|++++++.++
T Consensus 369 NILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglV 448 (744)
T KOG0741|consen 369 NILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLV 448 (744)
T ss_pred cEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHH
Confidence 79999999999999999999999999999999999999999987766553 56788899999999999999999999
Q ss_pred HHHHHHHHHhccccc-------ccccceeeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhccc
Q 013506 238 REATMSAVKRSSDAN-------ECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPI 310 (441)
Q Consensus 238 ~~a~~~~~~~~~~~~-------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~ 310 (441)
+.|...++.|..... .......++.+|+..++..++|........ ... + ...|+-..-..+...++...
T Consensus 449 ksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~-l~~--~-~~~Gmi~~g~~v~~il~~G~ 524 (744)
T KOG0741|consen 449 KSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEED-LER--F-VMNGMINWGPPVTRILDDGK 524 (744)
T ss_pred HHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHH-HHH--H-HhCCceeecccHHHHHhhHH
Confidence 999999998886543 112345677888888888777754322210 000 0 01222222223333333333
Q ss_pred CCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechh-hhhhhccCchH--HHHHHHHHHHHhcCCeEE
Q 013506 311 KHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA-ELYSMYVGESE--ALLRNTFQRARLAAPSII 387 (441)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~-~~~~~~~g~~~--~~~~~~~~~a~~~~~~vl 387 (441)
...+....-...+-..+||.||||||||+||.-+|.....|++.+-.+ ++++ ..++. .-++++|+.|.+++-+|+
T Consensus 525 llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG--~sEsaKc~~i~k~F~DAYkS~lsii 602 (744)
T KOG0741|consen 525 LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIG--LSESAKCAHIKKIFEDAYKSPLSII 602 (744)
T ss_pred HHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccC--ccHHHHHHHHHHHHHHhhcCcceEE
Confidence 333334444555667899999999999999999999999999976554 4545 33443 568999999999999999
Q ss_pred EEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCC-eEEEEeee
Q 013506 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK-VIIYPISF 436 (441)
Q Consensus 388 ~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~~~~~~ 436 (441)
++|+++.+.-.-. -...|+.-++-+|+-.|...+..+ +.+|+|||
T Consensus 603 vvDdiErLiD~vp----IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 603 VVDDIERLLDYVP----IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred EEcchhhhhcccc----cCchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 9999999873211 123456778888888888877765 57777776
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=313.67 Aligned_cols=255 Identities=40% Similarity=0.662 Sum_probs=234.5
Q ss_pred cccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc
Q 013506 6 RIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS 85 (441)
Q Consensus 6 ~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~ 85 (441)
.++..+|+.| ++|.|+|++|+.|++.+.+|..+++.|.++|+.++++||||||||||||++|+++|++.+.+|+.+.
T Consensus 424 ~~ve~p~v~W---~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk 500 (693)
T KOG0730|consen 424 ILVEMPNVSW---DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK 500 (693)
T ss_pred eeccCCCCCh---hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc
Confidence 3477889999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+.++.+.|.|+.++.++.+|+.++... |+|+|+||+|.+...++ ..+....+++.+|++.+++....+ +++
T Consensus 501 gpEL~sk~vGeSEr~ir~iF~kAR~~a----P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k----~V~ 572 (693)
T KOG0730|consen 501 GPELFSKYVGESERAIREVFRKARQVA----PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK----NVL 572 (693)
T ss_pred CHHHHHHhcCchHHHHHHHHHHHhhcC----CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC----cEE
Confidence 999999999999999999999998765 89999999999988774 333457799999999999876543 799
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
||++||+|+.+|+++.|+|||+..+++|+|+.+.|.+|++.++++++...+++++.++..|+||+++++..+|++|+..+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccccceeeeHhhHHhhhhhcccccc
Q 013506 245 VKRSSDANECAGVLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 277 (441)
+++..+ ...+..+|+..+++..+++..
T Consensus 653 ~~e~i~------a~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 653 LRESIE------ATEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred HHHhcc------cccccHHHHHHHHHhhcccCC
Confidence 988765 345788888888887776544
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-39 Score=292.87 Aligned_cols=260 Identities=40% Similarity=0.606 Sum_probs=229.7
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
..-|++.| ++|.|+++++.+|..++.+|+.++..++.+|+..+.+||||||||||||.+|+++|++.+.+|+.|.+.
T Consensus 503 ~tVPdVtW---~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP 579 (802)
T KOG0733|consen 503 ATVPDVTW---DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP 579 (802)
T ss_pred eecCCCCh---hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCH
Confidence 44578899 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
++...|+|+.++.++.+|+.++... |||+|+||+|.|++..+ .......+++++|+..+++..... ++.||
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~sa----PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~----gV~vi 651 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASA----PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR----GVYVI 651 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCC----CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc----ceEEE
Confidence 9999999999999999999998765 99999999999999875 445667799999999999876433 69999
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhc--cCCCCCcccHHHHHHHCC--CCCHHHHHHHHHHHHH
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK--KVPLDANVDLEAIATSCN--GYVGADLEALCREATM 242 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~--~~~~~~~~~~~~l~~~~~--g~~~~~i~~l~~~a~~ 242 (441)
++||+|+.+||+++|+|||+..++++.|+.++|..|++.+.+ +.++..+++++.++..+. ||++.|+..+++++..
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi 731 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASI 731 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 677888999999998776 9999999999999988
Q ss_pred HHHHhcccccc----ccc----ceeeeHhhHHhhhhhccccccc
Q 013506 243 SAVKRSSDANE----CAG----VLSVTMEDWRHARSVVGPSITR 278 (441)
Q Consensus 243 ~~~~~~~~~~~----~~~----~~~~~~e~~~~~~~~~~~~~~~ 278 (441)
.+++....... ... ...++..||+.++..++|+...
T Consensus 732 ~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~ 775 (802)
T KOG0733|consen 732 LALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSE 775 (802)
T ss_pred HHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccH
Confidence 87776543211 111 1235567899999988887553
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=267.23 Aligned_cols=261 Identities=37% Similarity=0.578 Sum_probs=228.4
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
+.+.++++| ++|.|+.++|+-|++++..|+..|+.|+.+- .|-++||++||||||||.||+++|.+++..|+.|+.
T Consensus 203 l~~np~ikW---~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 203 LQRNPNIKW---DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred hccCCCcCh---HhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 467788999 8999999999999999999999999998753 456899999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC--CchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 87 HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH--RREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+.+.+.+-|+.++.++-+|+-++..+ |+++||||||.|+...+. .++.+.++...|+.++++..........+.
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyA----PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~Vm 354 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYA----PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVM 354 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhC----CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEE
Confidence 99999999999999999999988776 999999999999987764 345678899999999998765544444589
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
|+++||.||+||++++| ||...|++|.|+.+.|..+++..+.......+.+++.++..++||++.+|.++|+.+...+
T Consensus 355 VLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~ 432 (491)
T KOG0738|consen 355 VLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMA 432 (491)
T ss_pred EEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccc---------ceeeeHhhHHhhhhhcccccc
Q 013506 245 VKRSSDANECAG---------VLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 245 ~~~~~~~~~~~~---------~~~~~~e~~~~~~~~~~~~~~ 277 (441)
++|........+ ...+..+|++.++....++..
T Consensus 433 mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 433 MRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 987654321111 134667788888777776544
No 12
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-36 Score=280.07 Aligned_cols=259 Identities=38% Similarity=0.616 Sum_probs=227.8
Q ss_pred cccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 10 EHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 10 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
-||+.| +||+|+|++|..|.+.+..|+.++++|.+ |+++..+||||||||||||-+|+++|.++...|+.|.+.++
T Consensus 666 IPnV~W---dDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 666 IPNVSW---DDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCccch---hcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 467889 89999999999999999999999999986 77778999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCch---hhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE---QDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
..+|+|+.++.++++|+.++... |||+|+||+|+++|.++..+. --.+++.+|+..+|..... ....++||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~----PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~--~s~~VFVi 815 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAA----PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS--SSQDVFVI 815 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccC----CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC--CCCceEEE
Confidence 99999999999999999998764 999999999999998754332 3458999999999987653 23369999
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCC-CHHHHHHHHHHHhccCCCCCcccHHHHHHHCC-CCCHHHHHHHHHHHHHHH
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVP-TAEERFEILKLYTKKVPLDANVDLEAIATSCN-GYVGADLEALCREATMSA 244 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p-~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~-g~~~~~i~~l~~~a~~~~ 244 (441)
++||+|+.+||++.|+|||+..+++.++ +.+.+..+++...+++.++.++++..+++.|. .|+++|+-.+|..|...+
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~A 895 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAA 895 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999998887 56677899999999999999999999999996 589999999999999999
Q ss_pred HHhccccc---------ccccceeeeHhhHHhhhhhccccccc
Q 013506 245 VKRSSDAN---------ECAGVLSVTMEDWRHARSVVGPSITR 278 (441)
Q Consensus 245 ~~~~~~~~---------~~~~~~~~~~e~~~~~~~~~~~~~~~ 278 (441)
+.|..+.. .......++.+|+..+.+++.|+.+.
T Consensus 896 ikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 896 IKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred HHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 88876432 22345678899999999988887553
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-36 Score=269.96 Aligned_cols=238 Identities=38% Similarity=0.593 Sum_probs=213.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..|+++-|.|++|++|++++.+ +..|+.|.++|-+-|++|||+||||||||.|||++|++.+.+|++.++++|...++|
T Consensus 301 v~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred cccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 3469999999999999999987 788999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCch-hhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE-QDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 174 (441)
...++++.+|..+++.+ |||+||||+|.+...+..... .....+++|+..+|..+... .++||++||.|+.
T Consensus 380 vGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe----GiIvigATNfpe~ 451 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE----GIIVIGATNFPEA 451 (752)
T ss_pred ccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC----ceEEEeccCChhh
Confidence 99999999999998776 999999999999877654433 55678889999999877544 6999999999999
Q ss_pred cCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccccc
Q 013506 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC 254 (441)
Q Consensus 175 l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~ 254 (441)
||+++.|+|||+..+.+|.||..-|.+|+..++.+.....+++...+++-+.||++.++.++++.|...+.....
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga----- 526 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA----- 526 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999887765433
Q ss_pred ccceeeeHhhHHhhhh
Q 013506 255 AGVLSVTMEDWRHARS 270 (441)
Q Consensus 255 ~~~~~~~~e~~~~~~~ 270 (441)
..++..+++++..
T Consensus 527 ---~~VtM~~LE~akD 539 (752)
T KOG0734|consen 527 ---EMVTMKHLEFAKD 539 (752)
T ss_pred ---ccccHHHHhhhhh
Confidence 2355555555544
No 14
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-36 Score=252.53 Aligned_cols=236 Identities=33% Similarity=0.561 Sum_probs=207.3
Q ss_pred ccccccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 3 SKGRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+.+.++.+||++| +++.|+|.+|++|++++..|+.+|++|.. +..|-+++||+|||||||+.||+++|.+.+..|+
T Consensus 120 ~sAIv~EKPNVkW---sDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFF 195 (439)
T KOG0739|consen 120 NSAIVREKPNVKW---SDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFF 195 (439)
T ss_pred hhhhhccCCCCch---hhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceE
Confidence 3567899999999 89999999999999999999999999876 3456689999999999999999999999999999
Q ss_pred EEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCC
Q 013506 83 VISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVP 161 (441)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (441)
.|+.+++.+.+.++.++.+..+|.-++.. +|+|+||||+|.++..+. ..++...+....++-++..... ...
T Consensus 196 SvSSSDLvSKWmGESEkLVknLFemARe~----kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~---d~~ 268 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGESEKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN---DND 268 (439)
T ss_pred EeehHHHHHHHhccHHHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc---CCC
Confidence 99999999999999999999999888755 599999999999987765 4445566667777777766432 344
Q ss_pred eEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 162 ~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
.++|+++||.||.||.+++| ||...|++|.|....|.++++.++...+.. ...+++.++..+.||++.+|..+++.+
T Consensus 269 gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDa 346 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDA 346 (439)
T ss_pred ceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhh
Confidence 79999999999999999999 999999999999999999999888876654 556799999999999999999999999
Q ss_pred HHHHHHhcccc
Q 013506 241 TMSAVKRSSDA 251 (441)
Q Consensus 241 ~~~~~~~~~~~ 251 (441)
.....+..++.
T Consensus 347 lmePvRkvqsA 357 (439)
T KOG0739|consen 347 LMEPVRKVQSA 357 (439)
T ss_pred hhhhHHHhhhh
Confidence 99888876653
No 15
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=4.1e-33 Score=279.46 Aligned_cols=370 Identities=22% Similarity=0.255 Sum_probs=245.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|+++..+.+.+.+.. ..+.+++|+||||||||++++.++..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 6778999999999988877754 245789999999999999999999987 56678888
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++.++.+..+++.+... .+.||||||+|.+.+.+..... ..+..+.|...+.+. .+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~-~~~~~~~L~~~l~~g--------~i 312 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGG-SMDASNLLKPALSSG--------KL 312 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCc-cHHHHHHHHHHHhCC--------Ce
Confidence 76665 456788888898888876532 3789999999999865432211 223444555555432 58
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC----CC-CcccHHHHHHHCCCCC----
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP----LD-ANVDLEAIATSCNGYV---- 229 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~----~~-~~~~~~~l~~~~~g~~---- 229 (441)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++.+|++.....+. .. .+..+..++..+..|.
T Consensus 313 ~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~ 389 (731)
T TIGR02639 313 RCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRF 389 (731)
T ss_pred EEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccccc
Confidence 8999988633 57899999 997 799999999999999997655432 11 2223555555554432
Q ss_pred -HHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhcccccccCcc-------cccCccccccccCchhHHHH
Q 013506 230 -GADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVT-------VEIPKVTWEDIGGLRDLKKK 301 (441)
Q Consensus 230 -~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~g~~~~k~~ 301 (441)
+...-.++++++.....+... .....++.+++................ ......--..+.|++.+.+.
T Consensus 390 ~P~kai~lld~a~a~~~~~~~~----~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~ 465 (731)
T TIGR02639 390 LPDKAIDVIDEAGASFRLRPKA----KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDS 465 (731)
T ss_pred CCHHHHHHHHHhhhhhhcCccc----ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHH
Confidence 222234445444322111100 012346677777666644321111100 01111123446677777777
Q ss_pred HHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh------------ccCchH
Q 013506 302 LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------------YVGESE 369 (441)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~------------~~g~~~ 369 (441)
+...+...... ..-...|.++++|+||+|||||++|+++|+.++.+++.++++++.+. |+|..+
T Consensus 466 l~~~i~~~~~g----~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~ 541 (731)
T TIGR02639 466 LVSSIKRSRAG----LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ 541 (731)
T ss_pred HHHHHHHHhcC----CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch
Confidence 66665421100 01122455678999999999999999999999999999999886432 333322
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC----------CCCCeEEEEeeeee
Q 013506 370 ALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL----------EQAKVIIYPISFIF 438 (441)
Q Consensus 370 ~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~v~~~~~~~~ 438 (441)
...+.+.++..+.+|+||||+|++.+ .+.+.||+.||+- ..+..+||++||+.
T Consensus 542 --~~~l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 542 --GGLLTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred --hhHHHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 23455566677889999999999974 5789999999863 22456788899874
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-34 Score=235.34 Aligned_cols=238 Identities=35% Similarity=0.624 Sum_probs=207.3
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccch
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~ 97 (441)
.++|.|++++++.|.+++..|..+.+.|.++|+.+|.++|+|||||||||.+|++.|.+.+..|+.+-+.++...++|+.
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdG 249 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDG 249 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC-CCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC
Q 013506 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID 176 (441)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~ 176 (441)
.+.++..|.-+...+ |+|+||||+|.+.... +.....+.+++..++.++....+- .+...+-+|++||+.+.++
T Consensus 250 AkLVRDAFaLAKEka----P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGF-ss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 250 AKLVRDAFALAKEKA----PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF-SSDDRVKVIAATNRVDILD 324 (424)
T ss_pred HHHHHHHHHHhhccC----CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCC-CCccceEEEeecccccccC
Confidence 999999998877654 9999999999886543 333334556666666555443321 2334799999999999999
Q ss_pred HHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccccccc
Q 013506 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAG 256 (441)
Q Consensus 177 ~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~ 256 (441)
|++.|+||+++.|+||.|+.+.|.+|++.+.+++....+++++.+++.+.+|++.+.+.+|-++...++++...
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~at------ 398 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGAT------ 398 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred ceeeeHhhHHhh
Q 013506 257 VLSVTMEDWRHA 268 (441)
Q Consensus 257 ~~~~~~e~~~~~ 268 (441)
.++.+|+-..
T Consensus 399 --ev~heDfmeg 408 (424)
T KOG0652|consen 399 --EVTHEDFMEG 408 (424)
T ss_pred --cccHHHHHHH
Confidence 4666666543
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.5e-34 Score=233.44 Aligned_cols=234 Identities=33% Similarity=0.556 Sum_probs=201.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
-.|++++|+|++|+.-.-++.+ +.+|+.|..| .|++|||+||||||||++|+++|++...+++.+.+.++...++|
T Consensus 118 it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 5679999999999986665554 7788999887 47899999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC--CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH--RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
+..+.+.++|..+...+ |||+||||+|.+.-+... ....-.+..+.|+..+++..... .++.|++||.++
T Consensus 194 dgar~Ihely~rA~~~a----PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene----GVvtIaaTN~p~ 265 (368)
T COG1223 194 DGARRIHELYERARKAA----PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE----GVVTIAATNRPE 265 (368)
T ss_pred hHHHHHHHHHHHHHhcC----CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC----ceEEEeecCChh
Confidence 99999999999998775 999999999988654432 12335578899999999876433 689999999999
Q ss_pred ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHhccccc
Q 013506 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEA-LCREATMSAVKRSSDAN 252 (441)
Q Consensus 174 ~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~-l~~~a~~~~~~~~~~~~ 252 (441)
.||+++++ ||...|+|..|+.++|.+|++.+.+.+++..+..++.++..+.|+++++|.. ++..+.+.++....+
T Consensus 266 ~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e-- 341 (368)
T COG1223 266 LLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDRE-- 341 (368)
T ss_pred hcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchh--
Confidence 99999999 9999999999999999999999999999999999999999999999999864 556666666665433
Q ss_pred ccccceeeeHhhHHhhhhh
Q 013506 253 ECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 253 ~~~~~~~~~~e~~~~~~~~ 271 (441)
.++.+|+..+++.
T Consensus 342 ------~v~~edie~al~k 354 (368)
T COG1223 342 ------KVEREDIEKALKK 354 (368)
T ss_pred ------hhhHHHHHHHHHh
Confidence 3667888877775
No 18
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-33 Score=228.93 Aligned_cols=239 Identities=35% Similarity=0.594 Sum_probs=208.8
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccch
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~ 97 (441)
..++.|++-+|+.+.+++..|+.+..+..+.|+.|++++|+|||||||||++++++|+.....|+.+.+++|...+.|+.
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC-CCCchhhHHHHH---HHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIAS---QLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~-~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
...++.+|.-+.... |.|+||||+|.+.... +.....+.+++. .|++.+++.... .++-+|++||+.+
T Consensus 234 prmvrdvfrlakena----psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~----~nvkvimatnrad 305 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENA----PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT----TNVKVIMATNRAD 305 (408)
T ss_pred cHHHHHHHHHHhccC----CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc----cceEEEEecCccc
Confidence 999999999887654 9999999999987543 333344444444 445555555443 2789999999999
Q ss_pred ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc
Q 013506 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253 (441)
Q Consensus 174 ~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~ 253 (441)
.+||+++|+||++..|+||.|+..++.-++.....++.+..+++++.+..+-...++.+|..+|+++...+.+...-
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nry--- 382 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRY--- 382 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcce---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988886543
Q ss_pred cccceeeeHhhHHhhhhhc
Q 013506 254 CAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 254 ~~~~~~~~~e~~~~~~~~~ 272 (441)
.+...|++.+.+..
T Consensus 383 -----vvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 383 -----VVLQKDFEKAYKTV 396 (408)
T ss_pred -----eeeHHHHHHHHHhh
Confidence 46667777766543
No 19
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-33 Score=230.20 Aligned_cols=247 Identities=34% Similarity=0.580 Sum_probs=212.0
Q ss_pred cccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc
Q 013506 12 NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (441)
Q Consensus 12 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~ 91 (441)
+++-...+-+.|++.+++.+.+.+..|..+|++|..+|+..|.++||+||||||||.++++++....+.|+.++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 34445557789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
.+.++....++++|--++..+ |+|+|+||+|++..... +++..+.+++..++.++....+- ....++-+|.+||
T Consensus 220 k~igegsrmvrelfvmareha----psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf-eatknikvimatn 294 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHA----PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKVIMATN 294 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcC----CceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-ccccceEEEEecc
Confidence 999999999999998887654 99999999999976553 22333445555555554433221 1223799999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
+.+.+||+++|+||.+..|+||+|+.+.|.+|++.+.+++.+....+++.++....|.++.+++.+|.++...+++.-.
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr- 373 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR- 373 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988877543
Q ss_pred ccccccceeeeHhhHHhhhhh
Q 013506 251 ANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.-++.+||+.+...
T Consensus 374 -------vhvtqedfemav~k 387 (404)
T KOG0728|consen 374 -------VHVTQEDFEMAVAK 387 (404)
T ss_pred -------ccccHHHHHHHHHH
Confidence 34778888866553
No 20
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=255.61 Aligned_cols=246 Identities=32% Similarity=0.558 Sum_probs=208.3
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
..|++.| ++|+|++.+|+.|.+.+..|+.+++.+.++|+.+++++||+||||||||++++++++.++.+++.+.+..
T Consensus 138 ~~p~v~~---~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 138 EKPDVTY---SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred CCCCCCH---HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 4455556 8999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-Cc---hhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RR---EQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+...+.++....+..+|..+... .|+||||||+|.+...... .. ....+.+..++..++.... ..++.
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~----~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~----~~~v~ 286 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ----TTNVK 286 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhc----CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC----CCCEE
Confidence 88888888888888888776543 5999999999998765421 11 1223455566666665332 22588
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
+|++||.++.+|+++.|++||+..++++.|+.++|..|++.++.+.....+.++..++..+.||++++|+.+|++|...+
T Consensus 287 VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A 366 (398)
T PTZ00454 287 VIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQA 366 (398)
T ss_pred EEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888889999999999999999999999999988
Q ss_pred HHhcccccccccceeeeHhhHHhhhhhcc
Q 013506 245 VKRSSDANECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 273 (441)
.++.. ..++.+|+..++....
T Consensus 367 ~r~~~--------~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 367 VRKNR--------YVILPKDFEKGYKTVV 387 (398)
T ss_pred HHcCC--------CccCHHHHHHHHHHHH
Confidence 87643 3578888888776543
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-33 Score=256.63 Aligned_cols=230 Identities=36% Similarity=0.606 Sum_probs=211.6
Q ss_pred ccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc
Q 013506 11 HNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (441)
Q Consensus 11 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~ 90 (441)
++..| +++.|+.++|+.|.+.+.+|..++..|.+.+++-+.+||||||||||||.+|.+++...+..++.|.+.++.
T Consensus 662 tgi~w---~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 662 TGIRW---EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELL 738 (952)
T ss_pred CCCCc---eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHH
Confidence 34677 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc-hhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-EQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~ 169 (441)
+.++|..++.++.+|..+... +|||||+||+|+++|.++..+ ....++.++++..+++..+ ...+.++++|
T Consensus 739 ~KyIGaSEq~vR~lF~rA~~a----~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg----l~GV~i~aaT 810 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQSA----KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG----LDGVYILAAT 810 (952)
T ss_pred HHHhcccHHHHHHHHHHhhcc----CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc----cceEEEEEec
Confidence 999999999999999988765 599999999999999887554 3467999999999998765 3368999999
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~ 249 (441)
.+|+.+||+++|+||++..++.+.|+..+|.+|++...+......+.+++.++..+.||+++|+..++..|...+..+..
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877766654
Q ss_pred cc
Q 013506 250 DA 251 (441)
Q Consensus 250 ~~ 251 (441)
..
T Consensus 891 ~~ 892 (952)
T KOG0735|consen 891 KR 892 (952)
T ss_pred Hh
Confidence 43
No 22
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-32 Score=268.36 Aligned_cols=369 Identities=19% Similarity=0.226 Sum_probs=238.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..++.++|.++..+.+.+++.. ..+.+++|+||||||||++++.++... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 5678899999999998887755 245788999999999999999999764 33444444
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++.+..+..++..... ..+.||||||+|.++..+..... ..+..+.|...+.+. .+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g-~~d~~nlLkp~L~~g--------~i 316 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGG-QVDAANLIKPLLSSG--------KI 316 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCc-HHHHHHHHHHHHhCC--------Ce
Confidence 44333 23456677777777776543 24789999999999876542211 223444444455432 58
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-----HHHHHHHCC-----CC
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-----LEAIATSCN-----GY 228 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-----~~~l~~~~~-----g~ 228 (441)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++.+|++.....+....++. +...+.... .+
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~ 393 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCcc
Confidence 9999998764 57999999 996 899999999999999998766555443333 233333232 23
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhcccccccCccc-------ccCccccccccCchhHHHH
Q 013506 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTV-------EIPKVTWEDIGGLRDLKKK 301 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~g~~~~k~~ 301 (441)
.+...-.++++++......... .....++.+++................. .....--..+.|++++.+.
T Consensus 394 lPdKaidlldea~a~~~~~~~~----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~ 469 (758)
T PRK11034 394 LPDKAIDVIDEAGARARLMPVS----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA 469 (758)
T ss_pred ChHHHHHHHHHHHHhhccCccc----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHH
Confidence 4445556677666433111000 0112355566665554333211111100 0111112346788888888
Q ss_pred HHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-----h-------ccCchH
Q 013506 302 LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-----M-------YVGESE 369 (441)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-----~-------~~g~~~ 369 (441)
+...+....... .....|.+++||+||||||||++|+++|..++.+++.++++++.. . |+|...
T Consensus 470 l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~ 545 (758)
T PRK11034 470 LTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ 545 (758)
T ss_pred HHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccc
Confidence 887775322111 112345678999999999999999999999999999999888643 1 233211
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC----------CCCCeEEEEeeee
Q 013506 370 ALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL----------EQAKVIIYPISFI 437 (441)
Q Consensus 370 ~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~v~~~~~~~ 437 (441)
-..+....+..+.+|+||||+|++.+ .+.+.||+.||+- .-++.+||++||+
T Consensus 546 --~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 546 --GGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred --cchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 12344444556778999999999974 5789999999842 1245688888885
No 23
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-32 Score=260.20 Aligned_cols=374 Identities=21% Similarity=0.250 Sum_probs=249.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..++-++|.++.++.+.+++++ ..+++-+|+|+||+|||+++..+|.+. +..++.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 6678999999999999999876 356778899999999999999999876 33456666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+-|+.++++..+.++.... .+.||||||+|.+...+...+. ..+..+.|...+.+. .+
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~----~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLARG--------eL 300 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKS----KNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALARG--------EL 300 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcC----CCeEEEEechhhhcCCCccccc-ccchhhhhHHHHhcC--------Ce
Confidence 65554 457788999999998887754 2789999999999887765443 345666677777664 36
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-----HHHHHHHCCC-----C
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-----LEAIATSCNG-----Y 228 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-----~~~l~~~~~g-----~ 228 (441)
.+|++|+..+ +-|+++.| ||. .+.+..|+.++...|++.....+..+..+. +...+..... +
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~ 377 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRF 377 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCC
Confidence 8888876543 45899999 997 899999999999999987666554433322 2222222211 1
Q ss_pred CHHHHHHHHHHHHHHHHHhcccc--------------------------cc---ccc---ce-------------eeeHh
Q 013506 229 VGADLEALCREATMSAVKRSSDA--------------------------NE---CAG---VL-------------SVTME 263 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~~~~~~--------------------------~~---~~~---~~-------------~~~~e 263 (441)
-+.-.-.++.+++.......... .+ ... .. .++.+
T Consensus 378 LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 457 (786)
T COG0542 378 LPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDED 457 (786)
T ss_pred CCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHH
Confidence 11111122333222211110000 00 000 00 01222
Q ss_pred hHHhhhhhccccc-ccCcc------cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCc
Q 013506 264 DWRHARSVVGPSI-TRGVT------VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCS 336 (441)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtG 336 (441)
++......+.... .+... ......--..+.|+++....+.+.+.. .......+.+|.+.+||.||+|+|
T Consensus 458 ~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrr----aRaGL~dp~rPigsFlF~GPTGVG 533 (786)
T COG0542 458 DIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRR----ARAGLGDPNRPIGSFLFLGPTGVG 533 (786)
T ss_pred HHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHH----HhcCCCCCCCCceEEEeeCCCccc
Confidence 3333222221110 00000 001111123466777666666665543 222223355677899999999999
Q ss_pred HHHHHHHHHHHcC---CceEEechhhhhhh------------ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCC
Q 013506 337 KTTLAKAAAHAAE---ASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (441)
Q Consensus 337 KTtla~~la~~~~---~~~~~i~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~ 401 (441)
||.+|++||..+. ..++++++|++..+ |+|..+ -..+.+.++..+++|++||||||.+|
T Consensus 534 KTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHp---- 607 (786)
T COG0542 534 KTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHP---- 607 (786)
T ss_pred HHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCH----
Confidence 9999999999997 78999999998766 777766 34678888889999999999999996
Q ss_pred CCCCCcchhhHHHHHHHHHhcC----------CCCCCeEEEEeeeee
Q 013506 402 SSSTSITVGERLLSTLLTEMDG----------LEQAKVIIYPISFIF 438 (441)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~~~~~~~~ 438 (441)
.++|.||+.||+ +..++.|||++||+-
T Consensus 608 ----------dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 608 ----------DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred ----------HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 789999999997 444567999999973
No 24
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-32 Score=261.05 Aligned_cols=238 Identities=38% Similarity=0.595 Sum_probs=210.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
-.|+|+.|++++|+.|.+++.. +.+|+.+.++|.+.|+++||+||||||||.||+++|.+.+.||+.+++++|.....+
T Consensus 308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 3569999999999999999987 889999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-----CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-----HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
....+++.+|..++..+ |+|+||||+|.+..... ...+.....+++|+..+|..... ..++++++||
T Consensus 387 ~~asrvr~lf~~ar~~a----P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----~~vi~~a~tn 458 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNA----PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----KGVIVLAATN 458 (774)
T ss_pred cchHHHHHHHHHhhccC----CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC----CcEEEEeccC
Confidence 98999999999988765 99999999999877662 23344556788888888887543 3699999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSS 249 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~ 249 (441)
+++.+|++++|+|||+..+.++.|+...|.+|++.++...... .+.++..++..+.||++.+|.+++.++...+.++..
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988875 666788899999999999999999999998887654
Q ss_pred cccccccceeeeHhhHHhhhh
Q 013506 250 DANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 250 ~~~~~~~~~~~~~e~~~~~~~ 270 (441)
. .+...++..+..
T Consensus 539 ~--------~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 539 R--------EIGTKDLEYAIE 551 (774)
T ss_pred C--------ccchhhHHHHHH
Confidence 3 355566665554
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.1e-31 Score=249.57 Aligned_cols=250 Identities=39% Similarity=0.628 Sum_probs=208.4
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
..++..| ++++|++++++.|.+.+..|+.+++.+..+|+.++.++||+||||||||++|++++..++.+++.+++..
T Consensus 124 ~~p~~~~---~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 124 ESPNVTY---EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred CCCCCCH---HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3445555 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc-hhhHHH---HHHHHHHHhcCCCCCCCCCeEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR-EQDVRI---ASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~-~~~~~~---~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+...+.++....++.+|..+... .|+||||||+|.+........ ..+... +..++..++... ...++.
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~----~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~----~~~~v~ 272 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD----PRGNVK 272 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhc----CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC----CCCCEE
Confidence 88888888888888888776543 489999999999976543221 112233 334444444322 223689
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
||++||.++.+++++.+++||+..++++.|+.++|.+|++.++.......+.++..++..+.|+++++++.++++|...+
T Consensus 273 VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a 352 (389)
T PRK03992 273 IIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFA 352 (389)
T ss_pred EEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888877788999999999999999999999999888
Q ss_pred HHhcccccccccceeeeHhhHHhhhhhcccccc
Q 013506 245 VKRSSDANECAGVLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 277 (441)
.+... ..++.+|+..++....+...
T Consensus 353 ~~~~~--------~~i~~~d~~~A~~~~~~~~~ 377 (389)
T PRK03992 353 IRDDR--------TEVTMEDFLKAIEKVMGKEE 377 (389)
T ss_pred HHcCC--------CCcCHHHHHHHHHHHhcccc
Confidence 77632 24788999988887766443
No 26
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-32 Score=235.03 Aligned_cols=228 Identities=36% Similarity=0.588 Sum_probs=198.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
-++.+|.|++.+++++++.+..|+.+++.|..-+ +.++.+|||+||||||||.+|+++|++.+.+++.|+...+.+.+.
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf 168 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF 168 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence 3458999999999999999999999999996433 568899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
++..+.+..+|..+... +|+++||||+|+++.... ..++.....-.++..++++..... ..+++|+++||+|.
T Consensus 169 gE~eKlv~AvFslAsKl----~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~--~~rVlVlgATNRP~ 242 (386)
T KOG0737|consen 169 GEAQKLVKAVFSLASKL----QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKD--SERVLVLGATNRPF 242 (386)
T ss_pred HHHHHHHHHHHhhhhhc----CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCC--CceEEEEeCCCCCc
Confidence 99999999999887754 599999999999886653 222333445566677777765433 23699999999999
Q ss_pred ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 174 ~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
.+|.++.| |+...++++.|+..+|.+|++.+++...+..++++..++..+.||++++|+.+|..|.....+.....
T Consensus 243 DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 243 DLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred cHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999998887766543
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.7e-31 Score=267.48 Aligned_cols=257 Identities=43% Similarity=0.700 Sum_probs=220.2
Q ss_pred cccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 10 EHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 10 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
.+++.| ++++|++.+|+.|.+.+.+|+.+++.+.++++.++.++||+||||||||++|+++|.+++.+++.+++.++
T Consensus 447 ~~~~~~---~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l 523 (733)
T TIGR01243 447 VPNVRW---SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 523 (733)
T ss_pred ccccch---hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 345556 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC--chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR--REQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
...+.++.++.++.+|..+... .|+||||||+|.+++..... .....+.+.+|+..++.... ..+++||+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~----~~~v~vI~ 595 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA----APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE----LSNVVVIA 595 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc----CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC----CCCEEEEE
Confidence 9999999999999999988755 48999999999998766432 22345778888888886543 23689999
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKR 247 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~ 247 (441)
+||.++.+|+++.|++||+..++++.|+.++|.+||+.+..+.....+.++..++..+.||+++++..+++++...+.++
T Consensus 596 aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~ 675 (733)
T TIGR01243 596 ATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675 (733)
T ss_pred eCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999888776
Q ss_pred cccccc----------cccceeeeHhhHHhhhhhcccccc
Q 013506 248 SSDANE----------CAGVLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 248 ~~~~~~----------~~~~~~~~~e~~~~~~~~~~~~~~ 277 (441)
...... ......++.+|+..++...+|+..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 432110 112235777888888877777643
No 28
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=229.69 Aligned_cols=247 Identities=32% Similarity=0.577 Sum_probs=212.9
Q ss_pred cccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc
Q 013506 12 NEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (441)
Q Consensus 12 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~ 91 (441)
+.+-.+..++.|+|++++.|.+.+..|+.+|+....+|+++|.+|+|||+||||||.||+++|+.....|+.+-++++..
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
.+.++..+.++++|+-+...+ |+|+||||||.+..... ..+....++++.++.++....+- .+...+-+|.+||
T Consensus 258 kylGdGpklvRqlF~vA~e~a----pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGF-dsrgDvKvimATn 332 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF-DSRGDVKVIMATN 332 (440)
T ss_pred HHhccchHHHHHHHHHHHhcC----CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCc-cccCCeEEEEecc
Confidence 999999999999999887665 99999999999876553 22333445555555555443321 1344789999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
..+.+||++.|+||.+..|.|+.|+...+.+||..+..++.+..+++++.+...-..+++.+|+.+|.+|...+++...
T Consensus 333 rie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR- 411 (440)
T KOG0726|consen 333 RIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR- 411 (440)
T ss_pred cccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887654
Q ss_pred ccccccceeeeHhhHHhhhhh
Q 013506 251 ANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~ 271 (441)
..++.+||..+...
T Consensus 412 -------m~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 412 -------MKVTMEDFKKAKEK 425 (440)
T ss_pred -------hhccHHHHHHHHHH
Confidence 34677888766553
No 29
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-32 Score=223.83 Aligned_cols=233 Identities=33% Similarity=0.584 Sum_probs=200.8
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
.+|.+.+ .++.|..++++.|.+.+..|+++|+.|-++|+.|+.++|+|||||||||.+|+++|++.+..|+.|-+++
T Consensus 170 ekpdvty---~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 170 EKPDVTY---SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred cCCCccc---ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 4445555 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC-CCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR-DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
+...++++....++++|+-++.. +-|++|+||+|.+.... +.+...+.+++..++.++.+..+ ....+++-++.
T Consensus 247 lvqkyvgegarmvrelf~martk----kaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg-fdprgnikvlm 321 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG-FDPRGNIKVLM 321 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC-CCCCCCeEEEe
Confidence 99999999999999999887754 47999999999886543 22222334555555554443322 11345899999
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKR 247 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~ 247 (441)
+||+|+.++|++.|+||++..++|..|+.+-|.+|++.+.+.+....+..++.++..|..-++.+++.+|.++...+++.
T Consensus 322 atnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred ecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred cc
Q 013506 248 SS 249 (441)
Q Consensus 248 ~~ 249 (441)
-.
T Consensus 402 rr 403 (435)
T KOG0729|consen 402 RR 403 (435)
T ss_pred Hh
Confidence 43
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.7e-31 Score=245.19 Aligned_cols=241 Identities=34% Similarity=0.582 Sum_probs=204.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
.++++|.|++++++.|.+++..|+.++..+.++++.++.++||+||||||||+++++++++++.+++.+.+..+...+.+
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~G 259 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLG 259 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcc
Confidence 34489999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-c---hhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-R---EQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
+....+..+|..+.. ..|+|+||||+|.+....... . ....+.+..++..++.... ..++.||++||.
T Consensus 260 e~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~----~~~V~VI~ATNr 331 (438)
T PTZ00361 260 DGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS----RGDVKVIMATNR 331 (438)
T ss_pred hHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc----cCCeEEEEecCC
Confidence 888888888877654 358999999999997654321 1 1123344555555554322 225899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+++++.|++||+..|+|+.|+.++|.+|++.++.......+.++..++..+.|+++++++.+|.+|...+.++..
T Consensus 332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r-- 409 (438)
T PTZ00361 332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR-- 409 (438)
T ss_pred hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999999888888888999999999999999999999999988887643
Q ss_pred cccccceeeeHhhHHhhhhhc
Q 013506 252 NECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~ 272 (441)
..++.+|+..+....
T Consensus 410 ------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 ------MKVTQADFRKAKEKV 424 (438)
T ss_pred ------CccCHHHHHHHHHHH
Confidence 347888888777654
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=6e-31 Score=247.61 Aligned_cols=238 Identities=29% Similarity=0.397 Sum_probs=199.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++|+|++.+|+.+.+.... +.....+.|+++++++||+||||||||++|+++|++++.+++.+++..+...+.+
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 3568999999999999875532 3445677899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC--CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD--HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
+.+..++.+|..+... .|+||||||+|.++.... ..+....+.+..++.+++... ..+++|+|||.++
T Consensus 302 ese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~------~~V~vIaTTN~~~ 371 (489)
T CHL00195 302 ESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK------SPVFVVATANNID 371 (489)
T ss_pred hHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC------CceEEEEecCChh
Confidence 9999999999876654 499999999999876432 223345567777777776422 2589999999999
Q ss_pred ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC--CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD--ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 174 ~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~--~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
.+|+++.|+|||+..++++.|+.++|.+|++.++.+.... .+.++..++..+.||++++|+.++.++...+....
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--- 448 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--- 448 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999999999999999999999999998886533 36779999999999999999999999988776542
Q ss_pred cccccceeeeHhhHHhhhhhcccc
Q 013506 252 NECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
..++.+|+..+.....|.
T Consensus 449 ------~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 449 ------REFTTDDILLALKQFIPL 466 (489)
T ss_pred ------CCcCHHHHHHHHHhcCCC
Confidence 347888888888877764
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.5e-32 Score=233.27 Aligned_cols=156 Identities=42% Similarity=0.685 Sum_probs=147.3
Q ss_pred ccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+.|..+|.+++|++...+.+++.++.|+.+...+..+|+.||.++|||||||||||.+||++|...++.|+.+.+|++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeE-EEEeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI-IYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~~~~~~ 436 (441)
..+|+|+...-++++|+-|+...|||+||||||++..+|-+++++.+...+|.+=+||++||||...+.| ||+|||
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 9999999999999999999999999999999999999999998888889999999999999999997765 455555
No 33
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.97 E-value=8.6e-30 Score=256.64 Aligned_cols=184 Identities=20% Similarity=0.301 Sum_probs=131.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----------~~~~~v~ 85 (441)
..++.++|+++..+.+.+++.. ....+++|+||||||||++++.++..+. ..++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 6788999999988887776644 3456899999999999999999998873 3355565
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++....+..+++..... +.+.||||||+|.+...+...+.. +..+.|...+.+. .+
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~--d~~n~Lkp~l~~G--------~l 317 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQG--DAANLLKPALARG--------EL 317 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccc--cHHHHhhHHhhCC--------Ce
Confidence 55544 346678888888888877542 357899999999998755432222 2333445555432 58
Q ss_pred EEEEEcCCC-----CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-----CcccHHHHHHHCCCC
Q 013506 164 VVVASTNRV-----DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-----ANVDLEAIATSCNGY 228 (441)
Q Consensus 164 ~vi~~~~~~-----~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-----~~~~~~~l~~~~~g~ 228 (441)
.+|++|+.. ...++++.| ||. .+.+++|+.+++.+|++.....+... .+..+..++..+.+|
T Consensus 318 ~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 318 RTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 899998864 358999999 996 89999999999999987665443321 222255555555544
No 34
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.1e-30 Score=251.01 Aligned_cols=250 Identities=41% Similarity=0.643 Sum_probs=221.6
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
..+++.| ++++|++.+|+.+.+.+.+|+..++.+...++.++.++||+||||||||++|++++.+++.+++.+...+
T Consensus 235 ~~~~v~~---~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~ 311 (494)
T COG0464 235 EDEDVTL---DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE 311 (494)
T ss_pred CCCCcce---ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH
Confidence 3455667 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhh-HHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQD-VRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
+.+.++++.++.++.+|..+... .|+|+||||+|.+++......... .++..+++..++...... ++++|+
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~----~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~----~v~vi~ 383 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKL----APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE----GVLVIA 383 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcC----CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC----ceEEEe
Confidence 99999999999999999999854 499999999999998876544433 589999999998765433 589999
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCC--CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL--DANVDLEAIATSCNGYVGADLEALCREATMSAV 245 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~ 245 (441)
+||.++.+|+++.|+|||+..+++++|+.++|.+|++.++..... ..+.+++.++..+.|+++.++..+++++...+.
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999985544 467789999999999999999999999999988
Q ss_pred HhcccccccccceeeeHhhHHhhhhhccccc
Q 013506 246 KRSSDANECAGVLSVTMEDWRHARSVVGPSI 276 (441)
Q Consensus 246 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 276 (441)
.... ...++.+|+..+.+...|+.
T Consensus 464 ~~~~-------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 464 REAR-------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHhc-------cCCccHHHHHHHHHhcCCCC
Confidence 8764 23578889988888766653
No 35
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.97 E-value=8.5e-30 Score=258.41 Aligned_cols=373 Identities=22% Similarity=0.256 Sum_probs=232.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..++.++|.++.++.+.+++.. ..+++++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4568899999999999998765 355789999999999999999999876 35678888
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++.++.+..+++.+... .+.||||||+|.+...+...+. ....+.|...+.+. .+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~g~--~~~a~lLkp~l~rg--------~l 308 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQEN----NNIILVIDEVHTLIGAGAAEGA--IDAANILKPALARG--------EL 308 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhc----CCeEEEEecHHHHhcCCCCCCc--ccHHHHhHHHHhCC--------Cc
Confidence 76654 456788888899888877532 4789999999999876543222 23344444555432 47
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc----CCCC-CcccHHHHHHHCCCCC----
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK----VPLD-ANVDLEAIATSCNGYV---- 229 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~----~~~~-~~~~~~~l~~~~~g~~---- 229 (441)
.+|++|+..+ ..++++.+ ||. .+.++.|+.++...|++..... .... .+..+..++..+.+|.
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~ 385 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRF 385 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Confidence 8888888754 46899998 996 6899999999998888754332 2222 2222455555554432
Q ss_pred -HHHHHHHHHHHHHHHHHhc-cccc------------------------------------------------------c
Q 013506 230 -GADLEALCREATMSAVKRS-SDAN------------------------------------------------------E 253 (441)
Q Consensus 230 -~~~i~~l~~~a~~~~~~~~-~~~~------------------------------------------------------~ 253 (441)
+...-.+++.++....... .... .
T Consensus 386 lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (821)
T CHL00095 386 LPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEK 465 (821)
T ss_pred CchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2222233333332211100 0000 0
Q ss_pred cccceeeeHhhHHhhhhhcccccccCccc-------ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCce
Q 013506 254 CAGVLSVTMEDWRHARSVVGPSITRGVTV-------EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRG 326 (441)
Q Consensus 254 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (441)
......++.+++................. .....--..+.|++.+.+.+...+....... .-+.+|.+.
T Consensus 466 ~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~ 541 (821)
T CHL00095 466 RLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGL----KNPNRPIAS 541 (821)
T ss_pred cccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcc----cCCCCCceE
Confidence 00001233333333322211110000000 0001112345677776666666554211110 112334557
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh------------ccCchHHHHHHHHHHHHhcCCeEEEEec
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM------------YVGESEALLRNTFQRARLAAPSIIFFDE 391 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~------------~~g~~~~~~~~~~~~a~~~~~~vl~iDE 391 (441)
++|+||+|||||++|+++|+.+ +.+++.++++++... |+|..+ ...+...++..+.+|++|||
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECC
Confidence 8999999999999999999987 357889988876321 343332 23456666777789999999
Q ss_pred ccccccccCCCCCCCcchhhHHHHHHHHHhcCC----------CCCCeEEEEeeeee
Q 013506 392 ADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL----------EQAKVIIYPISFIF 438 (441)
Q Consensus 392 ~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~v~~~~~~~~ 438 (441)
+|++.+ .+.+.||+.||.- ..+..+||++||+.
T Consensus 620 ieka~~--------------~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 620 IEKAHP--------------DIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred hhhCCH--------------HHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcc
Confidence 999974 6789999999962 23567899999874
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-30 Score=252.85 Aligned_cols=373 Identities=32% Similarity=0.468 Sum_probs=277.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~~ 90 (441)
-+|++++|++.++..|++.+..|+..++.|.++++.+++++|++||||||||..+++++..+.. .++.-.+.+..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 5569999999999999999999999999999999999999999999999999999999988743 23444667788
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~ 169 (441)
+.++++.++.++.+|.++... +|.|+|+||||.|+|... ...+....+...|+.++++... .+.+++|++|
T Consensus 342 skwvgEaERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds----RgqVvvigAT 413 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS----RGQVVVIGAT 413 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC----CCceEEEccc
Confidence 899999999999999998865 599999999999988763 3334455777888899888663 3469999999
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREATMSAVKRS 248 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~ 248 (441)
|+++.++|+++|+|||+..++|+.|+.+.|++|+..+..+..... ......++..+.||.+++++.+|.+|...++++.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 999999999999999999999999999999999998877766432 3347888999999999999999999999888766
Q ss_pred ccccc--------cccceeeeHhhHHhhhhhcccccccCc-ccccCccccccc-cCchhHHHHHHHHHh-----------
Q 013506 249 SDANE--------CAGVLSVTMEDWRHARSVVGPSITRGV-TVEIPKVTWEDI-GGLRDLKKKLQQAVE----------- 307 (441)
Q Consensus 249 ~~~~~--------~~~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~g~~~~k~~l~~~~~----------- 307 (441)
..... ......+...+|..+.....++..+.. .+..|...+..+ .+.......++..+.
T Consensus 494 ~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~ 573 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEH 573 (1080)
T ss_pred cCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHH
Confidence 43211 112233566777777776666555432 222222111111 101111111111110
Q ss_pred --cccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCceEEechhhhhhhc-cCchHHHHHHHHHHHHhcC
Q 013506 308 --WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFSLSGAELYSMY-VGESEALLRNTFQRARLAA 383 (441)
Q Consensus 308 --~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-~~~~~~i~~~~~~~~~-~g~~~~~~~~~~~~a~~~~ 383 (441)
+.+......-.+.+--...+++.|..|.|-+-+..++-+.+ +.++.....+.+..-- ..+.+..+..+|..|+...
T Consensus 574 ~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~ 653 (1080)
T KOG0732|consen 574 LKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTT 653 (1080)
T ss_pred hHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccC
Confidence 10000000000011112236788999999999999887766 6777778877776643 4556788999999999999
Q ss_pred CeEEEEecccccc
Q 013506 384 PSIIFFDEADVVG 396 (441)
Q Consensus 384 ~~vl~iDE~d~~~ 396 (441)
|||+||=.+|.-.
T Consensus 654 psi~~ip~~d~w~ 666 (1080)
T KOG0732|consen 654 PSIVFIPNVDEWA 666 (1080)
T ss_pred Cceeeccchhhhh
Confidence 9999999888654
No 37
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=243.93 Aligned_cols=238 Identities=40% Similarity=0.598 Sum_probs=211.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
-.|+|+.|.+++|+.+.+.+.. +..|+.+..+|...|++++|+||||||||.||++++.+.+.|++.+++++|...+++
T Consensus 147 v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 5679999999999999999876 788999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC----CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD----HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
....+++.+|.++...+ |||+||||+|.+...+. +++..-...+.+++..+|..... ..++++++||+
T Consensus 226 vGAsRVRdLF~qAkk~a----P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~----~gviviaaTNR 297 (596)
T COG0465 226 VGASRVRDLFEQAKKNA----PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN----EGVIVIAATNR 297 (596)
T ss_pred CCcHHHHHHHHHhhccC----CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC----CceEEEecCCC
Confidence 99999999999998765 99999999999877663 33344446788888888887632 26899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++-+|+++.|++||+..+.++.|+...|.+|++.+.+..+...++++..+++.+.|+++.++.+++.++...+.++...
T Consensus 298 pdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~- 376 (596)
T COG0465 298 PDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKK- 376 (596)
T ss_pred cccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCe-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988887653
Q ss_pred cccccceeeeHhhHHhhhh
Q 013506 252 NECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~ 270 (441)
.++..++..+..
T Consensus 377 -------~i~~~~i~ea~d 388 (596)
T COG0465 377 -------EITMRDIEEAID 388 (596)
T ss_pred -------eEeccchHHHHH
Confidence 355555555544
No 38
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.6e-29 Score=243.67 Aligned_cols=241 Identities=39% Similarity=0.574 Sum_probs=202.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|++++|+.+.+++.. +..++.+.+++..+++++||+||||||||+++++++++++.+++.+++.++...+.+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g 130 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 130 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhc
Confidence 3569999999999999998876 678888899999999999999999999999999999999999999999888888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
...+.++.+|..+... .|+||||||+|.+.+..... .......+.+++..++.... ..+++||++||.
T Consensus 131 ~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~----~~~v~vI~aTn~ 202 (495)
T TIGR01241 131 VGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT----NTGVIVIAATNR 202 (495)
T ss_pred ccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC----CCCeEEEEecCC
Confidence 8888888889887644 48999999999998655431 22334566777777776533 235899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+|+++.|++||+..++++.|+.++|.+|++.++.......+.++..++..+.|++++++..+++++...+.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~-- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK-- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999887776777899999999999999999999998776655432
Q ss_pred cccccceeeeHhhHHhhhhhcc
Q 013506 252 NECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~~ 273 (441)
..++.+++..+.....
T Consensus 281 ------~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 281 ------TEITMNDIEEAIDRVI 296 (495)
T ss_pred ------CCCCHHHHHHHHHHHh
Confidence 3578888888777543
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=3.8e-29 Score=232.29 Aligned_cols=238 Identities=42% Similarity=0.645 Sum_probs=195.4
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccch
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~ 97 (441)
+++++|++++++.|.+++..|+.++..+..+|+.++.+++|+||||||||++++++++.++.+++.+.+..+...+.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~ 200 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEG 200 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999988877777777777
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-chhhH---HHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDV---RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
...+..+|..+.. ..|+||||||+|.+....... ...+. ..+..++..++... ...++.+|+++|.++
T Consensus 201 ~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~----~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 201 ARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD----PRGNVKVIAATNRPD 272 (364)
T ss_pred HHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC----CCCCEEEEEecCChh
Confidence 7777777766543 348999999999987544221 11122 33334444444322 123689999999999
Q ss_pred ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc
Q 013506 174 AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE 253 (441)
Q Consensus 174 ~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~ 253 (441)
.+++++.+++||+..++++.|+.++|.+|++.+........+.++..++..+.|++++++..+++.|...+.++..
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~---- 348 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER---- 348 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC----
Confidence 9999999999999999999999999999999998888777777899999999999999999999999988877643
Q ss_pred cccceeeeHhhHHhhhhh
Q 013506 254 CAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 254 ~~~~~~~~~e~~~~~~~~ 271 (441)
..++.+|+..+...
T Consensus 349 ----~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 ----DYVTMDDFIKAVEK 362 (364)
T ss_pred ----CccCHHHHHHHHHH
Confidence 24777887776553
No 40
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=5.6e-28 Score=227.60 Aligned_cols=284 Identities=21% Similarity=0.279 Sum_probs=199.7
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCH
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTA 196 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~ 196 (441)
|.++++.|+|..+.. . ...+.|.++....+. .++.+|+.+. ...+++.+.+ +..++.+|.|+.
T Consensus 82 ~~~~vl~d~h~~~~~-----~---~~~r~l~~l~~~~~~----~~~~~i~~~~--~~~~p~el~~---~~~~~~~~lP~~ 144 (489)
T CHL00195 82 PALFLLKDFNRFLND-----I---SISRKLRNLSRILKT----QPKTIIIIAS--ELNIPKELKD---LITVLEFPLPTE 144 (489)
T ss_pred CcEEEEecchhhhcc-----h---HHHHHHHHHHHHHHh----CCCEEEEEcC--CCCCCHHHHh---ceeEEeecCcCH
Confidence 689999999988631 1 233333333322221 1134444433 3567888874 445789999999
Q ss_pred HHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhcccc
Q 013506 197 EERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 197 ~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
+++.+++.......... .+..++.++..+.|++..+++.+++.+..... .++.+++...++.....
T Consensus 145 ~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~-------------~~~~~~~~~i~~~k~q~ 211 (489)
T CHL00195 145 SEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATYK-------------TIDENSIPLILEEKKQI 211 (489)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-------------CCChhhHHHHHHHHHHH
Confidence 99999998876544433 33457899999999999999998876443210 12222222111111111
Q ss_pred c--ccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 276 I--TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 276 ~--~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
. .....+..+...+.+++|++.+|+.+.+.... ......+.|+.++.++||+||||||||++|+++|..++.+++
T Consensus 212 ~~~~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 212 ISQTEILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred HhhhccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 1 12223333456789999999999988765432 223345668888999999999999999999999999999999
Q ss_pred EechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEE
Q 013506 354 SLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYP 433 (441)
Q Consensus 354 ~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~ 433 (441)
.++.++++++|+|+++.+++++|+.|+...||||||||+|++++.++.. +.++...+++++||++|++. ...+++|.
T Consensus 289 ~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~~-~~~V~vIa 365 (489)
T CHL00195 289 RLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSEK-KSPVFVVA 365 (489)
T ss_pred EEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhcC-CCceEEEE
Confidence 9999999999999999999999999999999999999999999865432 23456789999999999853 23344444
Q ss_pred eee
Q 013506 434 ISF 436 (441)
Q Consensus 434 ~~~ 436 (441)
+||
T Consensus 366 TTN 368 (489)
T CHL00195 366 TAN 368 (489)
T ss_pred ecC
Confidence 444
No 41
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.2e-28 Score=231.31 Aligned_cols=220 Identities=30% Similarity=0.516 Sum_probs=181.2
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------EEEEcc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------LTVISP 86 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----------~~~v~~ 86 (441)
.+++|+|++++++.+.+.+..|+.++..+...++.+++++||+||||||||++++++++.++.+ ++.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 3489999999999999999999999999999999999999999999999999999999998644 445666
Q ss_pred CccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC--chhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 87 HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR--REQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
.++...+.++....++.+|+.+......+.|+|+||||+|.++...... +......+.+|+..++.... .++++
T Consensus 260 ~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~----~~~Vi 335 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES----LDNVI 335 (512)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc----CCceE
Confidence 6777788888888999999888776556679999999999998765432 23334566788888876543 23689
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
+|++||.++.+|+++.|+|||+..|+++.|+.+++.+|++.++...... ......+.|++..++..+++++....
T Consensus 336 VI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l-----~~~l~~~~g~~~a~~~al~~~av~~~ 410 (512)
T TIGR03689 336 VIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL-----DADLAEFDGDREATAAALIQRAVDHL 410 (512)
T ss_pred EEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc-----hHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987642111 12234468899999999999876544
Q ss_pred H
Q 013506 245 V 245 (441)
Q Consensus 245 ~ 245 (441)
.
T Consensus 411 ~ 411 (512)
T TIGR03689 411 Y 411 (512)
T ss_pred h
Confidence 3
No 42
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.6e-27 Score=242.42 Aligned_cols=168 Identities=20% Similarity=0.324 Sum_probs=123.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..++.++|.++..+.+.++++. ....+++|+||||||||++++.++..+ +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 5678899999998888887755 345789999999999999999999876 44567776
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++....+..++...... ..+.||||||+|.+.+.+...+. .+..+.|...+.+ +.+
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~~~--~d~~~~Lk~~l~~--------g~i 303 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAEGA--MDAGNMLKPALAR--------GEL 303 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCcch--hHHHHHhchhhhc--------Cce
Confidence 65543 345567777788888766432 34789999999999764432221 2333444333322 258
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCC
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL 212 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~ 212 (441)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++..|++.....+..
T Consensus 304 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~ 354 (852)
T TIGR03346 304 HCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEV 354 (852)
T ss_pred EEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhcc
Confidence 8999888763 57999999 997 6899999999999999877665543
No 43
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.4e-28 Score=238.86 Aligned_cols=240 Identities=37% Similarity=0.566 Sum_probs=198.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..|++++|++++|+.+.+.+.. +..++.+..++...+.++||+||||||||++|+++|++.+.+++.+++.++...+.+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 4669999999999999998766 667788888999999999999999999999999999999999999999888777777
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
.....++.+|..+.. ..|+||||||+|.+....+. ........+.+++..++.... ..++++|++||.
T Consensus 259 ~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~----~~~ViVIaaTN~ 330 (638)
T CHL00176 259 VGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG----NKGVIVIAATNR 330 (638)
T ss_pred hhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC----CCCeeEEEecCc
Confidence 666777888877654 35999999999999755421 222334556666666665432 236899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+|+++.|++||+..+.++.|+.++|.+|++.++.......+.++..++..+.||++++++.+++++...+.++..
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-- 408 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-- 408 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999887777777899999999999999999999998877655432
Q ss_pred cccccceeeeHhhHHhhhhhc
Q 013506 252 NECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~ 272 (441)
..++.+++..+....
T Consensus 409 ------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ------ATITMKEIDTAIDRV 423 (638)
T ss_pred ------CCcCHHHHHHHHHHH
Confidence 246777777766543
No 44
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.96 E-value=3.9e-27 Score=238.41 Aligned_cols=166 Identities=20% Similarity=0.326 Sum_probs=125.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..++.++|.++..+.+.++++. ....+++|+||||||||++++.++..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 6789999999998888887755 345789999999999999999999987 55677777
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.++..+.+..++...... ..+.||||||+|.+...+...+. .+..+.|...+.+ +.+
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~--~d~~~~lkp~l~~--------g~l 308 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGA--MDAGNMLKPALAR--------GEL 308 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccc--hhHHHHhcchhhc--------CCC
Confidence 66654 345677778888888765432 35789999999999865533222 2334444444433 257
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV 210 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~ 210 (441)
.+|++|+..+ ..|+++.| ||. .+.++.|+.+++..|++.....+
T Consensus 309 ~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 309 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred eEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 9999988865 57999999 997 68899999999999998766544
No 45
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-28 Score=207.92 Aligned_cols=228 Identities=36% Similarity=0.604 Sum_probs=197.8
Q ss_pred ccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc
Q 013506 13 EKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (441)
Q Consensus 13 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~ 92 (441)
+.--+++++.|+-.+..++.+.+..|+.++.+|.+.++++|..++||||||+|||.++++++..++.+++.+.+..+.+.
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
+.++..+.+++.|..+.... ||++|+||+|....... .....+.+++..|.+++++... .....++-+|+|+|.
T Consensus 206 yiGEsaRlIRemf~yA~~~~----pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdg-fd~l~rVk~ImatNr 280 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVI----PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDG-FDTLHRVKTIMATNR 280 (388)
T ss_pred hcccHHHHHHHHHHHHhhhC----ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhcc-chhcccccEEEecCC
Confidence 99999999999999888654 89999999998876553 2233455677777776664332 223447899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAV 245 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~ 245 (441)
++.|+|++.|+||++..+..|.|....|..|++.+..........+.+.+.+..+++++.++++.+.++...+.
T Consensus 281 pdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~ 354 (388)
T KOG0651|consen 281 PDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAI 354 (388)
T ss_pred ccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccccccccc
Confidence 99999999999999999999999999999999888877777777789999999999999999988887764443
No 46
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7e-28 Score=217.46 Aligned_cols=256 Identities=35% Similarity=0.559 Sum_probs=207.0
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...+++.| +++.|++.+|+.+.+++.+|...+..|..+. .+.+.+||.||||+|||+|++++|.+.+..++.++++
T Consensus 145 ~~~~~v~~---~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas 220 (428)
T KOG0740|consen 145 DTLRNVGW---DDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISAS 220 (428)
T ss_pred ccCCcccc---cCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHH
Confidence 44556778 8999999999999999999999998888653 3557999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
.+.+.+.|+.++.++.+|+-+... +|.|+||||+|.++.... ...+...+...+++-.++..... ..++++++
T Consensus 221 sLtsK~~Ge~eK~vralf~vAr~~----qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~--~~drvlvi 294 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSA--PDDRVLVI 294 (428)
T ss_pred HhhhhccChHHHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCC--CCCeEEEE
Confidence 999999999999999999888754 599999999999987663 33344545666666555543332 33489999
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCC-CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL-DANVDLEAIATSCNGYVGADLEALCREATMSAV 245 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~ 245 (441)
++||.|+.+|++++| ||...+++|.|+.+.|..+|...+...+. ..+.++..+++.++||++.++..+|.++.....
T Consensus 295 gaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~ 372 (428)
T KOG0740|consen 295 GATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPL 372 (428)
T ss_pred ecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCch
Confidence 999999999999999 99999999999999999999999888733 345679999999999999999999999987665
Q ss_pred Hhcccc--c---ccccceeeeHhhHHhhhhhcccc
Q 013506 246 KRSSDA--N---ECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 246 ~~~~~~--~---~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
+..... . .....+.+...++..++..+.+.
T Consensus 373 r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 373 RELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 554442 1 11233445555666665555554
No 47
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-28 Score=198.78 Aligned_cols=154 Identities=40% Similarity=0.673 Sum_probs=145.0
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
+.|..+|.+++|++-.|+.+++.++.++.|...+..+|+.|+.++|++||||||||+++++.|......|+++.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe-EEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV-IIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~~~~~~ 436 (441)
+|.|+...-++.+|.-|+...|+++||||+|.++.+|-+..++.+...+|++-+||+.|||+..... -+|+|||
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatn 302 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATN 302 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecC
Confidence 9999999999999999999999999999999999999888888888899999999999999998554 4666666
No 48
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.9e-26 Score=201.50 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=159.8
Q ss_pred cccccc-cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 16 KAEEAI-GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 16 ~~~~~i-~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
.+|+++ .|.--.+.-+.+.+.... .......+++++..++|+||||||||.+|+++|++++.+++.+++.++.+.+.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 455666 444444555544443311 12233467899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhh-hcCCCeEEEEccccccccCCCCCc-hh-hHHHHHHHHHHHhcCC-----C---CCCCCCeE
Q 013506 95 GESEKALREAFSQASSHA-LSGKPSVVFIDEIDALCPRRDHRR-EQ-DVRIASQLFTLMDSNK-----P---SKTSVPHV 163 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-~~~~~~il~iDe~~~l~~~~~~~~-~~-~~~~~~~l~~~~~~~~-----~---~~~~~~~~ 163 (441)
|+.++.++++|..+.... ..++||||||||+|.+++..+... .. ...+..+|++.+|+.. + ......++
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V 269 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRV 269 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCc
Confidence 999999999999887543 346799999999999998765322 22 2233468888887521 1 11234579
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGY 228 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~ 228 (441)
.||+|+|.++.|+++++|+|||+.. ++.|+.++|.+|++.+++...+. ..++..+++.+.|-
T Consensus 270 ~VIaTTNrpd~LDpALlRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq 331 (413)
T PLN00020 270 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQ 331 (413)
T ss_pred eEEEeCCCcccCCHhHcCCCCCCce--eCCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCC
Confidence 9999999999999999999999964 46899999999999999887665 45677888877663
No 49
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=3.6e-26 Score=225.23 Aligned_cols=240 Identities=36% Similarity=0.558 Sum_probs=199.1
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
...++++.|.+..++.+.+.+.. ...+..+..++...+.+++|+||||||||++++.++++++.+++.+++.++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45678999999999999998876 44556677777788889999999999999999999999999999999998888777
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
+.....++..|..+... .|+|+||||+|.+...... ........+.+++..++.... ...+++|++||
T Consensus 227 g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~----~~~vivIaaTN 298 (644)
T PRK10733 227 GVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVIAATN 298 (644)
T ss_pred cccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC----CCCeeEEEecC
Confidence 87778888888876543 5899999999999765432 222334566777777776543 23689999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
.++.+|+++.|++||+..+.++.|+.++|.+|++.++...+...+.++..++..+.||+++++.+++++|...+.+...
T Consensus 299 ~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~- 377 (644)
T PRK10733 299 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK- 377 (644)
T ss_pred ChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999998888888899999999999999999999999988776432
Q ss_pred ccccccceeeeHhhHHhhhhh
Q 013506 251 ANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~ 271 (441)
..++.+++..+...
