Query 013506
Match_columns 441
No_of_seqs 302 out of 2676
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 11:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1.4E-68 4.7E-73 530.0 34.8 412 17-436 202-623 (806)
2 1ypw_A Transitional endoplasmi 100.0 4.6E-52 1.6E-56 420.7 28.0 413 16-436 201-623 (806)
3 4b4t_J 26S protease regulatory 100.0 6.4E-41 2.2E-45 305.6 29.1 248 8-274 140-391 (405)
4 4b4t_I 26S protease regulatory 100.0 3.5E-40 1.2E-44 301.0 27.0 249 8-275 174-426 (437)
5 4b4t_M 26S protease regulatory 100.0 1.1E-39 3.7E-44 302.7 26.6 253 8-279 173-429 (434)
6 4b4t_H 26S protease regulatory 100.0 4E-39 1.4E-43 297.0 28.0 247 8-273 201-451 (467)
7 4b4t_L 26S protease subunit RP 100.0 3E-39 1E-43 300.0 26.5 249 8-275 173-425 (437)
8 4b4t_K 26S protease regulatory 100.0 2.7E-38 9.1E-43 293.3 29.7 245 8-271 164-413 (428)
9 3cf2_A TER ATPase, transitiona 100.0 9.9E-36 3.4E-40 295.4 13.0 258 9-277 470-748 (806)
10 3hu3_A Transitional endoplasmi 100.0 2.5E-31 8.4E-36 253.6 24.8 272 17-296 202-483 (489)
11 4b4t_J 26S protease regulatory 100.0 2.2E-32 7.4E-37 249.5 16.6 160 277-436 135-294 (405)
12 2x8a_A Nuclear valosin-contain 100.0 5.8E-31 2E-35 233.7 25.2 257 10-277 4-269 (274)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.7E-30 5.7E-35 236.8 28.5 230 7-249 3-235 (322)
14 3cf0_A Transitional endoplasmi 100.0 2.9E-31 1E-35 240.1 22.3 257 8-275 7-284 (301)
15 1r6b_X CLPA protein; AAA+, N-t 100.0 1.4E-30 4.7E-35 265.5 27.9 369 16-437 183-607 (758)
16 3pxi_A Negative regulator of g 100.0 1.1E-30 3.9E-35 265.5 24.7 355 16-437 177-629 (758)
17 3eie_A Vacuolar protein sortin 100.0 2.9E-30 1E-34 236.0 24.9 230 7-249 9-240 (322)
18 4b4t_I 26S protease regulatory 100.0 7.4E-31 2.5E-35 239.7 16.2 156 281-436 173-328 (437)
19 2qp9_X Vacuolar protein sortin 100.0 1.5E-29 5E-34 233.7 25.1 222 17-248 49-272 (355)
20 3h4m_A Proteasome-activating n 100.0 6.6E-29 2.3E-33 223.9 27.6 242 17-274 15-260 (285)
21 4b4t_L 26S protease subunit RP 100.0 1.5E-30 5.2E-35 241.7 16.6 156 281-436 172-327 (437)
22 2ce7_A Cell division protein F 100.0 1.1E-28 3.8E-33 233.0 27.5 241 16-273 13-257 (476)
23 4b4t_M 26S protease regulatory 100.0 1.7E-30 5.8E-35 241.1 14.6 156 281-436 172-327 (434)
24 1qvr_A CLPB protein; coiled co 100.0 3E-29 1E-33 257.6 24.8 165 16-209 167-347 (854)
25 4b4t_K 26S protease regulatory 100.0 3.3E-30 1.1E-34 239.1 15.8 155 282-436 164-318 (428)
26 4b4t_H 26S protease regulatory 100.0 3.8E-30 1.3E-34 237.4 15.9 154 283-436 202-355 (467)
27 1lv7_A FTSH; alpha/beta domain 100.0 6.6E-28 2.3E-32 213.8 27.4 241 15-272 8-252 (257)
28 2zan_A Vacuolar protein sortin 100.0 1.8E-28 6.2E-33 233.0 23.0 227 10-249 128-357 (444)
29 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.1E-27 7.1E-32 211.6 21.3 238 18-272 5-249 (262)
30 2dhr_A FTSH; AAA+ protein, hex 100.0 7.3E-27 2.5E-31 221.9 24.4 242 16-274 28-273 (499)
31 3d8b_A Fidgetin-like protein 1 100.0 1.7E-26 6E-31 213.7 25.7 251 17-276 82-338 (357)
32 1ixz_A ATP-dependent metallopr 100.0 4.3E-26 1.5E-30 201.7 25.3 236 16-268 13-252 (254)
33 3b9p_A CG5977-PA, isoform A; A 99.9 6.2E-26 2.1E-30 205.7 25.9 251 17-275 19-275 (297)
34 3vfd_A Spastin; ATPase, microt 99.9 6.8E-26 2.3E-30 212.7 25.8 250 17-275 113-368 (389)
35 1iy2_A ATP-dependent metallopr 99.9 4.7E-25 1.6E-29 197.5 26.7 237 15-268 36-276 (278)
36 4akg_A Glutathione S-transfera 99.9 3.5E-26 1.2E-30 251.4 21.0 330 52-394 1266-1678(2695)
37 2r62_A Cell division protease 99.9 8.9E-28 3E-32 214.5 2.9 244 16-275 8-256 (268)
38 1ypw_A Transitional endoplasmi 99.9 3.7E-28 1.3E-32 246.2 -0.2 228 11-249 472-703 (806)
39 3vkg_A Dynein heavy chain, cyt 99.9 8.7E-24 3E-28 233.3 18.3 323 52-394 1303-1715(3245)
40 3cf0_A Transitional endoplasmi 99.9 5.1E-24 1.7E-28 192.6 13.2 155 282-436 7-161 (301)
41 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.1E-22 3.9E-27 185.1 15.5 151 283-437 5-158 (322)
42 3eie_A Vacuolar protein sortin 99.9 3.4E-22 1.2E-26 182.6 15.5 152 282-437 10-163 (322)
43 2x8a_A Nuclear valosin-contain 99.9 2.7E-22 9.3E-27 177.9 12.9 150 284-436 4-153 (274)
44 3t15_A Ribulose bisphosphate c 99.9 2.4E-21 8.1E-26 174.1 17.5 181 49-235 32-222 (293)
45 2qp9_X Vacuolar protein sortin 99.9 7E-22 2.4E-26 182.4 13.9 152 282-437 43-196 (355)
46 2ce7_A Cell division protein F 99.9 1.3E-21 4.3E-26 184.9 14.8 152 285-437 11-163 (476)
47 3h4m_A Proteasome-activating n 99.9 1.9E-21 6.4E-26 175.1 15.3 153 284-436 11-163 (285)
48 3syl_A Protein CBBX; photosynt 99.9 1.4E-20 4.8E-25 171.5 18.9 217 16-249 27-267 (309)
49 1lv7_A FTSH; alpha/beta domain 99.9 6E-21 2E-25 168.9 14.6 151 285-436 7-157 (257)
50 2c9o_A RUVB-like 1; hexameric 99.8 2.4E-22 8.2E-27 192.1 4.8 176 17-204 35-236 (456)
51 2zan_A Vacuolar protein sortin 99.8 3.4E-21 1.2E-25 183.0 12.6 154 280-437 124-280 (444)
52 3cmw_A Protein RECA, recombina 99.8 3.8E-21 1.3E-25 203.5 12.9 154 285-438 1015-1218(1706)
53 3hu3_A Transitional endoplasmi 99.8 1.2E-20 4E-25 180.1 14.1 148 286-436 200-347 (489)
54 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.3E-20 7.7E-25 166.0 14.3 150 286-436 2-152 (262)
55 1g41_A Heat shock protein HSLU 99.8 7.8E-20 2.7E-24 170.0 14.6 170 19-204 15-189 (444)
56 3vfd_A Spastin; ATPase, microt 99.8 7.7E-20 2.6E-24 171.5 13.4 151 283-437 108-261 (389)
57 3b9p_A CG5977-PA, isoform A; A 99.8 1.4E-19 4.8E-24 163.8 14.6 149 284-436 15-167 (297)
58 3d8b_A Fidgetin-like protein 1 99.8 1.2E-19 4.2E-24 167.8 14.1 149 285-437 79-230 (357)
59 2dhr_A FTSH; AAA+ protein, hex 99.8 1.1E-19 3.8E-24 172.7 13.6 151 285-436 26-176 (499)
60 3pfi_A Holliday junction ATP-d 99.8 2.4E-17 8.1E-22 152.0 25.4 214 16-270 26-252 (338)
61 3uk6_A RUVB-like 2; hexameric 99.8 7.3E-18 2.5E-22 157.5 21.3 220 17-271 42-329 (368)
62 1ixz_A ATP-dependent metallopr 99.8 1.1E-18 3.8E-23 154.0 14.5 153 283-436 9-161 (254)
63 3t15_A Ribulose bisphosphate c 99.8 2.9E-19 9.8E-24 160.5 10.6 117 320-437 32-164 (293)
64 2r62_A Cell division protease 99.8 4.3E-20 1.5E-24 164.6 1.9 153 284-437 5-160 (268)
65 1ofh_A ATP-dependent HSL prote 99.8 1.3E-17 4.5E-22 151.9 18.0 249 19-271 15-298 (310)
66 1iy2_A ATP-dependent metallopr 99.8 1.2E-17 4.1E-22 149.3 15.0 151 285-436 35-185 (278)
67 2c9o_A RUVB-like 1; hexameric 99.7 1.8E-18 6.1E-23 165.3 8.5 143 285-436 32-197 (456)
68 3m6a_A ATP-dependent protease 99.7 1.8E-17 6.2E-22 161.0 15.6 229 19-270 81-339 (543)
69 1d2n_A N-ethylmaleimide-sensit 99.7 5.1E-17 1.7E-21 144.8 17.3 206 19-240 33-245 (272)
70 3pvs_A Replication-associated 99.7 8.4E-17 2.9E-21 152.1 18.1 208 16-271 23-243 (447)
71 3hws_A ATP-dependent CLP prote 99.7 1E-17 3.5E-22 155.7 11.2 228 20-249 16-327 (363)
72 1hqc_A RUVB; extended AAA-ATPa 99.7 2.4E-16 8.2E-21 144.5 17.0 195 15-241 8-215 (324)
73 2chg_A Replication factor C sm 99.7 2.5E-15 8.6E-20 129.9 21.0 187 16-241 14-208 (226)
74 1njg_A DNA polymerase III subu 99.7 2.2E-15 7.4E-20 132.3 20.7 188 16-241 20-232 (250)
75 4fcw_A Chaperone protein CLPB; 99.7 1.8E-16 6.2E-21 144.4 13.8 209 19-248 17-282 (311)
76 1um8_A ATP-dependent CLP prote 99.7 5.8E-16 2E-20 144.6 16.9 248 16-267 17-360 (376)
77 1jbk_A CLPB protein; beta barr 99.7 1.5E-16 5E-21 134.4 11.0 159 16-203 19-194 (195)
78 3u61_B DNA polymerase accessor 99.7 9.6E-16 3.3E-20 140.3 17.1 177 16-229 23-209 (324)
79 3te6_A Regulatory protein SIR3 99.7 1.2E-15 4E-20 136.4 15.7 167 16-210 17-214 (318)
80 3hws_A ATP-dependent CLP prote 99.7 4.5E-17 1.5E-21 151.4 6.9 133 292-424 17-157 (363)
81 1l8q_A Chromosomal replication 99.7 2.3E-15 8E-20 137.7 17.9 195 16-243 8-214 (324)
82 1iqp_A RFCS; clamp loader, ext 99.7 5.9E-15 2E-19 135.4 19.2 186 16-240 22-215 (327)
83 2z4s_A Chromosomal replication 99.6 2.5E-15 8.6E-20 142.4 16.5 217 16-272 102-332 (440)
84 3pxi_A Negative regulator of g 99.6 5.8E-15 2E-19 150.2 18.7 204 19-246 491-726 (758)
85 3cmu_A Protein RECA, recombina 99.6 1.5E-14 5E-19 155.3 22.2 119 320-438 1423-1563(2050)
86 2r44_A Uncharacterized protein 99.6 6.6E-15 2.3E-19 135.1 16.7 161 16-209 24-200 (331)
87 1in4_A RUVB, holliday junction 99.6 5.8E-14 2E-18 128.5 22.8 216 15-271 21-249 (334)
88 2v1u_A Cell division control p 99.6 2.2E-14 7.4E-19 134.9 20.1 222 19-271 19-275 (387)
89 3pxg_A Negative regulator of g 99.6 2.2E-15 7.4E-20 144.1 12.7 150 16-210 177-341 (468)
90 2chq_A Replication factor C sm 99.6 1E-14 3.6E-19 133.2 16.7 187 16-240 14-207 (319)
91 2p65_A Hypothetical protein PF 99.6 2.7E-15 9.1E-20 125.8 11.5 152 16-195 19-187 (187)
92 1sxj_D Activator 1 41 kDa subu 99.6 2E-14 6.8E-19 133.4 18.4 188 16-242 34-240 (353)
93 3bos_A Putative DNA replicatio 99.6 2E-14 6.9E-19 125.7 17.4 188 16-245 25-225 (242)
94 3syl_A Protein CBBX; photosynt 99.6 3.3E-15 1.1E-19 135.9 12.7 136 291-436 32-177 (309)
95 2qby_B CDC6 homolog 3, cell di 99.6 2E-14 6.9E-19 134.9 18.0 215 19-271 20-269 (384)
96 1jr3_A DNA polymerase III subu 99.6 3.7E-14 1.3E-18 132.6 19.5 188 16-241 13-225 (373)
97 1g8p_A Magnesium-chelatase 38 99.6 5.9E-15 2E-19 136.8 13.8 165 16-205 21-230 (350)
98 1sxj_B Activator 1 37 kDa subu 99.6 2.6E-14 9.1E-19 130.8 17.9 186 16-240 18-212 (323)
99 3cmw_A Protein RECA, recombina 99.6 3E-14 1E-18 151.4 19.6 117 320-436 1427-1565(1706)
100 1r6b_X CLPA protein; AAA+, N-t 99.6 1.5E-14 5.3E-19 147.3 16.3 204 19-246 458-717 (758)
101 1sxj_E Activator 1 40 kDa subu 99.6 3.5E-14 1.2E-18 131.7 15.9 189 16-241 11-241 (354)
102 1fnn_A CDC6P, cell division co 99.6 2.5E-13 8.4E-18 127.7 21.9 220 19-271 17-273 (389)
103 1sxj_A Activator 1 95 kDa subu 99.6 1.2E-13 4.1E-18 133.9 20.1 205 16-238 36-253 (516)
104 1sxj_C Activator 1 40 kDa subu 99.6 2.2E-13 7.5E-18 125.3 19.9 174 16-227 22-203 (340)
105 1d2n_A N-ethylmaleimide-sensit 99.6 1.9E-14 6.6E-19 128.1 12.1 113 320-436 60-175 (272)
106 4akg_A Glutathione S-transfera 99.6 1.9E-13 6.5E-18 151.6 21.9 131 53-204 645-790 (2695)
107 2bjv_A PSP operon transcriptio 99.5 3.4E-14 1.2E-18 126.0 11.9 201 17-243 4-239 (265)
108 2qby_A CDC6 homolog 1, cell di 99.5 3.6E-13 1.2E-17 126.5 19.4 221 18-271 19-271 (386)
109 1um8_A ATP-dependent CLP prote 99.5 3.8E-14 1.3E-18 132.3 12.2 134 291-424 22-178 (376)
110 1qvr_A CLPB protein; coiled co 99.5 1.1E-13 3.9E-18 142.2 15.3 210 19-247 558-822 (854)
111 1a5t_A Delta prime, HOLB; zinc 99.5 2.5E-12 8.6E-17 117.6 21.2 174 23-235 6-203 (334)
112 1g41_A Heat shock protein HSLU 99.5 1.7E-14 5.8E-19 134.3 6.0 131 290-430 15-148 (444)
113 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.9E-13 9.9E-18 129.0 14.6 161 19-207 22-196 (500)
114 1ojl_A Transcriptional regulat 99.5 2E-13 6.7E-18 123.0 12.6 194 19-242 2-233 (304)
115 2gno_A DNA polymerase III, gam 99.5 7.7E-13 2.6E-17 118.5 16.3 146 23-207 1-152 (305)
116 1ofh_A ATP-dependent HSL prote 99.5 8.7E-14 3E-18 126.5 10.1 132 291-424 16-155 (310)
117 3n70_A Transport activator; si 99.5 1.2E-13 4.3E-18 110.1 9.6 131 20-193 2-143 (145)
118 3m6a_A ATP-dependent protease 99.4 6.6E-14 2.3E-18 136.0 6.8 120 288-425 79-207 (543)
119 3co5_A Putative two-component 99.4 6.2E-14 2.1E-18 111.5 4.8 132 20-194 5-142 (143)
120 2p65_A Hypothetical protein PF 99.4 1.2E-12 4E-17 109.5 12.9 128 288-436 20-160 (187)
121 3f9v_A Minichromosome maintena 99.4 4E-14 1.4E-18 138.7 2.5 169 19-209 295-492 (595)
122 3vkg_A Dynein heavy chain, cyt 99.4 1.1E-11 3.8E-16 138.3 21.3 128 53-204 604-750 (3245)
123 1jbk_A CLPB protein; beta barr 99.4 3.6E-12 1.2E-16 107.1 13.5 99 288-399 20-131 (195)
124 3co5_A Putative two-component 99.4 6.5E-13 2.2E-17 105.6 6.0 89 324-437 27-115 (143)
125 3uk6_A RUVB-like 2; hexameric 99.4 4.3E-12 1.5E-16 118.3 12.4 127 286-436 40-226 (368)
126 3cmu_A Protein RECA, recombina 99.3 6.8E-11 2.3E-15 127.4 20.2 118 320-437 1077-1216(2050)
127 3n70_A Transport activator; si 99.3 5.4E-12 1.9E-16 100.5 8.6 89 323-436 23-114 (145)
128 3pvs_A Replication-associated 99.3 1.1E-11 3.8E-16 117.1 11.5 112 287-435 23-141 (447)
129 3pfi_A Holliday junction ATP-d 99.3 1.3E-11 4.4E-16 113.5 11.6 110 286-425 25-134 (338)
130 3k1j_A LON protease, ATP-depen 99.3 4.1E-11 1.4E-15 118.4 14.0 49 16-79 38-86 (604)
131 1sxj_A Activator 1 95 kDa subu 99.3 3E-12 1E-16 124.2 5.7 139 285-436 34-188 (516)
132 4fcw_A Chaperone protein CLPB; 99.3 1.8E-11 6.1E-16 111.2 10.5 127 291-437 18-169 (311)
133 1l8q_A Chromosomal replication 99.2 2.8E-11 9.5E-16 110.5 10.6 74 323-397 36-112 (324)
134 3te6_A Regulatory protein SIR3 99.2 3.9E-11 1.3E-15 107.2 10.6 101 322-436 43-171 (318)
135 3u61_B DNA polymerase accessor 99.2 6.2E-11 2.1E-15 108.3 11.3 118 286-436 22-144 (324)
136 1w5s_A Origin recognition comp 99.2 6.2E-10 2.1E-14 105.3 18.2 208 19-244 22-273 (412)
137 3pxg_A Negative regulator of g 99.2 4.3E-11 1.5E-15 114.4 8.2 88 287-390 177-274 (468)
138 2v1u_A Cell division control p 99.1 2.4E-10 8.3E-15 107.1 12.3 130 290-437 19-176 (387)
139 2z4s_A Chromosomal replication 99.1 1.7E-10 5.7E-15 109.3 10.9 101 324-436 130-235 (440)
140 2chg_A Replication factor C sm 99.1 2.3E-10 8E-15 98.4 10.3 116 287-436 14-140 (226)
141 1hqc_A RUVB; extended AAA-ATPa 99.1 2.3E-10 8E-15 104.5 10.0 107 288-423 10-116 (324)
142 2gno_A DNA polymerase III, gam 99.1 7.9E-10 2.7E-14 99.0 12.2 93 325-436 19-121 (305)
143 2bjv_A PSP operon transcriptio 99.1 1.4E-10 4.9E-15 102.5 7.3 122 288-437 4-150 (265)
144 2qby_A CDC6 homolog 1, cell di 99.1 1E-09 3.4E-14 102.8 13.4 128 290-436 20-171 (386)
145 3ec2_A DNA replication protein 99.1 2.5E-10 8.7E-15 94.5 8.0 63 16-88 7-77 (180)
146 1sxj_D Activator 1 41 kDa subu 99.1 1.7E-10 6E-15 106.7 7.6 120 286-434 33-170 (353)
147 3ec2_A DNA replication protein 99.1 1.7E-10 5.8E-15 95.6 6.6 103 321-437 35-142 (180)
148 1iqp_A RFCS; clamp loader, ext 99.0 5.9E-10 2E-14 101.9 10.0 120 287-436 22-148 (327)
149 1ojl_A Transcriptional regulat 99.0 3E-10 1E-14 102.1 7.8 97 323-437 24-146 (304)
150 1sxj_B Activator 1 37 kDa subu 99.0 8.1E-10 2.8E-14 100.8 10.7 116 287-436 18-145 (323)
151 2kjq_A DNAA-related protein; s 99.0 3.1E-10 1E-14 90.4 6.7 58 52-128 35-95 (149)
152 2chq_A Replication factor C sm 99.0 3.2E-10 1.1E-14 103.3 7.5 120 287-436 14-140 (319)
153 1njg_A DNA polymerase III subu 99.0 4.9E-10 1.7E-14 97.8 8.2 122 288-436 21-164 (250)
154 3nbx_X ATPase RAVA; AAA+ ATPas 99.0 2.5E-10 8.4E-15 108.8 6.6 98 324-436 41-157 (500)
155 1jr3_A DNA polymerase III subu 99.0 1E-09 3.6E-14 102.2 10.3 116 288-436 14-157 (373)
156 1sxj_C Activator 1 40 kDa subu 99.0 7.6E-10 2.6E-14 101.6 8.9 116 287-436 22-148 (340)
157 2qby_B CDC6 homolog 3, cell di 99.0 1.9E-09 6.3E-14 101.0 11.0 98 290-397 20-147 (384)
158 3bos_A Putative DNA replicatio 99.0 1.3E-09 4.3E-14 95.0 8.4 64 323-396 51-117 (242)
159 2qen_A Walker-type ATPase; unk 99.0 3.5E-08 1.2E-12 91.0 18.2 191 17-237 10-246 (350)
160 2kjq_A DNAA-related protein; s 98.9 7E-10 2.4E-14 88.3 5.6 59 323-396 35-96 (149)
161 2vhj_A Ntpase P4, P4; non- hyd 98.9 5E-10 1.7E-14 98.9 4.6 114 320-437 119-235 (331)
162 1sxj_E Activator 1 40 kDa subu 98.9 4.5E-09 1.5E-13 97.1 11.3 49 287-348 11-60 (354)
163 1g8p_A Magnesium-chelatase 38 98.9 2E-09 6.9E-14 99.3 8.9 52 286-350 20-71 (350)
164 1a5t_A Delta prime, HOLB; zinc 98.9 2.9E-09 1E-13 97.2 9.6 94 325-436 25-146 (334)
165 1fnn_A CDC6P, cell division co 98.9 1.2E-08 4.3E-13 95.5 13.7 124 290-436 17-167 (389)
166 2r44_A Uncharacterized protein 98.9 3.1E-09 1E-13 97.2 8.7 100 290-423 27-135 (331)
167 3j16_B RLI1P; ribosome recycli 98.9 6.5E-09 2.2E-13 101.6 10.1 28 50-77 100-127 (608)
168 3f8t_A Predicted ATPase involv 98.9 7.1E-09 2.4E-13 95.9 9.3 217 19-272 213-483 (506)
169 2fna_A Conserved hypothetical 98.8 1.2E-07 4.1E-12 87.6 17.4 185 18-238 12-251 (357)
170 1in4_A RUVB, holliday junction 98.8 5.3E-08 1.8E-12 88.9 13.6 93 288-396 23-115 (334)
171 1tf7_A KAIC; homohexamer, hexa 98.8 1.5E-07 5E-12 91.4 17.1 108 320-435 277-415 (525)
172 1ny5_A Transcriptional regulat 98.8 3.9E-08 1.3E-12 91.5 12.3 196 19-243 137-369 (387)
173 2w58_A DNAI, primosome compone 98.8 6.8E-09 2.3E-13 87.6 6.6 100 325-437 55-158 (202)
174 2vhj_A Ntpase P4, P4; non- hyd 98.7 2.1E-08 7.2E-13 88.6 8.3 77 49-131 119-197 (331)
175 3f9v_A Minichromosome maintena 98.7 1.9E-09 6.3E-14 105.7 1.5 114 290-423 295-417 (595)
176 2r2a_A Uncharacterized protein 98.7 2.6E-08 8.9E-13 83.0 8.1 127 55-195 7-154 (199)
177 2w58_A DNAI, primosome compone 98.7 2.9E-08 1E-12 83.7 8.6 36 54-89 55-93 (202)
178 1tue_A Replication protein E1; 98.7 9.2E-08 3.1E-12 78.5 10.6 32 50-81 55-86 (212)
179 3dzd_A Transcriptional regulat 98.7 6.6E-08 2.3E-12 89.1 10.3 194 20-242 130-359 (368)
180 2qgz_A Helicase loader, putati 98.6 2.1E-08 7.3E-13 90.1 5.0 101 324-437 152-257 (308)
181 2r2a_A Uncharacterized protein 98.6 9.8E-08 3.3E-12 79.5 6.9 101 326-436 7-131 (199)
182 2qgz_A Helicase loader, putati 98.6 9.3E-08 3.2E-12 85.9 7.2 37 53-89 152-192 (308)
183 1w5s_A Origin recognition comp 98.6 5E-07 1.7E-11 85.2 12.4 132 290-436 22-187 (412)
184 3k1j_A LON protease, ATP-depen 98.5 3.7E-07 1.3E-11 90.1 11.0 52 284-350 35-86 (604)
185 1ye8_A Protein THEP1, hypothet 98.5 1.2E-06 4E-11 71.8 11.4 25 55-79 2-26 (178)
186 3kw6_A 26S protease regulatory 98.5 6.4E-07 2.2E-11 62.2 8.3 74 192-273 1-74 (78)
187 1ye8_A Protein THEP1, hypothet 98.5 9.1E-07 3.1E-11 72.4 10.6 25 326-350 2-26 (178)
188 1tue_A Replication protein E1; 98.5 1.2E-07 4.2E-12 77.8 5.2 34 321-354 55-88 (212)
189 2krk_A 26S protease regulatory 98.5 4.5E-07 1.5E-11 63.9 7.4 76 191-274 8-83 (86)
190 3hr8_A Protein RECA; alpha and 98.4 1.3E-06 4.4E-11 79.3 9.7 115 320-434 57-193 (356)
191 1jr3_D DNA polymerase III, del 98.3 5.6E-06 1.9E-10 75.8 13.2 161 52-241 17-189 (343)
192 1u0j_A DNA replication protein 98.3 2.7E-06 9.4E-11 73.3 10.2 29 51-79 102-130 (267)
193 1svm_A Large T antigen; AAA+ f 98.3 2.6E-07 9E-12 84.7 3.3 115 48-188 164-279 (377)
194 1xp8_A RECA protein, recombina 98.2 3.9E-06 1.3E-10 76.8 9.4 117 320-436 70-208 (366)
195 2zr9_A Protein RECA, recombina 98.2 1.4E-06 4.6E-11 79.5 6.0 78 320-397 57-153 (349)
196 3vlf_B 26S protease regulatory 98.2 5E-06 1.7E-10 58.9 7.2 74 195-276 2-75 (88)
197 3ux8_A Excinuclease ABC, A sub 98.2 7.3E-06 2.5E-10 82.0 10.7 205 47-345 38-369 (670)
198 2w0m_A SSO2452; RECA, SSPF, un 98.2 1E-05 3.5E-10 69.6 10.2 29 320-348 19-47 (235)
199 2cvh_A DNA repair and recombin 98.1 9.8E-06 3.4E-10 69.0 9.8 40 49-88 16-55 (220)
200 1svm_A Large T antigen; AAA+ f 98.1 5.7E-06 1.9E-10 75.9 8.6 67 319-397 164-230 (377)
201 2ehv_A Hypothetical protein PH 98.1 6E-06 2.1E-10 71.9 8.4 26 320-345 26-51 (251)
202 2cvh_A DNA repair and recombin 98.1 4.3E-06 1.5E-10 71.2 7.0 38 320-357 16-53 (220)
203 2w0m_A SSO2452; RECA, SSPF, un 98.1 1.5E-05 5.1E-10 68.6 10.2 37 49-85 19-58 (235)
204 1ny5_A Transcriptional regulat 98.1 2.6E-06 9E-11 79.1 5.7 82 324-423 160-257 (387)
205 1n0w_A DNA repair protein RAD5 98.1 4E-06 1.4E-10 72.7 6.3 78 320-397 20-133 (243)
206 1u94_A RECA protein, recombina 98.1 4.2E-06 1.4E-10 76.3 6.6 79 320-398 59-156 (356)
207 1n0w_A DNA repair protein RAD5 98.1 9.1E-06 3.1E-10 70.4 8.5 40 49-88 20-68 (243)
208 3aji_B S6C, proteasome (prosom 98.1 7.3E-06 2.5E-10 57.5 6.2 75 195-277 2-76 (83)
209 4gp7_A Metallophosphoesterase; 98.1 4.2E-06 1.5E-10 68.1 5.4 22 321-342 6-27 (171)
210 2qen_A Walker-type ATPase; unk 98.0 7E-05 2.4E-09 68.6 14.1 51 291-358 13-63 (350)
211 2ehv_A Hypothetical protein PH 98.0 2.9E-05 9.8E-10 67.5 10.7 26 49-74 26-51 (251)
212 2b8t_A Thymidine kinase; deoxy 98.0 2.3E-05 8E-10 66.2 9.4 76 52-128 11-101 (223)
213 4a74_A DNA repair and recombin 98.0 4.8E-06 1.6E-10 71.5 5.1 29 320-348 21-49 (231)
214 1qhx_A CPT, protein (chloramph 98.0 2.2E-05 7.6E-10 64.3 8.7 34 325-358 4-37 (178)
215 1v5w_A DMC1, meiotic recombina 98.0 1.1E-05 3.8E-10 73.5 6.9 78 320-397 118-233 (343)
216 3hr8_A Protein RECA; alpha and 97.9 2.5E-05 8.7E-10 70.9 8.7 82 49-130 57-153 (356)
217 2z43_A DNA repair and recombin 97.9 6.6E-06 2.3E-10 74.5 4.9 78 320-397 103-217 (324)
218 2eyu_A Twitching motility prot 97.9 4.3E-06 1.5E-10 72.9 3.5 72 321-393 22-108 (261)
219 1vpl_A ABC transporter, ATP-bi 97.9 2.5E-05 8.4E-10 67.8 8.2 31 319-349 36-66 (256)
220 3fvq_A Fe(3+) IONS import ATP- 97.9 2.1E-05 7.2E-10 71.3 8.0 30 319-348 25-54 (359)
221 2fna_A Conserved hypothetical 97.9 0.00011 3.8E-09 67.5 12.9 33 326-358 32-64 (357)
222 1vma_A Cell division protein F 97.9 0.00011 3.7E-09 65.5 12.2 72 322-394 102-197 (306)
223 3vaa_A Shikimate kinase, SK; s 97.9 7.5E-06 2.6E-10 68.5 4.4 36 49-84 21-56 (199)
224 3tui_C Methionine import ATP-b 97.9 1.9E-05 6.4E-10 71.7 7.2 31 319-349 49-79 (366)
225 4g1u_C Hemin import ATP-bindin 97.9 1.5E-05 5.2E-10 69.6 6.5 30 319-348 32-61 (266)
226 3io5_A Recombination and repai 97.9 2.6E-05 8.9E-10 68.7 7.9 113 320-433 25-166 (333)
227 3jvv_A Twitching mobility prot 97.9 6.9E-06 2.4E-10 74.9 4.4 100 51-175 121-234 (356)
228 4a74_A DNA repair and recombin 97.9 4.2E-05 1.4E-09 65.5 9.2 29 49-77 21-49 (231)
229 3gfo_A Cobalt import ATP-bindi 97.9 1.3E-06 4.6E-11 76.6 -0.3 30 49-78 30-59 (275)
230 1pzn_A RAD51, DNA repair and r 97.9 1.5E-05 5E-10 72.9 6.5 30 319-348 126-155 (349)
231 3gfo_A Cobalt import ATP-bindi 97.9 1.8E-05 6.3E-10 69.3 6.7 30 319-348 29-58 (275)
232 3vaa_A Shikimate kinase, SK; s 97.9 8.6E-06 3E-10 68.2 4.4 37 320-356 21-57 (199)
233 1z6t_A APAF-1, apoptotic prote 97.9 0.00023 7.8E-09 70.3 15.3 47 18-75 123-169 (591)
234 4g1u_C Hemin import ATP-bindin 97.9 2.4E-06 8.3E-11 74.7 0.7 29 49-77 33-61 (266)
235 3dzd_A Transcriptional regulat 97.9 3.1E-05 1.1E-09 71.3 8.0 81 325-423 153-248 (368)
236 3rlf_A Maltose/maltodextrin im 97.9 2E-06 6.8E-11 78.6 -0.2 30 49-78 25-54 (381)
237 2orw_A Thymidine kinase; TMTK, 97.9 1.5E-05 5.2E-10 65.5 5.2 24 53-76 3-26 (184)
238 3jvv_A Twitching mobility prot 97.9 6.1E-06 2.1E-10 75.2 3.1 72 322-393 121-206 (356)
239 3dm5_A SRP54, signal recogniti 97.8 0.00013 4.4E-09 68.0 11.9 73 323-395 99-194 (443)
240 3lda_A DNA repair protein RAD5 97.8 2.2E-05 7.6E-10 72.6 6.8 78 320-397 174-287 (400)
241 3nh6_A ATP-binding cassette SU 97.8 3.2E-05 1.1E-09 68.8 7.4 32 318-349 74-105 (306)
242 1zp6_A Hypothetical protein AT 97.8 1.1E-05 3.6E-10 67.1 4.0 40 49-88 5-44 (191)
243 3rlf_A Maltose/maltodextrin im 97.8 2.6E-05 8.7E-10 71.3 6.8 31 319-349 24-54 (381)
244 3fvq_A Fe(3+) IONS import ATP- 97.8 4.4E-05 1.5E-09 69.3 8.3 30 49-78 26-55 (359)
245 2cbz_A Multidrug resistance-as 97.8 3.4E-05 1.2E-09 66.2 7.1 30 319-348 26-55 (237)
246 2eyu_A Twitching motility prot 97.8 5.6E-05 1.9E-09 65.8 8.5 28 50-77 22-49 (261)
247 2px0_A Flagellar biosynthesis 97.8 0.00022 7.4E-09 63.3 12.4 97 323-433 104-220 (296)
248 3tif_A Uncharacterized ABC tra 97.8 2.7E-05 9.2E-10 66.8 6.3 30 319-348 26-55 (235)
249 1zp6_A Hypothetical protein AT 97.8 1.4E-05 4.6E-10 66.4 4.3 40 321-360 6-45 (191)
250 1xp8_A RECA protein, recombina 97.8 5.9E-05 2E-09 69.0 8.8 82 49-130 70-166 (366)
251 1qhx_A CPT, protein (chloramph 97.8 1.8E-05 6.3E-10 64.8 5.0 34 53-86 3-36 (178)
252 2pcj_A ABC transporter, lipopr 97.8 3.1E-05 1.1E-09 65.9 6.4 30 320-349 26-55 (224)
253 3kl4_A SRP54, signal recogniti 97.8 9.6E-05 3.3E-09 68.8 10.2 73 323-395 96-191 (433)
254 2zr9_A Protein RECA, recombina 97.8 2.8E-05 9.5E-10 70.8 6.4 82 49-130 57-153 (349)
255 2dr3_A UPF0273 protein PH0284; 97.8 7.1E-05 2.4E-09 64.8 8.8 38 49-86 19-59 (247)
256 3tui_C Methionine import ATP-b 97.8 3.7E-05 1.3E-09 69.8 7.1 31 48-78 49-79 (366)
257 2p5t_B PEZT; postsegregational 97.8 8.5E-05 2.9E-09 64.6 9.1 39 322-360 30-68 (253)
258 3nh6_A ATP-binding cassette SU 97.8 4.4E-06 1.5E-10 74.3 0.7 30 49-78 76-105 (306)
259 3trf_A Shikimate kinase, SK; a 97.8 1.7E-05 5.7E-10 65.5 4.2 33 324-356 5-37 (185)
260 2ff7_A Alpha-hemolysin translo 97.8 5.2E-05 1.8E-09 65.5 7.4 30 320-349 31-60 (247)
261 2dr3_A UPF0273 protein PH0284; 97.8 0.00019 6.6E-09 62.0 11.2 28 320-347 19-46 (247)
262 2olj_A Amino acid ABC transpor 97.8 6.6E-05 2.3E-09 65.3 7.9 31 319-349 45-75 (263)
263 1z47_A CYSA, putative ABC-tran 97.8 3.7E-05 1.3E-09 69.7 6.5 30 320-349 37-66 (355)
264 3trf_A Shikimate kinase, SK; a 97.7 1.9E-05 6.7E-10 65.1 4.2 32 53-84 5-36 (185)
265 2yyz_A Sugar ABC transporter, 97.7 4.7E-05 1.6E-09 69.2 7.0 29 320-348 25-53 (359)
266 1v43_A Sugar-binding transport 97.7 6.3E-06 2.2E-10 75.4 1.1 31 48-78 32-62 (372)
267 3d31_A Sulfate/molybdate ABC t 97.7 9E-06 3.1E-10 73.7 2.1 30 49-78 22-51 (348)
268 2yyz_A Sugar ABC transporter, 97.7 5.8E-06 2E-10 75.2 0.8 30 49-78 25-54 (359)
269 2nq2_C Hypothetical ABC transp 97.7 7E-05 2.4E-09 64.9 7.6 29 320-348 27-55 (253)
270 1gvn_B Zeta; postsegregational 97.7 0.00011 3.7E-09 65.1 8.9 35 323-357 32-66 (287)
271 2nq2_C Hypothetical ABC transp 97.7 0.00011 3.8E-09 63.6 8.7 30 49-78 27-56 (253)
272 2orw_A Thymidine kinase; TMTK, 97.7 2.1E-05 7.2E-10 64.7 4.0 30 326-355 5-37 (184)
273 1z47_A CYSA, putative ABC-tran 97.7 5.2E-06 1.8E-10 75.4 0.3 30 49-78 37-66 (355)
274 2it1_A 362AA long hypothetical 97.7 6.2E-06 2.1E-10 75.1 0.8 30 49-78 25-54 (362)
275 2it1_A 362AA long hypothetical 97.7 4.9E-05 1.7E-09 69.2 6.7 30 320-349 25-54 (362)
276 1ji0_A ABC transporter; ATP bi 97.7 6.7E-05 2.3E-09 64.5 7.2 29 320-348 28-56 (240)
277 2rhm_A Putative kinase; P-loop 97.7 3.4E-05 1.2E-09 64.1 5.2 33 51-83 3-35 (193)
278 1pzn_A RAD51, DNA repair and r 97.7 0.00015 5.2E-09 66.1 9.8 41 48-88 126-175 (349)
279 3lda_A DNA repair protein RAD5 97.7 0.00017 5.8E-09 66.7 10.2 40 49-88 174-222 (400)
280 2onk_A Molybdate/tungstate ABC 97.7 4.1E-05 1.4E-09 65.7 5.7 29 320-349 21-49 (240)
281 3sfz_A APAF-1, apoptotic pepti 97.7 0.0004 1.4E-08 74.9 14.8 169 17-229 122-321 (1249)
282 1nlf_A Regulatory protein REPA 97.7 0.00011 3.6E-09 65.1 8.4 29 320-348 26-54 (279)
283 2fz4_A DNA repair protein RAD2 97.7 0.00012 4.3E-09 62.8 8.6 33 326-358 110-142 (237)
284 1y63_A LMAJ004144AAA protein; 97.7 2.7E-05 9.1E-10 64.2 4.2 34 323-356 9-43 (184)
285 3gd7_A Fusion complex of cysti 97.7 8.5E-06 2.9E-10 75.0 1.3 30 48-77 42-71 (390)
286 2rhm_A Putative kinase; P-loop 97.7 2.7E-05 9.2E-10 64.7 4.3 34 323-356 4-37 (193)
287 3io5_A Recombination and repai 97.7 8.3E-05 2.8E-09 65.5 7.4 81 49-131 25-126 (333)
288 1y63_A LMAJ004144AAA protein; 97.7 2.6E-05 8.9E-10 64.3 4.1 32 51-82 8-40 (184)
289 1nlf_A Regulatory protein REPA 97.7 0.00015 5.2E-09 64.1 9.3 29 49-77 26-54 (279)
290 1u94_A RECA protein, recombina 97.7 5.5E-05 1.9E-09 68.9 6.5 79 49-130 59-155 (356)
291 2pt7_A CAG-ALFA; ATPase, prote 97.7 2.1E-05 7E-10 71.2 3.6 73 322-394 169-251 (330)
292 2iut_A DNA translocase FTSK; n 97.7 0.00096 3.3E-08 64.0 15.0 74 118-204 345-420 (574)
293 3upu_A ATP-dependent DNA helic 97.7 8.2E-05 2.8E-09 70.9 7.7 24 54-77 46-69 (459)
294 1kag_A SKI, shikimate kinase I 97.7 3.1E-05 1.1E-09 63.0 4.2 30 325-354 5-34 (173)
295 3e1s_A Exodeoxyribonuclease V, 97.7 5.5E-05 1.9E-09 73.8 6.6 32 53-84 204-238 (574)
296 3crm_A TRNA delta(2)-isopenten 97.7 3.1E-05 1.1E-09 69.0 4.4 36 326-361 7-42 (323)
297 1gvn_B Zeta; postsegregational 97.7 6E-05 2.1E-09 66.8 6.2 39 51-89 31-69 (287)
298 3d31_A Sulfate/molybdate ABC t 97.6 6.2E-05 2.1E-09 68.2 6.3 31 319-349 21-51 (348)
299 1mv5_A LMRA, multidrug resista 97.6 0.00017 5.7E-09 62.2 8.8 30 319-348 23-52 (243)
300 2pjz_A Hypothetical protein ST 97.6 0.00027 9.1E-09 61.5 10.1 29 48-77 26-54 (263)
301 1kag_A SKI, shikimate kinase I 97.6 3.6E-05 1.2E-09 62.7 4.2 30 53-82 4-33 (173)
302 1g5t_A COB(I)alamin adenosyltr 97.6 0.0011 3.7E-08 54.2 12.8 113 53-181 28-169 (196)
303 2ixe_A Antigen peptide transpo 97.6 0.00019 6.6E-09 62.8 9.1 31 319-349 40-70 (271)
304 2ewv_A Twitching motility prot 97.6 3.5E-05 1.2E-09 71.0 4.5 75 319-393 131-219 (372)
305 3thx_B DNA mismatch repair pro 97.6 0.0002 6.7E-09 73.2 10.3 92 322-422 671-782 (918)
306 1zuh_A Shikimate kinase; alpha 97.6 3.6E-05 1.2E-09 62.4 4.1 32 325-356 8-39 (168)
307 3kb2_A SPBC2 prophage-derived 97.6 3.8E-05 1.3E-09 62.4 4.3 31 326-356 3-33 (173)
308 3iij_A Coilin-interacting nucl 97.6 3.9E-05 1.3E-09 63.0 4.3 32 52-83 10-41 (180)
309 3iij_A Coilin-interacting nucl 97.6 4.3E-05 1.5E-09 62.7 4.5 34 323-356 10-43 (180)
310 3f8t_A Predicted ATPase involv 97.6 3.1E-05 1E-09 71.9 3.9 104 292-423 215-326 (506)
311 3gd7_A Fusion complex of cysti 97.6 9.2E-05 3.2E-09 68.1 7.1 30 319-348 42-71 (390)
312 1via_A Shikimate kinase; struc 97.6 3.3E-05 1.1E-09 63.0 3.8 31 326-356 6-36 (175)
313 1v43_A Sugar-binding transport 97.6 5.7E-05 1.9E-09 69.1 5.6 31 319-349 32-62 (372)
314 3upu_A ATP-dependent DNA helic 97.6 9.2E-05 3.2E-09 70.5 7.3 23 326-348 47-69 (459)
315 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00019 6.3E-09 62.7 8.6 36 325-360 5-43 (260)
316 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00019 6.4E-09 62.7 8.6 37 53-89 4-43 (260)
317 2r6a_A DNAB helicase, replicat 97.6 0.00024 8.2E-09 67.5 10.0 39 49-87 199-241 (454)
318 2z43_A DNA repair and recombin 97.6 0.00011 3.9E-09 66.4 7.4 40 49-88 103-151 (324)
319 3e1s_A Exodeoxyribonuclease V, 97.6 5.5E-05 1.9E-09 73.8 5.6 94 324-434 204-313 (574)
320 2p5t_B PEZT; postsegregational 97.6 9.3E-05 3.2E-09 64.4 6.4 40 50-89 29-68 (253)
321 1vma_A Cell division protein F 97.6 0.00073 2.5E-08 60.1 12.2 36 51-86 102-140 (306)
322 2yhs_A FTSY, cell division pro 97.6 0.00063 2.2E-08 64.0 12.2 29 320-348 289-317 (503)
323 3kb2_A SPBC2 prophage-derived 97.6 5.2E-05 1.8E-09 61.7 4.5 30 55-84 3-32 (173)
324 2i1q_A DNA repair and recombin 97.6 4.1E-05 1.4E-09 69.3 4.2 28 320-347 94-121 (322)
325 1zuh_A Shikimate kinase; alpha 97.6 4.9E-05 1.7E-09 61.6 4.1 30 54-83 8-37 (168)
326 2iyv_A Shikimate kinase, SK; t 97.6 4.7E-05 1.6E-09 62.7 4.0 31 326-356 4-34 (184)
327 1knq_A Gluconate kinase; ALFA/ 97.6 6.3E-05 2.2E-09 61.4 4.6 33 323-355 7-39 (175)
328 1v5w_A DMC1, meiotic recombina 97.6 0.00015 5E-09 66.1 7.4 40 49-88 118-166 (343)
329 4eun_A Thermoresistant glucoki 97.5 5.8E-05 2E-09 63.1 4.4 33 322-354 27-59 (200)
330 2cdn_A Adenylate kinase; phosp 97.5 6E-05 2E-09 63.1 4.5 32 324-355 20-51 (201)
331 2a5y_B CED-4; apoptosis; HET: 97.5 0.0011 3.8E-08 64.6 14.0 44 22-75 131-174 (549)
332 2ewv_A Twitching motility prot 97.5 4.3E-05 1.5E-09 70.3 3.8 34 45-78 128-161 (372)
333 4eun_A Thermoresistant glucoki 97.5 7E-05 2.4E-09 62.6 4.8 36 51-88 27-62 (200)
334 1aky_A Adenylate kinase; ATP:A 97.5 5.8E-05 2E-09 64.2 4.3 32 324-355 4-35 (220)
335 3cm0_A Adenylate kinase; ATP-b 97.5 5.3E-05 1.8E-09 62.5 3.9 32 324-355 4-35 (186)
336 1via_A Shikimate kinase; struc 97.5 5.9E-05 2E-09 61.6 4.1 29 55-83 6-34 (175)
337 1knq_A Gluconate kinase; ALFA/ 97.5 8.1E-05 2.8E-09 60.7 4.7 31 52-82 7-37 (175)
338 2ius_A DNA translocase FTSK; n 97.5 0.0011 3.6E-08 63.2 12.9 76 116-204 296-374 (512)
339 3be4_A Adenylate kinase; malar 97.5 5E-05 1.7E-09 64.4 3.5 31 325-355 6-36 (217)
340 2b8t_A Thymidine kinase; deoxy 97.5 0.00038 1.3E-08 58.7 8.8 71 324-395 12-101 (223)
341 2dzn_B 26S protease regulatory 97.5 6E-05 2E-09 52.6 3.2 69 197-273 1-69 (82)
342 3t61_A Gluconokinase; PSI-biol 97.5 8.5E-05 2.9E-09 62.2 4.8 32 325-356 19-50 (202)
343 2ga8_A Hypothetical 39.9 kDa p 97.5 6.1E-05 2.1E-09 67.7 4.0 53 22-83 2-54 (359)
344 3cm0_A Adenylate kinase; ATP-b 97.5 7.3E-05 2.5E-09 61.6 4.3 30 53-82 4-33 (186)
345 2ze6_A Isopentenyl transferase 97.5 7E-05 2.4E-09 65.1 4.3 32 326-357 3-34 (253)
346 2c95_A Adenylate kinase 1; tra 97.5 6.8E-05 2.3E-09 62.4 4.1 32 324-355 9-40 (196)
347 1htw_A HI0065; nucleotide-bind 97.5 7.9E-05 2.7E-09 59.4 4.2 31 47-77 27-57 (158)
348 2iyv_A Shikimate kinase, SK; t 97.5 6.1E-05 2.1E-09 62.0 3.7 29 55-83 4-32 (184)
349 2pez_A Bifunctional 3'-phospho 97.5 0.0001 3.5E-09 60.4 5.0 38 323-360 4-44 (179)
350 2cdn_A Adenylate kinase; phosp 97.5 8.7E-05 3E-09 62.1 4.5 32 53-84 20-51 (201)
351 1oxx_K GLCV, glucose, ABC tran 97.5 0.00014 4.6E-09 66.2 6.0 30 319-348 26-55 (353)
352 2xau_A PRE-mRNA-splicing facto 97.5 0.00027 9.2E-09 71.6 8.8 24 324-347 109-132 (773)
353 2c95_A Adenylate kinase 1; tra 97.5 7.8E-05 2.7E-09 62.0 4.1 32 52-83 8-39 (196)
354 2vli_A Antibiotic resistance p 97.5 6.9E-05 2.4E-09 61.6 3.7 29 325-353 6-34 (183)
355 2ze6_A Isopentenyl transferase 97.5 8.7E-05 3E-09 64.5 4.5 32 55-86 3-34 (253)
356 3thx_A DNA mismatch repair pro 97.5 0.00049 1.7E-08 70.5 10.6 24 324-347 662-685 (934)
357 1tev_A UMP-CMP kinase; ploop, 97.5 7.8E-05 2.7E-09 62.0 4.0 31 325-355 4-34 (196)
358 3umf_A Adenylate kinase; rossm 97.5 0.00012 4.1E-09 61.6 5.0 33 50-82 26-58 (217)
359 1e6c_A Shikimate kinase; phosp 97.4 7.7E-05 2.6E-09 60.7 3.8 31 326-356 4-34 (173)
360 2pt7_A CAG-ALFA; ATPase, prote 97.4 2.8E-05 9.6E-10 70.3 1.2 72 51-126 169-250 (330)
361 3b5x_A Lipid A export ATP-bind 97.4 0.00055 1.9E-08 67.2 10.5 31 318-348 363-393 (582)
362 3dl0_A Adenylate kinase; phosp 97.4 8.5E-05 2.9E-09 62.9 4.1 30 326-355 2-31 (216)
363 3qf4_B Uncharacterized ABC tra 97.4 4.5E-05 1.5E-09 75.1 2.7 31 48-78 376-406 (598)
364 1aky_A Adenylate kinase; ATP:A 97.4 0.00012 4.1E-09 62.2 5.0 32 52-83 3-34 (220)
365 3umf_A Adenylate kinase; rossm 97.4 0.00011 3.7E-09 61.8 4.5 30 324-353 29-58 (217)
366 2pt5_A Shikimate kinase, SK; a 97.4 9.6E-05 3.3E-09 59.8 4.2 31 326-356 2-32 (168)
367 3lw7_A Adenylate kinase relate 97.4 8.2E-05 2.8E-09 60.7 3.7 29 326-355 3-31 (179)
368 3uie_A Adenylyl-sulfate kinase 97.4 0.00013 4.5E-09 60.9 5.0 39 322-360 23-64 (200)
369 3t61_A Gluconokinase; PSI-biol 97.4 9.9E-05 3.4E-09 61.8 4.3 31 53-83 18-48 (202)
370 3sr0_A Adenylate kinase; phosp 97.4 0.0001 3.5E-09 61.6 4.3 29 326-354 2-30 (206)
371 3llm_A ATP-dependent RNA helic 97.4 0.00061 2.1E-08 58.4 9.3 22 324-345 76-97 (235)
372 1zd8_A GTP:AMP phosphotransfer 97.4 8.9E-05 3E-09 63.4 3.9 32 324-355 7-38 (227)
373 1g29_1 MALK, maltose transport 97.4 0.00019 6.6E-09 65.7 6.3 30 320-349 25-54 (372)
374 3qf4_B Uncharacterized ABC tra 97.4 0.00034 1.2E-08 68.9 8.5 31 319-349 376-406 (598)
375 3fb4_A Adenylate kinase; psych 97.4 9.5E-05 3.2E-09 62.6 4.0 30 326-355 2-31 (216)
376 1htw_A HI0065; nucleotide-bind 97.4 0.0001 3.5E-09 58.7 3.9 30 319-348 28-57 (158)
377 1ak2_A Adenylate kinase isoenz 97.4 0.00011 3.8E-09 63.0 4.4 31 325-355 17-47 (233)
378 2pez_A Bifunctional 3'-phospho 97.4 0.00016 5.6E-09 59.1 5.3 35 52-86 4-41 (179)
379 3bh0_A DNAB-like replicative h 97.4 0.0013 4.6E-08 59.0 11.7 39 49-87 64-105 (315)
380 3qf4_A ABC transporter, ATP-bi 97.4 6.4E-05 2.2E-09 73.8 3.2 30 49-78 365-394 (587)
381 3nwj_A ATSK2; P loop, shikimat 97.4 7.6E-05 2.6E-09 64.4 3.3 31 53-83 48-78 (250)
382 3tlx_A Adenylate kinase 2; str 97.4 0.00011 3.7E-09 63.5 4.2 33 323-355 28-60 (243)
383 1kht_A Adenylate kinase; phosp 97.4 8.4E-05 2.9E-09 61.6 3.4 30 325-354 4-38 (192)
384 3lw7_A Adenylate kinase relate 97.4 8.7E-05 3E-09 60.5 3.5 28 55-83 3-30 (179)
385 1g5t_A COB(I)alamin adenosyltr 97.4 0.0011 3.6E-08 54.3 9.7 101 324-436 28-161 (196)
386 1tev_A UMP-CMP kinase; ploop, 97.4 0.00014 4.9E-09 60.3 4.8 30 53-82 3-32 (196)
387 3uie_A Adenylyl-sulfate kinase 97.4 0.00018 6E-09 60.1 5.3 27 51-77 23-49 (200)
388 2gxq_A Heat resistant RNA depe 97.4 0.00075 2.6E-08 56.5 9.3 42 383-437 144-185 (207)
389 1zd8_A GTP:AMP phosphotransfer 97.4 9.5E-05 3.3E-09 63.2 3.6 32 52-83 6-37 (227)
390 1u0j_A DNA replication protein 97.4 0.00012 4.2E-09 63.1 4.2 29 322-350 102-130 (267)
391 3dl0_A Adenylate kinase; phosp 97.4 0.00011 3.7E-09 62.3 3.9 30 55-84 2-31 (216)
392 1qf9_A UMP/CMP kinase, protein 97.4 0.00013 4.3E-09 60.5 4.2 31 325-355 7-37 (194)
393 1ex7_A Guanylate kinase; subst 97.4 0.00016 5.5E-09 59.2 4.7 28 54-81 2-29 (186)
394 1e6c_A Shikimate kinase; phosp 97.4 0.00013 4.5E-09 59.3 4.2 29 55-83 4-32 (173)
395 3fb4_A Adenylate kinase; psych 97.4 0.00012 4E-09 62.0 4.0 30 55-84 2-31 (216)
396 2r8r_A Sensor protein; KDPD, P 97.4 0.012 4E-07 49.3 16.0 34 53-86 6-42 (228)
397 3tlx_A Adenylate kinase 2; str 97.4 0.00013 4.3E-09 63.1 4.3 33 52-84 28-60 (243)
398 2bwj_A Adenylate kinase 5; pho 97.4 0.00011 3.8E-09 61.2 3.8 31 325-355 13-43 (199)
399 4a82_A Cystic fibrosis transme 97.4 0.00027 9.2E-09 69.3 7.0 31 319-349 362-392 (578)
400 2pt5_A Shikimate kinase, SK; a 97.4 0.00013 4.5E-09 59.0 4.1 29 55-83 2-30 (168)
401 3b6e_A Interferon-induced heli 97.4 0.00084 2.9E-08 56.5 9.3 23 325-347 49-71 (216)
402 2bwj_A Adenylate kinase 5; pho 97.4 0.00012 4E-09 61.1 3.9 31 53-83 12-42 (199)
403 3qf4_A ABC transporter, ATP-bi 97.4 0.00044 1.5E-08 67.8 8.5 31 319-349 364-394 (587)
404 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 60.3 4.1 26 53-78 3-28 (192)
405 4a82_A Cystic fibrosis transme 97.3 3.9E-05 1.3E-09 75.2 0.9 30 49-78 363-392 (578)
406 1zak_A Adenylate kinase; ATP:A 97.3 9.2E-05 3.2E-09 63.0 3.2 30 325-354 6-35 (222)
407 3b60_A Lipid A export ATP-bind 97.3 0.00056 1.9E-08 67.1 9.2 32 318-349 363-394 (582)
408 3ozx_A RNAse L inhibitor; ATP 97.3 0.00029 9.8E-09 68.0 6.9 28 321-348 291-318 (538)
409 2i1q_A DNA repair and recombin 97.3 0.00032 1.1E-08 63.4 6.8 28 49-76 94-121 (322)
410 3sr0_A Adenylate kinase; phosp 97.3 0.00017 5.8E-09 60.3 4.6 28 55-82 2-29 (206)
411 1cke_A CK, MSSA, protein (cyti 97.3 0.00014 4.8E-09 62.1 4.3 30 325-354 6-35 (227)
412 3tr0_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 61.0 4.1 29 50-78 4-32 (205)
413 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.9E-09 60.1 3.5 25 54-78 3-28 (181)
414 1z6g_A Guanylate kinase; struc 97.3 0.00011 3.9E-09 62.2 3.6 30 49-78 19-48 (218)
415 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.6E-09 60.3 3.3 28 326-353 4-32 (181)
416 2vli_A Antibiotic resistance p 97.3 0.00011 3.8E-09 60.3 3.4 30 53-82 5-34 (183)
417 2fz4_A DNA repair protein RAD2 97.3 0.0018 6.1E-08 55.5 11.1 33 54-86 109-141 (237)
418 1qf9_A UMP/CMP kinase, protein 97.3 0.00019 6.5E-09 59.5 4.9 31 53-83 6-36 (194)
419 1ukz_A Uridylate kinase; trans 97.3 0.00016 5.3E-09 60.6 4.3 32 325-356 16-47 (203)
420 1kgd_A CASK, peripheral plasma 97.3 0.00016 5.4E-09 59.3 4.2 27 52-78 4-30 (180)
421 2yvu_A Probable adenylyl-sulfa 97.3 0.00099 3.4E-08 54.8 9.1 37 323-359 12-51 (186)
422 2zts_A Putative uncharacterize 97.3 0.00051 1.7E-08 59.5 7.7 39 49-87 26-68 (251)
423 3b5x_A Lipid A export ATP-bind 97.3 0.00018 6.3E-09 70.6 5.2 30 48-77 364-393 (582)
424 3nwj_A ATSK2; P loop, shikimat 97.3 0.00016 5.4E-09 62.4 4.2 33 324-356 48-80 (250)
425 1ukz_A Uridylate kinase; trans 97.3 0.00015 5.2E-09 60.6 4.0 31 53-83 15-45 (203)
426 1e4v_A Adenylate kinase; trans 97.3 0.00014 4.7E-09 61.5 3.7 30 326-355 2-31 (214)
427 1w36_D RECD, exodeoxyribonucle 97.3 0.0011 3.6E-08 65.4 10.6 24 325-348 165-188 (608)
428 3ney_A 55 kDa erythrocyte memb 97.3 0.00018 6.3E-09 59.2 4.3 33 46-78 12-44 (197)
429 2bbw_A Adenylate kinase 4, AK4 97.3 0.0002 7E-09 61.9 4.8 29 53-81 27-55 (246)
430 1lvg_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 60.7 3.5 27 52-78 3-29 (198)
431 1ak2_A Adenylate kinase isoenz 97.3 0.00024 8.1E-09 60.9 5.1 31 53-83 16-46 (233)
432 3b9q_A Chloroplast SRP recepto 97.3 0.00022 7.5E-09 63.5 5.0 29 320-348 96-124 (302)
433 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.9E-09 61.0 3.6 28 50-77 3-30 (207)
434 3a8t_A Adenylate isopentenyltr 97.3 0.00032 1.1E-08 62.6 6.0 34 325-358 41-74 (339)
435 2v9p_A Replication protein E1; 97.3 0.00018 6.2E-09 63.7 4.4 32 47-78 120-151 (305)
436 3thx_B DNA mismatch repair pro 97.3 0.0014 4.7E-08 67.0 11.4 26 50-75 670-695 (918)
437 3be4_A Adenylate kinase; malar 97.3 0.00018 6.1E-09 60.9 4.2 32 53-84 5-36 (217)
438 1zak_A Adenylate kinase; ATP:A 97.3 0.00015 5.1E-09 61.7 3.7 29 53-81 5-33 (222)
439 2bbw_A Adenylate kinase 4, AK4 97.3 0.0002 6.8E-09 62.0 4.6 30 324-353 27-56 (246)
440 2q6t_A DNAB replication FORK h 97.3 0.0014 4.7E-08 62.0 10.6 39 49-87 196-238 (444)
441 3j16_B RLI1P; ribosome recycli 97.3 0.001 3.5E-08 65.1 9.7 27 322-348 101-127 (608)
442 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00011 3.8E-09 66.1 2.7 30 325-354 25-54 (359)
443 1kgd_A CASK, peripheral plasma 97.3 0.0002 6.7E-09 58.7 4.1 27 323-349 4-30 (180)
444 1wb9_A DNA mismatch repair pro 97.3 0.0014 4.8E-08 66.2 11.0 26 323-348 606-631 (800)
445 3a8t_A Adenylate isopentenyltr 97.3 0.00068 2.3E-08 60.6 7.8 34 53-86 40-73 (339)
446 1cke_A CK, MSSA, protein (cyti 97.3 0.00025 8.5E-09 60.5 4.9 30 53-82 5-34 (227)
447 4e22_A Cytidylate kinase; P-lo 97.3 0.00023 7.9E-09 61.8 4.7 31 323-353 26-56 (252)
448 1m7g_A Adenylylsulfate kinase; 97.2 0.00068 2.3E-08 57.1 7.5 39 322-360 23-65 (211)
449 2qor_A Guanylate kinase; phosp 97.2 0.00019 6.3E-09 60.2 3.9 30 49-78 8-37 (204)
450 1tf7_A KAIC; homohexamer, hexa 97.2 0.001 3.5E-08 64.4 9.6 98 320-422 35-172 (525)
451 2if2_A Dephospho-COA kinase; a 97.2 0.00017 5.8E-09 60.4 3.6 30 326-356 3-32 (204)
452 2og2_A Putative signal recogni 97.2 0.00026 8.8E-09 64.4 5.0 29 320-348 153-181 (359)
453 3crm_A TRNA delta(2)-isopenten 97.2 0.00023 7.8E-09 63.4 4.5 35 54-88 6-40 (323)
454 3b9q_A Chloroplast SRP recepto 97.2 0.0004 1.4E-08 61.8 6.1 29 49-77 96-124 (302)
455 2j41_A Guanylate kinase; GMP, 97.2 0.00017 5.7E-09 60.6 3.5 27 322-348 4-30 (207)
456 1jr3_D DNA polymerase III, del 97.2 0.0011 3.7E-08 60.5 9.1 87 325-436 19-116 (343)
457 1znw_A Guanylate kinase, GMP k 97.2 0.0002 6.8E-09 60.2 3.9 30 49-78 16-45 (207)
458 2jaq_A Deoxyguanosine kinase; 97.2 0.00022 7.4E-09 59.7 4.2 29 326-354 2-30 (205)
459 1s96_A Guanylate kinase, GMP k 97.2 0.00022 7.5E-09 60.3 4.1 30 49-78 12-41 (219)
460 3tr0_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 59.8 4.1 26 323-348 6-31 (205)
461 2xxa_A Signal recognition part 97.2 0.0023 7.8E-08 59.9 11.4 70 323-392 99-192 (433)
462 2yl4_A ATP-binding cassette SU 97.2 0.00062 2.1E-08 67.0 7.8 32 318-349 364-395 (595)
463 3exa_A TRNA delta(2)-isopenten 97.2 0.00066 2.3E-08 59.8 7.1 34 326-359 5-38 (322)
464 3ozx_A RNAse L inhibitor; ATP 97.2 0.0013 4.4E-08 63.5 9.8 26 323-348 24-49 (538)
465 3tau_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 60.0 3.9 29 51-79 6-34 (208)
466 1e4v_A Adenylate kinase; trans 97.2 0.00027 9.3E-09 59.7 4.6 30 55-84 2-31 (214)
467 2v54_A DTMP kinase, thymidylat 97.2 0.00025 8.6E-09 59.3 4.3 32 324-355 4-36 (204)
468 1jjv_A Dephospho-COA kinase; P 97.2 0.0002 6.7E-09 60.1 3.6 28 326-354 4-31 (206)
469 2xb4_A Adenylate kinase; ATP-b 97.2 0.00023 7.9E-09 60.5 4.1 30 326-355 2-31 (223)
470 3kl4_A SRP54, signal recogniti 97.2 0.0016 5.6E-08 60.6 10.1 36 52-87 96-134 (433)
471 1lvg_A Guanylate kinase, GMP k 97.2 0.00018 6.1E-09 59.9 3.3 26 323-348 3-28 (198)
472 3foz_A TRNA delta(2)-isopenten 97.2 0.00083 2.9E-08 59.1 7.6 33 326-358 12-44 (316)
473 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00065 2.2E-08 65.7 7.6 28 321-348 44-71 (538)
474 1zu4_A FTSY; GTPase, signal re 97.2 0.0041 1.4E-07 55.7 12.3 35 321-355 102-139 (320)
475 4f4c_A Multidrug resistance pr 97.2 0.00074 2.5E-08 72.6 8.7 33 318-350 438-470 (1321)
476 2v54_A DTMP kinase, thymidylat 97.2 0.00029 9.9E-09 58.9 4.5 33 52-84 3-36 (204)
477 4e22_A Cytidylate kinase; P-lo 97.2 0.00032 1.1E-08 60.9 4.8 31 52-82 26-56 (252)
478 2r6a_A DNAB helicase, replicat 97.2 0.00075 2.6E-08 64.1 7.7 29 320-348 199-227 (454)
479 1w36_D RECD, exodeoxyribonucle 97.2 0.0023 7.9E-08 63.0 11.4 25 53-77 164-188 (608)
480 3r20_A Cytidylate kinase; stru 97.2 0.00028 9.7E-09 59.9 4.2 31 324-354 9-39 (233)
481 1z6g_A Guanylate kinase; struc 97.2 0.00023 7.8E-09 60.3 3.7 29 320-348 19-47 (218)
482 2jaq_A Deoxyguanosine kinase; 97.2 0.00031 1.1E-08 58.8 4.4 28 55-82 2-29 (205)
483 1znw_A Guanylate kinase, GMP k 97.2 0.00025 8.6E-09 59.5 3.9 29 320-348 16-44 (207)
484 2pbr_A DTMP kinase, thymidylat 97.2 0.0003 1E-08 58.3 4.3 31 326-356 2-35 (195)
485 1nks_A Adenylate kinase; therm 97.2 0.00024 8.2E-09 58.8 3.7 35 326-360 3-40 (194)
486 2j37_W Signal recognition part 97.2 0.0019 6.7E-08 61.4 10.3 35 323-357 100-137 (504)
487 3e70_C DPA, signal recognition 97.2 0.0015 5.3E-08 58.6 9.1 106 322-439 127-255 (328)
488 1p9r_A General secretion pathw 97.2 0.00068 2.3E-08 63.1 7.0 28 52-79 166-193 (418)
489 2pbr_A DTMP kinase, thymidylat 97.1 0.00038 1.3E-08 57.7 4.7 31 55-85 2-35 (195)
490 2og2_A Putative signal recogni 97.1 0.00055 1.9E-08 62.2 6.1 29 49-77 153-181 (359)
491 3c8u_A Fructokinase; YP_612366 97.1 0.00023 7.9E-09 59.8 3.4 28 322-349 20-47 (208)
492 2v9p_A Replication protein E1; 97.1 0.00027 9.2E-09 62.6 3.9 36 318-353 120-155 (305)
493 2if2_A Dephospho-COA kinase; a 97.1 0.00024 8.2E-09 59.5 3.5 29 55-84 3-31 (204)
494 2xb4_A Adenylate kinase; ATP-b 97.1 0.00037 1.3E-08 59.3 4.7 29 55-83 2-30 (223)
495 4gp7_A Metallophosphoesterase; 97.1 0.00014 4.7E-09 59.1 1.9 23 50-72 6-28 (171)
496 3dm5_A SRP54, signal recogniti 97.1 0.0073 2.5E-07 56.2 13.6 36 52-87 99-137 (443)
497 3a00_A Guanylate kinase, GMP k 97.1 0.00024 8.3E-09 58.5 3.4 25 54-78 2-26 (186)
498 2z0h_A DTMP kinase, thymidylat 97.1 0.00033 1.1E-08 58.2 4.3 29 327-355 3-34 (197)
499 2r8r_A Sensor protein; KDPD, P 97.1 0.00045 1.5E-08 57.8 5.0 33 325-357 7-42 (228)
500 2bdt_A BH3686; alpha-beta prot 97.1 0.00028 9.5E-09 58.3 3.8 33 326-359 4-36 (189)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.4e-68 Score=529.99 Aligned_cols=412 Identities=46% Similarity=0.788 Sum_probs=363.0
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++|+|++++|+.|++.+.+|+.+++.+.++++.++++|||+||||||||++|+++|++++.+++.+++.++.+.+.++
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
..+.++.+|..+... .|+||||||+|.+++..+. .++...+.+.+|+..++..... .++++|++||.++.+
T Consensus 282 se~~lr~lF~~A~~~----~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~----~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 282 SESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHHHTTS----CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG----GCEEEEEECSSTTTS
T ss_pred HHHHHHHHHHHHHHc----CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc----CCEEEEEecCChhhc
Confidence 999999999988654 5999999999999987653 3445667888999999876532 268999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc--
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE-- 253 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~-- 253 (441)
|++++|++||+..++++.|+.++|.+|++.++.......+.++..++..+.||+++++..++++|...+.++......