T Consensus 378 -------~~i~~~d~~~a~~~ 391 (644)
T PRK10733 378 -------RVVSMVEFEKAKDK 391 (644)
T ss_pred -------CcccHHHHHHHHHH
Confidence 24566666655543
No 50
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=207.02 Aligned_cols=153 Identities=42% Similarity=0.653 Sum_probs=139.6
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+...|+++.|+.+.|+.|.+.+..|+...+.+.. .+.|=.++|++||||||||.|||++|.+++-.||.++.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 345678999999999999999999999988887775 4567789999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC----CCeEEEEeeeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ----AKVIIYPISFIF 438 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~v~~~~~~~~ 438 (441)
+|-|++|+-++-+|+-|+.-.|++|||||||++..+||++ +.++.++|+.++||..|||+.+ ..+|+|+|+|-|
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~ 361 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF 361 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEeccCC
Confidence 9999999999999999999999999999999999999875 5778899999999999999766 456899988865
No 51
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=209.55 Aligned_cols=149 Identities=43% Similarity=0.652 Sum_probs=136.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...++++.|+++.|+.+.+.++. ++....+.++|-..+.++||+||||||||.|||++|.+.+.+||...++++-.+|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 45789999999999999999885 77888889999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeee
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIF 438 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~ 438 (441)
|...+.+|.+|+.|++..||||||||+|++.++|... ..-+.+.-+|+||.+||||.+...|||+|+|-|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 9999999999999999999999999999999888652 223788999999999999999888888888765
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=194.04 Aligned_cols=157 Identities=38% Similarity=0.616 Sum_probs=136.6
Q ss_pred ccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 277 TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
......+.|...|.++.|++..|+.|.+.+..++...+.+.. .+.|-+++||+|||||||+-||+++|...+-.||.++
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 334455678889999999999999999999999998877764 5566789999999999999999999999999999999
Q ss_pred hhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC-CCeEEEEe-
Q 013506 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ-AKVIIYPI- 434 (441)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~~~~- 434 (441)
.+|+.++|.|++++.++++|+-|+...|+|+||||||++.++|+.. .++.++|+-.+||..|.|+-. ...|+|+|
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 9999999999999999999999999999999999999999888763 445689999999999999765 33455555
Q ss_pred eee
Q 013506 435 SFI 437 (441)
Q Consensus 435 ~~~ 437 (441)
|||
T Consensus 276 TNi 278 (439)
T KOG0739|consen 276 TNI 278 (439)
T ss_pred CCC
Confidence 444
No 53
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.6e-25 Score=229.67 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=164.0
Q ss_pred HHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccc----------cc------------------
Q 013506 44 QAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH----------VG------------------ 95 (441)
Q Consensus 44 ~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~----------~~------------------ 95 (441)
...++|..++++|||+||||||||.+|+++|++.+.|++.+++.++...+ .+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 45678899999999999999999999999999999999999998877432 01
Q ss_pred -------------ch--HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 013506 96 -------------ES--EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (441)
Q Consensus 96 -------------~~--~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (441)
.. ...++.+|+.|... .|||+||||||.+..... ....+.+|+..+++.... ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~----SPCIIFIDEIDaL~~~ds-----~~ltL~qLLneLDg~~~~-~s~ 1770 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAM----SPCIIWIPNIHDLNVNES-----NYLSLGLLVNSLSRDCER-CST 1770 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHC----CCeEEEEEchhhcCCCcc-----ceehHHHHHHHhcccccc-CCC
Confidence 11 12366677777765 499999999999976421 112367788888764321 123
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHh--ccCCCCC-cccHHHHHHHCCCCCHHHHHHHH
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYT--KKVPLDA-NVDLEAIATSCNGYVGADLEALC 237 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~--~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~ 237 (441)
.+++||||||.|+.+||++.|+|||+..|+++.|+..+|.+++.... +...... ..++..++..|.||+++|+.+++
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 46999999999999999999999999999999999999999887543 3333332 24689999999999999999999
Q ss_pred HHHHHHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 238 REATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
++|+..+..+... .++..++..+..+.
T Consensus 1851 NEAaliAirq~ks--------~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1851 NEALSISITQKKS--------IIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHcCCC--------ccCHHHHHHHHHHH
Confidence 9999998887543 46666777666544
No 54
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-25 Score=185.28 Aligned_cols=157 Identities=36% Similarity=0.607 Sum_probs=146.1
Q ss_pred cccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhh
Q 013506 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (441)
Q Consensus 280 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~ 359 (441)
...+.|..+|.+++|..+..+.+++.++.++.|..++.++|+.|+.++|++||||||||.+||+.|...+.-|+++-+|+
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 34466788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEE-EEeee
Q 013506 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVII-YPISF 436 (441)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~-~~~~~ 436 (441)
+..+|+|+...-++++|+-|+....|++||||||.+.+.|-+++.+.+...+|-.-+|++.|||+..++.+= ++|||
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatn 324 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN 324 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC
Confidence 999999999999999999999999999999999999999988888888888999999999999999988654 44554
No 55
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.93 E-value=7e-26 Score=186.70 Aligned_cols=147 Identities=30% Similarity=0.499 Sum_probs=123.0
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+...++++.|+++.|+..+-.++. +.... +++-+.+.++||+||||||||.+||++|.....+++.++.+++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe---~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPE---RFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChH---HhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 3456789999999999877654432 33333 4466778899999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC-CCeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ-AKVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~~~~~~ 436 (441)
|+|+..+.++++|++|+...|||+||||+|.++-.|+.+.-. +...+++|.||++|||+.. +++|.|.|||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR--GDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR--GDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc--ccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 999999999999999999999999999999999988775422 2256899999999999876 5556666666
No 56
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-25 Score=180.45 Aligned_cols=155 Identities=40% Similarity=0.656 Sum_probs=144.8
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..|..+|+.++|++...+.+.+.++.+.+|...+..+|+..+.++||+||||||||-+|++.|+...+.|++++++++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe-EEEEeeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV-IIYPISFI 437 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~~~~~~~ 437 (441)
+|+|+...-++++|--|+...|+++|+||||++.+.|..++.+.++..+|-.-+||+.||||+.... -+|+|||-
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 9999999999999999999999999999999999999988888888889999999999999998654 56667764
No 57
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.3e-25 Score=182.23 Aligned_cols=153 Identities=35% Similarity=0.629 Sum_probs=142.5
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.|...|.+++|++...+.+.+.+..++.|..++..+++.|+.++|+|||||||||.+||++|...+..|+.+.++.+..+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|+|+..+-++..|.-|....|+++||||+|.+..+|-++....+...+|-.-+||+.|||+.+...|=|+|+|
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAAT 317 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAAT 317 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeec
Confidence 9999999999999999999999999999999999998876666677788899999999999998888777765
No 58
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=1.6e-24 Score=200.16 Aligned_cols=154 Identities=41% Similarity=0.671 Sum_probs=138.5
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
+.|...|.+++|++..++.+.+.+.+++.+...+.++++.++.++||+||||||||++|+++|..++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe-EEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV-IIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~~~~~~ 436 (441)
+|+|+++..++.+|..|+...|+||||||+|.+++.|.+..++.+....+++.+||+.||++..... ++|++||
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN 292 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN 292 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 9999999999999999999999999999999999888665555555678899999999999877544 4555555
No 59
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-24 Score=182.13 Aligned_cols=154 Identities=36% Similarity=0.607 Sum_probs=141.7
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.|..+|.+++|++...+.+.+.++.++.|...+..+|+.|+.+++|+|+||||||-||++.|......|+++.+++++.+
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe-EEEEeeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV-IIYPISFI 437 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~~~~~~~ 437 (441)
|.|+..+-++++|+.|....|+++||||||.+...|=+.+++.....+|-.-+||+.||||..++- =+|+|||-
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 999999999999999999999999999999999999776666666677888899999999999664 46667764
No 60
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=207.24 Aligned_cols=150 Identities=42% Similarity=0.668 Sum_probs=136.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...|.++.|++++|+.|.+++.. +++...+.++|...++++||+||||||||.|||++|.+.+.||+.++++++..+++
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 46799999999999999999985 88999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCC-CCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG-SSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~-~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|.....++.+|..|+...||++|+||||.+...|++ ...+.++....-+|+||.+|||+...+.|||+|+|
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~t 457 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAAT 457 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEecc
Confidence 999999999999999999999999999999999953 22234444566799999999999999878888776
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.90 E-value=1.7e-23 Score=194.80 Aligned_cols=155 Identities=44% Similarity=0.706 Sum_probs=137.6
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+...|++++|++..++.+.+.+..++.+...+..++..++.++||+||||||||++|+++|..++.+++.+.++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeE-EEEeeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI-IYPISFI 437 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~~~~~~~ 437 (441)
+|+|+++..++.+|+.|+...|+||||||+|.+++.|++.+.+.+....+.+..||.+++++...+.| ||++||-
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999887655544455678889999999998775554 4455543
No 62
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.90 E-value=1.2e-23 Score=197.77 Aligned_cols=152 Identities=41% Similarity=0.696 Sum_probs=131.0
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------e
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS----------F 352 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~----------~ 352 (441)
..|...|.+++|++..++.+.+.+..++.+...+...++.++.++||+||||||||++|+++|..++.+ +
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 446678999999999999999999999999999999999999999999999999999999999998644 6
Q ss_pred EEechhhhhhhccCchHHHHHHHHHHHHhc----CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCC
Q 013506 353 FSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK 428 (441)
Q Consensus 353 ~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 428 (441)
+.+..+++.++|+|++++.++.+|+.++.. .|+|+||||+|++++.|+.+. +++...+++++||++||++...+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccCC
Confidence 678888999999999999999999998753 689999999999998886532 23445788999999999998865
Q ss_pred eEEEEeee
Q 013506 429 VIIYPISF 436 (441)
Q Consensus 429 ~v~~~~~~ 436 (441)
.|+|++||
T Consensus 333 ~ViVI~AT 340 (512)
T TIGR03689 333 NVIVIGAS 340 (512)
T ss_pred ceEEEecc
Confidence 55555544
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.90 E-value=5.7e-22 Score=175.67 Aligned_cols=217 Identities=19% Similarity=0.248 Sum_probs=155.2
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCC---CCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEE
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLK---WPRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVI 84 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~vll~Gp~GtGKT~l~~~l~~~l-------~~~~~~v 84 (441)
|..+++++|++++|+.|.+++.++... ......|.. ...+++|+||||||||++|+.+++.+ ..+++++
T Consensus 2 ~~~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 2 ERELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred hHHHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 467899999999999999998775443 333445554 33689999999999999999999875 2357778
Q ss_pred ccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
++.++...+.++....+..++..+. ++||||||+|.|....+ .....+.+..++..++.... +++
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE~~~L~~~~~--~~~~~~~i~~Ll~~~e~~~~------~~~ 145 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDEAYSLARGGE--KDFGKEAIDTLVKGMEDNRN------EFV 145 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEechhhhccCCc--cchHHHHHHHHHHHHhccCC------CEE
Confidence 8888888788887777777776543 57999999999864221 22344667778888776432 355
Q ss_pred EEEEcCCC-----CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH---------CCCCC
Q 013506 165 VVASTNRV-----DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATS---------CNGYV 229 (441)
Q Consensus 165 vi~~~~~~-----~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~---------~~g~~ 229 (441)
+++++.+. ..++|++.+ ||...+.|++++.+++.+|++.++.......+.+ +..+... ....+
T Consensus 146 vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn 223 (261)
T TIGR02881 146 LILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSN 223 (261)
T ss_pred EEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCch
Confidence 55554332 246789998 9988899999999999999999887765443322 2333221 12346
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 013506 230 GADLEALCREATMSAVKRSS 249 (441)
Q Consensus 230 ~~~i~~l~~~a~~~~~~~~~ 249 (441)
++.++++++.+......+..
T Consensus 224 ~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 224 ARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 78888888888777665543
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.90 E-value=4.8e-22 Score=177.01 Aligned_cols=219 Identities=21% Similarity=0.269 Sum_probs=162.0
Q ss_pred ccccc-cccchHHHHHHHHHHHHhhccCchHHHhcCCCC---CcEEEEEcCCCCcHHHHHHHHHHHhC-------CcEEE
Q 013506 15 WKAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLKW---PRGLLLYGPPGTGKTSLVRAVVRECG-------AHLTV 83 (441)
Q Consensus 15 ~~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vll~Gp~GtGKT~l~~~l~~~l~-------~~~~~ 83 (441)
...++ +++|++++|++|.+++.+ ...++.+.+.|+.+ +.+++|+||||||||++|+.++..+. .+++.
T Consensus 17 ~~~l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 17 LDQLDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 35666 699999999999998877 55667777788764 45899999999999999999888762 26888
Q ss_pred EccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 84 ISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
+++.++...+.+.....+..+++.+. +++|||||++.+.+... ......+.+..|+..++... .++
T Consensus 96 v~~~~l~~~~~g~~~~~~~~~~~~a~-------~gvL~iDEi~~L~~~~~-~~~~~~~~~~~Ll~~le~~~------~~~ 161 (284)
T TIGR02880 96 VTRDDLVGQYIGHTAPKTKEILKRAM-------GGVLFIDEAYYLYRPDN-ERDYGQEAIEILLQVMENQR------DDL 161 (284)
T ss_pred ecHHHHhHhhcccchHHHHHHHHHcc-------CcEEEEechhhhccCCC-ccchHHHHHHHHHHHHhcCC------CCE
Confidence 88877776666766666666666543 67999999998864322 22334567788888887543 256
Q ss_pred EEEEEcCCC--C---ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH-------CCCCCH
Q 013506 164 VVVASTNRV--D---AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATS-------CNGYVG 230 (441)
Q Consensus 164 ~vi~~~~~~--~---~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~-------~~g~~~ 230 (441)
++|++++.. + .++|++.+ ||...+.||+++.+++..|+..++.+.....+.+ ...+... ...-+.
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776543 2 35899999 9998999999999999999999988765433322 3333332 223468
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 013506 231 ADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 231 ~~i~~l~~~a~~~~~~~~~~ 250 (441)
+.++++++.+......|...
T Consensus 240 R~lrn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999988877766643
No 65
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.89 E-value=3.7e-23 Score=192.04 Aligned_cols=153 Identities=37% Similarity=0.647 Sum_probs=136.0
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.|..+|.+++|++..++.+.+.+..++.+...+..+++.++.++||+||||||||++|+++|..++.+++.+..+++.++
T Consensus 177 ~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCC-CeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA-KVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~~~~~~ 436 (441)
|+|+++..++.+|..|....|+|+||||+|.++..|....++.+....+.+..||+.||++... +++||++||
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN 330 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN 330 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC
Confidence 9999999999999999999999999999999998887554444444577889999999998654 455666665
No 66
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=8.6e-22 Score=175.02 Aligned_cols=218 Identities=20% Similarity=0.278 Sum_probs=157.6
Q ss_pred cccc-cccchHHHHHHHHHHHHhhccCchHHHhcCCCC---CcEEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEE
Q 013506 16 KAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLKW---PRGLLLYGPPGTGKTSLVRAVVRECG-------AHLTVI 84 (441)
Q Consensus 16 ~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vll~Gp~GtGKT~l~~~l~~~l~-------~~~~~v 84 (441)
..|+ +++|++++|++|.+++.+ ....+.+.+.|+.+ +.+++|+||||||||++|++++..+. .+++.+
T Consensus 19 ~~l~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v 97 (287)
T CHL00181 19 DILDEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTV 97 (287)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEe
Confidence 4454 799999999999998876 34456667777654 45799999999999999999988752 357888
Q ss_pred ccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+..++...+.+........++..+. ++||||||++.+..... ......+.+..|+..++... .+++
T Consensus 98 ~~~~l~~~~~g~~~~~~~~~l~~a~-------ggVLfIDE~~~l~~~~~-~~~~~~e~~~~L~~~me~~~------~~~~ 163 (287)
T CHL00181 98 TRDDLVGQYIGHTAPKTKEVLKKAM-------GGVLFIDEAYYLYKPDN-ERDYGSEAIEILLQVMENQR------DDLV 163 (287)
T ss_pred cHHHHHHHHhccchHHHHHHHHHcc-------CCEEEEEccchhccCCC-ccchHHHHHHHHHHHHhcCC------CCEE
Confidence 8877777677766666666665542 67999999999864322 22345677888888887543 2467
Q ss_pred EEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHH----HC--CC-CCHH
Q 013506 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIAT----SC--NG-YVGA 231 (441)
Q Consensus 165 vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~----~~--~g-~~~~ 231 (441)
+|++++... .++|.+.+ ||...+.|++|+.+++.+|+..++.+........ ...+.. .. .. -+++
T Consensus 164 vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR 241 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANAR 241 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHH
Confidence 777765421 44699999 9999999999999999999999987765433222 222222 11 22 3489
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 013506 232 DLEALCREATMSAVKRSSD 250 (441)
Q Consensus 232 ~i~~l~~~a~~~~~~~~~~ 250 (441)
.++++++.+......|...
T Consensus 242 ~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 242 SVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999988877776654
No 67
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.8e-23 Score=194.89 Aligned_cols=152 Identities=38% Similarity=0.628 Sum_probs=134.6
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.....+.++.|.++.|+.+.+.+.. ++...++..+|..-+.+++|+||||||||.+||++|.+.+-|++.+++|++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3456789999999999999999885 666677777788889999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|+|-....+|.+|.+|++..||++||||+|.+...|+.+-.+.....+..+|+||.+|||+.....|+++|+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT 295 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC
Confidence 9999999999999999999999999999999999997654455566677899999999999976666666554
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.89 E-value=8e-23 Score=197.30 Aligned_cols=153 Identities=40% Similarity=0.672 Sum_probs=133.8
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+..+|++++|++.+++.+.+.+.. +.+...+...+..++.++||+||||||||++|+++|..++.+++.++.+++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 34567899999999999999988875 67777777778888899999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.|.|.+++.++.+|+.|....|+||||||+|.+++.|+....+.+....+++++||++||++.+...|+|++||
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAAT 200 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEec
Confidence 99999999999999999999999999999999999887643344455678999999999999876666665554
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.89 E-value=1.8e-22 Score=177.82 Aligned_cols=103 Identities=22% Similarity=0.221 Sum_probs=91.0
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHh-----cCCeEEEEeccc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARL-----AAPSIIFFDEAD 393 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDE~d 393 (441)
.++.++.+++|+||||||||.+|+++|..++.+++.++++++.++|+|++++.++++|..|.. ..||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 467889999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred ccccccCCCCCCCcchhhHH-HHHHHHHhcCC
Q 013506 394 VVGAKRGGSSSTSITVGERL-LSTLLTEMDGL 424 (441)
Q Consensus 394 ~~~~~r~~~~~~~~~~~~~~-~~~ll~~l~~~ 424 (441)
++++.|+. ++.+...++ ..+||+.||+.
T Consensus 223 A~~g~r~~---~~~tv~~qiV~~tLLnl~D~p 251 (413)
T PLN00020 223 AGAGRFGT---TQYTVNNQMVNGTLMNIADNP 251 (413)
T ss_pred hcCCCCCC---CCcchHHHHHHHHHHHHhcCC
Confidence 99999873 233444455 48999999873
No 70
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.88 E-value=1.1e-21 Score=161.72 Aligned_cols=192 Identities=25% Similarity=0.364 Sum_probs=126.5
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
+..|++++||+++++.+.-++...... -.+..+++||||||+||||+|+.+|++++.++..+++..+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 378899999999999988776432111 123468999999999999999999999999998887754322
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----C-------CCCCe
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K-------TSVPH 162 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~-------~~~~~ 162 (441)
...+..++... .++.||||||+|.+ +....+.|+..++..... . -..+.
T Consensus 89 ---~~dl~~il~~l------~~~~ILFIDEIHRl----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNL------KEGDILFIDEIHRL----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT--------TT-EEEECTCCC------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhc------CCCcEEEEechhhc----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12233333222 24689999999998 556788888988864321 1 12356
Q ss_pred EEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCRE 239 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~ 239 (441)
+.+|++|+....+++.++. ||.....+..|+.+++.+|+......+....+.+ ...++.++.| +++-..++++.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 8999999999999999998 9998889999999999999998877777664444 6777777775 45655555443
No 71
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.9e-22 Score=174.49 Aligned_cols=148 Identities=35% Similarity=0.539 Sum_probs=134.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
..+|.+++|++.+++++.+.+..++.+...+... ...|..++||+||||||||.+|+++|...++.++.+.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 4579999999999999999999999999888543 456788999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe--EEEEeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV--IIYPISF 436 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~--v~~~~~~ 436 (441)
.|+.++.++.+|.-|..-.|+++||||+|+++..|+ ++.++....+-++|....||+..... |+|+|||
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgAT 238 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGAT 238 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCC
Confidence 999999999999999999999999999999999883 45677788889999999999988664 8998886
No 72
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-21 Score=165.80 Aligned_cols=152 Identities=35% Similarity=0.595 Sum_probs=140.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccC
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVG 366 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g 366 (441)
.+|+.++|....-..+.+.+..++.....+.++++.||.+++++||||+|||.+|+++|..++.+++.+..+.+.++|+|
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeE-EEEeeeee
Q 013506 367 ESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI-IYPISFIF 438 (441)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v-~~~~~~~~ 438 (441)
++.+-+++.|..|+.-.|||+|+||||.+.++|-.++++.+....|-+=.|+.+|||+..-++| +|.|+|-|
T Consensus 209 EsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred cHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc
Confidence 9999999999999999999999999999999998888888888888899999999999886654 66777755
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.87 E-value=1.8e-21 Score=180.99 Aligned_cols=154 Identities=44% Similarity=0.728 Sum_probs=135.4
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+...|++++|++..++.+.+++..++.+...+..++..++.+++|+||||||||++|+++|..++.+++.+..+++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCC-CeEEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA-KVIIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~v~~~~~~ 436 (441)
.|+|+....++.+|+.++...|+||||||+|.+...|.+...+.+....+.+..+|.+++++... +++||++||
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999988999999999999998887654444455678889999999988654 445555555
No 74
>CHL00176 ftsH cell division protein; Validated
Probab=99.86 E-value=3.3e-21 Score=187.69 Aligned_cols=150 Identities=39% Similarity=0.661 Sum_probs=130.5
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...++++.|++.+++.+.+.+.. +.....+..++..++.++||+||||||||++|+++|..++.+++.++++++...|.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 45789999999999999988765 56666777788888999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|.....++.+|..|....||||||||+|.+...|+.+.++.+......++.||.+||++.....|+|+++|
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT 328 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT 328 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence 99999999999999999999999999999998887655455566678999999999998776555555544
No 75
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.9e-21 Score=173.31 Aligned_cols=148 Identities=41% Similarity=0.620 Sum_probs=131.1
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|+++.|++.+++.+.+++.++......+.. ...|..++||.||||+|||.+++++|.+.+..++.++.+++.++|
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~g-lr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLG-LREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhc-cccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 4467999999999999999999999888777765 345567899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC--CCeEEEEeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--AKVIIYPISF 436 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~~~~~~ 436 (441)
+|++++.++.+|+-|+...|.|+|+||+|+++..|.+ .....+.|+..++|-.+++... +++|+|+|||
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaT 297 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGAT 297 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecC
Confidence 9999999999999999999999999999999999943 4556678999999999999776 4467777665
No 76
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.4e-21 Score=171.38 Aligned_cols=144 Identities=34% Similarity=0.515 Sum_probs=119.7
Q ss_pred ccCch-hHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-ceEEechhhhhhhccCchH
Q 013506 292 IGGLR-DLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-SFFSLSGAELYSMYVGESE 369 (441)
Q Consensus 292 i~g~~-~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-~~~~i~~~~~~~~~~g~~~ 369 (441)
++|++ +.....+..+...+-......++|..+-.++||+||||||||-+||.++.+++. +.-.+++++++++|+|++|
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 45654 333444555555555667778889999999999999999999999999999964 5678999999999999999
Q ss_pred HHHHHHHHHHHh--------cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 370 ALLRNTFQRARL--------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 370 ~~~~~~~~~a~~--------~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+++|++|+.|.. +.--|++|||+|.++..||..+ ++++..+.++|+||.-|||++.-..|+|+|-|
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMT 376 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQLNNILVIGMT 376 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhhhcEEEEecc
Confidence 999999999953 2234999999999999998755 45688999999999999999998888888854
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=2.4e-19 Score=158.16 Aligned_cols=174 Identities=25% Similarity=0.395 Sum_probs=132.7
Q ss_pred ccccccccchHHHH---HHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc
Q 013506 15 WKAEEAIGGNRAAV---EALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (441)
Q Consensus 15 ~~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~ 91 (441)
..++++++||+... ..|.+.+.. ..-.+++|||||||||||+|+.++...+..|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 36789999999986 345555432 23468999999999999999999999999999998744
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc--
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST-- 169 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~-- 169 (441)
...+.++.+++++......++..||||||+|.+ +...++.|+..++.. .+++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf----------nK~QQD~lLp~vE~G--------~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF----------NKAQQDALLPHVENG--------TIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc----------ChhhhhhhhhhhcCC--------eEEEEeccCC
Confidence 345678888888877776788899999999988 445678888888764 47888876
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc--CCCC-----C-cccHHHHHHHCCCCC
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK--VPLD-----A-NVDLEAIATSCNGYV 229 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~--~~~~-----~-~~~~~~l~~~~~g~~ 229 (441)
|+...+++++++ |.. ++.+.+.+.++..+++...+.. .... . +.....++..+.|-.
T Consensus 142 NPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 142 NPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred CCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 566799999999 885 8999999999999999873322 2222 1 223566666666643
No 78
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-20 Score=184.39 Aligned_cols=149 Identities=38% Similarity=0.599 Sum_probs=137.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CceEEechhhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-----ASFFSLSGAEL 360 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~-----~~~~~i~~~~~ 360 (441)
...|++++|++.+...+.+.+..++.+.+.+.++++.|+.++||+||||||||..|+++|..+. ..++.-++.+.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 4679999999999999999999999999999999999999999999999999999999999883 46888889999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
+++|+|+.+.+++.+|+.|+...|.|+||||||-++|.|..- .......++++||.-|||...++.|+|+|+|.
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999998542 33445688999999999999999999999984
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=1.1e-18 Score=146.80 Aligned_cols=194 Identities=26% Similarity=0.359 Sum_probs=144.4
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
.+.|++.+|++++|+.|.-++...... -....|+||+||||.||||+|+.+|++++.++-..++..+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 477899999999999999888542221 134578999999999999999999999999888777765432
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC------------CCCCCCCe
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK------------PSKTSVPH 162 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~~ 162 (441)
...+..++... ...+||||||||.+.+ .+-..|+..++... ...-..+.
T Consensus 91 ---~gDlaaiLt~L------e~~DVLFIDEIHrl~~----------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ---PGDLAAILTNL------EEGDVLFIDEIHRLSP----------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---hhhHHHHHhcC------CcCCeEEEehhhhcCh----------hHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22333333322 2478999999999843 34455566665422 11234577
Q ss_pred EEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+++|++|.+...++..++. ||..+..+..|+.+++.+|+......+....+.+ ...++.+..|. ++-...++++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999998887777765544 67778877765 454445555443
No 80
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-17 Score=164.50 Aligned_cols=163 Identities=24% Similarity=0.356 Sum_probs=109.3
Q ss_pred cccccch-HHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEcc
Q 013506 18 EEAIGGN-RAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVISP 86 (441)
Q Consensus 18 ~~~i~G~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----------~~~~~v~~ 86 (441)
++-++|. ++..+.+.+++.. +.+++-+|+|.||+|||.++.-++.... ..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5677787 6666666666644 3457889999999999999999998762 23445554
Q ss_pred Cccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 87 HSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
..+. ..+-++.+.++..+.+.+.. .+.+-|||+||+|-+.......+ .......|...+.+. .++
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~--~~d~~nlLkp~L~rg--------~l~ 318 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYG--AIDAANLLKPLLARG--------GLW 318 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhc---CCCcEEEEecceeeeecCCCcch--HHHHHHhhHHHHhcC--------CeE
Confidence 4322 33455667777777766553 34578999999999876654321 223344444444332 279
Q ss_pred EEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc
Q 013506 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 165 vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
+|++|.... .-+|++.+ ||+ .+.++.|+.+....|+......
T Consensus 319 ~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 319 CIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred EEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhh
Confidence 999876322 34789998 997 6889999988777777655444
No 81
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-18 Score=153.48 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=149.4
Q ss_pred cccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccc
Q 013506 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH 93 (441)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~ 93 (441)
+.+.|++++=.-..+..|.++... ..+.+ ..-.+-++|+||||||||||++++.++..-+..+..+.+.++.-.
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~a-TaNTK----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIA-TANTK----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHH-hcccc----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 345578888777777777775432 11111 112344789999999999999999999999988877776654322
Q ss_pred ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHH-HHHHHHhcCCCCCCCCCeEEEEEEcCCC
Q 013506 94 VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIAS-QLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (441)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~vi~~~~~~ 172 (441)
-.+....+.++|+++... .++.+|||||+|..+-....... + +.+. .|..++-+... ....++++.++|.|
T Consensus 424 G~qaVTkiH~lFDWakkS---~rGLllFIDEADAFLceRnktym-S-EaqRsaLNAlLfRTGd---qSrdivLvlAtNrp 495 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKS---RRGLLLFIDEADAFLCERNKTYM-S-EAQRSALNALLFRTGD---QSRDIVLVLATNRP 495 (630)
T ss_pred chHHHHHHHHHHHHHhhc---ccceEEEehhhHHHHHHhchhhh-c-HHHHHHHHHHHHHhcc---cccceEEEeccCCc
Confidence 224456788999988754 35789999999987654432211 1 2222 22222222211 11258999999999
Q ss_pred CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc---------------------------ccHHHHHHHC
Q 013506 173 DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN---------------------------VDLEAIATSC 225 (441)
Q Consensus 173 ~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~---------------------------~~~~~l~~~~ 225 (441)
..+|.++.. |++.+++||.|..++|.+++..+++++-...+ ..+...+..+
T Consensus 496 gdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT 573 (630)
T KOG0742|consen 496 GDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT 573 (630)
T ss_pred cchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc
Confidence 999999998 99999999999999999999888776532111 1166778899
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 013506 226 NGYVGADLEALCREATMS 243 (441)
Q Consensus 226 ~g~~~~~i~~l~~~a~~~ 243 (441)
.||++++|..++..+...
T Consensus 574 eGfSGREiakLva~vQAa 591 (630)
T KOG0742|consen 574 EGFSGREIAKLVASVQAA 591 (630)
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 999999999988765543
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=8.6e-19 Score=139.42 Aligned_cols=131 Identities=41% Similarity=0.677 Sum_probs=109.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-C
Q 013506 56 LLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-H 134 (441)
Q Consensus 56 vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~ 134 (441)
|+|+||||||||++++.+++.++.+++.+++..+.....+...+.+...+..+.... +|+|+||||+|.+.+... .
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~vl~iDe~d~l~~~~~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA---KPCVLFIDEIDKLFPKSQPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS---TSEEEEEETGGGTSHHCSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccc---cceeeeeccchhcccccccc
Confidence 689999999999999999999999999999999988888888889999998876542 489999999999987762 3
Q ss_pred CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecC
Q 013506 135 RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV 193 (441)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~ 193 (441)
........+..++..++..... ..++++|+++|.++.+++.+.+ +||+..++++.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccc---cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3344567788888888876543 2358999999999999999996 69998888863
No 83
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.9e-18 Score=154.12 Aligned_cols=204 Identities=23% Similarity=0.312 Sum_probs=152.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
.+|+.++=-.+.|+.|.+=+...........+.|.++.++.|||||||||||+++.++|+.++..++-++.......
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 67888888888999999888887788888999999999999999999999999999999999998887766554322
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCch--------hhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE--------QDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
. .++.++-... ..+||+|+|||.-+...+.... ...-.+..|++.+|+.....+. --++|.
T Consensus 275 --~-dLr~LL~~t~------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~--ERIivF 343 (457)
T KOG0743|consen 275 --S-DLRHLLLATP------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD--ERIIVF 343 (457)
T ss_pred --H-HHHHHHHhCC------CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC--ceEEEE
Confidence 1 2445444332 3689999999976442221111 1335678899999987655421 357888
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCC--CCHHHHHH
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNG--YVGADLEA 235 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g--~~~~~i~~ 235 (441)
|||..+.|||++.|+||++..+++...+.+....++..++.... ...-+.++.....+ .+++++..
T Consensus 344 TTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 344 TTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred ecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 99999999999999999999999999999999999988877533 11123333333322 46666643
No 84
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.80 E-value=5.1e-19 Score=174.78 Aligned_cols=149 Identities=38% Similarity=0.643 Sum_probs=125.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccC
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVG 366 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g 366 (441)
..+.++.+....++.+.+.+.. ..........+...+.+++|+||||||||++|+++|..++.+++.++++++...|.+
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 4577888999999988888775 333344445566667789999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 367 ESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.....++.+|..|....||||||||+|.+.+.|+....+......++++.||.+||++.+...|+|++||
T Consensus 228 ~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaT 297 (644)
T PRK10733 228 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 297 (644)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEec
Confidence 9999999999999999999999999999999887654444556678999999999999876665555554
No 85
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.79 E-value=1.9e-18 Score=137.49 Aligned_cols=108 Identities=39% Similarity=0.624 Sum_probs=95.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcC-CeEEEEecccccccccCCCCCC
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAA-PSIIFFDEADVVGAKRGGSSST 405 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDE~d~~~~~r~~~~~~ 405 (441)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+++.+.+..+|+.+.... |+|+||||+|.+++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 589999999999999999999999999999999998899999999999999998887 9999999999999877 223
Q ss_pred CcchhhHHHHHHHHHhcCCCCC--CeEEEEeeee
Q 013506 406 SITVGERLLSTLLTEMDGLEQA--KVIIYPISFI 437 (441)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~--~~v~~~~~~~ 437 (441)
......++++.|+..|+..... ..++|++||-
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccceeeecccccccccccceeEEeeCC
Confidence 5566789999999999998885 3455555553
No 86
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=148.74 Aligned_cols=184 Identities=32% Similarity=0.480 Sum_probs=141.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEccCc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHS 88 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---------~~~~~v~~~~ 88 (441)
+.++=-...|+.|-.+....+.+.+..-+-. +...+-+||+||||||||+|++++|.++. ...++++++.
T Consensus 142 EsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs 221 (423)
T KOG0744|consen 142 ESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS 221 (423)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH
Confidence 3444445678888877655444333322211 34557899999999999999999999883 3568899999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCC--eEEEEccccccccCCC-----CCchhhHHHHHHHHHHHhcCCCCCCCCC
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKP--SVVFIDEIDALCPRRD-----HRREQDVRIASQLFTLMDSNKPSKTSVP 161 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~il~iDe~~~l~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (441)
+.+.+.++..+.+..+|++....... ++ -.++|||++++...+. .......++++.++.++|+.+ +.+
T Consensus 222 LFSKWFsESgKlV~kmF~kI~ELv~d-~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK----~~~ 296 (423)
T KOG0744|consen 222 LFSKWFSESGKLVAKMFQKIQELVED-RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK----RYP 296 (423)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhC-CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc----cCC
Confidence 99999999999999999887654322 23 3567999999875442 222345588999999999876 456
Q ss_pred eEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc
Q 013506 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 162 ~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
++++++|+|..+.+|.++.. |-+.+.++.+|+...+.+|++..+..
T Consensus 297 NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 89999999999999999998 99999999999999999999876554
No 87
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.5e-19 Score=150.28 Aligned_cols=151 Identities=27% Similarity=0.364 Sum_probs=111.4
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CceEEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAE---------ASFFSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKTtla~~la~~~~---------~~~~~i~~ 357 (441)
-|+.+.--..+|+.+..+....+...+....- .+.-.+-+|+.||||||||+++|++|+.+. ..+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 35555555678888887776444433222211 112244579999999999999999999883 46899999
Q ss_pred hhhhhhccCchHHHHHHHHHHHHh-----cCCeEEEEecccccccccC-CCCCCCcchhhHHHHHHHHHhcCCCCCCeEE
Q 013506 358 AELYSMYVGESEALLRNTFQRARL-----AAPSIIFFDEADVVGAKRG-GSSSTSITVGERLLSTLLTEMDGLEQAKVII 431 (441)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDE~d~~~~~r~-~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~ 431 (441)
..++++|.+++.+.+.++|++... +.-..++|||+++++..|. ..+.+..+.+-|++|+||++||.+.....|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999999853 2334788999999999883 2333344446799999999999998866665
Q ss_pred EEe-eeee
Q 013506 432 YPI-SFIF 438 (441)
Q Consensus 432 ~~~-~~~~ 438 (441)
+++ |||-
T Consensus 300 iL~TSNl~ 307 (423)
T KOG0744|consen 300 ILATSNLT 307 (423)
T ss_pred EEeccchH
Confidence 555 5553
No 88
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=4.5e-17 Score=151.25 Aligned_cols=187 Identities=19% Similarity=0.243 Sum_probs=134.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+||||||+|+.+|+.++..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 68899999999999999987541 234569999999999999999999998653
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++++.. ......++.+..........++..|+||||+|.| +....+.|+..++
T Consensus 83 ~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L----------s~~A~NALLKtLE 146 (484)
T PRK14956 83 EITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML----------TDQSFNALLKTLE 146 (484)
T ss_pred HHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc----------CHHHHHHHHHHhh
Confidence 12222211 1112334444444443333456789999999988 4467888888887
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... .++++|.+|+.+..+.+.+++ |+. .+.|..++.++..+.++..+.......+. .+..++....|- .
T Consensus 147 EPp------~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~ 216 (484)
T PRK14956 147 EPP------AHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-V 216 (484)
T ss_pred cCC------CceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-H
Confidence 632 368888889989999999999 885 79999999999999999888766554333 367777777754 5
Q ss_pred HHHHHHHHHH
Q 013506 231 ADLEALCREA 240 (441)
Q Consensus 231 ~~i~~l~~~a 240 (441)
|+.-.+++.+
T Consensus 217 RdAL~lLeq~ 226 (484)
T PRK14956 217 RDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 89
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=6.4e-18 Score=150.30 Aligned_cols=136 Identities=20% Similarity=0.359 Sum_probs=103.8
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCC---CCceEEEECCCCCcHHHHHHHHHHHc-------CCceEEechhh
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGIS---PVRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAE 359 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ll~Gp~GtGKTtla~~la~~~-------~~~~~~i~~~~ 359 (441)
.+++|++.+|+++.+++.+.. ......+.+.. ++.|++|+||||||||++|+++|..+ ..+++.++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 468999999999999887632 23333344443 34579999999999999999999976 23689999999
Q ss_pred hhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 360 LYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
+.+.|+|+++..++.+++.+. ++||||||+|.+...++ ..+++.+++++|++.|++..+. .+||+++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~-----~~~~~~e~~~~L~~~me~~~~~-~~vI~ag 168 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN-----ERDYGSEAIEILLQVMENQRDD-LVVIFAG 168 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC-----ccchHHHHHHHHHHHHhcCCCC-EEEEEeC
Confidence 999999999888888888864 35999999999875332 2345689999999999975433 3444443
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=2.1e-16 Score=144.33 Aligned_cols=192 Identities=26% Similarity=0.368 Sum_probs=131.9
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
+|++++|++++++.|..++...... -..+.+++|+||||||||++++.++..++..+..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5689999999999999887532111 123467999999999999999999999988766655432211
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCeEE
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPHVV 164 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~ 164 (441)
...+...+.. ...+.+|||||++.+.+ .....++..++..... ....+.+.
T Consensus 69 -~~~l~~~l~~------~~~~~vl~iDEi~~l~~----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTN------LEEGDVLFIDEIHRLSP----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHh------cccCCEEEEehHhhhCH----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 1112222222 12467999999998742 2334455555432210 11224478
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
++++++.+..+++++.+ ||...+.+++|+.+++.++++..........+. .+..++..+.|.. +.+..+++.+.
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 88889999999999998 998788999999999999999887765544332 3677888888765 55556666543
No 91
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=1e-17 Score=149.30 Aligned_cols=126 Identities=23% Similarity=0.386 Sum_probs=101.4
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCC---CCceEEEECCCCCcHHHHHHHHHHHcC-------CceEEechhhh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGIS---PVRGALLHGPPGCSKTTLAKAAAHAAE-------ASFFSLSGAEL 360 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ll~Gp~GtGKTtla~~la~~~~-------~~~~~i~~~~~ 360 (441)
.++|++.+|+++.+.+.+ +.......+.|+. ++.|++|+||||||||++|+++|..+. .+++.++.+++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998876 4444444455655 355899999999999999999988772 36899999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
.+.|+|+++.+++.+|+.|.. +||||||++.+.+.++ ...++.++.+.|++.|+...
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~~ 158 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQR 158 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcCC
Confidence 999999999889999998743 5999999999875432 23456789999999998654
No 92
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.74 E-value=2.7e-16 Score=144.32 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=136.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|+++.++.+..++..... .-.++.+++|+||||||||++++.+++.++..+..+++..+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 6789999999999999988753111 1134578999999999999999999999998877665543221
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCeE
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPHV 163 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~ 163 (441)
...+...+... ..+++|||||+|.+.+ .....+...++..... ....+.+
T Consensus 90 --~~~l~~~l~~l------~~~~vl~IDEi~~l~~----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 90 --PGDLAAILTNL------EEGDVLFIDEIHRLSP----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred --hHHHHHHHHhc------ccCCEEEEecHhhcch----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 12233333221 2478999999998732 1223344444432110 0122457
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+|++++....+++++.+ ||...+.+++|+.+++.++++..........+. .+..++..+.|.. +.+..+++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 889999999999999988 998789999999999999999887776655443 3778888888754 666666665443
Q ss_pred H
Q 013506 243 S 243 (441)
Q Consensus 243 ~ 243 (441)
.
T Consensus 229 ~ 229 (328)
T PRK00080 229 F 229 (328)
T ss_pred H
Confidence 3
No 93
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=2.1e-16 Score=152.33 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=135.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++++|++.+++.|+.++... ...+.+||+||+||||||+++.+++.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 67899999999999999987531 234567999999999999999999988642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
+++++... ......++.+++........++..|+||||+|.| +....+.|++.++
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L----------T~~A~NALLKtLE 144 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML----------TNHAFNAMLKTLE 144 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC----------CHHHHHHHHHHHH
Confidence 22222211 1122345555555544444456789999999988 3356778888888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
.... ++.||.+|+.+..+.+.+++ |+. .+.|..++.++..+.++..+.......+. .+..++..+.|- .
T Consensus 145 EPP~------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-m 214 (830)
T PRK07003 145 EPPP------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-M 214 (830)
T ss_pred hcCC------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 7432 57888889999999999998 885 89999999999999999888766554333 366777777764 4
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 55445544443
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=1.2e-17 Score=148.01 Aligned_cols=130 Identities=22% Similarity=0.392 Sum_probs=101.6
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCC---CCceEEEECCCCCcHHHHHHHHHHHc-------CCceEEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGIS---PVRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~---~~~~~ll~Gp~GtGKTtla~~la~~~-------~~~~~~i~~ 357 (441)
.+.++.|++.+|+.+.+++.+..... .....|.. ...|++|+|||||||||+|+++|+.+ ...++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~-~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINE-KRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 35678999999999999887754432 22223333 34589999999999999999999875 347889999
Q ss_pred hhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCC
Q 013506 358 AELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (441)
Q Consensus 358 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (441)
+++.+.|+|++...++.+|+.+. ++||||||+|.+.. + +...+....+++|++.|+.....
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~--~----~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR--G----GEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc--C----CccchHHHHHHHHHHHHhccCCC
Confidence 99999999999999999998874 35999999999863 1 12345678899999999976443
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.6e-16 Score=151.21 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=136.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++|+|++.+++.|.+++... +.++.+||+||+|+|||++++.+++.+++.
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 67899999999999999988542 234678999999999999999999998751
Q ss_pred --------------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHH
Q 013506 81 --------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQL 146 (441)
Q Consensus 81 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l 146 (441)
+++++... ......++++.+........++..|+||||+|.| +....+.|
T Consensus 81 C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L----------s~~AaNAL 144 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML----------TNHAFNAM 144 (700)
T ss_pred cHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc----------CHHHHHHH
Confidence 11222110 1123445666655554444556789999999988 33567888
Q ss_pred HHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHC
Q 013506 147 FTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSC 225 (441)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~ 225 (441)
++.++... .++.||.+|+.+..+.+.+++ |+. .+.|..++.++..+.++..+.......+.+ +..++..+
T Consensus 145 LKTLEEPP------~~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 145 LKTLEEPP------EHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHhhccCC------CCceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 88887633 257888889999999999999 885 899999999999999988877655544433 56667776
Q ss_pred CCCCHHHHHHHHHHHH
Q 013506 226 NGYVGADLEALCREAT 241 (441)
Q Consensus 226 ~g~~~~~i~~l~~~a~ 241 (441)
.| +.++...++..+.
T Consensus 216 ~G-s~RdALsLLdQai 230 (700)
T PRK12323 216 QG-SMRDALSLTDQAI 230 (700)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 4555555555433
No 96
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=1.4e-17 Score=172.18 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=89.8
Q ss_pred hhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc----------cC------------------
Q 013506 315 AFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY----------VG------------------ 366 (441)
Q Consensus 315 ~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~----------~g------------------ 366 (441)
...++|..|+.|+||+||||||||.+||++|..++.+++.+.++++++.| +|
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 33567888999999999999999999999999999999999999998754 12
Q ss_pred -------------chHH--HHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhH-HHHHHHHHhcCCC----C
Q 013506 367 -------------ESEA--LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGER-LLSTLLTEMDGLE----Q 426 (441)
Q Consensus 367 -------------~~~~--~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~-~~~~ll~~l~~~~----~ 426 (441)
..+. .++.+|+.|++..||||||||||.+.+.. .++ .++.||++||+.. .
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d----------s~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE----------SNYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc----------cceehHHHHHHHhccccccCCC
Confidence 1222 37889999999999999999999998541 123 3899999999863 2
Q ss_pred CCeEEEEeeee
Q 013506 427 AKVIIYPISFI 437 (441)
Q Consensus 427 ~~~v~~~~~~~ 437 (441)
+++|||+|||.
T Consensus 1771 ~~VIVIAATNR 1781 (2281)
T CHL00206 1771 RNILVIASTHI 1781 (2281)
T ss_pred CCEEEEEeCCC
Confidence 34555555554
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.8e-16 Score=147.15 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=128.9
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC---------------
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--------------- 79 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~--------------- 79 (441)
+..|++++|++.+++.|...+... ..++.++|+|||||||||+|+.+++.++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 367899999999999998877542 23467999999999999999999998864
Q ss_pred ---------cEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH
Q 013506 80 ---------HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (441)
Q Consensus 80 ---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~ 150 (441)
.++.+++.. ......++.+...+......++..++||||+|.+ ....+..|+..+
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L----------t~~a~~~LLk~L 141 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML----------TKEAFNALLKTL 141 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh----------HHHHHHHHHHHH
Confidence 233333321 1112234444444433333455689999999987 334567778887
Q ss_pred hcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCC
Q 013506 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYV 229 (441)
Q Consensus 151 ~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~ 229 (441)
+.... ++++|.+++.+..+++++.+ |+. .+.|.+++.++...+++..+.......+ ..+..++..+.| .
T Consensus 142 E~p~~------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 142 EEPPS------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HhCCC------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 76322 46677667677789999998 885 8999999999999999988766554433 236777776665 3
Q ss_pred HHHHHHHHHH
Q 013506 230 GADLEALCRE 239 (441)
Q Consensus 230 ~~~i~~l~~~ 239 (441)
.+.+-+.++.
T Consensus 212 lR~aln~Le~ 221 (472)
T PRK14962 212 LRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 98
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.6e-16 Score=148.52 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=136.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 67899999999999999988541 234788999999999999999999998652
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+..........++..|+||||+|.| +....+.|+..++
T Consensus 80 ~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L----------S~~A~NALLKtLE 143 (702)
T PRK14960 80 AVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML----------STHSFNALLKTLE 143 (702)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHh
Confidence 23333221 1123345566555544444456789999999988 3356778888887
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
... +++.+|.+|+.+..+++.+++ |+. .+.|.+++.++..+.+...+.+.....+.. +..++..+.| +.
T Consensus 144 EPP------~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 144 EPP------EHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred cCC------CCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 633 246777777888888888887 885 899999999999999998887766554433 6677777665 56
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+++.+++..+.
T Consensus 214 RdALnLLDQaI 224 (702)
T PRK14960 214 RDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHH
Confidence 66666655544
No 99
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=3e-16 Score=159.07 Aligned_cols=207 Identities=25% Similarity=0.300 Sum_probs=135.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc--------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-------- 90 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~-------- 90 (441)
+++.|++++|+.+.+++..+... +-..+.+++|+||||||||++++++++.++.+++.++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35899999999999987653221 112345799999999999999999999999999988764332
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc---------CCCCCCCC
Q 013506 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS---------NKPSKTSV 160 (441)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~ 160 (441)
..+.+.....+...+..+.. ...|+||||+|.+.+...+ +....|+..++. ........
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~-----~~~villDEidk~~~~~~~------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKT-----KNPLFLLDEIDKIGSSFRG------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCc-----CCCEEEEechhhcCCccCC------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 12334444445555544322 2348999999999753321 113445555542 11111122
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhc-----cCCCC---Cccc---HHHHHH-HCCCC
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK-----KVPLD---ANVD---LEAIAT-SCNGY 228 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~-----~~~~~---~~~~---~~~l~~-~~~g~ 228 (441)
.++++|+|+|..+.+++++++ ||. ++.|+.|+.+++.+|++.++. ..... ...+ +..++. .+..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 468999999999999999999 995 899999999999999987652 11211 1122 444444 33345
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 013506 229 VGADLEALCREATMSAVK 246 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~ 246 (441)
..+.++..++..+.....
T Consensus 539 g~R~l~r~i~~~~~~~~~ 556 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAV 556 (775)
T ss_pred CChHHHHHHHHHHHHHHH
Confidence 567777766665554433
No 100
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.2e-15 Score=150.01 Aligned_cols=188 Identities=21% Similarity=0.236 Sum_probs=133.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~-------------- 81 (441)
..|++|+|++.+++.|.+++... +.++.+||+||+|||||++++.+++.+++..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 67899999999999999887541 2345679999999999999999999987531
Q ss_pred ----------EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 82 ----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 82 ----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
+++++.. ......++.+..........++..|+||||+|.| ....++.|++.++
T Consensus 81 ~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L----------T~eAqNALLKtLE 144 (944)
T PRK14949 81 EIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML----------SRSSFNALLKTLE 144 (944)
T ss_pred HHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc----------CHHHHHHHHHHHh
Confidence 1111100 1112335555554444333456789999999988 4577889999998
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
.... ++.+|.+|+.+..+.+.+++ |+. .+.|.+++.++....++..+.......+. .+..++..+.| ..
T Consensus 145 EPP~------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~ 214 (944)
T PRK14949 145 EPPE------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SM 214 (944)
T ss_pred ccCC------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7432 56777778888889889988 884 89999999999999998887765444332 36667777665 45
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
|.+..++..+.
T Consensus 215 R~ALnLLdQal 225 (944)
T PRK14949 215 RDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=9.8e-16 Score=146.62 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=135.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+++.++..
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 67899999999999999988541 234568999999999999999999988642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++++.. ......++.+.+........++..|+||||+|.| +....+.|+..++
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l----------s~~a~naLLk~LE 144 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHML----------SGHSFNALLKTLE 144 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhc----------CHHHHHHHHHHHh
Confidence 33333321 1223345555555544444456789999999988 3356778888888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... +++.+|.+|+.+..+.+.+.+ |+. .+.|.+++.++....+...+.......+. .+..++..+.| +.
T Consensus 145 epp------~~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 145 EPP------SHVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred ccC------CCeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 743 256777777888888888888 884 78999999999999888887776654333 35666766654 56
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+++.++++.+.
T Consensus 215 R~al~lLdq~i 225 (509)
T PRK14958 215 RDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHH
Confidence 67666665544
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.70 E-value=8.2e-16 Score=131.00 Aligned_cols=181 Identities=20% Similarity=0.275 Sum_probs=131.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------EEEEccCcc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH------LTVISPHSV 89 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~------~~~v~~~~~ 89 (441)
..+++++|++.+++.|...+.. ....++|||||||||||+.+++++++++.+ +...++++.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 7899999999999999998754 234689999999999999999999998752 223333333
Q ss_pred ccccccchHHHHHHHHHHHHhhh------hcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 90 HKAHVGESEKALREAFSQASSHA------LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
....+. ...+ ..|....... ......|+++||+|.| ..+++..|.+.++.... ++
T Consensus 100 rGisvv--r~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm----------tsdaq~aLrr~mE~~s~------~t 160 (346)
T KOG0989|consen 100 RGISVV--REKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSM----------TSDAQAALRRTMEDFSR------TT 160 (346)
T ss_pred ccccch--hhhh-cCHHHHhhccccccCCCCCcceEEEEechhhh----------hHHHHHHHHHHHhcccc------ce
Confidence 222111 1111 1122221111 0112369999999988 55788999999998543 57
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGA 231 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~ 231 (441)
.|+..||..+.+++.+.+ |+. .+.|+....+.....++.++.+.....+.+ +..++..+.|--.+
T Consensus 161 rFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~ 226 (346)
T KOG0989|consen 161 RFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRR 226 (346)
T ss_pred EEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Confidence 888899999999999998 986 789999999999999998888888776655 67777777664333
No 103
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=1.7e-15 Score=142.63 Aligned_cols=188 Identities=23% Similarity=0.308 Sum_probs=137.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC----------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA---------------- 79 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~---------------- 79 (441)
.+|++++|++.+++.|..++... ..++++||+||+|+||||+|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 67899999999999999877541 23578999999999999999999987642
Q ss_pred --------cEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 80 --------HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 80 --------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
.++++++.+ ......++.+...+......++..|++|||+|.| +....+.|+..++
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L----------s~~A~NaLLK~LE 141 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHML----------SNSAFNALLKTLE 141 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhC----------CHHHHHHHHHHHh
Confidence 234444422 1123456666666655555566789999999987 3356788888888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
... +++.+|.+++.+..+.+.+.+ |+. .+.|.+++.++....+...+.+.....+.+ +..++..+.| +.
T Consensus 142 ePp------~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 142 EPA------PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred CCC------CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 743 256777778888889899998 885 799999999999999998887766554433 6666776654 56
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+++...++.+.
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 66656555544
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1.8e-15 Score=146.72 Aligned_cols=186 Identities=18% Similarity=0.249 Sum_probs=133.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++|+|++.+++.|.+.+... ..++.+||+||+|+|||++++.+++.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 67899999999999999887541 124568999999999999999999988653
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++++.. ......++.+.+........++..|+||||+|.| +....+.|++.++
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L----------s~~a~NALLKtLE 144 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE 144 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC----------CHHHHHHHHHHHH
Confidence 12222211 1123345555555544444566789999999988 4467889999998
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
.... ++.||.+|+.+..+.+.+++ |+ ..+.|.+++.++....+...+.......+ ..+..++..+.|- .
T Consensus 145 EPp~------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~ 214 (647)
T PRK07994 145 EPPE------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-M 214 (647)
T ss_pred cCCC------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 7432 56777778888899999998 87 48999999999999999888765554433 2356667666653 4
Q ss_pred HHHHHHHHH
Q 013506 231 ADLEALCRE 239 (441)
Q Consensus 231 ~~i~~l~~~ 239 (441)
++...+++.
T Consensus 215 R~Al~lldq 223 (647)
T PRK07994 215 RDALSLTDQ 223 (647)
T ss_pred HHHHHHHHH
Confidence 444444433
No 105
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=3e-15 Score=138.83 Aligned_cols=188 Identities=22% Similarity=0.301 Sum_probs=130.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|...+... ..++.++|+||+|+|||++|+.+++.+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 67899999999999999887541 234668999999999999999999988632
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+..........++..|++|||+|.+ +....+.++..++
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l----------~~~a~naLLk~lE 144 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML----------SRHSFNALLKTLE 144 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc----------CHHHHHHHHHHHh
Confidence 11111110 0122334555544433333345679999999987 2345667888877
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
.... ++.+|.+++.++.+.+.+.+ |+. .+.+++++.++..+++...+...+...+ ..+..++..+.| +.
T Consensus 145 e~~~------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 145 EPPQ------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred cCCC------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 6332 46667777778889889988 884 7999999999999999988777654333 336667777665 55
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+.+.++++.+.
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 106
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=3.4e-15 Score=141.78 Aligned_cols=195 Identities=22% Similarity=0.329 Sum_probs=138.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE-----------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----------- 84 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v----------- 84 (441)
..|++++|++.+++.|...+... ..++++||+||+||||||+|+.+++.++......
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 78899999999999999876431 2357899999999999999999999986421100
Q ss_pred -ccC--------ccccc--cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcC
Q 013506 85 -SPH--------SVHKA--HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (441)
Q Consensus 85 -~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (441)
+|. ++... ........++.+...+......++..|++|||+|.+ +......|+..++..
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L----------s~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHML----------SKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhc----------CHHHHHHHHHHHhhc
Confidence 000 00000 011223456666666665555567789999999987 235567778887753
Q ss_pred CCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHH
Q 013506 154 KPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGAD 232 (441)
Q Consensus 154 ~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~ 232 (441)
.+++++|.+|+.+..+++.+.+ |+. .+.|..++.++...+++..+.......+. .+..++..+.| +.++
T Consensus 156 ------p~~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~ 225 (507)
T PRK06645 156 ------PPHIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARD 225 (507)
T ss_pred ------CCCEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 2356777778888889999988 884 79999999999999999988876655443 36677777765 6666
Q ss_pred HHHHHHHHHH
Q 013506 233 LEALCREATM 242 (441)
Q Consensus 233 i~~l~~~a~~ 242 (441)
+.+.++.+..
T Consensus 226 al~~Ldkai~ 235 (507)
T PRK06645 226 AVSILDQAAS 235 (507)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 107
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.4e-15 Score=142.24 Aligned_cols=169 Identities=25% Similarity=0.326 Sum_probs=125.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc--------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-------- 90 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~-------- 90 (441)
.+=-|++++|+.+.+++.-.... +-..+.-++|+||||+|||+|++.+|+.++..|+.++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 45689999999999998653222 112346789999999999999999999999999998765433
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH---------hcCCCCCCCC
Q 013506 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM---------DSNKPSKTSV 160 (441)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~ 160 (441)
..|+|....++-+-+..+... ..++++||+|.|..+..+. + ...|+..+ |.+-...-..
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~-----NPv~LLDEIDKm~ss~rGD--P----aSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVK-----NPVFLLDEIDKMGSSFRGD--P----ASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCc-----CCeEEeechhhccCCCCCC--h----HHHHHhhcCHhhcCchhhccccCccch
Confidence 336677776666666555432 3499999999996554332 1 22333333 3333333345
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhc
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK 208 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~ 208 (441)
.+++||+|+|..+.+|.+++. |+. +|.++-|+.++..+|.+.++-
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 679999999999999999999 996 899999999999999987653
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=4.5e-15 Score=143.15 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=136.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~-------------- 81 (441)
..|++|+|++.+++.|..++... +.++.+||+||+|+|||++++.+++.++...
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 67899999999999999987541 2356799999999999999999999876431
Q ss_pred ----------EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 82 ----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 82 ----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++.. .......++.++..+......++..|+||||+|.| +....+.|++.++
T Consensus 81 ~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L----------s~~A~NALLKtLE 144 (709)
T PRK08691 81 QIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML----------SKSAFNAMLKTLE 144 (709)
T ss_pred HHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc----------CHHHHHHHHHHHH
Confidence 111111 11122345666655443333456789999999977 3356778888888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
.... ++.+|.+++.+..+.+.+++ |+. .+.|..++.++...++...+.......+.. +..++..+. .+.
T Consensus 145 EPp~------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-Gsl 214 (709)
T PRK08691 145 EPPE------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSM 214 (709)
T ss_pred hCCC------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCH
Confidence 6332 46777778888888888887 884 789999999999999999888776554433 667777665 456
Q ss_pred HHHHHHHHHHHH
Q 013506 231 ADLEALCREATM 242 (441)
Q Consensus 231 ~~i~~l~~~a~~ 242 (441)
+++..+++.+..
T Consensus 215 RdAlnLLDqaia 226 (709)
T PRK08691 215 RDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 109
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.67 E-value=7.3e-15 Score=136.52 Aligned_cols=232 Identities=19% Similarity=0.245 Sum_probs=144.5
Q ss_pred ccccc-ccchHHHHHHHHHHHHhhccCchHHHhc--CC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc
Q 013506 16 KAEEA-IGGNRAAVEALRELITFPLLYSSQAQKL--GL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (441)
Q Consensus 16 ~~~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~--~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~ 91 (441)
..|++ |+|++.+|+.|..++..++......... .. .+..++||+||||||||++|+.++..++.+++.+++..+..
T Consensus 67 ~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 67 AHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 55555 8999999999988775433221110000 11 24578999999999999999999999999999999877653
Q ss_pred -ccccchHH-HHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCC-------CCCC
Q 013506 92 -AHVGESEK-ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNK-------PSKT 158 (441)
Q Consensus 92 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~-------~~~~ 158 (441)
.+.+.... .+..++...........++|+||||+|.+.+..+.. ......+++.|+..++... +...
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 34444332 233333322111122357899999999997653211 1112357888999987531 1122
Q ss_pred CCCeEEEEEEcCCCC----------------------------------------------------ccCHHHhhCCccc
Q 013506 159 SVPHVVVVASTNRVD----------------------------------------------------AIDPALRRSGRFD 186 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~----------------------------------------------------~l~~~l~~~~r~~ 186 (441)
.....++|.|+|... .+.|.|.. |++
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCC
Confidence 223445555544410 02455655 888
Q ss_pred eEEEecCCCHHHHHHHHHH----Hhc-------cCCCCCccc---HHHHHHHC--CCCCHHHHHHHHHHHHHHHHHhcc
Q 013506 187 AEVEVTVPTAEERFEILKL----YTK-------KVPLDANVD---LEAIATSC--NGYVGADLEALCREATMSAVKRSS 249 (441)
Q Consensus 187 ~~i~~~~p~~~~~~~il~~----~~~-------~~~~~~~~~---~~~l~~~~--~g~~~~~i~~l~~~a~~~~~~~~~ 249 (441)
.++.|.+.+.+++.+|+.. .++ ........+ ++.+++.. ..+-.|.++.+++......+....
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 8999999999999999873 222 122222222 55666653 356678888888887777665544
No 110
>PLN03025 replication factor C subunit; Provisional
Probab=99.67 E-value=3.4e-15 Score=136.39 Aligned_cols=185 Identities=20% Similarity=0.188 Sum_probs=123.9
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCcc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSV 89 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~ 89 (441)
+.++++++|++++++.|..++.. ....+++|+||||||||++++++++.+.. .++.+++.+.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 36789999999999999887643 12347999999999999999999998732 2444554332
Q ss_pred ccccccchHHHHHHHHHHHHhh---hhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 90 HKAHVGESEKALREAFSQASSH---ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
.. ...++......... ...++..+++|||+|.+. ...+..|+..++.... .+.++
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt----------~~aq~aL~~~lE~~~~------~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT----------SGAQQALRRTMEIYSN------TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC----------HHHHHHHHHHHhcccC------CceEE
Confidence 11 11222222221111 112346799999999883 2456667777765322 34567
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHH
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCR 238 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~ 238 (441)
.+||....+.+.+++ |+. .+.|++|+.++....+...+.+.....+ ..+..++..+.| ..+.+-+.++
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 778888888899998 874 7999999999999999988877655433 336777776664 3344434343
No 111
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.67 E-value=5e-15 Score=143.27 Aligned_cols=217 Identities=24% Similarity=0.329 Sum_probs=141.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..|++++|++..++.+...+.. +.+.+++|+||||||||++|+++.... +.+++.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 6788999999999998866432 245789999999999999999997642 35678888
Q ss_pred cCcc--ccccccchHHHHHH----------HHHHH------HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHH
Q 013506 86 PHSV--HKAHVGESEKALRE----------AFSQA------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLF 147 (441)
Q Consensus 86 ~~~~--~~~~~~~~~~~~~~----------~~~~~------~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~ 147 (441)
+... ...... ...+.. .+... ..........+|||||++.| +...+..|+
T Consensus 129 ~~~~~~~~~~~~--~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L----------~~~~q~~LL 196 (531)
T TIGR02902 129 ATTARFDERGIA--DPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL----------HPVQMNKLL 196 (531)
T ss_pred cccccCCccccc--hhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC----------CHHHHHHHH
Confidence 7532 111000 000000 00000 00011123579999999988 446677777
Q ss_pred HHHhcCCCC-----------------------CCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHH
Q 013506 148 TLMDSNKPS-----------------------KTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (441)
Q Consensus 148 ~~~~~~~~~-----------------------~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~ 204 (441)
..++..... .......++.+|++.++.+++++++ |+. .+.+++++.+++.+|++
T Consensus 197 ~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~ 273 (531)
T TIGR02902 197 KVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAK 273 (531)
T ss_pred HHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHH
Confidence 777542110 0011224455667789999999998 885 78999999999999999
Q ss_pred HHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhh
Q 013506 205 LYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 205 ~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
..+.+.....+.+ ++.+...+ .+.+++.++++.+...+..+. ...++.+|+.....
T Consensus 274 ~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--------~~~It~~dI~~vl~ 330 (531)
T TIGR02902 274 NAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--------RKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--------CcEEcHHHHHHHhC
Confidence 9887766443322 45455443 378899999988876554432 23578888887765
No 112
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.67 E-value=1.8e-14 Score=121.03 Aligned_cols=204 Identities=22% Similarity=0.267 Sum_probs=138.5
Q ss_pred ccccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcE
Q 013506 5 GRIMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHL 81 (441)
Q Consensus 5 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~ 81 (441)
+.+.+-+....-.+++++|.|.+|+.|.+.....+. | .+.+++||+|+.|||||++++++..++. ..+
T Consensus 13 ~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 13 GYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred CcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 344555556667789999999999999998755322 1 4678999999999999999999998774 456
Q ss_pred EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCC
Q 013506 82 TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVP 161 (441)
Q Consensus 82 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (441)
+.|...++. .+..++...... ..+-|||+||+. +. ........|...+++.-.. ...