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999888888889999999999999999999999999888777543211
Q ss_pred -------cccceeeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCce
Q 013506 254 -------CAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRG 326 (441)
Q Consensus 254 -------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (441)
......++.+|+..+.....|+..+......+...|++++|++++++.+.+.+.+++.+...+.+.+..++.+
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~g 513 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG 513 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCce
Confidence 1123567889999999999998887777888899999999999999999999999999999999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCC
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTS 406 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~ 406 (441)
+||+||||||||.+|+++|..++.+++.++++++.++|+|++++.++++|+.|+...||||||||+|++++.|+...+++
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~ 593 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC----------
T ss_pred EEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765566
Q ss_pred cchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 407 ITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 407 ~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
++..+|++++||++|||++....|+|+|||
T Consensus 594 ~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp ----CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 677899999999999999998777777665
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=4.6e-52 Score=420.73 Aligned_cols=413 Identities=45% Similarity=0.784 Sum_probs=352.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
-.+++|+|++++++.|.+++..|+.+++.+.++++.++.+++|+||||||||++++++++.++.+++.+++.++...+.+
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhh
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 174 (441)
+....+..+|+.+... .|+++|+||++.+.+.... ......+....++.+++..... ..+++++++|.++.
T Consensus 281 ~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~----~~v~vI~atn~~~~ 352 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS 352 (806)
T ss_dssp HHHHHHHHHHHHHHHH----CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT----SCCEEEEECSCTTT
T ss_pred hHHHHHHHHHHHHHhc----CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc----ccEEEecccCCchh
Confidence 8888899999887755 3899999999999876543 2344567778888888865432 36899999999999
Q ss_pred cCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc-
Q 013506 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE- 253 (441)
Q Consensus 175 l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~- 253 (441)
+++.+.+++||...+.++.|+.++|.+|++.+........+.++..++..+.+++++++..++..+...+.++......
T Consensus 353 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~ 432 (806)
T 1ypw_A 353 IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL 432 (806)
T ss_dssp SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccch
Confidence 9999999899999999999999999999999998888887788999999999999999999999888777665433211
Q ss_pred --------cccceeeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCc
Q 013506 254 --------CAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVR 325 (441)
Q Consensus 254 --------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (441)
......++.+++..+.....+..........+...|++++|++.+++.+.+++.+++.+...+..++..++.
T Consensus 433 ~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~ 512 (806)
T 1ypw_A 433 EDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSK 512 (806)
T ss_dssp HHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCC
T ss_pred hhhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCc
Confidence 112334566777777777766655555666778889999999999999999999999998888888999999
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCC
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST 405 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~ 405 (441)
++||+||||||||++|+++|..++.+++.++++++.++|+|+++..++.+|+.++...|+|+||||+|++++.|+....+
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998765545
Q ss_pred CcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 406 SITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 406 ~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.++...+++++||++||++.....|+|++||
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tT 623 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HHHHHHHHHHHHHTTCC------CCBCCCCC
T ss_pred cchhHHHHHHHHHHHHhcccccCCeEEEEec
Confidence 5567789999999999998876665555554
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-41 Score=305.62 Aligned_cols=248 Identities=33% Similarity=0.584 Sum_probs=220.1
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...|++.| ++|+|++++|+.|++.+.+|+.+|+.|.++|+++++++||+||||||||++|+++|++++.+++.++++
T Consensus 140 ~~~p~v~~---~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 140 EKVPDSTY---DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp ECSCSCCG---GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cCCCCCCH---HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 34566777 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++...+.|+..+.++.+|..+... .|+|+||||+|.+++...... ....+.+.+++..++..... .++
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~V 288 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS----KNI 288 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC----CCE
T ss_pred HhhccccchHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC----CCe
Confidence 999999999999999999998865 499999999999987654222 23346678888888876532 369
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
++|+|||.++.+|+++.|+|||+..++++.|+.++|.+||+.++++.....+.++..++..+.||++++|+.+|++|...
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~ 368 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMY 368 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999988
Q ss_pred HHHhcccccccccceeeeHhhHHhhhhhccc
Q 013506 244 AVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 274 (441)
+.++.. ..++.+|+..++..+.+
T Consensus 369 Air~~~--------~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 369 ALRERR--------IHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHTTC--------SBCCHHHHHHHHHHHHH
T ss_pred HHHcCC--------CCcCHHHHHHHHHHHhC
Confidence 877632 35788888887765543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-40 Score=301.02 Aligned_cols=249 Identities=32% Similarity=0.549 Sum_probs=220.6
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...+++.| ++|+|++++|+.|.+.+.+|+.+++.+.++|+++++++|||||||||||++|+++|.+++.+++.+++.
T Consensus 174 ~~~p~v~~---~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 174 DKSPTESY---SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp ESSCCCCG---GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred ccCCCCcc---eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 45667777 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++.+.+.++.++.++.+|..+... .|+||||||+|.+++...... ......+.+++..++..... .++
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~----~~V 322 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR----GDV 322 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS----SSE
T ss_pred HhhhccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC----CCE
Confidence 999999999999999999988765 499999999999988763222 23346677788888865432 369
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+||+|||.++.||+++.|+|||+..|+++.|+.++|.+||+.++.......+.+++.++..+.||++++|+.+|++|...
T Consensus 323 iVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~ 402 (437)
T 4b4t_I 323 KVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLL 402 (437)
T ss_dssp EEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999998
Q ss_pred HHHhcccccccccceeeeHhhHHhhhhhcccc
Q 013506 244 AVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
++++.. ..++.+|+..+...+.+.
T Consensus 403 Air~~~--------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 403 ALRERR--------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHTTC--------SCBCHHHHHHHHHHHHHH
T ss_pred HHHcCC--------CccCHHHHHHHHHHHhCC
Confidence 887643 347888988887765543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=302.67 Aligned_cols=253 Identities=33% Similarity=0.569 Sum_probs=222.7
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...|++.| ++|+|++++|+.|.+.+.+|+.+++.+.++|+++++++|||||||||||++|+++|++++.+++.+++.
T Consensus 173 ~~~p~~t~---~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 173 DEKPTETY---SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp ESSCSCCG---GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCh---HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34455666 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCch----hhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE----QDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++...+.++..+.++.+|..+.... |+||||||+|.+++....... .....+..++..++..... .++
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~a----P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~----~~V 321 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKA----PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD----DRV 321 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHC----SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS----CSS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcC----CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC----CCE
Confidence 9999999999999999999887664 999999999999876643322 2334567778888776532 368
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+||+|||.++.+|+++.|+|||+..++++.|+.++|.+||+.++.......+.++..++..+.||++++|+.+|++|...
T Consensus 322 iVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (434)
T 4b4t_M 322 KVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMI 401 (434)
T ss_dssp EEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999988
Q ss_pred HHHhcccccccccceeeeHhhHHhhhhhcccccccC
Q 013506 244 AVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRG 279 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 279 (441)
+.++.. ..++.+|+..++....+...+.
T Consensus 402 a~r~~~--------~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 402 ALRNGQ--------SSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHTC--------SSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHcCC--------CCcCHHHHHHHHHHHhCCCCcC
Confidence 877643 3578899999988877765443
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-39 Score=297.05 Aligned_cols=247 Identities=33% Similarity=0.549 Sum_probs=217.4
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...|++.| ++|+|++++|+.|.+.+.+|+.+++.+.++|+++++++||+||||||||++|+++|++++.+++.+++.
T Consensus 201 ~e~P~vt~---~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 201 EEKPDVTY---SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp ESSCSCCC---SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cCCCCCCH---HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 45677777 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++.+.+.++..+.++.+|..+... .|+||||||+|.++....... ........+++..++.... ..++
T Consensus 278 ~L~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~----~~~V 349 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP----RGNI 349 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC----TTTE
T ss_pred HhhcccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC----CCcE
Confidence 999999999999999999988765 499999999999987654222 2233556677777776543 2368
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
++|+|||.++.+|++++|+|||+..++++.|+.++|.+||+.++.......+.+++.++..+.||++++|+.+|++|...
T Consensus 350 iVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~ 429 (467)
T 4b4t_H 350 KVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMF 429 (467)
T ss_dssp EEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999988
Q ss_pred HHHhcccccccccceeeeHhhHHhhhhhcc
Q 013506 244 AVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 273 (441)
++++.. ..++.+|+..++..+.
T Consensus 430 Air~~~--------~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 430 AIRARR--------KVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHHHTC--------SSBCHHHHHHHHHHHH
T ss_pred HHHcCC--------CccCHHHHHHHHHHHh
Confidence 877643 2467888887766543
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=299.98 Aligned_cols=249 Identities=35% Similarity=0.566 Sum_probs=219.7
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...|++.| ++|+|++++|+.|.+.+.+|+.+++.|.++|+++++++|||||||||||++|+++|++++.+++.++++
T Consensus 173 ~~~p~v~~---~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 173 FEQGEITF---DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp EESCSSCS---GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCh---hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34566777 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc----hhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++.+.+.++..+.++.+|..+... .|+||||||+|.+++...... ......+.+|+..++..... .++
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~v 321 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL----GQT 321 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT----TSS
T ss_pred hhccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC----CCe
Confidence 999999999999999999988765 499999999999987653221 22345677888888876532 368
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+||+|||.++.+||+++|+|||+..|+++.|+.++|.+||+.++.......+.++..++..+.||++++|..+|++|...
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~ 401 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFF 401 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888999999999999999999999999988
Q ss_pred HHHhcccccccccceeeeHhhHHhhhhhcccc
Q 013506 244 AVKRSSDANECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
++++.. ..++.+|+..+...+.+.
T Consensus 402 air~~~--------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 402 AIRDDR--------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHTTC--------SSBCHHHHHHHHHHHHHT
T ss_pred HHHcCC--------CCCCHHHHHHHHHHHHhc
Confidence 877643 247888888887766543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-38 Score=293.28 Aligned_cols=245 Identities=31% Similarity=0.534 Sum_probs=218.0
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...|++.| ++|+|++++|+.|.+.+..|+.+++.+.++|+++++++||+||||||||++|+++|++++.+++.+++.
T Consensus 164 ~~~p~v~~---~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 164 NEKPDVTY---ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp ESSCSCCG---GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCCCH---HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 34566667 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++.+.+.|+....++.+|..+... .|+|+||||+|.+++.... ......+.+.+|+..+++.... .++
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~----~~v 312 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS----TNV 312 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS----CSE
T ss_pred hhhccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC----CCE
Confidence 999999999999999999988765 4999999999999876532 2223457788899999986533 368
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEec-CCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVT-VPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~-~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
+||+|||.++.+||++.|+|||+..|++| .|+.++|..|++.++.+.....+.++..++..+.||++++|..+|++|..
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~ 392 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGL 392 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 79999999999999999888888899999999999999999999999999
Q ss_pred HHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 243 SAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.+.++.. ..++.+|+..++..
T Consensus 393 ~a~r~~~--------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 393 RAVRKNR--------YVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHTTC--------SSBCHHHHHHHHHH
T ss_pred HHHHCCC--------CCCCHHHHHHHHHH
Confidence 8887643 24788888887764
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.9e-36 Score=295.40 Aligned_cols=258 Identities=33% Similarity=0.574 Sum_probs=186.8
Q ss_pred ccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 9 SEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 9 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
..+++.| ++++|++++|+.|.+.+.+|+.+++.+.++++.+++++||+||||||||++|+++|.+++.+++.+++.+
T Consensus 470 ~~p~v~w---~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 470 EVPQVTW---EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp BCCCCCS---TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred cCCCCCH---HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 4466777 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+.+.+.++.++.++.+|..+... .|+||||||+|.+++..... +....+++.+|+..++..... .+++
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~----~~V~ 618 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVF 618 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS----SSEE
T ss_pred hhccccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC----CCEE
Confidence 99999999999999999998765 49999999999998765421 223457889999999986543 3689
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
||++||.++.||++++|+|||+..++++.|+.++|.+||+.++++.+...+.++..++..+.||++++|..+|++|...+
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a 698 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHH
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888889999999999999999999999999988
Q ss_pred HHhccccccc-----------------ccceeeeHhhHHhhhhhcccccc
Q 013506 245 VKRSSDANEC-----------------AGVLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 245 ~~~~~~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~~~ 277 (441)
+++....... ...+.++.+||..++...+|+.+
T Consensus 699 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 699 IRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCC
Confidence 8775432110 11234566666666666666544
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.5e-31 Score=253.60 Aligned_cols=272 Identities=47% Similarity=0.780 Sum_probs=224.1
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++++|++.+++.|.+.+..++..++.+..++..++.++||+||||||||++|+++++.++.+++.+++..+...+.++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~ 281 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTH
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcch
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
....+..+|..+... .|++|||||+|.+.+.... ..+...+.+..|+..++.... ..++++|++||.++.+
T Consensus 282 ~~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~----~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 282 SESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ----RAHVIVMAATNRPNSI 353 (489)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT----TSCEEEEEEESCGGGB
T ss_pred hHHHHHHHHHHHHhc----CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc----CCceEEEEecCCcccc
Confidence 888888888877643 4899999999999876543 244566788889999986543 2368999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccccc-
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANEC- 254 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~- 254 (441)
++++.+++||...++++.|+.++|.+|++.++.......+.++..++..+.|++++++..+++.+...+.++.......
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~ 433 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999988888878889999999999999999999999999888776442111
Q ss_pred --------ccceeeeHhhHHhhhhhcccccccCcccccCccccccccCch
Q 013506 255 --------AGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLR 296 (441)
Q Consensus 255 --------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~ 296 (441)
.....++.+++..++....|+..+....+.|...|++++|..
T Consensus 434 ~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp CSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC--------------
T ss_pred ccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 123457889999999999888878888889999999999864
No 11
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=249.52 Aligned_cols=160 Identities=38% Similarity=0.633 Sum_probs=147.3
Q ss_pred ccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 277 TRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 277 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
......+.|..+|++++|++++++.+.+.+.+|+.+...+.+++..|+.++||+||||||||++|+++|..++.+++.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 34445567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
++++.++|+|++++.++.+|..|+...||||||||+|++++.|+.++++.+....+++++||++|||+.....|+|+|||
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 99999999999999999999999999999999999999999998776666667789999999999999887766666555
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=233.71 Aligned_cols=257 Identities=42% Similarity=0.639 Sum_probs=199.4
Q ss_pred cccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 10 EHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 10 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
.+++.| ++|+|++++|+.|.+.+..|+..+..+.++++..+.+++|+||||||||++++++++.++..++.+++.++
T Consensus 4 ~~~~~~---~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l 80 (274)
T 2x8a_A 4 VPNVTW---ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL 80 (274)
T ss_dssp -----------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCCCCH---HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH
Confidence 456677 89999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
...+.++..+.+..+|+.+... .|+++|+||++.+....... .....+...+++..++..... ..++++++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~----~~~i~ia~ 152 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR----QQVFIMAA 152 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT----CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST----TCEEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc----CCEEEEee
Confidence 8777777778888888876533 38999999999876543211 111224566777777765432 25889999
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc---CCCCCcccHHHHHHHC--CCCCHHHHHHHHHHHHHH
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK---VPLDANVDLEAIATSC--NGYVGADLEALCREATMS 243 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~---~~~~~~~~~~~l~~~~--~g~~~~~i~~l~~~a~~~ 243 (441)
+|.++.+|+++.|++||+..++++.|+.++|.+|++.++.. .....+.+++.++..+ .||+++++..++++|...
T Consensus 153 tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~ 232 (274)
T 2x8a_A 153 TNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASIC 232 (274)
T ss_dssp ESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 2345577899999875 599999999999999988
Q ss_pred HHHhccccc---ccccceeeeHhhHHhhhhhcccccc
Q 013506 244 AVKRSSDAN---ECAGVLSVTMEDWRHARSVVGPSIT 277 (441)
Q Consensus 244 ~~~~~~~~~---~~~~~~~~~~e~~~~~~~~~~~~~~ 277 (441)
+.++..... .......++.+|+..++....|+..
T Consensus 233 a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 233 ALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHC-----------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHhhccccccccCCeecHHHHHHHHHHhcCCCC
Confidence 887643221 1122346889999999988887654
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.7e-30 Score=236.77 Aligned_cols=230 Identities=32% Similarity=0.556 Sum_probs=195.3
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEc
Q 013506 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVIS 85 (441)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-~~~~~~v~ 85 (441)
+...+++.| ++|+|++++|+.|.+.+.+|+.+++.+.. +..+++++||+||||||||++|+++++.+ +.+++.++
T Consensus 3 ~~~~~~~~~---~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 3 VIERPNVKW---SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp EEECCCCCG---GGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred eecCCCCCH---HHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 345567778 89999999999999999999988888764 35677999999999999999999999999 88899999
Q ss_pred cCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
+.++...+.+.....+..+|..+... +|++|||||+|.+.+..... .....+...+++..++..... ..+++
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~---~~~v~ 151 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD---NDGIL 151 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHT----SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC---CTTEE
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhc----CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc---CCCEE
Confidence 99998888898888888888877643 58999999999998765432 334556778888888875421 23689
Q ss_pred EEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 165 VVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 165 vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+|++||.++.+++++.| ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||+++++..+++.+...
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred EEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998877654 456789999999999999999999999988
Q ss_pred HHHhcc
Q 013506 244 AVKRSS 249 (441)
Q Consensus 244 ~~~~~~ 249 (441)
+.++..
T Consensus 230 a~r~~~ 235 (322)
T 1xwi_A 230 PVRKVQ 235 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=2.9e-31 Score=240.12 Aligned_cols=257 Identities=33% Similarity=0.570 Sum_probs=208.2
Q ss_pred cccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccC
Q 013506 8 MSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPH 87 (441)
Q Consensus 8 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~ 87 (441)
...++..| ++++|++++++.|.+.+..|+.+++.+.++++.++.+++|+||||||||++++++++.++.+++.+++.
T Consensus 7 ~~~~~~~~---~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 7 VEVPQVTW---EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp EECCCCCG---GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred ccCCCCCH---HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 44556667 789999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
++...+.+.....+..+|..+... .|+++||||+|.+.+..... .....+.+..++..++.... ..++
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~----~~~v 155 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST----KKNV 155 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT----TSSE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC----CCCE
Confidence 877766677777778888777643 48999999999987543211 12233567788888886432 2368
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+||++||.++.+++++.+++||...++++.|+.++|.+|++.++.......+.++..++..+.||++++++.+++.+...
T Consensus 156 ~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 156 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKL 235 (301)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777777899999999999999999999999887
Q ss_pred HHHhccccccc-----------------ccceeeeHhhHHhhhhhcccc
Q 013506 244 AVKRSSDANEC-----------------AGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 244 ~~~~~~~~~~~-----------------~~~~~~~~e~~~~~~~~~~~~ 275 (441)
+..+....... .....++.+|+..++....++
T Consensus 236 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 236 AIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp HHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCS
T ss_pred HHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 77654321100 011346666777766666554
No 15
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.98 E-value=1.4e-30 Score=265.52 Aligned_cols=369 Identities=19% Similarity=0.217 Sum_probs=235.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++.++..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 5678999999999998887743 256789999999999999999999887 45566666
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
...+. ..+.+.....+..++..... ..+.+|||||+|.+.+...... ...+....+...++. +.+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~-~~~~~~~~L~~~l~~--------~~~ 316 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASG-GQVDAANLIKPLLSS--------GKI 316 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSS-CHHHHHHHHSSCSSS--------CCC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCc-chHHHHHHHHHHHhC--------CCe
Confidence 65554 34556777777777766543 2479999999999976554321 122333333333322 246
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC----CCCC-cccHHHHHHHCC-----CC
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----PLDA-NVDLEAIATSCN-----GY 228 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~----~~~~-~~~~~~l~~~~~-----g~ 228 (441)
.+|++++.++ .+++++.+ ||. .+.++.|+.+++.+|+..+...+ .... +..+..++..+. .+
T Consensus 317 ~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 317 RVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp EEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred EEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 7888887643 56788988 997 79999999999999998766442 2221 222444444332 34
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhcccccccCccc-------ccCccccccccCchhHHHH
Q 013506 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTV-------EIPKVTWEDIGGLRDLKKK 301 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~g~~~~k~~ 301 (441)
.+..+..+++++.......... .....++.+++..+.............. .....-...+.|++...+.
T Consensus 394 lp~~~i~lld~a~~~~~~~~~~----~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~ 469 (758)
T 1r6b_X 394 LPDKAIDVIDEAGARARLMPVS----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA 469 (758)
T ss_dssp TTHHHHHHHHHHHHHHHHSSSC----CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccccc----ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 4556666676665443321110 1123466777776655432211100000 0001112345677776666
Q ss_pred HHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh------------ccCchH
Q 013506 302 LQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM------------YVGESE 369 (441)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~------------~~g~~~ 369 (441)
+...+..... .......|.+++||+||||||||++|+++|..++.+++.++++++... |+|..+
T Consensus 470 l~~~i~~~~~----g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~ 545 (758)
T 1r6b_X 470 LTEAIKMARA----GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQ 545 (758)
T ss_dssp HHHHHHHHHT----TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHH
T ss_pred HHHHHHHHhc----ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccc
Confidence 6655432110 001122455689999999999999999999999999999999887553 444332
Q ss_pred HHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC----------CCCeEEEEeeee
Q 013506 370 ALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------QAKVIIYPISFI 437 (441)
Q Consensus 370 ~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~v~~~~~~~ 437 (441)
. ..+....+..+++||||||+|++.+ .+++.|++.||.-. ..+.+||++||.
T Consensus 546 ~--~~l~~~~~~~~~~vl~lDEi~~~~~--------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 546 G--GLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp T--THHHHHHHHCSSEEEEEETGGGSCH--------------HHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred c--chHHHHHHhCCCcEEEEeCccccCH--------------HHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 2 2344555567788999999999853 68999999998522 145678888885
No 16
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.97 E-value=1.1e-30 Score=265.50 Aligned_cols=355 Identities=18% Similarity=0.243 Sum_probs=214.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++.++.+.+++.. ..+.++||+||||||||++|+.++..+ +..++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 4678999999999999988754 345789999999999999999999997 56666666
Q ss_pred cCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 013506 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 165 (441)
+ ...+.++....+..++..+.. ..+.|||||. .......|+..++. ..+.+
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD~--------------~~~~~~~L~~~l~~--------~~v~~ 294 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQ----AGNIILFIDA--------------AIDASNILKPSLAR--------GELQC 294 (758)
T ss_dssp ------------CTTHHHHHHHHHT----CCCCEEEECC----------------------CCCTTS--------SSCEE
T ss_pred c---cccccchHHHHHHHHHHHHHh----cCCEEEEEcC--------------chhHHHHHHHHHhc--------CCEEE
Confidence 5 233445555567777776654 3588999991 11233344444432 24789
Q ss_pred EEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCC----CCc-ccHHHHHHHC-----CCCCH
Q 013506 166 VASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL----DAN-VDLEAIATSC-----NGYVG 230 (441)
Q Consensus 166 i~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~----~~~-~~~~~l~~~~-----~g~~~ 230 (441)
|++||... .+++++.+ ||. .+.++.|+.+++.+|++.+...+.. ... ..+..++..+ .++.+
T Consensus 295 I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 99999887 78999999 995 7999999999999999977665322 111 1133333332 23444
Q ss_pred HHHHHHHHHHHHHHHHhcccccc-----------------------------------------------------cccc
Q 013506 231 ADLEALCREATMSAVKRSSDANE-----------------------------------------------------CAGV 257 (441)
Q Consensus 231 ~~i~~l~~~a~~~~~~~~~~~~~-----------------------------------------------------~~~~ 257 (441)
.....++..+......+...... ....
T Consensus 372 ~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 451 (758)
T 3pxi_A 372 DKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQEN 451 (758)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC-
T ss_pred cHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 55555555544332211110000 0001
Q ss_pred eeeeHhhHHhhhhhcccccccCc-c------cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEE
Q 013506 258 LSVTMEDWRHARSVVGPSITRGV-T------VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLH 330 (441)
Q Consensus 258 ~~~~~e~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 330 (441)
..++.+++............... . ......-...+.|++...+.+...+....... ..+..|.+++||+
T Consensus 452 ~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~ 527 (758)
T 3pxi_A 452 SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFL 527 (758)
T ss_dssp --CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEE
T ss_pred cccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEE
Confidence 11222222222221110000000 0 00000112346677777777666655321110 1123444589999
Q ss_pred CCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCc
Q 013506 331 GPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSI 407 (441)
Q Consensus 331 Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~ 407 (441)
||||||||++|+++|..+ +.+++.++++++.+.+... ...++...+..+++||||||||++.
T Consensus 528 Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~----------- 592 (758)
T 3pxi_A 528 GPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH----------- 592 (758)
T ss_dssp SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-----------
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-----------
Confidence 999999999999999997 6789999999988876554 2234444555677899999999985
Q ss_pred chhhHHHHHHHHHhcCC----------CCCCeEEEEeeee
Q 013506 408 TVGERLLSTLLTEMDGL----------EQAKVIIYPISFI 437 (441)
Q Consensus 408 ~~~~~~~~~ll~~l~~~----------~~~~~v~~~~~~~ 437 (441)
..+.+.||+.||+- ...+.+||++||.
T Consensus 593 ---~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 593 ---PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 37789999999862 2345688888884
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=2.9e-30 Score=236.03 Aligned_cols=230 Identities=30% Similarity=0.547 Sum_probs=193.1
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 7 IMSEHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 7 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
+...++..| ++++|++.+|+.|.+.+..|..++..+.. +..++.++||+||||||||++|+++++.++.+++.+++
T Consensus 9 ~~~~~~~~~---~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 9 LSEKPNVKW---EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp EEECCCCCG---GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred eecCCCCCH---HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 345566667 89999999999999999998888887766 45677899999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 013506 87 HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (441)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 165 (441)
.++...+.+.....+..+|..+... +|+||||||+|.+.+... .......+....++..++..... ..++++
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~v 157 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND---SQGVLV 157 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHT----SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTS---CCCEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHhc----CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccccc---CCceEE
Confidence 9998888899888888888877654 589999999999987543 22333456778888888765322 236899
Q ss_pred EEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 013506 166 VASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSA 244 (441)
Q Consensus 166 i~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~ 244 (441)
|++||.++.+++++.+ ||...++++.|+.++|.+|++.++...... .+.++..++..+.||+++++..+++.+...+
T Consensus 158 i~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a 235 (322)
T 3eie_A 158 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 235 (322)
T ss_dssp EEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHH
T ss_pred EEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999998877654 4567899999999999999999999998887
Q ss_pred HHhcc
Q 013506 245 VKRSS 249 (441)
Q Consensus 245 ~~~~~ 249 (441)
.++..
T Consensus 236 ~r~~~ 240 (322)
T 3eie_A 236 IRKIQ 240 (322)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 18
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-31 Score=239.72 Aligned_cols=156 Identities=35% Similarity=0.599 Sum_probs=144.5
Q ss_pred ccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+.|..+|++++|++++++.+.+.+.+++.+...+.+.+.+++.++||+||||||||++|+++|..++.+++.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.++|+|++++.++.+|..|+...||||||||+|.+++.|+.++++.+....+.+++||++||++.....|+|+|||
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 9999999999999999999999999999999999999998776666667789999999999999887666655554
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=1.5e-29 Score=233.75 Aligned_cols=222 Identities=30% Similarity=0.527 Sum_probs=183.8
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++|+|++.+++.|.+.+..|+.+++.+.. +..++.++||+||||||||++|+++++.++.+++.+++.++...+.+.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch
Confidence 4489999999999999999998888888776 556778999999999999999999999999999999999888888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCC-CCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRD-HRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
....+..+|..+... .|+||||||+|.+.+... .......+....++..++..... ..+++||++||.++.+
T Consensus 128 ~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 128 SEKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND---SQGVLVLGATNIPWQL 200 (355)
T ss_dssp CHHHHHHHHHHHHHT----SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC------CCEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHc----CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc---CCCeEEEeecCCcccC
Confidence 888888888776543 589999999999976543 22334456778888888765321 2368999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhc
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRS 248 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~ 248 (441)
++++.+ ||+..++++.|+.++|.+|++.++...... .+.++..++..+.||++++|..+++.+...+.++.
T Consensus 201 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 201 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp CHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999998877643 45678999999999999999999999998888764
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.6e-29 Score=223.95 Aligned_cols=242 Identities=39% Similarity=0.646 Sum_probs=202.4
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++++|++++++.|.+.+..+...++.+.++++.++.+++|+||||||||++++++++.++.+++.+++..+...+.+.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTH
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccch
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~ 172 (441)
....+...|..+... .|++|||||+|.+.+..... .......+..++..++.... ..++++|+++|.+
T Consensus 95 ~~~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~----~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 95 GASLVKDIFKLAKEK----APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA----RGDVKIIGATNRP 166 (285)
T ss_dssp HHHHHHHHHHHHHHT----CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS----SSSEEEEEECSCG
T ss_pred HHHHHHHHHHHHHHc----CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC----CCCEEEEEeCCCc
Confidence 888888888776543 48999999999997654322 12223444445555543322 2368999999999
Q ss_pred CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccc
Q 013506 173 DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN 252 (441)
Q Consensus 173 ~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~ 252 (441)
+.+++++.+++||...+.++.|+.+++.+|++.++.......+.++..++..+.|+++++++.+++.+...+..+...
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~-- 244 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRD-- 244 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCS--
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC--
Confidence 999999999999999999999999999999999998887777778999999999999999999999998888776432
Q ss_pred ccccceeeeHhhHHhhhhhccc
Q 013506 253 ECAGVLSVTMEDWRHARSVVGP 274 (441)
Q Consensus 253 ~~~~~~~~~~e~~~~~~~~~~~ 274 (441)
.++.+++..++....+
T Consensus 245 ------~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 245 ------YVTMDDFRKAVEKIME 260 (285)
T ss_dssp ------SBCHHHHHHHHHHHHH
T ss_pred ------cCCHHHHHHHHHHHHh
Confidence 4778888877765543
No 21
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=241.65 Aligned_cols=156 Identities=35% Similarity=0.604 Sum_probs=144.2
Q ss_pred ccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+.|..+|++++|++.+++.+.+.+.+++.+...+.+++..|+.++||+||||||||++|+++|..++.+++.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.++|+|++++.++.+|..|+...||||||||+|.+++.|..++.+.+....+++++||++|||+.+.+.|+|+|||
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 9999999999999999999999999999999999999998877767777889999999999999986655555444
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=1.1e-28 Score=233.04 Aligned_cols=241 Identities=39% Similarity=0.603 Sum_probs=200.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..|++++|++++|+.+.+.+.. +..+..+.+++...+.+++|+||||||||+++++++++++.+++.+++.++...+.+
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 4568999999999999998866 567788889999999999999999999999999999999999999999999888888
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
.....++.+|..+... .|+||||||+|.+.+.... ........+.+++..++.... ..+++||++||.
T Consensus 92 ~~~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~----~~~viVIaaTn~ 163 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS----KEGIIVMAATNR 163 (476)
T ss_dssp HHHHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG----GGTEEEEEEESC
T ss_pred ccHHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC----CCCEEEEEecCC
Confidence 8888888888877643 4999999999999765431 222334667888888875432 125899999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+++++.+++||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++++.++++++...+..+..
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-- 241 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR-- 241 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC--
Confidence 999999999999999999999999999999999999888777777899999999999999999999999887765432
Q ss_pred cccccceeeeHhhHHhhhhhcc
Q 013506 252 NECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~~ 273 (441)
..++.+++..+.....
T Consensus 242 ------~~I~~~dl~~al~~v~ 257 (476)
T 2ce7_A 242 ------DKITMKDFEEAIDRVI 257 (476)
T ss_dssp ------SSBCHHHHHHHHHHHC
T ss_pred ------CeecHHHHHHHHHHHh
Confidence 2477778777766554
No 23
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-30 Score=241.12 Aligned_cols=156 Identities=36% Similarity=0.603 Sum_probs=143.4
Q ss_pred ccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 281 TVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 281 ~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+.|..+|++++|++.+++.+.+.+.+++.+...+.+.+.+++.++||+||||||||++|+++|..++.+++.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.++|+|++++.++.+|..|+...||||||||+|.+++.|..++++.+....+.++.||++||++.....|+|+|||
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 9999999999999999999999999999999999999998766555556788999999999999987766666554
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.97 E-value=3e-29 Score=257.63 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=109.4
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++.++.+.+++.. ..+.+++|+||||||||++++.++..+ +.+++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 5678999999999998887744 245689999999999999999999987 67888888
Q ss_pred cCccc--cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVH--KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
+..+. ..+.++....+..++...... ..+.||||||+|.+.+...... .......+...+... .+
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g--~~~~~~~L~~~l~~~--------~i 300 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEG--AVDAGNMLKPALARG--------EL 300 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC---------------------HHHHHTT--------CC
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccc--hHHHHHHHHHHHhCC--------Ce
Confidence 87765 345566677777777766532 3478999999999875543221 123444555555542 35
Q ss_pred EEEEEcCCCC----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc
Q 013506 164 VVVASTNRVD----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 164 ~vi~~~~~~~----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
.+|++++.++ .+++++.+ ||. .+.+++|+.+++.+|++.++..
T Consensus 301 ~~I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 301 RLIGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEK 347 (854)
T ss_dssp CEEEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhh
Confidence 6778777654 47899998 998 5999999999999999876553
No 25
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-30 Score=239.13 Aligned_cols=155 Identities=40% Similarity=0.673 Sum_probs=143.8
Q ss_pred cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
.+.|..+|++++|++.+++.+.+.+.+++.+...+.++|..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
++|+|++++.++.+|..|+...|||+||||+|.+++.|+....+.+....+++++||++|||+.....|+|+|||
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 999999999999999999999999999999999999998777667777889999999999999886665555554
No 26
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=237.42 Aligned_cols=154 Identities=38% Similarity=0.630 Sum_probs=144.3
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
+.|..+|++++|++++++.+.+.+.+++.+...+.++++.++.++||+||||||||++|+++|..++.+++.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+|+|++++.++.+|..|+...||||||||+|.+++.|+.++.+......+.+++||++||++.....|+|+|||
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999998877766777788999999999999887776666554
No 27
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=6.6e-28 Score=213.76 Aligned_cols=241 Identities=36% Similarity=0.562 Sum_probs=194.0
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
...+++++|++.+++.+.+.+.. +..+..+.+++...+.+++|+||||||||++++++++.++.+++.+++..+...+.
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 86 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 86 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhh
Confidence 45569999999999999998765 56667777788888899999999999999999999999999999999999888888
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
+.....+..+|+.+.. ..|+++||||+|.+.+.... ......+.+..++..++.... ..++++|+++|
T Consensus 87 ~~~~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI~~tn 158 (257)
T 1lv7_A 87 GVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----NEGIIVIAATN 158 (257)
T ss_dssp CCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS----SSCEEEEEEES
T ss_pred hhhHHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc----CCCEEEEEeeC
Confidence 8888888888887653 34899999999998765432 112233567777777776432 23689999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
.++.+++++.+++||+..+.++.|+.++|.+|++.++.......+.+...++..+.|++++++..+++.+...+..+..
T Consensus 159 ~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~- 237 (257)
T 1lv7_A 159 RPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK- 237 (257)
T ss_dssp CTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999998887777777788999999999999999999999887766432
Q ss_pred ccccccceeeeHhhHHhhhhhc
Q 013506 251 ANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
..++.+++..+....
T Consensus 238 -------~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 238 -------RVVSMVEFEKAKDKI 252 (257)
T ss_dssp -------SSBCHHHHHHHHHHH
T ss_pred -------CcccHHHHHHHHHHH
Confidence 247777877766543
No 28
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=1.8e-28 Score=232.97 Aligned_cols=227 Identities=32% Similarity=0.559 Sum_probs=179.5
Q ss_pred cccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEccCc
Q 013506 10 EHNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHS 88 (441)
Q Consensus 10 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-~~~~~~v~~~~ 88 (441)
.++..| ++|+|++.+++.|.+.+..|+.++..+.. +..+++++||+||||||||++|+++++.+ +.+++.+++.+
T Consensus 128 ~~~~~~---~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 128 RPNVKW---SDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp CCCCCG---GGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred CCCCCH---HHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 344455 89999999999999999888888777654 34567899999999999999999999999 88899999998
Q ss_pred cccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 89 VHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
+...+.+.....+..+|..+.. ..|+||||||+|.+.+.... ......+....++..++.... ...+++||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---~~~~v~vI~ 276 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV---DNDGILVLG 276 (444)
T ss_dssp --------CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC---CCSSCEEEE
T ss_pred HHhhhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc---CCCCEEEEe
Confidence 8877777776677777776654 35899999999999765432 233455677777777766432 223689999
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~ 246 (441)
+||.++.+++++.| ||+..++++.|+.++|..|++.++...+.. .+.++..++..+.||+++++..+++.+...+++
T Consensus 277 atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r 354 (444)
T 2zan_A 277 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVR 354 (444)
T ss_dssp EESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHH
T ss_pred cCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998776543 456789999999999999999999999988877
Q ss_pred hcc
Q 013506 247 RSS 249 (441)
Q Consensus 247 ~~~ 249 (441)
+..
T Consensus 355 ~~~ 357 (444)
T 2zan_A 355 KVQ 357 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=211.55 Aligned_cols=238 Identities=33% Similarity=0.504 Sum_probs=173.9
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccch
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGES 97 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~ 97 (441)
+++++|++++|+.|.+.+.. +..+..+..++...+.+++|+||||||||++++++++.++.+++.+++..+...+.+..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLG 83 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChh
Confidence 48999999999999998866 56677788888899999999999999999999999999999999999998887777777
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-----chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC
Q 013506 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV 172 (441)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~ 172 (441)
...+..+|..+... .|++|||||+|.+....... .......+..++..++.... ..++++|+++|.+
T Consensus 84 ~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~----~~~~~vi~~tn~~ 155 (262)
T 2qz4_A 84 AARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT----TDHVIVLASTNRA 155 (262)
T ss_dssp HHHHHHHHHHHHHT----CSEEEEEECC-------------------CHHHHHHHHHHHTCCT----TCCEEEEEEESCG
T ss_pred HHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC----CCCEEEEecCCCh
Confidence 77777777776543 48999999999986544221 11122445566666665332 2368999999999
Q ss_pred CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 173 DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD--LEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 173 ~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~--~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
+.+++++.+++||+..++++.|+.++|.+|++.++.......... ...++..+.|++++++..+++.+...+..+..
T Consensus 156 ~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~- 234 (262)
T 2qz4_A 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH- 234 (262)
T ss_dssp GGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-------
T ss_pred hhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 999999999899999999999999999999999988776654433 47889999999999999999988766554321
Q ss_pred ccccccceeeeHhhHHhhhhhc
Q 013506 251 ANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
..++.+++..++...
T Consensus 235 -------~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 235 -------TSVHTLNFEYAVERV 249 (262)
T ss_dssp ---------CCBCCHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHh
Confidence 235556666555543
No 30
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=7.3e-27 Score=221.93 Aligned_cols=242 Identities=36% Similarity=0.565 Sum_probs=196.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..|++++|++++|+.+.+++.. +..+..+.+++...+.+++|+||||||||++++++++.++.+++.+++.++...+.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 4569999999999999998765 556777888888888999999999999999999999999999999999998887777
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
.....+..+|+.+.. ..|+++||||+|.+...... ........+.+++..++.... ...+++++++|.
T Consensus 107 ~~~~~v~~lfq~a~~----~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~----~~~viviAatn~ 178 (499)
T 2dhr_A 107 VGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAATNR 178 (499)
T ss_dssp HHHHHHHHHTTTSSS----SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS----SCCCEEEECCSC
T ss_pred hHHHHHHHHHHHHHh----cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc----CccEEEEEecCC
Confidence 777777777765432 24799999999998754432 122334566777777775432 225799999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+|+++.|++||+..+.++.|+.++|.+|++.++.......+.++..++..+.|+++++++++++++...+.++.
T Consensus 179 p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--- 255 (499)
T 2dhr_A 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--- 255 (499)
T ss_dssp GGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---
T ss_pred hhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 99999999999999999999999999999999998887777777789999999999999999999999887665432
Q ss_pred cccccceeeeHhhHHhhhhhccc
Q 013506 252 NECAGVLSVTMEDWRHARSVVGP 274 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~~~~~~~ 274 (441)
...++.+++..+.....+
T Consensus 256 -----~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 256 -----RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp -----CSSCCSHHHHHHHHHHTT
T ss_pred -----CCccCHHHHHHHHHHHhc
Confidence 124777888877765543
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=213.68 Aligned_cols=251 Identities=33% Similarity=0.535 Sum_probs=195.7
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++++|++++++.|.+.+..|+..+..+...+ .++.++||+||||||||++|++++..++.+++.+++..+...+.+.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGE 160 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccch
Confidence 448999999999999999998877777665543 5678999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC-CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH-RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
....+..+|..+.. .++++|||||+|.+.+.... ......+.+..++..++..... ...++++|++||.++.+
T Consensus 161 ~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~--~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 161 GEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQEI 234 (357)
T ss_dssp HHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC------CCCCEEEEEEESCGGGB
T ss_pred HHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc--CCCCEEEEEecCChhhC
Confidence 77777777776653 34899999999999765432 2233456677788888764322 12368999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccccc--
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDAN-- 252 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~-- 252 (441)
++++.+ ||...++++.|+.+++.+++..++...... .+..+..++..+.|++++++..+++.+...+.++.....
T Consensus 235 ~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~ 312 (357)
T 3d8b_A 235 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA 312 (357)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----
T ss_pred CHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999 999899999999999999999988765443 344588899999999999999999998887776543211
Q ss_pred --ccccceeeeHhhHHhhhhhccccc
Q 013506 253 --ECAGVLSVTMEDWRHARSVVGPSI 276 (441)
Q Consensus 253 --~~~~~~~~~~e~~~~~~~~~~~~~ 276 (441)
.......++.+|+..++....|+.
T Consensus 313 ~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 313 TITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp ------CCCBCHHHHHHHHHHHGGGC
T ss_pred cccccccCCcCHHHHHHHHHhcCCCC
Confidence 112234678888888887776654
No 32
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=4.3e-26 Score=201.70 Aligned_cols=236 Identities=37% Similarity=0.604 Sum_probs=186.1
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|+++++..+.+.... +..+..+..+++..+.+++|+|||||||||+++++++.++..++.+++..+.....+
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~ 91 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 91 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhh
Confidence 3458999999999999987765 456677888888888889999999999999999999999989999988777666666
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
.....+..+|+.+... .|+++++||+|.+...... ........+..++..++..... ..+++++++|.
T Consensus 92 ~~~~~i~~~~~~~~~~----~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~----~~~i~~a~t~~ 163 (254)
T 1ixz_A 92 VGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD----TAIVVMAATNR 163 (254)
T ss_dssp HHHHHHHHHHHHHTTS----SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT----CCEEEEEEESC
T ss_pred HHHHHHHHHHHHHHhc----CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC----CCEEEEEccCC
Confidence 6666677777765422 3799999999988654321 1222345566777777654322 24788999999
Q ss_pred CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccc
Q 013506 172 VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDA 251 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~ 251 (441)
++.+++++.+++||+..+.++.|+.++|.+|++.+........+.++..++..+.|++++++..+++.+...+..+..
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~-- 241 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR-- 241 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999888877777777799999999999999999999998877765421
Q ss_pred cccccceeeeHhhHHhh
Q 013506 252 NECAGVLSVTMEDWRHA 268 (441)
Q Consensus 252 ~~~~~~~~~~~e~~~~~ 268 (441)
..++.+++..+
T Consensus 242 ------~~I~~~dl~~a 252 (254)
T 1ixz_A 242 ------RKITMKDLEEA 252 (254)
T ss_dssp ------SSBCHHHHHHH
T ss_pred ------CCcCHHHHHHH
Confidence 23666666554
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=6.2e-26 Score=205.68 Aligned_cols=251 Identities=31% Similarity=0.483 Sum_probs=193.4
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++++|++++++.|.+.+..+..+++.+...+ .++.+++|+||||||||++++++++.++.+++.+++..+...+.+.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~ 97 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGD 97 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSC
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccch
Confidence 348999999999999999988877777766554 4578999999999999999999999999999999999988888887
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
.......++..+.. ..|++|||||+|.+.+..... ..........++..++...... ...++++|++||.++.+
T Consensus 98 ~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 98 GEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP-DGDRIVVLAATNRPQEL 172 (297)
T ss_dssp HHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-------CEEEEEEESCGGGB
T ss_pred HHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC-CCCcEEEEeecCChhhC
Confidence 77777777766653 358999999999997654322 1223456667777777654321 11358999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc-
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE- 253 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~- 253 (441)
++++.+ ||...++++.|+.+++..|+..++...... .+..+..++..+.|++++++..+++.+...+.++......
T Consensus 173 ~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~ 250 (297)
T 3b9p_A 173 DEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250 (297)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----
T ss_pred CHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999 999899999999999999999988765543 3445888999999999999999999988877766532211
Q ss_pred ---cccceeeeHhhHHhhhhhcccc
Q 013506 254 ---CAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 254 ---~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
......++.+|+..++....++
T Consensus 251 ~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 251 CLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp ---CCCCCCCCHHHHHHHTTSCCCS
T ss_pred cccccccCCcCHHHHHHHHHHcCCC
Confidence 1123457788888777766554
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=6.8e-26 Score=212.67 Aligned_cols=250 Identities=31% Similarity=0.486 Sum_probs=188.7
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~ 96 (441)
.+++++|++.+++.|.+++..+..+++.+...+ .++.++||+||||||||++|++++..++.+++.+++..+...+.+.
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~ 191 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGE 191 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccch
Confidence 468999999999999999988888777776655 4568999999999999999999999999999999999998888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
....+..+|..+... .+++|||||+|.+....... .....+.+..++..++..... ...+++||++||.++.+
T Consensus 192 ~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 192 GEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSA--GDDRVLVMGATNRPQEL 265 (389)
T ss_dssp CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-------CEEEEEEESCGGGC
T ss_pred HHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccccc--CCCCEEEEEecCCchhc
Confidence 888888888776643 47999999999997654322 233456777788777754332 12368999999999999
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccc-
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLD-ANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANE- 253 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~- 253 (441)
++++.+ ||...++++.|+.+++.+|+..++...... .+..+..++..+.|++++++..+++.+...+.++......
T Consensus 266 ~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~ 343 (389)
T 3vfd_A 266 DEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVK 343 (389)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---
T ss_pred CHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999 998889999999999999999988776543 3345889999999999999999999988887776433211
Q ss_pred ---cccceeeeHhhHHhhhhhcccc
Q 013506 254 ---CAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 254 ---~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
......++.+|+..++....++
T Consensus 344 ~~~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 344 NMSASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHCCCS
T ss_pred ccchhhcCCcCHHHHHHHHHHcCCC
Confidence 1223457777887776655543
No 35
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=4.7e-25 Score=197.47 Aligned_cols=237 Identities=37% Similarity=0.591 Sum_probs=185.2
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
...+++++|++++++.+.+.... +..+..+..+++..+.+++|+|||||||||+++++++.++..++.+++..+.....
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 34568999999999999987755 45567788888888888999999999999999999999998999998877766666
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCC----CchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDH----RREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
+.....+..+|+.+... .|+++++||++.+...... ........+..++..++.... ...+++++++|
T Consensus 115 ~~~~~~i~~~~~~~~~~----~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~----~~~~i~~a~t~ 186 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAATN 186 (278)
T ss_dssp THHHHHHHHHHHHHHTS----CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT----TCCEEEEEEES
T ss_pred hHHHHHHHHHHHHHHhc----CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC----CCCEEEEEecC
Confidence 66666677777776532 3799999999987654321 112223455566666654332 22478899999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
.++.+++++.+++||+..+.++.|+.++|.+|++.+........+.++..++..+.|+++++++.+++.+...+..+..
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~- 265 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR- 265 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999999999999999999999999999999988877766777799999999999999999999998877655321
Q ss_pred ccccccceeeeHhhHHhh
Q 013506 251 ANECAGVLSVTMEDWRHA 268 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~ 268 (441)
..++.+++..+
T Consensus 266 -------~~I~~~dl~~a 276 (278)
T 1iy2_A 266 -------RKITMKDLEEA 276 (278)
T ss_dssp -------CSBCHHHHHHH
T ss_pred -------CCcCHHHHHHH
Confidence 23666776554
No 36
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.94 E-value=3.5e-26 Score=251.42 Aligned_cols=330 Identities=15% Similarity=0.178 Sum_probs=203.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEccCccccccccchHHHHHHHHHHHHhh----------h-hcCCCeE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASSH----------A-LSGKPSV 119 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~i 119 (441)
.++++||+||||||||++|+.++... +..++.++.+.... ...+...+...... . ..+++.|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 46899999999999999996555444 55566666554332 12233333332110 0 1345689
Q ss_pred EEEccccccccCCCCCchhhHHHHHHHHHH---HhcCCCCCCCCCeEEEEEEcCCCC-----ccCHHHhhCCccceEEEe
Q 013506 120 VFIDEIDALCPRRDHRREQDVRIASQLFTL---MDSNKPSKTSVPHVVVVASTNRVD-----AIDPALRRSGRFDAEVEV 191 (441)
Q Consensus 120 l~iDe~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~ 191 (441)
+||||+|....+. .+.+...+.+++++.. ++..........++.+|++||++. .+++++.| || .++++
T Consensus 1340 lFiDEinmp~~d~-yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i 1415 (2695)
T 4akg_A 1340 LFCDEINLPKLDK-YGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AILYL 1415 (2695)
T ss_dssp EEEETTTCSCCCS-SSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEEC
T ss_pred EEecccccccccc-cCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEEEe
Confidence 9999999643322 2334455555555532 111111122234689999999994 89999999 99 58999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCC-cc--cHHHH-----------HHH-------CCCCCHHHHHHHHHHH----------
Q 013506 192 TVPTAEERFEILKLYTKKVPLDA-NV--DLEAI-----------ATS-------CNGYVGADLEALCREA---------- 240 (441)
Q Consensus 192 ~~p~~~~~~~il~~~~~~~~~~~-~~--~~~~l-----------~~~-------~~g~~~~~i~~l~~~a---------- 240 (441)
+.|+.+++.+|+..++....... +. ....+ ... ..-|+.||+.++++..
T Consensus 1416 ~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~~~ 1495 (2695)
T 4akg_A 1416 GYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGPRQ 1495 (2695)
T ss_dssp CCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhhhc
Confidence 99999999999988765432111 10 01111 111 1245667766555543
Q ss_pred ---------HHHHHHhcccccccccceeeeHhhHHhhhhhcccccc------cCcc-cccCccccccccCchhHHHHHHH
Q 013506 241 ---------TMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSIT------RGVT-VEIPKVTWEDIGGLRDLKKKLQQ 304 (441)
Q Consensus 241 ---------~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~i~g~~~~k~~l~~ 304 (441)
.+++.+.+.|......++..-.+-+........+... .... .+.....|.++.. +.+++.+.+
T Consensus 1496 ~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~-~~l~~~l~~ 1574 (2695)
T 4akg_A 1496 TLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNK-TDLVNFIEE 1574 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCH-HHHHHHHHH
Confidence 3333444433322111111111111111111111000 0000 0111223555543 556666665
Q ss_pred HHh---------------cccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchH
Q 013506 305 AVE---------------WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESE 369 (441)
Q Consensus 305 ~~~---------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~ 369 (441)
.+. .++.|..++.|+..+|++|+||+|++||||+|++|++|.++++.++++..+..|+ ..++.
T Consensus 1575 ~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~ 1652 (2695)
T 4akg_A 1575 RFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFD 1652 (2695)
T ss_dssp HHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHH
T ss_pred HHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHH
Confidence 553 4677889999999999999999999999999999999999999999999999888 78899
Q ss_pred HHHHHHHHHHHhc-CCeEEEEecccc
Q 013506 370 ALLRNTFQRARLA-APSIIFFDEADV 394 (441)
Q Consensus 370 ~~~~~~~~~a~~~-~~~vl~iDE~d~ 394 (441)
++++.++.+|+.. .+.|++|+|..-
T Consensus 1653 eDLk~l~~~aG~~~~~~vFL~tD~qi 1678 (2695)
T 4akg_A 1653 MILKKAISDCSLKESRTCLIIDESNI 1678 (2695)
T ss_dssp HHHHHHHHHHHHSCCCEEEEEETTTC
T ss_pred HHHHHHHHHcCCCCCceEEEEecccc
Confidence 9999999999764 567888887754
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=8.9e-28 Score=214.47 Aligned_cols=244 Identities=35% Similarity=0.513 Sum_probs=184.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|++++++.|.+.+.. +..++.+.+++...+.+++|+||||||||++++++++.++.+++.+++..+...+.+
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 86 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG 86 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS
T ss_pred CCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc
Confidence 4458999999999999998765 667888888899999999999999999999999999999999999998887766655
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC-----chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR-----REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTN 170 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~ 170 (441)
.....+..+|..+... .|++|||||+|.+....... .......+..++..++.... ...++++|+++|
T Consensus 87 ~~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~v~vi~ttn 159 (268)
T 2r62_A 87 LGASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS---ENAPVIVLAATN 159 (268)
T ss_dssp SCSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC---SCSCCEEEECBS
T ss_pred hHHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc---CCCCEEEEEecC
Confidence 5444445556555432 47899999999987643111 00011223344444443221 223589999999
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhccc
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSD 250 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~ 250 (441)
.++.+++++.+++||...+.++.|+.++|.++++.++.......+.++..++..+.|++++++..+++.+...+..+.
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~-- 237 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-- 237 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999989999999999999999999888776666678888999999999999999998876553321
Q ss_pred ccccccceeeeHhhHHhhhhhcccc
Q 013506 251 ANECAGVLSVTMEDWRHARSVVGPS 275 (441)
Q Consensus 251 ~~~~~~~~~~~~e~~~~~~~~~~~~ 275 (441)
...++.+++..++....+.
T Consensus 238 ------~~~i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 238 ------QKEVRQQHLKEAVERGIAG 256 (268)
T ss_dssp ------CCSCCHHHHHTSCTTCCCC
T ss_pred ------cCCcCHHHHHHHHHHHhhc
Confidence 2246777777665554443
No 38
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=3.7e-28 Score=246.19 Aligned_cols=228 Identities=36% Similarity=0.631 Sum_probs=192.4
Q ss_pred ccccccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc
Q 013506 11 HNEKWKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH 90 (441)
Q Consensus 11 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~ 90 (441)
++..| ++++|++++|+.|.+++.++..++..+.++++.++.+++|+||||||||++++++++.++.+++.+++.++.
T Consensus 472 ~~v~~---~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 472 PQVTW---EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCSS---CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccccc---cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 34445 899999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCch----hhHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013506 91 KAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRRE----QDVRIASQLFTLMDSNKPSKTSVPHVVVV 166 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~vi 166 (441)
..+.++....+..+|+.+.... |+++||||+|.+......... ...+.+.+|+..++.... ..+++||
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~----p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~----~~~v~vI 620 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST----KKNVFII 620 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHC----SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------CCBCC
T ss_pred hhhcCccHHHHHHHHHHHHhcC----CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc----cCCeEEE
Confidence 9999998889999999887653 899999999999876643322 234566667766665432 2368999
Q ss_pred EEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 013506 167 ASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 167 ~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~ 246 (441)
+|||.++.+|+++.+++||+..++++.|+.+++.+|++.++.......+.++..++..+.||+++++..+++.+...+.+
T Consensus 621 ~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~ 700 (806)
T 1ypw_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIR 700 (806)
T ss_dssp CCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHS
T ss_pred EecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777777888899999999999999999999998887
Q ss_pred hcc
Q 013506 247 RSS 249 (441)
Q Consensus 247 ~~~ 249 (441)
+..
T Consensus 701 ~~~ 703 (806)
T 1ypw_A 701 ESI 703 (806)
T ss_dssp CC-
T ss_pred HHH
Confidence 654
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.91 E-value=8.7e-24 Score=233.32 Aligned_cols=323 Identities=20% Similarity=0.247 Sum_probs=198.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEccCccccccccchHHHHHHHHHHHHh-----------hhh-cCCCe
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVISPHSVHKAHVGESEKALREAFSQASS-----------HAL-SGKPS 118 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~ 118 (441)
.++++||+||||||||++++..+..+ +.+++.++.+.... ...+...+..... .+. .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 46789999999999998887665554 44556666654322 2233333332110 011 24457
Q ss_pred EEEEccccccccCCCCCchhhHHHHHHHHHHH---hcCCCCCCCCCeEEEEEEcCCCC-----ccCHHHhhCCccceEEE
Q 013506 119 VVFIDEIDALCPRRDHRREQDVRIASQLFTLM---DSNKPSKTSVPHVVVVASTNRVD-----AIDPALRRSGRFDAEVE 190 (441)
Q Consensus 119 il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~vi~~~~~~~-----~l~~~l~~~~r~~~~i~ 190 (441)
|+||||+|...++. .+.+...+.+.+++..- +..........++.+|+|+|++. .+++++.| ||. +++
T Consensus 1377 VlFiDDiNmp~~D~-yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-vi~ 1452 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDK-YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-ILL 1452 (3245)
T ss_dssp EEEETTTTCCCCCT-TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-EEE
T ss_pred EEEecccCCCCccc-cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-EEE
Confidence 99999999543322 33445556666665532 22222233456789999999883 68999999 996 799
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC-Cccc--HHHHH-----------HH-------CCCCCHHHHHHHHHHHH--------
Q 013506 191 VTVPTAEERFEILKLYTKKVPLD-ANVD--LEAIA-----------TS-------CNGYVGADLEALCREAT-------- 241 (441)
Q Consensus 191 ~~~p~~~~~~~il~~~~~~~~~~-~~~~--~~~l~-----------~~-------~~g~~~~~i~~l~~~a~-------- 241 (441)
++.|+.+++..|+..++...... .... ...++ .. ..-|+.||+.++++...