T Consensus 84 Iev~k~~L~---------~l~~l~~~l~~~---~~kFIlf~DDLs--Fe-------~~d~~yk~LKs~LeGgle~--~P~ 140 (249)
T PF05673_consen 84 IEVSKEDLG---------DLPELLDLLRDR---PYKFILFCDDLS--FE-------EGDTEYKALKSVLEGGLEA--RPD 140 (249)
T ss_pred EEECHHHhc---------cHHHHHHHHhcC---CCCEEEEecCCC--CC-------CCcHHHHHHHHHhcCcccc--CCC
Confidence 666554432 133333333322 236799999964 11 1223456777778775443 345
Q ss_pred eEEEEEEcCCCCccC---------------------HHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-c--
Q 013506 162 HVVVVASTNRVDAID---------------------PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-D-- 217 (441)
Q Consensus 162 ~~~vi~~~~~~~~l~---------------------~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~-- 217 (441)
++++.+|+|+...++ +.+--..||...+.|.+|+.++-.+|++.++.......+. .
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~ 220 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELR 220 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 899999998753221 2222123999999999999999999999999887766552 2
Q ss_pred --HHHHHHHCCCCCHHHHHHHHHHH
Q 013506 218 --LEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 218 --~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
....+..-.+.+++..++++...
T Consensus 221 ~~Al~wa~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 221 QEALQWALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 22334444667888777776543
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.67 E-value=8.9e-15 Score=135.32 Aligned_cols=188 Identities=22% Similarity=0.324 Sum_probs=127.6
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE---------------
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL--------------- 81 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~--------------- 81 (441)
.|++|+|++.+++.|.+++..+... ....+.+.++.+||+||+|+|||++|+.+++.+....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4689999999999999999764321 1122333567899999999999999999998875421
Q ss_pred --------EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcC
Q 013506 82 --------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN 153 (441)
Q Consensus 82 --------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 153 (441)
..+.... .......++.+++........++..|+||||+|.| +....+.|++.++..
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m----------~~~aanaLLk~LEep 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRL----------TERAANALLKAVEEP 144 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhc----------CHHHHHHHHHHhhcC
Confidence 1121111 11223446677766655554566789999999988 334567788888763
Q ss_pred CCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHH
Q 013506 154 KPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (441)
Q Consensus 154 ~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i 233 (441)
.. +.++|.+++.++.+.|.+++ |+. .+.|++|+.++..+++.... ... ......++..+.|..+..+
T Consensus 145 ~~------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 145 PP------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred CC------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 22 34455555558899999998 885 89999999999888776322 222 2335567777887766555
Q ss_pred HH
Q 013506 234 EA 235 (441)
Q Consensus 234 ~~ 235 (441)
.-
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 114
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=7.1e-15 Score=138.95 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=127.0
Q ss_pred cccccccchHHHHHH---HHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEA---LRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~ 92 (441)
.++++++|++..++. |.+++.. ....+++|+||||||||++++.+++.++..++.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 567999999999766 7777643 134589999999999999999999999999988876532
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc--C
Q 013506 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST--N 170 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~--~ 170 (441)
....++.++.........++..+|||||+|.+. ...++.|+..++.. .+++|+++ |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~----------~~~q~~LL~~le~~--------~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN----------KAQQDALLPHVEDG--------TITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC----------HHHHHHHHHHhhcC--------cEEEEEeCCCC
Confidence 123344455544333223467899999999872 24456667766642 35666554 3
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC--C-CC-cccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP--L-DA-NVDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~--~-~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+...+++++.+ |+ ..+.+++++.++...++...+.... . .. +..+..++..+.| ..+.+.++++.+.
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44578899998 88 5899999999999999988765421 1 11 2225666776644 5555556555543
No 115
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.2e-14 Score=138.82 Aligned_cols=187 Identities=20% Similarity=0.252 Sum_probs=129.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|...+... ..++.+||+||+|+|||++|+.+++.+...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 67899999999999999887541 234568999999999999999999987641
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+..........++..|+||||+|.+ +....+.|+..++
T Consensus 81 ~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l----------s~~a~naLLK~LE 144 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHML----------SKQSFNALLKTLE 144 (546)
T ss_pred HHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc----------cHHHHHHHHHHHh
Confidence 12222111 0112234455555444444456789999999987 3457788899988
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
.... .+.+|.+|+.+..+.+.+++ |+. .+.|.+++.++....+...+.......+.. +..++..+.| +.
T Consensus 145 epp~------~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 145 EPPE------YVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred cCCC------CceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7432 45666667778888888888 884 899999999999998888777665443322 5666666654 45
Q ss_pred HHHHHHHHHH
Q 013506 231 ADLEALCREA 240 (441)
Q Consensus 231 ~~i~~l~~~a 240 (441)
+++.++++.+
T Consensus 215 R~alnlLek~ 224 (546)
T PRK14957 215 RDALSLLDQA 224 (546)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 116
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=1.3e-14 Score=138.52 Aligned_cols=187 Identities=20% Similarity=0.260 Sum_probs=130.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+|||||||||+++++++.+...
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 56799999999999999988541 234667999999999999999999988531
Q ss_pred --------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 81 --------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 81 --------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
++.+++.. ......++.+..........+.+.+++|||+|.+ ....++.|+..++.
T Consensus 79 i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l----------s~~a~naLLk~LEe 142 (504)
T PRK14963 79 VRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM----------SKSAFNALLKTLEE 142 (504)
T ss_pred HhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc----------CHHHHHHHHHHHHh
Confidence 23333221 1112334444443333333456789999999876 33567778888776
Q ss_pred CCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHH
Q 013506 153 NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGA 231 (441)
Q Consensus 153 ~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~ 231 (441)
... ++++|.+++.+..+.+.+.+ |+. .+.|.+++.++....+...+.......+. .+..++..+.| ..+
T Consensus 143 p~~------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR 212 (504)
T PRK14963 143 PPE------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMR 212 (504)
T ss_pred CCC------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 322 46777778888889999988 875 79999999999999999888776655433 35666776664 345
Q ss_pred HHHHHHHHH
Q 013506 232 DLEALCREA 240 (441)
Q Consensus 232 ~i~~l~~~a 240 (441)
.+.+.++..
T Consensus 213 ~aln~Lekl 221 (504)
T PRK14963 213 DAESLLERL 221 (504)
T ss_pred HHHHHHHHH
Confidence 554444443
No 117
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.2e-14 Score=140.79 Aligned_cols=187 Identities=19% Similarity=0.253 Sum_probs=132.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++++|++.+++.|.+++... ..++.+||+||+|+|||++++.+++.+++.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 67899999999999999987541 234668999999999999999999988642
Q ss_pred --------------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHH
Q 013506 81 --------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQL 146 (441)
Q Consensus 81 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l 146 (441)
++++++.. ......++++..........++..|++|||+|.| +....+.|
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L----------s~~a~NaL 144 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML----------TNTAFNAM 144 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC----------CHHHHHHH
Confidence 11121111 1122345666665554444456789999999988 33557778
Q ss_pred HHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHC
Q 013506 147 FTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSC 225 (441)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~ 225 (441)
+..++... +++.+|.+|+.+..+.+.+++ |+. .+.|..++.++..+.++..+.......+.. +..++..+
T Consensus 145 LKtLEEPP------~~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 145 LKTLEEPP------EYLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHhcccCC------CCeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 88877632 246777777778888888888 874 899999999999999998877766554433 66777766
Q ss_pred CCCCHHHHHHHHHHH
Q 013506 226 NGYVGADLEALCREA 240 (441)
Q Consensus 226 ~g~~~~~i~~l~~~a 240 (441)
.| +.+++..++..+
T Consensus 216 ~G-slR~al~lLdq~ 229 (618)
T PRK14951 216 RG-SMRDALSLTDQA 229 (618)
T ss_pred CC-CHHHHHHHHHHH
Confidence 65 555555555443
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.7e-14 Score=139.23 Aligned_cols=186 Identities=14% Similarity=0.184 Sum_probs=129.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|||||++++.+++.+++.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 67899999999999999988541 234568999999999999999999987632
Q ss_pred -----------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
++++++.. ......++++..........+...|+||||+|.| .....+.|+..
T Consensus 78 ~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L----------t~~A~NALLK~ 141 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV----------TTAGFNALLKI 141 (584)
T ss_pred HhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC----------CHHHHHHHHHH
Confidence 11121111 0112334444444443333455779999999988 33577888888
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGY 228 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~ 228 (441)
++.... ++++|.+|+.+..+.+.+++ |+. .+.|..++.++..+.+..++.......+.. +..++.... .
T Consensus 142 LEEpp~------~~~fIL~tte~~kll~TI~S--Rc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-G 211 (584)
T PRK14952 142 VEEPPE------HLIFIFATTEPEKVLPTIRS--RTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG-G 211 (584)
T ss_pred HhcCCC------CeEEEEEeCChHhhHHHHHH--hce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 887432 56777777888899999988 864 899999999999999988887766544333 444555444 4
Q ss_pred CHHHHHHHHHH
Q 013506 229 VGADLEALCRE 239 (441)
Q Consensus 229 ~~~~i~~l~~~ 239 (441)
+.+++.++++.
T Consensus 212 dlR~aln~Ldq 222 (584)
T PRK14952 212 SPRDTLSVLDQ 222 (584)
T ss_pred CHHHHHHHHHH
Confidence 45555455444
No 119
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-15 Score=141.42 Aligned_cols=169 Identities=25% Similarity=0.386 Sum_probs=124.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc--------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-------- 90 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~-------- 90 (441)
++=-|++++|+.+-+++.-..+. +-..+.-+.|+||||+|||++++.||+.+++.|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56789999999999988653222 334567899999999999999999999999999998765443
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH---------hcCCCCCCCC
Q 013506 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM---------DSNKPSKTSV 160 (441)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~ 160 (441)
..|+|....++-+.++...- . ..+++|||+|.+.... .+.+. ..|+..+ |.+-......
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t----~-NPliLiDEvDKlG~g~--qGDPa----sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKT----E-NPLILIDEVDKLGSGH--QGDPA----SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCC----C-CceEEeehhhhhCCCC--CCChH----HHHHHhcChhhccchhhhccccccch
Confidence 23566666666555554432 2 3489999999996322 12221 2333333 3333333345
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhc
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK 208 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~ 208 (441)
.+++||+|+|..+.++++++. |+. +|+++-|..++..+|.+.++-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 679999999999999999999 996 899999999999999987754
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=1.8e-14 Score=139.94 Aligned_cols=187 Identities=21% Similarity=0.283 Sum_probs=133.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|||||++|+.+++.+++.
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 67899999999999999988541 245678999999999999999999987532
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+...+......++..|++|||+|.| .....+.|+..++
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L----------t~~a~naLLKtLE 144 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML----------STGAFNALLKTLE 144 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHHHhc
Confidence 22222211 1223445666666554444556789999999988 3356778888877
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... +++++|.+|+.+..+++.+++ |+. .+.|.+|+.++....++..+.......+. .+..++....| +.
T Consensus 145 epp------~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 145 EPP------AHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred CCC------CCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 532 256777777788899999988 885 78999999999999999888776654443 35666766665 55
Q ss_pred HHHHHHHHHH
Q 013506 231 ADLEALCREA 240 (441)
Q Consensus 231 ~~i~~l~~~a 240 (441)
+++...++.+
T Consensus 215 R~al~~Ldq~ 224 (559)
T PRK05563 215 RDALSILDQA 224 (559)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 121
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.3e-14 Score=139.87 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=131.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+++.++..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 67899999999999999987541 234668999999999999999999998642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+...+......++..|+||||+|.+ +....+.|+..++
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l----------s~~a~naLLK~LE 144 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML----------SKSAFNAMLKTLE 144 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC----------CHHHHHHHHHHHh
Confidence 11121110 1223345666665554444556789999999987 3356778888887
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... +++.+|.+|+.+..+.+.+++ |+. .+.|..++.++....+...+.......+. .+..++..+.| +.
T Consensus 145 epp------~~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 145 EPP------EHVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred CCC------CCEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 743 246777777777888877888 874 89999999999999888877665544332 25666666654 45
Q ss_pred HHHHHHHHHH
Q 013506 231 ADLEALCREA 240 (441)
Q Consensus 231 ~~i~~l~~~a 240 (441)
+++.++++.+
T Consensus 215 r~al~lldqa 224 (527)
T PRK14969 215 RDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=2.1e-14 Score=143.99 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=132.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++|+|++.+++.|..++... +..+.+||+||+|||||++++.+++.+++.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 57899999999999999988541 234568999999999999999999998642
Q ss_pred -----------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 81 -----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 81 -----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
+++++... ......++++.+........++..|+||||+|.| +....+.|++.
T Consensus 80 ~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l----------t~~a~NaLLK~ 143 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV----------TPQGFNALLKI 143 (824)
T ss_pred HHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc----------CHHHHHHHHHH
Confidence 11111110 0112334444444443344456789999999988 44677889999
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGY 228 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~ 228 (441)
++.... +++||.+|+.++.|.+.+++ |+. .+.|..++.+++.+++...+....+..+.. +..++....|
T Consensus 144 LEEpP~------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 144 VEEPPE------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HhCCCC------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 987433 56777777888888888888 874 899999999999999998887666554333 4555665554
Q ss_pred CHHHHHHHHHHHH
Q 013506 229 VGADLEALCREAT 241 (441)
Q Consensus 229 ~~~~i~~l~~~a~ 241 (441)
+.+++..++++..
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 5565555555443
No 123
>PRK04195 replication factor C large subunit; Provisional
Probab=99.63 E-value=1.9e-14 Score=138.71 Aligned_cols=181 Identities=26% Similarity=0.381 Sum_probs=126.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|++.+++.|..++.... .| .++.++||+||||||||++|+++++.++.+++.+++.+...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~---- 77 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT---- 77 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc----
Confidence 678999999999999999985421 11 23689999999999999999999999999999998865321
Q ss_pred chHHHHHHHHHHHHhh-hhcC-CCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC
Q 013506 96 ESEKALREAFSQASSH-ALSG-KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~~-~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~ 173 (441)
...+.......... ...+ ++.+|+|||+|.+.... +......++..++.. +..+|.++|.+.
T Consensus 78 --~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d~~~~~aL~~~l~~~--------~~~iIli~n~~~ 141 (482)
T PRK04195 78 --ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------DRGGARAILELIKKA--------KQPIILTANDPY 141 (482)
T ss_pred --HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc------chhHHHHHHHHHHcC--------CCCEEEeccCcc
Confidence 11233332222211 1122 57899999999885422 223456666666632 234566778888
Q ss_pred ccCH-HHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 013506 174 AIDP-ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGY 228 (441)
Q Consensus 174 ~l~~-~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~ 228 (441)
.+.+ .+++ ++ ..+.|++|+..++..++...+.......+ ..+..++..+.|-
T Consensus 142 ~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 142 DPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGD 195 (482)
T ss_pred ccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7776 5554 55 48999999999999999988876665433 2377777777653
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=3.5e-14 Score=135.76 Aligned_cols=186 Identities=20% Similarity=0.235 Sum_probs=130.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|.+++... ..++.+||+||+|+|||++|+.+|+.+.+.
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 67899999999999999887431 234679999999999999999999987531
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+..........++..|++|||+|.| .......|+..++
T Consensus 81 ~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~L----------t~~A~NaLLKtLE 144 (605)
T PRK05896 81 SINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHML----------STSAWNALLKTLE 144 (605)
T ss_pred HHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhC----------CHHHHHHHHHHHH
Confidence 12222211 0112335555555444444445679999999987 2345678888888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
.... .+++|.+|+.+..+.+.+++ |+. .+.|++++.++....+...+.......+ ..+..++..+.| +.
T Consensus 145 EPp~------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 145 EPPK------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred hCCC------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 6432 46777778888899999988 886 7999999999999999988776554332 235666766665 45
Q ss_pred HHHHHHHHH
Q 013506 231 ADLEALCRE 239 (441)
Q Consensus 231 ~~i~~l~~~ 239 (441)
+++..+++.
T Consensus 215 R~AlnlLek 223 (605)
T PRK05896 215 RDGLSILDQ 223 (605)
T ss_pred HHHHHHHHH
Confidence 555454444
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=4.3e-14 Score=137.87 Aligned_cols=193 Identities=20% Similarity=0.282 Sum_probs=134.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE---ccC-----
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI---SPH----- 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v---~~~----- 87 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+|+.+.+.-... .|.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 56799999999999999988541 2346789999999999999999999886431100 000
Q ss_pred -----ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 013506 88 -----SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (441)
Q Consensus 88 -----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (441)
++. ..........++.+...+......++..|++|||+|.| .......|+..++...
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~L----------T~~A~NALLKtLEEPP------ 146 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHML----------SKSAFNALLKTLEEPP------ 146 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhC----------CHHHHHHHHHHhhcCC------
Confidence 000 00000123446666666665555567789999999987 2356778888888642
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHH
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCRE 239 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~ 239 (441)
+.+++|.+|+.++.+.+.+++ |+. .+.|.+++.++...++...+.+.+...+.. +..++..+.| +.+++..+++.
T Consensus 147 ~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 147 KHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred CceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 256777778888899999988 885 899999999999999988777665544332 5666776664 44555454444
Q ss_pred H
Q 013506 240 A 240 (441)
Q Consensus 240 a 240 (441)
.
T Consensus 223 l 223 (725)
T PRK07133 223 V 223 (725)
T ss_pred H
Confidence 3
No 126
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.3e-14 Score=136.69 Aligned_cols=176 Identities=16% Similarity=0.182 Sum_probs=123.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++|+|++.+++.|.+++... +..+.+||+||+|+|||++|+.+++.+...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 67899999999999999988541 124689999999999999999999988642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++++.. ......++.+.+........++..|+||||+|.| ....++.|+..++
T Consensus 81 ~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L----------t~~a~naLLk~LE 144 (624)
T PRK14959 81 KVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML----------TREAFNALLKTLE 144 (624)
T ss_pred HHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC----------CHHHHHHHHHHhh
Confidence 22232211 0112233333333333333455689999999988 3356788888887
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCC
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGY 228 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~ 228 (441)
... +.+++|.+|+.+..+.+.+++ |+. .+.|+.++.++...++...+.......+. .+..++..+.|-
T Consensus 145 EP~------~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 145 EPP------ARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred ccC------CCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 632 247777888888888888888 875 78999999999999998877766543332 356666666653
No 127
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.62 E-value=2.2e-14 Score=124.90 Aligned_cols=212 Identities=21% Similarity=0.330 Sum_probs=133.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---~~~v~~~~~~~~ 92 (441)
++|++.+|++....+ .-.+...+ ++ ..-..++||||||||||++|+.++.....+ |+++++..
T Consensus 135 ktL~dyvGQ~hlv~q-~gllrs~i------eq---~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~---- 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQ-DGLLRSLI------EQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN---- 200 (554)
T ss_pred chHHHhcchhhhcCc-chHHHHHH------Hc---CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc----
Confidence 678899999888665 22221111 11 122469999999999999999999877655 56665533
Q ss_pred cccchHHHHHHHHHHHHhhhh-cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc--
Q 013506 93 HVGESEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST-- 169 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~-- 169 (441)
.....++.+|+++..... ..+..||||||+|.. ....++.++...+.. .+++|++|
T Consensus 201 ---a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF----------NksQQD~fLP~VE~G--------~I~lIGATTE 259 (554)
T KOG2028|consen 201 ---AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF----------NKSQQDTFLPHVENG--------DITLIGATTE 259 (554)
T ss_pred ---cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh----------hhhhhhcccceeccC--------ceEEEecccC
Confidence 234457777777654433 355789999999976 223345555555432 57888876
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC--------CCCC------cccHHHHHHHCCCCCHHHHHH
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV--------PLDA------NVDLEAIATSCNGYVGADLEA 235 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~--------~~~~------~~~~~~l~~~~~g~~~~~i~~ 235 (441)
|+...++.++.+ |+. ++.+.....+....|+..-...+ ++.. +..++.++..+.|-....+..
T Consensus 260 NPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~ 336 (554)
T KOG2028|consen 260 NPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA 336 (554)
T ss_pred CCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH
Confidence 555688999999 884 78888889999988887633211 1111 112677888888766555544
Q ss_pred HHHHHHHHHHHhcccccccccceeeeHhhHHhhhh
Q 013506 236 LCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 236 l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
+ +.+......+.. +.....++.+|+...+.
T Consensus 337 L-ems~~m~~tr~g----~~~~~~lSidDvke~lq 366 (554)
T KOG2028|consen 337 L-EMSLSMFCTRSG----QSSRVLLSIDDVKEGLQ 366 (554)
T ss_pred H-HHHHHHHHhhcC----CcccceecHHHHHHHHh
Confidence 3 333223333322 11344567777766554
No 128
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=3.3e-14 Score=138.80 Aligned_cols=184 Identities=16% Similarity=0.226 Sum_probs=130.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++++.+++.++..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 57799999999999999987541 235678999999999999999999988642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++++++.. ......++.+..........++..|++|||+|.| +....+.|+..++
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L----------t~~a~naLLk~LE 144 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML----------STNAFNALLKTLE 144 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC----------CHHHHHHHHHHHH
Confidence 12222211 1122345566655554444456689999999987 3356788899988
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... +++++|.+|+.+..+.+.+++ |+. .+.|..++.++....+...+.+.....+. .+..++..+.| +.
T Consensus 145 epp------~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 145 EPP------PHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred cCC------CCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 743 257777788888999999998 885 79999999999998888877766554332 35566666654 34
Q ss_pred HHHHHHH
Q 013506 231 ADLEALC 237 (441)
Q Consensus 231 ~~i~~l~ 237 (441)
+++..++
T Consensus 215 r~al~~L 221 (576)
T PRK14965 215 RDSLSTL 221 (576)
T ss_pred HHHHHHH
Confidence 4443333
No 129
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.61 E-value=6.3e-14 Score=129.37 Aligned_cols=233 Identities=17% Similarity=0.252 Sum_probs=144.0
Q ss_pred ccccc-ccchHHHHHHHHHHHHhhccCchHH-Hh---cCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 16 KAEEA-IGGNRAAVEALRELITFPLLYSSQA-QK---LGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 16 ~~~~~-i~G~~~~~~~l~~~~~~~~~~~~~~-~~---~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
..|++ ++|++++++.+..++...+...... .. .++ ....++||+||||||||++|+.++..++.++..+++..+
T Consensus 73 ~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L 152 (413)
T TIGR00382 73 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL 152 (413)
T ss_pred HHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc
Confidence 44444 7999999999998875433221110 00 001 124689999999999999999999999999988887765
Q ss_pred cc-ccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCCC-------C
Q 013506 90 HK-AHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKP-------S 156 (441)
Q Consensus 90 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~-------~ 156 (441)
.. .+.+.. ...+...+...........+++|||||+|.+.+..+.. .-....+++.|+..+++... .
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr 232 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGR 232 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCc
Confidence 42 344443 23333333322211222357899999999987643211 11123577888888865321 2
Q ss_pred CCCCCeEEEEEEcCCCC--------------------------------------------------ccCHHHhhCCccc
Q 013506 157 KTSVPHVVVVASTNRVD--------------------------------------------------AIDPALRRSGRFD 186 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~~--------------------------------------------------~l~~~l~~~~r~~ 186 (441)
.....++++|.|+|... .+.|+|.. |++
T Consensus 233 ~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld 310 (413)
T TIGR00382 233 KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLP 310 (413)
T ss_pred cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCC
Confidence 22334567777766510 02355555 888
Q ss_pred eEEEecCCCHHHHHHHHHHH----hccC-------CCCCcc---cHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 187 AEVEVTVPTAEERFEILKLY----TKKV-------PLDANV---DLEAIATSC--NGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 187 ~~i~~~~p~~~~~~~il~~~----~~~~-------~~~~~~---~~~~l~~~~--~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
.++.|.+.+.+++.+|+... .+++ ...... -++.+++.. ..+.+|.++.+++......+-....
T Consensus 311 ~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~ 390 (413)
T TIGR00382 311 VIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPS 390 (413)
T ss_pred eEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCC
Confidence 88999999999999998652 2211 222111 255666653 3467788888888877766655543
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.2e-14 Score=132.74 Aligned_cols=188 Identities=22% Similarity=0.326 Sum_probs=129.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+++.++..
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 67899999999999999988541 234568999999999999999999988631
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++. .......++.+...+......++..|++|||+|.+ +....+.|+..++
T Consensus 81 ~i~~g~~~d~~eidaa------s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L----------t~~a~naLLk~LE 144 (486)
T PRK14953 81 EIDKGSFPDLIEIDAA------SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML----------TKEAFNALLKTLE 144 (486)
T ss_pred HHhcCCCCcEEEEeCc------cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc----------CHHHHHHHHHHHh
Confidence 1111110 01112234455555544444556789999999977 2345677788877
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
... +.+++|.+++.+..+.+.+.+ |+. .+.|++++.+++..++..++.......+.+ +..++..+.| +.
T Consensus 145 epp------~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 145 EPP------PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred cCC------CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 632 245666667777788888888 775 799999999999999998888766554333 5666666554 45
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+++...++.+.
T Consensus 215 r~al~~Ldkl~ 225 (486)
T PRK14953 215 RDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHH
Confidence 66555555543
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8e-14 Score=134.86 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=130.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+++.+...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 56799999999999999988541 235679999999999999999999988642
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.+..........++..|++|||+|.+ +....+.|+..++
T Consensus 81 ~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L----------s~~a~naLLK~LE 144 (563)
T PRK06647 81 SIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML----------SNSAFNALLKTIE 144 (563)
T ss_pred HHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc----------CHHHHHHHHHhhc
Confidence 11111110 1122345555544444444556789999999987 3356777888877
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~ 230 (441)
... +.+++|.+++.+..+.+.+++ |+. .+.|.+++.+++.+++...+.......+.. +..++....| +.
T Consensus 145 epp------~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 145 EPP------PYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred cCC------CCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 532 257777777778889999998 886 789999999999999988876655443333 5556666554 55
Q ss_pred HHHHHHHHHH
Q 013506 231 ADLEALCREA 240 (441)
Q Consensus 231 ~~i~~l~~~a 240 (441)
+++..+++..
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.60 E-value=4e-14 Score=142.13 Aligned_cols=229 Identities=20% Similarity=0.222 Sum_probs=144.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------- 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~------- 91 (441)
++..|++++|+.+.+++...... +-..+..++|+||||+|||++++.+++.++.+++.++......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 34999999999999988642221 1124568999999999999999999999999998887554321
Q ss_pred --ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcC---------CCCCCCC
Q 013506 92 --AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN---------KPSKTSV 160 (441)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~ 160 (441)
.+.+.....+...+..+. ....|++|||+|.+.+...+ +....|+..++.. -......
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~-----~~~~villDEidk~~~~~~g------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVG-----VKNPLFLLDEIDKMSSDMRG------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcC-----CCCCEEEEEChhhcccccCC------CHHHHHHHHhccccEEEEecccccccccC
Confidence 122222233333333221 12348999999988653221 1245666666531 1111233
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc-----CCCC---Cccc---HHHHHHH-CCCC
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-----VPLD---ANVD---LEAIATS-CNGY 228 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~-----~~~~---~~~~---~~~l~~~-~~g~ 228 (441)
.++++|+|+|.. .+++++++ |+. ++.++.++.++..+|.+.++.. .... ...+ +..++.. +..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 578999999987 59999999 995 8999999999999999877642 1111 1111 3444432 3345
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhh
Q 013506 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
..|.++..++..+.....+..... ......++.+++...+.
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~-~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDK-SLKHIEINGDNLHDYLG 580 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcC-CCceeeecHHHHHHHhC
Confidence 667777777776655554432111 11234566676665544
No 133
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.5e-13 Score=130.80 Aligned_cols=189 Identities=19% Similarity=0.207 Sum_probs=132.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++++|++.+++.|...+... ..++.+||+||+|+|||++++.+++.+...
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 57799999999999999987541 234667999999999999999999987421
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++............+...|++|||+|.| +...++.|+..++
T Consensus 79 ~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L----------t~~A~NALLK~LE 142 (535)
T PRK08451 79 SALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML----------TKEAFNALLKTLE 142 (535)
T ss_pred HHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC----------CHHHHHHHHHHHh
Confidence 22222111 0112345555444332322345679999999987 4467888899888
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
.... ++.+|.+++.+..+.+.+.+ |+. .+.|.+++.++..+.+...+...+...+ ..+..++....| +.
T Consensus 143 Epp~------~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 143 EPPS------YVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred hcCC------ceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 7432 45666667777889999998 864 8999999999999999888877665433 236666766664 66
Q ss_pred HHHHHHHHHHHH
Q 013506 231 ADLEALCREATM 242 (441)
Q Consensus 231 ~~i~~l~~~a~~ 242 (441)
+++..+++.+..
T Consensus 213 R~alnlLdqai~ 224 (535)
T PRK08451 213 RDTLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 134
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=1.3e-13 Score=134.04 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=133.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc----------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS---------- 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~---------- 85 (441)
..|++++|++.+++.|..++... +.++.+||+||+|+|||++|+.+++.+++.....+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 67899999999999999987541 24578999999999999999999998864321111
Q ss_pred ---cC--------cccccc--ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 86 ---PH--------SVHKAH--VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 86 ---~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
|. ++.... .......++++...+......+...|+||||+|.| +....+.|+..++.
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~L----------s~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHML----------STAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhC----------CHHHHHHHHHHHHh
Confidence 00 000000 01113356666666655555566789999999988 33567888888887
Q ss_pred CCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHH
Q 013506 153 NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGA 231 (441)
Q Consensus 153 ~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~ 231 (441)
... ++.+|.+++....+.+.+++ |+. .+.|..++.++...++...+.......+. .+..++..+.| +.+
T Consensus 159 Pp~------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 159 PPP------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred CCC------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 432 46666677777778888888 885 79999999999999999888766655443 35555666554 455
Q ss_pred HHHHHHHHH
Q 013506 232 DLEALCREA 240 (441)
Q Consensus 232 ~i~~l~~~a 240 (441)
++...++.+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555544443
No 135
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.59 E-value=1.3e-13 Score=128.96 Aligned_cols=188 Identities=24% Similarity=0.315 Sum_probs=130.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..+++++|++++++.|.+.+... ..++.+||+||||+|||++++.+++.+..+
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 45689999999999999987541 235679999999999999999999887532
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.+++.. ......++.++..+......+...+++|||+|.+. ......++..++
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~----------~~~~~~Ll~~le 142 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS----------KSAFNALLKTLE 142 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC----------HHHHHHHHHHHh
Confidence 22222210 11223455666655544444566799999998772 245667777776
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
... +++++|.+++.+..+.+.+.+ |+. .+.+++|+.+++..++...+.......+ ..+..++..+.| +.
T Consensus 143 ~~~------~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 143 EPP------EHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred CCc------cceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 532 246667777777788888888 874 7899999999999999988877665433 335666776665 45
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+.+.+.++...
T Consensus 213 ~~a~~~lekl~ 223 (355)
T TIGR02397 213 RDALSLLDQLI 223 (355)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 136
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.3e-14 Score=134.47 Aligned_cols=194 Identities=21% Similarity=0.281 Sum_probs=144.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE---E-----EccC
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT---V-----ISPH 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~---~-----v~~~ 87 (441)
..|++++|++.++..|..++..- +-.+..+|+||-||||||++|.+|+.+++.-- . ..|.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 67899999999999999988542 23467999999999999999999999875420 0 0011
Q ss_pred ccccc----------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 013506 88 SVHKA----------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (441)
Q Consensus 88 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (441)
.+... ........++.+.+........++..|.+|||+|+| +......|+..++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML----------S~~afNALLKTLEE----- 145 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML----------SKQAFNALLKTLEE----- 145 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh----------hHHHHHHHhccccc-----
Confidence 11100 011223467777888777777788899999999988 55677888888876
Q ss_pred CCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHH
Q 013506 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEAL 236 (441)
Q Consensus 158 ~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l 236 (441)
..+++.+|.+|..+..+++-+++ |+. .+.|...+.++....+..++.+.....+.+ +..++...+| +.||...+
T Consensus 146 -PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 -PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred -CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 34479999999999999999999 886 799999999999999999998887776555 5555665554 45665555
Q ss_pred HHHHH
Q 013506 237 CREAT 241 (441)
Q Consensus 237 ~~~a~ 241 (441)
+..+.
T Consensus 221 LDq~i 225 (515)
T COG2812 221 LDQAI 225 (515)
T ss_pred HHHHH
Confidence 55443
No 137
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.2e-13 Score=129.72 Aligned_cols=193 Identities=16% Similarity=0.233 Sum_probs=126.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----------c
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----------S 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v----------~ 85 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+|+.+...-..- .
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 56799999999999999887541 2356799999999999999999999986521000 0
Q ss_pred cC--------------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 86 PH--------------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 86 ~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
|. ++. ..........++.+..........+...++||||+|.+. ....+.|+..
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~----------~~~~~~LLk~ 150 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS----------IAAFNAFLKT 150 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC----------HHHHHHHHHH
Confidence 00 000 000001123455554444433444556799999999872 2456677777
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGY 228 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~ 228 (441)
++.... .+++|.+++.+..+.+.+.+ |+. .+.|.+++.++..+.+...+.......+ ..+..++..+.|
T Consensus 151 LEep~~------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g- 220 (397)
T PRK14955 151 LEEPPP------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG- 220 (397)
T ss_pred HhcCCC------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 775322 45666666667788888887 775 7999999999999998888776554333 236666766664
Q ss_pred CHHHHHHHHHHH
Q 013506 229 VGADLEALCREA 240 (441)
Q Consensus 229 ~~~~i~~l~~~a 240 (441)
+.+.+...++..
T Consensus 221 ~lr~a~~~L~kl 232 (397)
T PRK14955 221 SMRDAQSILDQV 232 (397)
T ss_pred CHHHHHHHHHHH
Confidence 455555554443
No 138
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.58 E-value=4.7e-14 Score=115.32 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=126.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~~ 90 (441)
..+.+|+|+|+.++.|+.+... ..-.++++.|||||||||-+.++|+++-. .++++++++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 5689999999999999987643 13358999999999999999999998732 34666665532
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
.. +..+.-...|.+..-....++..|+++||+|++ ....++.+.+.++-+.. .+.+..+||
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM----------T~gAQQAlRRtMEiyS~------ttRFalaCN 151 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM----------TAGAQQALRRTMEIYSN------TTRFALACN 151 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchh----------hhHHHHHHHHHHHHHcc------cchhhhhhc
Confidence 21 222333445666555555566789999999988 33567777777776544 367888899
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHH
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEAL 236 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l 236 (441)
..+.+-+.+.+ |+. .+.+...+..+...-+....+..... .+..++.+..-.+|-....+.++
T Consensus 152 ~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnL 215 (333)
T KOG0991|consen 152 QSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNL 215 (333)
T ss_pred chhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHH
Confidence 99999888988 875 56666666666555444444443333 23346666666666444444443
No 139
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.8e-13 Score=126.77 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=128.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc----c-
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV----H- 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~----~- 90 (441)
..+++++|++.+++.+.+.+... ..+++++|+||||+|||++++.+++.+..+........+ .
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 57899999999999999988541 235689999999999999999999987542211100000 0
Q ss_pred -cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc
Q 013506 91 -KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (441)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~ 169 (441)
..........+..++..+......++..+++|||++.+. ......++..++... ..+++|.++
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~----------~~~~~~ll~~le~~~------~~~~~Il~~ 145 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS----------SAAFNAFLKTLEEPP------AHAIFILAT 145 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC----------HHHHHHHHHHHhCCC------CceEEEEEe
Confidence 000111224455666655444444567899999998772 234566777666522 135666667
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+....+.+.+.+ |+. .+.+++|+.++...++...+.+.....+ ..+..++..+.| +.+.+.+.++...
T Consensus 146 ~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 146 TEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred CCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 777888888888 774 7899999999999999888777665433 336666766654 5555555555443
No 140
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.57 E-value=1.8e-13 Score=124.43 Aligned_cols=187 Identities=24% Similarity=0.351 Sum_probs=126.8
Q ss_pred ccccc-ccchHHHHHHHHHHHHhhccCchHHHhcCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-c
Q 013506 16 KAEEA-IGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-A 92 (441)
Q Consensus 16 ~~~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~-~ 92 (441)
..|+. ++|++++|+.+..++............+.. ..+.+++|+||||||||++++.++..++.+++.+++..+.. .
T Consensus 11 ~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~G 90 (443)
T PRK05201 11 SELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90 (443)
T ss_pred HHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCC
Confidence 34444 999999999999988543222111111110 12589999999999999999999999999999999877664 4
Q ss_pred ccc-chHHHHHHHHHHHH--------------------------------------------------------------
Q 013506 93 HVG-ESEKALREAFSQAS-------------------------------------------------------------- 109 (441)
Q Consensus 93 ~~~-~~~~~~~~~~~~~~-------------------------------------------------------------- 109 (441)
+.+ ..+..++.++..+.
T Consensus 91 yvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd 170 (443)
T PRK05201 91 YVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDD 170 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCC
Confidence 555 33334444443330
Q ss_pred --------h----------------------------------------------------------------hhhcCCC
Q 013506 110 --------S----------------------------------------------------------------HALSGKP 117 (441)
Q Consensus 110 --------~----------------------------------------------------------------~~~~~~~ 117 (441)
. .....+.
T Consensus 171 ~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~ 250 (443)
T PRK05201 171 KEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQN 250 (443)
T ss_pred cEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence 0 0001245
Q ss_pred eEEEEccccccccCCCC--CchhhHHHHHHHHHHHhcCCCCC----CCCCeEEEEEEc----CCCCccCHHHhhCCccce
Q 013506 118 SVVFIDEIDALCPRRDH--RREQDVRIASQLFTLMDSNKPSK----TSVPHVVVVAST----NRVDAIDPALRRSGRFDA 187 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~vi~~~----~~~~~l~~~l~~~~r~~~ 187 (441)
+|+||||+|.++...+. ..-....+++.|+..+++..... .+..+++||++. ..|..|-|.|.- ||..
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi 328 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPI 328 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccce
Confidence 69999999999876532 12223457888999888743221 122467888764 345667788876 9999
Q ss_pred EEEecCCCHHHHHHHHH
Q 013506 188 EVEVTVPTAEERFEILK 204 (441)
Q Consensus 188 ~i~~~~p~~~~~~~il~ 204 (441)
++.+.+++.+++.+|+.
T Consensus 329 ~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 329 RVELDALTEEDFVRILT 345 (443)
T ss_pred EEECCCCCHHHHHHHhc
Confidence 99999999999999984
No 141
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=1.4e-13 Score=136.55 Aligned_cols=184 Identities=22% Similarity=0.313 Sum_probs=121.3
Q ss_pred cccccccchHHHHH---HHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVE---ALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~ 92 (441)
.+|++++|++.... .|.+++.. ....+++|+|||||||||+++.+++..+..++.+++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~-- 89 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG-- 89 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh--
Confidence 77899999999885 45555432 2335899999999999999999999998888777764211
Q ss_pred cccchHHHHHHHHHHHHhh-hhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC-
Q 013506 93 HVGESEKALREAFSQASSH-ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN- 170 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~- 170 (441)
...+...+...... ...++..+|||||+|.+. ...++.|+..++.. .+++|++++
T Consensus 90 -----i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln----------~~qQdaLL~~lE~g--------~IiLI~aTTe 146 (725)
T PRK13341 90 -----VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN----------KAQQDALLPWVENG--------TITLIGATTE 146 (725)
T ss_pred -----hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC----------HHHHHHHHHHhcCc--------eEEEEEecCC
Confidence 11223333322111 112346799999999872 23455666665532 466666553
Q ss_pred -CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc-------CCCCC-cccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 171 -RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-------VPLDA-NVDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 171 -~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~-------~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+...+++++.+ |+. .+.+++++.+++..+++..+.. ..... +..+..++..+. .+.+.+.++++.+.
T Consensus 147 np~~~l~~aL~S--R~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~-GD~R~lln~Le~a~ 222 (725)
T PRK13341 147 NPYFEVNKALVS--RSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN-GDARSLLNALELAV 222 (725)
T ss_pred ChHhhhhhHhhc--ccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 33468889988 764 7999999999999999987762 22222 223667777664 45666666666554
No 142
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.3e-14 Score=130.89 Aligned_cols=148 Identities=26% Similarity=0.302 Sum_probs=116.4
Q ss_pred ccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
.++.| .+++.+.--.++|+.+.+-+..-+.....+.+.|.+=.++.||+|||||||||++.++|..++++++-++.++.
T Consensus 193 ~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v 271 (457)
T KOG0743|consen 193 GFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV 271 (457)
T ss_pred CCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc
Confidence 34444 56777777788899988888878888888999999889999999999999999999999999999999998774
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCC---CCcc-hhhHHHHHHHHHhcCCCC---CCeEEEE
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSS---TSIT-VGERLLSTLLTEMDGLEQ---AKVIIYP 433 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~---~~~~-~~~~~~~~ll~~l~~~~~---~~~v~~~ 433 (441)
+...+ ++.++..+ .+.+||+|.+||+.+-.|+.... +..+ .+.--++.||+++||+-+ ..+|||.
T Consensus 272 -----~~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivF 343 (457)
T KOG0743|consen 272 -----KLDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVF 343 (457)
T ss_pred -----cCcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEE
Confidence 33444 88888875 45679999999998876654332 1111 122349999999999876 3589999
Q ss_pred eeee
Q 013506 434 ISFI 437 (441)
Q Consensus 434 ~~~~ 437 (441)
+||-
T Consensus 344 TTNh 347 (457)
T KOG0743|consen 344 TTNH 347 (457)
T ss_pred ecCC
Confidence 9984
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.1e-13 Score=128.11 Aligned_cols=186 Identities=21% Similarity=0.275 Sum_probs=127.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
.+|++++|++.+++.|..++... ..++.+||+||+|+|||++|+.+++.+...
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 56799999999999999988541 235679999999999999999999987532
Q ss_pred ----------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH
Q 013506 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (441)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~ 150 (441)
++.+++.. ......++.+.+........+...|++|||+|.+. ....+.|+..+
T Consensus 82 ~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt----------~~~~n~LLk~l 145 (451)
T PRK06305 82 KEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT----------KEAFNSLLKTL 145 (451)
T ss_pred HHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC----------HHHHHHHHHHh
Confidence 11121110 01112333333333322233567899999999872 34567788888
Q ss_pred hcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCC
Q 013506 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYV 229 (441)
Q Consensus 151 ~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~ 229 (441)
+.... ++++|.+++.+..+.+.+.+ |+. .+.|+.++.++....+...+...+...+. .++.++..+.| +
T Consensus 146 Eep~~------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 146 EEPPQ------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred hcCCC------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 76322 45666777878888899988 885 79999999999999998877766544332 36677777664 4
Q ss_pred HHHHHHHHHH
Q 013506 230 GADLEALCRE 239 (441)
Q Consensus 230 ~~~i~~l~~~ 239 (441)
.+.+...++.
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 4544444444
No 144
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.57 E-value=2.7e-13 Score=125.96 Aligned_cols=188 Identities=23% Similarity=0.273 Sum_probs=119.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-----AHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~-----~~~~~v~~~~~~ 90 (441)
..+++++|++.+++.|.+++..+ ...+++|+||||||||++++.+++.+. .+++++++.++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 56799999999999999987531 123799999999999999999999874 245677765543
Q ss_pred cccc-------------cc-------hHHHHHHHHHHHHhh-hhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 91 KAHV-------------GE-------SEKALREAFSQASSH-ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 91 ~~~~-------------~~-------~~~~~~~~~~~~~~~-~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
.... +. ....+..+....... .....+.+++|||++.+. ......|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~----------~~~~~~L~~~ 148 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR----------EDAQQALRRI 148 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC----------HHHHHHHHHH
Confidence 1110 00 011122222111111 112345699999998772 2345566666
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGY 228 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~ 228 (441)
++.... ...+|.+++.+..+.+.+.+ |+. .+.+++|+.+++.+++...+.......+ ..++.++..+. .
T Consensus 149 le~~~~------~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-g 218 (337)
T PRK12402 149 MEQYSR------TCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-G 218 (337)
T ss_pred HHhccC------CCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-C
Confidence 665322 23455556556667777877 764 7899999999999999988776665433 33677777664 3
Q ss_pred CHHHHHHH
Q 013506 229 VGADLEAL 236 (441)
Q Consensus 229 ~~~~i~~l 236 (441)
+.+.+...
T Consensus 219 dlr~l~~~ 226 (337)
T PRK12402 219 DLRKAILT 226 (337)
T ss_pred CHHHHHHH
Confidence 44444333
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.57 E-value=1.8e-13 Score=125.69 Aligned_cols=155 Identities=25% Similarity=0.358 Sum_probs=108.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
.++++++|++.+++.+..++... ..++.++|+||||+|||++++++++.++.+++++++.. . . ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-R-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-c-HH
Confidence 68899999999999999887431 13456777999999999999999999988888888765 1 1 11
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
.....+..... .......+.+++|||+|.+.. ......+...++.... ++.+|.++|.+..+
T Consensus 83 ~i~~~l~~~~~---~~~~~~~~~vliiDe~d~l~~---------~~~~~~L~~~le~~~~------~~~~Ilt~n~~~~l 144 (316)
T PHA02544 83 FVRNRLTRFAS---TVSLTGGGKVIIIDEFDRLGL---------ADAQRHLRSFMEAYSK------NCSFIITANNKNGI 144 (316)
T ss_pred HHHHHHHHHHH---hhcccCCCeEEEEECcccccC---------HHHHHHHHHHHHhcCC------CceEEEEcCChhhc
Confidence 11111211111 111123478999999987621 1234445555654322 46788889988899
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHH
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~ 206 (441)
.+.+.+ ||. .+.++.|+.+++..++...
T Consensus 145 ~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 145 IEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 999998 885 7899999999998776654
No 146
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=2.2e-14 Score=133.32 Aligned_cols=147 Identities=29% Similarity=0.267 Sum_probs=100.1
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhh---cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccC
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSR---LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVG 366 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g 366 (441)
.+.|++.+++.+...+............ -...+..++||+||||||||++|+++|..++.+++.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3789999998886655321111111000 01124578999999999999999999999999999999988653 5888
Q ss_pred chHHH-HHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC------------CCCe
Q 013506 367 ESEAL-LRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE------------QAKV 429 (441)
Q Consensus 367 ~~~~~-~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~~~ 429 (441)
+.... +..+++.+ ....++||||||||++.+.+++.+.+.+-.+..+.+.||+.||+.. ....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76443 45555432 2346789999999999877544333333334578999999998631 1234
Q ss_pred EEEEeeee
Q 013506 430 IIYPISFI 437 (441)
Q Consensus 430 v~~~~~~~ 437 (441)
++|.++|+
T Consensus 232 ~~i~t~ni 239 (412)
T PRK05342 232 IQVDTTNI 239 (412)
T ss_pred EEeccCCc
Confidence 67777777
No 147
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-14 Score=128.43 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=104.8
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCc
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE 367 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~ 367 (441)
.+..++-...+++.+.++-.. .........|-++++||||||||||.+|+-+|...|++.-.+.+.|+-- .-.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~a-----TaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIA-----TANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHH-----hcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchH
Confidence 355566666666666554321 1111123355678999999999999999999999999998888888533 3345
Q ss_pred hHHHHHHHHHHHHhcCCe-EEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 368 SEALLRNTFQRARLAAPS-IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~-vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
....+.++|+.+..++.. +|||||+|.+++.|.. +..++.....+|.|| +-.|-.+++.|+++|||-
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlL-fRTGdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALL-FRTGDQSRDIVLVLATNR 494 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHH-HHhcccccceEEEeccCC
Confidence 577899999999876544 8999999999998854 344555677899999 455778899999999984
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=4.4e-13 Score=121.81 Aligned_cols=183 Identities=21% Similarity=0.355 Sum_probs=124.3
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhc-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-cccc-c
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKL-GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVG-E 96 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~-~~~~-~ 96 (441)
-++|++++|+.+..++............+ .-.++++++|+||||||||++++.++..++.+++.+++..+.. .+.+ +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 49999999999998886532222111111 1124589999999999999999999999999999999876653 4444 3
Q ss_pred hHHHHHHHHHHHHh--------------------------------h---------------------------------
Q 013506 97 SEKALREAFSQASS--------------------------------H--------------------------------- 111 (441)
Q Consensus 97 ~~~~~~~~~~~~~~--------------------------------~--------------------------------- 111 (441)
.+..++.++..+.. .
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 33334433333200 0
Q ss_pred ----------------------------------------------------------------------hhcCCCeEEE
Q 013506 112 ----------------------------------------------------------------------ALSGKPSVVF 121 (441)
Q Consensus 112 ----------------------------------------------------------------------~~~~~~~il~ 121 (441)
....+.+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0012456999
Q ss_pred EccccccccCCCC-C-chhhHHHHHHHHHHHhcCCCCC----CCCCeEEEEEEc----CCCCccCHHHhhCCccceEEEe
Q 013506 122 IDEIDALCPRRDH-R-REQDVRIASQLFTLMDSNKPSK----TSVPHVVVVAST----NRVDAIDPALRRSGRFDAEVEV 191 (441)
Q Consensus 122 iDe~~~l~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~vi~~~----~~~~~l~~~l~~~~r~~~~i~~ 191 (441)
|||+|.++..... + .-...-+++.|+..+++..... ....+++||++. ..|..|-|.|.- ||..++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 9999999876521 1 2233457888999888743221 123467888764 245667788876 99999999
Q ss_pred cCCCHHHHHHHHH
Q 013506 192 TVPTAEERFEILK 204 (441)
Q Consensus 192 ~~p~~~~~~~il~ 204 (441)
.+++.++..+|+.
T Consensus 331 ~~L~~edL~rILt 343 (441)
T TIGR00390 331 QALTTDDFERILT 343 (441)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999983
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.3e-13 Score=131.33 Aligned_cols=191 Identities=21% Similarity=0.250 Sum_probs=129.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----ccC----
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----SPH---- 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v----~~~---- 87 (441)
..|++++|++.+++.|.+++... ...+++||+||+|+|||++|+.+++.+....... .|.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 67899999999999999988541 1246899999999999999999999986521100 000
Q ss_pred ----------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC
Q 013506 88 ----------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP 155 (441)
Q Consensus 88 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 155 (441)
++. ..........++++...+......+...|+||||+|.| .....+.|+..++...
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L----------t~~a~naLLK~LEePp- 149 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML----------STAAFNALLKTLEEPP- 149 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc----------CHHHHHHHHHHHhcCC-
Confidence 000 00111233456666665554443455679999999988 3356788888888632
Q ss_pred CCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHH
Q 013506 156 SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLE 234 (441)
Q Consensus 156 ~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~ 234 (441)
..+++|.+++.+..+.+.+++ |+. .+.|..++.++....+.....+.....+ ..+..++..+.|. .+.+.
T Consensus 150 -----~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~-lr~A~ 220 (620)
T PRK14948 150 -----PRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGG-LRDAE 220 (620)
T ss_pred -----cCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHH
Confidence 246777777777788888888 885 7899999999988888777666544332 2356666666653 34443
Q ss_pred HHHH
Q 013506 235 ALCR 238 (441)
Q Consensus 235 ~l~~ 238 (441)
.+++
T Consensus 221 ~lLe 224 (620)
T PRK14948 221 SLLD 224 (620)
T ss_pred HHHH
Confidence 4333
No 150
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.56 E-value=7.4e-13 Score=124.32 Aligned_cols=221 Identities=21% Similarity=0.264 Sum_probs=130.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEccCcc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHSV 89 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---------~~~~~v~~~~~ 89 (441)
++++|.++.++.|..++..... + ..+.+++|+||||||||++++.+++.+. ..++++++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 5799999999999998754211 1 2346799999999999999999987653 35677777543
Q ss_pred cccc--c-----------------c-chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 90 HKAH--V-----------------G-ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 90 ~~~~--~-----------------~-~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
.... . + ........++.... ...++.||+|||+|.+.... ...+..+..+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~-------~~~L~~l~~~ 155 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDD-------DDLLYQLSRA 155 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCC-------cHHHHhHhcc
Confidence 2210 0 0 00111112222111 12446799999999986211 1234444443
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCCC--CCccc-HHHH-
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPL--DANVD-LEAI- 221 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~~--~~~~~-~~~l- 221 (441)
.+... ....++.+|+++|.+. .+++++.+ ||. ..+.|++++.+++.+|++..+..... ..+.+ ++.+
T Consensus 156 ~~~~~---~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 156 RSNGD---LDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred ccccC---CCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 22111 1223678888888775 57788877 664 57999999999999999988752111 11111 2333
Q ss_pred --HHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 222 --ATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 222 --~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
+..+.|. .+.+..+++.+...+..+. ...++.+++..+....
T Consensus 231 ~~~~~~~Gd-~R~al~~l~~a~~~a~~~~--------~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 231 ALAAQEHGD-ARKAIDLLRVAGEIAEREG--------AERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHhcCC-HHHHHHHHHHHHHHHHHcC--------CCCCCHHHHHHHHHHH
Confidence 3333443 4444556666655444332 1246677776655533
No 151
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.55 E-value=3.4e-14 Score=131.17 Aligned_cols=147 Identities=31% Similarity=0.324 Sum_probs=100.3
Q ss_pred cccCchhHHHHHHHHHhcccCCchhh--hh--cCC-CCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hc
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAF--SR--LGI-SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MY 364 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~--~~--~~~-~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~ 364 (441)
.+.|+++.++.+...+-......... .. .+. ....++||+||||||||++|+++|..++.++..++.+.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 46888888888876552111111000 00 001 12468999999999999999999999999999998887653 48
Q ss_pred cCch-HHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC------------CC
Q 013506 365 VGES-EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE------------QA 427 (441)
Q Consensus 365 ~g~~-~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~------------~~ 427 (441)
+|+. +..+..+++.+ ....++||||||+|++.+++.+.+.+.+-.+..+.+.||+.|+|.. ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8876 34455555432 2345679999999999987654433333344578999999998742 23
Q ss_pred CeEEEEeeee
Q 013506 428 KVIIYPISFI 437 (441)
Q Consensus 428 ~~v~~~~~~~ 437 (441)
..++|.+||+
T Consensus 238 ~~i~i~TsNi 247 (413)
T TIGR00382 238 EFIQIDTSNI 247 (413)
T ss_pred CeEEEEcCCc
Confidence 4588999998
No 152
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.55 E-value=6.4e-13 Score=130.74 Aligned_cols=228 Identities=23% Similarity=0.354 Sum_probs=133.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
.+|++++|++...+.+.+.+.. ..+.+++|+|||||||||+++.+.+.. +.+++.++
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 5778999999998887665532 235689999999999999999998655 34578888
Q ss_pred cCccccc-------cccchHH----HHHHHHHHH------HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHH
Q 013506 86 PHSVHKA-------HVGESEK----ALREAFSQA------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT 148 (441)
Q Consensus 86 ~~~~~~~-------~~~~~~~----~~~~~~~~~------~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~ 148 (441)
+..+... ..+.... .....+... ........+++|||||++.| +...+..++.
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L----------d~~~Q~~Ll~ 287 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL----------DPLLQNKLLK 287 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC----------CHHHHHHHHH
Confidence 7654210 0110000 000000000 00000112569999999877 4456667777
Q ss_pred HHhcCCC----------------------CCCCCCeEEEEE-EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHH
Q 013506 149 LMDSNKP----------------------SKTSVPHVVVVA-STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 149 ~~~~~~~----------------------~~~~~~~~~vi~-~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~ 205 (441)
.++.... ......++++++ |++.+..+++++.+ ||. .+.+++++.+++..|++.
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~ 364 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLN 364 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHH
Confidence 7754210 001122355555 45567789999988 886 678999999999999999
Q ss_pred HhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 206 YTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 206 ~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.+.......+.. ++.++..+. .++..-+.+..+......+............++.+++......
T Consensus 365 ~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 365 AAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 887654433323 344444333 3444434444443332222110011112356788888777653
No 153
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7.1e-13 Score=129.04 Aligned_cols=188 Identities=15% Similarity=0.249 Sum_probs=125.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE----------Ec
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV----------IS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~----------v~ 85 (441)
..|++++|++.+++.|.+++... ..++.+||+||+||||||+|+.+|+.+....-. -.
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 56799999999999999987441 235679999999999999999999998652100 00
Q ss_pred cC--------------ccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 86 PH--------------SVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 86 ~~--------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
|. ++. ..........++.+.+........+...|++|||+|.+ .....+.|+..
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~L----------t~~a~naLLK~ 150 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHML----------STAAFNAFLKT 150 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhc----------CHHHHHHHHHH
Confidence 00 000 00000112345555555444344456789999999987 23457788888
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGY 228 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~ 228 (441)
++.... .+++|.+++.+..+.+.+.+ |+. .+.|..++.++....+...+.......+ ..++.++..+.|
T Consensus 151 LEePp~------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G- 220 (620)
T PRK14954 151 LEEPPP------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG- 220 (620)
T ss_pred HhCCCC------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 887432 35666666667888888888 775 8999999999999888887766554332 235666666665
Q ss_pred CHHHHHH
Q 013506 229 VGADLEA 235 (441)
Q Consensus 229 ~~~~i~~ 235 (441)
+.+.+..
T Consensus 221 dlr~al~ 227 (620)
T PRK14954 221 SMRDAQS 227 (620)
T ss_pred CHHHHHH
Confidence 3343333
No 154
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.53 E-value=3e-13 Score=115.99 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=115.0
Q ss_pred ccccc-cc--hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCc
Q 013506 17 AEEAI-GG--NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHS 88 (441)
Q Consensus 17 ~~~~i-~G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~ 88 (441)
+|++. +| ++.+......+...+ + ....+++|+||+|+|||+|++++++++ +..++++++.+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~----------~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~ 74 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENP----------G-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE 74 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHST----------T-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcC----------C-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH
Confidence 34554 35 455565555544331 1 123579999999999999999998765 45678888776
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
+...............|.... ...++|+|||++.+.. ...++..++.+++...... +-+++++
T Consensus 75 f~~~~~~~~~~~~~~~~~~~~-----~~~DlL~iDDi~~l~~--------~~~~q~~lf~l~n~~~~~~----k~li~ts 137 (219)
T PF00308_consen 75 FIREFADALRDGEIEEFKDRL-----RSADLLIIDDIQFLAG--------KQRTQEELFHLFNRLIESG----KQLILTS 137 (219)
T ss_dssp HHHHHHHHHHTTSHHHHHHHH-----CTSSEEEEETGGGGTT--------HHHHHHHHHHHHHHHHHTT----SEEEEEE
T ss_pred HHHHHHHHHHcccchhhhhhh-----hcCCEEEEecchhhcC--------chHHHHHHHHHHHHHHhhC----CeEEEEe
Confidence 654332211111011121111 1367999999998742 2245566666655533221 2455665
Q ss_pred cCCCC---ccCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 169 TNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 169 ~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
...|. .+++++.+ |+. ..+.+.+|+.+.+.+|++..........+.+ ++.++.... -+.+.+..++.....
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDA 214 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHH
T ss_pred CCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHH
Confidence 55555 35688988 664 6899999999999999999888877765544 566666654 467777777665543
No 155
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=9.2e-13 Score=129.49 Aligned_cols=186 Identities=20% Similarity=0.295 Sum_probs=126.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~-------------- 81 (441)
..|++++|++.+++.|..++... ..++.+||+||+|+|||++++.+++.++...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 57799999999999999887541 2346789999999999999999999885321
Q ss_pred -----------EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH
Q 013506 82 -----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (441)
Q Consensus 82 -----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~ 150 (441)
+.++.. .......++.+..........+...|+||||+|.| .....+.|+..+
T Consensus 81 ~~i~~~~~~d~~~i~~~------~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L----------~~~a~naLLk~L 144 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAA------SHTSVDDAREIIERVQFRPALARYKVYIIDEVHML----------STAAFNALLKTL 144 (585)
T ss_pred HHHhcCCCCeEEEEecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC----------CHHHHHHHHHHH
Confidence 111110 01112234444443333333345679999999987 235577788888
Q ss_pred hcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCC
Q 013506 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYV 229 (441)
Q Consensus 151 ~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~ 229 (441)
+... +++++|.+++....+.+.+.+ |+. .+.|..++..+...++...+.......+. .+..++..+.| +
T Consensus 145 Eepp------~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 145 EEPP------PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred hcCC------CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7643 246666667777778888887 775 78999999999999988887766554332 35666666665 5
Q ss_pred HHHHHHHHHH
Q 013506 230 GADLEALCRE 239 (441)
Q Consensus 230 ~~~i~~l~~~ 239 (441)
.+.+.+.++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 156
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.53 E-value=4.1e-12 Score=110.72 Aligned_cols=126 Identities=27% Similarity=0.319 Sum_probs=88.0
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC------------CCccCHHHhhCCc
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSGR 184 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~------------~~~l~~~l~~~~r 184 (441)
|.||||||+|.| +.++...|.+.++..-. . ++|.++|+ |.-+|..++. |
T Consensus 292 pGVLFIDEvHmL----------DIE~FsFlnrAlEse~a------P-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML----------DIECFSFLNRALESELA------P-IIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh----------hHHHHHHHHHHhhcccC------c-EEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 679999999988 66778888888876432 2 44445553 4567888888 8
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHh
Q 013506 185 FDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTME 263 (441)
Q Consensus 185 ~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e 263 (441)
.- ++...+++.++..+|++..........+.+ ++.+++.....+-+..-+++.-+...+..+... .+..+
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~--------~V~~~ 423 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSK--------RVEVE 423 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCC--------eeehh
Confidence 74 889999999999999998887766654433 677777666666666666666666666665432 35566
Q ss_pred hHHhhhh
Q 013506 264 DWRHARS 270 (441)
Q Consensus 264 ~~~~~~~ 270 (441)
|+..+..
T Consensus 424 dVe~a~~ 430 (450)
T COG1224 424 DVERAKE 430 (450)
T ss_pred HHHHHHH
Confidence 6655433
No 157
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.53 E-value=1.2e-12 Score=120.77 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=120.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~~ 90 (441)
.++++++|++.+++.|..++... ...+++|+||||||||++++.+++.+.. .++.+++....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 56799999999999999887431 2236999999999999999999998743 23444332211
Q ss_pred cccccchHHHHHHHHHHHHhhh-hc-CCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 91 KAHVGESEKALREAFSQASSHA-LS-GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
....+...+....... .. ..+.+++|||++.+. ......+...++.... ++.+|.+
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~----------~~~~~~L~~~le~~~~------~~~lIl~ 138 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT----------SDAQQALRRTMEMYSQ------NTRFILS 138 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC----------HHHHHHHHHHHhcCCC------CCeEEEE
Confidence 1111222222211111 11 235799999998772 1334566666665332 3456666
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHH
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCRE 239 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~ 239 (441)
++.+..+.+.+.+ |+. .+.+++++.++...++...+....... +..+..++..+.| +.+.+.+.++.
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 7777777778887 775 689999999999999998887766543 3347777777665 34444444443
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=5.2e-13 Score=133.09 Aligned_cols=208 Identities=19% Similarity=0.253 Sum_probs=134.4
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccc-----c
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH-----V 94 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~-----~ 94 (441)
.|+|++++++.|.+.+......-.. .-+|..+++|+||||||||++|+.+|+.++.+++.+++.++.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~----~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGH----EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccC----CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 4899999999999998652211000 112345799999999999999999999999999999887764321 1
Q ss_pred cch----HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCCCCCeEEE
Q 013506 95 GES----EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKTSVPHVVV 165 (441)
Q Consensus 95 ~~~----~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~v 165 (441)
+.. .......+..... ....+|+|+||+|.+ +.++.+.|+..++.... ......++++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKA----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred CCCCCcccccccchHHHHHH---hCCCcEEEeccHhhh----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 100 0000111211111 123589999999988 34678888888875322 1123346788
Q ss_pred EEEcCCC-------------------------CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc-------CCCC
Q 013506 166 VASTNRV-------------------------DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK-------VPLD 213 (441)
Q Consensus 166 i~~~~~~-------------------------~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~-------~~~~ 213 (441)
|+|+|.- ..+.|.+.. |++.++.|++.+.++..+|+...+.. ....
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~ 679 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVS 679 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9998832 125578877 99999999999999999998765432 2232
Q ss_pred Cccc---HHHHHHHC--CCCCHHHHHHHHHHHHHHHHH
Q 013506 214 ANVD---LEAIATSC--NGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 214 ~~~~---~~~l~~~~--~g~~~~~i~~l~~~a~~~~~~ 246 (441)
...+ .+.++... ..+..|.++.+++......+.
T Consensus 680 l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 680 LEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred ceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHH
Confidence 2222 44455433 235567788777766555444
No 159
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.52 E-value=5.7e-14 Score=124.54 Aligned_cols=113 Identities=31% Similarity=0.412 Sum_probs=82.3
Q ss_pred ccccccccCchhHH---HHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 286 KVTWEDIGGLRDLK---KKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 286 ~~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..++++++|++++. ..+...++. ..-.+++|+|||||||||+|+++|...+..|..++.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA----- 81 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA----- 81 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc-----
Confidence 34577777776653 333333321 234579999999999999999999999999999998
Q ss_pred hccCchHHHHHHHHHHHHhc----CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLA----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~----~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+-.+.+++++++++|+.. ...|||+|||+.+-.. =-+.||-.|+ .+.|+++|+|
T Consensus 82 --v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGAT 139 (436)
T COG2256 82 --VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGAT 139 (436)
T ss_pred --ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEecc
Confidence 445678899999999543 3479999999998532 1367777775 3556666655
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.52 E-value=2e-12 Score=112.41 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=110.7
Q ss_pred ccccccc-c-hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccCccc
Q 013506 16 KAEEAIG-G-NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~-G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~~~~~~ 90 (441)
..|++.+ | +..+...+.++... ....+++|+||+|||||+++++++..+. ..+.+++.....
T Consensus 19 ~~fd~f~~~~n~~a~~~l~~~~~~-------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (235)
T PRK08084 19 ETFASFYPGDNDSLLAALQNALRQ-------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA 85 (235)
T ss_pred CCccccccCccHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh
Confidence 3456644 4 66667777665422 1346899999999999999999988753 334555443321
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
. ....+.+... +..+|+|||++.+... ..+...++..+........ ..+++++.+
T Consensus 86 ~--------~~~~~~~~~~------~~dlliiDdi~~~~~~--------~~~~~~lf~l~n~~~e~g~---~~li~ts~~ 140 (235)
T PRK08084 86 W--------FVPEVLEGME------QLSLVCIDNIECIAGD--------ELWEMAIFDLYNRILESGR---TRLLITGDR 140 (235)
T ss_pred h--------hhHHHHHHhh------hCCEEEEeChhhhcCC--------HHHHHHHHHHHHHHHHcCC---CeEEEeCCC
Confidence 1 1111121111 1369999999987321 1233344444433221110 134555555
Q ss_pred CCCc---cCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 171 RVDA---IDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 171 ~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
++.. +.+++.+ |+. .++.+.+|+.+++.++++..........+. -++.++..+.+ +.+.+..+++..
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 6554 5789999 774 689999999999999998866555444333 36677776664 456666666654
No 161
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.51 E-value=6.6e-14 Score=116.00 Aligned_cols=108 Identities=25% Similarity=0.328 Sum_probs=72.0
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...++++.|+++++..+.-++..+... -.+..|++|+||||+||||+|+.+|..++.++...+++.+-.