T Consensus 1453 i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~~ 1532 (3245)
T 3vkg_A 1453 VDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMDG 1532 (3245)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSSC
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCcccc
Confidence 99999999999987665432211 0100 01111 11 13467777776655433
Q ss_pred -----------HHHHHhcccccccccceeeeHhhHHhhhh-------hcccccc-----cCccc-ccCccccccccCchh
Q 013506 242 -----------MSAVKRSSDANECAGVLSVTMEDWRHARS-------VVGPSIT-----RGVTV-EIPKVTWEDIGGLRD 297 (441)
Q Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-------~~~~~~~-----~~~~~-~~~~~~~~~i~g~~~ 297 (441)
+++.+.+.|.. ++.+|...... ...+... ....+ ......|..+ ..++
T Consensus 1533 ~~~~~lvrLW~HE~~RVF~DRL-------v~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v-~~~~ 1604 (3245)
T 3vkg_A 1533 CTLEGLVRLWAHEALRLFQDRL-------VETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPV-NRSD 1604 (3245)
T ss_dssp CCTTHHHHHHHHHHHHHHTTTC-------SSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CC-CHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccC-CHHH
Confidence 33334333322 33333222211 1111100 00000 1111234444 3455
Q ss_pred HHHHHHHHHh---------------cccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 298 LKKKLQQAVE---------------WPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 298 ~k~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
+++.+.+.+. .++.|..++.|+..+|++|+||+|++||||++++|++|.+.++.++++..+.-|+
T Consensus 1605 l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~ 1684 (3245)
T 3vkg_A 1605 LREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK 1684 (3245)
T ss_dssp HHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC
T ss_pred HHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC
Confidence 6666655543 4667889999999999999999999999999999999999999999999999888
Q ss_pred hccCchHHHHHHHHHHHHh-cCCeEEEEecccc
Q 013506 363 MYVGESEALLRNTFQRARL-AAPSIIFFDEADV 394 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~-~~~~vl~iDE~d~ 394 (441)
..++.++++.++.+|+. +.+.|++|+|..-
T Consensus 1685 --~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi 1715 (3245)
T 3vkg_A 1685 --SSDFDDDLRMLLKRAGCKEEKICFIFDESNV 1715 (3245)
T ss_dssp --HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGC
T ss_pred --HHHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence 78899999999999975 4567888887653
No 40
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.91 E-value=5.1e-24 Score=192.61 Aligned_cols=155 Identities=46% Similarity=0.853 Sum_probs=137.6
Q ss_pred cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
...+...|++++|++.+++.+.+.+.+++.+...+...+..++.+++|+||||||||++|+++|..++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34566789999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+.|.|++++.++.+|..+....|+++||||+|.+.+.|+......++...+++++||+.|+++.....|+|++||
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 999999999999999999988999999999999999887655445566789999999999998766555555544
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=185.07 Aligned_cols=151 Identities=40% Similarity=0.665 Sum_probs=129.8
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCceEEechhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFSLSGAELY 361 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-~~~~~~i~~~~~~ 361 (441)
+.+...|++++|++.+++.+.+.+.+++.+...+.. ...|+.++||+||||||||++|+++|..+ +.+++.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 345678999999999999999999988888777654 35677899999999999999999999999 8899999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC--CCeEEEEeeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--AKVIIYPISFI 437 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~~~~~~~ 437 (441)
++|.|++++.++.+|..+....|+||||||+|.+.+.|+.. ..+...+++++||+.|+++.. .++++|.+||.
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999999999999999999887653 335578999999999999853 44455555553
No 42
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=3.4e-22 Score=182.56 Aligned_cols=152 Identities=39% Similarity=0.674 Sum_probs=127.1
Q ss_pred cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
...+...|++++|++.+++.+.+.+.+++.+...+.. +..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 88 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 88 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHh
Confidence 3456778999999999999999999888777766655 456778999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC-CCC-eEEEEeeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE-QAK-VIIYPISFI 437 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~-~v~~~~~~~ 437 (441)
+.|.|++++.++.+|..+....|+||||||+|.+.+.|+.. ......++.+.||..|++.. ... ++||.+||.
T Consensus 89 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 89 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp TTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999887543 33456899999999999984 333 444445553
No 43
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.7e-22 Score=177.93 Aligned_cols=150 Identities=44% Similarity=0.774 Sum_probs=124.2
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+...|++++|++++++.+.+.+.+++.+...+..+++.++.+++|+|||||||||+++++|..++..++.+++.++.+.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 45678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|.+++++.++.+|+.+....|+++|+||+|.+++.|+... .+...++++.++.+|++.+....++++|++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~t 153 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAAT 153 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeec
Confidence 9999999999999999888899999999999987765421 223568899999999999888777777765
No 44
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=2.4e-21 Score=174.06 Aligned_cols=181 Identities=22% Similarity=0.357 Sum_probs=131.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l 128 (441)
+.+++.++||+||||||||++|+++|+.++.+++.+++..+...+.+.....+...|..+........|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 56678899999999999999999999999999999999999888888888888888888754433556899999999998
Q ss_pred ccCCCCCch---hhHHHHHHHHHHHhcCCC-------CCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHH
Q 013506 129 CPRRDHRRE---QDVRIASQLFTLMDSNKP-------SKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEE 198 (441)
Q Consensus 129 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~-------~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~ 198 (441)
.+....... ....+...|+..++.... ......++++|+|||.++.+++++.|++||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 874432222 344667888888874320 11123468999999999999999998889987665 579999
Q ss_pred HHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHH
Q 013506 199 RFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEA 235 (441)
Q Consensus 199 ~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 235 (441)
|.+|++.++... ..+...++..+.+|++.++..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999877643 345777777777787777653
No 45
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=7e-22 Score=182.37 Aligned_cols=152 Identities=39% Similarity=0.665 Sum_probs=121.7
Q ss_pred cccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 282 VEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 282 ~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
...+...|++++|++.+++.+.+.+.+++.+...+.. +..++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3455678999999999999999999888777776665 556778999999999999999999999999999999999999
Q ss_pred hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC--CCeEEEEeeee
Q 013506 362 SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--AKVIIYPISFI 437 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~v~~~~~~~ 437 (441)
+.|.|++++.++.+|..+....|+||||||+|.+.+.|+.. ......++.++||+.|+++.. ..++||.+||.
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999998899999999999999887643 345678999999999998754 34555555653
No 46
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.87 E-value=1.3e-21 Score=184.94 Aligned_cols=152 Identities=37% Similarity=0.657 Sum_probs=124.6
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|++++|++..++.+.+.+.. +.....+.+++..++.+++|+||||||||++|+++|..++.+++.++++++...|
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 345789999999999999998875 4555667778888888999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCe-EEEEeeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKV-IIYPISFI 437 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-v~~~~~~~ 437 (441)
+|.....++.+|..|....|+||||||+|.+.+.|+....+.+....+.++.||.+||++..... +||.+||.
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999888654334445567889999999998876544 55555553
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=1.9e-21 Score=175.10 Aligned_cols=153 Identities=40% Similarity=0.655 Sum_probs=135.1
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+...|++++|++.+++.+.+++..++.+...+...+..++.+++|+||||||||++|+++|..++.+++.++.+++.+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 34567999999999999999999888888888888888999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|.|+.+..++.+|..+....|+||||||+|.+.++|.....+.+....+.+..+++.++++.....++|++|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 9999999999999999999999999999999998887655555556678899999999988776555555544
No 48
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=1.4e-20 Score=171.49 Aligned_cols=217 Identities=21% Similarity=0.273 Sum_probs=162.2
Q ss_pred cccc-cccchHHHHHHHHHHHHhhccCchHHHhcCCCC---CcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEE
Q 013506 16 KAEE-AIGGNRAAVEALRELITFPLLYSSQAQKLGLKW---PRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVI 84 (441)
Q Consensus 16 ~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~vll~Gp~GtGKT~l~~~l~~~l-------~~~~~~v 84 (441)
..++ +++|++++|+.|.+.+..+. .+..+...|+.. +.+++|+||||||||++++.+++.+ ..+++.+
T Consensus 27 ~~l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 105 (309)
T 3syl_A 27 EELDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSV 105 (309)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred HHHHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 4455 79999999999999887644 355565666543 4579999999999999999999887 3378999
Q ss_pred ccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEE
Q 013506 85 SPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVV 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 164 (441)
++..+...+.+.....+...+..+. +++|||||+|.+...... .......+..|+..++.... +++
T Consensus 106 ~~~~l~~~~~g~~~~~~~~~~~~~~-------~~vl~iDEid~l~~~~~~-~~~~~~~~~~Ll~~l~~~~~------~~~ 171 (309)
T 3syl_A 106 TRDDLVGQYIGHTAPKTKEVLKRAM-------GGVLFIDEAYYLYRPDNE-RDYGQEAIEILLQVMENNRD------DLV 171 (309)
T ss_dssp CGGGTCCSSTTCHHHHHHHHHHHHT-------TSEEEEETGGGSCCCC----CCTHHHHHHHHHHHHHCTT------TCE
T ss_pred cHHHhhhhcccccHHHHHHHHHhcC-------CCEEEEEChhhhccCCCc-ccccHHHHHHHHHHHhcCCC------CEE
Confidence 9999888888887777777776652 679999999998754322 22345778888888886432 467
Q ss_pred EEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCccc-HHHHHHH-------CCCCCHH
Q 013506 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVD-LEAIATS-------CNGYVGA 231 (441)
Q Consensus 165 vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~-~~~l~~~-------~~g~~~~ 231 (441)
+|++++... .++|++.+ ||...+.|++|+.+++.+|++.++.......+.+ +..++.. ....+.+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r 249 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANAR 249 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHH
Confidence 788887643 35789998 9988999999999999999999888765543322 4444444 3334688
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 013506 232 DLEALCREATMSAVKRSS 249 (441)
Q Consensus 232 ~i~~l~~~a~~~~~~~~~ 249 (441)
++.++++.+...+..+..
T Consensus 250 ~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 250 SIRNALDRARLRQANRLF 267 (309)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888876655543
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=6e-21 Score=168.92 Aligned_cols=151 Identities=38% Similarity=0.636 Sum_probs=122.2
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|++++|++.+++.+.+.+.. +.+...+...+..++.+++|+||||||||++|+++|..++.+++.++++++.+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 456789999999999999887764 5555556666777788999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.++.++.++.+|+.+....|+++||||+|.+.+.++....+......+.++.+|+.|+++.....++|++++
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 157 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence 999999999999999888899999999999998776433333344467899999999998766555555543
No 50
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=2.4e-22 Score=192.07 Aligned_cols=176 Identities=23% Similarity=0.324 Sum_probs=123.7
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEccCccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG--AHLTVISPHSVHKAHV 94 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~--~~~~~v~~~~~~~~~~ 94 (441)
.+++++|++++++.+..++... ..+..+++++||+||||||||++|+++++.++ .+++.+++..+...+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSS
T ss_pred chhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhh
Confidence 4589999999999998877431 22455778999999999999999999999998 8999999999998888
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhH--------------------HHHHHHHHHHhcCC
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDV--------------------RIASQLFTLMDSNK 154 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~ 154 (441)
++... +...|..+.. .....|++|||||+|.+.+.......... +....++..++...
T Consensus 107 ~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 107 KKTEV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp CHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhHH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 88776 7778877621 11234899999999999876543211000 01122444444322
Q ss_pred CCCCCCCeEEEEEEcCCCCccCHHHhhCCccce--EEEecCCCH--HHHHHHHH
Q 013506 155 PSKTSVPHVVVVASTNRVDAIDPALRRSGRFDA--EVEVTVPTA--EERFEILK 204 (441)
Q Consensus 155 ~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~--~i~~~~p~~--~~~~~il~ 204 (441)
.. ....++++++||.++.+++++.+++||+. .+.++.|+. ++|.+|++
T Consensus 185 ~~--~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 185 VE--AGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp CC--TTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred CC--CCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 21 12245666889999999999999999986 456677743 55555543
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.85 E-value=3.4e-21 Score=182.96 Aligned_cols=154 Identities=40% Similarity=0.670 Sum_probs=121.3
Q ss_pred cccccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-CCceEEechh
Q 013506 280 VTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-EASFFSLSGA 358 (441)
Q Consensus 280 ~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-~~~~~~i~~~ 358 (441)
.....+...|++++|++.+++.+.+.+.+++.+...+.. +..++.++||+||||||||++|+++|..+ +.+++.++++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~ 202 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 202 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHH
Confidence 344556778999999999999999999887777665543 34567899999999999999999999999 8899999999
Q ss_pred hhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC--CCCeEEEEeee
Q 013506 359 ELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE--QAKVIIYPISF 436 (441)
Q Consensus 359 ~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~--~~~~v~~~~~~ 436 (441)
++.+.|+|+++..++.+|..+....|+||||||+|.+++.|+.. ..+...++++.||+.|+++. ..+++||.+||
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999887653 34557899999999999975 34455555665
Q ss_pred e
Q 013506 437 I 437 (441)
Q Consensus 437 ~ 437 (441)
.
T Consensus 280 ~ 280 (444)
T 2zan_A 280 I 280 (444)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.84 E-value=3.8e-21 Score=203.55 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=111.8
Q ss_pred CccccccccCchhHHHHHHHHHhcccCC----------chhhhh------------------cCCCCCceEEEECCCCCc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKH----------STAFSR------------------LGISPVRGALLHGPPGCS 336 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~----------~~~~~~------------------~~~~~~~~~ll~Gp~GtG 336 (441)
....|.+++++..+|+.+.+.+.|++.+ ...... -|.+.++.++++||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3478999999999999999988887743 112222 124445569999999999
Q ss_pred HHHHHHHHHHHc---CCceEEechhh----hh--------hhccCc----hHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 337 KTTLAKAAAHAA---EASFFSLSGAE----LY--------SMYVGE----SEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 337 KTtla~~la~~~---~~~~~~i~~~~----~~--------~~~~g~----~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
||++|++++... +.+.+-++..+ ++ ++|+++ +|+.++.+|..|+...|+++|+||++.++|
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998765 44444444433 33 567778 899999999999999999999999999999
Q ss_pred cc---CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeee
Q 013506 398 KR---GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIF 438 (441)
Q Consensus 398 ~r---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~ 438 (441)
.+ |..++...+...|+++++|.+|++......|+|+++|-.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEeccc
Confidence 84 333333336788999999999999888888888888854
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=1.2e-20 Score=180.06 Aligned_cols=148 Identities=42% Similarity=0.686 Sum_probs=133.0
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...|.+++|+...++.+.+.+..++.+...+..++..++.++||+||||||||++|+++|..++.+++.++++++.+.|.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 34688999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|+.+..++.+|..|....|++|||||+|.+.+.|+.. .++...++++.||..|++......|+|++||
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 9999999999999999999999999999999887542 3456789999999999998776666666554
No 54
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=165.96 Aligned_cols=150 Identities=39% Similarity=0.635 Sum_probs=110.7
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...|++++|++.+++.+.+.+.. +.+...+...+..++.+++|+||||||||++|+++|..++.+++.++++++.+.|.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35688999999999999988765 55555666677788889999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCC-CcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSST-SITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+.+...++.+|..+....|+||||||+|.+.+.|+....+ .+....+.++.||..+++......++|++|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 9999999999999998889999999999998877542211 1233467899999999987765555555554
No 55
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=7.8e-20 Score=170.04 Aligned_cols=170 Identities=21% Similarity=0.241 Sum_probs=78.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-ccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVGE 96 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~-~~~~~ 96 (441)
+.|+|++.+|+.|..++..++.+...+..+.. .++.+++|+||||||||++++++|+.++.+++.+++..+.. .+.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 36999999999999998776544433333322 25678999999999999999999999999999999988776 47774
Q ss_pred -hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE-cCCCCc
Q 013506 97 -SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS-TNRVDA 174 (441)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~-~~~~~~ 174 (441)
....++.+|..+... +++||++.+.... ......+++..|+..++...... .+ +++ ||.++.
T Consensus 95 d~e~~lr~lf~~a~~~--------~~~De~d~~~~~~--~~~~e~rvl~~LL~~~dg~~~~~----~v--~a~~TN~~~~ 158 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL--------VRQQEIAKNRARA--EDVAEERILDALLPPAKNQWGEV----EN--HDSHSSTRQA 158 (444)
T ss_dssp CTHHHHHHHHHHHHHH--------HHHHHHHSCC----------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc--------chhhhhhhhhccc--hhhHHHHHHHHHHHHhhcccccc----cc--ccccccCHHH
Confidence 677888888776543 3488888764332 22334577888888887654321 22 444 999999
Q ss_pred cCHHHhhCCccceEEEecCCCHH-HHHHHHH
Q 013506 175 IDPALRRSGRFDAEVEVTVPTAE-ERFEILK 204 (441)
Q Consensus 175 l~~~l~~~~r~~~~i~~~~p~~~-~~~~il~ 204 (441)
+++++++++||+..++++.|+.. .+.+|+.
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -------------------------------
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 99999999999999999999987 6666654
No 56
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=171.50 Aligned_cols=151 Identities=39% Similarity=0.575 Sum_probs=113.6
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+...|++++|.+.+++.+.+++..+..+...+...+ .++.++||+||||||||++|+++|..++.+++.++++++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 44566799999999999999999887766655555544 45679999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC--CC-eEEEEeeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--AK-VIIYPISFI 437 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~-~v~~~~~~~ 437 (441)
.|.|+++..++.+|..+....++||||||||.+++.|... ......++.+.||..|++... .. ++||.+||.
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 9999999999999999999999999999999999876542 334568999999999998765 23 444555553
No 57
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=1.4e-19 Score=163.82 Aligned_cols=149 Identities=40% Similarity=0.619 Sum_probs=121.1
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+...|++++|.+.+++.+.+.+..+..+...+.... .++.+++|+||||||||++|+++|..++.+++.++++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 3456789999999999999999887766655554443 456799999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCC----CeEEEEeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA----KVIIYPISF 436 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~v~~~~~~ 436 (441)
|.++.++.++.+|..+....|++|||||+|.+.+.+.... .....++.+.||..+++.... .+++|.+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 9999999999999999989999999999999998775422 334578899999999987653 345555555
No 58
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=167.77 Aligned_cols=149 Identities=35% Similarity=0.653 Sum_probs=120.5
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|++++|++.+++.+.+.+.+++.+...+.+.. .++.++||+||||||||++|+++|..++.+++.++++++.+.|
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 355789999999999999999887766665554443 5567899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC---CCeEEEEeeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ---AKVIIYPISFI 437 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~v~~~~~~~ 437 (441)
.|+.+..++.+|..+....++||||||+|.+.+.|+.. ......++++.||..|++... ..++||.+||.
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 99999999999999998899999999999999877542 344567899999999998653 34455555553
No 59
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.81 E-value=1.1e-19 Score=172.69 Aligned_cols=151 Identities=39% Similarity=0.669 Sum_probs=127.1
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|+++.|++..+..+.+.+.. +.....+..++...+.+++|+||||||||++|+++|..++.+++.++++++.+.|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 456789999999999999988765 4455566777888888899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
++.....++.+|+.+....|+++||||+|.+.+.|+....+......+.++.||++|++.+....++++|++
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 999999999999998777889999999999988776432223344568899999999998876666666654
No 60
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=2.4e-17 Score=152.03 Aligned_cols=214 Identities=19% Similarity=0.219 Sum_probs=152.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
..+++++|++.+++.+..++..... .-.+..+++|+||||||||++|+.++..++.+++.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 5679999999999999998865311 112456899999999999999999999999999999886542
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC------------CCCCCeE
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS------------KTSVPHV 163 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~ 163 (441)
....+...+.. ...+++|||||++.+. ...+..|+..++..... ....+++
T Consensus 93 -~~~~~~~~~~~------~~~~~vl~lDEi~~l~----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 93 -KSGDLAAILTN------LSEGDILFIDEIHRLS----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp -SHHHHHHHHHT------CCTTCEEEEETGGGCC----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred -chhHHHHHHHh------ccCCCEEEEechhhcC----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 12222222221 2357899999999873 35677777777664311 1122358
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
.+|++||....+++++.+ ||...+.+++|+.+++.+++...+.......+ ..++.++..+. .+.+.+.++++.+..
T Consensus 156 ~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRVRD 232 (338)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 999999999999999999 99889999999999999999988877654432 23566666444 467788887777654
Q ss_pred HHHHhcccccccccceeeeHhhHHhhhh
Q 013506 243 SAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
.+.... ...++.+++.....
T Consensus 233 ~a~~~~--------~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 233 FADVND--------EEIITEKRANEALN 252 (338)
T ss_dssp HHHHTT--------CSEECHHHHHHHHH
T ss_pred HHHhhc--------CCccCHHHHHHHHH
Confidence 443221 12356666655544
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=7.3e-18 Score=157.45 Aligned_cols=220 Identities=21% Similarity=0.273 Sum_probs=149.5
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccCccccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHKAHV 94 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~--~~~~v~~~~~~~~~~ 94 (441)
.+++++|++.+++.+..+.... ..+..+++++||+||||||||++++.+++.++. +++.+++..+.....
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred chhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 3789999999999877655331 113345689999999999999999999999975 667776554332221
Q ss_pred cc-------------------------------------------------hHHHHHHHHHHHHhhhh-cC----CCeEE
Q 013506 95 GE-------------------------------------------------SEKALREAFSQASSHAL-SG----KPSVV 120 (441)
Q Consensus 95 ~~-------------------------------------------------~~~~~~~~~~~~~~~~~-~~----~~~il 120 (441)
+. ....+...+........ .+ .|+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 11 12233333333322111 11 25799
Q ss_pred EEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc-----------CCCCccCHHHhhCCccceEE
Q 013506 121 FIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST-----------NRVDAIDPALRRSGRFDAEV 189 (441)
Q Consensus 121 ~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~-----------~~~~~l~~~l~~~~r~~~~i 189 (441)
||||+|.+. ......|+..++.... .++++++. |.+..+++.+.+ ||. .+
T Consensus 194 ~IDEi~~l~----------~~~~~~L~~~le~~~~------~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~-~i 254 (368)
T 3uk6_A 194 FIDEVHMLD----------IESFSFLNRALESDMA------PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL-IV 254 (368)
T ss_dssp EEESGGGSB----------HHHHHHHHHHTTCTTC------CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE-EE
T ss_pred EEhhccccC----------hHHHHHHHHHhhCcCC------CeeeeecccceeeeeccCCCCcccCCHHHHh--hcc-EE
Confidence 999999873 3566777777755322 34555544 346788999999 997 48
Q ss_pred EecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhh
Q 013506 190 EVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHA 268 (441)
Q Consensus 190 ~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 268 (441)
.+++|+.+++.++++..+.......+ ..++.++..+.+.+.+.+..+++.+...+..+.. ..++.+++..+
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~--------~~It~~~v~~a 326 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG--------TEVQVDDIKRV 326 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC--------SSBCHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--------CCCCHHHHHHH
Confidence 99999999999999988776554433 3367777777756889999999988777655432 34777777776
Q ss_pred hhh
Q 013506 269 RSV 271 (441)
Q Consensus 269 ~~~ 271 (441)
+..
T Consensus 327 ~~~ 329 (368)
T 3uk6_A 327 YSL 329 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 62
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.79 E-value=1.1e-18 Score=154.02 Aligned_cols=153 Identities=39% Similarity=0.666 Sum_probs=122.5
Q ss_pred ccCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh
Q 013506 283 EIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS 362 (441)
Q Consensus 283 ~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~ 362 (441)
..+...|++++|.+..+..+.+.... ......+..+++..+.+++|+|||||||||++++++..++..++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34567899999999999999887664 34455666777777788999999999999999999999999999999999988
Q ss_pred hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 363 MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+.+...+.++.+|+.+....|+++|+||+|.+.+.|+...........+.++.++..|++.+....++++|++
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence 88888889999999999877889999999999987765322223344578899999999998887777776664
No 63
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.79 E-value=2.9e-19 Score=160.48 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=85.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHH----HhcCCeEEEEeccccc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRA----RLAAPSIIFFDEADVV 395 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a----~~~~~~vl~iDE~d~~ 395 (441)
+..++.++||+||||||||++|+++|..++.+++.++++++.+.|+|+++..++.+|..| +...|+||||||+|++
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 456677999999999999999999999999999999999999999999999999999999 4678899999999999
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHhcCCC-----------C-CCeEEEEeeee
Q 013506 396 GAKRGGSSSTSITVGERLLSTLLTEMDGLE-----------Q-AKVIIYPISFI 437 (441)
Q Consensus 396 ~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~-~~~v~~~~~~~ 437 (441)
++.+++.. .......++.++|++.||+.. . ..++||++||-
T Consensus 112 ~~~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 112 AGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred cCCCCCCc-cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 98655422 222345678899999998543 2 34566666663
No 64
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=4.3e-20 Score=164.61 Aligned_cols=153 Identities=36% Similarity=0.615 Sum_probs=120.2
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
.+...|++++|.+.+++.+.+.+.. +.+...+..++..++.+++|+||||||||++|+++|..++.+++.++++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 3456788999999999999988765 556666777788888889999999999999999999999999999999999998
Q ss_pred ccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCC-CCCcchhhHHHHHHHHHhcCCCCC--CeEEEEeeee
Q 013506 364 YVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSS-STSITVGERLLSTLLTEMDGLEQA--KVIIYPISFI 437 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~-~~~~~~~~~~~~~ll~~l~~~~~~--~~v~~~~~~~ 437 (441)
|.|.....++.+|..+....|+||||||+|.+.+.|..++ .+.+....++++.||+.|++.... .+++|.+||.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNR 160 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSC
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCC
Confidence 9888888888999999888899999999999998764321 112233456788999999987643 2455555553
No 65
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=1.3e-17 Score=151.95 Aligned_cols=249 Identities=20% Similarity=0.259 Sum_probs=153.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhc-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-ccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKL-GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK-AHVGE 96 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~-~~~~~ 96 (441)
+.++|++++++.|...+..+.......... .-..+.+++|+||||||||++++.+++.++.+++.+++..+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 459999999999998886532221111100 0124578999999999999999999999999999999887764 33332
Q ss_pred h-HHHHHHHHHHHHhhhh-cCCCeEEEEccccccccCCCCCch--hhHHHHHHHHHHHhcCCCC----CCCCCeEEEEEE
Q 013506 97 S-EKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRRE--QDVRIASQLFTLMDSNKPS----KTSVPHVVVVAS 168 (441)
Q Consensus 97 ~-~~~~~~~~~~~~~~~~-~~~~~il~iDe~~~l~~~~~~~~~--~~~~~~~~l~~~~~~~~~~----~~~~~~~~vi~~ 168 (441)
. ...+..++........ ...+++|||||+|.+.+....... .....+..|+..++..... .....++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 1 2234444432110000 012679999999999765532211 1223466777777753100 001124677777
Q ss_pred ----cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHH-----------hccCCCC---CcccHHHHHHHCC----
Q 013506 169 ----TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLY-----------TKKVPLD---ANVDLEAIATSCN---- 226 (441)
Q Consensus 169 ----~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~-----------~~~~~~~---~~~~~~~l~~~~~---- 226 (441)
++.+..+++++.+ ||...+.+++|+.+++.+|++.. +...... .+..++.++..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4567789999999 99888999999999999999831 1112211 1222555555542
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 227 ---GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 227 ---g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
..+.+.+..+++.+........... ......++.+++..+...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASDM--NGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGGC--TTCEEEECHHHHHHHTCS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCccc--cCCEEEEeeHHHHHHHHh
Confidence 4677888888887765543222211 112234777777766553
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.75 E-value=1.2e-17 Score=149.28 Aligned_cols=151 Identities=39% Similarity=0.669 Sum_probs=121.3
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhc
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMY 364 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~ 364 (441)
+...|++++|.+.+++.+.+.... ......+..+++..+.+++|+|||||||||++++++..++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 567899999999999999887764 3444566677777777899999999999999999999999999999999998888
Q ss_pred cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 365 VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 365 ~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+.....++.+|+.+....|+++|+||+|.+.+.++...........+.++.++.+|++.+....+++++++
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence 888888999999999877889999999999887664321122334578899999999998877666666654
No 67
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.74 E-value=1.8e-18 Score=165.26 Aligned_cols=143 Identities=24% Similarity=0.309 Sum_probs=109.3
Q ss_pred CccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC--CceEEechhhhhh
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE--ASFFSLSGAELYS 362 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~--~~~~~i~~~~~~~ 362 (441)
+...|++++|++.+++.+..++... ..+..++.++||+||||||||++|+++|..++ .+++.++++++++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4456789999999999888776531 22556778999999999999999999999999 8999999999999
Q ss_pred hccCchHHHHHHHHHHH---HhcCCeEEEEecccccccccCCCCCCC----------------cchhhHHHHHHHHHhc-
Q 013506 363 MYVGESEALLRNTFQRA---RLAAPSIIFFDEADVVGAKRGGSSSTS----------------ITVGERLLSTLLTEMD- 422 (441)
Q Consensus 363 ~~~g~~~~~~~~~~~~a---~~~~~~vl~iDE~d~~~~~r~~~~~~~----------------~~~~~~~~~~ll~~l~- 422 (441)
+|+|+++. ++++|+.| +...|+||||||+|++++.|+....+. .+...++.++++..|+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999998 99999999 778899999999999999987542211 1111244456777775
Q ss_pred -CCCCCCeEEEEeee
Q 013506 423 -GLEQAKVIIYPISF 436 (441)
Q Consensus 423 -~~~~~~~v~~~~~~ 436 (441)
++...++|+|+|||
T Consensus 183 ~~~~~~~~v~i~att 197 (456)
T 2c9o_A 183 ERVEAGDVIYIEANS 197 (456)
T ss_dssp TTCCTTEEEEEETTT
T ss_pred ccCCCCCEEEEEcCC
Confidence 45566667776665
No 68
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=1.8e-17 Score=161.05 Aligned_cols=229 Identities=23% Similarity=0.253 Sum_probs=141.5
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-------
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK------- 91 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~------- 91 (441)
++++|++++++.+.+.+...... ..+ ++.+++|+||||||||++++++++.++.++..+++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 45999999999998876442211 112 5779999999999999999999999999999988765432
Q ss_pred --ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC---------CCCC
Q 013506 92 --AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS---------KTSV 160 (441)
Q Consensus 92 --~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~ 160 (441)
.+.+.....+...|..+. ....++||||++.+.+... ...+..|+..++..... ....
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~-----~~~~vl~lDEid~l~~~~~------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAG-----KLNPVFLLDEIDKMSSDFR------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ----------CHHHHHHTTC-----SSSEEEEEEESSSCC---------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred HHHHhccCchHHHHHHHHhh-----ccCCEEEEhhhhhhhhhhc------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 122222222333333221 1245999999999865321 12345566666532211 1112
Q ss_pred CeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhc-----cCCCC---C---cccHHHHHH-HCCCC
Q 013506 161 PHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTK-----KVPLD---A---NVDLEAIAT-SCNGY 228 (441)
Q Consensus 161 ~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~-----~~~~~---~---~~~~~~l~~-~~~g~ 228 (441)
.++++|+|+|.++.+++++++ ||. ++.++.|+.+++.+|+..++. ..... . +..+..++. .+...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 468999999999999999999 995 799999999999999987652 22221 1 122445444 33345
Q ss_pred CHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhh
Q 013506 229 VGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 229 ~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
+.+.+++.++.++..+....... ......++.+++...+.
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~--~~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAE--ERKRITVTEKNLQDFIG 339 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTT--CCSCCEECTTTTHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHHHhc--CCcceecCHHHHHHHhC
Confidence 66777777666665544332221 12345677777776654
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=5.1e-17 Score=144.83 Aligned_cols=206 Identities=19% Similarity=0.204 Sum_probs=132.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc-cccccch
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH-KAHVGES 97 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~-~~~~~~~ 97 (441)
+.++|.....+.+....... .......+..++.++||+||||||||++|++++..++.+++.+++.+.. .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 56888877766666532110 1123333446678999999999999999999999999999988765422 1111122
Q ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCH
Q 013506 98 EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDP 177 (441)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~ 177 (441)
...+...+..+. ..++++|||||+|.+..............+..+...++.... ...++++|+++|.++.+++
T Consensus 110 ~~~~~~~~~~~~----~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~---~~~~~~ii~ttn~~~~l~~ 182 (272)
T 1d2n_A 110 CQAMKKIFDDAY----KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP---QGRKLLIIGTTSRKDVLQE 182 (272)
T ss_dssp HHHHHHHHHHHH----TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS---TTCEEEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHH----hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC---CCCCEEEEEecCChhhcch
Confidence 234455555443 234789999999998665433333344566666666654321 2236889999999888877
Q ss_pred -HHhhCCccceEEEecCCCH-HHHHHHHHHHhccCCCCCcccHHHHHHHCCCC----CHHHHHHHHHHH
Q 013506 178 -ALRRSGRFDAEVEVTVPTA-EERFEILKLYTKKVPLDANVDLEAIATSCNGY----VGADLEALCREA 240 (441)
Q Consensus 178 -~l~~~~r~~~~i~~~~p~~-~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~----~~~~i~~l~~~a 240 (441)
.+.+ ||...+.+|+++. ++..+++... .. ..+..+..++..+.|+ +.+.+.++++.+
T Consensus 183 ~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~---~~-~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 183 MEMLN--AFSTTIHVPNIATGEQLLEALELL---GN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp TTCTT--TSSEEEECCCEEEHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred hhhhc--ccceEEcCCCccHHHHHHHHHHhc---CC-CCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 5565 9988889988776 5555555542 11 2334577778887775 455665555544
No 70
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=8.4e-17 Score=152.10 Aligned_cols=208 Identities=19% Similarity=0.229 Sum_probs=142.6
Q ss_pred cccccccchHHHH---HHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc
Q 013506 16 KAEEAIGGNRAAV---EALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA 92 (441)
Q Consensus 16 ~~~~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~ 92 (441)
.++++++|++.++ ..|...+... ...+++|+||||||||++++.+++.++.+++.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 6789999999999 7777776541 22689999999999999999999999999998876432
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc--C
Q 013506 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST--N 170 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~--~ 170 (441)
....+...+..+......+++.+|||||+|.+.. ..+..|+..++.. .+++|+++ |
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~----------~~q~~LL~~le~~--------~v~lI~att~n 144 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK----------SQQDAFLPHIEDG--------TITFIGATTEN 144 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC----------------CCHHHHHTT--------SCEEEEEESSC
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH----------HHHHHHHHHHhcC--------ceEEEecCCCC
Confidence 2334555565555444456789999999998832 3455677777752 24556555 4
Q ss_pred CCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC-------CC-CcccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 171 RVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP-------LD-ANVDLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 171 ~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~-------~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
+...+++++.+ |+. ++.+++|+.+++..++...+.... .. .+..++.++..+. .+.+.+.++++.+..
T Consensus 145 ~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~-Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 145 PSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVN-GDARRALNTLEMMAD 220 (447)
T ss_dssp GGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred cccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Confidence 45688999999 886 788999999999999998877632 11 1222666777755 456777777776654
Q ss_pred HHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 243 SAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.+... ..+...++.+++......
T Consensus 221 ~a~~~------~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 221 MAEVD------DSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HSCBC------TTSCEECCHHHHHHHHTC
T ss_pred hcccc------cCCCCccCHHHHHHHHhh
Confidence 33110 012235777777766553
No 71
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=1e-17 Score=155.71 Aligned_cols=228 Identities=19% Similarity=0.285 Sum_probs=144.2
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHh-cCC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc-cccc
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQK-LGL-KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-HVGE 96 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~-~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~-~~~~ 96 (441)
.++|++.+++.|...+............ ... .++.+++|+||||||||++|+++++.++.+++.+++..+... +.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999999988543221111000 011 256799999999999999999999999999999998876543 3333
Q ss_pred h-HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCc----hhhHHHHHHHHHHHhcCCC-------C--------
Q 013506 97 S-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRR----EQDVRIASQLFTLMDSNKP-------S-------- 156 (441)
Q Consensus 97 ~-~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~----~~~~~~~~~l~~~~~~~~~-------~-------- 156 (441)
. ...+...+...........+++|||||+|.+.+...... .....++..|+..++.... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 2 233444544431111112368999999999876643221 1122478888888883210 0
Q ss_pred CCCCCeEEEEEEcCCC----------Cc-----------------------------------cCHHHhhCCccceEEEe
Q 013506 157 KTSVPHVVVVASTNRV----------DA-----------------------------------IDPALRRSGRFDAEVEV 191 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~----------~~-----------------------------------l~~~l~~~~r~~~~i~~ 191 (441)
.....++++|++++.. .. +.|.+.+ ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 0011244555555532 11 6788888 99988999
Q ss_pred cCCCHHHHHHHHHH----Hhc-------cCCCCCcc---cHHHHHH--HCCCCCHHHHHHHHHHHHHHHHHhcc
Q 013506 192 TVPTAEERFEILKL----YTK-------KVPLDANV---DLEAIAT--SCNGYVGADLEALCREATMSAVKRSS 249 (441)
Q Consensus 192 ~~p~~~~~~~il~~----~~~-------~~~~~~~~---~~~~l~~--~~~g~~~~~i~~l~~~a~~~~~~~~~ 249 (441)
++|+.+++.+|+.. +.. ........ .++.++. ....+..|.++++++.+....+.+..
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999998875 211 11221111 2455554 23456678999999998887776554
No 72
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=2.4e-16 Score=144.45 Aligned_cols=195 Identities=23% Similarity=0.278 Sum_probs=138.4
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
...+++++|.+..++.+.+.+.... .. -..+.+++|+||||||||++++.++..++.+++.+++..+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------AR-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------HH-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------cc-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3567999999999999998875421 00 124578999999999999999999999999999888766432
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----C---C----CCCe
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----K---T----SVPH 162 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~---~----~~~~ 162 (441)
...+...+.. ....+++|||||++.+. ...+..++..++..... . . ..++
T Consensus 77 ---~~~l~~~l~~-----~~~~~~~l~lDEi~~l~----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ---PGDLAAILAN-----SLEEGDILFIDEIHRLS----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---HHHHHHHHTT-----TCCTTCEEEETTTTSCC----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---hHHHHHHHHH-----hccCCCEEEEECCcccc----------cchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1222222221 12357899999999873 24456666666643200 0 0 1135
Q ss_pred EEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+.+|+++|.+..+++.+.+ ||...+.+++|+.+++.+++..++.......+ ..++.++..+.| +++.+..+++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 7899999999999999988 99779999999999999999988876554433 236777777754 5677777766553
No 73
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.70 E-value=2.5e-15 Score=129.91 Aligned_cols=187 Identities=19% Similarity=0.204 Sum_probs=127.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~ 90 (441)
..+++++|.++.++.+.+++... ...+++|+||+|||||++++.+++.+ ...++.+++....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 45689999999999999987541 23459999999999999999999876 2346666654322
Q ss_pred cccccchHHHHHHHHHHHHhh--hhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 91 KAHVGESEKALREAFSQASSH--ALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
. ...+...+...... ....++.+|+|||++.+.+ .....+...++... .++.+|++
T Consensus 81 ~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~----------~~~~~l~~~l~~~~------~~~~~i~~ 138 (226)
T 2chg_A 81 G------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA----------DAQAALRRTMEMYS------KSCRFILS 138 (226)
T ss_dssp C------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH----------HHHHHHHHHHHHTT------TTEEEEEE
T ss_pred C------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH----------HHHHHHHHHHHhcC------CCCeEEEE
Confidence 1 11222222222211 1124578999999998732 34556666666532 24678888
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
++.+..+++.+.+ |+. .+.+++|+.++..+++...+.......+ ..++.++..+.| +.+.+.++++.+.
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 8998899999998 886 8999999999999999987765444322 235666666654 5565555555544
No 74
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=2.2e-15 Score=132.34 Aligned_cols=188 Identities=18% Similarity=0.233 Sum_probs=131.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE--------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL-------------- 81 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~-------------- 81 (441)
..+++++|.+..++.|.+++... ..+..++|+||+|+|||++++.+++.+....
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 55689999999999999887541 2345899999999999999999998874321
Q ss_pred ----------EEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 82 ----------TVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 82 ----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
+.++... ......+..++.........+++.+|+|||++.+ +......++..++
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l----------~~~~~~~l~~~l~ 151 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE 151 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS----------CHHHHHHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc----------cHHHHHHHHHHHh
Confidence 1111110 1122233444433322222345789999999986 2345667777776
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~ 230 (441)
... .++.+|.+++.+..+++.+.+ |+ ..+.+++++.++..+++...+.......+ ..++.++..+.| ++
T Consensus 152 ~~~------~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 152 EPP------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp SCC------TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred cCC------CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 532 257888888888889999888 76 58999999999999999988766544322 336778888866 78
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+.+..+++.+.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777664
No 75
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.69 E-value=1.8e-16 Score=144.38 Aligned_cols=209 Identities=16% Similarity=0.225 Sum_probs=138.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~ 95 (441)
++++|++.+++.+...+....... .-.-.+..+++|+||||||||++|+++++.+ +.+++.+++..+.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~- 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA- 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH-
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc-
Confidence 468999999999999885421100 0011234689999999999999999999987 44588888766543210
Q ss_pred chHHHH-----------HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCC
Q 013506 96 ESEKAL-----------REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTS 159 (441)
Q Consensus 96 ~~~~~~-----------~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 159 (441)
....+ ...+..... ...+++|||||++.+ +...+..|+..++..... ...
T Consensus 92 -~~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l----------~~~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 92 -VSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKA----------HPDVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp -HHHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEECTTSCEEE
T ss_pred -HHHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhc----------CHHHHHHHHHHHhcCEEEcCCCCEEE
Confidence 00000 011111111 123589999999987 336677888887753311 112
Q ss_pred CCeEEEEEEcCC--------------------------CCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC---
Q 013506 160 VPHVVVVASTNR--------------------------VDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV--- 210 (441)
Q Consensus 160 ~~~~~vi~~~~~--------------------------~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~--- 210 (441)
..++++|+++|. ...+++.+.+ ||+..+.+++|+.+++..|+..++...
T Consensus 158 ~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~ 235 (311)
T 4fcw_A 158 FRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRAR 235 (311)
T ss_dssp CTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHH
T ss_pred CCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 235679999998 4467888888 998899999999999999998766542
Q ss_pred ----CCCC---cccHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHhc
Q 013506 211 ----PLDA---NVDLEAIATSCN--GYVGADLEALCREATMSAVKRS 248 (441)
Q Consensus 211 ----~~~~---~~~~~~l~~~~~--g~~~~~i~~l~~~a~~~~~~~~ 248 (441)
.... +..++.++.... ..+.++++++++.+...+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 236 LAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 1111 122566666655 5778899999888776655443
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.69 E-value=5.8e-16 Score=144.64 Aligned_cols=248 Identities=16% Similarity=0.200 Sum_probs=144.7
Q ss_pred cccc-cccchHHHHHHHHHHHHhhccCchHHH-----------------hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 16 KAEE-AIGGNRAAVEALRELITFPLLYSSQAQ-----------------KLGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 16 ~~~~-~i~G~~~~~~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
..|+ .++|++.+|+.|..++..++...+... .-...++.+++|+||||||||++|+.+++.+
T Consensus 17 ~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 17 AVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3344 489999999999988853322211100 0112356789999999999999999999999
Q ss_pred CCcEEEEccCcccc-ccccch-HHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCC----chhhHHHHHHHHHHHh
Q 013506 78 GAHLTVISPHSVHK-AHVGES-EKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHR----REQDVRIASQLFTLMD 151 (441)
Q Consensus 78 ~~~~~~v~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~----~~~~~~~~~~l~~~~~ 151 (441)
+.+++.+++..+.. .+.+.. ...+...+...........+++|||||++.+....... .......+..|+..++
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 97 DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 99999998877642 222221 22333333322111112247899999999987652211 0111236788888887
Q ss_pred cCCCC-------C--------CCCCeEEEEEEcCC-----------------------------------------CCcc
Q 013506 152 SNKPS-------K--------TSVPHVVVVASTNR-----------------------------------------VDAI 175 (441)
Q Consensus 152 ~~~~~-------~--------~~~~~~~vi~~~~~-----------------------------------------~~~l 175 (441)
..... . ....++++|+++|. ...+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTC
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCC
Confidence 53100 0 00124566766652 1135
Q ss_pred CHHHhhCCccceEEEecCCCHHHHHHHHHH----Hhc-------cCCCCC---cccHHHHHHHCC--CCCHHHHHHHHHH
Q 013506 176 DPALRRSGRFDAEVEVTVPTAEERFEILKL----YTK-------KVPLDA---NVDLEAIATSCN--GYVGADLEALCRE 239 (441)
Q Consensus 176 ~~~l~~~~r~~~~i~~~~p~~~~~~~il~~----~~~-------~~~~~~---~~~~~~l~~~~~--g~~~~~i~~l~~~ 239 (441)
.+.+.+ |++.++.|++++.++..+|+.. ++. ...... +..++.++.... ..+.+.+.++++.
T Consensus 257 ~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 257 IPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp CHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred ChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 677887 8988899999999999998862 111 111111 112455555533 3567899999988
Q ss_pred HHHHHHHhcccccccccceeeeHhhHHh
Q 013506 240 ATMSAVKRSSDANECAGVLSVTMEDWRH 267 (441)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~e~~~~ 267 (441)
+...++.+.... ......++.+++..
T Consensus 335 ~~~~~~~~~~~~--~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 335 FCLDIMFDLPKL--KGSEVRITKDCVLK 360 (376)
T ss_dssp HHHHHHHTGGGG--TTSEEEECHHHHTT
T ss_pred HHHHHHhhccCC--CCCEEEEeHHHhcC
Confidence 887776654432 11234566666654
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=1.5e-16 Score=134.36 Aligned_cols=159 Identities=21% Similarity=0.339 Sum_probs=108.6
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++.+++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred ccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 4578999999999998887643 245789999999999999999999886 56777777
Q ss_pred cCcccc--ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVHK--AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
+..+.. ...+.....+..++..... ...+.+|+|||+|.+.+...... .......+...++.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~l~~~~~~~--------~~ 152 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADG--AMDAGNMLKPALARG--------EL 152 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT--------CCCCHHHHHHHHHTT--------SC
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcccc--hHHHHHHHHHhhccC--------Ce
Confidence 665442 2233334445555544332 24578999999999865432111 111233334444332 35
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHH
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEIL 203 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il 203 (441)
.+|++++.+. .+++++.+ ||. .+.+++|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 6777777665 67899998 997 7999999999998764
No 78
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=9.6e-16 Score=140.33 Aligned_cols=177 Identities=19% Similarity=0.283 Sum_probs=125.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccccccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~ 95 (441)
.++++++|++++++.|.+++.. -..++.+|++||||||||++++++++.++.+++++++....
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 6789999999999999998853 12446788889999999999999999999999999876532
Q ss_pred chHHHHHHHHHHHH-hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCc
Q 013506 96 ESEKALREAFSQAS-SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDA 174 (441)
Q Consensus 96 ~~~~~~~~~~~~~~-~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 174 (441)
...+...+.... .....+.+.++||||+|.+.. ......|+..++... .++.+|+++|.+..
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~---------~~~~~~L~~~le~~~------~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL---------AESQRHLRSFMEAYS------SNCSIIITANNIDG 148 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---------HHHHHHHHHHHHHHG------GGCEEEEEESSGGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---------HHHHHHHHHHHHhCC------CCcEEEEEeCCccc
Confidence 223333333322 222233578999999998830 345666777776532 14688889999999
Q ss_pred cCHHHhhCCccceEEEecCCCHHHHHHHHHHH-------hccCCCCC-c-ccHHHHHHHCCCCC
Q 013506 175 IDPALRRSGRFDAEVEVTVPTAEERFEILKLY-------TKKVPLDA-N-VDLEAIATSCNGYV 229 (441)
Q Consensus 175 l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~-------~~~~~~~~-~-~~~~~l~~~~~g~~ 229 (441)
+++++.+ ||. .+.|++|+.+++.+++..+ +....... + ..+..++..+.|..
T Consensus 149 l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~ 209 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209 (324)
T ss_dssp SCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT
T ss_pred cCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH
Confidence 9999999 885 7999999999876665433 22223332 2 34667777766543
No 79
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-15 Score=136.38 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=115.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG----------AHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~----------~~~~~v~ 85 (441)
..-+-+.|.|+..+.|..++...+. -..+.+++|+||||||||++++.+++++. ..+++++
T Consensus 17 ~~~~~L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 17 QKRELLKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 3334488999999998887754221 24678999999999999999999999882 3567888
Q ss_pred cCcccccc----------------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 86 PHSVHKAH----------------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 86 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
+....+.. .+.....+...|.... .....+.|+++||+|.+. ..+++..++++
T Consensus 88 c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~---------~q~~L~~l~~~ 156 (318)
T 3te6_A 88 ALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL---------SEKILQYFEKW 156 (318)
T ss_dssp TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC---------CTHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh---------cchHHHHHHhc
Confidence 76543321 1122334555554421 113457899999999986 12456666665
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCCc----cCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccC
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVDA----IDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKV 210 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~~----l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~ 210 (441)
.... ..++.+|+++|..+. +++++.+ ||. ..+.|++|+.++..+|++..+...
T Consensus 157 ~~~~------~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 157 ISSK------NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHCS------SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cccc------CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 4321 225889999988753 4556677 775 579999999999999999877653
No 80
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=4.5e-17 Score=151.36 Aligned_cols=133 Identities=28% Similarity=0.326 Sum_probs=98.1
Q ss_pred ccCchhHHHHHHHHHhcccCCchhhhh--cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh-ccCch
Q 013506 292 IGGLRDLKKKLQQAVEWPIKHSTAFSR--LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM-YVGES 368 (441)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~-~~g~~ 368 (441)
+.|++.+++.+...+............ ....++.++||+||||||||++|+++|..++.+++.++++++... |+|+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 578888888887776422211111000 011256789999999999999999999999999999999998754 77776
Q ss_pred -HHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 369 -EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 369 -~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
...++.+|..+ ....++||||||+|++.+.|.+.+.+.+....++.+.||+.||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 55677777765 345577999999999999887665555555667999999999953
No 81
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.67 E-value=2.3e-15 Score=137.66 Aligned_cols=195 Identities=21% Similarity=0.303 Sum_probs=125.2
Q ss_pred ccccccc-c--hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcc
Q 013506 16 KAEEAIG-G--NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSV 89 (441)
Q Consensus 16 ~~~~~i~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~ 89 (441)
.+|++++ | +......+..++..+ -..+.+++|+||||||||++++.+++.+ +.+++++++..+
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4678876 4 555566666655432 1245789999999999999999999988 788999987665
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc
Q 013506 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~ 169 (441)
...............|.... .++++|||||++.+.... .....++..++..... ...++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-----~~~~vL~iDEi~~l~~~~--------~~~~~l~~~l~~~~~~----~~~iii~~~ 139 (324)
T 1l8q_A 77 AQAMVEHLKKGTINEFRNMY-----KSVDLLLLDDVQFLSGKE--------RTQIEFFHIFNTLYLL----EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHTCHHHHHHHH-----HTCSEEEEECGGGGTTCH--------HHHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred HHHHHHHHHcCcHHHHHHHh-----cCCCEEEEcCcccccCCh--------HHHHHHHHHHHHHHHC----CCeEEEEec
Confidence 33222211111111121111 137899999999874311 2233344433321111 125666666
Q ss_pred CCCC---ccCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 013506 170 NRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 170 ~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
+.+. .+++++.+ ||. ..+.+++ +.+++.+++...+.......+ ..++.++..+ .+.+.+..++..+...
T Consensus 140 ~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp SCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 6665 67899998 885 6799999 999999999998876554433 2367778777 5677777777766544
No 82
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=5.9e-15 Score=135.37 Aligned_cols=186 Identities=21% Similarity=0.248 Sum_probs=127.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~~ 90 (441)
..+++++|++++++.|..++... ...+++|+||||||||++++.+++.+.. .++.+++.+..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 55789999999999999887541 2236999999999999999999988632 35666654321
Q ss_pred cccccchHHHHHHHHHHHH-hhhhc-CCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 91 KAHVGESEKALREAFSQAS-SHALS-GKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
. ...+........ ..... +++.+++|||+|.+. ......|+..++... .++.+|.+
T Consensus 89 ~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~~~------~~~~~i~~ 146 (327)
T 1iqp_A 89 G------INVIREKVKEFARTKPIGGASFKIIFLDEADALT----------QDAQQALRRTMEMFS------SNVRFILS 146 (327)
T ss_dssp H------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC----------HHHHHHHHHHHHHTT------TTEEEEEE
T ss_pred c------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC----------HHHHHHHHHHHHhcC------CCCeEEEE
Confidence 1 111111121111 11112 457899999999872 245667777777632 24678888
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
++.+..+.+.+.+ |+. .+.+++++.++..+++...+.......+ ..++.++..+.| +.+.+.++++.+
T Consensus 147 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 147 CNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp ESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred eCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8988899999998 886 8999999999999999988776554322 235666766654 455554554433
No 83
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.65 E-value=2.5e-15 Score=142.37 Aligned_cols=217 Identities=18% Similarity=0.206 Sum_probs=134.7
Q ss_pred ccccccc-c--hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccC
Q 013506 16 KAEEAIG-G--NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPH 87 (441)
Q Consensus 16 ~~~~~i~-G--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~ 87 (441)
.+|++++ | ...+...+..+...+ + . +.+++|+||||||||++++++++.+ +.+++++++.
T Consensus 102 ~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 102 YTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3678877 5 333444444443321 1 1 5789999999999999999999987 6778888876
Q ss_pred ccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 88 SVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
.+...............|.... ..++++|||||++.+.... .....++..++..... +..++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~vL~IDEi~~l~~~~--------~~q~~l~~~l~~l~~~----~~~iIit 233 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKY----RKKVDILLIDDVQFLIGKT--------GVQTELFHTFNELHDS----GKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH----TTTCSEEEEECGGGGSSCH--------HHHHHHHHHHHHHHTT----TCEEEEE
T ss_pred HHHHHHHHHHHcccHHHHHHHh----cCCCCEEEEeCcccccCCh--------HHHHHHHHHHHHHHHC----CCeEEEE
Confidence 6432211111100001111111 1258899999999885321 2334444444332111 1346666
Q ss_pred EcCCCCc---cCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 168 STNRVDA---IDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 168 ~~~~~~~---l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+.+++.. +++++.+ ||. ..+.+++|+.+++.+|+...+.......+ ..+..++..+. .+.+++..+++.+.
T Consensus 234 t~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~-gn~R~l~~~L~~~~ 310 (440)
T 2z4s_A 234 SDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVD-DNLRRLRGAIIKLL 310 (440)
T ss_dssp ESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCC-SCHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 6665554 7899998 885 67899999999999999988765443322 23677887776 47888888888877
Q ss_pred HHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 242 MSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
..+.... ..++.+++..++...
T Consensus 311 ~~a~~~~---------~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 311 VYKETTG---------KEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHSS---------SCCCHHHHHHHTSTT
T ss_pred HHHHHhC---------CCCCHHHHHHHHHHH
Confidence 6554321 136677776665543
No 84
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=5.8e-15 Score=150.16 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=137.3
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVG 95 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~ 95 (441)
+.++|++.+++.+.+.+....... ...-.+..++||+||||||||++|++++..+ +.+++.+++..+......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~----~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL----KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC----SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 569999999999999886522110 0001222479999999999999999999987 578999999888766544
Q ss_pred chHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEcC
Q 013506 96 ESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVVVVASTN 170 (441)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~vi~~~~ 170 (441)
. ...+.. .... ..+++|||||++.+ +...+..|+..++..... .....++++|+|+|
T Consensus 567 ~-~~~l~~---~~~~----~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 S-GGQLTE---KVRR----KPYSVVLLDAIEKA----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C----CHH---HHHH----CSSSEEEEECGGGS----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c-cchhhH---HHHh----CCCeEEEEeCcccc----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 3 111111 1111 23689999999977 346788888888763321 12234678899998
Q ss_pred CCCc------------cCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC-------CCCCcc---cHHHHHHHC--C
Q 013506 171 RVDA------------IDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV-------PLDANV---DLEAIATSC--N 226 (441)
Q Consensus 171 ~~~~------------l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~-------~~~~~~---~~~~l~~~~--~ 226 (441)
.+.. +.|.+.+ ||+.++.|++|+.+++.+|+..++... ...... ..+.++... .
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 6543 7888988 998899999999999999988765442 111112 245555432 3
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 013506 227 GYVGADLEALCREATMSAVK 246 (441)
Q Consensus 227 g~~~~~i~~l~~~a~~~~~~ 246 (441)
.++.+.++++++.+....+.
T Consensus 707 ~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 707 EYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp TTTTTTHHHHHHHHTHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 46778888888876655544
No 85
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.63 E-value=1.5e-14 Score=155.26 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=88.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhh----hhcc------------CchHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELY----SMYV------------GESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~----~~~~------------g~~~~~~~~~~~~a~ 380 (441)
++.++.+++|+||||||||++|.+++... |..+..++..+.. .+.. ...++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 57788899999999999999999887665 4455555544321 1112 245667777888888
Q ss_pred hcCCeEEEEeccccccccc---CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeee
Q 013506 381 LAAPSIIFFDEADVVGAKR---GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIF 438 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~ 438 (441)
...+++|||||++.+.|.+ +..+++..+...|+++++|.+|.+...+..|+++.+|.-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEccc
Confidence 8999999999999988853 332222222357899999999999999999999999863
No 86
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.63 E-value=6.6e-15 Score=135.13 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=109.9
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc--cc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK--AH 93 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~--~~ 93 (441)
..+++++|++.+++.+...+.. +.+++|+||||||||++++.+++.++.+++.+++..... ..
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 4457899999999988877643 368999999999999999999999999988877632110 00
Q ss_pred ccchHHHHHHHHHHHHh--hhhcC--CCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCCeEE
Q 013506 94 VGESEKALREAFSQASS--HALSG--KPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVPHVV 164 (441)
Q Consensus 94 ~~~~~~~~~~~~~~~~~--~~~~~--~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~ 164 (441)
.+.. .+..... ....+ ..++|||||+|.+ +...+..|+..++..... ......++
T Consensus 89 ~g~~------~~~~~~~~~~~~~g~l~~~vl~iDEi~~~----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 89 IGTM------IYNQHKGNFEVKKGPVFSNFILADEVNRS----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp HEEE------EEETTTTEEEEEECTTCSSEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred CCce------eecCCCCceEeccCcccccEEEEEccccC----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 0000 0000000 00000 1369999999986 335566777777643110 01122467
Q ss_pred EEEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhcc
Q 013506 165 VVASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 165 vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~ 209 (441)
+++|+|+.+ .+++++.+ ||...+.++.|+.+++.+|++.....
T Consensus 153 viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 888888654 38999999 99878999999999999999987664
No 87
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.63 E-value=5.8e-14 Score=128.50 Aligned_cols=216 Identities=21% Similarity=0.249 Sum_probs=142.8
Q ss_pred ccccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccc
Q 013506 15 WKAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHV 94 (441)
Q Consensus 15 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~ 94 (441)
..++++++|++.+++.+...+.... ..+ .++.+++|+|||||||||+++++++.++.++...++..+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 3577899999999999887764310 001 23478999999999999999999999988877666543321
Q ss_pred cchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-------C-----CCCCe
Q 013506 95 GESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------K-----TSVPH 162 (441)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~-----~~~~~ 162 (441)
...+...+.. .....|+||||++.+.+ ...+.++..++..... . ...+.
T Consensus 90 ---~~~l~~~~~~------~~~~~v~~iDE~~~l~~----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 90 ---QGDMAAILTS------LERGDVLFIDEIHRLNK----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp ---HHHHHHHHHH------CCTTCEEEEETGGGCCH----------HHHHHHHHHHHTSCCCC---------------CC
T ss_pred ---HHHHHHHHHH------ccCCCEEEEcchhhcCH----------HHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 1222222221 12367999999998742 2334444444332110 0 01134
Q ss_pred EEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 163 VVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 163 ~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+.++.+++.+..+++.+++ ||...+.+++++.+++.++++..........+. .+..++..+.| +++.+..+++.+.
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~ 227 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVR 227 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 6777889999999999999 998789999999999999999887665544332 36777777775 4577777777665
Q ss_pred HHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 242 MSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
..+..... ..++.+++..+...
T Consensus 228 ~~a~~~~~--------~~It~~~v~~al~~ 249 (334)
T 1in4_A 228 DMLTVVKA--------DRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHTC--------SSBCHHHHHHHHHH
T ss_pred HHHHHcCC--------CCcCHHHHHHHHHH
Confidence 54433211 23566666665554
No 88
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.62 E-value=2.2e-14 Score=134.88 Aligned_cols=222 Identities=21% Similarity=0.181 Sum_probs=139.9
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEccCcc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHSV 89 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---------~~~~~~v~~~~~ 89 (441)
++++|.++.++.+..++..... -..+.+++|+||||||||++++.+++.+ +..++++++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 7899999999999987743211 1346789999999999999999999988 677888887653
Q ss_pred cccc----------------ccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhc
Q 013506 90 HKAH----------------VGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDS 152 (441)
Q Consensus 90 ~~~~----------------~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~ 152 (441)
.... .+..... ...++.... ..+++.+|||||+|.+.... .....+..++...+.
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~-----~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP-----GGQDLLYRITRINQE 161 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST-----THHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC-----CCChHHHhHhhchhh
Confidence 2210 0111111 222222111 13447899999999884321 022444555554443
Q ss_pred CCCCCCCCCeEEEEEEcCCC---CccCHHHhhCCccce-EEEecCCCHHHHHHHHHHHhcc--CCCC-CcccHHHHHHHC
Q 013506 153 NKPSKTSVPHVVVVASTNRV---DAIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKK--VPLD-ANVDLEAIATSC 225 (441)
Q Consensus 153 ~~~~~~~~~~~~vi~~~~~~---~~l~~~l~~~~r~~~-~i~~~~p~~~~~~~il~~~~~~--~~~~-~~~~~~~l~~~~ 225 (441)
... ..++.+|+++|.+ ..+++++.+ ||.. .+.+++|+.+++.+++...+.. .... .+..++.++..+
T Consensus 162 ~~~----~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~ 235 (387)
T 2v1u_A 162 LGD----RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALA 235 (387)
T ss_dssp C---------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHH
T ss_pred cCC----CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 210 2257888888876 678899988 8864 8999999999999999987654 2222 222356666666
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 226 N--GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 226 ~--g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
. ..+++.+..+++.+...+.... ...++.+++..+...
T Consensus 236 ~~~~G~~r~~~~~l~~a~~~a~~~~--------~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 236 AREHGDARRALDLLRVAGEIAERRR--------EERVRREHVYSARAE 275 (387)
T ss_dssp HSSSCCHHHHHHHHHHHHHHHHHTT--------CSCBCHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHHcC--------CCCcCHHHHHHHHHH
Confidence 5 1356667777777765443321 123666676665543
No 89
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.62 E-value=2.2e-15 Score=144.12 Aligned_cols=150 Identities=19% Similarity=0.360 Sum_probs=105.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++.++.+.+.+.. ....++||+||||||||++++.++..+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 4678999999999999988754 245789999999999999999999987 56677776
Q ss_pred cCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEE
Q 013506 86 PHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVV 165 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v 165 (441)
+. ..+.+.....+..++..+.. ..+.||||| . .......|+..++. +.+.+
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD--~------------~~~a~~~L~~~L~~--------g~v~v 294 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQ----AGNIILFID--A------------AIDASNILKPSLAR--------GELQC 294 (468)
T ss_dssp ------------CTTHHHHHHHHHT----CCCCEEEEC--C--------------------CCCTTS--------SSCEE
T ss_pred CC---ccccchHHHHHHHHHHHHHh----cCCeEEEEe--C------------chhHHHHHHHhhcC--------CCEEE
Confidence 65 33344444556666666553 347899999 0 11233334444432 25789
Q ss_pred EEEcCCCC-----ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC
Q 013506 166 VASTNRVD-----AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV 210 (441)
Q Consensus 166 i~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~ 210 (441)
|++||... .+++++.+ ||. .+.++.|+.+++.+|++.+...+
T Consensus 295 I~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~ 341 (468)
T 3pxg_A 295 IGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRY 341 (468)
T ss_dssp EEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTS
T ss_pred EecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHH
Confidence 99998876 68999999 997 69999999999999999877653
No 90
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.62 E-value=1e-14 Score=133.24 Aligned_cols=187 Identities=20% Similarity=0.218 Sum_probs=126.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~ 90 (441)
..+++++|++.+++.|.+++.. ....+++|+||||||||++++.+++.+ ..+++.+++....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 5678999999999999887643 122349999999999999999999986 2346777765532
Q ss_pred cccccchHHHHHHHHHHHHhhhh-cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEc
Q 013506 91 KAHVGESEKALREAFSQASSHAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAST 169 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~ 169 (441)
.. ......+.... ..... .+++.+++|||+|.+. ......|+..++.. .+++.+|.++
T Consensus 81 ~~--~~~~~~~~~~~---~~~~~~~~~~~vliiDe~~~l~----------~~~~~~L~~~le~~------~~~~~~i~~~ 139 (319)
T 2chq_A 81 GI--DVVRHKIKEFA---RTAPIGGAPFKIIFLDEADALT----------ADAQAALRRTMEMY------SKSCRFILSC 139 (319)
T ss_dssp CT--TTSSHHHHHHH---HSCCSSSCCCEEEEEETGGGSC----------HHHHHTTGGGTSSS------SSSEEEEEEE
T ss_pred Ch--HHHHHHHHHHH---hcCCCCCCCceEEEEeCCCcCC----------HHHHHHHHHHHHhc------CCCCeEEEEe
Confidence 21 11111111111 11111 2457899999999873 23455555555542 2357888889
Q ss_pred CCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 170 NRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 170 ~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
|.+..+.+.+.+ |+. .+.+++|+.+++.+++...+.......+. .+..++..+.| +.+.+.+.++.+
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999999998 886 89999999999999999888766554332 35666665544 445554544443
No 91
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.62 E-value=2.7e-15 Score=125.77 Aligned_cols=152 Identities=21% Similarity=0.349 Sum_probs=102.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----------GAHLTVIS 85 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----------~~~~~~v~ 85 (441)
..+++++|.++..+.+.+.+.. ..+.+++|+||||||||++++.+++.+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4678999999999888887633 245789999999999999999999987 56677776
Q ss_pred cCcccc--ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 86 PHSVHK--AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
+..+.. ...+.....+..++...... ..+.+|||||++.+.+..... .........+...++.. ++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~-~~~~~~~~~l~~~~~~~--------~~ 153 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVA-EGALDAGNILKPMLARG--------EL 153 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSC-TTSCCTHHHHHHHHHTT--------CS
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhccccccc-ccchHHHHHHHHHHhcC--------Ce
Confidence 654431 12233333444444444322 357899999999986443211 10112344444444432 36
Q ss_pred EEEEEcCCCC-----ccCHHHhhCCccceEEEecCCC
Q 013506 164 VVVASTNRVD-----AIDPALRRSGRFDAEVEVTVPT 195 (441)
Q Consensus 164 ~vi~~~~~~~-----~l~~~l~~~~r~~~~i~~~~p~ 195 (441)
.+|++++.+. .+++++.+ ||. .+.++.|+
T Consensus 154 ~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 154 RCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred eEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 7788887654 68999999 998 58898885
No 92
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=2e-14 Score=133.37 Aligned_cols=188 Identities=20% Similarity=0.229 Sum_probs=128.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC------CcEEEEccCcc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG------AHLTVISPHSV 89 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~------~~~~~v~~~~~ 89 (441)
..+++++|++++++.|..++... ...+++|+||||||||++++.+++.++ ..++.+++.+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 56799999999999999887431 123599999999999999999998864 35677776543
Q ss_pred ccccccchHHHHHHHHHHHHh------------hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC
Q 013506 90 HKAHVGESEKALREAFSQASS------------HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK 157 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 157 (441)
.. ...+......... ......+.+++|||+|.+. ......++..++....