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 447889999999999877666532211 123458999999999999999999999999998877754321
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
..++..++... ....|||||||+.+- +..-+.|+..|++
T Consensus 89 ---~~dl~~il~~l--~~~~ILFIDEIHRln--------------k~~qe~LlpamEd 127 (233)
T PF05496_consen 89 ---AGDLAAILTNL--KEGDILFIDEIHRLN--------------KAQQEILLPAMED 127 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC----------------HHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhc--CCCcEEEEechhhcc--------------HHHHHHHHHHhcc
Confidence 23455555554 345699999999985 3567889999985
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=9.2e-13 Score=126.19 Aligned_cols=173 Identities=21% Similarity=0.323 Sum_probs=109.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l 128 (441)
++++|||++|+|||+|++++++.+ +..++++++.++...............|.... .+.++|+|||++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-----~~~DLLlIDDIq~l 389 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-----REMDILLVDDIQFL 389 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-----hcCCEEEEehhccc
Confidence 569999999999999999999876 45678888777654332222111111222221 23689999999987
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccceEEEecCCCHHHHHHHHHH
Q 013506 129 CPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~ 205 (441)
.... .....|+.+++...... +-+|+++...+. .+++++.++.....++.+..|+.+.|.+|++.
T Consensus 390 ~gke--------~tqeeLF~l~N~l~e~g----k~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 390 EDKE--------STQEEFFHTFNTLHNAN----KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred cCCH--------HHHHHHHHHHHHHHhcC----CCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 4321 22344444444332211 124444443443 56789999333357889999999999999999
Q ss_pred HhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 206 YTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 206 ~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
.+....+....+ ++.++.... -+.+.+..++......+
T Consensus 458 ka~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a 496 (617)
T PRK14086 458 KAVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFA 496 (617)
T ss_pred HHHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHH
Confidence 887766654433 677777665 35677777766655433
No 163
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.51 E-value=6.5e-14 Score=114.58 Aligned_cols=111 Identities=23% Similarity=0.316 Sum_probs=77.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCC----ceEEechhhhhhhccCchHHHHHHHHHHH----HhcCCeEEEEecccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEA----SFFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADV 394 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~----~~~~i~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~ 394 (441)
|..+++|+||+|||||.+|+++|+.+.. +++.++++++... ++.+..+.+++..+ ......|||||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5678999999999999999999999996 8999999987661 11111122222211 122223999999999
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHhcC----------CCCCCeEEEEeeeee
Q 013506 395 VGAKRGGSSSTSITVGERLLSTLLTEMDG----------LEQAKVIIYPISFIF 438 (441)
Q Consensus 395 ~~~~r~~~~~~~~~~~~~~~~~ll~~l~~----------~~~~~~v~~~~~~~~ 438 (441)
++++ .+.+.+-.+..+.+.||+.||+ +.-.+.+||+++|+.
T Consensus 80 a~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9986 3334556678999999999975 222445777777764
No 164
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.50 E-value=1.3e-12 Score=113.92 Aligned_cols=186 Identities=20% Similarity=0.279 Sum_probs=116.4
Q ss_pred cccccc--chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccc
Q 013506 17 AEEAIG--GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHK 91 (441)
Q Consensus 17 ~~~~i~--G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~ 91 (441)
+|++.+ +.+..++.+.+++.. ..+.+++|+||+|||||++++.+++.. +.+++++++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 445554 466678887776521 346789999999999999999999876 35677777765432
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
.. ...+... .+..+|+|||++.+... ......+...++...... ..++++++..
T Consensus 80 ~~--------~~~~~~~------~~~~lLvIDdi~~l~~~--------~~~~~~L~~~l~~~~~~~----~~iIits~~~ 133 (226)
T TIGR03420 80 AD--------PEVLEGL------EQADLVCLDDVEAIAGQ--------PEWQEALFHLYNRVREAG----GRLLIAGRAA 133 (226)
T ss_pred hH--------HHHHhhc------ccCCEEEEeChhhhcCC--------hHHHHHHHHHHHHHHHcC----CeEEEECCCC
Confidence 11 1222111 12469999999987321 122344444444321111 2234433333
Q ss_pred CCcc--C-HHHhhCCcc--ceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 172 VDAI--D-PALRRSGRF--DAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 172 ~~~l--~-~~l~~~~r~--~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
+..+ . +.+.+ |+ ...+.+++|+.+++..+++.+........+.. ++.++.. .+.+.+++..+++.+....
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 4333 2 67776 55 46899999999999999988766555443333 6666664 5568888888888766433
No 165
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.6e-12 Score=125.98 Aligned_cols=186 Identities=19% Similarity=0.284 Sum_probs=131.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..|++|+|++.+++.|..++... ..++.+||+||+|+|||++++.+++.+.+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 56799999999999999988541 234669999999999999999999987532
Q ss_pred ----------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHH
Q 013506 81 ----------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLM 150 (441)
Q Consensus 81 ----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~ 150 (441)
++.+++.. ......++.+...+......+...|++|||+|.| +....+.|+..+
T Consensus 82 ~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L----------s~~a~naLLK~L 145 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML----------SQAAFNAFLKTL 145 (614)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC----------CHHHHHHHHHHH
Confidence 12222210 1113345566655554444556679999999987 335678888888
Q ss_pred hcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCC
Q 013506 151 DSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYV 229 (441)
Q Consensus 151 ~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~ 229 (441)
+.... ++++|.+++....+.+.+++ |+. .+.|.+++.++....+...+.......+.+ +..++..+.| +
T Consensus 146 Eepp~------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 146 EEPPS------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred hCCCC------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 87432 45677777777888899988 885 799999999999999988877766654433 6667776654 4
Q ss_pred HHHHHHHHHH
Q 013506 230 GADLEALCRE 239 (441)
Q Consensus 230 ~~~i~~l~~~ 239 (441)
.+.+...++.
T Consensus 216 lr~al~~Lek 225 (614)
T PRK14971 216 MRDALSIFDQ 225 (614)
T ss_pred HHHHHHHHHH
Confidence 4544444433
No 166
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=7.3e-12 Score=118.86 Aligned_cols=224 Identities=24% Similarity=0.278 Sum_probs=133.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCcccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAH 93 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~ 93 (441)
+.++|.++..+.|...+...+. + ..+.+++++||||||||++++.+++.+ +..++++++.......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 6799999999999988754221 1 234679999999999999999999877 3557788775432110
Q ss_pred ----------cc----chHHHHHHHHHHHHhhhh-cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 013506 94 ----------VG----ESEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (441)
Q Consensus 94 ----------~~----~~~~~~~~~~~~~~~~~~-~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (441)
.+ ........++........ .+++.||+|||+|.+.... ....+..++..++....
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~------~~~~l~~l~~~~~~~~~--- 171 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE------GNDVLYSLLRAHEEYPG--- 171 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC------CchHHHHHHHhhhccCC---
Confidence 00 000001122222211111 2346899999999886211 12345666665554321
Q ss_pred CCCeEEEEEEcCCCC---ccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCC---CCCcccHHHHHHHCCC--CC
Q 013506 159 SVPHVVVVASTNRVD---AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVP---LDANVDLEAIATSCNG--YV 229 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~---~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~---~~~~~~~~~l~~~~~g--~~ 229 (441)
.++.+|+++|... .+++++.+ |+. ..+.|++++.++..+|++..+.... .-.+..++.++..+.+ ..
T Consensus 172 --~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 172 --ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred --CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 1577777777653 46788777 553 4789999999999999998775421 1122224555555522 22
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 230 GADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 230 ~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
.+.+-.++..+...+..+. ...++.+++..+....
T Consensus 248 ~r~a~~ll~~a~~~a~~~~--------~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 248 ARVAIDLLRRAGLIAEREG--------SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHHH
Confidence 3444455555554444332 2346777777666544
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=2.6e-12 Score=125.33 Aligned_cols=180 Identities=20% Similarity=0.230 Sum_probs=114.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEccCc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVISPHS 88 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----------~~~~~v~~~~ 88 (441)
+.|.|.|+..+.|..++...+. +-.++..++|+|+||||||++++.+++++. ..+++++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 6799999999999998854221 122334567999999999999999987761 4467888855
Q ss_pred cccccc----------------c-chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 89 VHKAHV----------------G-ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 89 ~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
+..... + .....+..+|..... ......||+|||+|.|... ..+++..|+++..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK-------~QDVLYnLFR~~~ 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITK-------TQKVLFTLFDWPT 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCcc-------HHHHHHHHHHHhh
Confidence 332210 0 011223333332211 1123569999999998642 2244555555433
Q ss_pred cCCCCCCCCCeEEEEEEcCC---CCccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHH
Q 013506 152 SNKPSKTSVPHVVVVASTNR---VDAIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIAT 223 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~---~~~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~ 223 (441)
. ....+.+|+++|. +..+++++.+ |+. ..+.|++|+.+++.+|+...+...... .+..++.++.
T Consensus 898 ~------s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 898 K------INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred c------cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 2 1226889999886 4467788888 554 248899999999999999887754211 2222555555
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=5.3e-13 Score=127.84 Aligned_cols=172 Identities=24% Similarity=0.334 Sum_probs=108.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.++++|+||+|+|||+|++++++.+ +..++++++.++...............|.... ...++|+|||++.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dlLiiDDi~~ 222 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-----RSVDVLLIDDIQF 222 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-----hcCCEEEEehhhh
Confidence 3679999999999999999999887 44577887766543322221111111122111 1367999999998
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc---cCHHHhhCCccc--eEEEecCCCHHHHHHH
Q 013506 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRFD--AEVEVTVPTAEERFEI 202 (441)
Q Consensus 128 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~~~~i 202 (441)
+.... .....++..++...... ..+++++..+|.. +++++.+ ||. ..+.+.+|+.+++.+|
T Consensus 223 l~~~~--------~~~~~l~~~~n~l~~~~----~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 223 LAGKE--------RTQEEFFHTFNALHEAG----KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred hcCCH--------HHHHHHHHHHHHHHHCC----CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHH
Confidence 74321 12334444443322111 2355555555544 6788888 774 5799999999999999
Q ss_pred HHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 203 LKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 203 l~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
++..+.......+. .++.++..+. -+.+.+..++......+
T Consensus 289 l~~~~~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 289 LKKKAEEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYA 330 (450)
T ss_pred HHHHHHHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHH
Confidence 99988765544332 3666677665 35677776666655443
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.49 E-value=5.5e-12 Score=115.33 Aligned_cols=187 Identities=17% Similarity=0.195 Sum_probs=120.4
Q ss_pred cccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEE-c
Q 013506 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------LTVI-S 85 (441)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-------~~~v-~ 85 (441)
....+++++|++++++.|...+... .-++.+||+||+|+|||++++.+++.+... .... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4566789999999999999988542 234679999999999999999999987541 1000 0
Q ss_pred c---C-----------ccc---cc--c------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhH
Q 013506 86 P---H-----------SVH---KA--H------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDV 140 (441)
Q Consensus 86 ~---~-----------~~~---~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~ 140 (441)
+ . ++. .. . ..-....++.+.+........+...|++|||+|.| +.
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l----------~~ 155 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM----------NR 155 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc----------CH
Confidence 0 0 000 00 0 00112233443333333333455679999999988 44
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHH
Q 013506 141 RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEA 220 (441)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~ 220 (441)
...+.|+..++.... +.++|..++.++.+.+.+++ |+. .+.+++|+.++..+++........ ..+.....
T Consensus 156 ~aanaLLk~LEEpp~------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~ 225 (351)
T PRK09112 156 NAANAILKTLEEPPA------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQG-SDGEITEA 225 (351)
T ss_pred HHHHHHHHHHhcCCC------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccC-CCHHHHHH
Confidence 667888888876332 34555556778888899988 884 899999999999999987432222 11222455
Q ss_pred HHHHCCCCCHHH
Q 013506 221 IATSCNGYVGAD 232 (441)
Q Consensus 221 l~~~~~g~~~~~ 232 (441)
++..+.|.....
T Consensus 226 i~~~s~G~pr~A 237 (351)
T PRK09112 226 LLQRSKGSVRKA 237 (351)
T ss_pred HHHHcCCCHHHH
Confidence 666666543333
No 170
>PRK06893 DNA replication initiation factor; Validated
Probab=99.49 E-value=1.9e-12 Score=112.21 Aligned_cols=161 Identities=12% Similarity=0.158 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccccc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~ 130 (441)
..++|+||||||||++++++++++ +....+++...... .....+... .+.++|+|||++.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~------~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL------EQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc------ccCCEEEEeChhhhcC
Confidence 458999999999999999999876 33445554432110 011112111 2357999999998743
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC---HHHhhCCccceEEEecCCCHHHHHHHHHHHh
Q 013506 131 RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID---PALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (441)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~---~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~ 207 (441)
.. .+...++..++...... ..++++++...|..++ +++.++.++...+.+++|+.+++.++++..+
T Consensus 106 ~~--------~~~~~l~~l~n~~~~~~---~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 106 NE--------EWELAIFDLFNRIKEQG---KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred Ch--------HHHHHHHHHHHHHHHcC---CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 21 22334555554332211 1244555555566554 7888844455788999999999999999877
Q ss_pred ccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHH
Q 013506 208 KKVPLDANVD-LEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 208 ~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
.......+.+ ++.++....+ +.+.+..++...
T Consensus 175 ~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 175 YQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred HHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 6555543333 6677776663 455665555544
No 171
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7e-12 Score=115.03 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=136.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEccCcccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-----LTVISPHSVHKAH 93 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-----~~~v~~~~~~~~~ 93 (441)
+++.+.|++++++..++...+.. ..|.+++++|+||||||++++.+++++... ++++||......+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 45999999999999987553221 245579999999999999999999988543 7888886643321
Q ss_pred ---------------ccchH-HHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 013506 94 ---------------VGESE-KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (441)
Q Consensus 94 ---------------~~~~~-~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (441)
.+... +....+++.... .....|+++||+|.|..... +.+..|+......
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~-------~~LY~L~r~~~~~---- 153 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDG-------EVLYSLLRAPGEN---- 153 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---cCCeEEEEEcchhhhccccc-------hHHHHHHhhcccc----
Confidence 01111 111122222211 23467999999999975432 4566666655544
Q ss_pred CCCCeEEEEEEcCCCC---ccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCCCCCc--cc-HHHHH---HHCCC
Q 013506 158 TSVPHVVVVASTNRVD---AIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPLDAN--VD-LEAIA---TSCNG 227 (441)
Q Consensus 158 ~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~--~~-~~~l~---~~~~g 227 (441)
..++.+|+.+|..+ .+++++.+ ++. ..+.|++++.+|...|+............ .+ ++.++ ....|
T Consensus 154 --~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 154 --KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred --ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 23688888888864 67899988 443 35899999999999999988775432221 11 33333 33333
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhh
Q 013506 228 YVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHA 268 (441)
Q Consensus 228 ~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 268 (441)
..+-.-.+++.+...+.++... .++.+++..+
T Consensus 230 -DAR~aidilr~A~eiAe~~~~~--------~v~~~~v~~a 261 (366)
T COG1474 230 -DARKAIDILRRAGEIAEREGSR--------KVSEDHVREA 261 (366)
T ss_pred -cHHHHHHHHHHHHHHHHhhCCC--------CcCHHHHHHH
Confidence 4455556677777666554432 3555555544
No 172
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=8e-13 Score=116.98 Aligned_cols=143 Identities=21% Similarity=0.256 Sum_probs=95.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc--ccccch----HHHHHHHHH---------------HHHh
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK--AHVGES----EKALREAFS---------------QASS 110 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~--~~~~~~----~~~~~~~~~---------------~~~~ 110 (441)
.+.+++|+||||||||++|+.++..++.+++.+++..-.. ...+.. ......-|. ...-
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4678999999999999999999999999999887754221 111110 010000000 0000
Q ss_pred hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC----------CCCCCeEEEEEEcCCCC-----cc
Q 013506 111 HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS----------KTSVPHVVVVASTNRVD-----AI 175 (441)
Q Consensus 111 ~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~vi~~~~~~~-----~l 175 (441)
.....++.+|++||+|.+ +.+.+..|+..++..... ...++++.+|+|+|+.. .+
T Consensus 100 ~~A~~~g~~lllDEi~r~----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 100 TLAVREGFTLVYDEFTRS----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HHHHHcCCEEEEcchhhC----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 000123579999999986 346777788877653210 11335778999999863 56
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHh
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~ 207 (441)
++++.+ ||. .+.++.|+.++..+|+....
T Consensus 170 ~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 170 QDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 888998 884 79999999999999988754
No 173
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.48 E-value=7.6e-13 Score=125.28 Aligned_cols=173 Identities=24% Similarity=0.332 Sum_probs=108.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
..+++|+||+|+|||+|++++++++ +..++++++.++...............|.... ...++|+|||++.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~dlLiiDDi~~ 210 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-----RSVDLLLIDDIQF 210 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-----HhCCEEEEehhhh
Confidence 4679999999999999999999876 45677887766543221111100011121111 1267999999998
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccc--eEEEecCCCHHHHHHH
Q 013506 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEI 202 (441)
Q Consensus 128 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~~~~i 202 (441)
+.... .....++..++...... ..+++++...|. .+++++.+ ||. ..+.+++|+.++|..|
T Consensus 211 l~~~~--------~~~~~l~~~~n~~~~~~----~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 211 LAGKE--------RTQEEFFHTFNALHENG----KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred hcCCH--------HHHHHHHHHHHHHHHCC----CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHH
Confidence 74321 12333444443321111 235555555554 35688888 774 5799999999999999
Q ss_pred HHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 013506 203 LKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREATMSAV 245 (441)
Q Consensus 203 l~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~~~~~ 245 (441)
++..+.......+. .++.++.... -+.+++..++......+.
T Consensus 277 l~~~~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 277 LQKKAEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYAS 319 (405)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 99988776654333 3677777665 456777777776655443
No 174
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.48 E-value=2.5e-12 Score=130.07 Aligned_cols=205 Identities=21% Similarity=0.316 Sum_probs=134.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL----KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAH- 93 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~- 93 (441)
+.++|++.+++.|.+.+... +.|+ ++...++|+||+|||||++|+.+++.++.+++.++++++....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~ 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence 45899999999999887542 2222 2334689999999999999999999999999999887654321
Q ss_pred ----c----cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCCCC
Q 013506 94 ----V----GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKTSV 160 (441)
Q Consensus 94 ----~----~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~ 160 (441)
. +.....-...+..... ....+|++|||+|.+. ..+...|+..++.... .....
T Consensus 526 ~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~----------~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 526 VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAH----------PDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcC----------HHHHHHHHHhhccCeeecCCCcccCC
Confidence 1 1000000111111111 1236899999999873 3677888888876422 11223
Q ss_pred CeEEEEEEcCCCC-------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC-----
Q 013506 161 PHVVVVASTNRVD-------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----- 210 (441)
Q Consensus 161 ~~~~vi~~~~~~~-------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~----- 210 (441)
.++++|+|+|... .+.|.+.. |++.++.|.+++.+++.+|++..+...
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~ 670 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLN 670 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887631 24677777 999999999999999999998766532
Q ss_pred --CCCCccc---HHHHHHHC--CCCCHHHHHHHHHHHHHHHHH
Q 013506 211 --PLDANVD---LEAIATSC--NGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 211 --~~~~~~~---~~~l~~~~--~g~~~~~i~~l~~~a~~~~~~ 246 (441)
......+ .+.++... ..+..+.++.+++......+.
T Consensus 671 ~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~ 713 (731)
T TIGR02639 671 EKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLS 713 (731)
T ss_pred hCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHH
Confidence 1111111 44555542 346678888887776555443
No 175
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.48 E-value=9.6e-12 Score=102.63 Aligned_cols=201 Identities=22% Similarity=0.254 Sum_probs=137.4
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVIS 85 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~ 85 (441)
+-+....-.+.+|+|.|.+++.|.+....... | .+.++|||+|.-|||||++++++..++. ..+++|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 33444456779999999999999987644221 1 3568999999999999999999988874 4567776
Q ss_pred cCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 013506 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 165 (441)
..++. .+-.++...... .++-|||+||+.. +.+......|...+++.... ...+++|
T Consensus 121 k~dl~---------~Lp~l~~~Lr~~---~~kFIlFcDDLSF---------e~gd~~yK~LKs~LeG~ve~--rP~NVl~ 177 (287)
T COG2607 121 KEDLA---------TLPDLVELLRAR---PEKFILFCDDLSF---------EEGDDAYKALKSALEGGVEG--RPANVLF 177 (287)
T ss_pred HHHHh---------hHHHHHHHHhcC---CceEEEEecCCCC---------CCCchHHHHHHHHhcCCccc--CCCeEEE
Confidence 65532 233334443332 3467999999731 22335567777778765433 4458999
Q ss_pred EEEcCCCCccCH--------------------HHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc---HHHH-
Q 013506 166 VASTNRVDAIDP--------------------ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD---LEAI- 221 (441)
Q Consensus 166 i~~~~~~~~l~~--------------------~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~---~~~l- 221 (441)
.+|+|+...+++ .+--+-||...+.|++++.++..+|+..+.+...+..+.+ .+.+
T Consensus 178 YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~ 257 (287)
T COG2607 178 YATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQ 257 (287)
T ss_pred EEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998654331 2222348999999999999999999999999888776421 2222
Q ss_pred -HHHCCCCCHHHHHHHHHHHH
Q 013506 222 -ATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 222 -~~~~~g~~~~~i~~l~~~a~ 241 (441)
+..-.+-+++-..++++...
T Consensus 258 WAt~rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 258 WATTRGGRSGRVAWQFIRDLA 278 (287)
T ss_pred HHHhcCCCccHhHHHHHHHHH
Confidence 33345667777777666544
No 176
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.47 E-value=5.9e-12 Score=109.65 Aligned_cols=182 Identities=19% Similarity=0.222 Sum_probs=112.3
Q ss_pred ccccccc--chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccc
Q 013506 16 KAEEAIG--GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~--G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~ 90 (441)
.+|++.+ +.+.+...+.++.. +.....+++|+||+|||||++++++++.. +..++++++..+.
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 4566755 45666666666543 12346789999999999999999999875 4567777665432
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
.. +.. .....+|+|||++.+.+ .....+...++..... +..+++.+++
T Consensus 83 ~~------------~~~------~~~~~~liiDdi~~l~~----------~~~~~L~~~~~~~~~~----~~~~vl~~~~ 130 (227)
T PRK08903 83 LA------------FDF------DPEAELYAVDDVERLDD----------AQQIALFNLFNRVRAH----GQGALLVAGP 130 (227)
T ss_pred HH------------Hhh------cccCCEEEEeChhhcCc----------hHHHHHHHHHHHHHHc----CCcEEEEeCC
Confidence 11 110 12357999999997621 2233444444332111 1223444443
Q ss_pred C-CC--ccCHHHhhCCcc--ceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 171 R-VD--AIDPALRRSGRF--DAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 171 ~-~~--~l~~~l~~~~r~--~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
. +. .+.+.+.+ |+ ...+.+++|+.+++..++...........+.+ +..++.. ..-+.+.+..+++.....+
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYS 207 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 3 22 35577777 65 46899999999999999888766655544333 5666663 4456777777777654333
No 177
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.1e-11 Score=114.06 Aligned_cols=183 Identities=20% Similarity=0.228 Sum_probs=121.7
Q ss_pred cccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE------------
Q 013506 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL------------ 81 (441)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~------------ 81 (441)
....+++|+|++.+++.|.+.+... .-++.+||+||+|+||+++|..+++.+...-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4456789999999999999988652 2356799999999999999999998773211
Q ss_pred ----------------------EEEccCccccc---cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc
Q 013506 82 ----------------------TVISPHSVHKA---HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR 136 (441)
Q Consensus 82 ----------------------~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~ 136 (441)
..+....-... ...-....++.+.+........+.+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 11110000000 000112335555544444444566789999999987
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc
Q 013506 137 EQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV 216 (441)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~ 216 (441)
+....+.|+..++.... +.++|.+++.++.+.+.+++ |+. .+.+++++.++..+++...... ....
T Consensus 154 --~~~aanaLLK~LEepp~------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 --NANAANALLKVLEEPPA------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred --CHHHHHHHHHHHhcCCC------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 45678889998887432 45777778888888888887 885 8999999999999988765321 1111
Q ss_pred cHHHHHHHCCCCCH
Q 013506 217 DLEAIATSCNGYVG 230 (441)
Q Consensus 217 ~~~~l~~~~~g~~~ 230 (441)
....++..+.|-..
T Consensus 220 ~~~~l~~~s~Gsp~ 233 (365)
T PRK07471 220 PRAALAALAEGSVG 233 (365)
T ss_pred HHHHHHHHcCCCHH
Confidence 12455555555433
No 178
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=1.2e-11 Score=107.35 Aligned_cols=159 Identities=22% Similarity=0.297 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~ 129 (441)
...++|+||+|||||+++++++..+ +....+++..++. ..+...++... +..+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l~------~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEALE------GRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHHh------cCCEEEEeCccccc
Confidence 3569999999999999999997765 4455555543321 12222232221 35799999998774
Q ss_pred cCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc---CHHHhhCCcc--ceEEEecCCCHHHHHHHHH
Q 013506 130 PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI---DPALRRSGRF--DAEVEVTVPTAEERFEILK 204 (441)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l---~~~l~~~~r~--~~~i~~~~p~~~~~~~il~ 204 (441)
... .....++..++...... .-+++++...|..+ ++++.+ |+ ...+.+++|+.+++.++++
T Consensus 107 ~~~--------~~~~~lf~l~n~~~~~~----~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 107 GQR--------EDEVALFDFHNRARAAG----ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CCh--------HHHHHHHHHHHHHHHcC----CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHH
Confidence 221 22334444444332111 12444444456544 688988 75 4678999999999999999
Q ss_pred HHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 205 LYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 205 ~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
..........+. .+..++..+.+ ..+.+.++++..
T Consensus 173 ~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l 208 (233)
T PRK08727 173 ERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRL 208 (233)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 876654443332 36777777663 334443444443
No 179
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.45 E-value=3.7e-12 Score=103.39 Aligned_cols=145 Identities=34% Similarity=0.481 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchH
Q 013506 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE 98 (441)
Q Consensus 22 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~ 98 (441)
+|.+.+.+.+...+.. ..+.+++++||||||||++++.+++.+ +.+++.+++............
T Consensus 1 ~~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 67 (151)
T cd00009 1 VGQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL 67 (151)
T ss_pred CchHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH
Confidence 3667777777776643 246789999999999999999999998 777888877654432221111
Q ss_pred HHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC--ccC
Q 013506 99 KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AID 176 (441)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~--~l~ 176 (441)
.... ............++.++++||++.+. ......+...+...........++.+|++++... .++
T Consensus 68 ~~~~-~~~~~~~~~~~~~~~~lilDe~~~~~----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 68 FGHF-LVRLLFELAEKAKPGVLFIDEIDSLS----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhh-hHhHHHHhhccCCCeEEEEeChhhhh----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 1000 01111112223457899999998761 1233445555544322111123578888888776 677
Q ss_pred HHHhhCCccceEEEec
Q 013506 177 PALRRSGRFDAEVEVT 192 (441)
Q Consensus 177 ~~l~~~~r~~~~i~~~ 192 (441)
+.+.+ |+...+.++
T Consensus 137 ~~~~~--r~~~~i~~~ 150 (151)
T cd00009 137 RALYD--RLDIRIVIP 150 (151)
T ss_pred hhHHh--hhccEeecC
Confidence 77777 887566655
No 180
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.8e-13 Score=124.59 Aligned_cols=116 Identities=28% Similarity=0.459 Sum_probs=88.2
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh------
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------ 363 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~------ 363 (441)
++--|++++|+.+.+++.-..- -+...+.-++|+||||+|||+++|.+|+.++..|++++..-+-+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 4556899999999998752110 133345567999999999999999999999999999886433222
Q ss_pred ---ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 364 ---YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 364 ---~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|+|....++-+.+++++-.+| +++|||+|++. +|.+++- -+.||.-||-
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDP--------asALLElLDP 535 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDP--------ASALLELLDP 535 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCCh--------HHHHHHhcCh
Confidence 888888888899999988888 99999999997 4443332 2566766665
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.44 E-value=3.8e-13 Score=119.36 Aligned_cols=145 Identities=16% Similarity=0.196 Sum_probs=98.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc--cccchHHHHH-----HHHHHHHhhhhcCCCeEEEEcc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA--HVGESEKALR-----EAFSQASSHALSGKPSVVFIDE 124 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~il~iDe 124 (441)
.+++++|.||||||||++++.+|..++.+++.+++...... ..|...-.+. ..|....-......+.+|++||
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDE 142 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDE 142 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEech
Confidence 46789999999999999999999999999999877654332 2222110000 0111110000012477899999
Q ss_pred ccccccCCCCCchhhHHHHHHHHHHHhcC--------CCCCCCCCeEEEEEEcCCCC------------ccCHHHhhCCc
Q 013506 125 IDALCPRRDHRREQDVRIASQLFTLMDSN--------KPSKTSVPHVVVVASTNRVD------------AIDPALRRSGR 184 (441)
Q Consensus 125 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~vi~~~~~~~------------~l~~~l~~~~r 184 (441)
+|.. ..+.+..|...++.. ......++.+.+|+|.|+.+ .+++++.. |
T Consensus 143 in~a----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 143 YDAG----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hhcc----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 9976 234556666666531 11223556899999999854 46889998 9
Q ss_pred cceEEEecCCCHHHHHHHHHHHhc
Q 013506 185 FDAEVEVTVPTAEERFEILKLYTK 208 (441)
Q Consensus 185 ~~~~i~~~~p~~~~~~~il~~~~~ 208 (441)
|..++.++.|+.++-.+|+.....
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhcc
Confidence 987789999999999999876543
No 182
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.5e-13 Score=126.53 Aligned_cols=116 Identities=26% Similarity=0.363 Sum_probs=88.6
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh------
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------ 363 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~------ 363 (441)
.+--|++.+|+.+.+++.-.. +..-..+.-++|+||||+|||++++.+|+.++..|+++...-+.+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 345689999999998876311 1122334567999999999999999999999999999987544333
Q ss_pred ---ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 364 ---YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 364 ---~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|+|.....+-+-+++|+..+| |++|||||++..+-.+ +- -+.||..||-
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG--DP--------aSALLEVLDP 447 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG--DP--------ASALLEVLDP 447 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC--Ch--------HHHHHhhcCH
Confidence 899888888888999998888 9999999999754211 11 3677777765
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.44 E-value=4.3e-13 Score=136.25 Aligned_cols=115 Identities=28% Similarity=0.402 Sum_probs=83.8
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh---------
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY--------- 361 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~--------- 361 (441)
++.|++.+++.+.+++...... +...+.+++|+||||||||++|+++|+.++.+++.++.....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 4678888888888776532111 112344799999999999999999999999999988654321
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
..|+|.....+.+.|..+...+| |+||||||++.+...+ ...+.||+.||.
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~ 444 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDP 444 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCH
Confidence 24778777778888888876666 9999999999853211 124677877763
No 184
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=99.44 E-value=7e-12 Score=134.12 Aligned_cols=329 Identities=20% Similarity=0.224 Sum_probs=197.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEccCccccccccchHHHHHH-HHHHHH---hhhhcCCCeEEEEccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGA-HLTVISPHSVHKAHVGESEKALRE-AFSQAS---SHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~il~iDe~~~ 127 (441)
+.+++++||+|+|||..+......... .++.++.+... .+.....+.. ..+... .....++.-++|+||++.
T Consensus 127 ~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~t---s~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinm 203 (1395)
T KOG3595|consen 127 GKPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVT---SSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINM 203 (1395)
T ss_pred CCeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeec---cHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCC
Confidence 478999999999999999887766532 22222222211 1111111111 111111 111122335999999986
Q ss_pred cccCCCCCchhhHHHHHHHHHHH---hcCCCCCCCCCeEEEEEEcCCCC----ccCHHHhhCCccceEEEecCCCHHHHH
Q 013506 128 LCPRRDHRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRVD----AIDPALRRSGRFDAEVEVTVPTAEERF 200 (441)
Q Consensus 128 l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~vi~~~~~~~----~l~~~l~~~~r~~~~i~~~~p~~~~~~ 200 (441)
...+. .+.+.....+++++... +.....+...-++.++++++++. .+++++.| +|. .+.+..|+.+...
T Consensus 204 p~~~~-yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~~~~~~sl~ 279 (1395)
T KOG3595|consen 204 PALDK-YGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLNYPSQESLT 279 (1395)
T ss_pred chhhh-cCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeCCCChhhHH
Confidence 54433 33444556666666543 33444556667899999999754 67889987 775 8999999999999
Q ss_pred HHHHHHhccCCCCCc----------------------------------ccHHHHHHHCCCCC------HHHHHHHHHHH
Q 013506 201 EILKLYTKKVPLDAN----------------------------------VDLEAIATSCNGYV------GADLEALCREA 240 (441)
Q Consensus 201 ~il~~~~~~~~~~~~----------------------------------~~~~~l~~~~~g~~------~~~i~~l~~~a 240 (441)
+|+..++........ .+++++.....|.. ......+.+.+
T Consensus 280 ~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~ 359 (1395)
T KOG3595|consen 280 QIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLW 359 (1395)
T ss_pred HHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHH
Confidence 999988776532100 11222222222211 11133445555
Q ss_pred HHHHHHhcccccccccceeeeHhhHHhhhhhccccc-------ccCcccccCccccccccCchhHHHHHHHHHh------
Q 013506 241 TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSI-------TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVE------ 307 (441)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~------ 307 (441)
.....+-+.+............+.+........... ......... ..|..+...+.+...+...+.
T Consensus 360 ~~e~~rv~~drlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~l~~~~~~~l~~~~~~~ 438 (1395)
T KOG3595|consen 360 VHEAIRVFADRLVDDEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSESH-KIYEEVLSVELLRGVLEAYLKQFNIEE 438 (1395)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHhhhhhhcCCceeeecccccc-cccCchHhHHHHHHHHHHHHHHHhhhc
Confidence 555555555543322222233333332222111111 111111111 335555555554444433222
Q ss_pred ----------cccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHH
Q 013506 308 ----------WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQ 377 (441)
Q Consensus 308 ----------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~ 377 (441)
+.+.|..+..++-..+++|.+++|.+|+||+++.+..+++.+..++++.....+. ..+...+++.++.
T Consensus 439 ~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~--~~~~~~dl~~~~r 516 (1395)
T KOG3595|consen 439 IRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN--IEDFREDLKAILR 516 (1395)
T ss_pred cCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc--HHHHHHHHHHHHH
Confidence 4566777888888999999999999999999999999999999999999988877 7778999999999
Q ss_pred HHHhcCCe-EEEEec
Q 013506 378 RARLAAPS-IIFFDE 391 (441)
Q Consensus 378 ~a~~~~~~-vl~iDE 391 (441)
.++..+.. ++.++|
T Consensus 517 ~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 517 KAGLKNKETVFILTD 531 (1395)
T ss_pred HhccCCCceEEeech
Confidence 99876654 555666
No 185
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=5.2e-12 Score=119.68 Aligned_cols=172 Identities=19% Similarity=0.252 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHH-HHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
.++++||||+|+|||+|++++++.+ +..++++++.++.......... .... |.... ..++++|+|||++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~----~~~~dvLlIDDi~ 204 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKY----RKKVDVLLIDDVQ 204 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHH----HhcCCEEEEechh
Confidence 3579999999999999999999876 3457777776654332111110 1111 11111 1237899999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc---cCHHHhhCCcc--ceEEEecCCCHHHHHH
Q 013506 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRF--DAEVEVTVPTAEERFE 201 (441)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~---l~~~l~~~~r~--~~~i~~~~p~~~~~~~ 201 (441)
.+.... .....++..+....... ..+++++...|.. +.+++.+ || ...+.+.+|+.+.|..
T Consensus 205 ~l~~~~--------~~q~elf~~~n~l~~~~----k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 205 FLIGKT--------GVQTELFHTFNELHDSG----KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hhcCcH--------HHHHHHHHHHHHHHHcC----CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHH
Confidence 874321 12233333333221111 2355555556554 4577887 66 4678999999999999
Q ss_pred HHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 202 ILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 202 il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
|++..+.......+. .++.++....+ +.+.+..++......+
T Consensus 271 IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 271 IARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 999887765444332 36666776653 6677777766654433
No 186
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=6.3e-13 Score=127.05 Aligned_cols=118 Identities=14% Similarity=0.230 Sum_probs=82.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC---------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--------------- 350 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--------------- 350 (441)
...++++.|++.+++.|...+... +....+||+||+|+||||+|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 346889999999999998887631 11224699999999999999999999976
Q ss_pred --------------ceEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhH
Q 013506 351 --------------SFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGER 412 (441)
Q Consensus 351 --------------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~ 412 (441)
++++++..+. ...+.++++.+.+. .+...|+||||+|++. ..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NH 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HH
Confidence 1223322211 12345666666543 3456799999999984 35
Q ss_pred HHHHHHHHhcCCCCCCeEEEEeee
Q 013506 413 LLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 413 ~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
..|.||+.|+....+. +||++||
T Consensus 140 AaNALLKTLEEPP~~v-~FILaTt 162 (700)
T PRK12323 140 AFNAMLKTLEEPPEHV-KFILATT 162 (700)
T ss_pred HHHHHHHhhccCCCCc-eEEEEeC
Confidence 6899999999755544 4444444
No 187
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.43 E-value=4.9e-13 Score=121.53 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=63.7
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhh-cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccC-c
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSR-LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVG-E 367 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g-~ 367 (441)
.+.|+++.++.+...+............ ....++.|++|+||||||||++|+++|..++.+++.++.+.+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4678888888887665421111100000 01223579999999999999999999999999999999998874 5777 4
Q ss_pred hHHHHHHHHHHH
Q 013506 368 SEALLRNTFQRA 379 (441)
Q Consensus 368 ~~~~~~~~~~~a 379 (441)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 567777776665
No 188
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.43 E-value=3.9e-13 Score=122.21 Aligned_cols=88 Identities=26% Similarity=0.375 Sum_probs=64.5
Q ss_pred cccCchhHHHHHHHHHhcccCCchh--hhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccC-
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTA--FSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVG- 366 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~--~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g- 366 (441)
.+.|++..++.+...+......... ..+... .+.|+||+||||||||++|+.+|..++.+++.++.+++.. .|+|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~-~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCccccccc-CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4788999998887766421111100 001111 2479999999999999999999999999999999999886 5888
Q ss_pred chHHHHHHHHHHH
Q 013506 367 ESEALLRNTFQRA 379 (441)
Q Consensus 367 ~~~~~~~~~~~~a 379 (441)
+.+..++.+|+.|
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 4467777777777
No 189
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=9.5e-13 Score=122.73 Aligned_cols=118 Identities=17% Similarity=0.228 Sum_probs=81.2
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
...++++.|++.+...+...+.. + ..+..+||+||+||||||+|+++|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 34688899999998888777653 1 122347999999999999999999998763
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
+++++...- ...+.++++.+.+. .+...|+||||+|.+. ...++.|
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 333333211 11344555555443 3456799999999984 3578999
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+..+ ...++|++||
T Consensus 142 LKtLEEPp-~~viFILaTt 159 (484)
T PRK14956 142 LKTLEEPP-AHIVFILATT 159 (484)
T ss_pred HHHhhcCC-CceEEEeecC
Confidence 99998643 4455555555
No 190
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=99.43 E-value=9.6e-13 Score=132.40 Aligned_cols=333 Identities=16% Similarity=0.087 Sum_probs=184.0
Q ss_pred HHhcCCCCCcEEEEEcCCCCcHHHHHH-HHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhc-------C-
Q 013506 45 AQKLGLKWPRGLLLYGPPGTGKTSLVR-AVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALS-------G- 115 (441)
Q Consensus 45 ~~~~~~~~~~~vll~Gp~GtGKT~l~~-~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~- 115 (441)
+.+..+...+++++|||||+|||++.. .+-.+....++.+|.+... ..+.+-.++.+....... .
T Consensus 1486 f~n~~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t------~T~s~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1486 FSNEALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT------MTPSKLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HHHHHHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc------CCHHHHHHHHhhceeeccCCeEEEccC
Confidence 444455677999999999999999754 5555666667766654322 122222333332221111 1
Q ss_pred ---CCeEEEEccccccccCCC-CCchhhHHHHHHHHHH---HhcCCCCCCCCCeEEEEEEcCCCCc-----cCHHHhhCC
Q 013506 116 ---KPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTL---MDSNKPSKTSVPHVVVVASTNRVDA-----IDPALRRSG 183 (441)
Q Consensus 116 ---~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~vi~~~~~~~~-----l~~~l~~~~ 183 (441)
+..|||.|||+ +|... ..++...-.+++++.. +......+....++++.++||++.. .+.++.|
T Consensus 1560 ~~vK~lVLFcDeIn--Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r-- 1635 (3164)
T COG5245 1560 PVVKDLVLFCDEIN--LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR-- 1635 (3164)
T ss_pred cchhheEEEeeccC--CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc--
Confidence 23589999999 34333 3322222223333332 2333445567788999999999764 3467765
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhccCCCCCc-c------------c--------HHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 184 RFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-V------------D--------LEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 184 r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~------------~--------~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
|- ..+++..|+...+..|+..++..-..-.+ . . .....+.-.+|+++++...++....
T Consensus 1636 ~~-v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~ 1714 (3164)
T COG5245 1636 KP-VFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFG 1714 (3164)
T ss_pred Cc-eEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHh
Confidence 33 46788899999999999876654322111 0 0 0000111156888888766654433
Q ss_pred HH-------------------HHhcccccccccceeeeHhhHH-hhhhhcccccccCcccccCcccccccc--Cchh-HH
Q 013506 243 SA-------------------VKRSSDANECAGVLSVTMEDWR-HARSVVGPSITRGVTVEIPKVTWEDIG--GLRD-LK 299 (441)
Q Consensus 243 ~~-------------------~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~--g~~~-~k 299 (441)
.+ ++...+....+........++. ...+.++....... .+ ....+..+- |++. .+
T Consensus 1715 yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~e~~~g~i-~e-~~I~fS~Il~~g~~~l~k 1792 (3164)
T COG5245 1715 YAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIREMIAGHI-GE-AEITFSMILFFGMACLLK 1792 (3164)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhccc-ch-hhhhHHHHHhccHHHHhh
Confidence 22 2222221111111111111111 11111111100000 00 000111110 1111 11
Q ss_pred HHHHHHH-------------------hcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 300 KKLQQAV-------------------EWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 300 ~~l~~~~-------------------~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+...+ +.++.|..+..|.....++|.++.|..|+||+.+.+..|+..+.+++++....-
T Consensus 1793 ~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~e~~~hr~ 1872 (3164)
T COG5245 1793 KDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMREIFGHRD 1872 (3164)
T ss_pred hhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchhhhhcccc
Confidence 1111111 134556666777777789999999999999999999999999999999998776
Q ss_pred hhhccCchHHHHHHHHHHHH-hcCCeEEEEecc
Q 013506 361 YSMYVGESEALLRNTFQRAR-LAAPSIIFFDEA 392 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDE~ 392 (441)
+. .++++..++...-.+. +....++||||-
T Consensus 1873 ~~--~~Df~d~lk~~~~~~~~~~~r~Cl~I~Es 1903 (3164)
T COG5245 1873 EL--TGDFRDSLKVQDLRRNIHGGRECLFIFES 1903 (3164)
T ss_pred cc--hhhHHHHHHHHHHhccccCCceEEEEecC
Confidence 66 8899888877766663 345568888876
No 191
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.43 E-value=1e-11 Score=110.21 Aligned_cols=79 Identities=29% Similarity=0.394 Sum_probs=52.9
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC------------CCccCHHHhhCCc
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSGR 184 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~------------~~~l~~~l~~~~r 184 (441)
|+||||||+|.| +.++...|.+.++..-. . ++|.+||+ |..+|..++. |
T Consensus 279 pGVLFIDEvHmL----------DiEcFsfLnralEs~~s------P-iiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHML----------DIECFSFLNRALESELS------P-IIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGS----------BHHHHHHHHHHHTSTT---------EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhc----------cHHHHHHHHHHhcCCCC------c-EEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 579999999988 66888888888887432 2 55555553 3467788888 8
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCCCc
Q 013506 185 FDAEVEVTVPTAEERFEILKLYTKKVPLDAN 215 (441)
Q Consensus 185 ~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~ 215 (441)
+- ++...+++.++..+|+...+.......+
T Consensus 340 ll-II~t~py~~~ei~~Il~iR~~~E~v~i~ 369 (398)
T PF06068_consen 340 LL-IIRTKPYSEEEIKQILKIRAKEEDVEIS 369 (398)
T ss_dssp EE-EEEE----HHHHHHHHHHHHHHCT--B-
T ss_pred cE-EEECCCCCHHHHHHHHHhhhhhhcCcCC
Confidence 84 8999999999999999998887766544
No 192
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.42 E-value=1.5e-12 Score=117.45 Aligned_cols=167 Identities=25% Similarity=0.336 Sum_probs=103.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEccC-
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTVISPH- 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-------~~~~v~~~- 87 (441)
.+|++++|++++++.+.-.+.. ....++||.|+||||||++++.++..++. ++-.....
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 4579999999999988864422 12368999999999999999999998842 11000000
Q ss_pred --cc---------------ccccccchHH------HHHHHHHHH-----HhhhhcCCCeEEEEccccccccCCCCCchhh
Q 013506 88 --SV---------------HKAHVGESEK------ALREAFSQA-----SSHALSGKPSVVFIDEIDALCPRRDHRREQD 139 (441)
Q Consensus 88 --~~---------------~~~~~~~~~~------~~~~~~~~~-----~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~ 139 (441)
+. .....+.+.. .+...+... ..........+||+||++.+ +
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl----------~ 141 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL----------E 141 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------C
Confidence 00 0000000000 000000000 00011123469999999987 4
Q ss_pred HHHHHHHHHHHhcCCC-------CCCCCCeEEEEEEcCCCC-ccCHHHhhCCccceEEEecCCCH-HHHHHHHHHHh
Q 013506 140 VRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPTA-EERFEILKLYT 207 (441)
Q Consensus 140 ~~~~~~l~~~~~~~~~-------~~~~~~~~~vi~~~~~~~-~l~~~l~~~~r~~~~i~~~~p~~-~~~~~il~~~~ 207 (441)
...+..|+..++.... .......+++++++|+.+ .+++.+.. ||...+.+++|.. +++.+++....
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 4677888888865321 111224688999999755 68899998 9988899888877 88888887643
No 193
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=3.3e-11 Score=109.99 Aligned_cols=176 Identities=12% Similarity=0.230 Sum_probs=119.2
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEccCc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------LTVISPHS 88 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------~~~v~~~~ 88 (441)
.|++++|++.+++.|.+.+... ..++.+||+||+|+|||++|+.+++.+.+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3689999999999999987431 235678999999999999999999976331 22232210
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
.. ......++.+..........++..|++||++|.+ +....+.|+..++... +++++|.+
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m----------~~~a~naLLK~LEepp------~~t~~il~ 129 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM----------TEQAQNAFLKTIEEPP------KGVFIILL 129 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc----------CHHHHHHHHHHhcCCC------CCeEEEEE
Confidence 11 1122345555554444444456789999999877 4467788899888633 24566666
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCH
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVG 230 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~ 230 (441)
++.++.+.+.+++ |+. .+.|++++.++....+...... . ....++.++..+.|...
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 6778899999998 885 8999999999988877654431 1 12224455555555433
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.6e-12 Score=111.55 Aligned_cols=100 Identities=33% Similarity=0.407 Sum_probs=82.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccCchHHH-HHHHHHHH----HhcCCeEEEEeccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGESEAL-LRNTFQRA----RLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g~~~~~-~~~~~~~a----~~~~~~vl~iDE~d~~~~ 397 (441)
..++||+||+|||||.||+-||++++.||-.-+.+.+-. -|+|+..++ +-++++.| ......+++|||||+++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 358999999999999999999999999999888888754 499998554 57777766 234455999999999987
Q ss_pred ccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 398 KRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.-.+.+-+.+-.+..+--.||+.++|
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcC
Confidence 66666666666678999999999998
No 195
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=2.8e-12 Score=121.11 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccccc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~ 130 (441)
++++|+||+|+|||+|++++++.+ +..++++++..+...............|... ....++|+|||++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSG 216 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcC
Confidence 689999999999999999999876 4667777766543321111110001112221 12468999999998743
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccc--eEEEecCCCHHHHHHHHHH
Q 013506 131 RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~ 205 (441)
.. .....++..++...... ..+++++...|. .+++++.+ ||. ..+.+++|+.+++.+|++.
T Consensus 217 k~--------~~qeelf~l~N~l~~~~----k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 217 KG--------ATQEEFFHTFNSLHTEG----KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred Ch--------hhHHHHHHHHHHHHHCC----CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHH
Confidence 21 12333444333221111 235555544454 46789998 774 7899999999999999998
Q ss_pred HhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHH
Q 013506 206 YTKKVPLDANVD-LEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 206 ~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
.+.......+.+ ++.++....+ +.+.+...+...
T Consensus 283 k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 283 KAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 887766544333 5556666553 455665555554
No 196
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=3.6e-12 Score=115.19 Aligned_cols=165 Identities=23% Similarity=0.314 Sum_probs=106.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEccCc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTVISPHS 88 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-------~~~~v~~~~ 88 (441)
-.|++|+|++++|..|...+..| ...+++|.|++|||||++++.+...+.. ++. .....
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 46899999999999999877653 2357999999999999999999877632 111 00000
Q ss_pred --------------------------cccccccchHHH------HHHHHHHHHh-----hhhcCCCeEEEEccccccccC
Q 013506 89 --------------------------VHKAHVGESEKA------LREAFSQASS-----HALSGKPSVVFIDEIDALCPR 131 (441)
Q Consensus 89 --------------------------~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~il~iDe~~~l~~~ 131 (441)
+.....+..... +...+..... .......++||+||++.+
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL--- 156 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL--- 156 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC---
Confidence 000000111111 1111111110 011123579999999988
Q ss_pred CCCCchhhHHHHHHHHHHHhcCC-------CCCCCCCeEEEEEEcCCCC-ccCHHHhhCCccceEEEecCCC-HHHHHHH
Q 013506 132 RDHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPT-AEERFEI 202 (441)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~vi~~~~~~~-~l~~~l~~~~r~~~~i~~~~p~-~~~~~~i 202 (441)
+...+..|+..++... .......+++++++.|+.+ .+++.+.. ||...+.+..|+ .+.+.+|
T Consensus 157 -------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~i 227 (350)
T CHL00081 157 -------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKI 227 (350)
T ss_pred -------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHH
Confidence 4467777888776421 1111234688888888765 68999998 999899999997 5899999
Q ss_pred HHHH
Q 013506 203 LKLY 206 (441)
Q Consensus 203 l~~~ 206 (441)
++..
T Consensus 228 l~~~ 231 (350)
T CHL00081 228 VEQR 231 (350)
T ss_pred HHhh
Confidence 8764
No 197
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.5e-12 Score=126.08 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=83.4
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
..+|+++.|++.+++.|...+.. + +....+||+||+||||||+|+++|+.+.+.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 34688999999999998887753 1 122246999999999999999999988652
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
+++++.++ ....+.++.+++.+. .....|+||||+|++. ...+|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 23333221 112345666666653 2456799999999984 2568999
Q ss_pred HHHhcCCCCCCeEEEEeeee
Q 013506 418 LTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~~ 437 (441)
|+.|+....+.++|+++++.
T Consensus 140 LKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 140 LKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred HHHHHhcCCCeEEEEEECCh
Confidence 99999765555555555443
No 198
>PRK06620 hypothetical protein; Validated
Probab=99.39 E-value=7.2e-11 Score=100.71 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD 133 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~ 133 (441)
.+++||||||||||++++++++..+.. .++.... ....+ ...++|+|||+|.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~~~~~-----------~~~~~---------~~~d~lliDdi~~~----- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAY--IIKDIFF-----------NEEIL---------EKYNAFIIEDIENW----- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCE--Ecchhhh-----------chhHH---------hcCCEEEEeccccc-----
Confidence 679999999999999999998877542 2221110 00111 12479999999844
Q ss_pred CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc--cCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhcc
Q 013506 134 HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA--IDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~--l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
....+-.+++.+.... +.++++++..|.. + +++++ |+. .++.+.+|+.+.+..+++.....
T Consensus 98 -----~~~~lf~l~N~~~e~g-------~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 98 -----QEPALLHIFNIINEKQ-------KYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred -----hHHHHHHHHHHHHhcC-------CEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1122233333332211 3466666655443 5 78888 664 57999999999999999887765
Q ss_pred CCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 210 VPLDAN-VDLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 210 ~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
.....+ .-++.++.... -+.+.+..+++..
T Consensus 163 ~~l~l~~ev~~~L~~~~~-~d~r~l~~~l~~l 193 (214)
T PRK06620 163 SSVTISRQIIDFLLVNLP-REYSKIIEILENI 193 (214)
T ss_pred cCCCCCHHHHHHHHHHcc-CCHHHHHHHHHHH
Confidence 544433 23667777665 3556666665553
No 199
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=4.6e-11 Score=107.78 Aligned_cols=184 Identities=17% Similarity=0.235 Sum_probs=124.2
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------- 80 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------- 80 (441)
.|++|+|++.+++.|.+.+... .-++.+||+||+|+||+++|..+++.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4689999999999999988552 235789999999999999999999886322
Q ss_pred --EEEEccCccc-cccc----------------cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHH
Q 013506 81 --LTVISPHSVH-KAHV----------------GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVR 141 (441)
Q Consensus 81 --~~~v~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~ 141 (441)
+..+...... .... .-....++.+.+........+...|++||++|.| ...
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m----------~~~ 139 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM----------NEA 139 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc----------CHH
Confidence 1222111000 0000 0011234555555554444566789999999987 446
Q ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHH
Q 013506 142 IASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAI 221 (441)
Q Consensus 142 ~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l 221 (441)
..+.|++.++... +.++|..++.++.+.|.+++ |+. .+.|++++.++..+++......... +.....+
T Consensus 140 aaNaLLK~LEEPp-------~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 140 AANALLKTLEEPG-------NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred HHHHHHHHHhCCC-------CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 7888999998743 23566667788999999999 885 8999999999999998876432111 1124566
Q ss_pred HHHCCCCCHHHHH
Q 013506 222 ATSCNGYVGADLE 234 (441)
Q Consensus 222 ~~~~~g~~~~~i~ 234 (441)
+....|-.+..+.
T Consensus 208 ~~~a~Gs~~~al~ 220 (314)
T PRK07399 208 LALAQGSPGAAIA 220 (314)
T ss_pred HHHcCCCHHHHHH
Confidence 6666665444443
No 200
>PRK05642 DNA replication initiation factor; Validated
Probab=99.38 E-value=1.6e-11 Score=106.74 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=101.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC 129 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~ 129 (441)
..+++|+||+|+|||+|++++++.+ +..+++++..++... .....+... +.++|+|||++.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~------~~d~LiiDDi~~~~ 110 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE------QYELVCLDDLDVIA 110 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh------hCCEEEEechhhhc
Confidence 3689999999999999999998764 456777776654431 111111111 24699999998763
Q ss_pred cCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc---cCHHHhhCCcc--ceEEEecCCCHHHHHHHHH
Q 013506 130 PRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRF--DAEVEVTVPTAEERFEILK 204 (441)
Q Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~---l~~~l~~~~r~--~~~i~~~~p~~~~~~~il~ 204 (441)
.. ......|+..++...... +.++++++..+.. ..+++.+ |+ ..++.+.+|+.+++.++++
T Consensus 111 ~~--------~~~~~~Lf~l~n~~~~~g----~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 111 GK--------ADWEEALFHLFNRLRDSG----RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC--------hHHHHHHHHHHHHHHhcC----CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHH
Confidence 22 123445566555432211 3466666555543 3688888 76 3678899999999999999
Q ss_pred HHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 205 LYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 205 ~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
..........+. -++.++.... -+.+.+..+++...
T Consensus 177 ~ka~~~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~ 213 (234)
T PRK05642 177 LRASRRGLHLTDEVGHFILTRGT-RSMSALFDLLERLD 213 (234)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 665554443332 3566666555 45666666666554
No 201
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.6e-12 Score=123.30 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=83.9
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
...++++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 34688999999999998888753 1 122246999999999999999999988653
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
+++++.++ ....+.++.+.+.+. .+...|+||||+|++. ...++.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHHH
Confidence 44444332 122345666666543 3456799999999985 2568999
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+..+.. .++|++||
T Consensus 140 Lk~LEepp~~-~~fIlatt 157 (509)
T PRK14958 140 LKTLEEPPSH-VKFILATT 157 (509)
T ss_pred HHHHhccCCC-eEEEEEEC
Confidence 9999986555 45555554
No 202
>PHA02244 ATPase-like protein
Probab=99.37 E-value=2.1e-11 Score=109.35 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~ 131 (441)
.+.+++|+||||||||++|++++..++.+++.++...-.....+.... ...|....-.....++.+|+|||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~--~g~~~dgpLl~A~~~GgvLiLDEId~a~-- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDA--NGKFHETPFYEAFKKGGLFFIDEIDASI-- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccc--cccccchHHHHHhhcCCEEEEeCcCcCC--
Confidence 457899999999999999999999999999988742100000000000 0011100000001247899999999762
Q ss_pred CCCCchhhHHHHHHHHHHHhcC-----CCCCCCCCeEEEEEEcCCC-----------CccCHHHhhCCccceEEEecCCC
Q 013506 132 RDHRREQDVRIASQLFTLMDSN-----KPSKTSVPHVVVVASTNRV-----------DAIDPALRRSGRFDAEVEVTVPT 195 (441)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~vi~~~~~~-----------~~l~~~l~~~~r~~~~i~~~~p~ 195 (441)
...+..|...++.. ......++++.+|+|+|+. ..+++++.. ||. .+++..|+
T Consensus 194 --------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~ 262 (383)
T PHA02244 194 --------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDE 262 (383)
T ss_pred --------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCc
Confidence 34555666665431 1122245689999999983 367899998 996 78999988
Q ss_pred HHHH
Q 013506 196 AEER 199 (441)
Q Consensus 196 ~~~~ 199 (441)
..+.
T Consensus 263 ~~E~ 266 (383)
T PHA02244 263 KIEH 266 (383)
T ss_pred HHHH
Confidence 4443
No 203
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.37 E-value=2.5e-11 Score=109.99 Aligned_cols=165 Identities=24% Similarity=0.300 Sum_probs=103.3
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------cEE-------
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLT------- 82 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-------~~~------- 82 (441)
.|..|+|++++|..|.-.+..| ...+++|.|+||+||||+++.+++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3688999999999987665442 3468999999999999999999988732 110
Q ss_pred --EEccCc----------------cccccccchHH------HHHHHHHHHH-----hhhhcCCCeEEEEccccccccCCC
Q 013506 83 --VISPHS----------------VHKAHVGESEK------ALREAFSQAS-----SHALSGKPSVVFIDEIDALCPRRD 133 (441)
Q Consensus 83 --~v~~~~----------------~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~il~iDe~~~l~~~~~ 133 (441)
..++.. +.....+.+.. .+...+.... .......+.+||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L----- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL----- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC-----
Confidence 000000 00000000000 0111110000 0011123579999999987
Q ss_pred CCchhhHHHHHHHHHHHhcCC------C-CCCCCCeEEEEEEcCCCC-ccCHHHhhCCccceEEEecCCCH-HHHHHHHH
Q 013506 134 HRREQDVRIASQLFTLMDSNK------P-SKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVPTA-EERFEILK 204 (441)
Q Consensus 134 ~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~vi~~~~~~~-~l~~~l~~~~r~~~~i~~~~p~~-~~~~~il~ 204 (441)
+...+..|+..++... + ......++++++++|+.+ .+++.+.. ||...+.++.|+. +++.+|++
T Consensus 144 -----~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~ 216 (337)
T TIGR02030 144 -----EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVE 216 (337)
T ss_pred -----CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHH
Confidence 4467788888876532 0 111223688888888765 78999999 9998899998876 88888887
Q ss_pred HH
Q 013506 205 LY 206 (441)
Q Consensus 205 ~~ 206 (441)
..
T Consensus 217 ~~ 218 (337)
T TIGR02030 217 RR 218 (337)
T ss_pred hh
Confidence 64
No 204
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=5e-12 Score=121.28 Aligned_cols=117 Identities=16% Similarity=0.251 Sum_probs=82.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---------------- 350 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~---------------- 350 (441)
..++++.|++.+++.+...+.. + ..+..+||+||+|+||||+|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4688999999999998887752 1 22345699999999999999999999876
Q ss_pred --------ceEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 351 --------SFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 351 --------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++++++.++- ...+.++.+...+. .++..|+||||+|.+. ....+.||
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~NALL 139 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSFNALL 139 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHHHHHH
Confidence 3344444321 12445666666552 2456799999999884 24689999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+..+... ++|+++|
T Consensus 140 KtLEEPP~~v-~FILaTt 156 (702)
T PRK14960 140 KTLEEPPEHV-KFLFATT 156 (702)
T ss_pred HHHhcCCCCc-EEEEEEC
Confidence 9999765544 4444443
No 205
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.36 E-value=7e-11 Score=120.41 Aligned_cols=144 Identities=23% Similarity=0.281 Sum_probs=99.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc-------cccchHHHHHHHHHHHHhhhhcCCCeEEEEc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-------HVGESEKALREAFSQASSHALSGKPSVVFID 123 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 123 (441)
+-+++++|-|.||+|||+++.++|+..|...+.++.++..+. ...+....+ .+..+.--....++.++++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEee
Confidence 346789999999999999999999999999999987653211 111100000 01111111111246799999
Q ss_pred cccccccCCCCCchhhHHHHHHHHHHHhcCC--------CCCCCCCeEEEEEEcCCCC------ccCHHHhhCCccceEE
Q 013506 124 EIDALCPRRDHRREQDVRIASQLFTLMDSNK--------PSKTSVPHVVVVASTNRVD------AIDPALRRSGRFDAEV 189 (441)
Q Consensus 124 e~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~vi~~~~~~~------~l~~~l~~~~r~~~~i 189 (441)
|++.. ++.++..|...++... .....+|++.|+++-|+-+ .+|..+.. ||. ++
T Consensus 1619 EiNLa----------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1619 EINLA----------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhhh----------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 99754 4467777777776532 2345678999999988854 68889988 996 88
Q ss_pred EecCCCHHHHHHHHHHHhcc
Q 013506 190 EVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 190 ~~~~p~~~~~~~il~~~~~~ 209 (441)
++..++.+....|......+
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 99999999988887765543
No 206
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.35 E-value=4.5e-12 Score=129.74 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=80.7
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~~ 357 (441)
.++.+.|.+...+.+.+.+. .+...+++|+||||||||++|+.+|... +..++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 35566676665555555443 2345589999999999999999999876 478999999
Q ss_pred hhhh--hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccC
Q 013506 358 AELY--SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (441)
Q Consensus 358 ~~~~--~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~ 400 (441)
++++ .+|.|++++.++.+++.+....++||||||++.+++.++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~ 288 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGA 288 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCC
Confidence 8887 478999999999999999877889999999999986543
No 207
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.35 E-value=3.6e-12 Score=112.57 Aligned_cols=148 Identities=24% Similarity=0.366 Sum_probs=88.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE---EEccCccccccccchHHHHHHHHHHHH-------hhhhcCCCeEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT---VISPHSVHKAHVGESEKALREAFSQAS-------SHALSGKPSVVF 121 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~il~ 121 (441)
.++++||+||+|||||++++.....+...-+ .++.+.. .....+....+... .....++..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 5789999999999999999988877654322 2222211 11112222211110 011134557999
Q ss_pred EccccccccCCCCCchhhHHHHHHHHHH---HhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccceEEEecCCC
Q 013506 122 IDEIDALCPRRDHRREQDVRIASQLFTL---MDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAEVEVTVPT 195 (441)
Q Consensus 122 iDe~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~~~i~~~~p~ 195 (441)
|||++...++. .+.++..+.+++++.. ++..+..+....++.+++++++.. .+++++.| +|. ++.++.|+
T Consensus 106 iDDlN~p~~d~-ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~ 181 (272)
T PF12775_consen 106 IDDLNMPQPDK-YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPS 181 (272)
T ss_dssp EETTT-S---T-TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE----T
T ss_pred ecccCCCCCCC-CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCC
Confidence 99999655444 3334455666666653 233333344556789999998754 58899998 885 89999999
Q ss_pred HHHHHHHHHHHhcc
Q 013506 196 AEERFEILKLYTKK 209 (441)
Q Consensus 196 ~~~~~~il~~~~~~ 209 (441)
.+++..|+..++..
T Consensus 182 ~~sl~~If~~il~~ 195 (272)
T PF12775_consen 182 DESLNTIFSSILQS 195 (272)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999877654
No 208
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.7e-11 Score=119.91 Aligned_cols=164 Identities=22% Similarity=0.291 Sum_probs=115.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCC----CCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccCcccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLK----WPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHK 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~~~~~~~ 91 (441)
+.++|++++++.+.+++.. .+.|+. |....||.||+|+|||.+|+.+|..+. ..++.++++++..
T Consensus 491 ~rViGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME 562 (786)
T ss_pred cceeChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence 4699999999999999854 223333 335789999999999999999999986 6788998887654
Q ss_pred c------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC----
Q 013506 92 A------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP---- 155 (441)
Q Consensus 92 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 155 (441)
. |+|..+ -..+-...+. .+.+|+++||++.. ++++.+.|+..++....
T Consensus 563 kHsVSrLIGaPPGYVGyee--GG~LTEaVRr----~PySViLlDEIEKA----------HpdV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE--GGQLTEAVRR----KPYSVILLDEIEKA----------HPDVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHhCCCCCCceecc--ccchhHhhhc----CCCeEEEechhhhc----------CHHHHHHHHHHhcCCeeecCC
Confidence 3 122111 0111111221 23589999999976 44789999999986432
Q ss_pred -CCCCCCeEEEEEEcCCCC----------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHH
Q 013506 156 -SKTSVPHVVVVASTNRVD----------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 156 -~~~~~~~~~vi~~~~~~~----------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~ 206 (441)
......++++|+|+|--. .+.|.|+. |++.+|.|.+.+.+...+|+...
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 223345789999987521 23467777 88888999999999988888765
Q ss_pred hc
Q 013506 207 TK 208 (441)
Q Consensus 207 ~~ 208 (441)
+.