T Consensus 101 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~----------~~~~~~Ll~~le~~~~-- 162 (353)
T 1sxj_D 101 RG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT----------ADAQSALRRTMETYSG-- 162 (353)
T ss_dssp CC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC----------HHHHHHHHHHHHHTTT--
T ss_pred cc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC----------HHHHHHHHHHHHhcCC--
Confidence 11 1112221111111 0112345799999999873 2455677777776432
Q ss_pred CCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHH
Q 013506 158 TSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEAL 236 (441)
Q Consensus 158 ~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l 236 (441)
+..+|.++|.+..+.+.+.+ |+. .+.+++|+.++...++...+....... +..++.++..+.|. .+.+.++
T Consensus 163 ----~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~ 234 (353)
T 1sxj_D 163 ----VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITL 234 (353)
T ss_dssp ----TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHH
T ss_pred ----CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 35666778888899999998 886 899999999999999998876554433 23367778877754 5555555
Q ss_pred HHHHHH
Q 013506 237 CREATM 242 (441)
Q Consensus 237 ~~~a~~ 242 (441)
++.+..
T Consensus 235 l~~~~~ 240 (353)
T 1sxj_D 235 LQSASK 240 (353)
T ss_dssp HHHTHH
T ss_pred HHHHHH
Confidence 555443
No 93
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.61 E-value=2e-14 Score=125.73 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=122.2
Q ss_pred cccccccc---hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccCcc
Q 013506 16 KAEEAIGG---NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSV 89 (441)
Q Consensus 16 ~~~~~i~G---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~~~~~ 89 (441)
.+|++++| .+.+.+.+..++.. ..+.+++|+||||||||++++.++..+. .+++++++..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56788886 34666666665532 2467999999999999999999998774 56778877665
Q ss_pred ccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE-EEEEE
Q 013506 90 HKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV-VVVAS 168 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~vi~~ 168 (441)
........ . ...++.+|+|||++.+.... .....++..++..... ..+ +++++
T Consensus 92 ~~~~~~~~--------~------~~~~~~vliiDe~~~~~~~~--------~~~~~l~~~l~~~~~~----~~~~ii~~~ 145 (242)
T 3bos_A 92 ASISTALL--------E------GLEQFDLICIDDVDAVAGHP--------LWEEAIFDLYNRVAEQ----KRGSLIVSA 145 (242)
T ss_dssp GGSCGGGG--------T------TGGGSSEEEEETGGGGTTCH--------HHHHHHHHHHHHHHHH----CSCEEEEEE
T ss_pred HHHHHHHH--------H------hccCCCEEEEeccccccCCH--------HHHHHHHHHHHHHHHc----CCCeEEEEc
Confidence 44321110 0 01237899999999874311 1233344433321110 023 44444
Q ss_pred cCCCC---ccCHHHhhCCccc--eEEEecCCCHHHHHHHHHHHhccCCCCCc-ccHHHHHHHCCCCCHHHHHHHHHHHHH
Q 013506 169 TNRVD---AIDPALRRSGRFD--AEVEVTVPTAEERFEILKLYTKKVPLDAN-VDLEAIATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 169 ~~~~~---~l~~~l~~~~r~~--~~i~~~~p~~~~~~~il~~~~~~~~~~~~-~~~~~l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
+..+. .+.+.+.+ ||. ..+.+++|+.+++.+++...+.......+ ..++.++..+.| +.+.+..+++.+..
T Consensus 146 ~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 146 SASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDK 222 (242)
T ss_dssp SSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 44443 45588888 774 68999999999999999988876554333 236677777654 77888888887776
Q ss_pred HHH
Q 013506 243 SAV 245 (441)
Q Consensus 243 ~~~ 245 (441)
.+.
T Consensus 223 ~a~ 225 (242)
T 3bos_A 223 ASM 225 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 94
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.61 E-value=3.3e-15 Score=135.88 Aligned_cols=136 Identities=21% Similarity=0.395 Sum_probs=103.3
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCC---CCCceEEEECCCCCcHHHHHHHHHHHc-------CCceEEechhhh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI---SPVRGALLHGPPGCSKTTLAKAAAHAA-------EASFFSLSGAEL 360 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ll~Gp~GtGKTtla~~la~~~-------~~~~~~i~~~~~ 360 (441)
+++|++.+++.+.+.+..... .....+.++ .++.+++|+||||||||++|+++|..+ ..+++.++.+++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999988775332 222223332 345579999999999999999999988 348999999999
Q ss_pred hhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 361 YSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 361 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+.|.|.+...+..+|..+ .++||||||+|.+++.++. .....++++.|++.|+.... ..++|+++|
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~~~-~~~~i~~~~ 177 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENNRD-DLVVILAGY 177 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHCTT-TCEEEEEEC
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcCCC-CEEEEEeCC
Confidence 9999999999999999887 3569999999999865442 23356889999999996443 344455543
No 95
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=2e-14 Score=134.94 Aligned_cols=215 Identities=19% Similarity=0.151 Sum_probs=133.6
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEccC
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-----------GAHLTVISPH 87 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----------~~~~~~v~~~ 87 (441)
++++|.++.++.+.+++..... -..+.+++|+||||||||++++.+++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 7899999999999988754221 1345689999999999999999999987 7888888865
Q ss_pred ccc-ccc--ccchHHHH------------HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHH-HHHHHHHHh
Q 013506 88 SVH-KAH--VGESEKAL------------REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRI-ASQLFTLMD 151 (441)
Q Consensus 88 ~~~-~~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~-~~~l~~~~~ 151 (441)
... ... .......+ ..++....... ...+.+|+|||+|.+..... ... +..+....
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~vlilDEi~~l~~~~~------~~~~l~~l~~~~- 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-RNIRAIIYLDEVDTLVKRRG------GDIVLYQLLRSD- 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-SSSCEEEEEETTHHHHHSTT------SHHHHHHHHTSS-
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-ccCCCEEEEECHHHhccCCC------CceeHHHHhcCC-
Confidence 432 100 00000000 11122221111 12234999999998843210 122 33333222
Q ss_pred cCCCCCCCCCeEEEEEEcCCC---CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC--CC-CcccHHHHHHHC
Q 013506 152 SNKPSKTSVPHVVVVASTNRV---DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP--LD-ANVDLEAIATSC 225 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~---~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~--~~-~~~~~~~l~~~~ 225 (441)
.++.+|++++.+ ..+++++.+ ||...+.+++|+.++..+++...+.... .. .+..++.++..+
T Consensus 163 ---------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 163 ---------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp ---------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHH
T ss_pred ---------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHH
Confidence 257888888876 678899988 8866999999999999999998776311 11 222356666665
Q ss_pred CC--CCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 226 NG--YVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 226 ~g--~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.. -+.+.+..+++.+...+. +...++.+++..+...
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~----------~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS----------GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT----------SSSCCCHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhc----------CCCccCHHHHHHHHHH
Confidence 51 345555566665543332 1224666776665543
No 96
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=3.7e-14 Score=132.55 Aligned_cols=188 Identities=18% Similarity=0.241 Sum_probs=131.5
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---------------
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--------------- 80 (441)
..+++++|++..++.|.+.+... ..++.++|+||+|||||++++.+++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 45689999999999999987531 234679999999999999999999988542
Q ss_pred ---------EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHh
Q 013506 81 ---------LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMD 151 (441)
Q Consensus 81 ---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~ 151 (441)
++.++.... .....+..++.........+++.+++|||+|.+ +......|+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l----------~~~~~~~Ll~~le 144 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML----------SRHSFNALLKTLE 144 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGS----------CHHHHHHHHHHHH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchh----------cHHHHHHHHHHHh
Confidence 222222110 011123444444433333455789999999987 2345677777777
Q ss_pred cCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCCCCH
Q 013506 152 SNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNGYVG 230 (441)
Q Consensus 152 ~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g~~~ 230 (441)
... .++++|.+++.+..+.+.+.+ |+ ..+.+++|+.++..+++...+.......+. .+..++..+.| +.
T Consensus 145 ~~~------~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 145 EPP------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp SCC------SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred cCC------CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 532 257888888888888999988 77 489999999999999999887665444332 36677777765 66
Q ss_pred HHHHHHHHHHH
Q 013506 231 ADLEALCREAT 241 (441)
Q Consensus 231 ~~i~~l~~~a~ 241 (441)
+.+..+++.+.
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 97
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=5.9e-15 Score=136.76 Aligned_cols=165 Identities=28% Similarity=0.336 Sum_probs=100.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE----EccCcccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV----ISPHSVHK 91 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~----v~~~~~~~ 91 (441)
.+|++++|+++.++.+......+ ...++||+||||||||+++++++..++..... +++.....
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~-------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 87 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 87 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCG-------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG
T ss_pred CCchhccChHHHHHHHHHHhhCC-------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc
Confidence 45789999999887765443221 23469999999999999999999988631110 11111000
Q ss_pred ---------------------ccccchHHHH------HHHHHHHHhhh-----hcCCCeEEEEccccccccCCCCCchhh
Q 013506 92 ---------------------AHVGESEKAL------REAFSQASSHA-----LSGKPSVVFIDEIDALCPRRDHRREQD 139 (441)
Q Consensus 92 ---------------------~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~il~iDe~~~l~~~~~~~~~~~ 139 (441)
...+.....+ ...+....... ....+++|||||++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~---------- 157 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE---------- 157 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC----------
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC----------
Confidence 0011111111 11111110000 01136899999999873
Q ss_pred HHHHHHHHHHHhcCC----CCCC---CCCeEEEEEEcCCCC-ccCHHHhhCCccceEEEecCC-CHHHHHHHHHH
Q 013506 140 VRIASQLFTLMDSNK----PSKT---SVPHVVVVASTNRVD-AIDPALRRSGRFDAEVEVTVP-TAEERFEILKL 205 (441)
Q Consensus 140 ~~~~~~l~~~~~~~~----~~~~---~~~~~~vi~~~~~~~-~l~~~l~~~~r~~~~i~~~~p-~~~~~~~il~~ 205 (441)
...+..|+..++... .... ...++++|+++|+.. .+++++.+ ||...+.+++| +.+++.+|+..
T Consensus 158 ~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 345667777766421 1100 112588999999754 89999999 99877999999 57777677765
No 98
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=2.6e-14 Score=130.78 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=128.0
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG-----AHLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~-----~~~~~v~~~~~~ 90 (441)
..+++++|++..++.|.+++... ...+++|+||+|+|||++++.+++.+. ..++.+++.+..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG-------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 56789999999999999887431 123499999999999999999998862 346677665421
Q ss_pred cccccchHHHHHHHHHHHHh--hhh-cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEE
Q 013506 91 KAHVGESEKALREAFSQASS--HAL-SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVA 167 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~ 167 (441)
....+...+..... ... .+++.+++|||+|.+. ......|+..++... +++.+|.
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~----------~~~~~~L~~~le~~~------~~~~~il 142 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT----------AGAQQALRRTMELYS------NSTRFAF 142 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC----------HHHHHTTHHHHHHTT------TTEEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC----------HHHHHHHHHHHhccC------CCceEEE
Confidence 12334444443331 111 3347899999999873 234566677776532 2467778
Q ss_pred EcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHHHH
Q 013506 168 STNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCREA 240 (441)
Q Consensus 168 ~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~~a 240 (441)
+++.+..+.+.+.+ |+. .+.+++|+.+++.+++...+....... +..+..++..+.| +.+.+..+++..
T Consensus 143 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 143 ACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred EeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 88888899999998 875 899999999999999998776544332 2235677777765 344444444443
No 99
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.60 E-value=3e-14 Score=151.42 Aligned_cols=117 Identities=17% Similarity=0.156 Sum_probs=80.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH---cCCceEEechhhh----------------hhhccCchHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHA---AEASFFSLSGAEL----------------YSMYVGESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~---~~~~~~~i~~~~~----------------~~~~~g~~~~~~~~~~~~a~ 380 (441)
|+++++.+.++||+||||||+|-.++.. .|..+..++...- +-.+....|+.+.-+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 5566677899999999999998766532 3555555555321 11134445777888888888
Q ss_pred hcCCeEEEEecccccccccCCC---CCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 LAAPSIIFFDEADVVGAKRGGS---SSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...++++++|.+..+.|...-. +++.-+...|+.++-|..|.+.-....++++-.|
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 8999999999999999875322 3445556678888888888887665555554444
No 100
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.59 E-value=1.5e-14 Score=147.34 Aligned_cols=204 Identities=19% Similarity=0.253 Sum_probs=137.1
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCC----CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccc--
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGL----KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKA-- 92 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~-- 92 (441)
+.++|++.+++.+.+.+... ..|+ .+..++||+||||||||++|+++++.++.+++.+++.++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 45899999999998877542 1122 234589999999999999999999999999999998776542
Q ss_pred ---ccc----chHHHH-HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCC
Q 013506 93 ---HVG----ESEKAL-REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTS 159 (441)
Q Consensus 93 ---~~~----~~~~~~-~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~ 159 (441)
..+ ...... ..+..... ...++||||||++.+ +.+++..|+..++..... ...
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~~~----~~~~~vl~lDEi~~~----------~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDAVI----KHPHAVLLLDEIEKA----------HPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHHHH----HCSSEEEEEETGGGS----------CHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred HhhhcCCCCCCcCccccchHHHHHH----hCCCcEEEEeCcccc----------CHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 111 111000 11111111 123789999999987 336788888888753211 111
Q ss_pred CCeEEEEEEcCCCC-------------------------ccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC----
Q 013506 160 VPHVVVVASTNRVD-------------------------AIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV---- 210 (441)
Q Consensus 160 ~~~~~vi~~~~~~~-------------------------~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~---- 210 (441)
..++++|+|+|... .++|++.+ ||+..+.|++|+.+++.+|+..++...
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~ 673 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 673 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23578999999743 56788888 998889999999999999998876532
Q ss_pred ---CC--C-CcccHHHHHHHC--CCCCHHHHHHHHHHHHHHHHH
Q 013506 211 ---PL--D-ANVDLEAIATSC--NGYVGADLEALCREATMSAVK 246 (441)
Q Consensus 211 ---~~--~-~~~~~~~l~~~~--~g~~~~~i~~l~~~a~~~~~~ 246 (441)
.. . .+..++.++... ..+..+.+.++++.+....+.
T Consensus 674 ~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~ 717 (758)
T 1r6b_X 674 DQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLA 717 (758)
T ss_dssp HHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHH
T ss_pred HHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHH
Confidence 11 1 111245555544 235578888888877655433
No 101
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=3.5e-14 Score=131.71 Aligned_cols=189 Identities=19% Similarity=0.232 Sum_probs=122.6
Q ss_pred cccccccchHHHHHHHHHHH-HhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------------
Q 013506 16 KAEEAIGGNRAAVEALRELI-TFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH-------------- 80 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~-------------- 80 (441)
..+++++|++.+++.|..++ .. ....+++|+||+|+||||+++.+++.+..+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 56799999999999988766 22 112239999999999999999999965211
Q ss_pred ---------------EEEEccCccccccccchHHHHHHHHHHHHhhh----------hcCCCeEEEEccccccccCCCCC
Q 013506 81 ---------------LTVISPHSVHKAHVGESEKALREAFSQASSHA----------LSGKPSVVFIDEIDALCPRRDHR 135 (441)
Q Consensus 81 ---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~il~iDe~~~l~~~~~~~ 135 (441)
++.++..... ......+........... ...++.+++|||++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L------- 146 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL------- 146 (354)
T ss_dssp --------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-------
T ss_pred cccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-------
Confidence 1122211100 000012333333322110 1236789999999875
Q ss_pred chhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-
Q 013506 136 REQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA- 214 (441)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~- 214 (441)
+......++..++.... +..+|.+++.+..+.+.+.+ |+ ..+.|++|+.+++.+++...+.......
T Consensus 147 ---~~~~~~~L~~~le~~~~------~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKYSK------NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLE 214 (354)
T ss_dssp ---CHHHHHHHHHHHHHSTT------TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEEC
T ss_pred ---CHHHHHHHHHHHHhhcC------CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 33556777777776432 46777888888889999998 88 5899999999999999998876554432
Q ss_pred -cccHHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 215 -NVDLEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 215 -~~~~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
+..+..++..+.| +.+.+..+++.+.
T Consensus 215 ~~~~l~~i~~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 215 TKDILKRIAQASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp CSHHHHHHHHHHTT-CHHHHHHHHTHHH
T ss_pred cHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 2346777777765 4555555555443
No 102
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=2.5e-13 Score=127.74 Aligned_cols=220 Identities=17% Similarity=0.115 Sum_probs=139.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCc--EEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccCccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPR--GLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPHSVHKA 92 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~vll~Gp~GtGKT~l~~~l~~~l----~~~~~~v~~~~~~~~ 92 (441)
++++|.++.++.|..++...... ..+. +++|+||||||||++++.+++.+ +..++++++......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 78999999999999987542111 2334 89999999999999999999988 456778876543210
Q ss_pred ----------------cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC
Q 013506 93 ----------------HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS 156 (441)
Q Consensus 93 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 156 (441)
..+.....+...+..... ..+++.+|+|||++.+ +...+..+...++.....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~vlilDE~~~l----------~~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR--ERDLYMFLVLDDAFNL----------APDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH--HTTCCEEEEEETGGGS----------CHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHh--hcCCeEEEEEECcccc----------chHHHHHHHHHHHhCCCC
Confidence 001111111111111111 1245789999999987 235566676666432110
Q ss_pred CCCCCeEEEEEEcCCC---CccCHHHhhCCccce-EEEecCCCHHHHHHHHHHHhccC---CCCCcccHHHHHHHCC---
Q 013506 157 KTSVPHVVVVASTNRV---DAIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKKV---PLDANVDLEAIATSCN--- 226 (441)
Q Consensus 157 ~~~~~~~~vi~~~~~~---~~l~~~l~~~~r~~~-~i~~~~p~~~~~~~il~~~~~~~---~~~~~~~~~~l~~~~~--- 226 (441)
...++.+|++++.+ ..+++.+.+ ||.. .+.+++++.++..+++...+... ....+..++.++..+.
T Consensus 156 --~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 156 --GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp --SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred --CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 00147888888877 567888887 7764 79999999999999998876541 1122334667777773
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 227 -----GYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 227 -----g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
+-.++.+..+++.+...+..... ..++.+++..+...
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~--------~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGR--------KHIAPEDVRKSSKE 273 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTC--------SSCCHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCC--------CCcCHHHHHHHHHH
Confidence 33567777777777655543321 23556666655443
No 103
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=1.2e-13 Score=133.91 Aligned_cols=205 Identities=18% Similarity=0.255 Sum_probs=123.2
Q ss_pred cccccccchHHHHHHHHHHHHhhccC-chHHHhcCC---CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLY-SSQAQKLGL---KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK 91 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~-~~~~~~~~~---~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~ 91 (441)
..+++++|++.+++.|.+++...... +..+...+. .+.++++|+||||||||++|+++++.++.+++.+++.+...
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 57799999999999999998642110 111122222 24579999999999999999999999999999999876543
Q ss_pred ccccchH-H------HHHHHHHHHH-hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeE
Q 013506 92 AHVGESE-K------ALREAFSQAS-SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHV 163 (441)
Q Consensus 92 ~~~~~~~-~------~~~~~~~~~~-~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 163 (441)
....... . .+...|.... ......++.||||||+|.+..... ..+..+...++.... .+
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-------~~l~~L~~~l~~~~~------~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-------GGVGQLAQFCRKTST------PL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-------THHHHHHHHHHHCSS------CE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-------HHHHHHHHHHHhcCC------CE
Confidence 2110000 0 0000111100 001124578999999999864321 234556666655321 24
Q ss_pred EEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCC-cccHHHHHHHCCCCCHHHHHHHHH
Q 013506 164 VVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDA-NVDLEAIATSCNGYVGADLEALCR 238 (441)
Q Consensus 164 ~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~~i~~l~~ 238 (441)
+++++......++ .+. |+...+.|++|+.+++.+++...+....... +..+..++..+.|- .+.+.++++
T Consensus 183 Ili~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd-iR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD-IRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC-HHHHHHHHT
T ss_pred EEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 4444333223343 344 3445899999999999999987765543322 22377788877653 344333333
No 104
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.2e-13 Score=125.32 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=119.3
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEccCccc
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA-----HLTVISPHSVH 90 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~-----~~~~v~~~~~~ 90 (441)
..+++++|++.+++.|...+... .. .+++|+||||||||++++++++.+.. .+..+++.+..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g------------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG------------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC------------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 67899999999999999887531 11 24999999999999999999998743 25556654321
Q ss_pred cccccchHHHHHHHHHHHHh--hhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEE
Q 013506 91 KAHVGESEKALREAFSQASS--HALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVAS 168 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~ 168 (441)
+ ...++........ ....+.+.+++|||+|.+. ......|+..++.... ++.++.+
T Consensus 89 ----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~----------~~~~~~L~~~le~~~~------~~~~il~ 146 (340)
T 1sxj_C 89 ----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT----------NAAQNALRRVIERYTK------NTRFCVL 146 (340)
T ss_dssp ----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC----------HHHHHHHHHHHHHTTT------TEEEEEE
T ss_pred ----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhcCCC------CeEEEEE
Confidence 1 1223333322221 1112347899999999872 2456677777776432 4667778
Q ss_pred cCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcc-cHHHHHHHCCC
Q 013506 169 TNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANV-DLEAIATSCNG 227 (441)
Q Consensus 169 ~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~-~~~~l~~~~~g 227 (441)
+|.+..+.+.+.+ |+. .+.+++++.++..+++...+.......+. ..+.++..+.|
T Consensus 147 ~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 147 ANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8999999999998 886 78999999999999988877544433222 24555555544
No 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=1.9e-14 Score=128.07 Aligned_cols=113 Identities=18% Similarity=0.230 Sum_probs=83.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh-hhccCchHHHHHHHHHHHHhcCCeEEEEecccccccc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY-SMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~-~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~ 398 (441)
...++.++||+||||||||++|+++|..++.+++.++.++.+ +...+.....++.+|..+....+++|||||+|.+++.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 356677899999999999999999999999999999876532 2111223367888999988788899999999999876
Q ss_pred cCCCCCCCcchhhHHHHHHHHHhcCCCC-CCeE-EEEeee
Q 013506 399 RGGSSSTSITVGERLLSTLLTEMDGLEQ-AKVI-IYPISF 436 (441)
Q Consensus 399 r~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v-~~~~~~ 436 (441)
+..+ ......+++.|+..+++... ...+ +|.+||
T Consensus 140 ~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn 175 (272)
T 1d2n_A 140 VPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 175 (272)
T ss_dssp BTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEES
T ss_pred CCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecC
Confidence 5432 23456788888888887643 3344 444554
No 106
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.55 E-value=1.9e-13 Score=151.59 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=91.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~ 132 (441)
..++++.||+|||||++++.+|+.++.+++.+++.+-.+ ...+...|..+... +.++++||+|.+-+.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-----Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-----GAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-----TCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-----CCEeeehhhhhcChH-
Confidence 468999999999999999999999999999999976432 23455566555443 689999999987321
Q ss_pred CCCchhhHHHHHH----HHHHHhcCC-------CCCCCCCeEEEEEEcCCC----CccCHHHhhCCccceEEEecCCCHH
Q 013506 133 DHRREQDVRIASQ----LFTLMDSNK-------PSKTSVPHVVVVASTNRV----DAIDPALRRSGRFDAEVEVTVPTAE 197 (441)
Q Consensus 133 ~~~~~~~~~~~~~----l~~~~~~~~-------~~~~~~~~~~vi~~~~~~----~~l~~~l~~~~r~~~~i~~~~p~~~ 197 (441)
...++.+ +...+.... ....-++.+.+++|+|+. ..+++.+++ || ..+.+..|+.+
T Consensus 713 ------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~ 783 (2695)
T 4akg_A 713 ------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSG 783 (2695)
T ss_dssp ------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHH
Confidence 1122211 122222111 111234567788899863 478999998 88 47999999999
Q ss_pred HHHHHHH
Q 013506 198 ERFEILK 204 (441)
Q Consensus 198 ~~~~il~ 204 (441)
...+|+.
T Consensus 784 ~i~ei~l 790 (2695)
T 4akg_A 784 TIAEMIL 790 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888864
No 107
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=3.4e-14 Score=126.01 Aligned_cols=201 Identities=13% Similarity=0.179 Sum_probs=114.3
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccCcccccc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHKAH 93 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~~~~~~~~~ 93 (441)
+|++++|.+..++.+.+.+.... ..+.+++|+||||||||++|++++.... .+++.+++..+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 56889999999888887664421 2357899999999999999999998875 578999887653211
Q ss_pred ccchHHHH----HHHHHHHH----hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCC-----CCCCC
Q 013506 94 VGESEKAL----REAFSQAS----SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKP-----SKTSV 160 (441)
Q Consensus 94 ~~~~~~~~----~~~~~~~~----~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~ 160 (441)
. ...+ ...+.... .......+++|||||++.+. ...+..|+..++.... .....
T Consensus 73 ~---~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 73 L---DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP----------MMVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp H---HHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSC----------HHHHHHHHHHHHHCEECCCCC--CEE
T ss_pred H---HHHhcCCcccccccccccccchhhhcCCcEEEEechHhcC----------HHHHHHHHHHHHhCCeecCCCccccc
Confidence 0 0000 00000000 00001236799999999873 2456677777765311 01112
Q ss_pred CeEEEEEEcCCC-------CccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhc----cCCCCC--ccc---HHHH
Q 013506 161 PHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTK----KVPLDA--NVD---LEAI 221 (441)
Q Consensus 161 ~~~~vi~~~~~~-------~~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~----~~~~~~--~~~---~~~l 221 (441)
.++.+|+++|.. ..+.+++.+ ||. ..+.+|+... ++...++..++. ...... ..+ ++.+
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 246788888874 246788888 885 3566666654 455555444332 222211 222 3444
Q ss_pred HHHCCCCCHHHHHHHHHHHHHH
Q 013506 222 ATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 222 ~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
.......+.++++++++.+...
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHh
Confidence 4444445677888887776543
No 108
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=3.6e-13 Score=126.46 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=136.8
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEccCcccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC------GAHLTVISPHSVHK 91 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l------~~~~~~v~~~~~~~ 91 (441)
.++++|.++.++.|.+++..... -..+..++|+||+|||||++++.+++.+ +..++++++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 37899999999999987743211 1346789999999999999999999988 77788887643211
Q ss_pred c----------------cccchHHH-HHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC
Q 013506 92 A----------------HVGESEKA-LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK 154 (441)
Q Consensus 92 ~----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 154 (441)
. ..+..... ...++.... . .+.+.+|+|||++.+....+ ...+..++..++...
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~-~--~~~~~vlilDE~~~l~~~~~------~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR-D--YGSQVVIVLDEIDAFVKKYN------DDILYKLSRINSEVN 160 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH-T--CCSCEEEEEETHHHHHHSSC------STHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh-c--cCCeEEEEEcChhhhhccCc------CHHHHHHhhchhhcC
Confidence 0 00111112 222222221 1 23488999999998854321 135666666665431
Q ss_pred CCCCCCCeEEEEEEcCCC---CccCHHHhhCCccc-eEEEecCCCHHHHHHHHHHHhccCC--CC-CcccHHHHHHHCCC
Q 013506 155 PSKTSVPHVVVVASTNRV---DAIDPALRRSGRFD-AEVEVTVPTAEERFEILKLYTKKVP--LD-ANVDLEAIATSCNG 227 (441)
Q Consensus 155 ~~~~~~~~~~vi~~~~~~---~~l~~~l~~~~r~~-~~i~~~~p~~~~~~~il~~~~~~~~--~~-~~~~~~~l~~~~~g 227 (441)
..++.+|++++.+ ..+++.+.+ ||. ..+.+++++.++..+++...+.... .. .+..++.++..+..
T Consensus 161 -----~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (386)
T 2qby_A 161 -----KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR 233 (386)
T ss_dssp -----C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH
T ss_pred -----CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 1257778888776 467788888 764 4899999999999999988765321 11 22224555555541
Q ss_pred --CCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 228 --YVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 228 --~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
.+++.+..+++.+...+.... ...++.+++..+...
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~~~~--------~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAERMK--------DTKVKEEYVYMAKEE 271 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTT--------CSSCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--------CCccCHHHHHHHHHH
Confidence 345555566666654443321 123566666655443
No 109
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.53 E-value=3.8e-14 Score=132.34 Aligned_cols=134 Identities=27% Similarity=0.280 Sum_probs=83.0
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhh-----------------hcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFS-----------------RLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
.+.|++.+++.+...+........... .....+..+++|+||||||||++|+++|..++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467899999988877632222111100 012235668999999999999999999999999999
Q ss_pred Eechhhhh-hhccCch-HHHHHHHHHHH----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 354 SLSGAELY-SMYVGES-EALLRNTFQRA----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 354 ~i~~~~~~-~~~~g~~-~~~~~~~~~~a----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
.++++.+. ..|.|+. +..+..++..+ ....++|+||||+|++.+.|++.....+....++.+.||+.|++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 99988865 3455554 44455665543 234677999999999988765543333333456899999999964
No 110
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=1.1e-13 Score=142.17 Aligned_cols=210 Identities=17% Similarity=0.230 Sum_probs=137.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV- 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~- 94 (441)
++++|++.+++.+...+....... .-.-.+..+++|+||||||||++|++++..+ +.+++.+++..+.....
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~----~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGC----SCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 568999999999998875421100 0001233689999999999999999999988 67899999887654311
Q ss_pred ----cchHHHH----HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCC
Q 013506 95 ----GESEKAL----REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVP 161 (441)
Q Consensus 95 ----~~~~~~~----~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 161 (441)
+.....+ ...+..... ...+++|||||++.+ +..++..|+..++..... .....
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l----------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKA----------HPDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGC--------------CHHHHHH---HCSSEEEEESSGGGS----------CHHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEeccccc----------CHHHHHHHHHHhccCceECCCCCEeccC
Confidence 1000000 011111111 123689999999977 346788888888754211 11223
Q ss_pred eEEEEEEcCCC--------------------------CccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccC-----
Q 013506 162 HVVVVASTNRV--------------------------DAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKV----- 210 (441)
Q Consensus 162 ~~~vi~~~~~~--------------------------~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~----- 210 (441)
++++|+|+|.. ..+.|.+.+ |++..+.+.+|+.+++..|+..++...
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67899999972 245678888 998888899999999999988766532
Q ss_pred --CCC---CcccHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHh
Q 013506 211 --PLD---ANVDLEAIATSCN--GYVGADLEALCREATMSAVKR 247 (441)
Q Consensus 211 --~~~---~~~~~~~l~~~~~--g~~~~~i~~l~~~a~~~~~~~ 247 (441)
... .+..++.++.... .++.+.++++++.+.......
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 111 1122566666655 678899999988877655544
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=2.5e-12 Score=117.62 Aligned_cols=174 Identities=19% Similarity=0.176 Sum_probs=117.6
Q ss_pred chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------
Q 013506 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH---------------------- 80 (441)
Q Consensus 23 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~---------------------- 80 (441)
.+++..+.|...+... ..++.+||+||+|+|||++++.+++.+...