T Consensus 705 L~ 706 (786)
T COG0542 705 LN 706 (786)
T ss_pred HH
Confidence 54
No 209
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=7.1e-12 Score=118.34 Aligned_cols=117 Identities=17% Similarity=0.240 Sum_probs=83.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC---------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--------------- 350 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--------------- 350 (441)
..+++++.|++.+.+.+...+.. + +.+.++||+||+|+||||+|+++|..+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 34688999999999988876652 1 22447999999999999999999986632
Q ss_pred ---------ceEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 351 ---------SFFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 351 ---------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
+++++++++. ...++++.+.+.+.. +...|+||||++.+. ...++.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 3455555322 234567777777643 345699999999884 3568999
Q ss_pred HHHhcCCCCCCeEEEEe
Q 013506 418 LTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~ 434 (441)
|+.|+..++..++|+.+
T Consensus 137 LK~LEePp~~v~fIlat 153 (491)
T PRK14964 137 LKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHhCCCCCeEEEEEe
Confidence 99999866654444443
No 210
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=8e-12 Score=123.59 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=79.0
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCce-EEEECCCCCcHHHHHHHHHHHcCCce-------EEech-
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRG-ALLHGPPGCSKTTLAKAAAHAAEASF-------FSLSG- 357 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ll~Gp~GtGKTtla~~la~~~~~~~-------~~i~~- 357 (441)
..++++.|++.+.+.|...+... .-.| +||+||+||||||+|+++|+.+.+.- ..+..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 46889999999999888776531 1134 58999999999999999999987641 11110
Q ss_pred --------hhhhhhcc--CchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 358 --------AELYSMYV--GESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 358 --------~~~~~~~~--g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.+++...- ......+|.+.+.+. .+...|+||||++++- ...++.||+.|+.
T Consensus 80 ~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLKtLEE 145 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLKTLEE 145 (944)
T ss_pred HHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHHHHhc
Confidence 00100000 012344555555443 3456799999999984 4678999999997
Q ss_pred CCCCCeEEEE
Q 013506 424 LEQAKVIIYP 433 (441)
Q Consensus 424 ~~~~~~v~~~ 433 (441)
.+...+.|++
T Consensus 146 PP~~vrFILa 155 (944)
T PRK14949 146 PPEHVKFLLA 155 (944)
T ss_pred cCCCeEEEEE
Confidence 5555554444
No 211
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.33 E-value=6e-12 Score=107.73 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=83.0
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC------ceEEech
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA------SFFSLSG 357 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~------~~~~i~~ 357 (441)
.....++++.+++.+.+.+...+.. +-..|+||+||||||||+.|+++|+.+.+ .+.+.+.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna 96 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA 96 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc
Confidence 3345688899999998888876652 22348999999999999999999999865 3455666
Q ss_pred hhhhhhccCc-hHHHHHHHHHHH------HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeE
Q 013506 358 AELYSMYVGE-SEALLRNTFQRA------RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI 430 (441)
Q Consensus 358 ~~~~~~~~g~-~~~~~~~~~~~a------~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v 430 (441)
++..+.-++. ..++..++...- -..++.|++|||+|.+. ...-++|.+.||++....+.
T Consensus 97 SderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~~s~~trF 162 (346)
T KOG0989|consen 97 SDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMEDFSRTTRF 162 (346)
T ss_pred cccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhccccceEE
Confidence 6665532221 112222222211 01233699999999985 35679999999995555554
Q ss_pred EEEe
Q 013506 431 IYPI 434 (441)
Q Consensus 431 ~~~~ 434 (441)
+++.
T Consensus 163 iLIc 166 (346)
T KOG0989|consen 163 ILIC 166 (346)
T ss_pred EEEc
Confidence 4443
No 212
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.3e-12 Score=109.63 Aligned_cols=138 Identities=17% Similarity=0.292 Sum_probs=95.7
Q ss_pred ccccc-ccchHHHHHHHHHHHHhhccCchHHHh-cCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-
Q 013506 16 KAEEA-IGGNRAAVEALRELITFPLLYSSQAQK-LGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK- 91 (441)
Q Consensus 16 ~~~~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~- 91 (441)
.-|++ ++|+|.+|+.|.-++..++.+-..... -.+ -...+|||+||+|||||.||+.+|+.++.||...++..+..
T Consensus 57 ~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 57 AHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred HHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 34455 899999999998877554332111111 011 13478999999999999999999999999999999888764
Q ss_pred ccccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcC
Q 013506 92 AHVGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSN 153 (441)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~ 153 (441)
.++|+..+. +..+++.+..-....+.+|++|||+|.+....+.. .-...-+++.|+..+++.
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 466665554 33444544433334457899999999998765321 123456788999999873
No 213
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.33 E-value=5.3e-11 Score=121.30 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=129.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccc---
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA--- 92 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~--- 92 (441)
+.++|++.+++.+.+.+......-.. .-+|...++|+||+|+|||++|+.+++.+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46999999999999988653211000 01222358999999999999999999988 346777776654322
Q ss_pred ---------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCC
Q 013506 93 ---------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKT 158 (441)
Q Consensus 93 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~ 158 (441)
+.+... ...+..... ..+.+||+|||++.+ +..+.+.|+..++.... ...
T Consensus 642 ~~l~g~~~gyvg~~~---~g~L~~~v~---~~p~svvllDEieka----------~~~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGE---GGVLTEAVR---RKPYSVVLLDEVEKA----------HPDVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCcccccc---cchHHHHHH---hCCCcEEEEechhhc----------CHHHHHHHHHHhhcceeecCCCcEE
Confidence 111111 011111111 134689999999876 33667778888775431 112
Q ss_pred CCCeEEEEEEcCCCC-----------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc
Q 013506 159 SVPHVVVVASTNRVD-----------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~-----------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
...+.++|.|+|... .+.|++.+ |++ ++.|.+++.++..+|+...+..
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 234678888887421 14567777 886 8999999999999998765543
Q ss_pred C--------CCCCccc---HHHHHHHCCC--CCHHHHHHHHHHHHHHHHH
Q 013506 210 V--------PLDANVD---LEAIATSCNG--YVGADLEALCREATMSAVK 246 (441)
Q Consensus 210 ~--------~~~~~~~---~~~l~~~~~g--~~~~~i~~l~~~a~~~~~~ 246 (441)
. ......+ .+.++....+ +..|.++.+++......+.
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELS 832 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHH
Confidence 2 2222222 5566666543 5688888888775554443
No 214
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=6.5e-11 Score=121.60 Aligned_cols=209 Identities=18% Similarity=0.217 Sum_probs=133.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV- 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~- 94 (441)
+.++|++.+++.+.+.+...... . +-.-+|...++|+||+|||||++|+.++..+ +.+++.++++.+.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g--l--~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG--L--SDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc--C--CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 56999999999999988652110 0 0011244679999999999999999999987 35678888766543211
Q ss_pred ----cchHH-----HHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCC
Q 013506 95 ----GESEK-----ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSV 160 (441)
Q Consensus 95 ----~~~~~-----~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ 160 (441)
+.... ....+...... ...+||++||++.+ +..++..|+..++..... ....
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~----~p~~vlllDeieka----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRR----KPYSVVLFDEVEKA----------HPDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHc----CCCcEEEEeccccC----------CHHHHHHHHHHHhcCceecCCCeEEec
Confidence 00000 00111111111 23579999999977 446788888888654311 1223
Q ss_pred CeEEEEEEcCCCC-------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc------
Q 013506 161 PHVVVVASTNRVD-------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK------ 209 (441)
Q Consensus 161 ~~~~vi~~~~~~~-------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~------ 209 (441)
.+.+||+|+|... .+.|.|.. |++.++.|.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4678899988721 13466666 88889999999999999988755432
Q ss_pred -CCC--CCcc-cHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHh
Q 013506 210 -VPL--DANV-DLEAIATSCN--GYVGADLEALCREATMSAVKR 247 (441)
Q Consensus 210 -~~~--~~~~-~~~~l~~~~~--g~~~~~i~~l~~~a~~~~~~~ 247 (441)
... ..+. ..+.++.... .+..+.++++++......+..
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 111 1111 2555666533 577888988888776655443
No 215
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.33 E-value=8.7e-11 Score=99.03 Aligned_cols=131 Identities=19% Similarity=0.287 Sum_probs=91.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEccCccccccccchHHHHHHHHHH
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFSQ 107 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 107 (441)
.++.+||+||+|+|||++++.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 35679999999999999999999987432 11111110 0 1122345555555
Q ss_pred HHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccce
Q 013506 108 ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA 187 (441)
Q Consensus 108 ~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~ 187 (441)
+......+...|++|||+|.+ ....++.|+..++.... +..+|.+++.+..+.+.+.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l----------~~~~~~~Ll~~le~~~~------~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERM----------NEAAANALLKTLEEPPP------NTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhh----------CHHHHHHHHHHhcCCCC------CeEEEEEECChHhChHHHHh--hcE-
Confidence 554444456789999999987 33456778888866322 35566667777889999998 775
Q ss_pred EEEecCCCHHHHHHHHHHH
Q 013506 188 EVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 188 ~i~~~~p~~~~~~~il~~~ 206 (441)
.+.+++|+.++..+++...
T Consensus 149 ~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc
Confidence 8999999999998888765
No 216
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=2.4e-11 Score=115.33 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=107.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.++++|+|++|+|||+|++++++.+ +..++++++.++............ ..+...... ....++|+|||++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~--~~~~dvLiIDDiq~ 217 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNE--ICQNDVLIIDDVQF 217 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHH--hccCCEEEEecccc
Confidence 3679999999999999999999865 356777877665543322221100 111111111 12467999999987
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---ccCHHHhhCCcc--ceEEEecCCCHHHHHHH
Q 013506 128 LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---AIDPALRRSGRF--DAEVEVTVPTAEERFEI 202 (441)
Q Consensus 128 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~--~~~i~~~~p~~~~~~~i 202 (441)
+... ......++.+++...... ..+|+++..+|. .+++++.+ || ..++.+.+|+.+++.+|
T Consensus 218 l~~k--------~~~~e~lf~l~N~~~~~~----k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 218 LSYK--------EKTNEIFFTIFNNFIEND----KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred ccCC--------HHHHHHHHHHHHHHHHcC----CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHH
Confidence 7321 123444444444332211 124444444444 45789998 66 47889999999999999
Q ss_pred HHHHhccCCC---CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 203 LKLYTKKVPL---DANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 203 l~~~~~~~~~---~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
++..+..... -.+..++.++..+.| +.|.+..++......+
T Consensus 284 L~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 284 IKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 9988876543 122236667776664 6777777777665433
No 217
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.4e-11 Score=108.70 Aligned_cols=191 Identities=20% Similarity=0.297 Sum_probs=120.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
..++++||||+|+|||+|++++++.. +..+++++...+....+......-..-|+... .-++++|||++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y------~~dlllIDDiq 185 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY------SLDLLLIDDIQ 185 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh------ccCeeeechHh
Confidence 45789999999999999999998876 23467777666554433322221122233222 25699999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc---CHHHhhCCccc--eEEEecCCCHHHHHH
Q 013506 127 ALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI---DPALRRSGRFD--AEVEVTVPTAEERFE 201 (441)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l---~~~l~~~~r~~--~~i~~~~p~~~~~~~ 201 (441)
.+.... .....++..+....... +-+++++-..|..+ .+++.+ ||. .++.+.+|+.+.|..
T Consensus 186 ~l~gk~--------~~qeefFh~FN~l~~~~----kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 186 FLAGKE--------RTQEEFFHTFNALLENG----KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred HhcCCh--------hHHHHHHHHHHHHHhcC----CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHH
Confidence 885432 34555666655544322 23555555566644 589999 664 678999999999999
Q ss_pred HHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 202 ILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 202 il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
|++..........+.+ ...++.... -+.+++...+......+..... .++.+.+...+...
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~---------~iTi~~v~e~L~~~ 313 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR---------AITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc---------cCcHHHHHHHHHHh
Confidence 9999777766655444 555566554 4566776666665554443322 35555555544433
No 218
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.32 E-value=5.6e-11 Score=112.96 Aligned_cols=206 Identities=20% Similarity=0.310 Sum_probs=128.3
Q ss_pred cccccccchHHHHHHHHHHHHh--hccCchHHHhc-------------------CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 013506 16 KAEEAIGGNRAAVEALRELITF--PLLYSSQAQKL-------------------GLKWPRGLLLYGPPGTGKTSLVRAVV 74 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~--~~~~~~~~~~~-------------------~~~~~~~vll~Gp~GtGKT~l~~~l~ 74 (441)
..|-+++|-|.+-+.+-.|+.. |--+.+.+.++ +.++.+-+||+||||-||||||+.+|
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 6788999998888777777631 11111111121 23455778999999999999999999
Q ss_pred HHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcC-
Q 013506 75 RECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN- 153 (441)
Q Consensus 75 ~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~- 153 (441)
+..|..++++|+++-... ......+..+.+....-...++|.+|+|||||.- ....++.++..+...
T Consensus 348 kqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------~~~~Vdvilslv~a~~ 415 (877)
T KOG1969|consen 348 KQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------PRAAVDVILSLVKATN 415 (877)
T ss_pred HhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC----------cHHHHHHHHHHHHhhc
Confidence 999999999999773321 2223334333333222222367999999999843 234556666555421
Q ss_pred -----CCCC---------CCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cH
Q 013506 154 -----KPSK---------TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DL 218 (441)
Q Consensus 154 -----~~~~---------~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~ 218 (441)
+... ...-.--||+.||.... |+++.-.-|..+++|.+|....+.+-++.++.......+. .+
T Consensus 416 k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL 493 (877)
T KOG1969|consen 416 KQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKAL 493 (877)
T ss_pred chhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHH
Confidence 1110 00112357788888653 4443222566789999999999888888888776655442 25
Q ss_pred HHHHHHCCCCCHHHHHHHHHH
Q 013506 219 EAIATSCNGYVGADLEALCRE 239 (441)
Q Consensus 219 ~~l~~~~~g~~~~~i~~l~~~ 239 (441)
..+.+.++ .|++.++..
T Consensus 494 ~~L~el~~----~DIRsCINt 510 (877)
T KOG1969|consen 494 NALCELTQ----NDIRSCINT 510 (877)
T ss_pred HHHHHHhc----chHHHHHHH
Confidence 55555555 355555543
No 219
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=3.7e-12 Score=107.81 Aligned_cols=96 Identities=26% Similarity=0.347 Sum_probs=73.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...+.+..|++++|+.+.-+++.+.... ....|+||+||||.||||+|..+|.+++.++-..++.-+-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 3467888999999999988876433322 34568999999999999999999999999887777765432
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
..++..++... ....|+|||||+.+.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~ 117 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSP 117 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcCh
Confidence 33455566553 4557999999999964
No 220
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.32 E-value=1.2e-10 Score=119.26 Aligned_cols=209 Identities=17% Similarity=0.226 Sum_probs=128.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV- 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~- 94 (441)
+.++|++.+++.|.+.+....... .-.-+|...++|+||+|||||++|++++..+ +.+++.+++..+.....
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl----~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGL----SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcc----cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 468999999999999885421100 0001122479999999999999999999877 34677787766543210
Q ss_pred ----cch----HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCC
Q 013506 95 ----GES----EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVP 161 (441)
Q Consensus 95 ----~~~----~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 161 (441)
+.. ...-...+..... ..+.++|+|||++.+ +......|+..++..... .....
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka----------~~~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKA----------HPDVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhC----------CHHHHHHHHHHHhhCceecCCceEEeec
Confidence 000 0000011111111 123479999999876 346778888888654211 12233
Q ss_pred eEEEEEEcCCCC-------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC------
Q 013506 162 HVVVVASTNRVD-------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV------ 210 (441)
Q Consensus 162 ~~~vi~~~~~~~-------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~------ 210 (441)
+.++|+|+|... .+.|++.. |++.++.|.+++.+...+|+...+...
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 567888888621 24567887 998899999999999999887665432
Q ss_pred -CCCCccc---HHHHHHHCC--CCCHHHHHHHHHHHHHHHHH
Q 013506 211 -PLDANVD---LEAIATSCN--GYVGADLEALCREATMSAVK 246 (441)
Q Consensus 211 -~~~~~~~---~~~l~~~~~--g~~~~~i~~l~~~a~~~~~~ 246 (441)
......+ +..++.... .+..|.++.+++..+...+.
T Consensus 789 ~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la 830 (857)
T PRK10865 789 RGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLA 830 (857)
T ss_pred CCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHH
Confidence 2222222 444444322 24578888888776655444
No 221
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.32 E-value=1e-12 Score=108.44 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=70.6
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE----EEEccC-----
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL----TVISPH----- 87 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~----~~v~~~----- 87 (441)
+|++|+|++.+|++|.-+..- ++++|++||||||||++|+.+...+..-- .++...
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 578999999999999977632 57999999999999999999998774211 111000
Q ss_pred -----------ccccccccchHHHHHHHHHHHHh----hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 88 -----------SVHKAHVGESEKALREAFSQASS----HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 88 -----------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
-+....... ....++..... ........|||+||+..+ +..+++.|...++.
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~---s~~~liGgg~~~~PGeislAh~GVLflDE~~ef----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSA---SEAALIGGGRPPRPGEISLAHRGVLFLDELNEF----------DRSVLDALRQPLED 132 (206)
T ss_dssp -S---EEEE---EEEE-TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-----------HHHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCc---CHHHHhCCCcCCCcCHHHHhcCCEEEechhhhc----------CHHHHHHHHHHHHC
Confidence 000000001 11111111100 000112469999999755 66788888888876
Q ss_pred CCCC-------CCCCCeEEEEEEcCC
Q 013506 153 NKPS-------KTSVPHVVVVASTNR 171 (441)
Q Consensus 153 ~~~~-------~~~~~~~~vi~~~~~ 171 (441)
.... ..-..++++|+|+|+
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 3221 112235789999887
No 222
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=1.2e-11 Score=114.75 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=87.9
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE------Ee------
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF------SL------ 355 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~------~i------ 355 (441)
.|+++.|++.+++.+...+.....+... .+...+..+||+||+|+|||++|+.+|..+.+.-- .+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAA---AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccc---cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 4778999999999999988754432211 22234556899999999999999999998755310 00
Q ss_pred ---chhhh--hhhc-cCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 356 ---SGAEL--YSMY-VGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 356 ---~~~~~--~~~~-~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
+-+|+ +... ..-..+.++.+++.+.. +...|+||||+|.+.+ ...|.||+.|+..+
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep~ 145 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEPP 145 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcCC
Confidence 00111 0000 01123457778777753 3456999999999842 45699999999866
Q ss_pred CCCeEEEEeeeee
Q 013506 426 QAKVIIYPISFIF 438 (441)
Q Consensus 426 ~~~~v~~~~~~~~ 438 (441)
....+|+++++..
T Consensus 146 ~~~~fIL~a~~~~ 158 (394)
T PRK07940 146 PRTVWLLCAPSPE 158 (394)
T ss_pred CCCeEEEEECChH
Confidence 6655666555543
No 223
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.31 E-value=2.7e-11 Score=111.32 Aligned_cols=159 Identities=24% Similarity=0.299 Sum_probs=101.5
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc--cccch
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA--HVGES 97 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~--~~~~~ 97 (441)
.++|.++++..+...+. .+.+++|.||||||||++++.+|+.++.+++.+.+...... ..|..
T Consensus 25 ~~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 37777777766665543 46899999999999999999999999999999988754322 11211
Q ss_pred HHHHH----HHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----C-CCCCCeEEEEE
Q 013506 98 EKALR----EAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----S-KTSVPHVVVVA 167 (441)
Q Consensus 98 ~~~~~----~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~-~~~~~~~~vi~ 167 (441)
.-... ..+.............++++|||+.. +...+..|+..++.... . ..-...+++++
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRA----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccceEEEEeccccC----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 11100 00000000000000139999999976 34677888888765221 1 22234578888
Q ss_pred EcCCC-----CccCHHHhhCCccceEEEecCCC-HHHHHHHHHH
Q 013506 168 STNRV-----DAIDPALRRSGRFDAEVEVTVPT-AEERFEILKL 205 (441)
Q Consensus 168 ~~~~~-----~~l~~~l~~~~r~~~~i~~~~p~-~~~~~~il~~ 205 (441)
|.|+. ..+++++.+ ||...+.++.|+ ..+...++..
T Consensus 160 T~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 160 TQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred ccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHh
Confidence 88953 467899999 997789999994 4444444443
No 224
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=1.6e-10 Score=110.75 Aligned_cols=30 Identities=30% Similarity=0.416 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+-|+|++|+||||+.+.+++..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356788999999999999999999999877
No 225
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=126.06 Aligned_cols=138 Identities=24% Similarity=0.306 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc----------ccccchHHHHHHHHHHHHhhhhcCCCeEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK----------AHVGESEKALREAFSQASSHALSGKPSVVF 121 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 121 (441)
...++|+.||+.+|||+.+.++|++.+..++.++.++-.+ ...|...- -..++-.+.. ++-+++
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsF-kEGvLVeAlR-----~GyWIV 960 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSF-KEGVLVEALR-----RGYWIV 960 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceee-ehhHHHHHHh-----cCcEEE
Confidence 3468999999999999999999999999999998764321 11111110 1112222222 367999
Q ss_pred EccccccccCCCCCchhhHHHHHHHHHHHhcCCC--------CCCCCCeEEEEEEcCCCC------ccCHHHhhCCccce
Q 013506 122 IDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP--------SKTSVPHVVVVASTNRVD------AIDPALRRSGRFDA 187 (441)
Q Consensus 122 iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~vi~~~~~~~------~l~~~l~~~~r~~~ 187 (441)
+||++.. +.+++..|.++++.... ....+|++.+++|-|+|. .++.+++. ||-
T Consensus 961 LDELNLA----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl- 1027 (4600)
T COG5271 961 LDELNLA----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL- 1027 (4600)
T ss_pred eeccccC----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-
Confidence 9999754 44678888888876432 245678999999999986 56788888 995
Q ss_pred EEEecCCCHHHHHHHHHHHhc
Q 013506 188 EVEVTVPTAEERFEILKLYTK 208 (441)
Q Consensus 188 ~i~~~~p~~~~~~~il~~~~~ 208 (441)
.++|..-..+++..|+...+.
T Consensus 1028 E~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1028 EMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred hhhcccCcHHHHHHHHhccCc
Confidence 788999899999998876554
No 226
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.3e-11 Score=120.09 Aligned_cols=117 Identities=16% Similarity=0.254 Sum_probs=80.8
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..++++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|+.+.+.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4688999999999988877653 1 112235899999999999999999998763
Q ss_pred ---------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 352 ---------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 352 ---------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
+++++..+- ...+.++++.+.+. .+...|+||||+|++- ....|.||
T Consensus 81 ~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NALL 140 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 140 (647)
T ss_pred HHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHHH
Confidence 233333210 12344566555543 3456799999999984 35689999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+......+ +|++||
T Consensus 141 KtLEEPp~~v~-FIL~Tt 157 (647)
T PRK07994 141 KTLEEPPEHVK-FLLATT 157 (647)
T ss_pred HHHHcCCCCeE-EEEecC
Confidence 99997555444 444444
No 227
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=6.1e-13 Score=106.37 Aligned_cols=119 Identities=26% Similarity=0.400 Sum_probs=72.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc--cccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccccC
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA--HVGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~ 131 (441)
+|+|+||||||||++++.++..++.++..+++...... ..+..... ....+..........++.+++|||+|..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a--- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRA--- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccC---
Confidence 68999999999999999999999999888876553211 00000000 0000000000000013789999999976
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCC-------CCCCC------eEEEEEEcCCCC----ccCHHHhhCCcc
Q 013506 132 RDHRREQDVRIASQLFTLMDSNKPS-------KTSVP------HVVVVASTNRVD----AIDPALRRSGRF 185 (441)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~------~~~vi~~~~~~~----~l~~~l~~~~r~ 185 (441)
+..++..|+..++..... ..... ++.+|+|+|+.. .+++++.+ ||
T Consensus 78 -------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 346777888877653211 00111 489999999988 89999998 86
No 228
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.4e-11 Score=117.07 Aligned_cols=117 Identities=19% Similarity=0.275 Sum_probs=80.7
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---------------- 350 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~---------------- 350 (441)
..++++.|++++.+.+...+.. + ..+.+++|+|||||||||+|+++|..+.+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~-----------~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK-----------N-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 4688899999998888776653 1 12345899999999999999999998865
Q ss_pred --------ceEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 351 --------SFFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 351 --------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
.++.++.+.. .....++++.+.+.. +...|+||||++.+. ...++.||
T Consensus 79 ~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~LL 138 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNALL 138 (472)
T ss_pred HHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHHHH
Confidence 2444443221 123456666665542 345699999999884 24578999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+...+ ..++|+++|
T Consensus 139 k~LE~p~~-~vv~Ilatt 155 (472)
T PRK14962 139 KTLEEPPS-HVVFVLATT 155 (472)
T ss_pred HHHHhCCC-cEEEEEEeC
Confidence 99997544 445555554
No 229
>PRK09087 hypothetical protein; Validated
Probab=99.29 E-value=1.4e-10 Score=99.89 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=90.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~ 132 (441)
...++|+||+|||||||+++++...+.. +++...+.. ....... ..+|+|||++.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~-----------~~~~~~~-------~~~l~iDDi~~~~~-- 101 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS-----------DAANAAA-------EGPVLIEDIDAGGF-- 101 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch-----------HHHHhhh-------cCeEEEECCCCCCC--
Confidence 3569999999999999999999876433 333322111 1111111 24899999986521
Q ss_pred CCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc---cCHHHhhCCcc--ceEEEecCCCHHHHHHHHHHHh
Q 013506 133 DHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA---IDPALRRSGRF--DAEVEVTVPTAEERFEILKLYT 207 (441)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~---l~~~l~~~~r~--~~~i~~~~p~~~~~~~il~~~~ 207 (441)
..+ .++..++...... +.++++++..+.. ..+++++ |+ ..++.+.+|+.+++.++++..+
T Consensus 102 ------~~~---~lf~l~n~~~~~g----~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 102 ------DET---GLFHLINSVRQAG----TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred ------CHH---HHHHHHHHHHhCC----CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHH
Confidence 112 2344333322111 2466665554442 3577888 66 3689999999999999999988
Q ss_pred ccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 208 KKVPLDANV-DLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 208 ~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
.......+. .++.++....+ +.+.+..++...
T Consensus 167 ~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L 199 (226)
T PRK09087 167 ADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRL 199 (226)
T ss_pred HHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 776554333 36677776662 334444433333
No 230
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=2.5e-11 Score=116.38 Aligned_cols=118 Identities=15% Similarity=0.245 Sum_probs=79.7
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---------------- 350 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~---------------- 350 (441)
..++++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|..+.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4688899999999888877653 1 11224789999999999999999998864
Q ss_pred --------ceEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 351 --------SFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 351 --------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++++++.... . ..+.++.+.+.+. .+...|+||||+|++. ....+.||
T Consensus 81 ~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naLL 140 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNALL 140 (546)
T ss_pred HHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHHH
Confidence 2223322111 1 1234555555543 2456799999999874 35789999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+..++..++|+++++
T Consensus 141 K~LEepp~~v~fIL~Ttd 158 (546)
T PRK14957 141 KTLEEPPEYVKFILATTD 158 (546)
T ss_pred HHHhcCCCCceEEEEECC
Confidence 999975555545544443
No 231
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.5e-11 Score=104.25 Aligned_cols=86 Identities=28% Similarity=0.420 Sum_probs=64.0
Q ss_pred CeEEEEccccccccCCCCCc--hhhHHHHHHHHHHHhcCCCC----CCCCCeEEEEEEc----CCCCccCHHHhhCCccc
Q 013506 117 PSVVFIDEIDALCPRRDHRR--EQDVRIASQLFTLMDSNKPS----KTSVPHVVVVAST----NRVDAIDPALRRSGRFD 186 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~--~~~~~~~~~l~~~~~~~~~~----~~~~~~~~vi~~~----~~~~~l~~~l~~~~r~~ 186 (441)
.+|+||||||.++...+.++ -.-..++..|+.+.++.... ....++++||++. ..|..|-|.++- ||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCc
Confidence 45999999999988775332 22335677888888764322 1233578888874 567788899986 999
Q ss_pred eEEEecCCCHHHHHHHHH
Q 013506 187 AEVEVTVPTAEERFEILK 204 (441)
Q Consensus 187 ~~i~~~~p~~~~~~~il~ 204 (441)
..+++...+.+...+|+.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999988874
No 232
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.6e-11 Score=108.39 Aligned_cols=100 Identities=31% Similarity=0.459 Sum_probs=79.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccCch-HHHHHHHHHHHH----hcCCeEEEEeccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGES-EALLRNTFQRAR----LAAPSIIFFDEADVVGA 397 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g~~-~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~ 397 (441)
..++||.||+|+|||.+|+-||+.++.++...+++.+-. -|+|+. |-.+.+++..|. +....|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 358999999999999999999999999999999998753 599998 556788888773 34455999999999985
Q ss_pred ccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 398 KRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.-.+-....+--++.+-..||+.++|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 43322222344467889999999998
No 233
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.28 E-value=3e-10 Score=104.73 Aligned_cols=30 Identities=33% Similarity=0.416 Sum_probs=25.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+++.+...+.++||||+||||+.+++-..+
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 466677789999999999999999887655
No 234
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.5e-10 Score=106.99 Aligned_cols=154 Identities=27% Similarity=0.380 Sum_probs=106.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--------------------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-------------------- 78 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~-------------------- 78 (441)
++++|.+.+...+..+.... + .-++.+||+||||+|||++|..+|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 35778888888877776421 0 1233599999999999999999999886
Q ss_pred ----CcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC
Q 013506 79 ----AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (441)
Q Consensus 79 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (441)
..++++++++..... .....++.+.+........++..|++|||+|.| .......++..++...
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~m----------t~~A~nallk~lEep~ 137 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL----------TEDAANALLKTLEEPP 137 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH----------hHHHHHHHHHHhccCC
Confidence 356667666543322 123334444333333222345689999999988 4477888888888754
Q ss_pred CCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHH
Q 013506 155 PSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (441)
Q Consensus 155 ~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~ 204 (441)
. ++.++.+||.++.+-+.+++ |+. .+.|++|+........+
T Consensus 138 ~------~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 138 K------NTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred C------CeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 3 57888899999999888988 885 78888866555544433
No 235
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.7e-10 Score=105.54 Aligned_cols=152 Identities=17% Similarity=0.226 Sum_probs=108.0
Q ss_pred cccccc-hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 013506 18 EEAIGG-NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------- 80 (441)
Q Consensus 18 ~~~i~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------- 80 (441)
++.|+| ++.+++.|...+... ..++.+||+||+|+||+++|+.+++.+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 367888 999999999887431 245678999999999999999999887421
Q ss_pred --------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 81 --------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 81 --------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
+..+... .. ......++.+..........+...|++|||+|.+ +....+.|+..++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~----------~~~a~NaLLK~LEE 136 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM----------TASAANSLLKFLEE 136 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh----------CHHHHHHHHHHhcC
Confidence 1111111 00 0112345555444443333455679999999987 44678889999987
Q ss_pred CCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHH
Q 013506 153 NKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 153 ~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~ 205 (441)
... ++++|.+++.+..+.+.+++ |+. .+.|++|+.++..+++..
T Consensus 137 Pp~------~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 PSG------GTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC------CceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 432 56777788888899999998 885 899999999998777764
No 236
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=2.2e-11 Score=113.10 Aligned_cols=119 Identities=18% Similarity=0.281 Sum_probs=81.2
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..++++.|++.+.+.+...+.. + ..+..++|+||+|+||||+|+++|+.+.+.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4688899999999988877642 1 112246899999999999999999988642
Q ss_pred ---------eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 352 ---------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 352 ---------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++.++.++ ....+.++.+...+.. +...|+||||+|++. ....+.||
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLL 140 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALL 140 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHH
Confidence 12222111 1223556777766542 334699999999883 25678999
Q ss_pred HHhcCCCCCCeEEEEeeee
Q 013506 419 TEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~~ 437 (441)
+.|+..+....+|+++++.
T Consensus 141 k~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 141 KTLEEPPQHIKFILATTDV 159 (363)
T ss_pred HHHhcCCCCeEEEEEcCCh
Confidence 9999866655555555443
No 237
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.27 E-value=2.5e-11 Score=122.21 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=82.8
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh--------
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-------- 362 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-------- 362 (441)
+..|++.+|+.+.+++..... ....++..++|+||||+|||++++.+|+.++.+++.++.....+
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 467888999988877653111 12234557899999999999999999999999998887654322
Q ss_pred -hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 363 -MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 363 -~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.|+|.....+.+.+..+...+| |+||||+|++.+...+ ...+.||..||.
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~ 446 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDP 446 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhcc
Confidence 3666666666666777665555 9999999999754221 235788888874
No 238
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=4.6e-10 Score=101.89 Aligned_cols=155 Identities=20% Similarity=0.280 Sum_probs=107.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEccCccccccccchHHHHHHHHHH
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFSQ 107 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 107 (441)
.++.+||+||+|+|||++|+.+|+.+... ++.+....- ........++++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHHHH
Confidence 45789999999999999999999987431 122211100 001223456666665
Q ss_pred HHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccce
Q 013506 108 ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA 187 (441)
Q Consensus 108 ~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~ 187 (441)
.......+...|++||++|.| +....+.|++.++... +++++|.+|+.++.+.|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m----------~~~aaNaLLK~LEEPp------~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAM----------NRNAANALLKSLEEPS------GDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhC----------CHHHHHHHHHHHhCCC------CCeEEEEEECChhhCcHHHHh--hce-
Confidence 555544556779999999988 5578899999998743 257888889999999999999 986
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHH
Q 013506 188 EVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGA 231 (441)
Q Consensus 188 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 231 (441)
.+.|++|+.++..+.+..... ...+.....++....|-...
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 699999999998888775431 11222234555555654433
No 239
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=5.1e-11 Score=115.41 Aligned_cols=116 Identities=23% Similarity=0.317 Sum_probs=79.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCce-EEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRG-ALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
..|+++.|++.+.+.+...+.. + ...| +||+||+||||||+|+++|..+.+.
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~-----------~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDA-----------G--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc-----------C--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 4688999999999998887753 1 1234 6899999999999999999987642
Q ss_pred ------------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHH
Q 013506 352 ------------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (441)
Q Consensus 352 ------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~ 415 (441)
+++++.+.. .....++++.+.+. .....|+||||++.+. ....+
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 222222111 12344555544442 3456799999999984 24789
Q ss_pred HHHHHhcCCCCCCeEEEEeee
Q 013506 416 TLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 416 ~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.||+.|+..+. ..++|+++|
T Consensus 137 ALLK~LEEpp~-~~~fIL~tt 156 (584)
T PRK14952 137 ALLKIVEEPPE-HLIFIFATT 156 (584)
T ss_pred HHHHHHhcCCC-CeEEEEEeC
Confidence 99999997555 444444443
No 240
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=4e-11 Score=114.30 Aligned_cols=125 Identities=20% Similarity=0.246 Sum_probs=83.3
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE-----------
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF----------- 353 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~----------- 353 (441)
....+.++.|++.+.+.+...+.. -..+.++||+||+||||||+|+++|+.+.+...
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 345788899999999888776542 122457899999999999999999999865311
Q ss_pred Eech---------hhhhhh--ccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 354 SLSG---------AELYSM--YVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 354 ~i~~---------~~~~~~--~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
.+.. .+++.. -.......++.+++.+.. +...|+||||++.+. ...++.||
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~naLL 149 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAFNALL 149 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHHHHHH
Confidence 0000 011100 011235677888887753 345699999999883 25689999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+..+. ..++|+++|
T Consensus 150 k~LEepp~-~~vfI~aTt 166 (507)
T PRK06645 150 KTLEEPPP-HIIFIFATT 166 (507)
T ss_pred HHHhhcCC-CEEEEEEeC
Confidence 99997444 445555554
No 241
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=3.6e-11 Score=120.98 Aligned_cols=117 Identities=22% Similarity=0.302 Sum_probs=80.1
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
.+|.++.|++.+++.|...+.. + .....+||+||+||||||+|+++|+.+.|.
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 4688999999999988887753 1 112237999999999999999999999652
Q ss_pred -----------eEEechhhhhhhccCchHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHH
Q 013506 352 -----------FFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLST 416 (441)
Q Consensus 352 -----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ 416 (441)
+++++..+.. ....++++.+.+ ......|+||||+|++. ....|.
T Consensus 80 ~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~Na 139 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNA 139 (824)
T ss_pred HHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHH
Confidence 2222221111 133445544333 34567799999999994 356899
Q ss_pred HHHHhcCCCCCCeEEEEee
Q 013506 417 LLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 417 ll~~l~~~~~~~~v~~~~~ 435 (441)
||+.|+......++|++++
T Consensus 140 LLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 140 LLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred HHHHHhCCCCCeEEEEEeC
Confidence 9999998666555554443
No 242
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.6e-11 Score=116.85 Aligned_cols=117 Identities=14% Similarity=0.240 Sum_probs=80.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..++++.|++.+.+.|...+... ..+..+||+||+|+||||+|+++|+.+.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 46888999999999888877631 112235999999999999999999998752
Q ss_pred --------------eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHH
Q 013506 352 --------------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERL 413 (441)
Q Consensus 352 --------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~ 413 (441)
+++++..+ ....+.++++.+.+.. +...|+||||+|.+. ...
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 22222211 1123467777766542 345799999999984 255
Q ss_pred HHHHHHHhcCCCCCCeEEEEeee
Q 013506 414 LSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 414 ~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+|.||+.|+..+.. .++|++||
T Consensus 141 ~NaLLKtLEEPP~~-~~fIL~Tt 162 (618)
T PRK14951 141 FNAMLKTLEEPPEY-LKFVLATT 162 (618)
T ss_pred HHHHHHhcccCCCC-eEEEEEEC
Confidence 89999999975544 44455544
No 243
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=5e-10 Score=94.52 Aligned_cols=184 Identities=22% Similarity=0.241 Sum_probs=123.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~-------------- 81 (441)
..++.+.+.++....+...... ..-.|+++|||+|+||-|.+-++.+++-.+.
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 5567888888888888876532 1125899999999999999999998873210
Q ss_pred ----EEE---ccCcccc---ccccchHH-HHHHHHHHHHhhhh-----cCCCeEEEEccccccccCCCCCchhhHHHHHH
Q 013506 82 ----TVI---SPHSVHK---AHVGESEK-ALREAFSQASSHAL-----SGKPSVVFIDEIDALCPRRDHRREQDVRIASQ 145 (441)
Q Consensus 82 ----~~v---~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~ 145 (441)
+++ +...-.. ...|..++ .+.++.++...... .....+++|-|+|.| ..+++..
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L----------T~dAQ~a 146 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL----------TRDAQHA 146 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------hHHHHHH
Confidence 111 1100000 01121121 23333333221110 112369999999987 6678889
Q ss_pred HHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHH
Q 013506 146 LFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATS 224 (441)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~ 224 (441)
|.+.++.+.. ++.+|..||....+-+++++ |+. .+.+|.|+.++...++...+++....... .+..+++.
T Consensus 147 LRRTMEkYs~------~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 147 LRRTMEKYSS------NCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred HHHHHHHHhc------CceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 9999988654 57888889999999999998 874 79999999999999999988877665443 36677776
Q ss_pred CCCCCHH
Q 013506 225 CNGYVGA 231 (441)
Q Consensus 225 ~~g~~~~ 231 (441)
+.|--.+
T Consensus 218 S~~nLRr 224 (351)
T KOG2035|consen 218 SNRNLRR 224 (351)
T ss_pred hcccHHH
Confidence 6654333
No 244
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=6e-11 Score=115.04 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=82.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCce-------EEec--
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------FSLS-- 356 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~-------~~i~-- 356 (441)
...++++.|++.+++.|...+.. .+.+..+||+||+|+||||+|+++|+.+.+.- -.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 34788999999999998887763 12234579999999999999999999886531 1110
Q ss_pred ----hh---hhhhh--ccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 357 ----GA---ELYSM--YVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 357 ----~~---~~~~~--~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.. +++.. ......+.++.++..+.. ....|+||||+|.+- ...++.||+.|+.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALLKtLEE 145 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAMLKTLEE 145 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHHHHHHh
Confidence 00 11100 011224567777776532 345799999999873 3568999999997
Q ss_pred CCCCCeEEEEeee
Q 013506 424 LEQAKVIIYPISF 436 (441)
Q Consensus 424 ~~~~~~v~~~~~~ 436 (441)
..+. .++|+++|
T Consensus 146 Pp~~-v~fILaTt 157 (709)
T PRK08691 146 PPEH-VKFILATT 157 (709)
T ss_pred CCCC-cEEEEEeC
Confidence 5554 44555544
No 245
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.9e-11 Score=116.04 Aligned_cols=123 Identities=17% Similarity=0.242 Sum_probs=81.6
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCce-------EEech--
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------FSLSG-- 357 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~-------~~i~~-- 357 (441)
..+.++.|++.+.+.+...+.. ...+..+||+||+|+||||+|+++|+.+.+.. -.+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4688899999999988887653 01122368999999999999999999986631 11100
Q ss_pred -------hhhhhh--ccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 358 -------AELYSM--YVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 358 -------~~~~~~--~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
.+++.. -.......++++...+.. +...|+||||+|++. ....|.||+.|+..
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK~LEep 146 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLKTLEEP 146 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHHHHhCC
Confidence 011100 001234567777777643 345699999999884 35689999999985
Q ss_pred CCCCeEEEEeee
Q 013506 425 EQAKVIIYPISF 436 (441)
Q Consensus 425 ~~~~~v~~~~~~ 436 (441)
+. ..++|++||
T Consensus 147 p~-~~~fIL~t~ 157 (527)
T PRK14969 147 PE-HVKFILATT 157 (527)
T ss_pred CC-CEEEEEEeC
Confidence 54 445555554
No 246
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.24 E-value=8.6e-12 Score=102.13 Aligned_cols=120 Identities=19% Similarity=0.298 Sum_probs=76.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
|..+++|+||+|||||.+++.+++.+.. +++.+++..+.... +....+..............+..|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4568999999999999999999999985 89999998877611 11111112222111111111134999999999
Q ss_pred cccCCCCCch-hhHHHHHHHHHHHhcCCC-----CCCCCCeEEEEEEcCCCC
Q 013506 128 LCPRRDHRRE-QDVRIASQLFTLMDSNKP-----SKTSVPHVVVVASTNRVD 173 (441)
Q Consensus 128 l~~~~~~~~~-~~~~~~~~l~~~~~~~~~-----~~~~~~~~~vi~~~~~~~ 173 (441)
..+....... ....+++.|+..++.... ......++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9875333322 234677888888876322 122345789999988754
No 247
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.24 E-value=2.4e-10 Score=105.58 Aligned_cols=152 Identities=23% Similarity=0.321 Sum_probs=90.1
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEEccC--
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------LTVISPH-- 87 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-------~~~v~~~-- 87 (441)
.++++.+.+...+.+...+. .+.+++|+||||||||++|+.++..+... .+.+...
T Consensus 173 ~l~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 173 ALNDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred HhhcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 36777777777777766553 35789999999999999999999887432 1222211
Q ss_pred --cccccc----ccch--HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----
Q 013506 88 --SVHKAH----VGES--EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK----- 154 (441)
Q Consensus 88 --~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----- 154 (441)
++.... .+.. ...+..+...+... ..++.+|||||+|..-. ..+...++.+++..+
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~~~~vliIDEINRani---------~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PEKKYVFIIDEINRANL---------SKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhc--ccCCcEEEEehhhccCH---------HHhhhhhhhhcccccccccc
Confidence 111111 0000 00112222222211 23578999999986521 123344444444311
Q ss_pred -----------CCCCCCCeEEEEEEcCCCC----ccCHHHhhCCccceEEEecC-CCHH
Q 013506 155 -----------PSKTSVPHVVVVASTNRVD----AIDPALRRSGRFDAEVEVTV-PTAE 197 (441)
Q Consensus 155 -----------~~~~~~~~~~vi~~~~~~~----~l~~~l~~~~r~~~~i~~~~-p~~~ 197 (441)
....-..++.||+|+|..+ .+|.+++| ||. .+.+.+ ++..
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecCCCChH
Confidence 1123457899999999987 78999999 886 455554 4443
No 248
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.23 E-value=2.2e-10 Score=93.35 Aligned_cols=138 Identities=27% Similarity=0.397 Sum_probs=93.8
Q ss_pred chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 013506 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (441)
Q Consensus 23 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------------- 80 (441)
|++++++.|.+.+..- .-++.+||+||+|+||+++|..+++.+...
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 7899999999887541 345779999999999999999999887321
Q ss_pred -EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 013506 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (441)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (441)
+..++...... .-....++.+..........+...|++|||+|.| .....+.|+..++....
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l----------~~~a~NaLLK~LEepp~---- 131 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL----------TEEAQNALLKTLEEPPE---- 131 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-----------HHHHHHHHHHHHSTTT----
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh----------hHHHHHHHHHHhcCCCC----
Confidence 22232221100 1223456666655554444456789999999988 56889999999998543
Q ss_pred CCeEEEEEEcCCCCccCHHHhhCCccceEEEecCC
Q 013506 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVP 194 (441)
Q Consensus 160 ~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p 194 (441)
++.+|.+++.+..+.+.+++ |+. .+.+++.
T Consensus 132 --~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 132 --NTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp --TEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred --CEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 68889999999999999999 885 6777664
No 249
>PLN03025 replication factor C subunit; Provisional
Probab=99.22 E-value=8.8e-11 Score=107.47 Aligned_cols=120 Identities=22% Similarity=0.262 Sum_probs=77.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CceEEechhhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-----ASFFSLSGAEL 360 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~-----~~~~~i~~~~~ 360 (441)
+..++++.|.+++.+.+..++.. ....|++|+|||||||||+|+++|+.+. ..+++++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 34678888988888887776542 1223799999999999999999999873 23667777665
Q ss_pred hhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 361 YSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+ +....+.++. |.... .....|++|||+|.+.. ...+.|+..|+.+....+ +++.+|
T Consensus 76 ~~--~~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~~t~-~il~~n 137 (319)
T PLN03025 76 RG--IDVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSNTTR-FALACN 137 (319)
T ss_pred cc--HHHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccCCce-EEEEeC
Confidence 43 2222222222 11111 13467999999999852 335778888876554444 455554
No 250
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.22 E-value=1e-10 Score=110.79 Aligned_cols=110 Identities=29% Similarity=0.408 Sum_probs=75.9
Q ss_pred ccccccCchhHHHH---HHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 288 TWEDIGGLRDLKKK---LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 288 ~~~~i~g~~~~k~~---l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
.++++.|.+++... +...+.. ....+++|+|||||||||+|+++|...+.+++.++...
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~----- 71 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT----- 71 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-----
Confidence 56677777766433 5555532 12347999999999999999999999999998888743
Q ss_pred cCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 365 VGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
...+.++.+++.+. .+...||||||+|.+.. ...+.|+..|+. +.++++++
T Consensus 72 --~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~a 126 (413)
T PRK13342 72 --SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGA 126 (413)
T ss_pred --ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEe
Confidence 22345556666553 23567999999998742 345778888763 34444444
No 251
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.22 E-value=7.6e-11 Score=114.87 Aligned_cols=117 Identities=24% Similarity=0.361 Sum_probs=83.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---------------- 350 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~---------------- 350 (441)
..++++.|++.+.+.+...+.. + ..+..+||+||+|||||++|+.+|..+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 4688999999999998887763 1 12334789999999999999999998753
Q ss_pred --------ceEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 351 --------SFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 351 --------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++++++++. +.....++.+...+. .....|+||||+|.+. ...++.||
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLL 140 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALL 140 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHH
Confidence 233333321 123456777777764 2345799999999884 35689999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+..+ ...++|++||
T Consensus 141 KtLEepp-~~~ifIlatt 157 (559)
T PRK05563 141 KTLEEPP-AHVIFILATT 157 (559)
T ss_pred HHhcCCC-CCeEEEEEeC
Confidence 9999754 4556666654
No 252
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.21 E-value=1e-10 Score=108.83 Aligned_cols=158 Identities=17% Similarity=0.204 Sum_probs=94.1
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccCc-cccccccc
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHS-VHKAHVGE 96 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~--~~~~v~~~~-~~~~~~~~ 96 (441)
.++|.+++++.+..++. .+.++||.||||||||++|+.++..... ++..+.+.. ......|.
T Consensus 21 ~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 48888888888877652 4689999999999999999999987653 333333221 11111111
Q ss_pred h-HHHH--HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC----CCCCCCCeEEEEEEc
Q 013506 97 S-EKAL--REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK----PSKTSVPHVVVVAST 169 (441)
Q Consensus 97 ~-~~~~--~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~vi~~~ 169 (441)
. .... ...|....... .....+||+||++.+ +...+..|+..++... ......+.-++++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~-L~~A~lLfLDEI~ra----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGY-LPEAEIVFLDEIWKA----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred HHHhhhhhcCchhhhcCCc-cccccEEeecccccC----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 1 0000 01111111000 002349999999866 4477888888885433 222223334555566
Q ss_pred CCCCc---cCHHHhhCCccceEEEecCCC-HHHHHHHHHH
Q 013506 170 NRVDA---IDPALRRSGRFDAEVEVTVPT-AEERFEILKL 205 (441)
Q Consensus 170 ~~~~~---l~~~l~~~~r~~~~i~~~~p~-~~~~~~il~~ 205 (441)
|+..+ ..+++.. ||...+.+++|+ .++-.+++..
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHc
Confidence 75322 2347777 898889999997 4555777764
No 253
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1e-10 Score=112.87 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=80.2
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
...++++.|++.+++.+..++.. + .-...+||+||+|+||||+|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 34688899999999988887753 1 112368999999999999999999999753
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
+++++.... ..-..++.+.+.+ ......|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 333433211 1123344433333 23456799999999984 3557999
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+.... ..++|++||
T Consensus 140 Lk~LEEP~~-~~ifILaTt 157 (624)
T PRK14959 140 LKTLEEPPA-RVTFVLATT 157 (624)
T ss_pred HHHhhccCC-CEEEEEecC
Confidence 999997444 455555554
No 254
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.5e-11 Score=115.65 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=86.7
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------eEEech--
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSLSG-- 357 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------~~~i~~-- 357 (441)
..|.++.|++.+.+.|...+... +-....+|.||-||||||+||.+|+.++|. +-.+..
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 36888999999999999887631 112247999999999999999999999654 111111
Q ss_pred -------hhhhhh--ccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 358 -------AELYSM--YVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 358 -------~~~~~~--~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
.|++.. -.....+++|++.+++. .+++.|.+|||++++- ..++|.||+.|+..
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEEP 146 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEEP 146 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccccC
Confidence 111110 01123467788877774 4567799999999984 47799999999974
Q ss_pred CCCCeEEEEeeee
Q 013506 425 EQAKVIIYPISFI 437 (441)
Q Consensus 425 ~~~~~v~~~~~~~ 437 (441)
...+++|+|||=
T Consensus 147 -P~hV~FIlATTe 158 (515)
T COG2812 147 -PSHVKFILATTE 158 (515)
T ss_pred -ccCeEEEEecCC
Confidence 455666666663
No 255
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.19 E-value=3.4e-10 Score=112.43 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=102.9
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG------------------ 78 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~------------------ 78 (441)
.|.+|+|++.+|..|.-....| ...+|||.|++|||||++++.++..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3679999999999887765442 124799999999999999999998873
Q ss_pred -----------------CcEEEEccCccccccccchHHHHHHHHHHH-----HhhhhcCCCeEEEEccccccccCCCCCc
Q 013506 79 -----------------AHLTVISPHSVHKAHVGESEKALREAFSQA-----SSHALSGKPSVVFIDEIDALCPRRDHRR 136 (441)
Q Consensus 79 -----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~il~iDe~~~l~~~~~~~~ 136 (441)
.+++.+..........|... +...+... ..........+|||||++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLL-------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhC--------
Confidence 23333333222111112110 11111100 00011123469999999988
Q ss_pred hhhHHHHHHHHHHHhcCC-------CCCCCCCeEEEEEEcCCC-CccCHHHhhCCccceEEEecCCC-HHHHHHHHHH
Q 013506 137 EQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRV-DAIDPALRRSGRFDAEVEVTVPT-AEERFEILKL 205 (441)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~vi~~~~~~-~~l~~~l~~~~r~~~~i~~~~p~-~~~~~~il~~ 205 (441)
+...+..|+..++... .......++.+|+++|+. ..+++.+.. ||...+.++.+. .+++.+++..
T Consensus 139 --~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 139 --DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred --CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 4467888888886532 111122468999999875 368889998 998788887774 5666777654
No 256
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.2e-10 Score=111.82 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=79.5
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC----------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA---------------- 350 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~---------------- 350 (441)
..+.++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|..+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4678889999999888876642 1 22345899999999999999999998854
Q ss_pred --------ceEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 351 --------SFFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 351 --------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++++++++.. -....++.+...+.. ....|++|||+|.+. ....+.||
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaLL 140 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNALL 140 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHHH
Confidence 1223322211 123446666665543 334699999999884 24579999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+..+.. .++|++|+
T Consensus 141 KtLEEPp~~-tvfIL~Tt 157 (605)
T PRK05896 141 KTLEEPPKH-VVFIFATT 157 (605)
T ss_pred HHHHhCCCc-EEEEEECC
Confidence 999975554 45555544
No 257
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-09 Score=98.11 Aligned_cols=100 Identities=21% Similarity=0.431 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc-cccccchHH-HHHHHHHHHHhhhhcCCCeEEEEcccccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-KAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~ 130 (441)
+.+|||.||+|+|||.|++.+|+.++.|+...+|..+. ..|+++..+ .+..++..+.......+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 35899999999999999999999999999999998875 446665543 4556666666555556788999999999975
Q ss_pred CCCCCch----hhHHHHHHHHHHHhc
Q 013506 131 RRDHRRE----QDVRIASQLFTLMDS 152 (441)
Q Consensus 131 ~~~~~~~----~~~~~~~~l~~~~~~ 152 (441)
...+.+. ...-+++.|+.+++.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 4432222 244678889999876
No 258
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.3e-10 Score=113.94 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=81.8
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..|+++.|++++++.+...+.. + ..+..+||+||+|+||||+|+++|..+.+.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4688999999999998887753 1 123346999999999999999999998653
Q ss_pred ---------eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 352 ---------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 352 ---------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
++++++.+ ....++++.+...+.. ....|+||||+|.+. ....|.||
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naLL 140 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNALL 140 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHHH
Confidence 22222211 1123457777766642 345699999999884 35689999
Q ss_pred HHhcCCCCCCeEEEEeee
Q 013506 419 TEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~~~ 436 (441)
+.|+...+. .++|++||
T Consensus 141 k~LEepp~~-~~fIl~t~ 157 (576)
T PRK14965 141 KTLEEPPPH-VKFIFATT 157 (576)
T ss_pred HHHHcCCCC-eEEEEEeC
Confidence 999975554 44444444
No 259
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=1.3e-10 Score=111.42 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=79.8
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..|+++.|++.+++.+..++.. + ..+..+||+|||||||||+|+++|..+.+.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~ 78 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA 78 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH
Confidence 4688999999999988887763 1 122235999999999999999999988541
Q ss_pred --------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHH
Q 013506 352 --------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (441)
Q Consensus 352 --------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~ 419 (441)
+++++.++ ......++.+...+. ...+.|+||||+|.+. ...++.||+
T Consensus 79 i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLLk 138 (504)
T PRK14963 79 VRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALLK 138 (504)
T ss_pred HhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHHH
Confidence 34444321 112345566555443 2456799999999762 356899999
Q ss_pred HhcCCCCCCeEEEEeee
Q 013506 420 EMDGLEQAKVIIYPISF 436 (441)
Q Consensus 420 ~l~~~~~~~~v~~~~~~ 436 (441)
.|+.... ..++|+.++
T Consensus 139 ~LEep~~-~t~~Il~t~ 154 (504)
T PRK14963 139 TLEEPPE-HVIFILATT 154 (504)
T ss_pred HHHhCCC-CEEEEEEcC
Confidence 9997544 444554444
No 260
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.18 E-value=4.2e-10 Score=107.48 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=93.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEccC-cc-
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA----HLTVISPH-SV- 89 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~----~~~~v~~~-~~- 89 (441)
.+|+++.|++.+++.+.-.+ ..+++++|+||||||||++++.+...+.. ..+.+... ..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 37899999999988877544 34689999999999999999999876532 11111110 00
Q ss_pred --------------ccccccchHHHHHHHHHHH----HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 90 --------------HKAHVGESEKALREAFSQA----SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 90 --------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
.......... .++... .........++|||||++.+ +...+..|...++
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~---~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKP---ALVGGGPIPLPGEISLAHNGVLFLDELPEF----------KRSVLDALREPIE 320 (499)
T ss_pred hhhccccccccCCccccccccchh---hhhCCccccchhhhhccCCCeEecCChhhC----------CHHHHHHHHHHHH
Confidence 0000000000 000000 00011123579999999876 4466777777776
Q ss_pred cCCC-------CCCCCCeEEEEEEcCCC-----C------------------ccCHHHhhCCccceEEEecCCCHHH
Q 013506 152 SNKP-------SKTSVPHVVVVASTNRV-----D------------------AIDPALRRSGRFDAEVEVTVPTAEE 198 (441)
Q Consensus 152 ~~~~-------~~~~~~~~~vi~~~~~~-----~------------------~l~~~l~~~~r~~~~i~~~~p~~~~ 198 (441)
.... ......++.+|+++|+- . .++..++. ||+..+.++.++.++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEK 395 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHH
Confidence 5321 11223468999999863 1 36777888 999888888887664
No 261
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.6e-10 Score=108.64 Aligned_cols=123 Identities=16% Similarity=0.245 Sum_probs=80.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE-------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF------------- 353 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~------------- 353 (441)
..++++.|++.+++.+...+.. + ..+..+||+||+|+||||+|+++|+.+.+.-.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 4688899999999988877652 1 22334899999999999999999999876310
Q ss_pred --Eec-h--------hhhhhhccC---chHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHH
Q 013506 354 --SLS-G--------AELYSMYVG---ESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (441)
Q Consensus 354 --~i~-~--------~~~~~~~~g---~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~ 415 (441)
.+. + .++. .+.+ ...+.++.+.+.+. .....|+||||+|.+. ....+
T Consensus 81 c~~c~~c~~~~~~~~~n~~-~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------------~~~~~ 145 (397)
T PRK14955 81 CGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------------IAAFN 145 (397)
T ss_pred CCCCHHHHHHhcCCCCCeE-eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------HHHHH
Confidence 000 0 0110 0111 11355666666553 2345699999999884 24578
Q ss_pred HHHHHhcCCCCCCeEEEEeee
Q 013506 416 TLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 416 ~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.||+.|+..++..++|++++.
T Consensus 146 ~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 146 AFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHHHhcCCCCeEEEEEeCC
Confidence 899999976665555555543
No 262
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=9.9e-10 Score=107.16 Aligned_cols=197 Identities=13% Similarity=0.234 Sum_probs=111.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE-EccC---cccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV-ISPH---SVHK 91 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~-v~~~---~~~~ 91 (441)
..+++++|+++.++.|..++... .++..+++.++|+|||||||||+++.+++.++..+.+ ++.. ....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 78899999999999999887542 1223455679999999999999999999988755432 1111 0000
Q ss_pred c------------cccchHHHHHHHHHHHHhh--h----hcCCCeEEEEccccccccCCCCCchhhHHHHHHHHH-HHhc
Q 013506 92 A------------HVGESEKALREAFSQASSH--A----LSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFT-LMDS 152 (441)
Q Consensus 92 ~------------~~~~~~~~~~~~~~~~~~~--~----~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~-~~~~ 152 (441)
. ........+..++..+... . ...+..||||||++.+... ....++.++. .+..
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-------~~~~lq~lLr~~~~e 225 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-------DTRALHEILRWKYVS 225 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-------hHHHHHHHHHHHhhc
Confidence 0 0011223334444433311 0 1235679999999876422 1224444544 2221
Q ss_pred CCCCCCCCCeEEEEEEcCCC------C-------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC------
Q 013506 153 NKPSKTSVPHVVVVASTNRV------D-------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD------ 213 (441)
Q Consensus 153 ~~~~~~~~~~~~vi~~~~~~------~-------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~------ 213 (441)
. ....++++.+-++. . .+.+.+++..|. .+|.|++++..++.+.+...+......
T Consensus 226 ~-----~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~ 299 (637)
T TIGR00602 226 I-----GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIK 299 (637)
T ss_pred C-----CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence 1 11123444432221 0 134677653344 379999999999888777766543211
Q ss_pred --CcccHHHHHHHCCCCCHHHH
Q 013506 214 --ANVDLEAIATSCNGYVGADL 233 (441)
Q Consensus 214 --~~~~~~~l~~~~~g~~~~~i 233 (441)
....+..++....|-....|
T Consensus 300 ~p~~~~l~~I~~~s~GDiRsAI 321 (637)
T TIGR00602 300 VPKKTSVELLCQGCSGDIRSAI 321 (637)
T ss_pred cCCHHHHHHHHHhCCChHHHHH
Confidence 11235566665555433333
No 263
>PRK04132 replication factor C small subunit; Provisional
Probab=99.18 E-value=9.4e-10 Score=110.15 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=114.4
Q ss_pred CCcEEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEccCccccccccchHHHHHHHHHHHHhhh-hc-CCCeEEEE
Q 013506 52 WPRGLLLYG--PPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHA-LS-GKPSVVFI 122 (441)
Q Consensus 52 ~~~~vll~G--p~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~il~i 122 (441)
|+-+-+..| |++.||||+|+++|+++ +.+++++|+++... ...++...+...... .. .+..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 344556779 99999999999999998 45789999876322 123444443332211 11 13479999
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHH
Q 013506 123 DEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEI 202 (441)
Q Consensus 123 De~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~i 202 (441)
||+|.| +...++.|+..++.... ++.+|.+||.+..+.+.+++ |+. .+.|++|+.++....
T Consensus 637 DEaD~L----------t~~AQnALLk~lEep~~------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~ 697 (846)
T PRK04132 637 DEADAL----------TQDAQQALRRTMEMFSS------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKR 697 (846)
T ss_pred ECcccC----------CHHHHHHHHHHhhCCCC------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHH
Confidence 999988 34678889999987432 57899999999999999998 885 899999999999998
Q ss_pred HHHHhccCCCCC-cccHHHHHHHCCCCCHHHH
Q 013506 203 LKLYTKKVPLDA-NVDLEAIATSCNGYVGADL 233 (441)
Q Consensus 203 l~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i 233 (441)
+...+.+..... +..+..++..+.|-....+
T Consensus 698 L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 698 LRYIAENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 888777655432 3347788888877544444
No 264
>PRK04195 replication factor C large subunit; Provisional
Probab=99.16 E-value=3.3e-10 Score=109.45 Aligned_cols=124 Identities=25% Similarity=0.330 Sum_probs=84.1
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...+.++.|.+..++.+..++..... + .++.++||+|||||||||+|+++|+.++.++++++.++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 34678899999999999888753221 1 23568999999999999999999999999999999887543
Q ss_pred CchHHHHHHHHHHHHh------cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARL------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~------~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...++.+...+.. ..+.||+|||+|.+.... . ...++.|+..++. ....+|+++..
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~------d----~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE------D----RGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc------c----hhHHHHHHHHHHc--CCCCEEEeccC
Confidence 1223333333321 256799999999986421 0 1235667777763 33345544433
No 265
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2.3e-10 Score=109.28 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=78.7
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------eEEe----
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSL---- 355 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------~~~i---- 355 (441)
..+.++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|..+.+. +-.+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 4678899999999988887753 1 122236899999999999999999988641 1111
Q ss_pred --ch---hhhhhhc--cCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 356 --SG---AELYSMY--VGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 356 --~~---~~~~~~~--~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
.. .+++... .......++.+.+.+.. +.+.|++|||+|.+. ...++.||+.|+..
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLLk~LEep 146 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALLKTLEEP 146 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHHHHHhcC
Confidence 00 0111000 00123445666655542 345799999999874 35679999999986
Q ss_pred CCCCeEEEEeee
Q 013506 425 EQAKVIIYPISF 436 (441)
Q Consensus 425 ~~~~~v~~~~~~ 436 (441)
+... ++|+++|
T Consensus 147 p~~~-v~Il~tt 157 (486)
T PRK14953 147 PPRT-IFILCTT 157 (486)
T ss_pred CCCe-EEEEEEC
Confidence 5554 4555543
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=1.9e-08 Score=90.31 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=108.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-cEEE---EccCc--------ccc----ccccc-hHHHHHHHHHHHHhhhhcC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGA-HLTV---ISPHS--------VHK----AHVGE-SEKALREAFSQASSHALSG 115 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~-~~~~---v~~~~--------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~ 115 (441)
+..++|+||+|+||||+++.+++.+.. .+.. ++... +.. ...+. .......+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346899999999999999999998763 2221 11100 000 00000 0111122222222222345
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC--Ccc----CHHHhhCCccceEE
Q 013506 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV--DAI----DPALRRSGRFDAEV 189 (441)
Q Consensus 116 ~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~--~~l----~~~l~~~~r~~~~i 189 (441)
++.+++|||++.+.+ .....+..+.+. ... ....+.++.+..+. ..+ ...+.+ |+...+
T Consensus 123 ~~~vliiDe~~~l~~----------~~~~~l~~l~~~-~~~--~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 123 KRALLVVDEAQNLTP----------ELLEELRMLSNF-QTD--NAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred CCeEEEEECcccCCH----------HHHHHHHHHhCc-ccC--CCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeee
Confidence 678999999987621 223333322221 111 11123333333221 111 123555 776788
Q ss_pred EecCCCHHHHHHHHHHHhccCCC-----CCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhh
Q 013506 190 EVTVPTAEERFEILKLYTKKVPL-----DANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMED 264 (441)
Q Consensus 190 ~~~~p~~~~~~~il~~~~~~~~~-----~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~ 264 (441)
.+++++.++..+++...+..... -.+..++.+...+.|.. +.+..++..+...+..... ..++.++
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~--------~~i~~~~ 258 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK--------REIGGEE 258 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC--------CCCCHHH
Confidence 99999999999999887765432 12234777888888875 5588888888777665432 2466666
Q ss_pred HHhhhh
Q 013506 265 WRHARS 270 (441)
Q Consensus 265 ~~~~~~ 270 (441)
+..+..
T Consensus 259 v~~~~~ 264 (269)
T TIGR03015 259 VREVIA 264 (269)
T ss_pred HHHHHH
Confidence 665544
No 267
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.14 E-value=2.8e-10 Score=104.01 Aligned_cols=93 Identities=26% Similarity=0.311 Sum_probs=64.8
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCc
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE 367 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~ 367 (441)
+|.++.|++++++.+..++..... ...++.+++|+||||||||++|+++|..++.++.....+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 467889999999988877642111 1133567999999999999999999999988776655433211
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 368 SEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
...+...+... ..+.++||||++.+.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~ 94 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLS 94 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhC
Confidence 12233333332 345699999999985
No 268
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.8e-10 Score=111.78 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=83.8
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE---------Eec
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF---------SLS 356 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~---------~i~ 356 (441)
...|.++.|++.+...+...+... ....++||+||+|+|||++|+++|+.+.+... .+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 346888999999999888877631 12236899999999999999999999876311 110
Q ss_pred h---------hhhh--hhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHh
Q 013506 357 G---------AELY--SMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEM 421 (441)
Q Consensus 357 ~---------~~~~--~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l 421 (441)
. .+++ ........+.++++...+.. +...|+||||+|.+- ....+.||+.|
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naLLK~L 145 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNALLKTL 145 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHHHHHH
Confidence 0 0111 11112335677888777643 345699999999883 36789999999
Q ss_pred cCCCCCCeEEEEeee
Q 013506 422 DGLEQAKVIIYPISF 436 (441)
Q Consensus 422 ~~~~~~~~v~~~~~~ 436 (441)
+.... ..++|++|+
T Consensus 146 EePp~-~tvfIL~t~ 159 (620)
T PRK14948 146 EEPPP-RVVFVLATT 159 (620)
T ss_pred hcCCc-CeEEEEEeC
Confidence 97444 455555554
No 269
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=2.7e-10 Score=111.68 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=82.2
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE--------Eec-
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF--------SLS- 356 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~--------~i~- 356 (441)
+..|.++.|++.+.+.+...+... ..+..+||+||+|+|||++|+++|..+.+.-. .+.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 346889999999999888877531 12234689999999999999999998865311 000
Q ss_pred ----hhhhhhh--ccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC
Q 013506 357 ----GAELYSM--YVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ 426 (441)
Q Consensus 357 ----~~~~~~~--~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~ 426 (441)
..+++.. -.......++.+.+.+.. +...|++|||+|.+. ....+.||+.|+..+.
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEPP~ 147 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEPPK 147 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcCCC
Confidence 0011100 000124557777777753 445799999999884 2468999999998555
Q ss_pred CCeEEEEeee
Q 013506 427 AKVIIYPISF 436 (441)
Q Consensus 427 ~~~v~~~~~~ 436 (441)
..++|++|+
T Consensus 148 -~tifILaTt 156 (725)
T PRK07133 148 -HVIFILATT 156 (725)
T ss_pred -ceEEEEEcC
Confidence 445555544
No 270
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=4.9e-10 Score=109.43 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=80.5
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE-------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF------------- 353 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~------------- 353 (441)
..++++.|++.+.+.+...+.. + .-+..+||+||+|+||||+|+++|+.+.+...
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 4688899999999988876642 1 22334899999999999999999999977311
Q ss_pred --Eec-------h--hhhhhhccCc---hHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHH
Q 013506 354 --SLS-------G--AELYSMYVGE---SEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLS 415 (441)
Q Consensus 354 --~i~-------~--~~~~~~~~g~---~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~ 415 (441)
.+. + .++. .+.+. ..+.++.+.+.+. .+...|+||||+|.+. ....+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~a~n 145 (620)
T PRK14954 81 CGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TAAFN 145 (620)
T ss_pred CccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HHHHH
Confidence 000 0 0110 01111 1355666665552 3445699999999884 24579
Q ss_pred HHHHHhcCCCCCCeEEEEee
Q 013506 416 TLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 416 ~ll~~l~~~~~~~~v~~~~~ 435 (441)
.||+.|+..+...++|++++
T Consensus 146 aLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 146 AFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred HHHHHHhCCCCCeEEEEEeC
Confidence 99999998666544444443
No 271
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=3.6e-10 Score=110.23 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=83.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEec---------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS--------- 356 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~--------- 356 (441)
...++++.|++.+++.+...+.. + +.+..+||+||+|+||||+|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 34788999999999998887753 1 22346899999999999999999998875421111
Q ss_pred ----h--------hhhhhhc--cCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHH
Q 013506 357 ----G--------AELYSMY--VGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLL 418 (441)
Q Consensus 357 ----~--------~~~~~~~--~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll 418 (441)
+ .|++... ..-....++.+...+.. ....|+||||+|.+. ...++.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 0 0111100 00124567777777643 345799999999884 35689999
Q ss_pred HHhcCCCCCCeEEEEe
Q 013506 419 TEMDGLEQAKVIIYPI 434 (441)
Q Consensus 419 ~~l~~~~~~~~v~~~~ 434 (441)
+.|+.......+|+++
T Consensus 154 KtLEePp~~~~fIl~t 169 (598)
T PRK09111 154 KTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHhCCCCeEEEEEe
Confidence 9999866654444444
No 272
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=3.1e-10 Score=104.38 Aligned_cols=94 Identities=26% Similarity=0.323 Sum_probs=68.7
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccC
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVG 366 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g 366 (441)
..+.++.|.+..++.+...+..... ...+..+++|+||||||||++|+++|+.++..+..++.+.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 4678889999999888877653111 123456899999999999999999999999887766654321
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 367 ESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 367 ~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
....+..++... ..++||||||++.+.
T Consensus 89 -~~~~l~~~l~~l--~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 89 -KPGDLAAILTNL--EEGDVLFIDEIHRLS 115 (328)
T ss_pred -ChHHHHHHHHhc--ccCCEEEEecHhhcc
Confidence 223455555543 346799999999985
No 273
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.12 E-value=3.6e-11 Score=90.55 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc-cc-cccccchHHHHHHHHHHHHhhh--hcC--CCeEEEEcccccc
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS-VH-KAHVGESEKALREAFSQASSHA--LSG--KPSVVFIDEIDAL 128 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~il~iDe~~~l 128 (441)
|+||.|+||+|||++++++|+.++..+..+.+.. +. ++..|.. +++...... ..+ -..|+++||+|..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence 6899999999999999999999999887775431 11 0000000 000000000 000 0259999999976
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEcCCCC-----ccCHHHhhCCccc
Q 013506 129 CPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD-----AIDPALRRSGRFD 186 (441)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~vi~~~~~~~-----~l~~~l~~~~r~~ 186 (441)
+...+..+++.+...... ..-...++||+|.|+.+ .++++... ||.
T Consensus 75 ----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 ----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp -----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred ----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 447788888888754322 11223478999999876 67888887 773
No 274
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.12 E-value=1.1e-08 Score=87.20 Aligned_cols=88 Identities=27% Similarity=0.405 Sum_probs=61.0
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC-------------CCccCHHHhhCC
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR-------------VDAIDPALRRSG 183 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~-------------~~~l~~~l~~~~ 183 (441)
|.+|||||+|.| +.++...|...++.... .++++ ++|+ |..+++.++.
T Consensus 297 PGVLFIDEVhML----------DiEcFTyL~kalES~ia------Pivif-AsNrG~~~irGt~d~~sPhGip~dllD-- 357 (456)
T KOG1942|consen 297 PGVLFIDEVHML----------DIECFTYLHKALESPIA------PIVIF-ASNRGMCTIRGTEDILSPHGIPPDLLD-- 357 (456)
T ss_pred CcceEeeehhhh----------hhHHHHHHHHHhcCCCC------ceEEE-ecCCcceeecCCcCCCCCCCCCHHHhh--
Confidence 779999999987 66777778888776432 24444 4443 3467788887
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH
Q 013506 184 RFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATS 224 (441)
Q Consensus 184 r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~ 224 (441)
|.- ++..-+++.++..+|++.......+..+.+ +..++..
T Consensus 358 Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 358 RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 774 788888999999999998777665554332 3444443
No 275
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=6.6e-10 Score=105.58 Aligned_cols=117 Identities=21% Similarity=0.294 Sum_probs=78.6
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..|+++.|++.+...+...+.. + ..+..+||+||+|+|||++|+++|..+.+.
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 4688999999999888877753 1 223458999999999999999999988542
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
++++++... . .-+.++.+.+.+ ......|+||||+|.+. ....+.|
T Consensus 82 ~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~L 141 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNSL 141 (451)
T ss_pred HHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHHH
Confidence 222222111 1 123444443333 22556799999999884 2457999
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+..++ ..++|+++|
T Consensus 142 Lk~lEep~~-~~~~Il~t~ 159 (451)
T PRK06305 142 LKTLEEPPQ-HVKFFLATT 159 (451)
T ss_pred HHHhhcCCC-CceEEEEeC
Confidence 999998655 455555554
No 276
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.10 E-value=9.4e-09 Score=92.65 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=50.5
Q ss_pred cccccc-cccchHHHHHHHHHHHHhhccCchHHHhcCCC-CCcEEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEE
Q 013506 14 KWKAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLK-WPRGLLLYGPPGTGKTSLVRAVVRECGA-------HLTVI 84 (441)
Q Consensus 14 ~~~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~vll~Gp~GtGKT~l~~~l~~~l~~-------~~~~v 84 (441)
....|+ ++.|++++++++.+++.... .|.. ....++|+|||||||||+++++++.++. +++.+
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~ 116 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTF 116 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEE
Confidence 356677 89999999999998875522 1222 3467899999999999999999999865 66666
Q ss_pred cc
Q 013506 85 SP 86 (441)
Q Consensus 85 ~~ 86 (441)
..
T Consensus 117 ~~ 118 (361)
T smart00763 117 KW 118 (361)
T ss_pred Ee
Confidence 55
No 277
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.10 E-value=1.4e-09 Score=88.05 Aligned_cols=73 Identities=38% Similarity=0.545 Sum_probs=53.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHH---HHHHHHHHHhcCCeEEEEeccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEAL---LRNTFQRARLAAPSIIFFDEADVV 395 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~---~~~~~~~a~~~~~~vl~iDE~d~~ 395 (441)
.+.+++++||||||||++++.++..+ +.+++.++..+....+....... ....+.......+.++++||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 88888888877655332222111 122233344556789999999987
No 278
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=4.3e-10 Score=110.80 Aligned_cols=117 Identities=21% Similarity=0.339 Sum_probs=78.6
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCce--------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------------- 352 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~-------------- 352 (441)
..++++.|++.+++.+...+.. + ..+..+||+||+|+||||+|+++|+.+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 4688999999999988877653 1 1223469999999999999999999886422
Q ss_pred -----------EEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 353 -----------FSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 353 -----------~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
++++.++ ....+.++.+.+.+.. ....|+||||+|.+. ...++.|
T Consensus 81 ~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naL 140 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNAL 140 (585)
T ss_pred HHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHH
Confidence 1111111 1123445665554432 345699999999884 2568999
Q ss_pred HHHhcCCCCCCeEEEEee
Q 013506 418 LTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~ 435 (441)
|+.|+.......+|++++
T Consensus 141 Lk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 141 LKTLEEPPPHAIFILATT 158 (585)
T ss_pred HHHHhcCCCCeEEEEEeC
Confidence 999998665544444443
No 279
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=6.4e-10 Score=108.04 Aligned_cols=123 Identities=15% Similarity=0.206 Sum_probs=80.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------eEEech-
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSLSG- 357 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------~~~i~~- 357 (441)
...|.++.|++.+.+.+...+.. + ..+..+||+||+|+||||+|+++|+.+.+. +-.+..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 34688999999999988887753 1 123348999999999999999999998652 111100
Q ss_pred --------hhhhhhccC---chHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 358 --------AELYSMYVG---ESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 358 --------~~~~~~~~g---~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.+++. +-| ..-+.++.+.+.+. .....|++|||++.+. ....+.||+.|+
T Consensus 80 ~~i~~~~~~dv~~-idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK~LE 144 (563)
T PRK06647 80 KSIDNDNSLDVIE-IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLKTIE 144 (563)
T ss_pred HHHHcCCCCCeEE-ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHHhhc
Confidence 01110 111 12345666654432 3456799999999883 356899999999
Q ss_pred CCCCCCeEEEEeee
Q 013506 423 GLEQAKVIIYPISF 436 (441)
Q Consensus 423 ~~~~~~~v~~~~~~ 436 (441)
..+. ..++|+++|
T Consensus 145 epp~-~~vfI~~tt 157 (563)
T PRK06647 145 EPPP-YIVFIFATT 157 (563)
T ss_pred cCCC-CEEEEEecC
Confidence 7444 455555544
No 280
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.4e-08 Score=90.01 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 013506 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------------- 80 (441)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----------------------- 80 (441)
+....+.|.+.+... .-++.+||+||+|+||+++|+.+|+.+...
T Consensus 7 ~~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP 74 (325)
T PRK06871 7 LQPTYQQITQAFQQG------------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHP 74 (325)
T ss_pred hHHHHHHHHHHHHcC------------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 556666666665431 235789999999999999999999877431
Q ss_pred -EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 013506 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (441)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (441)
+..+...+ .. .-....++.+.+........+...|++||++|.| .....+.|++.++...
T Consensus 75 D~~~i~p~~--~~--~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m----------~~~AaNaLLKtLEEPp----- 135 (325)
T PRK06871 75 DFHILEPID--NK--DIGVDQVREINEKVSQHAQQGGNKVVYIQGAERL----------TEAAANALLKTLEEPR----- 135 (325)
T ss_pred CEEEEcccc--CC--CCCHHHHHHHHHHHhhccccCCceEEEEechhhh----------CHHHHHHHHHHhcCCC-----
Confidence 11221110 00 1223456666665555555566789999999988 5578899999998743
Q ss_pred CCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHH
Q 013506 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 160 ~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~ 206 (441)
+++++|.+++.++.+.|.+++ |+. .+.|++|+.++..+.+...
T Consensus 136 -~~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 -PNTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred -CCeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 367888889999999999999 886 7999999999988877754
No 281
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=9.5e-10 Score=88.49 Aligned_cols=74 Identities=30% Similarity=0.424 Sum_probs=59.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc---eEEechhhhhhh--------------ccCchHHHHHHHHHHHHhcCCeE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS---FFSLSGAELYSM--------------YVGESEALLRNTFQRARLAAPSI 386 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~---~~~i~~~~~~~~--------------~~g~~~~~~~~~~~~a~~~~~~v 386 (441)
+.+++|+||||||||++++.+|..+... ++.++....... .........+.++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4579999999999999999999999775 778777654321 22344667788899998777789
Q ss_pred EEEeccccccc
Q 013506 387 IFFDEADVVGA 397 (441)
Q Consensus 387 l~iDE~d~~~~ 397 (441)
+|+||++.+..
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999999874
No 282
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=2.1e-09 Score=98.15 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=109.9
Q ss_pred ccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccch
Q 013506 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 21 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~ 97 (441)
++|.....+.+.+.+... .....+|+|+|++||||+++|+++-... +.+++.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l--- 66 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLL--- 66 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHH---
Confidence 356555555555554331 1245789999999999999999986544 46899999986542111
Q ss_pred HHHHHHHHHHH-----------HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCCCCC
Q 013506 98 EKALREAFSQA-----------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKTSVP 161 (441)
Q Consensus 98 ~~~~~~~~~~~-----------~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ 161 (441)
. ..+|... ........++.|||||++.| +...+..|+..++.... ......
T Consensus 67 ~---~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 67 D---SELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATA----------SLLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred H---HHHhccccccccCcccccCCchhhCCCCEEEeCChHhC----------CHHHHHHHHHHHHcCcEEecCCCceecc
Confidence 0 1122110 00011224679999999987 44677888888765331 111223
Q ss_pred eEEEEEEcCCC-------CccCHHHhhCCccc-eEEEecCCC--HHHHHHHHHHHhcc----CCCC--Cccc---HHHHH
Q 013506 162 HVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKK----VPLD--ANVD---LEAIA 222 (441)
Q Consensus 162 ~~~vi~~~~~~-------~~l~~~l~~~~r~~-~~i~~~~p~--~~~~~~il~~~~~~----~~~~--~~~~---~~~l~ 222 (441)
++.+|++++.. ..+.+.+.. |+. ..+.+|+.. .++...++..++.. .... ...+ ++.+.
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLL 211 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 57888888753 234456655 663 234455543 23334444443332 1211 1122 44555
Q ss_pred HHCCCCCHHHHHHHHHHHHHH
Q 013506 223 TSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 223 ~~~~g~~~~~i~~l~~~a~~~ 243 (441)
.....-+-++++++++.++..
T Consensus 212 ~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 212 EYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred hCCCCchHHHHHHHHHHHHHh
Confidence 555555777888887776653
No 283
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=2.4e-08 Score=89.85 Aligned_cols=174 Identities=19% Similarity=0.280 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EE
Q 013506 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------LT 82 (441)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------------~~ 82 (441)
++.+.+.+...+... .-++.+||+||+|+||+++|..+++.+... +.
T Consensus 9 ~~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~ 76 (319)
T PRK08769 9 QQRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQ 76 (319)
T ss_pred HHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEE
Confidence 556677777665431 235679999999999999999999876321 11
Q ss_pred EEc--cCccccc-cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 013506 83 VIS--PHSVHKA-HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (441)
Q Consensus 83 ~v~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (441)
.+. ...-... ........++++.+........+...|++||++|.| +....+.|++.++....
T Consensus 77 ~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEEPp~---- 142 (319)
T PRK08769 77 LVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAI----------NRAACNALLKTLEEPSP---- 142 (319)
T ss_pred EEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhh----------CHHHHHHHHHHhhCCCC----
Confidence 121 1000000 001123345555554444444455679999999988 55788999999987433
Q ss_pred CCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHH
Q 013506 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (441)
Q Consensus 160 ~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i 233 (441)
+++||.+++.++.+.|.+++ |+. .+.|++|+.++..+.+... ... ......++..+.|.....+
T Consensus 143 --~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 143 --GRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred --CCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 56788888889999999999 986 7899999999888777642 111 1123345556665544443
No 284
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.07 E-value=3.7e-10 Score=98.95 Aligned_cols=65 Identities=32% Similarity=0.539 Sum_probs=52.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCc---eEEechhhhhhhccCchHHHHHHHHHHHHh-----cCCeEEEEeccccccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEAS---FFSLSGAELYSMYVGESEALLRNTFQRARL-----AAPSIIFFDEADVVGA 397 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~---~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~-----~~~~vl~iDE~d~~~~ 397 (441)
.++|.|||||||||+|++++.-.... |++++... ...++++.+|+.+.. ....|||||||+.+-.
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 68999999999999999999988654 77776633 456678888888853 4567999999999853
No 285
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.06 E-value=2.4e-09 Score=100.95 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=27.4
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.+.++..+-++|++||||||+||+++...
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~ 341 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLL 341 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456778889999999999999999999887
No 286
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=1.1e-09 Score=104.74 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=80.1
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC---------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--------------- 350 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--------------- 350 (441)
...++++.|++.+++.+...+.. + ..+..+||+||+|+|||++|+++|..+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34688999999999988887753 1 12234589999999999999999998743
Q ss_pred ---------ceEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 351 ---------SFFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 351 ---------~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
.++.++.++. ..-+.++.+...+.. +...|++|||+|.+. ..+.+.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1233322111 113556666655421 345699999999884 3678999
Q ss_pred HHHhcCCCCCCeEEEEee
Q 013506 418 LTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~ 435 (441)
|+.|+..+...++|++++
T Consensus 138 LK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 138 LKTLEEPPSYVKFILATT 155 (535)
T ss_pred HHHHhhcCCceEEEEEEC
Confidence 999998755544444443
No 287
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.06 E-value=2.5e-08 Score=85.33 Aligned_cols=126 Identities=23% Similarity=0.305 Sum_probs=83.5
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC------------CCccCHHHhhCCc
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR------------VDAIDPALRRSGR 184 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~------------~~~l~~~l~~~~r 184 (441)
|.||||||+|.| +.++...|.+.++..-. . +++.+||+ |..+|-.++. |
T Consensus 289 pGVLFIDEvHML----------DIEcFsFlNrAlE~d~~------P-iiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML----------DIECFSFLNRALENDMA------P-IIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh----------hhHHHHHHHHHhhhccC------c-EEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 679999999987 66777777777776432 2 44444443 4467778877 7
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHh
Q 013506 185 FDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTME 263 (441)
Q Consensus 185 ~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e 263 (441)
+. ++...+++.++..+|++..+.......+.+ +..+.......+.+..-.++..+...+.++... .+..+
T Consensus 350 ~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~--------~v~~~ 420 (454)
T KOG2680|consen 350 ML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK--------VVEVD 420 (454)
T ss_pred hh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc--------eeehh
Confidence 74 789999999999999999887766655544 344444444445555556666666666665432 35556
Q ss_pred hHHhhhh
Q 013506 264 DWRHARS 270 (441)
Q Consensus 264 ~~~~~~~ 270 (441)
|+..++.
T Consensus 421 di~r~y~ 427 (454)
T KOG2680|consen 421 DIERVYR 427 (454)
T ss_pred HHHHHHH
Confidence 6655544
No 288
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.06 E-value=7.9e-10 Score=103.47 Aligned_cols=119 Identities=20% Similarity=0.349 Sum_probs=80.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------------- 351 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------- 351 (441)
...|+++.|.+.+++.+...+.. + ..+..+||+||||+|||++|+.+|..+.++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 34688899999999888877652 1 223457999999999999999999987543
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
++.+++.+ ......++.+++.+.. ....|++|||+|.+. ....+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~L 137 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNAL 137 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHHH
Confidence 22222211 1233456777777643 234599999999873 2567899
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+..+....+|+.+.+
T Consensus 138 l~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 138 LKTLEEPPEHVVFILATTE 156 (355)
T ss_pred HHHHhCCccceeEEEEeCC
Confidence 9999875554444444433
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.06 E-value=1.6e-09 Score=99.55 Aligned_cols=122 Identities=19% Similarity=0.148 Sum_probs=78.1
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
+..++++.+.+.+++.+...+.. + ..+..++|+||||+|||++|+++++..+.+++.++.++ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 34678889999998888877652 1 12234555899999999999999999998898888876 21 2
Q ss_pred CchHHHHHHHHHHHH-hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~-~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
......+........ ...+.++||||+|.+.. ....+.|.+.|+...... .+|+++|
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~~~~~-~~Ilt~n 139 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAYSKNC-SFIITAN 139 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhcCCCc-eEEEEcC
Confidence 222222332222221 13567999999998731 123345555677655444 4555554
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.06 E-value=2.2e-09 Score=99.77 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC-----CceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE-----ASFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~-----~~~~~i~~~~~~ 361 (441)
..++++.|.+.+.+.+..++.. + ...+++|+||||||||++|+++++.+. .+++.++.+++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 3567788888888888776642 1 123799999999999999999999874 346777877654
Q ss_pred hhc-------------cCc-------hHHHHHHHHHHHHh-----cCCeEEEEecccccccccCCCCCCCcchhhHHHHH
Q 013506 362 SMY-------------VGE-------SEALLRNTFQRARL-----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLST 416 (441)
Q Consensus 362 ~~~-------------~g~-------~~~~~~~~~~~a~~-----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ 416 (441)
... .+. ....++.+.+.... ..+.+|||||++.+.. ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~~ 144 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQA 144 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHHH
Confidence 321 011 12233444333322 2346999999998742 33566
Q ss_pred HHHHhcCCCCCCeEEEEeee
Q 013506 417 LLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 417 ll~~l~~~~~~~~v~~~~~~ 436 (441)
|+..|+......++|+.+++
T Consensus 145 L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 145 LRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred HHHHHHhccCCCeEEEEeCC
Confidence 77777776655555554443
No 291
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.06 E-value=9e-10 Score=106.81 Aligned_cols=173 Identities=20% Similarity=0.243 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----ccCccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI----SPHSVHKAHV 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v----~~~~~~~~~~ 94 (441)
..+.|++.+|..+.-.+..-.. ........+...-|+||+|+||||||++++.++.......+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 3567777776666544422100 0000011122334899999999999999999998876543221 1111111000
Q ss_pred cchHHHHHH-HHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-------CCCCCeEEEE
Q 013506 95 GESEKALRE-AFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------KTSVPHVVVV 166 (441)
Q Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~vi 166 (441)
... .... .++. ........++++|||++.+ +...+..|+..++..... ..-..++.+|
T Consensus 282 ~~~--~~g~~~~~~--G~l~~A~~Gil~iDEi~~l----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 282 RDP--ETREFTLEG--GALVLADNGVCCIDEFDKM----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred Ecc--CcceEEecC--ccEEecCCCEEEEechhhC----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 000 0000 0000 0111224679999999987 335667777777653210 1112367999
Q ss_pred EEcCCCC-------------ccCHHHhhCCccceEE-EecCCCHHHHHHHHHHHhc
Q 013506 167 ASTNRVD-------------AIDPALRRSGRFDAEV-EVTVPTAEERFEILKLYTK 208 (441)
Q Consensus 167 ~~~~~~~-------------~l~~~l~~~~r~~~~i-~~~~p~~~~~~~il~~~~~ 208 (441)
+++|+.+ .+++.+++ ||+..+ ..+.|+.+...+|..+.+.
T Consensus 348 Aa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 348 AAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999863 58899999 997654 4578888888888887654
No 292
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.05 E-value=1.1e-08 Score=98.91 Aligned_cols=78 Identities=19% Similarity=0.090 Sum_probs=54.0
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhc------cC----------------------c
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY------VG----------------------E 367 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~------~g----------------------~ 367 (441)
-|+.++..+|+.||||+|||+++..++... |.+++.+...+-...+ .| .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 378888889999999999999998887644 4455555432211110 00 1
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 368 SEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+..+..+.+.+....+.+++||-+-.+.
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 14566777777777788899999888764
No 293
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.04 E-value=3.3e-09 Score=96.99 Aligned_cols=196 Identities=12% Similarity=0.175 Sum_probs=115.1
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV 94 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~ 94 (441)
+++++|.....+.+.+.+... .....+|+|+|++||||+++|+.+-... +.+++.++|..+.....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 467889888877777766441 1346789999999999999999987554 46899999987532110
Q ss_pred cchHHHHHHHHHHH-----------HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 013506 95 GESEKALREAFSQA-----------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (441)
Q Consensus 95 ~~~~~~~~~~~~~~-----------~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 158 (441)
. ..+|... ........++.|||||++.| +...+..|+..++..... ..
T Consensus 74 ---~---~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 74 ---D---SELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATA----------PMLVQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred ---H---HHHccccccccCCcccccCCchhccCCCeEEeCChhhC----------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 0 1111110 00111223678999999988 446677888877653211 11
Q ss_pred CCCeEEEEEEcCCC-------CccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhc----cCCCC--Cccc---HH
Q 013506 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTK----KVPLD--ANVD---LE 219 (441)
Q Consensus 159 ~~~~~~vi~~~~~~-------~~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~----~~~~~--~~~~---~~ 219 (441)
...++.+|++++.. ..+.+.+.. |+. ..+.+|+... ++...++..++. ..... ...+ +.
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 12257788877653 245566665 663 3455555432 233334444432 22211 1122 45
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q 013506 220 AIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 220 ~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+.......+-++++++++.++.
T Consensus 216 ~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 216 TLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHH
Confidence 55555555677888888887764
No 294
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=1.1e-08 Score=102.25 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=26.8
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++.+++.+
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788999999999999999999999875
No 295
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.2e-08 Score=92.60 Aligned_cols=137 Identities=21% Similarity=0.338 Sum_probs=97.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEEccCcccc--------------
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------------------LTVISPHSVHK-------------- 91 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-------------------------~~~v~~~~~~~-------------- 91 (441)
+-++.+||+||+|+||+++|+.+++.+... +..+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 356789999999999999999999877432 11121110000
Q ss_pred --cc-------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCe
Q 013506 92 --AH-------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPH 162 (441)
Q Consensus 92 --~~-------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 162 (441)
.. -.-....++.+.+........+...|++||++|.| .....+.|++.++.- .++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEEP------p~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL----------NVAAANALLKTLEEP------PPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc----------CHHHHHHHHHHhcCC------CcC
Confidence 00 01122345555555444444455679999999988 557889999999863 336
Q ss_pred EEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~ 206 (441)
+++|.+|+.++.+.|.++| |+. .+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHHc
Confidence 7888899999999999999 885 8999999999998888653
No 296
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.03 E-value=8.5e-09 Score=93.23 Aligned_cols=168 Identities=23% Similarity=0.306 Sum_probs=107.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC--------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-------- 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~-------- 87 (441)
-.|..++|+|..|..|--....| .-.++|+-|+.|+||||++|+++..|+.--....+.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 35688999999999887553332 236899999999999999999999885322221110
Q ss_pred ------------------------ccccccccchHHH------HHHHHHHHHh-----hhhcCCCeEEEEccccccccCC
Q 013506 88 ------------------------SVHKAHVGESEKA------LREAFSQASS-----HALSGKPSVVFIDEIDALCPRR 132 (441)
Q Consensus 88 ------------------------~~~~~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~il~iDe~~~l~~~~ 132 (441)
.+.....+.+..+ +......... ........||++||++.|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 0111111111110 1111111100 011123569999999987
Q ss_pred CCCchhhHHHHHHHHHHHhcCC-------CCCCCCCeEEEEEEcCCCC-ccCHHHhhCCccceEEEecCC-CHHHHHHHH
Q 013506 133 DHRREQDVRIASQLFTLMDSNK-------PSKTSVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVP-TAEERFEIL 203 (441)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~vi~~~~~~~-~l~~~l~~~~r~~~~i~~~~p-~~~~~~~il 203 (441)
+...+..|++.+.... .......++++|+|+|+.+ .|-|.++. ||...+....| +.+++.+|.
T Consensus 157 ------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 157 ------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred ------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHH
Confidence 4467788888776521 1223345799999999965 78899998 99988887666 677888888
Q ss_pred HHHhc
Q 013506 204 KLYTK 208 (441)
Q Consensus 204 ~~~~~ 208 (441)
.....
T Consensus 229 ~r~~~ 233 (423)
T COG1239 229 RRRLA 233 (423)
T ss_pred HHHHH
Confidence 76554
No 297
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=2.3e-09 Score=100.46 Aligned_cols=123 Identities=20% Similarity=0.312 Sum_probs=80.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhh----hh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE----LY 361 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~----~~ 361 (441)
+..++++.|++.+.+.+...+.. + ..+.+++|+||||+|||++|+++|..+.++.......+ .+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 34688899999998888877753 1 23457899999999999999999998865321111000 00
Q ss_pred --hhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 362 --SMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 362 --~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
+.........++.+++.+.. ..+.++|+||+|.+. ...++.|++.|+..+.. .++|+++
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~~~~-~~~Il~~ 145 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEPPAH-AIFILAT 145 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCCCCc-eEEEEEe
Confidence 00011224567777776643 345699999999774 24578999999875444 4444444
No 298
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.02 E-value=3.4e-09 Score=85.22 Aligned_cols=74 Identities=38% Similarity=0.601 Sum_probs=50.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEccCccccccc--------------cchHHHHHHHHHHHHhhhhcC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAH---LTVISPHSVHKAHV--------------GESEKALREAFSQASSHALSG 115 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~---~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 115 (441)
+.+++|+||||||||++++.++..+... ++.+++........ ..........+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL---- 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc----
Confidence 4689999999999999999999998775 77777665432211 12223333444444322
Q ss_pred CCeEEEEcccccccc
Q 013506 116 KPSVVFIDEIDALCP 130 (441)
Q Consensus 116 ~~~il~iDe~~~l~~ 130 (441)
.+.++++||++.+..
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 368999999988753
No 299
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=1.6e-08 Score=99.66 Aligned_cols=30 Identities=17% Similarity=0.260 Sum_probs=26.8
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++.+++.+
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346788999999999999999999999875
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.01 E-value=1.2e-08 Score=100.34 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=43.5
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH 80 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~ 80 (441)
..-+++++|++++++.+...+.. +++++|+||||||||++++.+++.++..
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 34568999999999999987743 3589999999999999999999998654
No 301
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.01 E-value=2.9e-09 Score=106.15 Aligned_cols=111 Identities=29% Similarity=0.351 Sum_probs=71.7
Q ss_pred cccccccCchhHHH---HHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 287 VTWEDIGGLRDLKK---KLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 287 ~~~~~i~g~~~~k~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+++++.|++.+.. .+...+.. ....+++|+|||||||||+|+++|...+..++.++.+..
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 45677778776653 34443321 223479999999999999999999999988888876431
Q ss_pred ccCchHHHHHHHHHHHH-----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 364 YVGESEALLRNTFQRAR-----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~-----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
..+.++.++..+. .....+|||||||.+.. ...+.|+..+++ +.++++++
T Consensus 89 ----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE~----g~IiLI~a 143 (725)
T PRK13341 89 ----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVEN----GTITLIGA 143 (725)
T ss_pred ----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhcC----ceEEEEEe
Confidence 1123333333331 13456999999998742 234667777753 34555544
No 302
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.01 E-value=1.8e-08 Score=101.11 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.8
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++++++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346788999999999999999999999875
No 303
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=4.2e-08 Score=88.21 Aligned_cols=149 Identities=19% Similarity=0.241 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 013506 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (441)
Q Consensus 23 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------------- 80 (441)
.+....+.|.+.+... +-++.+||+||.|+||+++|+.++..+...
T Consensus 7 Wl~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 7 WLVPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred cHHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 3566777777766431 245789999999999999999999876321
Q ss_pred -EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 013506 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (441)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (441)
+..+....- .. .-....++.+.+........+...|++||++|.| .....+.|++.++.-.
T Consensus 75 D~~~i~p~~~-~~--~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m----------~~~AaNaLLKtLEEPp----- 136 (319)
T PRK06090 75 DLHVIKPEKE-GK--SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAM----------NESASNALLKTLEEPA----- 136 (319)
T ss_pred CEEEEecCcC-CC--cCCHHHHHHHHHHHhhCcccCCceEEEecchhhh----------CHHHHHHHHHHhcCCC-----
Confidence 222222110 00 1122345554444433333445679999999988 4578899999998743
Q ss_pred CCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHH
Q 013506 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 160 ~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~ 205 (441)
+++++|..++.++.+.|-++| |+. .+.|++|+.++..+.+..
T Consensus 137 -~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 -PNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -CCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 367888889999999999999 986 899999999998887764
No 304
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-09 Score=97.54 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=119.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHH---H-hCCcEEEEccCcccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR---E-CGAHLTVISPHSVHK 91 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~---~-l~~~~~~v~~~~~~~ 91 (441)
..+.+++|.....+++.+-+.. + -+.+.+||+.|++||||+.+|+.+.. . ...|++.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~-~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA-Y----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh-h----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 5668899987777666665543 1 14568999999999999999998753 3 367899999988765
Q ss_pred ccccchHHHHHHHHHHHHh-----------hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----C
Q 013506 92 AHVGESEKALREAFSQASS-----------HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----P 155 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~ 155 (441)
..... ++|..... ......++.||+||++.|. ...+..++..++... .
T Consensus 144 n~~~~------eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP----------~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 144 NLQEA------ELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLP----------PEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CHHHH------HHhccccceeecccCCcCchheecCCCEEehhhhhhCC----------HhHHHHHHHHHHcCceEecCC
Confidence 43221 12221110 0111235799999999884 366788888887632 2
Q ss_pred CCCCCCeEEEEEEcCCC--CccCH--HHhhCCccceEEEecCCCHH--HHHHHHH----HHhccCCCCCccc----HHHH
Q 013506 156 SKTSVPHVVVVASTNRV--DAIDP--ALRRSGRFDAEVEVTVPTAE--ERFEILK----LYTKKVPLDANVD----LEAI 221 (441)
Q Consensus 156 ~~~~~~~~~vi~~~~~~--~~l~~--~l~~~~r~~~~i~~~~p~~~--~~~~il~----~~~~~~~~~~~~~----~~~l 221 (441)
......++.+|++|+.. ..+-. .+.++ +....|.+|+..+. ++..+++ .++.+........ ...+
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 22334567888887652 22222 33331 34344555544332 2222223 3333444332222 3333
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH
Q 013506 222 ATSCNGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 222 ~~~~~g~~~~~i~~l~~~a~~~~~~ 246 (441)
......-+-++++++++.++..+..
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 3333445788899999988876543
No 305
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.00 E-value=3.5e-09 Score=93.85 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=56.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechh------hhhhhccCchHHHH---------------------HHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA------ELYSMYVGESEALL---------------------RNTF 376 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~------~~~~~~~g~~~~~~---------------------~~~~ 376 (441)
+.+++|.||||||||++|+.+|..++.+++.+++. ++++.|.+.....+ ..++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 45799999999999999999999999999988653 44444432221110 1122
Q ss_pred HHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 377 QRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 377 ~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
. |.. .+.+|+|||++++-+ .+.+.|+..|+.
T Consensus 101 ~-A~~-~g~~lllDEi~r~~~--------------~~q~~Ll~~Le~ 131 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSKP--------------ETNNVLLSVFEE 131 (262)
T ss_pred H-HHH-cCCEEEEcchhhCCH--------------HHHHHHHHHhcC
Confidence 2 222 335999999999743 455666666653
No 306
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=2.2e-09 Score=87.68 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=75.5
Q ss_pred ccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccch
Q 013506 21 IGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 21 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~ 97 (441)
|+|.....+.+.+.+... ...+.+|+|+|++||||+.+|+++-+.. +.+|+.++|..+....
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~---- 65 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEEL---- 65 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHH----
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcch----
Confidence 466666666666655431 1245899999999999999999998754 4689999998763221
Q ss_pred HHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCCCCC
Q 013506 98 EKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKTSVP 161 (441)
Q Consensus 98 ~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ 161 (441)
.-..+|.... ........+.|||||++.| +...+..|+..++.... ......
T Consensus 66 --~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 66 --LESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDL----------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp --HHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-----------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred --hhhhhhccccccccccccccCCceeeccceEEeecchhhh----------HHHHHHHHHHHHhhchhccccccccccc
Confidence 1112222110 0111123679999999988 55788888888875321 111224
Q ss_pred eEEEEEEcCC
Q 013506 162 HVVVVASTNR 171 (441)
Q Consensus 162 ~~~vi~~~~~ 171 (441)
++.+|++|+.
T Consensus 134 ~~RiI~st~~ 143 (168)
T PF00158_consen 134 DVRIIASTSK 143 (168)
T ss_dssp -EEEEEEESS
T ss_pred cceEEeecCc
Confidence 6888888886
No 307
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.99 E-value=5e-08 Score=93.09 Aligned_cols=206 Identities=21% Similarity=0.241 Sum_probs=117.9
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEccCcc
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVISPHSV 89 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----------~~~~~v~~~~~ 89 (441)
.+.+.|..++.|..++...+.- -..+..+++.|-||||||..++.+.+.|. ..++++|+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~--------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD--------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC--------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 4566666677777666542221 01245899999999999999999988663 35677887665
Q ss_pred ccccc----------cch---HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC
Q 013506 90 HKAHV----------GES---EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (441)
Q Consensus 90 ~~~~~----------~~~---~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (441)
.+... ++. ...+..+-...........++|++|||+|.|+... ++++..++.+-..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------QdVlYn~fdWpt~---- 537 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------QDVLYNIFDWPTL---- 537 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------HHHHHHHhcCCcC----
Confidence 44210 000 01111111111111223457899999999986422 2344444443222
Q ss_pred CCCCCeEEEEEEcCCCCc----cCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCC--C
Q 013506 157 KTSVPHVVVVASTNRVDA----IDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGY--V 229 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~~~----l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~--~ 229 (441)
...+++||+.+|..+. +..+..+ |.. ..+.|.+++..++++|+...+.....-.+.-.+.+++..... .
T Consensus 538 --~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 538 --KNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred --CCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 2236888888887652 3334444 443 468999999999999999988876333222234444433222 2
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 013506 230 GADLEALCREATMSAVKRS 248 (441)
Q Consensus 230 ~~~i~~l~~~a~~~~~~~~ 248 (441)
.+....+|++|...+..+.
T Consensus 614 aRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHHHHHHHHHHHhhhhc
Confidence 2333455666655554443
No 308
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=5e-08 Score=88.93 Aligned_cols=156 Identities=20% Similarity=0.214 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEccCccccccccchHHHHHHHHHH
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH------------------------LTVISPHSVHKAHVGESEKALREAFSQ 107 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~------------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 107 (441)
-++.+||+||+|+||+++|..+|..+... +..+....- ...-....++.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~---~~~I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG---KSSLGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc---cccCCHHHHHHHHHH
Confidence 45789999999999999999999887321 122211100 011234456666666
Q ss_pred HHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccce
Q 013506 108 ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA 187 (441)
Q Consensus 108 ~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~ 187 (441)
.......+...|++||++|.| .....+.|++.++.-. +++++|.+++.++.+.|-++| |+.
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m----------~~~AaNaLLKtLEEPp------~~t~fiL~t~~~~~lLpTIrS--RCq- 160 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALL----------TDAAANALLKTLEEPP------ENTWFFLACREPARLLATLRS--RCR- 160 (334)
T ss_pred HhhccccCCceEEEEcchHhh----------CHHHHHHHHHHhcCCC------CCeEEEEEECChhhChHHHHh--ccc-
Confidence 555555566789999999988 5578899999998743 368888889999999999999 887
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHH
Q 013506 188 EVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADL 233 (441)
Q Consensus 188 ~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i 233 (441)
.+.|++|+.++..+.+.... ... ......++..+.|-..+.+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 68999999998887775421 111 1123445555565444433
No 309
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.7e-10 Score=102.14 Aligned_cols=49 Identities=33% Similarity=0.344 Sum_probs=42.6
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
..+|.||.|++.+|+.+.-+.. .++++|++||||||||++++.+...+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 3588999999999999997653 478999999999999999999877663
No 310
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.98 E-value=1e-08 Score=100.82 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=119.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~ 92 (441)
..++.++|.....+.+.+.+... .....+|+|+|++||||+++|+++.... +.+++.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 46689999999888888776542 1345789999999999999999998764 468999999876321
Q ss_pred cccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----
Q 013506 93 HVGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS----- 156 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 156 (441)
.. -..+|.... .......++.|||||++.| +...+..|+..++.....
T Consensus 262 ~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L----------~~~~Q~~Ll~~l~~~~~~~~~~~ 325 (534)
T TIGR01817 262 LL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI----------SPAFQAKLLRVLQEGEFERVGGN 325 (534)
T ss_pred HH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC----------CHHHHHHHHHHHhcCcEEECCCC
Confidence 10 111221110 0011234679999999988 446778888887653211
Q ss_pred CCCCCeEEEEEEcCCCC-------ccCHHHhhCCccc-eEEEecCCC--HHHHHHHHHHHhccC----CCCCccc---HH
Q 013506 157 KTSVPHVVVVASTNRVD-------AIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKKV----PLDANVD---LE 219 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~-~~i~~~~p~--~~~~~~il~~~~~~~----~~~~~~~---~~ 219 (441)
.....++.+|++++..- .+.+.+.. |+. ..+.+|+.. .++...++..++... ......+ +.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 11112467888776531 33444444 443 346666654 344445555444322 1111122 45
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q 013506 220 AIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 220 ~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+......-+-++++++++.+..
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHH
Confidence 55555555677888888887764
No 311
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.4e-08 Score=92.22 Aligned_cols=136 Identities=21% Similarity=0.383 Sum_probs=94.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEccCcc---ccc-cccchHHHH
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGA-------------------------HLTVISPHSV---HKA-HVGESEKAL 101 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-------------------------~~~~v~~~~~---~~~-~~~~~~~~~ 101 (441)
+-++.+||+||+|+|||++|+.+++.+.. .+++++...- ... ...-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34678999999999999999999988742 1233332110 000 001124456
Q ss_pred HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhh
Q 013506 102 REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRR 181 (441)
Q Consensus 102 ~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~ 181 (441)
+.+.+........+...|++||+++.| +....+.+++.++.... ++.+|.+++.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L----------d~~a~naLLk~LEep~~------~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM----------NLQAANSLLKVLEEPPP------QVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC----------CHHHHHHHHHHHHhCcC------CCEEEEEeCChHhChHHHHH
Confidence 666666555444455679999999987 55778888888887531 35566678888889899988
Q ss_pred CCccceEEEecCCCHHHHHHHHHH
Q 013506 182 SGRFDAEVEVTVPTAEERFEILKL 205 (441)
Q Consensus 182 ~~r~~~~i~~~~p~~~~~~~il~~ 205 (441)
|+. .+.|++|+.++..+.+..
T Consensus 163 --Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hhh-hhcCCCCCHHHHHHHHHh
Confidence 885 789999999998887754
No 312
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.96 E-value=1.6e-08 Score=97.43 Aligned_cols=197 Identities=17% Similarity=0.234 Sum_probs=115.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEE
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE-----------CGAHLTVI 84 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~-----------l~~~~~~v 84 (441)
..|++++|.....+.+.+.+... -....+|||+|++||||+++|+.+-.. -+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999999888888776431 124578999999999999999999765 35689999
Q ss_pred ccCccccccccchHHHHHHHHHH-------HH-----hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 85 SPHSVHKAHVGESEKALREAFSQ-------AS-----SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
+|..+..... + ..+|.. +. ........+.|||||++.| +...+..|+..++.
T Consensus 285 nCaal~e~ll---e---seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L----------p~~~Q~kLl~~L~e 348 (538)
T PRK15424 285 NCGAIAESLL---E---AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM----------PLPLQTRLLRVLEE 348 (538)
T ss_pred ecccCChhhH---H---HHhcCCccccccCccccccCCchhccCCCEEEEcChHhC----------CHHHHHHHHhhhhc
Confidence 9987643211 0 111211 00 0011123578999999987 44677888888865
Q ss_pred CCC-----CCCCCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHH----HHHHHHHhcc----CCC
Q 013506 153 NKP-----SKTSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKK----VPL 212 (441)
Q Consensus 153 ~~~-----~~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~----~~il~~~~~~----~~~ 212 (441)
... ......++.+|++++..- .+.+.+.. |+. .+.+..|...+| ..++..++.+ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 321 111123567888887642 12233333 443 344455544444 3344454443 222
Q ss_pred CCcccH--------HHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 213 DANVDL--------EAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 213 ~~~~~~--------~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
...... ..+.......+-++++++++.++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 211111 233333344577888888887765
No 313
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=4.7e-09 Score=95.91 Aligned_cols=120 Identities=14% Similarity=0.205 Sum_probs=79.4
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--------eEEechhh
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------FFSLSGAE 359 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------~~~i~~~~ 359 (441)
.++++.|++.+++.+...+.. + ..+..+||+||+|+|||++|+.+|..+-+. +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 367788999988888877642 1 122346899999999999999999987442 22222211
Q ss_pred hhhhccCchHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 360 LYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
+. .-..+.++.+.+.+ ..+...|++||++|++. ....|.||+.|+..++...+|++++
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 10 01234466666544 33456799999999873 3568999999998665555555554
Q ss_pred ee
Q 013506 436 FI 437 (441)
Q Consensus 436 ~~ 437 (441)
+.
T Consensus 132 ~~ 133 (313)
T PRK05564 132 NL 133 (313)
T ss_pred Ch
Confidence 43
No 314
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.96 E-value=5.3e-09 Score=85.26 Aligned_cols=118 Identities=23% Similarity=0.258 Sum_probs=75.6
Q ss_pred CchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------------------
Q 013506 294 GLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS---------------------- 351 (441)
Q Consensus 294 g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~---------------------- 351 (441)
|++.+.+.+...+.. -..+..+||+||+|+||+++|+.+|+.+-+.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 345556666655542 1223357999999999999999999987432
Q ss_pred -eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC
Q 013506 352 -FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ 426 (441)
Q Consensus 352 -~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~ 426 (441)
++.++..+.. -.-..+.++.+...+.. ....|++|||+|++. ..+.|.||+.|+..+.
T Consensus 69 d~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 69 DFIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEEPPE 131 (162)
T ss_dssp TEEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHSTTT
T ss_pred ceEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcCCCC
Confidence 2222211100 01134667777766633 456799999999984 4789999999999777
Q ss_pred CCeEEEEeeeeeec
Q 013506 427 AKVIIYPISFIFQL 440 (441)
Q Consensus 427 ~~~v~~~~~~~~~~ 440 (441)
....|+++++..++
T Consensus 132 ~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 132 NTYFILITNNPSKI 145 (162)
T ss_dssp TEEEEEEES-GGGS
T ss_pred CEEEEEEECChHHC
Confidence 77777777766543
No 315
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.95 E-value=4.5e-09 Score=90.91 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=109.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE------EEEccCcc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL------TVISPHSV 89 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~------~~v~~~~~ 89 (441)
..+.+++++++....++++...+ .-.|.|+|||||+|||+.+...++.+..+. .+.++++-
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~~-------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGMP-------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred chhhhHhcCCchhhHHHHhccCC-------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 67899999999999999875442 223899999999999999999999886531 11222221
Q ss_pred ccccccchHHHHHHHHHHHHh-hhh--cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 90 HKAHVGESEKALREAFSQASS-HAL--SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
... + ..+.-...|..... ... ...+.++++||+|.+ ...++.+|.+..+.+.. ++.|.
T Consensus 105 rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM----------T~~AQnALRRviek~t~------n~rF~ 165 (360)
T KOG0990|consen 105 RGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM----------TRDAQNALRRVIEKYTA------NTRFA 165 (360)
T ss_pred cCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHh----------hHHHHHHHHHHHHHhcc------ceEEE
Confidence 111 1 11111122222221 001 124679999999987 55677777776555432 45666
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA 214 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~ 214 (441)
..+|.+..+.|++++ ||. .+.|.+.+..+....+.++++......
T Consensus 166 ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~ 210 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKET 210 (360)
T ss_pred EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhc
Confidence 779999999999998 886 678888888887777777776555443
No 316
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.95 E-value=1.1e-08 Score=86.48 Aligned_cols=124 Identities=24% Similarity=0.341 Sum_probs=88.8
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS 362 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~ 362 (441)
...++++.|.+..++.+.+....-+. + .|..|+||+|+.|||||+++|++...+ |+.++++...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 45688899999999888776643222 2 366789999999999999999999877 67788888877654
Q ss_pred hccCchHHHHHHHHHHHHh-cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC---CCCCCeEEEEeeeee
Q 013506 363 MYVGESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG---LEQAKVIIYPISFIF 438 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~-~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~---~~~~~~v~~~~~~~~ 438 (441)
+..+++..+. ..+-|||+|+.. |.. .+.-...|-..||| -.+++++|.++||-.
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~-----------~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS--FEE-----------GDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC--CCC-----------CcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 4556666543 334599999754 311 12335777777777 455788999999875
Q ss_pred ec
Q 013506 439 QL 440 (441)
Q Consensus 439 ~~ 440 (441)
.|
T Consensus 152 HL 153 (249)
T PF05673_consen 152 HL 153 (249)
T ss_pred hc
Confidence 54
No 317
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.2e-09 Score=92.26 Aligned_cols=69 Identities=25% Similarity=0.299 Sum_probs=47.0
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~ 359 (441)
.+.|+.+.|+.+.-.+.....+.+.-..+ .--.|.++|.+||+|+|||.+||-+|...+.||+.+..+.
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 46788888888876654311111110000 0113679999999999999999999999998877666544
No 318
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.93 E-value=3.8e-09 Score=100.50 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=94.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----EEEEccC----
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----LTVISPH---- 87 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----~~~v~~~---- 87 (441)
.++.++.|++.+++.+.-. ...+++++|+||||||||++++.++..+... .+.+..-
T Consensus 188 ~d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~ 252 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLV 252 (506)
T ss_pred cCeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhh
Confidence 4778888988877765422 2467899999999999999999999876421 1221110
Q ss_pred ------------ccccccccchHHHHHHHHHH----HHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 88 ------------SVHKAHVGESEKALREAFSQ----ASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 88 ------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
-+...+...+ ...++.. ...........+||+||++.+ +...+..|.+.++
T Consensus 253 g~~~~~~~~~~rPfr~ph~~~s---~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~----------~~~~~~~L~~~LE 319 (506)
T PRK09862 253 NAESVQKQWRQRPFRSPHHSAS---LTAMVGGGAIPGPGEISLAHNGVLFLDELPEF----------ERRTLDALREPIE 319 (506)
T ss_pred ccccccCCcCCCCccCCCccch---HHHHhCCCceehhhHhhhccCCEEecCCchhC----------CHHHHHHHHHHHH
Confidence 0111111111 1111110 000111223579999999865 4467777887775
Q ss_pred cCCC-------CCCCCCeEEEEEEcCCCC---------------------ccCHHHhhCCccceEEEecCCCHHH
Q 013506 152 SNKP-------SKTSVPHVVVVASTNRVD---------------------AIDPALRRSGRFDAEVEVTVPTAEE 198 (441)
Q Consensus 152 ~~~~-------~~~~~~~~~vi~~~~~~~---------------------~l~~~l~~~~r~~~~i~~~~p~~~~ 198 (441)
.... ......++.+|+++|+.. .++..++. ||+..+.++.++.++
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~ 392 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGI 392 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHH
Confidence 5332 112245689999999852 36678888 999999999998773
No 319
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.93 E-value=9.3e-10 Score=96.55 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=72.7
Q ss_pred cccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhc-CCeE
Q 013506 308 WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLA-APSI 386 (441)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~-~~~v 386 (441)
.++.|..++.|+..+|++|+||+|.+||||+|++|+.|.+.++.++++..+..++ ..++.++++.++.+|+.. .+.|
T Consensus 15 ~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~v 92 (268)
T PF12780_consen 15 EAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKEDLKKALQKAGIKGKPTV 92 (268)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHHHHHHHHHHHCS-S-EE
T ss_pred HHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHHHHHHHHHHhccCCCeE
Confidence 4567778888888899999999999999999999999999999999999988777 778899999999999755 4778
Q ss_pred EEEecccc
Q 013506 387 IFFDEADV 394 (441)
Q Consensus 387 l~iDE~d~ 394 (441)
++++|..-
T Consensus 93 fll~d~qi 100 (268)
T PF12780_consen 93 FLLTDSQI 100 (268)
T ss_dssp EEEECCCS
T ss_pred EEecCccc
Confidence 88887653
No 320
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.93 E-value=2.4e-08 Score=101.13 Aligned_cols=196 Identities=19% Similarity=0.274 Sum_probs=117.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~ 92 (441)
..+++++|.....+.+.+.+... .....+|+|+|++|||||++|+.+.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35678999988888887766431 1245689999999999999999997654 468999998765321
Q ss_pred c-----ccc--------hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC----
Q 013506 93 H-----VGE--------SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP---- 155 (441)
Q Consensus 93 ~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 155 (441)
. .+. ..... ..+. ...++.|||||++.+ +...+..|+..++....
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le-------~a~~GtL~Ldei~~L----------~~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFE-------LADKSSLFLDEVGDM----------PLELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHH-------hcCCCeEEEechhhC----------CHHHHHHHHHHHHhCCEEeCC
Confidence 1 010 00000 1111 123679999999987 44677888888765321
Q ss_pred -CCCCCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHHHH----HHHHHhcc----CCCC----Cc
Q 013506 156 -SKTSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKK----VPLD----AN 215 (441)
Q Consensus 156 -~~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~~~----il~~~~~~----~~~~----~~ 215 (441)
......++.+|++++..- .+.+.+.. |+. .+.+..|...+|.+ ++..++.+ .... ..
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~ 580 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPA 580 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 111123678888887642 23333433 443 34455555554433 34433322 2211 11
Q ss_pred ccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 216 VDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 216 ~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
..++.+.......+-++++++++.+...
T Consensus 581 ~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 581 ETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 2255555555666788888888887753
No 321
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.92 E-value=1.3e-08 Score=99.10 Aligned_cols=198 Identities=20% Similarity=0.270 Sum_probs=119.2
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~ 93 (441)
...+++|.....+.+.+.+... .....+|+|+|++||||+++|+.+.... +.+++.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4578999998888888877541 1346789999999999999999998764 4689999998764321
Q ss_pred ccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CC
Q 013506 94 VGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SK 157 (441)
Q Consensus 94 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~ 157 (441)
. . ..+|.... .......++.|||||++.| +...+..|+..++.... ..
T Consensus 254 ~---e---~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 254 A---E---SELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGEL----------PLALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred H---H---HHhcCccccccCCCcccCCcchhhcCCCEEEecChhhC----------CHHHHHHHHHHHhcCCEeeCCCCc
Confidence 1 0 11121100 0011223678999999988 44677888888765331 11
Q ss_pred CCCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHH----HHHHHHHhcc----CC---CC-CcccH
Q 013506 158 TSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKK----VP---LD-ANVDL 218 (441)
Q Consensus 158 ~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~----~~il~~~~~~----~~---~~-~~~~~ 218 (441)
....++.+|++++..- .+.+.+.. |+. .+.+..|...+| ..++.+++.+ .. .. ...-+
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1223578888887642 34455544 443 334444444433 3333333322 21 11 11125
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 219 EAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 219 ~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
..+.......+-++++++++.++..+
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 55555556668889999888887654
No 322
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.92 E-value=6e-09 Score=96.96 Aligned_cols=197 Identities=20% Similarity=0.280 Sum_probs=119.8
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~ 93 (441)
....++|.....+++.+.+... -+...+||++|++||||-.+|++|-..- +.||+.+||..+....
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3468999999988888877441 1245789999999999999999997654 5699999998764332
Q ss_pred ccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----CCC
Q 013506 94 VGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PSK 157 (441)
Q Consensus 94 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~ 157 (441)
.. .++|.... .......++.||+|||..| +...+..|+..+.... +..
T Consensus 208 ~E------SELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m----------pl~~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LE------SELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM----------PLELQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HH------HHhhcccccCcCCcccccCcceeEcCCceEEeeccccC----------CHHHHHHHHHHHHcCeeEecCCCc
Confidence 11 01222111 1111234679999999877 5578888888886532 222
Q ss_pred CCCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHHHH----HHHHHhc----cCCC-CCccc---H
Q 013506 158 TSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTK----KVPL-DANVD---L 218 (441)
Q Consensus 158 ~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~~~----il~~~~~----~~~~-~~~~~---~ 218 (441)
.-..++.||++||..- .+-+.+-- |+. ++.+..|...+|.+ ++.+++. .... ....+ +
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 2334689999998742 23334433 443 56666666655543 3333333 2322 12223 3
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 219 EAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 219 ~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
..+......-+-++++++++.++..
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhc
Confidence 3333333444667777777776644
No 323
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.92 E-value=2.5e-09 Score=88.03 Aligned_cols=93 Identities=25% Similarity=0.391 Sum_probs=65.0
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----ceEEechhhhhh
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSGAELYS 362 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-----~~~~i~~~~~~~ 362 (441)
.+.+++|.++..+.+.-.... +..| |+++.||||+||||.+..+|+.+-. .+++++.|+-.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~-----------gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE-----------GNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc-----------CCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccc
Confidence 466788887776665554432 3333 7999999999999999999998732 478889888766
Q ss_pred hccCchHHHHHHHHHHHHh----cCCeEEEEecccccc
Q 013506 363 MYVGESEALLRNTFQRARL----AAPSIIFFDEADVVG 396 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~ 396 (441)
+.--...++ .|.+-+. +...++++||+|++.
T Consensus 92 --IDvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 92 --IDVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred --cHHHHHHHH-HHHHhhccCCCCceeEEEeeccchhh
Confidence 544444454 4444332 233599999999985
No 324
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=8.5e-09 Score=101.47 Aligned_cols=117 Identities=22% Similarity=0.328 Sum_probs=80.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc---------------
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--------------- 351 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--------------- 351 (441)
..++++.|++.+.+.+...+.. + ..+..+||+||+|+|||++|+++|..+.+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4688899999999988887753 1 122347999999999999999999988642
Q ss_pred ----------eEEechhhhhhhccCchHHHHHHHHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHH
Q 013506 352 ----------FFSLSGAELYSMYVGESEALLRNTFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTL 417 (441)
Q Consensus 352 ----------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~l 417 (441)
++.+++.+ ......++.+...+.. +...|++|||+|.+. ....+.|
T Consensus 82 ~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naL 141 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAF 141 (614)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHH
Confidence 22222211 1124567777766643 335699999999883 2568999
Q ss_pred HHHhcCCCCCCeEEEEeee
Q 013506 418 LTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 418 l~~l~~~~~~~~v~~~~~~ 436 (441)
|+.|+..+.. .++|++|+
T Consensus 142 LK~LEepp~~-tifIL~tt 159 (614)
T PRK14971 142 LKTLEEPPSY-AIFILATT 159 (614)
T ss_pred HHHHhCCCCC-eEEEEEeC
Confidence 9999986554 44555443
No 325
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.8e-08 Score=88.71 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=25.3
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+|+..-..+.++||+|+||+|+.+++...+
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 455566779999999999999999997766
No 326
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.91 E-value=1.8e-09 Score=96.18 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh--ccCchHHH----------HHHHHHHHHhcCCeEEE
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM--YVGESEAL----------LRNTFQRARLAAPSIIF 388 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~--~~g~~~~~----------~~~~~~~a~~~~~~vl~ 388 (441)
+..+++++|.||||||||++++.+|..++.+++.++....... ++|...-. ....+-.|. ..+.+++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ill 139 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALC 139 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEE
Confidence 3446789999999999999999999999999999987665554 34442111 112333343 3456899
Q ss_pred Eeccccccc
Q 013506 389 FDEADVVGA 397 (441)
Q Consensus 389 iDE~d~~~~ 397 (441)
+||++.+-|
T Consensus 140 lDEin~a~p 148 (327)
T TIGR01650 140 FDEYDAGRP 148 (327)
T ss_pred echhhccCH
Confidence 999998854
No 327
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=4.3e-09 Score=100.45 Aligned_cols=85 Identities=26% Similarity=0.345 Sum_probs=62.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEeccccccc
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGA 397 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~ 397 (441)
++..-+||+||||-||||||+.+|+.+|+.+++++.||-.+ .....+.+..+.+.-. .++|.+|++||||-..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 33456789999999999999999999999999999999765 3333444444433321 2678899999999543
Q ss_pred ccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 398 KRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
..+++.+|..+.
T Consensus 401 -------------~~~Vdvilslv~ 412 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVK 412 (877)
T ss_pred -------------HHHHHHHHHHHH
Confidence 355777776665
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.89 E-value=1.7e-07 Score=90.09 Aligned_cols=175 Identities=20% Similarity=0.277 Sum_probs=99.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc-cCccc----
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS-PHSVH---- 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~-~~~~~---- 90 (441)
..+++++-..+.+++|+.|+...+. +..+.+-+||+||+||||||+++.+|++++..+.+-. ...+.
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~ 87 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDN 87 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccc
Confidence 6778999999999999999864221 2234567899999999999999999999988776542 22210
Q ss_pred --cccccc---------hHHHHHHH-HHHHHhhhh-------cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 91 --KAHVGE---------SEKALREA-FSQASSHAL-------SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 91 --~~~~~~---------~~~~~~~~-~~~~~~~~~-------~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
..+.+. ......+. +........ ..++.||+|||+=.+.. .........|..++.
T Consensus 88 ~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~------~~~~~f~~~L~~~l~ 161 (519)
T PF03215_consen 88 QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH------RDTSRFREALRQYLR 161 (519)
T ss_pred ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc------hhHHHHHHHHHHHHH
Confidence 001100 00111111 111111111 13567999999743321 112233344444444
Q ss_pred cCCCCCCCCCeEEEEEE-cCC------C--------CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC
Q 013506 152 SNKPSKTSVPHVVVVAS-TNR------V--------DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV 210 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~-~~~------~--------~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~ 210 (441)
.... .| ++||.+ +.. . ..+++.+....+. ..|.|.+-....+.+.+...+...
T Consensus 162 ~~~~----~P-lV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 162 SSRC----LP-LVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKE 229 (519)
T ss_pred cCCC----CC-EEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHH
Confidence 3221 13 444444 211 1 1356666654344 479999999988888777665543
No 329
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=2e-08 Score=92.16 Aligned_cols=126 Identities=18% Similarity=0.123 Sum_probs=80.5
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc-------eE-----
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS-------FF----- 353 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~-------~~----- 353 (441)
...+..+.|++.+...+...+.. + ..+..+||+||+|+||||+|+.+|+.+.+. ..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 34677889999999988887753 1 122348999999999999999999988651 10
Q ss_pred -Eech---------hhhh---hhc-c--C-----chHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcc
Q 013506 354 -SLSG---------AELY---SMY-V--G-----ESEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSIT 408 (441)
Q Consensus 354 -~i~~---------~~~~---~~~-~--g-----~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~ 408 (441)
.... .+++ ..+ . + -+.+.++.+.+.. ..+...|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 0000 0110 000 0 0 0123445444433 23456799999999984
Q ss_pred hhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 409 VGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 409 ~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
....+.||+.|+..+....+|+++.+.
T Consensus 155 --~~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 155 --RNAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred --HHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 355789999999866665666665544
No 330
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.88 E-value=2.6e-08 Score=96.10 Aligned_cols=199 Identities=16% Similarity=0.203 Sum_probs=115.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE---CGAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~---l~~~~~~v~~~~~~~~ 92 (441)
..|++++|.....+.+.+.+... .....+|+|+|++||||+++|+.+-.. -+.+++.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 55788999999888888776431 124578999999999999999999764 3568999999876432
Q ss_pred cccchHHHHHHHHHH-------HH-----hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC----
Q 013506 93 HVGESEKALREAFSQ-------AS-----SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---- 156 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~-------~~-----~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 156 (441)
.. -..+|.. +. ........+.|||||++.| +...+..|+..++.....
T Consensus 278 ll------eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~L----------p~~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LL------EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEM----------PLPLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HH------HHHhcCCcccccccccccccccchhhcCCceEEecChHhC----------CHHHHHHHHHHHhcCcEEecCC
Confidence 11 0112211 00 0001123578999999987 446778888888653311
Q ss_pred -CCCCCeEEEEEEcCCCC-------ccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhccC----CCCCccc-HHH
Q 013506 157 -KTSVPHVVVVASTNRVD-------AIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKKV----PLDANVD-LEA 220 (441)
Q Consensus 157 -~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~~~----~~~~~~~-~~~ 220 (441)
.....++.+|++++..- .+.+.+.. |+. ..+.+|+... ++...++..++.+. ......+ +..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 11122457888876642 22333333 443 3445555432 23334444444432 1111111 222
Q ss_pred -------HHHHCCCCCHHHHHHHHHHHHHH
Q 013506 221 -------IATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 221 -------l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+.......+-++++++++.++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 44444555778888888877654
No 331
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.88 E-value=2.3e-08 Score=93.13 Aligned_cols=206 Identities=21% Similarity=0.233 Sum_probs=121.0
Q ss_pred ccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcc
Q 013506 13 EKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSV 89 (441)
Q Consensus 13 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~ 89 (441)
.+...|++|+|.......+.+.+... -+...+||+.|++||||..+|+++-+.- +.||+.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 34467899999988888877766441 2356789999999999999999996644 679999999876
Q ss_pred cccccc-chHHHHHHHHHHHHhh-----hhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcC-----CCCCC
Q 013506 90 HKAHVG-ESEKALREAFSQASSH-----ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSN-----KPSKT 158 (441)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 158 (441)
....+. +.-......|--+... ......+-||+|||..| +...+..|++.++.. .+...
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem----------pl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM----------PLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC----------CHHHHHHHHHHHhhceEEecCCCCc
Confidence 543211 1111111112222211 01123468999999877 456778888887652 23333
Q ss_pred CCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHHHH----H----HHHHhccCCCCC----cccHH
Q 013506 159 SVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEERFE----I----LKLYTKKVPLDA----NVDLE 219 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~~~----i----l~~~~~~~~~~~----~~~~~ 219 (441)
...++.+|++||..- .+-..+-- |.+ ++.+..|...+|.+ + +..+.+.+.... +.-+.
T Consensus 378 ~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 378 IPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred eeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 445799999999731 11122211 332 44455554444432 2 222223332221 11244
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q 013506 220 AIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 220 ~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+...-..-+-|+++++++++..
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHh
Confidence 44555555677888888888764
No 332
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.87 E-value=5.4e-08 Score=97.97 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=113.1
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH 93 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~ 93 (441)
.|++++|.....+.+.+.+... .....+|+|+|++||||+++|+++.... +.+++.++|..+....
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 5678888887777666655331 1345689999999999999999998764 4689999997754211
Q ss_pred ccchHHHHHHHHHHH---H-----hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC-----CCC
Q 013506 94 VGESEKALREAFSQA---S-----SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-----TSV 160 (441)
Q Consensus 94 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~ 160 (441)
.-.++|... . .......++.|||||++.| +...+..|+..++...... ...
T Consensus 392 ------~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 455 (638)
T PRK11388 392 ------LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL----------SPELQSALLQVLKTGVITRLDSRRLIP 455 (638)
T ss_pred ------HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC----------CHHHHHHHHHHHhcCcEEeCCCCceEE
Confidence 011122111 0 0011224678999999987 4467778888876533111 111
Q ss_pred CeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHH----HHHHHHHhccC----CCCCccc---HHHHH
Q 013506 161 PHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTKKV----PLDANVD---LEAIA 222 (441)
Q Consensus 161 ~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~----~~il~~~~~~~----~~~~~~~---~~~l~ 222 (441)
.++.+|++++... .+.+.+.- |+. .+.+..|...+| ..++..++... ......+ +..+.
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 2577888887632 22333332 332 344555554444 33344433322 1111122 44555
Q ss_pred HHCCCCCHHHHHHHHHHHHH
Q 013506 223 TSCNGYVGADLEALCREATM 242 (441)
Q Consensus 223 ~~~~g~~~~~i~~l~~~a~~ 242 (441)
.....-+.++++++++.+..
T Consensus 533 ~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 533 SYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred cCCCCChHHHHHHHHHHHHH
Confidence 55555677888888887664
No 333
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.8e-08 Score=93.19 Aligned_cols=95 Identities=23% Similarity=0.272 Sum_probs=70.9
Q ss_pred ce-EEEECCCCCcHHHHHHHHHHHcC------------------------CceEEechhhhhhhccCchHHHHHHHHHHH
Q 013506 325 RG-ALLHGPPGCSKTTLAKAAAHAAE------------------------ASFFSLSGAELYSMYVGESEALLRNTFQRA 379 (441)
Q Consensus 325 ~~-~ll~Gp~GtGKTtla~~la~~~~------------------------~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a 379 (441)
.| +||+||||+|||++|.++|+.+. .++++++.++... ..-..+.++.+-+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~--~~i~~~~vr~~~~~~ 101 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRK--IDIIVEQVRELAEFL 101 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCC--CcchHHHHHHHHHHh
Confidence 35 89999999999999999999887 5788888888655 223455566655554
Q ss_pred Hh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 380 RL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 380 ~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.. .+..|++|||+|.+.. .+.+.|++.|+..+ ...++|+.+|
T Consensus 102 ~~~~~~~~~kviiidead~mt~--------------~A~nallk~lEep~-~~~~~il~~n 147 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLTE--------------DAANALLKTLEEPP-KNTRFILITN 147 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHhH--------------HHHHHHHHHhccCC-CCeEEEEEcC
Confidence 32 3567999999999863 66899999998744 4555555555
No 334
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.86 E-value=9.5e-08 Score=83.64 Aligned_cols=207 Identities=19% Similarity=0.232 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEccCccccc
Q 013506 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHSVHKA 92 (441)
Q Consensus 22 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---------~~~~~v~~~~~~~~ 92 (441)
+|...+++.|...-.. +..|+ .....+++|+|++|.|||++++.+.+... .+++.+.+..-.+.
T Consensus 37 IgY~~A~~~L~~L~~L-l~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKEALDRLEEL-LEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHHHHHHHHHH-HhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 6666665555543321 11111 12336899999999999999999987653 24555544321110
Q ss_pred ---c------cc---chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCC
Q 013506 93 ---H------VG---ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSV 160 (441)
Q Consensus 93 ---~------~~---~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 160 (441)
+ .+ ....................+..+|+|||+|.++.... ..+..+++.+....... ..
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-------~~qr~~Ln~LK~L~NeL-~i 181 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-------RKQREFLNALKFLGNEL-QI 181 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-------HHHHHHHHHHHHHhhcc-CC
Confidence 0 00 00001111112222222233477999999999764221 22333333333221111 11
Q ss_pred CeEEEEEEcCCCC--ccCHHHhhCCccceEEEecCCCHH-HHHHHHHHHhccCCCCCc------ccHHHHHHHCCCCCHH
Q 013506 161 PHVVVVASTNRVD--AIDPALRRSGRFDAEVEVTVPTAE-ERFEILKLYTKKVPLDAN------VDLEAIATSCNGYVGA 231 (441)
Q Consensus 161 ~~~~vi~~~~~~~--~l~~~l~~~~r~~~~i~~~~p~~~-~~~~il~~~~~~~~~~~~------~~~~~l~~~~~g~~~~ 231 (441)
.++.++|..... .-|+.+.+ ||. .+.+|....+ +-.+++..+...+++... .-...+...+.|.. +
T Consensus 182 -piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G 256 (302)
T PF05621_consen 182 -PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-G 256 (302)
T ss_pred -CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-H
Confidence 244555433333 33677777 996 5666666443 445566665555543321 11455666666654 5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 013506 232 DLEALCREATMSAVKRS 248 (441)
Q Consensus 232 ~i~~l~~~a~~~~~~~~ 248 (441)
++..++..+...+....
T Consensus 257 ~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 257 ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67777777777766643
No 335
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.86 E-value=2.5e-08 Score=91.97 Aligned_cols=119 Identities=26% Similarity=0.315 Sum_probs=72.6
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----ceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-----~~~~i~~~~~~ 361 (441)
..++++.|.+.+.+.+..++.. + ...+++|+||||||||++++.++..+.. .++.++.++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 4677788888888888877642 1 1236899999999999999999998732 34455443321
Q ss_pred hhccCchHHHHHHHHHHH--HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 362 SMYVGESEALLRNTFQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a--~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
+ .......+....... ....+.+++|||+|.+.. ...+.|+..++.......+|+.+
T Consensus 81 ~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 81 G--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred c--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCCCCeEEEEe
Confidence 1 111112222221111 112356999999998842 23567788888766655444443
No 336
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.86 E-value=1.8e-08 Score=99.07 Aligned_cols=140 Identities=19% Similarity=0.289 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccCccccccccchHHHHHHHHHHHH-----hhhhcCCCeEEEEcccc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHKAHVGESEKALREAFSQAS-----SHALSGKPSVVFIDEID 126 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~il~iDe~~ 126 (441)
.+|||.|+||||||++++.++..++. +++.+..........+.. .+...+.... .........+||+||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 58999999999999999999998764 477766433222222321 1111111100 00111235699999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhcCC------C-CCCCCCeEEEEEEcCCCC---ccCHHHhhCCccceEEEec-CCC
Q 013506 127 ALCPRRDHRREQDVRIASQLFTLMDSNK------P-SKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAEVEVT-VPT 195 (441)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~~~i~~~-~p~ 195 (441)
.+ +...+..|+..++... + .......+.+|+++|+.+ .+++.+.. ||...+.+. .++
T Consensus 95 rl----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 95 LL----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred hC----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 88 4477888888887543 1 111123578899999865 78899998 998766654 456
Q ss_pred HHHHHHHHHHHh
Q 013506 196 AEERFEILKLYT 207 (441)
Q Consensus 196 ~~~~~~il~~~~ 207 (441)
.+++.+|++...
T Consensus 163 ~~er~eil~~~~ 174 (589)
T TIGR02031 163 QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHH
Confidence 777888887654
No 337
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.86 E-value=4.4e-09 Score=84.01 Aligned_cols=82 Identities=24% Similarity=0.286 Sum_probs=53.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh------hccCc---hHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS------MYVGE---SEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~------~~~g~---~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
+++|+||||||||++|+.+|+.++.+++.+.++.... .|.-. .+-.-..+.+.+ ..+.++||||++++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 5899999999999999999999999998888765322 22211 000000111111 156799999999874
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 397 AKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 397 ~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
..+++.|+..|++
T Consensus 79 --------------~~v~~~L~~ll~~ 91 (139)
T PF07728_consen 79 --------------PEVLESLLSLLEE 91 (139)
T ss_dssp --------------HHHHHTTHHHHSS
T ss_pred --------------HHHHHHHHHHHhh
Confidence 3677777777775
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=98.86 E-value=4.6e-07 Score=91.28 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=26.8
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.+.++..+.++||||+|||||.++++...
T Consensus 529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 529 NFGIDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456677889999999999999999999875
No 339
>PRK08116 hypothetical protein; Validated
Probab=98.85 E-value=3.6e-08 Score=87.30 Aligned_cols=123 Identities=19% Similarity=0.275 Sum_probs=67.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc----hHHHHHHHHHHHHhhhhcCCCeEEEEccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE----SEKALREAFSQASSHALSGKPSVVFIDEI 125 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~il~iDe~ 125 (441)
+.+++|+|++|||||+|+.++++.+ +.++++++..++....... .......++... ...++|+|||+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l------~~~dlLviDDl 187 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL------VNADLLILDDL 187 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh------cCCCEEEEecc
Confidence 4579999999999999999999876 5667777765543221100 000111111111 23569999998
Q ss_pred cccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC-CCc----cCHHHhhCCcc---ceEEEecCCCH
Q 013506 126 DALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR-VDA----IDPALRRSGRF---DAEVEVTVPTA 196 (441)
Q Consensus 126 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~-~~~----l~~~l~~~~r~---~~~i~~~~p~~ 196 (441)
.... ........++..++..... ...+|.|+|. +.. ++.++.+ |+ ...+.++.++.
T Consensus 188 g~e~--------~t~~~~~~l~~iin~r~~~-----~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 188 GAER--------DTEWAREKVYNIIDSRYRK-----GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred cCCC--------CCHHHHHHHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 5321 1123345566666543211 1234555554 333 3556666 54 33566666664
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=98.85 E-value=1.5e-07 Score=92.88 Aligned_cols=29 Identities=34% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++..+.++||||+|||||+++++...
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45667789999999999999999999876
No 341
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=1.9e-08 Score=92.74 Aligned_cols=125 Identities=17% Similarity=0.104 Sum_probs=80.9
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE------------
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF------------ 353 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~------------ 353 (441)
...+.++.|++.+++.+...+.. + +.+..+||+||+|+||+++|..+|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 34677889999999998887763 1 22334899999999999999999998743210
Q ss_pred -----Eech---------hhhhhhc---cCc--------hHHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCC
Q 013506 354 -----SLSG---------AELYSMY---VGE--------SEALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSS 404 (441)
Q Consensus 354 -----~i~~---------~~~~~~~---~g~--------~~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~ 404 (441)
.+.. +|+..-. ... ..+.++.+.+.+ ..+.+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 0000 0110000 000 124466655554 34567799999999884
Q ss_pred CCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 405 TSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 405 ~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
....|.||+.|+..+....+|+++.+
T Consensus 155 ------~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 155 ------ANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred ------HHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 36689999999976555555555544
No 342
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.84 E-value=5.3e-08 Score=94.85 Aligned_cols=198 Identities=17% Similarity=0.165 Sum_probs=111.9
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHK 91 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~ 91 (441)
...|++++|.....+.+.+.+... .....+|+|+|++||||+++|+++-... ..+++.++|..+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 357789999888777666655321 1235679999999999999999986543 35889999987642
Q ss_pred ccccchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC----
Q 013506 92 AHVGESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---- 156 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 156 (441)
... -..+|.... .......++.|||||++.| +...+..|+..+......
T Consensus 269 ~~~------e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L----------~~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 269 DVV------ESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEM----------SPRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHH------HHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhC----------CHHHHHHHHHHHhcCCcccCCC
Confidence 110 011221100 0001123678999999987 446677788877653211
Q ss_pred -CCCCCeEEEEEEcCCCC-------ccCHHHhhCCccceEEEecCCCHHHH----HHHHHHHhc----cCCCC-Cccc--
Q 013506 157 -KTSVPHVVVVASTNRVD-------AIDPALRRSGRFDAEVEVTVPTAEER----FEILKLYTK----KVPLD-ANVD-- 217 (441)
Q Consensus 157 -~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~~~i~~~~p~~~~~----~~il~~~~~----~~~~~-~~~~-- 217 (441)
.....++.+|++++..- .+.+.+.. |+. .+.+..|...+| ..++..++. +.... ....
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 11123567888776532 34455655 554 344444444333 333333332 22221 1122
Q ss_pred -HHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 218 -LEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 218 -~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
+..+......-+-+++++++..+..
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3444444344567777777776654
No 343
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=4.6e-08 Score=89.96 Aligned_cols=205 Identities=21% Similarity=0.275 Sum_probs=121.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~ 92 (441)
.....|+|...+...+.+.+..- . +...+|||.|++||||-.+|++|-..- ..+++.+||..+...
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~V-A----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVV-A----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHH-h----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 35578999999988888877542 1 245789999999999999999987654 578999999886543
Q ss_pred cc-cchHHHHHHHHH----HHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----CCCCCCCe
Q 013506 93 HV-GESEKALREAFS----QASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PSKTSVPH 162 (441)
Q Consensus 93 ~~-~~~~~~~~~~~~----~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~ 162 (441)
.. ++.-...+..|- .-........++-||+|||-.| +...+..|++.+.... +...-..+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel----------PL~lQaKLLRvLQegEieRvG~~r~ikVD 358 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL----------PLALQAKLLRVLQEGEIERVGGDRTIKVD 358 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccC----------CHHHHHHHHHHHhhcceeecCCCceeEEE
Confidence 21 111111112222 2222222334678999999766 4467788888776533 22223346
Q ss_pred EEEEEEcCCCCccCHHHhhCCccc-------eEEEecCCCHHHH-------HHH-HHHHhccCCC-CCcc---cHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFD-------AEVEVTVPTAEER-------FEI-LKLYTKKVPL-DANV---DLEAIAT 223 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~-------~~i~~~~p~~~~~-------~~i-l~~~~~~~~~-~~~~---~~~~l~~ 223 (441)
+.+|++||+- +...+. .|+|- .++-+..|...+| ... ++.+...... .... -++.+..
T Consensus 359 VRiIAATNRD--L~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 359 VRVIAATNRD--LEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEeccchh--HHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 8999999983 222221 22332 1222333333333 222 2222233332 1111 2455555
Q ss_pred HCCCCCHHHHHHHHHHHHHHH
Q 013506 224 SCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 224 ~~~g~~~~~i~~l~~~a~~~~ 244 (441)
....-+-++++++++++...+
T Consensus 436 y~wPGNVRELen~veRavlla 456 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh
Confidence 555567899999999988766
No 344
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.7e-08 Score=90.66 Aligned_cols=29 Identities=38% Similarity=0.539 Sum_probs=25.5
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVR 75 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~~~l~~ 75 (441)
++.+..++..-|||++|+|||||.|+|++
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 34456788999999999999999999998
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.83 E-value=1e-08 Score=94.33 Aligned_cols=84 Identities=26% Similarity=0.343 Sum_probs=60.7
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh--ccCchHHHHH------------HHHHHHHhcCCeEE
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM--YVGESEALLR------------NTFQRARLAAPSII 387 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~--~~g~~~~~~~------------~~~~~a~~~~~~vl 387 (441)
..++|++|.||||||||++|+.+|+.++.+++.+.++..... .+|...-..+ -+|.... +++
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~il 116 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VIL 116 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEE
Confidence 346789999999999999999999999999999998764432 1222211111 1222222 499
Q ss_pred EEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 388 ~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|+|||.+..+ .+.+.||..|+.
T Consensus 117 l~DEInra~p--------------~~q~aLl~~l~e 138 (329)
T COG0714 117 LLDEINRAPP--------------EVQNALLEALEE 138 (329)
T ss_pred EEeccccCCH--------------HHHHHHHHHHhC
Confidence 9999999864 567888888886
No 346
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.83 E-value=4.8e-08 Score=92.81 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=65.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhh----------hhccC--------chHHHHHHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELY----------SMYVG--------ESEALLRNTFQRAR 380 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~----------~~~~g--------~~~~~~~~~~~~a~ 380 (441)
+.+++++||||||||++++.++..+ +..++.+++.... ....+ ...+.+..+.+...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999876 4567777764321 11111 12333444444443
Q ss_pred h-cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 L-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~-~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
. ..+.||+|||+|.+... . ...++..|+..++........+|+.+|
T Consensus 135 ~~~~~~viviDE~d~l~~~-~---------~~~~l~~l~~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEK-E---------GNDVLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred hcCCEEEEEECCHhHhhcc-C---------CchHHHHHHHhhhccCCCeEEEEEEEC
Confidence 2 34579999999998721 1 125678888877766554444444433
No 347
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.82 E-value=1.6e-07 Score=91.82 Aligned_cols=97 Identities=20% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh--------------c--------c------Cch
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM--------------Y--------V------GES 368 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~--------------~--------~------g~~ 368 (441)
|++++..+++.|+||+|||+++..++... +.+++.+...+.... + . ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 67778888999999999999998776533 455555433211100 0 0 001
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 369 EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 369 ~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
+..+..+.+.....++.+++||-+..+.... ......+.+..|+..+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~~~~k 396 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLTDYLK 396 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHHHHHH
Confidence 2333444444555677899999988776321 11112445556666654
No 348
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.8e-08 Score=91.63 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=63.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCc------------------------eEEechhhhhhhccCchHHHHHHHHHHHH
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQRAR 380 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~ 380 (441)
..+||+||+|+|||++|+.+|..+.+. ++.+...+- +. .-..+.+|++.+.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~~ 99 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFVV 99 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHHh
Confidence 357899999999999999999988552 222221100 00 012355666665553
Q ss_pred ----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 ----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+...|++|||+|++. ....|.||+.|+..+.....|+++++
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred hccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 3556799999999984 36789999999986654444444443
No 349
>PHA02244 ATPase-like protein
Probab=98.81 E-value=2.5e-08 Score=89.86 Aligned_cols=71 Identities=20% Similarity=0.339 Sum_probs=47.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechh----hhhhhccCchHHHH-HHHHHHHHhcCCeEEEEeccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA----ELYSMYVGESEALL-RNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~----~~~~~~~g~~~~~~-~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
+.+++|.||||||||++|+++|..++.+++.++.. ++.+ ++.....-. ..++..+ ....++||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF--KKGGLFFIDEIDASIP 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh--hcCCEEEEeCcCcCCH
Confidence 44699999999999999999999999999988742 1111 111111100 1222322 3456999999998854
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.80 E-value=2e-08 Score=84.62 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=61.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc------------------------eEEechhhhhhhccCchHHHHHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQRA 379 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a 379 (441)
+..+||+||+|+|||++|+.++..+.+. +..+... + ..-..+.++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~--~~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---G--QSIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---c--CcCCHHHHHHHHHHH
Confidence 3458999999999999999999987542 1111110 0 001235666667666
Q ss_pred Hh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 380 RL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 380 ~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
.. ....|+||||+|.+. ....+.||+.|+..++...+|+++.
T Consensus 89 ~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred ccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 43 445699999999884 2457889999998655444444443
No 351
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.79 E-value=2.3e-07 Score=91.87 Aligned_cols=62 Identities=32% Similarity=0.433 Sum_probs=43.5
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEe
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i 355 (441)
...++++.|.....+.+...+.. ..+.+++|+|||||||||+|+++++.. +.+++.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 34567777877666655443321 224579999999999999999998765 3467888
Q ss_pred chhhh
Q 013506 356 SGAEL 360 (441)
Q Consensus 356 ~~~~~ 360 (441)
++..+
T Consensus 217 ~~~~l 221 (615)
T TIGR02903 217 DGTTL 221 (615)
T ss_pred echhc
Confidence 87654
No 352
>PF13173 AAA_14: AAA domain
Probab=98.79 E-value=5.4e-08 Score=76.27 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=70.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECG--AHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCP 130 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~ 130 (441)
...++|+||.||||||+++.++..+. .++++++..+.......... +...+.+. ...++.++||||++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~~- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYLP- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhhc-
Confidence 35689999999999999999998876 67788877654332111100 12222221 11246799999998762
Q ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc----CHHHhhCCccceEEEecCCCHHH
Q 013506 131 RRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI----DPALRRSGRFDAEVEVTVPTAEE 198 (441)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l----~~~l~~~~r~~~~i~~~~p~~~~ 198 (441)
.+...+..+.+.. +++.++.|++....+ ...+ .||.. .+.+.+.+..|
T Consensus 75 ----------~~~~~lk~l~d~~-------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ----------DWEDALKFLVDNG-------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred ----------cHHHHHHHHHHhc-------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 3444444555533 134555554443322 2233 23664 68888887765
No 353
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.79 E-value=4.3e-08 Score=92.12 Aligned_cols=126 Identities=22% Similarity=0.262 Sum_probs=74.3
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC---------CceEEechhhhh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE---------ASFFSLSGAELY 361 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~---------~~~~~i~~~~~~ 361 (441)
.+.+.+...+.+...+...+. + ..+.+++++||||||||++++.++..+. ..++.+++....
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 456666666666665543211 1 2345799999999999999999987652 356677764422
Q ss_pred hh----------cc--C--------chHHHHHHHHHHHHh-cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHH
Q 013506 362 SM----------YV--G--------ESEALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTE 420 (441)
Q Consensus 362 ~~----------~~--g--------~~~~~~~~~~~~a~~-~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~ 420 (441)
+. .. + ...+.++.+++.... ..+.||+|||+|.+... .+.++..|+..
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~~ 155 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSRA 155 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhcc
Confidence 11 10 1 112334555555432 45679999999999721 12456677766
Q ss_pred --hcCCCCCCeEEEEeee
Q 013506 421 --MDGLEQAKVIIYPISF 436 (441)
Q Consensus 421 --l~~~~~~~~v~~~~~~ 436 (441)
....++...++|+.+|
T Consensus 156 ~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISN 173 (365)
T ss_pred ccccCCCCCeEEEEEEEC
Confidence 3344434455555554
No 354
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.78 E-value=1.3e-09 Score=82.31 Aligned_cols=77 Identities=32% Similarity=0.390 Sum_probs=46.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechh------hhhhhccCchHHH-----HHHHHHHHHhcCCeEEEEecccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA------ELYSMYVGESEAL-----LRNTFQRARLAAPSIIFFDEADV 394 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~------~~~~~~~g~~~~~-----~~~~~~~a~~~~~~vl~iDE~d~ 394 (441)
|+||.|+||+|||++|+++|..++..+.++..+ |+.+..+-+.+.. -.-+| ..|+++||+-.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 789999999999999999999999999888763 3333211111100 01122 13999999998
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 395 VGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 395 ~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
..| +.-+.||+.|..
T Consensus 74 app--------------ktQsAlLeam~E 88 (131)
T PF07726_consen 74 APP--------------KTQSALLEAMEE 88 (131)
T ss_dssp S-H--------------HHHHHHHHHHHH
T ss_pred CCH--------------HHHHHHHHHHHc
Confidence 865 567888888873
No 355
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.76 E-value=3.4e-08 Score=85.50 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=67.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCc---hHHHHHHHHHHHHhcCCeEEEEecccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE---SEALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~---~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~ 398 (441)
.+++|+|+||||||+++.++|..+ +..++.++.+++....... .......+++.. ....+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC--
Confidence 479999999999999999999887 6788888888887643221 112233455543 246699999998764
Q ss_pred cCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 399 r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
.+.+...++..++..- .....-+|+.||+
T Consensus 176 -------~s~~~~~~l~~Ii~~R---y~~~~~tiitSNl 204 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRR---SSSKRPTGMLTNS 204 (244)
T ss_pred -------CCHHHHHHHHHHHHHH---HhCCCCEEEeCCC
Confidence 2234455666666543 2334567777875
No 356
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.76 E-value=1.9e-08 Score=96.63 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=50.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHHH-HHHHHHHHHhcCCeEEEEeccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEAL-LRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~~-~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
..++|+||+|+|||+|+++++..+ +..++.++..++...+....... ...+.+..+ ...+|+|||++.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAG 225 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcC
Confidence 458999999999999999999887 45688888888766554333221 222222222 466999999999863
No 357
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.75 E-value=3.6e-07 Score=78.56 Aligned_cols=135 Identities=19% Similarity=0.231 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~ 132 (441)
..+..++||+|||||+.++.+++.++..++.+++.+..+ ...+..++.-.... +.++++||+|.+-.+.
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-----GaW~cfdefnrl~~~v 100 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-----GAWLCFDEFNRLSEEV 100 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-----T-EEEEETCCCSSHHH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-----CchhhhhhhhhhhHHH
Confidence 456789999999999999999999999999999877332 34455556554443 7899999999873211
Q ss_pred CCCchhhHHHHHHHHHHHhcCCC-------CCCCCCeEEEEEEcCCC----CccCHHHhhCCccceEEEecCCCHHHHHH
Q 013506 133 DHRREQDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRV----DAIDPALRRSGRFDAEVEVTVPTAEERFE 201 (441)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~vi~~~~~~----~~l~~~l~~~~r~~~~i~~~~p~~~~~~~ 201 (441)
- +.-...+..+...+..... ...-.++.-+..|+|+. ..+|+.++. -| +.+.+..||.....+
T Consensus 101 L---S~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~~I~e 174 (231)
T PF12774_consen 101 L---SVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLSLIAE 174 (231)
T ss_dssp H---HHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HHHHHH
T ss_pred H---HHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHHHHHH
Confidence 0 0000111222222221110 01112344556667653 378888875 44 579999999888766
Q ss_pred HHH
Q 013506 202 ILK 204 (441)
Q Consensus 202 il~ 204 (441)
++-
T Consensus 175 i~L 177 (231)
T PF12774_consen 175 ILL 177 (231)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 358
>PRK08181 transposase; Validated
Probab=98.75 E-value=1.3e-08 Score=89.38 Aligned_cols=87 Identities=25% Similarity=0.371 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.+.+++|+||||||||+|+.+++..+ +..+++++..++....... ........+... .+.++|+|||+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l------~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL------DKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH------hcCCEEEEecccc
Confidence 45789999999999999999998755 5566666665543321100 000111222221 2367999999976
Q ss_pred cccCCCCCchhhHHHHHHHHHHHhc
Q 013506 128 LCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 128 l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
+.. +......++.+++.
T Consensus 179 ~~~--------~~~~~~~Lf~lin~ 195 (269)
T PRK08181 179 VTK--------DQAETSVLFELISA 195 (269)
T ss_pred ccC--------CHHHHHHHHHHHHH
Confidence 532 12334555665554
No 359
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=4.1e-08 Score=76.92 Aligned_cols=98 Identities=23% Similarity=0.198 Sum_probs=62.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC--CceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGS 402 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~--~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~ 402 (441)
..+++.||.||||||+++.++..+. .+.+.++..+.........+ +.+.+.+.....+.++||||+..+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3578999999999999999998776 77777777665442111111 22333332223567999999998731
Q ss_pred CCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeeeec
Q 013506 403 SSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIFQL 440 (441)
Q Consensus 403 ~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~~~ 440 (441)
....+..+.. ......+++.||+...+
T Consensus 76 -------~~~~lk~l~d----~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 76 -------WEDALKFLVD----NGPNIKIILTGSSSSLL 102 (128)
T ss_pred -------HHHHHHHHHH----hccCceEEEEccchHHH
Confidence 1233333332 23456888888876543
No 360
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.75 E-value=7.1e-09 Score=85.82 Aligned_cols=45 Identities=38% Similarity=0.544 Sum_probs=35.5
Q ss_pred cccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.++.|++.+|..+.-... + +.|+|++||||||||++|+.+..++
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 5678899999998775543 2 3589999999999999999999988
No 361
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.75 E-value=4.9e-08 Score=95.07 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=44.0
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEe
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSL 355 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i 355 (441)
...++++.|.....+.+...+. -..+.+++|+||||||||++|+++.+.+ +.+++.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 3467788888877766654321 1234589999999999999999998652 3578888
Q ss_pred chh
Q 013506 356 SGA 358 (441)
Q Consensus 356 ~~~ 358 (441)
+++
T Consensus 128 d~~ 130 (531)
T TIGR02902 128 DAT 130 (531)
T ss_pred ccc
Confidence 875
No 362
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.74 E-value=8.8e-08 Score=95.84 Aligned_cols=176 Identities=20% Similarity=0.147 Sum_probs=96.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHh--------cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQK--------LGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~ 90 (441)
..|.|.+.+|+.|.-.+.--......... ..+...-+|||+|+||||||.+++.+........ ++++..+.
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s 528 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSS 528 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCc
Confidence 46788888888775444211100000000 1233445999999999999999999988654322 11221111
Q ss_pred cccccchHHHHH---HHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-------CCCC
Q 013506 91 KAHVGESEKALR---EAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------KTSV 160 (441)
Q Consensus 91 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~ 160 (441)
............ .-+..-.........++|+|||++.+ +...+..|+..++..... ..-.
T Consensus 529 ~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ 598 (915)
T PTZ00111 529 SVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC----------HNESRLSLYEVMEQQTVTIAKAGIVATLK 598 (915)
T ss_pred cccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC----------CHHHHHHHHHHHhCCEEEEecCCcceecC
Confidence 100000000000 00000000111233579999999987 335667778887654311 1122
Q ss_pred CeEEEEEEcCCCC-------------ccCHHHhhCCccceEE-EecCCCHHHHHHHHHHHh
Q 013506 161 PHVVVVASTNRVD-------------AIDPALRRSGRFDAEV-EVTVPTAEERFEILKLYT 207 (441)
Q Consensus 161 ~~~~vi~~~~~~~-------------~l~~~l~~~~r~~~~i-~~~~p~~~~~~~il~~~~ 207 (441)
.++.||+++|+.+ .+++.+++ ||+.++ .++.|+.+.=..|..+.+
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 4689999999853 56789999 998654 466666665555554444
No 363
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=4.8e-08 Score=89.52 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=75.4
Q ss_pred cccccC-chhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCce-------EEec----
Q 013506 289 WEDIGG-LRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------FSLS---- 356 (441)
Q Consensus 289 ~~~i~g-~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~-------~~i~---- 356 (441)
|..+.| ++.+.+.+...+.. + ..+..+||+||+|+||+++|+.+|..+-+.- -.+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~-----------~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAK-----------N-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 445555 77777777776542 1 2233469999999999999999999874321 0000
Q ss_pred -----hhhhhh-hccCc--hHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 357 -----GAELYS-MYVGE--SEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 357 -----~~~~~~-~~~g~--~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
-+|+.- ...|. ..+.++.+.+.+. .+...|++|||+|.+- ....|.||+.|+..
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK~LEEP 137 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLKFLEEP 137 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHHHhcCC
Confidence 011100 00111 1345666665543 3445699999999873 46789999999986
Q ss_pred CCCCeEEEEeee
Q 013506 425 EQAKVIIYPISF 436 (441)
Q Consensus 425 ~~~~~v~~~~~~ 436 (441)
++....|+++++
T Consensus 138 p~~~~~Il~t~~ 149 (329)
T PRK08058 138 SGGTTAILLTEN 149 (329)
T ss_pred CCCceEEEEeCC
Confidence 655555555444
No 364
>PRK09183 transposase/IS protein; Provisional
Probab=98.74 E-value=1.8e-08 Score=88.72 Aligned_cols=74 Identities=26% Similarity=0.316 Sum_probs=51.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccC-chHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVG-ESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
..+.+++|+||||||||++|.+++..+ |..+..++..++...+.. .....+..+++... ..+.+++|||+....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCC
Confidence 345689999999999999999997664 667777777776643321 11123455665542 456699999998753
No 365
>PRK12377 putative replication protein; Provisional
Probab=98.74 E-value=6.2e-08 Score=84.12 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchH--HHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE--KALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
..+++|+||||||||+|+.++++.+ +..+++++..++......... ......+.. ..+.++|+|||+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~------l~~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQE------LCKVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHH------hcCCCEEEEcCCCC
Confidence 3689999999999999999999887 445666655443321110000 000111111 13468999999964
Q ss_pred c
Q 013506 128 L 128 (441)
Q Consensus 128 l 128 (441)
.
T Consensus 175 ~ 175 (248)
T PRK12377 175 Q 175 (248)
T ss_pred C
Confidence 3
No 366
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.73 E-value=6.8e-08 Score=94.56 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|+||+|+|||||++.+++.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999999998764
No 367
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=3.3e-08 Score=86.24 Aligned_cols=64 Identities=25% Similarity=0.283 Sum_probs=47.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+.+++|+||+|||||++|+.++..+ +.+++.++++++.... ..++... ....+|+|||++.+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIA 103 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhc
Confidence 45689999999999999999999876 4677888887765421 2233322 234599999999885
No 368
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.72 E-value=5.7e-08 Score=90.11 Aligned_cols=86 Identities=21% Similarity=0.390 Sum_probs=54.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc-------eEEech----hhhhhhc----cCch--HHHHHHHHHHHHhc--CC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS-------FFSLSG----AELYSMY----VGES--EALLRNTFQRARLA--AP 384 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~-------~~~i~~----~~~~~~~----~g~~--~~~~~~~~~~a~~~--~~ 384 (441)
+.+++|+||||||||++|+.+|..+... .+.... .+++..+ +|-. ...+.++++.|... .+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5689999999999999999999987532 222222 2222111 1111 11234556666543 47
Q ss_pred eEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 385 ~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.||||||++.... .+++.++++.|+
T Consensus 274 ~vliIDEINRani-------------~kiFGel~~lLE 298 (459)
T PRK11331 274 YVFIIDEINRANL-------------SKVFGEVMMLME 298 (459)
T ss_pred cEEEEehhhccCH-------------HHhhhhhhhhcc
Confidence 8999999998753 356666666665
No 369
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=5.6e-08 Score=87.92 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=80.0
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCce----------EEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASF----------FSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~----------~~i~~ 357 (441)
.|.++.|++.+++.+...+.. + +.+..+||+||.|+||+++|..+|..+-+.- -..+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 367889999999998888763 1 2234689999999999999999999874321 01111
Q ss_pred hhhhh--h-c--cCc--------------------hHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcc
Q 013506 358 AELYS--M-Y--VGE--------------------SEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSIT 408 (441)
Q Consensus 358 ~~~~~--~-~--~g~--------------------~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~ 408 (441)
+|+.- + | .|. ..+.++.+.+.+. .+...|++||++|++.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 12110 0 0 010 1234566655553 3456799999999884
Q ss_pred hhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 409 VGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 409 ~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
....|.||+.|+..+ ...+|+++++
T Consensus 138 --~~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 138 --EAAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred --HHHHHHHHHHHhCCC-CCeEEEEECC
Confidence 366899999999877 5555555444
No 370
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=8.2e-08 Score=83.36 Aligned_cols=92 Identities=13% Similarity=0.129 Sum_probs=54.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~ 401 (441)
..++|+||||||||++++++|..+ +..+..+...+... ....+++.. ....+|+|||++.+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCCh--
Confidence 357999999999999999999876 34444444432111 111233332 244699999999886321
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 402 SSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
. ..+.+-.+++.+. +....++++++|.
T Consensus 108 ------~-~~~~l~~l~n~~~--~~~~~illits~~ 134 (229)
T PRK06893 108 ------E-WELAIFDLFNRIK--EQGKTLLLISADC 134 (229)
T ss_pred ------H-HHHHHHHHHHHHH--HcCCcEEEEeCCC
Confidence 1 2233334444432 2344567777764
No 371
>PRK08181 transposase; Validated
Probab=98.71 E-value=5.3e-08 Score=85.64 Aligned_cols=99 Identities=19% Similarity=0.179 Sum_probs=64.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccC-chHHHHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVG-ESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g-~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
+.+++|+||||||||.+|.+++..+ |..++.++..++...+.. ..+....++++.. ..+.+|+|||+......
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 4579999999999999999998754 778888888887765421 1112233444443 34569999999876431
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
......+-.++...-+ . .=+|++||+
T Consensus 183 --------~~~~~~Lf~lin~R~~---~-~s~IiTSN~ 208 (269)
T PRK08181 183 --------QAETSVLFELISARYE---R-RSILITANQ 208 (269)
T ss_pred --------HHHHHHHHHHHHHHHh---C-CCEEEEcCC
Confidence 2233445555544322 2 347777775
No 372
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.71 E-value=1.1e-07 Score=75.00 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=61.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc--------CCceEEechhhhhhh--------------ccC-chHHH-HHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA--------EASFFSLSGAELYSM--------------YVG-ESEAL-LRNTFQRA 379 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~--------~~~~~~i~~~~~~~~--------------~~g-~~~~~-~~~~~~~a 379 (441)
.+.++++||+|+|||++++.++..+ ..+++.++.+..... ... .+... .+.+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 667777776543311 011 22333 33444444
Q ss_pred HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 380 RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 380 ~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
......+|+|||+|.+. ....++.|...++ +..-.+|++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 44444599999999974 1467788876666 555567776654
No 373
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=5.6e-08 Score=86.08 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=65.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhcc----CchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYV----GESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~----g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
+.+++|+|++|||||.||.+++..+ +.+++.++.+++...+. +........+++.. ....+|+|||+..--
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEecccCCC
Confidence 3469999999999999999999976 67888888888765432 11112222344333 233599999996421
Q ss_pred cccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 397 AKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 397 ~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
.. +...+.|...++.....+.-+|++||+
T Consensus 192 ---------~t---~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 192 ---------DT---EWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred ---------CC---HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 11 223455566666555566778888885
No 374
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=3.5e-08 Score=93.79 Aligned_cols=72 Identities=11% Similarity=0.189 Sum_probs=49.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchH-HHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESE-ALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~-~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
.+++|+||+|+|||+|+++++..+ +..++.++..++...+..... ..+....+. ....+.+|+|||++.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~-~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK-YRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHH-HHhcCCEEEEechhhhcC
Confidence 358999999999999999999875 456788888876654432211 122222222 223567999999998863
No 375
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.70 E-value=3.4e-08 Score=93.71 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=49.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHH-HHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
..++|+||+|+|||+|+++++..+ +..++.++..++...+...... .+....+.. ....+|+|||++.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 458999999999999999999876 5678888888776554332211 122222222 2356999999998863
No 376
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-07 Score=93.77 Aligned_cols=132 Identities=21% Similarity=0.281 Sum_probs=89.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCC-CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccc---
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHK--- 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~--- 91 (441)
+.|+||+++...|.+++..... .++- ++...++|.||.|+|||-+|+++|..+ ...++.++.+++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 4599999999999999865322 1111 356789999999999999999999987 23578888775332
Q ss_pred ---c---cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----CCCCCC
Q 013506 92 ---A---HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PSKTSV 160 (441)
Q Consensus 92 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~ 160 (441)
. +.+... ...+....... ..+|++|||++.. +..++..|+.+++..+ +...+.
T Consensus 636 ligsp~gyvG~e~--gg~Lteavrrr----P~sVVLfdeIEkA----------h~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVKRR----PYSVVLFEEIEKA----------HPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHhcC----CceEEEEechhhc----------CHHHHHHHHHHHhcCccccCCCcEeec
Confidence 1 222221 22223333322 3589999999865 4467777888887643 233445
Q ss_pred CeEEEEEEcCCC
Q 013506 161 PHVVVVASTNRV 172 (441)
Q Consensus 161 ~~~~vi~~~~~~ 172 (441)
.+++||+|+|.-
T Consensus 700 kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 700 KNAIFIMTSNVG 711 (898)
T ss_pred cceEEEEecccc
Confidence 689999998863
No 377
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.69 E-value=2.6e-08 Score=93.17 Aligned_cols=98 Identities=26% Similarity=0.357 Sum_probs=58.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC--ceE--Ee---chhhhhhhccCchHHHH--HHHHHHHHhc---CCeEEEE
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFF--SL---SGAELYSMYVGESEALL--RNTFQRARLA---APSIIFF 389 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~--~i---~~~~~~~~~~g~~~~~~--~~~~~~a~~~---~~~vl~i 389 (441)
..++|+||.||||||||++|++++...+. ++. .+ ..+++++.. +-... ..-|.....+ ...++|+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfL 113 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFL 113 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEee
Confidence 45779999999999999999999997743 222 22 233443321 00010 1112211111 2239999
Q ss_pred ecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC---------CCCeEEEEeee
Q 013506 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE---------QAKVIIYPISF 436 (441)
Q Consensus 390 DE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~v~~~~~~ 436 (441)
|||.++. ....+.||..|..-. -..+++++|||
T Consensus 114 DEI~ras--------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 114 DEIWKAG--------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred cccccCC--------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 9998664 367899999994311 12357777776
No 378
>PRK06526 transposase; Provisional
Probab=98.69 E-value=1.8e-08 Score=88.22 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.+.+++|+||||||||+++.+++..+ +..+..++..++....... ........+.. ..++++|+|||++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~------l~~~dlLIIDD~g~ 170 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK------LGRYPLLIVDEVGY 170 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH------hccCCEEEEccccc
Confidence 45789999999999999999998765 4444444443322211000 00011111111 12468999999986
Q ss_pred c
Q 013506 128 L 128 (441)
Q Consensus 128 l 128 (441)
+
T Consensus 171 ~ 171 (254)
T PRK06526 171 I 171 (254)
T ss_pred C
Confidence 5
No 379
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.69 E-value=9.6e-07 Score=80.71 Aligned_cols=193 Identities=21% Similarity=0.242 Sum_probs=117.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----C-cEEEEccCcccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----A-HLTVISPHSVHKAH 93 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----~-~~~~v~~~~~~~~~ 93 (441)
..+.|.|..+..+.+++..++. ...+..+++.|-||||||.+..-+...+. . ..+++++..+....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle---------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE---------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh---------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 5789999999999998865432 35678899999999999999987765542 2 34677776532210
Q ss_pred ---------------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 013506 94 ---------------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (441)
Q Consensus 94 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (441)
...........|...... ...+-++++||+|.|.... ..++..++.+-..
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q--~k~~~llVlDEmD~L~tr~-------~~vLy~lFewp~l------ 285 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQ--SKFMLLLVLDEMDHLITRS-------QTVLYTLFEWPKL------ 285 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc--ccceEEEEechhhHHhhcc-------cceeeeehhcccC------
Confidence 001111122222222211 1236799999999986322 1233333333222
Q ss_pred CCCeEEEEEEcCCCCccCH---HHhh-CCccceEEEecCCCHHHHHHHHHHHhccCCCCCc--ccHHHHHHHCCCCCHHH
Q 013506 159 SVPHVVVVASTNRVDAIDP---ALRR-SGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN--VDLEAIATSCNGYVGAD 232 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~~l~~---~l~~-~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~ 232 (441)
...++++|+.+|..+.-|. ++.. ..--...+.|++|+.++..+|+...+........ ..++..+....+.+ +|
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S-GD 364 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS-GD 364 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc-hh
Confidence 2226888998888764332 2222 1111257899999999999999998887765433 23666777776554 45
Q ss_pred HHHH
Q 013506 233 LEAL 236 (441)
Q Consensus 233 i~~l 236 (441)
++.+
T Consensus 365 lRka 368 (529)
T KOG2227|consen 365 LRKA 368 (529)
T ss_pred HHHH
Confidence 5443
No 380
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.68 E-value=8.5e-08 Score=76.24 Aligned_cols=107 Identities=30% Similarity=0.462 Sum_probs=63.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGA---HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l 128 (441)
...+|+|+|++||||+++|+++...... +++.+++.... .+.++.+ ++..|||+|++.+
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a-------~~gtL~l~~i~~L 81 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA-------KGGTLYLKNIDRL 81 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC-------TTSEEEEECGCCS
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc-------CCCEEEECChHHC
Confidence 4678999999999999999999876543 33333433321 2233332 3779999999988
Q ss_pred ccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC-C------ccCHHHhhCCccc-eEEEecC
Q 013506 129 CPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV-D------AIDPALRRSGRFD-AEVEVTV 193 (441)
Q Consensus 129 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~-~------~l~~~l~~~~r~~-~~i~~~~ 193 (441)
+...+..+...+...... ++.+|+++... . .+++.+.. ++. ..+.+|+
T Consensus 82 ----------~~~~Q~~L~~~l~~~~~~-----~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 82 ----------SPEAQRRLLDLLKRQERS-----NVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp -----------HHHHHHHHHHHHHCTTT-----TSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred ----------CHHHHHHHHHHHHhcCCC-----CeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 556778888888764311 24555555432 2 34555554 443 3455554
No 381
>PRK06526 transposase; Provisional
Probab=98.68 E-value=8.3e-08 Score=84.02 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=59.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCc-hHHHHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGE-SEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~-~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
+.+++|+||||||||++|.+++..+ |..+......++....... ....+...+... ..+.+|+|||++.....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4589999999999999999998765 6666666666665432110 111222233322 34569999999987521
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
.....++-.++...- .. ..+|++||.
T Consensus 175 --------~~~~~~L~~li~~r~---~~-~s~IitSn~ 200 (254)
T PRK06526 175 --------PEAANLFFQLVSSRY---ER-ASLIVTSNK 200 (254)
T ss_pred --------HHHHHHHHHHHHHHH---hc-CCEEEEcCC
Confidence 222334444444332 22 347777775
No 382
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.68 E-value=5.7e-08 Score=94.84 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++.+++.+
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 345688999999999999999999999875
No 383
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.66 E-value=2.4e-07 Score=90.68 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+|||||++.+++.+
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999999999875
No 384
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.66 E-value=1.4e-07 Score=82.14 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=44.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
....+++|+||+|||||++|++++... +..++.++..+.... +. ......+|+|||++.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcC
Confidence 345679999999999999999999875 557777777664321 11 12345699999999863
No 385
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.66 E-value=1.3e-07 Score=85.88 Aligned_cols=86 Identities=24% Similarity=0.359 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc---hHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE---SEKALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
..+++|+||+|||||+|+.+++..+ +..+++++..++....... ........+... ...++|+|||+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l------~~~DLLIIDDlG 256 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL------INCDLLIIDDLG 256 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh------ccCCEEEEeccC
Confidence 3789999999999999999999886 5567777765543321100 000001111111 235799999986
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 127 ALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
.... .......++..++.
T Consensus 257 ~e~~--------t~~~~~~Lf~iin~ 274 (329)
T PRK06835 257 TEKI--------TEFSKSELFNLINK 274 (329)
T ss_pred CCCC--------CHHHHHHHHHHHHH
Confidence 5421 22334555665554
No 386
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.66 E-value=2.3e-07 Score=90.79 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+|||||++.+++.+
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999999999875
No 387
>PRK09183 transposase/IS protein; Provisional
Probab=98.65 E-value=5.1e-08 Score=85.93 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=44.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
..+.+++|+||||||||+++.+++... +..+.+++..++....... ....+...+.... ..+++++|||+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-----~~~dlLiiDdlg 174 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-----MAPRLLIIDEIG 174 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-----cCCCEEEEcccc
Confidence 456889999999999999999997654 4456666554433211000 0001222232211 246899999997
Q ss_pred cc
Q 013506 127 AL 128 (441)
Q Consensus 127 ~l 128 (441)
..
T Consensus 175 ~~ 176 (259)
T PRK09183 175 YL 176 (259)
T ss_pred cC
Confidence 64
No 388
>PRK12377 putative replication protein; Provisional
Probab=98.64 E-value=9.4e-08 Score=82.98 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=61.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCch--HHHHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES--EALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~--~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
.+++|+||||||||+||.++|..+ +..++.+...++........ ......+++.. ....+|+|||+.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-- 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-- 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC--
Confidence 579999999999999999999887 56777888877766432110 01122334333 3456999999976531
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
+.+...++..++ +.-.....=+|++||+
T Consensus 178 -------s~~~~~~l~~ii---~~R~~~~~ptiitSNl 205 (248)
T PRK12377 178 -------TKNEQVVLNQII---DRRTASMRSVGMLTNL 205 (248)
T ss_pred -------CHHHHHHHHHHH---HHHHhcCCCEEEEcCC
Confidence 122334444444 4333333446777875
No 389
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.63 E-value=7.7e-08 Score=91.27 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=49.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+++|+||+|+|||+|+++++..+ +..++.++..++...+.......-...|.... ....+|+|||++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFS 215 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhc
Confidence 468999999999999999999876 67888888876655433222111112233332 345699999999875
No 390
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.63 E-value=3.7e-07 Score=89.81 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+..+..+.|+||+|+|||||++.+++..
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 45678999999999999999999999974
No 391
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.63 E-value=4.5e-07 Score=79.46 Aligned_cols=178 Identities=27% Similarity=0.360 Sum_probs=90.5
Q ss_pred cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEccCccc-cc-----
Q 013506 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL---TVISPHSVH-KA----- 92 (441)
Q Consensus 22 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~---~~v~~~~~~-~~----- 92 (441)
+|.++..+.|.+++.. .+...++|+||.|+|||++++.+...+...- ++++..... ..
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 6788888888886644 2457899999999999999999999874321 111111000 00
Q ss_pred -----------------------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccc-cCCCCCchhhHHH
Q 013506 93 -----------------------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALC-PRRDHRREQDVRI 142 (441)
Q Consensus 93 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~-~~~~~~~~~~~~~ 142 (441)
........+..++...... +...+++|||++.+. ... .....
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~iiviDe~~~~~~~~~-----~~~~~ 140 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK---GKKVIIVIDEFQYLAIASE-----EDKDF 140 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC---HCCEEEEEETGGGGGBCTT-----TTHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc---CCcEEEEEecHHHHhhccc-----chHHH
Confidence 0001112223333332221 234899999999986 211 12355
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---c---cCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC---
Q 013506 143 ASQLFTLMDSNKPSKTSVPHVVVVASTNRVD---A---IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD--- 213 (441)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~---~---l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~--- 213 (441)
...+...++..... .++.+|.+..... . -...+.. |+.. +.+++.+.++..+++....... ..
T Consensus 141 ~~~l~~~~~~~~~~----~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~ 212 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ----QNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKEL-IKLPF 212 (234)
T ss_dssp HHHHHHHHHH--------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHhhcccc----CCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHh-hcccC
Confidence 66666666652211 1233333332211 1 1112322 6665 9999999999999999876665 22
Q ss_pred CcccHHHHHHHCCCC
Q 013506 214 ANVDLEAIATSCNGY 228 (441)
Q Consensus 214 ~~~~~~~l~~~~~g~ 228 (441)
.+..++.+...+.|.
T Consensus 213 ~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 213 SDEDIEEIYSLTGGN 227 (234)
T ss_dssp -HHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHhCCC
Confidence 344466667666664
No 392
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.63 E-value=1.3e-06 Score=86.00 Aligned_cols=51 Identities=25% Similarity=0.402 Sum_probs=42.8
Q ss_pred cccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 14 KWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 14 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
+...+++++|++++++.|..++.. +++++|+||||||||++++.++..++.
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 345668999999999999887643 347999999999999999999987753
No 393
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.62 E-value=3.7e-07 Score=81.87 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=48.3
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-ceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-SFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
+.++++..+-++|.+||||||+.+++.+.... .-+...+.++- +.+.+.++-+ ...-.|+|=|-.-++-|
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~----~~~~~~mrpl-----R~~mQvVFQDPygSLsP 378 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDID----GLSRKEMRPL-----RRRMQVVFQDPYGSLSP 378 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccc----ccChhhhhhh-----hhhceEEEeCCCCCCCc
Confidence 34566778899999999999999999988743 34455554432 2333433332 23345999998888877
Q ss_pred c
Q 013506 398 K 398 (441)
Q Consensus 398 ~ 398 (441)
+
T Consensus 379 R 379 (534)
T COG4172 379 R 379 (534)
T ss_pred c
Confidence 5
No 394
>PRK06921 hypothetical protein; Provisional
Probab=98.62 E-value=2.6e-07 Score=81.66 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
...+++|+||+|+|||+|+.++++.+ +..+++++..++.... ..... .+...... ..+.++|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l----~~~~~-~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL----KDDFD-LLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH----HHHHH-HHHHHHHH--hcCCCEEEEecccc
Confidence 35789999999999999999999876 3455666554332211 11110 01111111 12467999999943
No 395
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=3.5e-07 Score=89.76 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+|||||++.+++.+
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 45678899999999999999999998865
No 396
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.61 E-value=3.2e-07 Score=88.67 Aligned_cols=195 Identities=18% Similarity=0.235 Sum_probs=110.0
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV 94 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~ 94 (441)
+..++|.....+.+.+.+... .....+++++|++||||+++|+.+.... +.+++.++|..+.....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 345666666655555544221 1245789999999999999999997654 45789999877532110
Q ss_pred cchHHHHHHHHHHH-----------HhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCC
Q 013506 95 GESEKALREAFSQA-----------SSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKT 158 (441)
Q Consensus 95 ~~~~~~~~~~~~~~-----------~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~ 158 (441)
-..+|... ........++.|||||++.| +...+..|+..++.... ...
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l----------~~~~q~~l~~~l~~~~~~~~~~~~~ 270 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL----------PLNLQAKLLRFLQERVIERLGGREE 270 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC----------CHHHHHHHHHHHhhCeEEeCCCCce
Confidence 01112110 00011234679999999988 44677788888765321 111
Q ss_pred CCCeEEEEEEcCCC-------CccCHHHhhCCccceEEEecCCCHHHHHH----HHHHHhcc----CCCC----CcccHH
Q 013506 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFDAEVEVTVPTAEERFE----ILKLYTKK----VPLD----ANVDLE 219 (441)
Q Consensus 159 ~~~~~~vi~~~~~~-------~~l~~~l~~~~r~~~~i~~~~p~~~~~~~----il~~~~~~----~~~~----~~~~~~ 219 (441)
...++.+|++++.. ..+.+.+.. |+. .+.+..|...+|.+ ++..++.. .... ....++
T Consensus 271 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (445)
T TIGR02915 271 IPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALR 347 (445)
T ss_pred eeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 12357888887764 234455544 443 34444454444432 33333322 1211 112245
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHH
Q 013506 220 AIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 220 ~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+.......+.++++++++.+..
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHH
Confidence 55555555677888888887764
No 397
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=1.5e-07 Score=85.59 Aligned_cols=103 Identities=15% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCce-------------------------EEechhhh----------------
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASF-------------------------FSLSGAEL---------------- 360 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~-------------------------~~i~~~~~---------------- 360 (441)
+.+..+||+||+|+||+++|+.+|..+.+.- ..+.....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 3345688999999999999999999885521 11111000
Q ss_pred --hhh----c-cCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe
Q 013506 361 --YSM----Y-VGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV 429 (441)
Q Consensus 361 --~~~----~-~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 429 (441)
.+. + -.-..+.++.+.+.+. .+...|++||++|++. ...-|.||+.|+..+....
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEPp~~t~ 164 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEEPPPGTV 164 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcCCCcCcE
Confidence 000 0 0012345666666553 3455699999999985 3678999999998666666
Q ss_pred EEEEeeeee
Q 013506 430 IIYPISFIF 438 (441)
Q Consensus 430 v~~~~~~~~ 438 (441)
+|+++++.-
T Consensus 165 fiL~t~~~~ 173 (342)
T PRK06964 165 FLLVSARID 173 (342)
T ss_pred EEEEECChh
Confidence 666666543
No 398
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.60 E-value=2e-07 Score=88.63 Aligned_cols=172 Identities=19% Similarity=0.209 Sum_probs=91.7
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcC-CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc----cc
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLG-LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA----HV 94 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~----~~ 94 (441)
.|.|+|++|+-|--.+-- .....+++.| ...--+|||||.||||||.+.+++.+...... ++++.....- ++
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkGsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKGSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCccchhcceeeE
Confidence 466777777665533311 0112222222 22336899999999999999999998875443 3333211100 00
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC-------CCCCeEEEEE
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-------TSVPHVVVVA 167 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~vi~ 167 (441)
.. ....+++..+..+.. ....++++|||||.|-. ....-|.+.|++..... .-..+.-|+|
T Consensus 507 tr-d~dtkqlVLesGALV-LSD~GiCCIDEFDKM~d----------StrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 507 TK-DPDTRQLVLESGALV-LSDNGICCIDEFDKMSD----------STRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred Ee-cCccceeeeecCcEE-EcCCceEEchhhhhhhH----------HHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 00 001111111111111 23467999999998821 22233344443321110 1122568889
Q ss_pred EcCCCC-------------ccCHHHhhCCccceEEE-ecCCCHHHHHHHHHHHhc
Q 013506 168 STNRVD-------------AIDPALRRSGRFDAEVE-VTVPTAEERFEILKLYTK 208 (441)
Q Consensus 168 ~~~~~~-------------~l~~~l~~~~r~~~~i~-~~~p~~~~~~~il~~~~~ 208 (441)
++|+.. .++|.+++ ||+.++- +..+++..=..+..+...
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hivs 627 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVA 627 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHH
Confidence 998753 57899999 9996654 566666644555554443
No 399
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.60 E-value=2.9e-07 Score=79.76 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccch---HHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGES---EKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.+++|+|+||||||+++.+++..+ +..+++++..++........ ......+++.. .+.++|+|||+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig~ 173 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL------SNVDLLVIDEIGV 173 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh------ccCCEEEEeCCCC
Confidence 589999999999999999999887 55666666555432211100 00111122221 2478999999976
Q ss_pred c
Q 013506 128 L 128 (441)
Q Consensus 128 l 128 (441)
.
T Consensus 174 ~ 174 (244)
T PRK07952 174 Q 174 (244)
T ss_pred C
Confidence 4
No 400
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.60 E-value=6.4e-08 Score=87.73 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=38.2
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
..+..+.|++.+++.+.-.... ...+|+||.|+|||||||+|++++..+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3577888988888876643211 123689999999999999999999998
No 401
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=1.2e-07 Score=77.55 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=55.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh-----ccCch-------HHHHHHHHHHHHhcCCeEEE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM-----YVGES-------EALLRNTFQRARLAAPSIIF 388 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~-----~~g~~-------~~~~~~~~~~a~~~~~~vl~ 388 (441)
+.+++++|++||||+.+|+++-... ..+++.++++.+... ..|.. ...-.-+|..|..+ +||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 3679999999999999999998866 468999999775332 11110 00112456655444 999
Q ss_pred EecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 389 iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
||||+.+.+ .+-..|++.|+.
T Consensus 99 Ld~I~~L~~--------------~~Q~~Ll~~l~~ 119 (168)
T PF00158_consen 99 LDEIEDLPP--------------ELQAKLLRVLEE 119 (168)
T ss_dssp EETGGGS-H--------------HHHHHHHHHHHH
T ss_pred ecchhhhHH--------------HHHHHHHHHHhh
Confidence 999999964 456677777763
No 402
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.59 E-value=6.4e-06 Score=76.91 Aligned_cols=179 Identities=15% Similarity=0.215 Sum_probs=96.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC-------c
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH-------S 88 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~-------~ 88 (441)
..++++.=..+-+.+++.|+.. +. .... -...+-+||+||+||||||.++.++.+++..+.+-+.. .
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~-~~--~~~~---~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~ 152 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ-VA--EFTP---KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPEN 152 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH-HH--Hhcc---CCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccc
Confidence 5566776666777777777751 11 0111 11335689999999999999999999999877664411 1
Q ss_pred cccccccch------HHHHHHHHHHHHh--------hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC
Q 013506 89 VHKAHVGES------EKALREAFSQASS--------HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (441)
Q Consensus 89 ~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (441)
+-....+.. -..+......... ......+.+|+|||+=..... . ..+..+..+..+-...
T Consensus 153 ~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~-----d-~~~~f~evL~~y~s~g 226 (634)
T KOG1970|consen 153 LHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR-----D-DSETFREVLRLYVSIG 226 (634)
T ss_pred ccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh-----h-hHHHHHHHHHHHHhcC
Confidence 111111110 1111111111111 111234568999997433211 1 3344555555443322
Q ss_pred CCCCCCCeEEEEEEcCCCCccCH------HHhhCCccceEEEecCCCHHHHHHHHHHHhccCC
Q 013506 155 PSKTSVPHVVVVASTNRVDAIDP------ALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP 211 (441)
Q Consensus 155 ~~~~~~~~~~vi~~~~~~~~l~~------~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~ 211 (441)
..|-+++|+-+...+..++ .+.-..|.. .|.|.+-...-.++.+..++....
T Consensus 227 ----~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 227 ----RCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred ----CCcEEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhc
Confidence 3443444444444443332 222222443 789999999998888887766544
No 403
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.59 E-value=1.1e-06 Score=85.58 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV 94 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~ 94 (441)
+.+++|.....+.+.+.+.. -.....+++++|++|||||++|+++.... +.+++.++|..+....
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 34566665555555444322 11345789999999999999999998765 4588999987753211
Q ss_pred cchHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 013506 95 GESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 158 (441)
.-..+|.... .......++.|||||++.| +...+..|+..++..... ..
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l----------~~~~q~~L~~~l~~~~~~~~~~~~~ 269 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM----------PLDVQTRLLRVLADGQFYRVGGYAP 269 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC----------CHHHHHHHHHHHhcCcEEeCCCCCe
Confidence 1111221110 0011223568999999987 446677888877653211 11
Q ss_pred CCCeEEEEEEcCCCC-------ccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhcc----CCCC----CcccHHH
Q 013506 159 SVPHVVVVASTNRVD-------AIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKK----VPLD----ANVDLEA 220 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~-------~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~~----~~~~----~~~~~~~ 220 (441)
...++.+|++++..- .+.+.+.. |+. ..+.+|+... ++...++..++.. .... ....+..
T Consensus 270 ~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 270 VKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 123568888876532 34455555 553 3445555422 2333344444332 2111 1122555
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHH
Q 013506 221 IATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 221 l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+.......+-++++++++.+...
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 55555666788888888877643
No 404
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=6.3e-07 Score=79.05 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------EEEEccCccccccccchHHHHHHHHHHHHhhhhcC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------LTVISPHSVHKAHVGESEKALREAFSQASSHALSG 115 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (441)
-++.+||+||+|+||+++|..++..+.+. +..+....- .. .-....++.+.+........+
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~--~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GR--LHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CC--cCcHHHHHHHHHHHhhCccCC
Confidence 45789999999999999999999877431 111211100 00 012344566655555555556
Q ss_pred CCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCC
Q 013506 116 KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVP 194 (441)
Q Consensus 116 ~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p 194 (441)
...|++||++|.| .....+.|++.++... +++++|..++.++.+.|.+++ |+. .+.|+++
T Consensus 95 ~~kv~ii~~ad~m----------t~~AaNaLLK~LEEPp------~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 95 PYKIYIIHEADRM----------TLDAISAFLKVLEDPP------QHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred CceEEEEechhhc----------CHHHHHHHHHHhhcCC------CCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 6789999999988 5578899999998843 367888888999999999998 886 6777765
No 405
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2.4e-07 Score=83.56 Aligned_cols=94 Identities=13% Similarity=0.220 Sum_probs=62.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCc------------------------eEEechhhhhhhccCchHHHHHHHHHHH--
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGAELYSMYVGESEALLRNTFQRA-- 379 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~------------------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a-- 379 (441)
.+||.||.|+||+++|+.+|..+-+. ++.+...+ ++.+ ..+.+|++.+.+
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~~~~ 101 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEKVSQ 101 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHHHhh
Confidence 56899999999999999999988442 12221110 0001 244556555544
Q ss_pred --HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 380 --RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 380 --~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
..+...|++||++|++- ....|.||+.|+..+.....|+++++.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred ccccCCceEEEEechhhhC--------------HHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 34556799999999984 467899999999866655555555443
No 406
>PRK06921 hypothetical protein; Provisional
Probab=98.58 E-value=2.7e-07 Score=81.61 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=45.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADV 394 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~ 394 (441)
..+++|+|++|+|||+|+.++|..+ +..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4579999999999999999999876 45677777766655321111 1222233332 3456999999955
No 407
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.58 E-value=5.5e-07 Score=89.07 Aligned_cols=100 Identities=22% Similarity=0.273 Sum_probs=61.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc----------CCceEEechhhhhhhc----------------cC-chHHHHHHHHHH
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGAELYSMY----------------VG-ESEALLRNTFQR 378 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~~~~~~~~~----------------~g-~~~~~~~~~~~~ 378 (441)
.++++|+||||||++++.+...+ ...++.+++..+...+ .| .+.+.+..+|..
T Consensus 783 vLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~ 862 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQ 862 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhh
Confidence 35699999999999999997765 2456788875432221 01 123456667766
Q ss_pred HHh--cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 379 ARL--AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 379 a~~--~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
... ....||+|||||.+... .+.++=.|..+.. ..+...++|..||-
T Consensus 863 L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~-~s~SKLiLIGISNd 911 (1164)
T PTZ00112 863 NKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT-KINSKLVLIAISNT 911 (1164)
T ss_pred hhcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh-ccCCeEEEEEecCc
Confidence 522 33469999999999742 1345555555543 23444455555553
No 408
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.58 E-value=4.2e-07 Score=88.76 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++.+++.+
T Consensus 19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678899999999999999999999865
No 409
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=3.8e-07 Score=89.39 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=66.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEE-echhh-----
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS-LSGAE----- 359 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~-i~~~~----- 359 (441)
...++++.++++..+.+..++.... .+..++..++|+|||||||||+++++|..++..+.+ .+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4467788888877777777665321 122344458999999999999999999999876655 22111
Q ss_pred -h----------hhhccCchHHHHHHHHHHHHh----------cCCeEEEEeccccccc
Q 013506 360 -L----------YSMYVGESEALLRNTFQRARL----------AAPSIIFFDEADVVGA 397 (441)
Q Consensus 360 -~----------~~~~~g~~~~~~~~~~~~a~~----------~~~~vl~iDE~d~~~~ 397 (441)
. +..+ ....+.++.++..+.. ....||||||++.++.
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~ 209 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY 209 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch
Confidence 0 0111 1223455666666541 3566999999998773
No 410
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.56 E-value=1.4e-07 Score=85.67 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=41.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
...+.+++|++++|..+...... +..++++|.|++|||||++||+++..+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45688999999999988765432 2335899999999999999999988873
No 411
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.56 E-value=5.3e-07 Score=88.34 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.9
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+.++..+.|+||+|+|||||++.+++.+.
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788999999999999999999998753
No 412
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.56 E-value=8.4e-07 Score=87.85 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+|||||++.+++.+
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46788999999999999999999999876
No 413
>PRK05642 DNA replication initiation factor; Validated
Probab=98.56 E-value=1.8e-07 Score=81.42 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=58.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGG 401 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~ 401 (441)
.+++|+||+|||||.|+++++..+ +..++.++..++...+ ..+.+... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC---
Confidence 568999999999999999998754 5678888887765421 12333322 2249999999987532
Q ss_pred CCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 402 SSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 402 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
... . ..|...++.....++.++++|+.
T Consensus 113 -----~~~-~---~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 113 -----ADW-E---EALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred -----hHH-H---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 111 1 23444444445556677777763
No 414
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.55 E-value=2e-07 Score=81.76 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhcc-----CchHHHHHHHHHHHHhcCCeEEEEecccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYV-----GESEALLRNTFQRARLAAPSIIFFDEADV 394 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~-----g~~~~~~~~~~~~a~~~~~~vl~iDE~d~ 394 (441)
.+.+++|+||||+|||.||-++|..+ |..+..+..++++...- |..+..+.+. . ....+|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccC
Confidence 45689999999999999999999877 67888888888876522 1222222221 2 3445999999987
Q ss_pred cc
Q 013506 395 VG 396 (441)
Q Consensus 395 ~~ 396 (441)
.-
T Consensus 179 ~~ 180 (254)
T COG1484 179 EP 180 (254)
T ss_pred cc
Confidence 63
No 415
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.55 E-value=5e-07 Score=78.70 Aligned_cols=62 Identities=11% Similarity=0.065 Sum_probs=40.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC---CceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+++|+||+|||||+++++++..+. ..+..+...+... ....+.+.+. ...+|+|||++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-----~~~~~~~~~~-----~~dlliiDdi~~~~ 110 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-----FVPEVLEGME-----QLSLVCIDNIECIA 110 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-----hhHHHHHHhh-----hCCEEEEeChhhhc
Confidence 4799999999999999999988653 4455555544221 1112222222 12599999999885
No 416
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.54 E-value=1.5e-07 Score=77.33 Aligned_cols=28 Identities=25% Similarity=0.518 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE 76 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~ 76 (441)
.+..+.-+.++||+||||||++|++...
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567899999999999999999999754
No 417
>PRK06851 hypothetical protein; Provisional
Probab=98.54 E-value=1.7e-06 Score=79.12 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+-++|.|+|||||||+++.++..+.
T Consensus 30 ~~~~il~G~pGtGKStl~~~i~~~~~ 55 (367)
T PRK06851 30 NRIFILKGGPGTGKSTLMKKIGEEFL 55 (367)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999988773
No 418
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=3.3e-07 Score=80.36 Aligned_cols=72 Identities=28% Similarity=0.397 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHH-HHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEK-ALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.+.+++|+||||+|||+|+.+++.++ +..+..++..++....-..... .....+... -.+.++|+|||+-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-----l~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-----LKKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-----hhcCCEEEEecccC
Confidence 56899999999999999999998876 4566666665544321111110 011111110 12367999999865
Q ss_pred c
Q 013506 128 L 128 (441)
Q Consensus 128 l 128 (441)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 419
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.9e-07 Score=84.01 Aligned_cols=97 Identities=13% Similarity=0.273 Sum_probs=63.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCc------------------------eEEechh---hhhhhccCchHHHHHHHHH
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEAS------------------------FFSLSGA---ELYSMYVGESEALLRNTFQ 377 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~------------------------~~~i~~~---~~~~~~~g~~~~~~~~~~~ 377 (441)
..+||.||+|+||+++|..+|..+-+. ++.+... ..++ +.+-.+..+.+..
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~--idqiR~l~~~~~~ 102 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG--VDAVREVTEKLYE 102 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC--HHHHHHHHHHHhh
Confidence 346899999999999999999988431 2222111 0011 2222333333444
Q ss_pred HHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 378 RARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 378 ~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
.+..+...|++||++|++- ..+-|.|||.|+..+.....|+++++.
T Consensus 103 ~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLT--------------DAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred ccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 4445666799999999984 467899999999866655555555544
No 420
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.54 E-value=5.2e-07 Score=88.30 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=26.4
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|+||+|+|||||++.+++.+
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345688899999999999999999999865
No 421
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=2.2e-07 Score=89.83 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=51.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
.++|+|++|+|||.|+++++..+ +..++.++..++...+...........|.+-. ....+|+|||++.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLED 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccC
Confidence 48999999999999999999876 56788999988876655433222222333322 2356999999999864
No 422
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.53 E-value=3.8e-08 Score=81.44 Aligned_cols=71 Identities=27% Similarity=0.492 Sum_probs=42.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc-hHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE-SEKALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
..+.+++|+||+|||||++|.+++.++ +..+.+++..++....... ........++... +.++|+|||+-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~------~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK------RVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH------TSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc------cccEecccccc
Confidence 356899999999999999999998765 5667777766543221110 0001112222222 26799999985
Q ss_pred c
Q 013506 127 A 127 (441)
Q Consensus 127 ~ 127 (441)
.
T Consensus 119 ~ 119 (178)
T PF01695_consen 119 Y 119 (178)
T ss_dssp S
T ss_pred e
Confidence 3
No 423
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.52 E-value=3.1e-07 Score=72.52 Aligned_cols=37 Identities=32% Similarity=0.582 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEccCc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC--------GAHLTVISPHS 88 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l--------~~~~~~v~~~~ 88 (441)
.+..++++||+|+|||++++.+++.+ ..+++.+++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 35679999999999999999999887 55666665543
No 424
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=4.4e-06 Score=74.75 Aligned_cols=129 Identities=10% Similarity=0.176 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-------------cEEEEccCccccccccchHHHHHHHHHHHHhhhhc-CCCe
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGA-------------HLTVISPHSVHKAHVGESEKALREAFSQASSHALS-GKPS 118 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 118 (441)
.+..||+|+.|.||+++++.++..+.+ .+..++.. .. ......++.+.+........ +...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~--~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DK--DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CC--cCCHHHHHHHHHHhccCCcccCCce
Confidence 467889999999999999999988722 11222200 01 11223455555544333322 4678
Q ss_pred EEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHH
Q 013506 119 VVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEE 198 (441)
Q Consensus 119 il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 198 (441)
|++||+++.+ .......|+..++.... ++++|..++.+..+-+.+++ |+. .+.|.+++.++
T Consensus 93 vvII~~~e~m----------~~~a~NaLLK~LEEPp~------~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~~ 153 (299)
T PRK07132 93 ILIIKNIEKT----------SNSLLNALLKTIEEPPK------DTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQK 153 (299)
T ss_pred EEEEeccccc----------CHHHHHHHHHHhhCCCC------CeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHHH
Confidence 9999999877 44677889999987432 46666666677888888888 885 79999999999
Q ss_pred HHHHHHH
Q 013506 199 RFEILKL 205 (441)
Q Consensus 199 ~~~il~~ 205 (441)
..+.+..
T Consensus 154 l~~~l~~ 160 (299)
T PRK07132 154 ILAKLLS 160 (299)
T ss_pred HHHHHHH
Confidence 8877664
No 425
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.51 E-value=1.2e-07 Score=78.43 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=47.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCch-HHHHHHHHHHHHhcCCeEEEEeccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVV 395 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDE~d~~ 395 (441)
.+.+++|+||+|||||.+|.+++..+ +..+..++.++++...-... .....+.++... ...+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 35689999999999999999998765 78888999988876532111 112233444432 3459999999754
No 426
>PF05729 NACHT: NACHT domain
Probab=98.51 E-value=2.4e-06 Score=70.42 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=72.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--------c-EEEEccCcccccccc-chHHHHHHHHHH--------HHhhhhcCC
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGA--------H-LTVISPHSVHKAHVG-ESEKALREAFSQ--------ASSHALSGK 116 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~--------~-~~~v~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~~ 116 (441)
.++|+|++|+|||++++.++..+.. . ++.+........... .....+...+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5899999999999999999876621 1 223333322221110 111111111100 001111244
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc--cCHHHhhCCccceEEEecCC
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA--IDPALRRSGRFDAEVEVTVP 194 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~--l~~~l~~~~r~~~~i~~~~p 194 (441)
..+++||.+|.+...... .........+..++.... .+++.++.++++... +...+.. . ..+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~--~~~~~~~~~l~~l~~~~~-----~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QERQRLLDLLSQLLPQAL-----PPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh--hHHHHHHHHHHHHhhhcc-----CCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 678999999988643221 111122333333443311 113445555544222 2222221 1 46899999
Q ss_pred CHHHHHHHHHHHhc
Q 013506 195 TAEERFEILKLYTK 208 (441)
Q Consensus 195 ~~~~~~~il~~~~~ 208 (441)
+.++..++++.++.
T Consensus 151 ~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 151 SEEDIKQYLRKYFS 164 (166)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999987765
No 427
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.50 E-value=4.1e-07 Score=81.91 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=63.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCch-HHHHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
..+++|+||+|||||.|+.++|..+ |.++..+..++++....... ...+.+.++.. ....+|+|||+..-..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~~-- 231 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQM-- 231 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCccc--
Confidence 4689999999999999999999988 67777777777655432111 11223344443 3455999999976431
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
+.-..+.++..+|..- -.+..-+|++||+
T Consensus 232 ------s~~~~~~ll~~Il~~R---~~~~~~ti~TSNl 260 (306)
T PRK08939 232 ------SSWVRDEVLGVILQYR---MQEELPTFFTSNF 260 (306)
T ss_pred ------cHHHHHHHHHHHHHHH---HHCCCeEEEECCC
Confidence 1111223455554321 1245668888886
No 428
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.49 E-value=3.2e-07 Score=78.84 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=61.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHH-HHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
.++++||+|+|||.|.++++..+ +..++.++..++...+...... .+..+.... ....+|+||+++.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK- 112 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-
Confidence 58999999999999999998765 5678889888887655432221 122222222 34559999999998631
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+....|...++.....++-+|++|.
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 12234444444444455555666654
No 429
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.48 E-value=7.3e-07 Score=84.22 Aligned_cols=175 Identities=17% Similarity=0.190 Sum_probs=99.5
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHH--HhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQA--QKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
+..|-|.|.+|.-|.-.+- .-.... ....+..--||+++|.||+|||-++++.++-++..++ +++......-+.
T Consensus 344 ~PsIyGhe~VK~GilL~Lf---GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLF---GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHh---CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccce
Confidence 3456677777766654331 111111 1222333468999999999999999999988766544 333222111000
Q ss_pred ch---HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCC-------CCCeEEE
Q 013506 96 ES---EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT-------SVPHVVV 165 (441)
Q Consensus 96 ~~---~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~v 165 (441)
.. .....+..-++.+ ......+|+.|||||.| +..-...+...|++...+.. -..+..|
T Consensus 420 aaVvkD~esgdf~iEAGA-LmLADnGICCIDEFDKM----------d~~dqvAihEAMEQQtISIaKAGv~aTLnARtSI 488 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGA-LMLADNGICCIDEFDKM----------DVKDQVAIHEAMEQQTISIAKAGVVATLNARTSI 488 (764)
T ss_pred EEEEecCCCCceeeecCc-EEEccCceEEechhccc----------ChHhHHHHHHHHHhheehheecceEEeecchhhh
Confidence 00 0000000011111 11234679999999988 22335666777766432211 1124567
Q ss_pred EEEcCCCC-------------ccCHHHhhCCccceE-EEecCCCHHHHHHHHHHHhcc
Q 013506 166 VASTNRVD-------------AIDPALRRSGRFDAE-VEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 166 i~~~~~~~-------------~l~~~l~~~~r~~~~-i~~~~p~~~~~~~il~~~~~~ 209 (441)
++++|+.. .+++++.+ ||+.. +-+..+++..-..|-++.+..
T Consensus 489 lAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 489 LAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 88888864 56788999 99854 457888887777777766654
No 430
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.48 E-value=2.8e-06 Score=70.91 Aligned_cols=121 Identities=22% Similarity=0.313 Sum_probs=84.2
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS 362 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~ 362 (441)
...+.++.|.+..++.+.+.....+. -.|..|+||.|.-||||++++|++-..+ +..+++++..++..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~---------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE---------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc---------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 45677889999999888765543211 2355689999999999999999998877 57789998888755
Q ss_pred hccCchHHHHHHHHHHHHhcC-CeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC---CCCCCeEEEEeeee
Q 013506 363 MYVGESEALLRNTFQRARLAA-PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG---LEQAKVIIYPISFI 437 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~-~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~---~~~~~~v~~~~~~~ 437 (441)
+-.++...+..+ +-|||+|+.-- +.++.....|-..||| -++.++++..+||-
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSF-------------EEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCC-------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 444555554433 44999997531 2233456777777887 23466777777773
No 431
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.47 E-value=4.9e-07 Score=82.04 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=61.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccC---chHHHHHHHHHHHHhcCCeEEEEecccccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVG---ESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g---~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~ 398 (441)
.+++|+||+|||||+||.++|..+ +..++.++..++...... +........++.. ....+|+|||+.....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~- 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI- 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC-
Confidence 679999999999999999999987 678888888887664321 0111111223332 2345999999987642
Q ss_pred cCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 399 r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
..+.. +.|...++.-...+.=+|++||+
T Consensus 261 --------t~~~~---~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 261 --------TEFSK---SELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred --------CHHHH---HHHHHHHHHHHHCCCCEEEECCC
Confidence 22223 33333333323334457888875
No 432
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.47 E-value=2.4e-07 Score=84.26 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.3
Q ss_pred cccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+..+.|++.++..+.-.+-. +..+|+++.|+||+||||++++++..+
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 56788998888876544321 225689999999999999999999887
No 433
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.3e-06 Score=78.73 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=63.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc-----------------------eEEechhhhhhhccCchHHHHHHHHHHH-
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS-----------------------FFSLSGAELYSMYVGESEALLRNTFQRA- 379 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~-----------------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a- 379 (441)
+..+||+||.|+||+++|+.+|..+-+. ++.+.... -++.+ ..+.++.+.+.+
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHHh
Confidence 3357999999999999999999987432 22222110 00001 234556555544
Q ss_pred ---HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 380 ---RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 380 ---~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
..+...|++||++|++. ...-|.|||.|+..+.+...|+++++.
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred hCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 33456799999999984 367899999999866665555555554
No 434
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.46 E-value=2e-06 Score=85.15 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+|||||++.+++..
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45778899999999999999999999876
No 435
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.46 E-value=4.4e-07 Score=72.86 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=26.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..++++||+|+||||+.+.+..+.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 356788999999999999999999998775
No 436
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=7.5e-06 Score=72.58 Aligned_cols=142 Identities=15% Similarity=0.262 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 013506 24 NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------------- 80 (441)
Q Consensus 24 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----------------------- 80 (441)
+..+++.+...+... .-++.+||+|| +||+++|+.++..+...
T Consensus 7 q~~~~~~L~~~~~~~------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HP 72 (290)
T PRK07276 7 QPKVFQRFQTILEQD------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFS 72 (290)
T ss_pred HHHHHHHHHHHHHcC------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 455666666665431 34578999996 68999999999876321
Q ss_pred -EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC
Q 013506 81 -LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS 159 (441)
Q Consensus 81 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 159 (441)
++.+... ...-....++++..........+...|++||++|.| .....+.|++.++...
T Consensus 73 D~~~i~p~-----~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m----------~~~AaNaLLKtLEEPp----- 132 (290)
T PRK07276 73 DVTVIEPQ-----GQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKM----------HVNAANSLLKVIEEPQ----- 132 (290)
T ss_pred CeeeecCC-----CCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhc----------CHHHHHHHHHHhcCCC-----
Confidence 1111110 001123456666666555555566789999999988 4467889999998743
Q ss_pred CCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHH
Q 013506 160 VPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILK 204 (441)
Q Consensus 160 ~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~ 204 (441)
+++++|.+++.++.+-|-++| |+. .+.|+. +.++..+++.
T Consensus 133 -~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 133 -SEIYIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -CCeEEEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 357888888889999999999 886 788866 5666555554
No 437
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=7.1e-06 Score=70.80 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=82.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------EEEEccCccccccccchHHHHHHHHHHH
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAH----------------------LTVISPHSVHKAHVGESEKALREAFSQA 108 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~----------------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 108 (441)
.+++.+||+||+|+||..+|..+|..+-.. +..+.... ..-....++++.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~~I~id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----NPIKKEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----ccCCHHHHHHHHHHH
Confidence 357889999999999999999998876321 11111110 011223344444433
Q ss_pred Hhhhh-cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccce
Q 013506 109 SSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA 187 (441)
Q Consensus 109 ~~~~~-~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~ 187 (441)
..... .+...|++||++|.| .......|+..++.- .+++++|.+++.++.+.|-+++ |+.
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m----------~~~AaNaLLK~LEEP------p~~t~fiLit~~~~~lLpTI~S--RCq- 140 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKL----------NKQSANSLLKLIEEP------PKNTYGIFTTRNENNILNTILS--RCV- 140 (261)
T ss_pred ccCchhcCCCEEEEeccHhhh----------CHHHHHHHHHhhcCC------CCCeEEEEEECChHhCchHhhh--hee-
Confidence 32221 234679999999988 557889999999873 3368888889999999999999 885
Q ss_pred EEEecCC
Q 013506 188 EVEVTVP 194 (441)
Q Consensus 188 ~i~~~~p 194 (441)
.+.++.+
T Consensus 141 ~~~~~~~ 147 (261)
T PRK05818 141 QYVVLSK 147 (261)
T ss_pred eeecCCh
Confidence 5777776
No 438
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.4e-06 Score=78.60 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=64.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceE----Eech---------hhhhh----h-ccC------chHHHHHHHHHHHHh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFF----SLSG---------AELYS----M-YVG------ESEALLRNTFQRARL 381 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~----~i~~---------~~~~~----~-~~g------~~~~~~~~~~~~a~~ 381 (441)
.+||+||+|+||+++|..+|..+-+.-- .+.. +|+.- . ..| -..+.++++.+.+..
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~ 107 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLAL 107 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhh
Confidence 4899999999999999999987743210 0000 11110 0 001 124556666665533
Q ss_pred ----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 382 ----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 382 ----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
+...|++||++|++. ....|.|||.|+..+....+|+++++.
T Consensus 108 ~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 108 TPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 345699999999984 467899999999877666666666544
No 439
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=8.8e-07 Score=80.55 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=63.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCc-------------------------eEEechhhh---hhhc-cCchHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEAS-------------------------FFSLSGAEL---YSMY-VGESEALLRN 374 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~-------------------------~~~i~~~~~---~~~~-~g~~~~~~~~ 374 (441)
+..+||+||+|+|||++|+.+|+.+.+. ++.+....- -++. ..-..+.+|.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 3458899999999999999999987431 233322100 0000 0012456677
Q ss_pred HHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 375 TFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 375 ~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+.+.+.. +...|+++|+++.+- ....+.||+.|+.......+|+++.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 7666643 445699999999884 35678999999987654444444433
No 440
>PRK08727 hypothetical protein; Validated
Probab=98.44 E-value=7.4e-07 Score=77.54 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=43.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
.++|+||+|||||+++++++..+ +..+..++..++.. .+...++.. ....+|+|||++.+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAG 107 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccC
Confidence 48999999999999999997765 45555555544322 233344433 3445999999998863
No 441
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.43 E-value=2.4e-06 Score=73.68 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=81.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEE--EccCcccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTV--ISPHSVHK 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~--v~~~~~~~ 91 (441)
..+.|+--+++.+...+.....++. -+.|--+=|+|++||||+.+++.+|+.+-. +++. +....+-
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP- 154 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP- 154 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC-
Confidence 3588988889888888865443321 123345678999999999999999988732 2211 1111111
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC-CCCCeEEEEEEcC
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK-TSVPHVVVVASTN 170 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~vi~~~~ 170 (441)
.....+..-.++..+.......++.++.++||+|.|. ...++.+...++.+.... ..-.+.++|.-+|
T Consensus 155 -~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp----------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 155 -HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP----------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC----------HhHHHHHhhhhccccccccccccceEEEEEcC
Confidence 1111122222333334444445667899999999984 356777777777543222 2334567777666
Q ss_pred CCC
Q 013506 171 RVD 173 (441)
Q Consensus 171 ~~~ 173 (441)
.-.
T Consensus 224 ~gg 226 (344)
T KOG2170|consen 224 AGG 226 (344)
T ss_pred Ccc
Confidence 644
No 442
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=8.7e-07 Score=84.48 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=50.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHH---HHHHHHHHHHhcCCeEEEEecccccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEA---LLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~---~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+++|+|++|+|||+|+++++..+ +..++.++..++...+...... .+....+.. ....+|+|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 458999999999999999999854 4678888888877665433222 232332222 345699999999885
No 443
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.42 E-value=6.7e-08 Score=88.46 Aligned_cols=176 Identities=20% Similarity=0.202 Sum_probs=85.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchH
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESE 98 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~ 98 (441)
..|.|.+.+|..|--.+........ .........-|+||+|.||+|||.+.+.++...+.. +++++............
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASV 101 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEE
T ss_pred CcCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCcccee
Confidence 4689998888776532211110000 000012234589999999999999999887665443 34443322111000000
Q ss_pred ---HHHHH-HHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC-------CCeEEEEE
Q 013506 99 ---KALRE-AFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS-------VPHVVVVA 167 (441)
Q Consensus 99 ---~~~~~-~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~vi~ 167 (441)
....+ .++ +.. ......+|++|||+|.+- ......+...|+........ ..+..|++
T Consensus 102 ~~d~~~~~~~le-aGa-lvlad~GiccIDe~dk~~----------~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 102 SRDPVTGEWVLE-AGA-LVLADGGICCIDEFDKMK----------EDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCCGGTSSECEE-E-H-HHHCTTSEEEECTTTT------------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred ccccccceeEEe-CCc-hhcccCceeeeccccccc----------chHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 00000 000 000 011236799999999872 24467778888774332211 23578899
Q ss_pred EcCCCC-------------ccCHHHhhCCccceEEEe-cCCCHHHHHHHHHHHhccC
Q 013506 168 STNRVD-------------AIDPALRRSGRFDAEVEV-TVPTAEERFEILKLYTKKV 210 (441)
Q Consensus 168 ~~~~~~-------------~l~~~l~~~~r~~~~i~~-~~p~~~~~~~il~~~~~~~ 210 (441)
++|+.. .+++.+.+ ||+.++.+ ..++.+.-..+..+.+...
T Consensus 170 a~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 170 AANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 998865 46678888 99977654 5666555555666555543
No 444
>PRK04132 replication factor C small subunit; Provisional
Probab=98.42 E-value=5.6e-07 Score=90.67 Aligned_cols=94 Identities=23% Similarity=0.331 Sum_probs=67.6
Q ss_pred CCceEEEEC--CCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHHHHHHHHHHHHh------cCCeEEEE
Q 013506 323 PVRGALLHG--PPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARL------AAPSIIFF 389 (441)
Q Consensus 323 ~~~~~ll~G--p~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~------~~~~vl~i 389 (441)
|+-|.+..| |++.||||+|+++|+.+ +.+++++++++..+ +. .++++.+.+.. .+..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--id----~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--IN----VIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--HH----HHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 455677789 99999999999999987 55799999998644 22 44444443321 13469999
Q ss_pred ecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 390 DE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
||+|.+. ....+.|++.|+..+.....|+++.+
T Consensus 637 DEaD~Lt--------------~~AQnALLk~lEep~~~~~FILi~N~ 669 (846)
T PRK04132 637 DEADALT--------------QDAQQALRRTMEMFSSNVRFILSCNY 669 (846)
T ss_pred ECcccCC--------------HHHHHHHHHHhhCCCCCeEEEEEeCC
Confidence 9999984 24679999999986655554444443
No 445
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.41 E-value=4.9e-07 Score=90.17 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=36.4
Q ss_pred cccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
|..+.|++.++..+.-.... +..+++||.|++|||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~l 49 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALL 49 (633)
T ss_pred cchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhC
Confidence 56788888888766543321 123579999999999999999999998
No 446
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.41 E-value=5.7e-07 Score=86.29 Aligned_cols=46 Identities=35% Similarity=0.463 Sum_probs=34.2
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++.|...+++.+.-. ...+.+++|+||||||||++++.++..+
T Consensus 190 d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhccc
Confidence 466677776665544332 2345689999999999999999999866
No 447
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.41 E-value=1.4e-05 Score=86.12 Aligned_cols=180 Identities=18% Similarity=0.206 Sum_probs=96.8
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEccCc----
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL---TVISPHS---- 88 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~---~~v~~~~---- 88 (441)
..+++++|.+...+.+...+.. .....+-+.++|++|+||||+|+++++.+...+ +.++...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~ 249 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS 249 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc
Confidence 4568899999999999887743 223567899999999999999999988764332 1221100
Q ss_pred ---cccccccc-------hHHHHHHHHH---------HHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 89 ---VHKAHVGE-------SEKALREAFS---------QASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 89 ---~~~~~~~~-------~~~~~~~~~~---------~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
........ ....+..++. ......+..++.+|++||++.. .....+...
T Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~------------~~l~~L~~~ 317 (1153)
T PLN03210 250 MEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ------------DVLDALAGQ 317 (1153)
T ss_pred hhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH------------HHHHHHHhh
Confidence 00000000 0000111110 0112223456789999998632 223333322
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc---ccHHHHHHHCC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN---VDLEAIATSCN 226 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~---~~~~~l~~~~~ 226 (441)
.+.. .. +-.||.||+.. .+.+....+.++.++.++.++-.+++..++-......+ .-...++..+.
T Consensus 318 ~~~~-----~~-GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 318 TQWF-----GS-GSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred CccC-----CC-CcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 2211 11 22445555543 22221134567899999999998888876543322211 11344566666
Q ss_pred CCC
Q 013506 227 GYV 229 (441)
Q Consensus 227 g~~ 229 (441)
|.+
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 653
No 448
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.40 E-value=1.9e-06 Score=83.78 Aligned_cols=174 Identities=18% Similarity=0.235 Sum_probs=100.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHH-----------HhhhhcCCC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQA-----------SSHALSGKP 117 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 117 (441)
...++++.|++||||+++++++.... ..+++.++|..+..... -..+|... ........+
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 34679999999999999999997764 45789999877532111 01111100 001112236
Q ss_pred eEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEcCCCC-------ccCHHHhhCCcc
Q 013506 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD-------AIDPALRRSGRF 185 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~ 185 (441)
+.|||||++.| +...+..|+..++..... .....++.+|++++..- .+.+.+.. |+
T Consensus 230 gtl~l~ei~~l----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl 297 (463)
T TIGR01818 230 GTLFLDEIGDM----------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RL 297 (463)
T ss_pred CeEEEEchhhC----------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--Hh
Confidence 78999999987 345677777777653211 11122567788776532 34445544 44
Q ss_pred c-eEEEecCCC--HHHHHHHHHHHhccC----CCC----CcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 186 D-AEVEVTVPT--AEERFEILKLYTKKV----PLD----ANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 186 ~-~~i~~~~p~--~~~~~~il~~~~~~~----~~~----~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
. ..+.+|+.. .++...++..++... ... ....+..+......-+-++++++++.++..
T Consensus 298 ~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 298 NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3 356677665 455555555544332 111 111244445544445678888888777653
No 449
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.40 E-value=7.7e-06 Score=73.02 Aligned_cols=164 Identities=20% Similarity=0.253 Sum_probs=98.4
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------- 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~------- 91 (441)
.++.+.|.+.+.|...+... ....|.++.|+|.+|||||.+++.+.+.++.+.+.+++.+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~----------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNN----------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEK 75 (438)
T ss_pred cCccchHHHHHHHHHHhCCC----------CcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHH
Confidence 56788899999988876321 1135678899999999999999999999988888777654321
Q ss_pred --------ccccchH-------HHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC
Q 013506 92 --------AHVGESE-------KALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (441)
Q Consensus 92 --------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (441)
...+... ......+.+........+...|++|.+|.+- +.+...++.++++.+-....
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr-------D~~a~ll~~l~~L~el~~~~ 148 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR-------DMDAILLQCLFRLYELLNEP 148 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh-------ccchHHHHHHHHHHHHhCCC
Confidence 1111111 1122233332222222346789999999874 22335566666665543322
Q ss_pred CCCCCeEEEEEEcCCCCccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHH
Q 013506 157 KTSVPHVVVVASTNRVDAIDPALRRSGRFD-AEVEVTVPTAEERFEILKLY 206 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~ 206 (441)
.+.++.+....... -..+-|.+. .+++||.|+.++.++|+..-
T Consensus 149 -----~i~iils~~~~e~~--y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 149 -----TIVIILSAPSCEKQ--YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred -----ceEEEEeccccHHH--hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 34444433322111 111112222 46899999999999998753
No 450
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.40 E-value=3.4e-06 Score=66.33 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=27.8
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
++.+.++..++++||+|||||++.+.+|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 34567899999999999999999999998753
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.39 E-value=1.7e-06 Score=71.14 Aligned_cols=96 Identities=20% Similarity=0.147 Sum_probs=55.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhh----------------------hccCc--hHHHHHHHHHHH
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS----------------------MYVGE--SEALLRNTFQRA 379 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~----------------------~~~g~--~~~~~~~~~~~a 379 (441)
++++||||+|||+++..++... +.+++.++...... .+... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 34554444322211 00001 111122334555
Q ss_pred HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 380 RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 380 ~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
....+.++++||+..+.........+......+.+..|+..+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 124 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR 124 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 6677889999999998753221001122334556666666664
No 452
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.7e-06 Score=72.70 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=27.6
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+|.+.++.++.++||+|+|||||++.++...
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 4567889999999999999999999998765
No 453
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.38 E-value=2e-06 Score=83.54 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHH-----------hhhhcCCC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQAS-----------SHALSGKP 117 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 117 (441)
...++++.|++||||+++++.+.... +.+++.++|..+.... .-..+|.... .......+
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 45789999999999999999997653 4688999987753211 0111121100 01112235
Q ss_pred eEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEcCCCC-------ccCHHHhhCCcc
Q 013506 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD-------AIDPALRRSGRF 185 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~ 185 (441)
++|||||++.| +...+..|+..++..... .....++.+|++++... .+.+.+.. |+
T Consensus 239 gtl~ld~i~~l----------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l 306 (457)
T PRK11361 239 GTLLLDEIGEM----------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL 306 (457)
T ss_pred CEEEEechhhC----------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh
Confidence 79999999988 345677788877653211 11123478888887542 33444443 44
Q ss_pred ceEEEecCCCHHHHHH----HHHHHhccC----CCC-Cccc---HHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 186 DAEVEVTVPTAEERFE----ILKLYTKKV----PLD-ANVD---LEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 186 ~~~i~~~~p~~~~~~~----il~~~~~~~----~~~-~~~~---~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
. .+.+..|...+|.. +...++.+. ... ...+ ++.+.......+.++++++++.+..
T Consensus 307 ~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~ 374 (457)
T PRK11361 307 N-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVV 374 (457)
T ss_pred c-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 3 34455555444432 333332221 111 1122 4444554555677888888887664
No 454
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.6e-06 Score=71.17 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.++...-.-|.||+||||||++|++.+..
T Consensus 29 ~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 29 DIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 45566778999999999999999998764
No 455
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.37 E-value=7e-07 Score=80.45 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchH-HHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESE-KALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
.+.+++|+||+|||||+|+.++++.+ +.++..+....+....-.... ......++.. .+.++|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l------~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV------KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh------cCCCEEEEecCCC
Confidence 45789999999999999999999987 455666655443322110000 0111122221 2467999999864
No 456
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.37 E-value=1.5e-06 Score=77.86 Aligned_cols=82 Identities=35% Similarity=0.502 Sum_probs=56.0
Q ss_pred cccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CceEEechhhhhhhccC
Q 013506 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYSMYVG 366 (441)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~--~~~~~i~~~~~~~~~~g 366 (441)
...++|+.+.+++.--.++.. +-+...+..+||.||||||||++|-++|+.+| .||+.++++++|+.-+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mI--------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMI--------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHH--------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHHH--------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 456788888887765554421 11344567899999999999999999999997 78999999999997776
Q ss_pred chHHHHHHHHHHH
Q 013506 367 ESEALLRNTFQRA 379 (441)
Q Consensus 367 ~~~~~~~~~~~~a 379 (441)
.+|. +-+.|++|
T Consensus 95 KTE~-L~qa~Rra 106 (398)
T PF06068_consen 95 KTEA-LTQAFRRA 106 (398)
T ss_dssp HHHH-HHHHHHCS
T ss_pred chHH-HHHHHHHh
Confidence 6664 44455554
No 457
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.37 E-value=2.7e-06 Score=69.70 Aligned_cols=104 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--ceEEechhhh--------hhh---ccC--chHHHHHHHHHHHHhcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAEL--------YSM---YVG--ESEALLRNTFQRARLAA 383 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~~i~~~~~--------~~~---~~g--~~~~~~~~~~~~a~~~~ 383 (441)
+.+.++..+.++||+|+||||+.++++..... .-+.++..++ ... |+. ...+.-+-.+.+|...+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 45677889999999999999999999988632 1122222111 111 111 12334455777777889
Q ss_pred CeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 384 PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 384 ~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
|.++++||-...+ +....+.+..+|.++. .....|++++
T Consensus 101 p~illlDEP~~~L----------D~~~~~~l~~~l~~~~--~~~~tiii~s 139 (163)
T cd03216 101 ARLLILDEPTAAL----------TPAEVERLFKVIRRLR--AQGVAVIFIS 139 (163)
T ss_pred CCEEEEECCCcCC----------CHHHHHHHHHHHHHHH--HCCCEEEEEe
Confidence 9999999998665 2234555666666663 2233444443
No 458
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.36 E-value=2e-06 Score=72.68 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=55.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCce-------------EEechhhhhhhccC---chHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASF-------------FSLSGAELYSMYVG---ESEALLRNTFQR 378 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~-------------~~i~~~~~~~~~~g---~~~~~~~~~~~~ 378 (441)
.+..+.-++++||||+||||+.|.++... |.++ ..+...+-...-.+ .....++++++.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~ 100 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEK 100 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHh
Confidence 33445568999999999999999998533 3322 11111111110000 112456777777
Q ss_pred HHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 379 ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 379 a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
+....|.++++||.-+.. +......+...+++.+.
T Consensus 101 ~~~~~p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~ 135 (199)
T cd03283 101 AKKGEPVLFLLDEIFKGT---------NSRERQAASAAVLKFLK 135 (199)
T ss_pred ccCCCCeEEEEecccCCC---------CHHHHHHHHHHHHHHHH
Confidence 665578899999987644 11223345566677764
No 459
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.36 E-value=2.7e-06 Score=71.76 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+..+..++|+||+||||||+.+.+.+...
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 4567889999999999999999999988763
No 460
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6e-06 Score=76.25 Aligned_cols=102 Identities=26% Similarity=0.370 Sum_probs=65.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCc-----eEEechhhhhhhc---------------cCch-HHHHHHHHHHHHh
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEAS-----FFSLSGAELYSMY---------------VGES-EALLRNTFQRARL 381 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~-----~~~i~~~~~~~~~---------------~g~~-~~~~~~~~~~a~~ 381 (441)
.+.+++++|+||||||.+++.+++.+.-. ++.+++....++| .|.+ .+..+.+++....
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 34569999999999999999999988433 7888886544332 1222 2334555555433
Q ss_pred -cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 382 -AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 382 -~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...-|+++||+|.+....+ .++-.|+...+.. ...+.+|+-+|
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~-~~~v~vi~i~n 164 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN-KVKVSIIAVSN 164 (366)
T ss_pred cCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc-ceeEEEEEEec
Confidence 4556999999999985311 5666777666554 22233444444
No 461
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=4.6e-06 Score=68.46 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeeee
Q 013506 373 RNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIFQ 439 (441)
Q Consensus 373 ~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~~ 439 (441)
|....+|.+-.|.||++||--+.+ +-.+..-+.+|+.+|. .+..|+|++=|.-|
T Consensus 157 RLcIARalAv~PeVlLmDEPtSAL----------DPIsT~kIEeLi~eLk---~~yTIviVTHnmqQ 210 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSAL----------DPISTLKIEELITELK---KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHhcCCcEEEecCccccc----------CchhHHHHHHHHHHHH---hccEEEEEeCCHHH
Confidence 446677778889999999998876 2334566899999997 56678887776654
No 462
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=2.3e-06 Score=82.84 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.5
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++|+..+.++||+|+||||+|.++-+.+.
T Consensus 488 sfti~pGe~vALVGPSGsGKSTiasLL~rfY~ 519 (716)
T KOG0058|consen 488 SFTIRPGEVVALVGPSGSGKSTIASLLLRFYD 519 (716)
T ss_pred eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45678899999999999999999999998883
No 463
>PRK06620 hypothetical protein; Validated
Probab=98.35 E-value=9.2e-07 Score=75.60 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
..++|+||+|||||+++++++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56899999999999999999887764
No 464
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=2.2e-05 Score=61.52 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
..-.++++|+||+||||++.-+++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 345799999999999999999998773
No 465
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.33 E-value=5.6e-07 Score=77.59 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=27.1
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.++.+..+.+.||+|||||||.+++++.+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3467789999999999999999999998764
No 466
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.33 E-value=1.2e-06 Score=69.53 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=53.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC---ceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEA---SFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~---~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~ 400 (441)
..+++++|++||||+++|+++....+. +++.+++.+.- .++++.+ ....+||+|+|.+.+
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~--- 83 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSP--- 83 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-H---
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCH---
Confidence 456999999999999999999887753 45555554422 3455554 455999999999853
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCC-CCCCeEEEEe
Q 013506 401 GSSSTSITVGERLLSTLLTEMDGL-EQAKVIIYPI 434 (441)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~v~~~~ 434 (441)
.....|+..|+.. ..+.++|+.+
T Consensus 84 -----------~~Q~~L~~~l~~~~~~~~RlI~ss 107 (138)
T PF14532_consen 84 -----------EAQRRLLDLLKRQERSNVRLIASS 107 (138)
T ss_dssp -----------HHHHHHHHHHHHCTTTTSEEEEEE
T ss_pred -----------HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3445555555543 3344444443
No 467
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.33 E-value=4.2e-06 Score=75.23 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----------------ccCchHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----------------YVGESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~~~~~~~~a~ 380 (441)
|++++.-++++||||||||++|-.++... +..++.++..+..+. .....++.+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 67777788999999999999987765443 555655544221110 11122333433433345
Q ss_pred hcCCeEEEEecccccccccCCCC---CCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 LAAPSIIFFDEADVVGAKRGGSS---STSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r~~~~---~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...+.++++|-+..+.+....++ +...+...|+++.+|..|.+.-....|.++-+|
T Consensus 131 ~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred ccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56788999999999987432221 112223446677777777776555555555544
No 468
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2.3e-06 Score=75.56 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=64.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEE--------echhhhhhhc-cC----chHHHHHHHHHHH----HhcCCeEEE
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS--------LSGAELYSMY-VG----ESEALLRNTFQRA----RLAAPSIIF 388 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~--------i~~~~~~~~~-~g----~~~~~~~~~~~~a----~~~~~~vl~ 388 (441)
.+||+||.|+||+++|..+|..+-+.--. -.-+|++--+ .+ -..+.++.+.+.+ ..+...|++
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~i 100 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIYI 100 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceEEE
Confidence 46899999999999999999988542100 0011110000 11 1234455555544 345567999
Q ss_pred EecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 389 iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
||++|++. ..+-|.||+.|+..+.....|+++++.
T Consensus 101 i~~ad~mt--------------~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 101 IHEADRMT--------------LDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred EechhhcC--------------HHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 99999985 367899999999977666667766664
No 469
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.30 E-value=2.5e-05 Score=70.81 Aligned_cols=174 Identities=18% Similarity=0.209 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEEccCccccc-------
Q 013506 25 RAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRE--CGAH---LTVISPHSVHKA------- 92 (441)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~--l~~~---~~~v~~~~~~~~------- 92 (441)
|..+++|.+.+... ......+.|+|++|+|||++|+.++.. .... ++.++.......
T Consensus 2 e~~~~~l~~~L~~~-----------~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLDN-----------SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHTT-----------TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCC-----------CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 45566666665431 135678999999999999999999877 4332 233332221100
Q ss_pred ------c-----ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCC
Q 013506 93 ------H-----VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVP 161 (441)
Q Consensus 93 ------~-----~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 161 (441)
. ...........+ ...+..++.+|++|+++.. .....+...+.... .
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l----~~~L~~~~~LlVlDdv~~~------------~~~~~l~~~~~~~~------~ 128 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQL----RELLKDKRCLLVLDDVWDE------------EDLEELREPLPSFS------S 128 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHH----HHHHCCTSEEEEEEEE-SH------------HHH-------HCHH------S
T ss_pred cccccccccccccccccccccccc----hhhhccccceeeeeeeccc------------cccccccccccccc------c
Confidence 0 000111111111 2223455899999998743 12222222222111 1
Q ss_pred eEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC----CCCcccHHHHHHHCCCCCHHHHHHH
Q 013506 162 HVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP----LDANVDLEAIATSCNGYVGADLEAL 236 (441)
Q Consensus 162 ~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~----~~~~~~~~~l~~~~~g~~~~~i~~l 236 (441)
+..+|.||...... .... .-...+.++..+.++-.+++........ .........++..+.|. +-.+..+
T Consensus 129 ~~kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 129 GSKILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp S-EEEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccc-cccc---ccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 24556666653322 1121 1135799999999999999998765443 12233367888888764 4444333
No 470
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.30 E-value=2.1e-06 Score=75.81 Aligned_cols=82 Identities=33% Similarity=0.519 Sum_probs=60.5
Q ss_pred cccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CceEEechhhhhhhccC
Q 013506 289 WEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYSMYVG 366 (441)
Q Consensus 289 ~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~--~~~~~i~~~~~~~~~~g 366 (441)
-+.++|+.+.+++.--.++. -+-+...+.++|++||||||||.+|-.+|+.+| -||+.++++++|+--+.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~m--------ik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k 109 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKM--------IKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK 109 (450)
T ss_pred CCcccchHHHHHhhhHHHHH--------HHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence 34567777776654333321 122556678899999999999999999999997 68999999999997777
Q ss_pred chHHHHHHHHHHH
Q 013506 367 ESEALLRNTFQRA 379 (441)
Q Consensus 367 ~~~~~~~~~~~~a 379 (441)
.++.- .+.|+++
T Consensus 110 KTE~L-~qa~Rra 121 (450)
T COG1224 110 KTEAL-TQALRRA 121 (450)
T ss_pred HHHHH-HHHHHHh
Confidence 66654 4555555
No 471
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.29 E-value=1.8e-05 Score=69.50 Aligned_cols=165 Identities=17% Similarity=0.340 Sum_probs=91.4
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEccCccccc----
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR---ECGAHLTVISPHSVHKA---- 92 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~---~l~~~~~~v~~~~~~~~---- 92 (441)
.+.|..+....+.+++..-... ...+.++++||.|+|||+++..... +.+.+++.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~---------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH---------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh---------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 4677777777788777542221 3457899999999999999876543 45566655543222111
Q ss_pred -----------------cccchHHHHHHHHHHHHhhhhcCCC-eEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC
Q 013506 93 -----------------HVGESEKALREAFSQASSHALSGKP-SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (441)
Q Consensus 93 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (441)
..+.....+..++..........+. .|.++||||..++.. .+-.+.+++|-..
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~---------rQtllYnlfDisq 166 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS---------RQTLLYNLFDISQ 166 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch---------hhHHHHHHHHHHh
Confidence 1111222222233222222222223 345567898775422 2334445554432
Q ss_pred CCCCCCCeEEEEEEcCCCC---ccCHHHhhCCccceE-EEecCC-CHHHHHHHHHHHh
Q 013506 155 PSKTSVPHVVVVASTNRVD---AIDPALRRSGRFDAE-VEVTVP-TAEERFEILKLYT 207 (441)
Q Consensus 155 ~~~~~~~~~~vi~~~~~~~---~l~~~l~~~~r~~~~-i~~~~p-~~~~~~~il~~~~ 207 (441)
.. .. .+.+++.|.+.+ .+..+.++ ||.+. |+++++ ...+...+++..+
T Consensus 167 s~--r~-Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 167 SA--RA-PICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred hc--CC-CeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 22 12 355666665544 55678888 99855 555444 5667777777665
No 472
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.29 E-value=6.2e-06 Score=68.05 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=50.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCC--ceEEechhhh--hhhcc-CchHHHHHHHHHHHHhcCCeEEEEecccc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAEL--YSMYV-GESEALLRNTFQRARLAAPSIIFFDEADV 394 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~~i~~~~~--~~~~~-g~~~~~~~~~~~~a~~~~~~vl~iDE~d~ 394 (441)
.+.++..+.++||+|+||||+.++++..... --+.++..++ ..... -...+.-+-.+.++....|.++++||--.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 3456778899999999999999999998732 1233333211 01111 11133445566777778899999999987
Q ss_pred cc
Q 013506 395 VG 396 (441)
Q Consensus 395 ~~ 396 (441)
.+
T Consensus 101 ~L 102 (177)
T cd03222 101 YL 102 (177)
T ss_pred cC
Confidence 65
No 473
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.29 E-value=4.7e-06 Score=68.52 Aligned_cols=32 Identities=28% Similarity=0.635 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccC
Q 013506 56 LLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (441)
Q Consensus 56 vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~ 87 (441)
++++||||+|||+++..++... +.++++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999999998876 3456665543
No 474
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.29 E-value=5.3e-06 Score=71.93 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=47.9
Q ss_pred CCCCCceEEEECCCCCcHHHHH-HHHHHHc--CCceEEechhh----hhhh----------c---------------cC-
Q 013506 320 GISPVRGALLHGPPGCSKTTLA-KAAAHAA--EASFFSLSGAE----LYSM----------Y---------------VG- 366 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla-~~la~~~--~~~~~~i~~~~----~~~~----------~---------------~g- 366 (441)
+++++.-++++|+||||||++| +.++..+ +..++.+...+ ++.. + .+
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 5677778899999999999997 5555443 44444443221 1000 0 00
Q ss_pred -chHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 367 -ESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 367 -~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
+.+..+..+...+...++.++++||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 013344556666555678899999999875
No 475
>PHA00729 NTP-binding motif containing protein
Probab=98.27 E-value=2.3e-06 Score=72.35 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+++|+|+|||||||+|..++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 476
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.27 E-value=9.2e-06 Score=69.51 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=55.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH-----cCCce--------------EEechhhhhhhccCchHHHHHHHHHHH-HhcCC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHA-----AEASF--------------FSLSGAELYSMYVGESEALLRNTFQRA-RLAAP 384 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~-----~~~~~--------------~~i~~~~~~~~~~g~~~~~~~~~~~~a-~~~~~ 384 (441)
+.++|+||||+||||+.|.++.. .|..+ ..+...+-.......+...++++-... ....+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 56899999999999999999843 23221 111111112212233344444433332 23578
Q ss_pred eEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 385 SIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 385 ~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
.+++|||..+.. +...+..++..+++.+-........+|++|
T Consensus 110 slvllDE~~~gt---------d~~~~~~~~~ail~~l~~~~~~~~~vli~T 151 (213)
T cd03281 110 SLVLIDEFGKGT---------DTEDGAGLLIATIEHLLKRGPECPRVIVST 151 (213)
T ss_pred cEEEeccccCCC---------CHHHHHHHHHHHHHHHHhcCCCCcEEEEEc
Confidence 899999998654 112234555566666633111223455554
No 477
>PRK15115 response regulator GlrR; Provisional
Probab=98.26 E-value=2.4e-05 Score=75.61 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=97.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHH-----------hhhhcCCC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQAS-----------SHALSGKP 117 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 117 (441)
...+++++|++|||||++|+.+.... +.+++.++|..+..... -..+|.... .......+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34689999999999999999987764 46899999877532111 111221110 01112235
Q ss_pred eEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEcCCCC-------ccCHHHhhCCcc
Q 013506 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTNRVD-------AIDPALRRSGRF 185 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~vi~~~~~~~-------~l~~~l~~~~r~ 185 (441)
+.|||||++.| +...+..|+..++..... .....++.+|++++..- .+.+.+.. |+
T Consensus 230 gtl~l~~i~~l----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l 297 (444)
T PRK15115 230 GTLFLDEIGDM----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY--RL 297 (444)
T ss_pred CEEEEEccccC----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 78999999988 446677788877653211 11122578888887531 22223322 33
Q ss_pred ceEEEecCCCHHHHHH----HHHHHhccC----CCC----CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 186 DAEVEVTVPTAEERFE----ILKLYTKKV----PLD----ANVDLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 186 ~~~i~~~~p~~~~~~~----il~~~~~~~----~~~----~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
. .+.+..|...+|.+ ++..++... ... ...-++.+.......+.++++++++.++.
T Consensus 298 ~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 298 N-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred c-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 2 34555565555532 333333321 111 12225555555556677888888877664
No 478
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.26 E-value=5.1e-06 Score=76.89 Aligned_cols=103 Identities=21% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh------ccCc--------hHHHHHHHHHHHHhc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM------YVGE--------SEALLRNTFQRARLA 382 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~------~~g~--------~~~~~~~~~~~a~~~ 382 (441)
|+.++.-+++.|+||+||||++..+|... +.+++.++..+.... -++. .+.++..+++.+...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 67778888999999999999999887654 345666654332111 0110 123456677777677
Q ss_pred CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 383 APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 383 ~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.|.+|+||++..++...-.+..++....++++..|.+...
T Consensus 158 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 158 KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 8899999999988643221112222223455666666554
No 479
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.26 E-value=2.2e-06 Score=77.57 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=58.0
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-------ceEEech----hh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-------SFFSLSG----AE 359 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-------~~~~i~~----~~ 359 (441)
++.|+++....+.+++...... ....+.-++|+|||||||||+|++++..++. +++.+.. +.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g-------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQG-------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 6788888887777766542211 1123456799999999999999999999965 8888888 66
Q ss_pred hhhhccCchHHHHHHHHHHH
Q 013506 360 LYSMYVGESEALLRNTFQRA 379 (441)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~a 379 (441)
+....++-.....+..|...
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CccCCcccCCHHHHHHHHHH
Confidence 66665555555555555443
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.26 E-value=8.6e-06 Score=65.14 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=50.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc--eEEechhhhhhhccC--chHHHHHHHHHHHHhcCCeEEEEecccc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS--FFSLSGAELYSMYVG--ESEALLRNTFQRARLAAPSIIFFDEADV 394 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~--~~~i~~~~~~~~~~g--~~~~~~~~~~~~a~~~~~~vl~iDE~d~ 394 (441)
+.+.++..+.++||+|+||||++++++...... -+.++...... |+. ...+.-+-.+.+|...+|.++++||-..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~-~~~~lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIG-YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEE-EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 355677889999999999999999999987421 12222211111 111 1123334456777778889999999987
Q ss_pred cc
Q 013506 395 VG 396 (441)
Q Consensus 395 ~~ 396 (441)
-+
T Consensus 100 ~L 101 (144)
T cd03221 100 HL 101 (144)
T ss_pred CC
Confidence 65
No 481
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.26 E-value=3.7e-06 Score=68.91 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.5
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+.++..+.|.||+|+||||+++.+++...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567899999999999999999999998763
No 482
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.25 E-value=1.8e-06 Score=79.27 Aligned_cols=83 Identities=20% Similarity=0.282 Sum_probs=60.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhhhh-------------ccCchHHHHHHHHHHHHhcCCe
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPS 385 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~~~ 385 (441)
.+.++|+.|++||||+.+|+++.... ..+++.+|+..+... |.| ....-.-+|+.|..+
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG--- 175 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG--- 175 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCCC---
Confidence 35689999999999999999997544 568999999886553 222 122223466665544
Q ss_pred EEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 386 IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 386 vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.||+|||..+.+ ..-..|+..||.
T Consensus 176 tLfLDEI~~LP~--------------~~Q~kLl~~le~ 199 (403)
T COG1221 176 TLFLDEIHRLPP--------------EGQEKLLRVLEE 199 (403)
T ss_pred EEehhhhhhCCH--------------hHHHHHHHHHHc
Confidence 999999999975 345677888876
No 483
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.24 E-value=1.6e-06 Score=73.53 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=39.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEechhh--hhh-h-------ccCchHHHHHHHHHHHH--hcCCeEEEEecc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE--LYS-M-------YVGESEALLRNTFQRAR--LAAPSIIFFDEA 392 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~--~~~-~-------~~g~~~~~~~~~~~~a~--~~~~~vl~iDE~ 392 (441)
..+|++|+||+||||+|+.++.. .-++..+.+. +.+ . -...+-+.+.+.+..+. ...+.+|+||.+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 45899999999999999998631 1122222211 000 0 00111122333333222 345779999999
Q ss_pred ccccc
Q 013506 393 DVVGA 397 (441)
Q Consensus 393 d~~~~ 397 (441)
+.+..
T Consensus 91 ~~l~~ 95 (220)
T TIGR01618 91 SALQN 95 (220)
T ss_pred HHHHH
Confidence 98765
No 484
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=5.1e-06 Score=71.39 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEccCccccccccchHHHHHHHHHH-------------------
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGESEKALREAFSQ------------------- 107 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~------------------- 107 (441)
.+..+..+-|+|++||||||+++.+.+..... -+.+.+.++......+..+.+.+++..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45678999999999999999999999877532 244444433222111122223333322
Q ss_pred ----HHhhhhcCCCeEEEEccccccc
Q 013506 108 ----ASSHALSGKPSVVFIDEIDALC 129 (441)
Q Consensus 108 ----~~~~~~~~~~~il~iDe~~~l~ 129 (441)
..+.++.-+|.+++.||.-+.+
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhc
Confidence 2344455679999999976554
No 485
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=2.5e-06 Score=64.32 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=44.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCC
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTS 406 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~ 406 (441)
+.|+||||+|||++|+.||..+....-.....+++. ..... +.+. -.... .++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~---~~~~~---~~w~-gY~~q-~vvi~DD~~~~~~~-------- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT---RNPGD---KFWD-GYQGQ-PVVIIDDFGQDNDG-------- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe---CCCcc---chhh-ccCCC-cEEEEeecCccccc--------
Confidence 478999999999999999887753331111112211 11111 1222 22233 39999999876421
Q ss_pred cchhhHHHHHHHHHhcC
Q 013506 407 ITVGERLLSTLLTEMDG 423 (441)
Q Consensus 407 ~~~~~~~~~~ll~~l~~ 423 (441)
. .......+++.++.
T Consensus 65 -~-~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 65 -Y-NYSDESELIRLISS 79 (107)
T ss_pred -c-chHHHHHHHHHHhc
Confidence 0 12356777776665
No 486
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.24 E-value=6e-06 Score=78.71 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhc------cCc--------hHHHHHHHHHHHHhc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY------VGE--------SEALLRNTFQRARLA 382 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~------~g~--------~~~~~~~~~~~a~~~ 382 (441)
|+.++.-++++|+||+||||++..++... +.+++.++..+..... .|. .+.++..+++.....
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 77778888999999999999998887755 5677777654433221 111 123355666666667
Q ss_pred CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 383 APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 383 ~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.+.+++||++..++...-.+..++....++.+..|.+...
T Consensus 156 ~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 156 KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 8889999999988753211111222223455666666654
No 487
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.24 E-value=7e-06 Score=79.12 Aligned_cols=129 Identities=16% Similarity=0.209 Sum_probs=70.8
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEech-hhhh-----
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG-AELY----- 361 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~-~~~~----- 361 (441)
..+++.-+..-.+.++.+++.... +..+..-++|+||+||||||+++++|+.++..+.+... ..+.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 344444444434445555543211 22233457889999999999999999999988887542 2210
Q ss_pred -hhccCch---H------HHHHHH-HHHHHh-----------cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHH
Q 013506 362 -SMYVGES---E------ALLRNT-FQRARL-----------AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (441)
Q Consensus 362 -~~~~g~~---~------~~~~~~-~~~a~~-----------~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~ 419 (441)
..|.+.. + ...... +..++- ..+.||+++|+=-++. .+. .+.-+.|.+
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~---------~~~-~~f~~~L~~ 158 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH---------RDT-SRFREALRQ 158 (519)
T ss_pred cccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc---------hhH-HHHHHHHHH
Confidence 0011110 0 111222 222211 3467999999986653 122 455666666
Q ss_pred HhcCCCCCCeEEEEe
Q 013506 420 EMDGLEQAKVIIYPI 434 (441)
Q Consensus 420 ~l~~~~~~~~v~~~~ 434 (441)
++..-...-.|||++
T Consensus 159 ~l~~~~~~PlV~iiS 173 (519)
T PF03215_consen 159 YLRSSRCLPLVFIIS 173 (519)
T ss_pred HHHcCCCCCEEEEEe
Confidence 665422226777776
No 488
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.23 E-value=2.5e-06 Score=74.24 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=71.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc------eEEechhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS------FFSLSGAEL 360 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~------~~~i~~~~~ 360 (441)
..+.++.+.+++-..+.++... +..| |+||+||||+|||+...+.|..+..+ +.+++.++-
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~~-----------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSGM-----------PGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred chhhhHhcCCchhhHHHHhccC-----------CCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 3455666666665555555221 2222 89999999999999999999888552 344555554
Q ss_pred hhhccCchHHHHHHHHHHHH-------hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEE
Q 013506 361 YSMYVGESEALLRNTFQRAR-------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVII 431 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~-------~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~ 431 (441)
.+ ++-- ..--..|..++ +..+..+++||+|.+. ..+-++|=...+.+..+.+..
T Consensus 105 rg--id~v-r~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 105 RG--IDPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred cC--Ccch-HHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHhccceEEE
Confidence 43 2222 22234455554 3478899999999875 344556656666655555444
No 489
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.23 E-value=2.9e-06 Score=78.07 Aligned_cols=103 Identities=26% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEccCccccccccchHHHHHHH------HHHHHhhhhcCCCeEEEE
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-LTVISPHSVHKAHVGESEKALREA------FSQASSHALSGKPSVVFI 122 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~il~i 122 (441)
..++++++|+||.|+|||+|.-.+...+... ...+....+.... -+.+... +.... .....+..+|++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~v----h~~l~~~~~~~~~l~~va-~~l~~~~~lLcf 133 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDV----HSRLHQLRGQDDPLPQVA-DELAKESRLLCF 133 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHH----HHHHHHHhCCCccHHHHH-HHHHhcCCEEEE
Confidence 4578999999999999999999998887642 1222222222111 1111110 01111 111223459999
Q ss_pred ccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC
Q 013506 123 DEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (441)
Q Consensus 123 De~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~ 172 (441)
||++-- .-.+...+..|+..+-.. ++++|+|+|.+
T Consensus 134 DEF~V~-------DiaDAmil~rLf~~l~~~--------gvvlVaTSN~~ 168 (362)
T PF03969_consen 134 DEFQVT-------DIADAMILKRLFEALFKR--------GVVLVATSNRP 168 (362)
T ss_pred eeeecc-------chhHHHHHHHHHHHHHHC--------CCEEEecCCCC
Confidence 998621 111334555566555432 47899998873
No 490
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.22 E-value=1.4e-05 Score=68.05 Aligned_cols=103 Identities=13% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCCCc-eEEEECCCCCcHHHHHHHHHHHc-----CCce---------------EEechhhhhhhccCchHHHHHHHHHHH
Q 013506 321 ISPVR-GALLHGPPGCSKTTLAKAAAHAA-----EASF---------------FSLSGAELYSMYVGESEALLRNTFQRA 379 (441)
Q Consensus 321 ~~~~~-~~ll~Gp~GtGKTtla~~la~~~-----~~~~---------------~~i~~~~~~~~~~g~~~~~~~~~~~~a 379 (441)
+.++. .++|+||||+||||+.|.++... |+.+ ..+...+......+.....++++..-+
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~ 103 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL 103 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence 34443 48999999999999999988322 2111 011111122222233333334433333
Q ss_pred H-hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 380 R-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 380 ~-~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
. ..+|.++++||...... ......+...++..+.. .+..++++|
T Consensus 104 ~~~~~p~llllDEp~~glD---------~~~~~~i~~~~l~~l~~---~~~~vi~~t 148 (200)
T cd03280 104 QHADPDSLVLLDELGSGTD---------PVEGAALAIAILEELLE---RGALVIATT 148 (200)
T ss_pred HhCCCCcEEEEcCCCCCCC---------HHHHHHHHHHHHHHHHh---cCCEEEEEC
Confidence 2 35788999999997652 22234444566666642 233444444
No 491
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.9e-06 Score=84.27 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=94.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHh-c-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQK-L-GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG- 95 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~- 95 (441)
..|-|.+.+|++|--.+- .-...... - .+..--||||+|.||+|||.+.+.+++..+..++. ++.......+.
T Consensus 286 PsIyG~e~VKkAilLqLf---gGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQLF---GGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHhc---CCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccccccccCcee
Confidence 467888888888765441 11111000 0 01223589999999999999999999888665443 32211110000
Q ss_pred --chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCC-------CCeEEEE
Q 013506 96 --ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTS-------VPHVVVV 166 (441)
Q Consensus 96 --~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~~vi 166 (441)
.......+..-++.+ .-...++|++|||+|.| +......+...|++......+ ..++.++
T Consensus 362 av~rd~~tge~~LeaGA-LVlAD~Gv~cIDEfdKm----------~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvL 430 (682)
T COG1241 362 AVVRDKVTGEWVLEAGA-LVLADGGVCCIDEFDKM----------NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVL 430 (682)
T ss_pred EEEEccCCCeEEEeCCE-EEEecCCEEEEEeccCC----------ChHHHHHHHHHHHhcEeeecccceeeecchhhhhh
Confidence 000000000001111 11234679999999987 223345566666664333221 1245677
Q ss_pred EEcCCCC-------------ccCHHHhhCCccceEEE-ecCCCHHHHHHHHHHHhc
Q 013506 167 ASTNRVD-------------AIDPALRRSGRFDAEVE-VTVPTAEERFEILKLYTK 208 (441)
Q Consensus 167 ~~~~~~~-------------~l~~~l~~~~r~~~~i~-~~~p~~~~~~~il~~~~~ 208 (441)
+++|+.. .+++.+++ ||+..+- ...|+.+.-..+..+.+.
T Consensus 431 AAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 431 AAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHH
Confidence 8888865 46788999 9996543 445555444444444443
No 492
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.22 E-value=9.2e-06 Score=73.10 Aligned_cols=117 Identities=20% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----------------ccCchHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----------------YVGESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~----------------~~g~~~~~~~~~~~~a~ 380 (441)
|++++.-+.++||||||||++|-.++... +..++.++..+..+. .....++.+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 67777788999999999999998876443 556666654221111 11122333333333345
Q ss_pred hcCCeEEEEecccccccccCCCCC---CCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 LAAPSIIFFDEADVVGAKRGGSSS---TSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...+.++++|-+..+.+.-..++. ...+...|.++..|..|...-....|.++-+|
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tN 189 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFIN 189 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 567889999999999874222111 11122345566666666655444444444444
No 493
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=5e-06 Score=71.41 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 372 LRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 372 ~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
-|-++.+|....|.++++||--... |..+...+-+||+++..
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gv----------D~~~~~~i~~lL~~l~~ 187 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGV----------DVAGQKEIYDLLKELRQ 187 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccC----------CHHHHHHHHHHHHHHHH
Confidence 3557888889999999999976543 33456778888888875
No 494
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.3e-05 Score=67.95 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=26.9
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+..+..+-++||+||||||+.+.+|+..
T Consensus 24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999865
No 495
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.21 E-value=8.6e-06 Score=70.39 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCc----
Q 013506 292 IGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE---- 367 (441)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~---- 367 (441)
+-|+.-+++.+...+..-+... .-+.+--+-|.|++||||..+++++|+.+-..... |++...|+..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~---S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANP------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR---SPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCC------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc---chhHHHhhhhccCC
Confidence 3455555555555444211111 11223445688999999999999999977322111 2222222211
Q ss_pred -------h-HHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc------CCCCCCeEEEE
Q 013506 368 -------S-EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD------GLEQAKVIIYP 433 (441)
Q Consensus 368 -------~-~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~------~~~~~~~v~~~ 433 (441)
- ++--..+-..+.....++++|||+|++.+ .+++.|--+|| |+..+..++|+
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~--------------gLld~lkpfLdyyp~v~gv~frkaIFIf 220 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP--------------GLLDVLKPFLDYYPQVSGVDFRKAIFIF 220 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH--------------hHHHHHhhhhccccccccccccceEEEE
Confidence 1 11223344455555666999999999974 56666666666 45556678887
Q ss_pred eeee
Q 013506 434 ISFI 437 (441)
Q Consensus 434 ~~~~ 437 (441)
-||.
T Consensus 221 LSN~ 224 (344)
T KOG2170|consen 221 LSNA 224 (344)
T ss_pred EcCC
Confidence 7764
No 496
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.20 E-value=1.3e-05 Score=68.27 Aligned_cols=92 Identities=17% Similarity=0.100 Sum_probs=51.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-----CCc--------------eEEechhhhhhhccCchHHHHHHHHHHH-Hh
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA-----EAS--------------FFSLSGAELYSMYVGESEALLRNTFQRA-RL 381 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~--------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a-~~ 381 (441)
.++..++++||||+||||+.+.++... |.. +..+...+......+.....++++-.-+ ..
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~ 106 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLA 106 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhc
Confidence 344578999999999999999998432 211 1112222222222333333333322222 23
Q ss_pred cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 382 AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 382 ~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
..|.++++||...... ......+...++..+.
T Consensus 107 ~~~~llllDEp~~gld---------~~~~~~l~~~ll~~l~ 138 (202)
T cd03243 107 TPRSLVLIDELGRGTS---------TAEGLAIAYAVLEHLL 138 (202)
T ss_pred cCCeEEEEecCCCCCC---------HHHHHHHHHHHHHHHH
Confidence 5788999999987541 1223345566666654
No 497
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.20 E-value=2e-05 Score=68.70 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
+..+..++|+||+|+||||+++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 456789999999999999999999988754
No 498
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.19 E-value=7.4e-06 Score=74.98 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=54.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhc-----cCchH-------HHHHHHHHHHHhcCCeEEE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY-----VGESE-------ALLRNTFQRARLAAPSIIF 388 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~-----~g~~~-------~~~~~~~~~a~~~~~~vl~ 388 (441)
..++|+.|++||||+++|+++-... +.+++.+++..+.... .|... ..-...|..| ...+||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEE
Confidence 4579999999999999999987655 4689999987643210 01100 0001123433 345999
Q ss_pred EecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 389 FDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 389 iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
||||+.+.+ .+...|+..|+.
T Consensus 99 Ldei~~L~~--------------~~Q~~Ll~~l~~ 119 (329)
T TIGR02974 99 LDELATASL--------------LVQEKLLRVIEY 119 (329)
T ss_pred eCChHhCCH--------------HHHHHHHHHHHc
Confidence 999999853 456677777754
No 499
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.19 E-value=6.3e-06 Score=71.20 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+..+++.-+.++||||||||||.|.+++.+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456677789999999999999999999884
No 500
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.19 E-value=4.8e-05 Score=69.72 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
++.-+-+.||+|+||||.++.+++++.
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 456788999999999999999999874
Done!