T Consensus 6 w~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4567777777766431 245679999999999999999999987532
Q ss_pred --EEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCC
Q 013506 81 --LTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKT 158 (441)
Q Consensus 81 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (441)
+..+++..- ........++.+.+........++..|++|||+|.+ +....+.|+..++...
T Consensus 74 ~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l----------~~~a~naLLk~lEep~---- 136 (334)
T 1a5t_A 74 PDYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL----------TDAAANALLKTLEEPP---- 136 (334)
T ss_dssp TTEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGB----------CHHHHHHHHHHHTSCC----
T ss_pred CCEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhc----------CHHHHHHHHHHhcCCC----
Confidence 233332210 011223345566555444433456789999999988 3356778888887632
Q ss_pred CCCeEEEEEEcCCCCccCHHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHH
Q 013506 159 SVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEA 235 (441)
Q Consensus 159 ~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 235 (441)
+++++|.+++.+..+.+.+++ |+. .+.|++|+.++..+++.... .. .+..+..++..+.|. .+.+..
T Consensus 137 --~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~-~r~a~~ 203 (334)
T 1a5t_A 137 --AETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS-PGAALA 203 (334)
T ss_dssp --TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC-HHHHHH
T ss_pred --CCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC-HHHHHH
Confidence 257888888888999999998 885 79999999999999988765 11 222356667666654 343333
No 112
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.49 E-value=1.7e-14 Score=134.27 Aligned_cols=131 Identities=22% Similarity=0.262 Sum_probs=79.0
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCC-CCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccCc
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGI-SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGE 367 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g~ 367 (441)
..++|++++++.+...+..+..+......+.. .++.++||+||||||||++|+++|..++.+++.++++.+.+ .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 45789999999998877554333222222221 24678999999999999999999999999999999999988 49995
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeE
Q 013506 368 -SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVI 430 (441)
Q Consensus 368 -~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v 430 (441)
.+..++.+|..+... +++||++.+... ......++++++||++||++.+...|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~------~~~~~e~rvl~~LL~~~dg~~~~~~v 148 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVEN 148 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC----------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc------chhhHHHHHHHHHHHHhhcccccccc
Confidence 799999999998654 458998876422 23345689999999999999877665
No 113
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=2.9e-13 Score=128.97 Aligned_cols=161 Identities=18% Similarity=0.198 Sum_probs=97.0
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccCccc-ccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVH-KAHVG 95 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~--~~~~v~~~~~~-~~~~~ 95 (441)
..++|++++++.+...+.. +.++||+||||||||++|++++..++. ++..+++.... ....+
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4688999999888776533 468999999999999999999998843 44444443210 11011
Q ss_pred c-hHHHH--HHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC----CCCCCeEEEEEE
Q 013506 96 E-SEKAL--REAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS----KTSVPHVVVVAS 168 (441)
Q Consensus 96 ~-~~~~~--~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~vi~~ 168 (441)
. ..... ...+....... ...++||||||++.+ +...+..|+..++..... ....+..++|++
T Consensus 87 ~~~~~~~~~~g~~~~~~~g~-l~~~~IL~IDEI~r~----------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 87 PLSIQALKDEGRYERLTSGY-LPEAEIVFLDEIWKA----------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp CBC----------CBCCTTS-GGGCSEEEEESGGGC----------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred cccHHHHhhchhHHhhhccC-CCcceeeeHHhHhhh----------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 0 00000 01111000000 003569999999876 346778888888643211 111122245666
Q ss_pred cCCCC---ccCHHHhhCCccceEEEecCCCH-HHHHHHHHHHh
Q 013506 169 TNRVD---AIDPALRRSGRFDAEVEVTVPTA-EERFEILKLYT 207 (441)
Q Consensus 169 ~~~~~---~l~~~l~~~~r~~~~i~~~~p~~-~~~~~il~~~~ 207 (441)
||++. ...+++.+ ||...+.+++|+. +++..|+....
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 67532 24468888 9988899999987 67788887543
No 114
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.49 E-value=2e-13 Score=122.96 Aligned_cols=194 Identities=17% Similarity=0.200 Sum_probs=118.2
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc-
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV- 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~- 94 (441)
++++|.+...+.+.+.+... .....+++|+||||||||++|++++... +.+++.+++..+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 46899999988888877542 1345789999999999999999999865 46788888876532110
Q ss_pred ----cc----hHH---HHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CC
Q 013506 95 ----GE----SEK---ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KT 158 (441)
Q Consensus 95 ----~~----~~~---~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 158 (441)
+. ... .....+..+ .+++|||||++.+. ...+..|+..++..... ..
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~----------~~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDIS----------PLMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCC----------HHHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhc-------CCCEEEEeccccCC----------HHHHHHHHHHHhcCEeeecCCccc
Confidence 00 000 000112221 25799999999873 34567778877754311 11
Q ss_pred CCCeEEEEEEcCCC-------CccCHHHhhCCccc-eEEEecCCC--HHHHHHHHHHHhcc----CCC---CCc-ccHHH
Q 013506 159 SVPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPT--AEERFEILKLYTKK----VPL---DAN-VDLEA 220 (441)
Q Consensus 159 ~~~~~~vi~~~~~~-------~~l~~~l~~~~r~~-~~i~~~~p~--~~~~~~il~~~~~~----~~~---~~~-~~~~~ 220 (441)
...++.+|++||.. ..+.+.+.. |+. ..+.+|++. .++...++..++.. ... ..+ ..+..
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 12357888888875 235677777 774 346666665 34555555544332 221 111 22455
Q ss_pred HHHHCCCCCHHHHHHHHHHHHH
Q 013506 221 IATSCNGYVGADLEALCREATM 242 (441)
Q Consensus 221 l~~~~~g~~~~~i~~l~~~a~~ 242 (441)
+.......+.+++.++++.+..
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHHHHH
Confidence 5555545567788888877664
No 115
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=7.7e-13 Score=118.54 Aligned_cols=146 Identities=14% Similarity=0.172 Sum_probs=107.6
Q ss_pred chHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEccCccccccccc
Q 013506 23 GNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC------GAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 23 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l------~~~~~~v~~~~~~~~~~~~ 96 (441)
|++++.+.|.+.+... ...++||+||||+|||++++.+++.+ ...+..+++... ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 6788888888877541 14689999999999999999999864 335666765420 12
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID 176 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~ 176 (441)
....++.+.+.+......++..|+||||+|.+ .....+.|+..++... +++++|.+|+.+..+.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~l----------t~~a~naLLk~LEep~------~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERM----------TQQAANAFLKALEEPP------EYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB----------CHHHHHHTHHHHHSCC------TTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHh----------CHHHHHHHHHHHhCCC------CCeEEEEEECChHhCh
Confidence 23346666666655444455789999999988 3356788999998643 2577777788888999
Q ss_pred HHHhhCCccceEEEecCCCHHHHHHHHHHHh
Q 013506 177 PALRRSGRFDAEVEVTVPTAEERFEILKLYT 207 (441)
Q Consensus 177 ~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~ 207 (441)
+.+++ | .+.|++++.++..+++...+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 7 68999999999999988776
No 116
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.48 E-value=8.7e-14 Score=126.54 Aligned_cols=132 Identities=25% Similarity=0.343 Sum_probs=90.5
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhc-CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-hccCch
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRL-GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS-MYVGES 368 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~-~~~g~~ 368 (441)
.+.|++.+++.+...+............. ...++.+++|+||||||||++|+++|..++.+++.++++++.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 46788888888877665321111100000 1134568999999999999999999999999999999998876 466543
Q ss_pred -HHHHHHHHHHH-----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCC
Q 013506 369 -EALLRNTFQRA-----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGL 424 (441)
Q Consensus 369 -~~~~~~~~~~a-----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~ 424 (441)
...++.++..+ ....++||||||+|++.+.+... +.+.....+.+.|++.|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~ 155 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGS 155 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCC
Confidence 34566666532 11235699999999998765432 23333455689999999974
No 117
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.48 E-value=1.2e-13 Score=110.06 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=85.9
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccc
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGE 96 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~ 96 (441)
+++|.....+.+.+.+... ...+.+++|+||||||||++|++++... +.+++ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5788888888888776431 1345789999999999999999999876 56788 888765543
Q ss_pred hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC---
Q 013506 97 SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--- 173 (441)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~--- 173 (441)
......+..+ .+++|||||+|.+ +...+..++..+..... ++.+|+++|.+-
T Consensus 66 --~~~~~~~~~a-------~~g~l~ldei~~l----------~~~~q~~Ll~~l~~~~~------~~~~I~~t~~~~~~~ 120 (145)
T 3n70_A 66 --PQLNDFIALA-------QGGTLVLSHPEHL----------TREQQYHLVQLQSQEHR------PFRLIGIGDTSLVEL 120 (145)
T ss_dssp --SCHHHHHHHH-------TTSCEEEECGGGS----------CHHHHHHHHHHHHSSSC------SSCEEEEESSCHHHH
T ss_pred --hhhhcHHHHc-------CCcEEEEcChHHC----------CHHHHHHHHHHHhhcCC------CEEEEEECCcCHHHH
Confidence 1122333333 2579999999988 33556677777744322 356777787642
Q ss_pred ----ccCHHHhhCCccc-eEEEecC
Q 013506 174 ----AIDPALRRSGRFD-AEVEVTV 193 (441)
Q Consensus 174 ----~l~~~l~~~~r~~-~~i~~~~ 193 (441)
.+.+.+.. |+. ..+.+|+
T Consensus 121 ~~~~~~~~~L~~--rl~~~~i~lPp 143 (145)
T 3n70_A 121 AASNHIIAELYY--CFAMTQIACLP 143 (145)
T ss_dssp HHHSCCCHHHHH--HHHHHEEECCC
T ss_pred HHcCCCCHHHHH--HhcCCEEeCCC
Confidence 34455544 443 2455555
No 118
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.45 E-value=6.6e-14 Score=136.04 Aligned_cols=120 Identities=24% Similarity=0.312 Sum_probs=78.3
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhh-----
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYS----- 362 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~----- 362 (441)
...++.|++++++.+.+.+..... ... .++.+++|+|||||||||+|+++|..++.++..++......
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~------~~~-~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKL------TKS-LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHH------SSS-CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHh------ccc-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 345688999999888765532110 111 15678999999999999999999999999999888765433
Q ss_pred ----hccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 363 ----MYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 363 ----~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
.|+|.....+...|..+...+| |+||||+|++.+.+.+ ...+.||+.||...
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~----------~~~~~LL~~ld~~~ 207 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG----------DPSSAMLEVLDPEQ 207 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTT
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc----------CHHHHHHHHHhhhh
Confidence 5677777778888888765555 9999999999865432 24677888887543
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.44 E-value=6.2e-14 Score=111.51 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHH
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEK 99 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~ 99 (441)
+++|.+..++.+.+.+.... ..+.+++|+||||||||++|++++.... +++.+++..+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999888888775421 2457899999999999999999998877 88888887654322
Q ss_pred HHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC-Cc----
Q 013506 100 ALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV-DA---- 174 (441)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~-~~---- 174 (441)
....+..+ .+++|||||++.+. ...+..++..++... ..++.+|+++|.. ..
T Consensus 67 -~~~~~~~a-------~~~~l~lDei~~l~----------~~~q~~Ll~~l~~~~-----~~~~~iI~~tn~~~~~~~~~ 123 (143)
T 3co5_A 67 -PMELLQKA-------EGGVLYVGDIAQYS----------RNIQTGITFIIGKAE-----RCRVRVIASCSYAAGSDGIS 123 (143)
T ss_dssp -HHHHHHHT-------TTSEEEEEECTTCC----------HHHHHHHHHHHHHHT-----TTTCEEEEEEEECTTTC--C
T ss_pred -hhhHHHhC-------CCCeEEEeChHHCC----------HHHHHHHHHHHHhCC-----CCCEEEEEecCCCHHHHHhC
Confidence 22333322 25799999999873 245666777776532 1135677777653 33
Q ss_pred cCHHHhhCCccc-eEEEecCC
Q 013506 175 IDPALRRSGRFD-AEVEVTVP 194 (441)
Q Consensus 175 l~~~l~~~~r~~-~~i~~~~p 194 (441)
+.+.+.. |+. ..+.+|+.
T Consensus 124 ~~~~L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHH--HSSSEEEEECCC
T ss_pred ccHHHHH--HhcCcEEeCCCC
Confidence 3445554 543 34666653
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.43 E-value=1.2e-12 Score=109.50 Aligned_cols=128 Identities=17% Similarity=0.195 Sum_probs=87.7
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~~ 357 (441)
.+.++.|.+...+.+.+.+.. ....+++|+||||||||++|+.++..+ +.+++.++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 455667776665655555432 335689999999999999999999987 778888888
Q ss_pred hhhhh--hccCchHHHHHHHHHHHHhc-CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 358 AELYS--MYVGESEALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 358 ~~~~~--~~~g~~~~~~~~~~~~a~~~-~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
..+.. .+.+.....++.++..+... .+.+|||||++.+.+.+.... ....+.+.|+..++. ...++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-----~~~~~~~~l~~~~~~---~~~~ii~~ 158 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-----GALDAGNILKPMLAR---GELRCIGA 158 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-----TSCCTHHHHHHHHHT---TCSCEEEE
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-----cchHHHHHHHHHHhc---CCeeEEEe
Confidence 77653 35566677788888887654 678999999999986554211 113445555555542 33455555
Q ss_pred ee
Q 013506 435 SF 436 (441)
Q Consensus 435 ~~ 436 (441)
+|
T Consensus 159 ~~ 160 (187)
T 2p65_A 159 TT 160 (187)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 121
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=4e-14 Score=138.71 Aligned_cols=169 Identities=20% Similarity=0.204 Sum_probs=100.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEc----cCccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVIS----PHSVHKAHV 94 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~----~~~~~~~~~ 94 (441)
..++|++.+|+.+...+... .........+....++||+||||||||++|+++++.++...+... +..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46899999888775433211 000000011233348999999999999999999998876544321 111111111
Q ss_pred cchHH-H---HHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-------CCCCCeE
Q 013506 95 GESEK-A---LREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-------KTSVPHV 163 (441)
Q Consensus 95 ~~~~~-~---~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~ 163 (441)
..... . ....+..+ .++++||||+|.+.+ ..+..|+..++..... .....++
T Consensus 373 ~~~~~g~~~~~~G~l~~A-------~~gil~IDEid~l~~----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA-------DGGIAVIDEIDKMRD----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SGGGTSSCSEEECHHHHH-------SSSEECCTTTTCCCS----------HHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred eccccccccccCCeeEec-------CCCcEEeehhhhCCH----------hHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 10000 0 00011111 257999999998732 4567788888754321 1112357
Q ss_pred EEEEEcCCCC-------------ccCHHHhhCCccce-EEEecCCCHHHHHHHHHHHhcc
Q 013506 164 VVVASTNRVD-------------AIDPALRRSGRFDA-EVEVTVPTAEERFEILKLYTKK 209 (441)
Q Consensus 164 ~vi~~~~~~~-------------~l~~~l~~~~r~~~-~i~~~~p~~~~~~~il~~~~~~ 209 (441)
.+|+|+|+.. .+++++.+ ||+. .+..+.|+.+ ...|.++.+..
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 8999999986 88999999 9974 4555666666 77777766654
No 122
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.40 E-value=1.1e-11 Score=138.32 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=89.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRR 132 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~ 132 (441)
..+..+.||+|||||++++.+|+.++.+++.++|.+-.+ ...+..+|..+... +.+.++||||.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-----GaW~cfDEfNrl~~-- 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-----GAWGCFDEFNRLEE-- 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-----TCEEEEETTTSSCH--
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-----CcEEEehhhhcCCH--
Confidence 345779999999999999999999999999999876332 23455555554433 78999999998732
Q ss_pred CCCchhhHHHHHHHHH-------HHhcC--------CCCCCCCCeEEEEEEcCCC----CccCHHHhhCCccceEEEecC
Q 013506 133 DHRREQDVRIASQLFT-------LMDSN--------KPSKTSVPHVVVVASTNRV----DAIDPALRRSGRFDAEVEVTV 193 (441)
Q Consensus 133 ~~~~~~~~~~~~~l~~-------~~~~~--------~~~~~~~~~~~vi~~~~~~----~~l~~~l~~~~r~~~~i~~~~ 193 (441)
+++..+.. .+... .....-.+.+.+++|+|+- .++++.++. +|- .+.+..
T Consensus 671 --------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~ 739 (3245)
T 3vkg_A 671 --------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIK 739 (3245)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCS
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeC
Confidence 22222222 11111 1111233567888899863 479999998 884 799999
Q ss_pred CCHHHHHHHHH
Q 013506 194 PTAEERFEILK 204 (441)
Q Consensus 194 p~~~~~~~il~ 204 (441)
|+.+...+|+-
T Consensus 740 Pd~~~i~ei~L 750 (3245)
T 3vkg_A 740 PDREMIAQVML 750 (3245)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999888864
No 123
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.40 E-value=3.6e-12 Score=107.13 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=74.2
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEech
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSG 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~~ 357 (441)
.++++.|.+...+.+.+.+.. ..+.+++|+||||||||++|+.++..+ +.+++.++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 455667777666666555432 335679999999999999999999986 678888888
Q ss_pred hhhh--hhccCchHHHHHHHHHHHH-hcCCeEEEEeccccccccc
Q 013506 358 AELY--SMYVGESEALLRNTFQRAR-LAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 358 ~~~~--~~~~g~~~~~~~~~~~~a~-~~~~~vl~iDE~d~~~~~r 399 (441)
.++. ..+.+.....++.++..+. ...+.+|||||+|.+.+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~ 131 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAG 131 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccC
Confidence 8776 3456667778888888764 3557799999999998654
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.36 E-value=6.5e-13 Score=105.57 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=66.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSS 403 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~ 403 (441)
..+++|+||||||||++|++++.... +++.++++++...+ ...++..+. .+++||||+|.+.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~------ 89 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSR------ 89 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCH------
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCH------
Confidence 45799999999999999999999887 89999988765533 345566543 45999999999853
Q ss_pred CCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 404 STSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 404 ~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
.....|+..|+.-...+..+|++||.
T Consensus 90 --------~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 90 --------NIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------HHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------HHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 33455666676544555667777764
No 125
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.36 E-value=4.3e-12 Score=118.27 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=86.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC--ceEEechhhhhhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAELYSM 363 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~~i~~~~~~~~ 363 (441)
...++++.|.+..++.+....... ..+..++.++||+||||||||++|+++|..++. +++.+++..+++.
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred CcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 344888999998888766544321 124455678999999999999999999999975 6777776664443
Q ss_pred ccCc-------------------------------------------------hHHHHHHHHHHHHh-----c----CCe
Q 013506 364 YVGE-------------------------------------------------SEALLRNTFQRARL-----A----APS 385 (441)
Q Consensus 364 ~~g~-------------------------------------------------~~~~~~~~~~~a~~-----~----~~~ 385 (441)
+.+. ....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 3222 23445555544432 1 157
Q ss_pred EEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 386 IIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 386 vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
||||||+|.+. ....+.|++.++.... .+++++++
T Consensus 192 vl~IDEi~~l~--------------~~~~~~L~~~le~~~~--~~~ii~t~ 226 (368)
T 3uk6_A 192 VLFIDEVHMLD--------------IESFSFLNRALESDMA--PVLIMATN 226 (368)
T ss_dssp EEEEESGGGSB--------------HHHHHHHHHHTTCTTC--CEEEEEES
T ss_pred eEEEhhccccC--------------hHHHHHHHHHhhCcCC--Ceeeeecc
Confidence 99999999884 3668899999986443 35666664
No 126
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.32 E-value=6.8e-11 Score=127.40 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=75.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----ccC------------chHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----YVG------------ESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~----~~g------------~~~~~~~~~~~~a~ 380 (441)
+++++.+++++||||||||++|.+++... |..+..++..+.... ..| ..+...+-+....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 57788899999999999999999887644 666666666553222 111 12222232333334
Q ss_pred hcCCeEEEEecccccccccCCC---CCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 381 LAAPSIIFFDEADVVGAKRGGS---SSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
...+++|++|++..+.+.+... ++..-+...|.+..+|..|.+...+..++++.+|.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~ 1216 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1216 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 5678999999999997754321 22233455677777666666655556666666664
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=5.4e-12 Score=100.48 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAKR 399 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r 399 (441)
.+.+++|+||||||||++|++++... +.+++ ++++.+.+. ......+..+. .++|||||+|.+.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~-- 90 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTR-- 90 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCH--
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCH--
Confidence 34579999999999999999999987 67888 888776543 22344555553 35999999998853
Q ss_pred CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 400 GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.....|+..|..... +..+|++||
T Consensus 91 ------------~~q~~Ll~~l~~~~~-~~~~I~~t~ 114 (145)
T 3n70_A 91 ------------EQQYHLVQLQSQEHR-PFRLIGIGD 114 (145)
T ss_dssp ------------HHHHHHHHHHHSSSC-SSCEEEEES
T ss_pred ------------HHHHHHHHHHhhcCC-CEEEEEECC
Confidence 345667777754333 344556665
No 128
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.30 E-value=1.1e-11 Score=117.09 Aligned_cols=112 Identities=27% Similarity=0.395 Sum_probs=76.9
Q ss_pred cccccccCchhHH---HHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhh
Q 013506 287 VTWEDIGGLRDLK---KKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSM 363 (441)
Q Consensus 287 ~~~~~i~g~~~~k---~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~ 363 (441)
..++++.|++.+. ..+...+.. + ...+++|+||||||||++|++++..++.+++.++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~---- 85 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT---- 85 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----
Confidence 4577788888777 556555542 1 1247999999999999999999999999999888633
Q ss_pred ccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 364 YVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
...+.++.++..+. ...+.+|||||++.+.. ...+.||..|+. ..+++|.+|
T Consensus 86 ---~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------------~~q~~LL~~le~---~~v~lI~at 141 (447)
T 3pvs_A 86 ---SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------------SQQDAFLPHIED---GTITFIGAT 141 (447)
T ss_dssp ---CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT---TSCEEEEEE
T ss_pred ---CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------------HHHHHHHHHHhc---CceEEEecC
Confidence 23445666666654 34678999999999853 234668888874 334444444
No 129
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.29 E-value=1.3e-11 Score=113.51 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=81.3
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...++++.|.+..++.+...+..... .-.+..+++|+||||||||++|+++|..++.+++.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 34688899999999888887764211 123456799999999999999999999999999999886642
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 366 GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
....+..++.. ...+++|||||++.+. ....+.|+..|+...
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~ 134 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYR 134 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhcc
Confidence 22334444443 3567799999999985 255677888887643
No 130
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.26 E-value=4.1e-11 Score=118.36 Aligned_cols=49 Identities=33% Similarity=0.436 Sum_probs=42.7
Q ss_pred cccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 16 KAEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 16 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
..+++++|++.+++.+...+. .+.+++|+|||||||||+++++++.+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 677999999999998887764 3468999999999999999999998753
No 131
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=3e-12 Score=124.15 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=88.9
Q ss_pred CccccccccCchhHHHHHHHHHhcccCC-chhhhhcC---CCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 285 PKVTWEDIGGLRDLKKKLQQAVEWPIKH-STAFSRLG---ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 285 ~~~~~~~i~g~~~~k~~l~~~~~~~~~~-~~~~~~~~---~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
....++++.|.+...+.+..++...... ...+...+ ..+..+++|+||||||||++|+++|..++.+++.+++++.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~ 113 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV 113 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 3446888999999999888887642111 01111112 2245689999999999999999999999999999999886
Q ss_pred hhhccCchH-------HHHHHHHHHH-----HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCC
Q 013506 361 YSMYVGESE-------ALLRNTFQRA-----RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAK 428 (441)
Q Consensus 361 ~~~~~g~~~-------~~~~~~~~~a-----~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 428 (441)
.+.+..... ..+..+|..+ ....++||||||+|.+.... ...++.|++.++. ...
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~~ 180 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TST 180 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CSS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cCC
Confidence 553321110 0022233333 22567899999999997421 1235667766663 334
Q ss_pred eEEEEeee
Q 013506 429 VIIYPISF 436 (441)
Q Consensus 429 ~v~~~~~~ 436 (441)
.+|+++++
T Consensus 181 ~iIli~~~ 188 (516)
T 1sxj_A 181 PLILICNE 188 (516)
T ss_dssp CEEEEESC
T ss_pred CEEEEEcC
Confidence 46666554
No 132
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.26 E-value=1.8e-11 Score=111.24 Aligned_cols=127 Identities=21% Similarity=0.279 Sum_probs=81.9
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM---- 363 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~---- 363 (441)
.+.|...+.+.+...+....... .-...|..+++|+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 45677777777776664321110 1122345689999999999999999999988 456888887764321
Q ss_pred -cc-------CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCC---------
Q 013506 364 -YV-------GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQ--------- 426 (441)
Q Consensus 364 -~~-------g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~--------- 426 (441)
++ +.... ..+.......+.+++||||+|++. ..+.+.|++.|+...-
T Consensus 94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~~ 157 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTVD 157 (311)
T ss_dssp HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEEE
T ss_pred HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEEE
Confidence 11 11110 123333344566899999999984 2667888888875331
Q ss_pred -CCeEEEEeeee
Q 013506 427 -AKVIIYPISFI 437 (441)
Q Consensus 427 -~~~v~~~~~~~ 437 (441)
...++|++||.
T Consensus 158 ~~~~iiI~ttn~ 169 (311)
T 4fcw_A 158 FRNTVIIMTSNL 169 (311)
T ss_dssp CTTEEEEEEEST
T ss_pred CCCcEEEEeccc
Confidence 25667777775
No 133
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.24 E-value=2.8e-11 Score=110.52 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
.+.+++|+||||||||++|++++..+ +.+++.+++.++...+.+.........|.... ..+++|||||++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccC
Confidence 34679999999999999999999988 88999999988866555444332223333333 3467999999999863
No 134
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.23 E-value=3.9e-11 Score=107.17 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=70.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEechhhhhhh----------c------cCchHHHHHHH
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLSGAELYSM----------Y------VGESEALLRNT 375 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~~~~~~~~----------~------~g~~~~~~~~~ 375 (441)
.++.+++++||||||||++++.++..+ ...++.+++..+.+. . .+++.+.++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999988 346778887553321 2 23356778888
Q ss_pred HHHH--HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 376 FQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 376 ~~~a--~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
|... ....+.|+||||+|.+. .+.++-.|+.+.+. .....++|+.+|
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~~-~~s~~~vI~i~n 171 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWISS-KNSKLSIICVGG 171 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHHC-SSCCEEEEEECC
T ss_pred HHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhcccc-cCCcEEEEEEec
Confidence 8875 34567899999999996 13677778876643 333344444444
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.21 E-value=6.2e-11 Score=108.26 Aligned_cols=118 Identities=21% Similarity=0.184 Sum_probs=84.6
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhcc
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYV 365 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~ 365 (441)
...++++.|.+.+.+.+..++.. + ..+..+|++||||||||++|+++|..++.+++.+++++.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~----- 84 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC----- 84 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----
Confidence 34678889999988888887762 1 223456788889999999999999999999999998662
Q ss_pred CchHHHHHHHHHHHHhc-----CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 366 GESEALLRNTFQRARLA-----APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 366 g~~~~~~~~~~~~a~~~-----~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+ ...++..+...... .+.++||||+|.+.+ ....+.|++.|+.... ..++|+++|
T Consensus 85 ~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~~~-~~~iI~~~n 144 (324)
T 3u61_B 85 K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAYSS-NCSIIITAN 144 (324)
T ss_dssp C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHHGG-GCEEEEEES
T ss_pred C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhCCC-CcEEEEEeC
Confidence 1 34455544443222 567999999998851 2456788888876543 345555665
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.20 E-value=6.2e-10 Score=105.26 Aligned_cols=208 Identities=15% Similarity=0.158 Sum_probs=122.6
Q ss_pred ccccchHHHHHHHHHHH-HhhccCchHHHhcCC-CCCcEEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEEc
Q 013506 19 EAIGGNRAAVEALRELI-TFPLLYSSQAQKLGL-KWPRGLLL--YGPPGTGKTSLVRAVVREC---------GAHLTVIS 85 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~~vll--~Gp~GtGKT~l~~~l~~~l---------~~~~~~v~ 85 (441)
+.++|.++..+.|.+.+ ..... +. ..+..++| +||+|+|||++++.+++.+ +..+++++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 67999999999999887 43111 00 13568999 9999999999999998876 34566776
Q ss_pred cCcccccc----------------ccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHH
Q 013506 86 PHSVHKAH----------------VGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTL 149 (441)
Q Consensus 86 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~ 149 (441)
+....... .+.....+...+..... ..+++.+|+|||++.+..... .....+..++..
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~llvlDe~~~l~~~~~----~~~~~l~~l~~~ 167 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY--VENHYLLVILDEFQSMLSSPR----IAAEDLYTLLRV 167 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHH--HHTCEEEEEEESTHHHHSCTT----SCHHHHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH--hcCCeEEEEEeCHHHHhhccC----cchHHHHHHHHH
Confidence 53211100 01001111111111111 124578999999998843210 022455555565
Q ss_pred HhcCCCCCCCCCeEEEEEEcCCCC---ccC---HHHhhCCccceEEEecCCCHHHHHHHHHHHhccCCC---CCcccHHH
Q 013506 150 MDSNKPSKTSVPHVVVVASTNRVD---AID---PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVPL---DANVDLEA 220 (441)
Q Consensus 150 ~~~~~~~~~~~~~~~vi~~~~~~~---~l~---~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~~---~~~~~~~~ 220 (441)
+....... ...++.+|++++.+. .++ +.+.+ ++...+.+++++.++..+++...+..... ..+..+..
T Consensus 168 ~~~~~~~~-~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 168 HEEIPSRD-GVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HHHSCCTT-SCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHhcccCC-CCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 55432100 013577887776554 334 55666 56555999999999999999876543211 12223666
Q ss_pred HHHHCC------CCCHHHHHHHHHHHHHHH
Q 013506 221 IATSCN------GYVGADLEALCREATMSA 244 (441)
Q Consensus 221 l~~~~~------g~~~~~i~~l~~~a~~~~ 244 (441)
+...+. | +++.+..+++.+...+
T Consensus 245 i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 245 ISDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 777777 5 4666667766655444
No 137
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.16 E-value=4.3e-11 Score=114.35 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=65.0
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc----------CCceEEec
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA----------EASFFSLS 356 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~----------~~~~~~i~ 356 (441)
..++++.|.+...+.+...+.. ....++||+||||||||++|+.+|..+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3567788888777776666542 334589999999999999999999986 77888888
Q ss_pred hhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEe
Q 013506 357 GAELYSMYVGESEALLRNTFQRARLAAPSIIFFD 390 (441)
Q Consensus 357 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iD 390 (441)
++ ..|.|+++..++.+|..+....+.|||||
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 87 67888998999999999988888999999
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.14 E-value=2.4e-10 Score=107.11 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=84.1
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCceEEechhhh
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAEL 360 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~---------~~~~~~i~~~~~ 360 (441)
+.+.|.+...+.+...+...+. ...+.+++|+||||||||++++.++..+ +..++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 4567777777777665543211 1345689999999999999999999988 778888887643
Q ss_pred hhh----------------ccCchH-HHHHHHHHHHHh-cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 361 YSM----------------YVGESE-ALLRNTFQRARL-AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 361 ~~~----------------~~g~~~-~~~~~~~~~a~~-~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.+. +.+.+. ..+..++..... ..+++|||||++.+...+ ....++..++..++
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQ 160 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchh
Confidence 221 112222 334555555433 347799999999996432 13467888888887
Q ss_pred CCC-CCCeEEEEeeee
Q 013506 423 GLE-QAKVIIYPISFI 437 (441)
Q Consensus 423 ~~~-~~~~v~~~~~~~ 437 (441)
..+ ....++|++||-
T Consensus 161 ~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNS 176 (387)
T ss_dssp CC-----CEEEEECSC
T ss_pred hcCCCceEEEEEEECC
Confidence 665 556666666654
No 139
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.14 E-value=1.7e-10 Score=109.32 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=66.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~ 398 (441)
+.+++|+||||||||++|++++..+ +.+++.+++.++...+.+.........|.......+.+|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4579999999999999999999988 78889999888765444332222122344333336789999999998632
Q ss_pred cCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 399 r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+ ...+.|+..++.....+..+|++|+
T Consensus 210 ~------------~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 210 T------------GVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp H------------HHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred h------------HHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 1 1223444444433344556666665
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=2.3e-10 Score=98.38 Aligned_cols=116 Identities=24% Similarity=0.320 Sum_probs=74.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~ 361 (441)
..+.++.|.+...+.+...+.. ....+++|+||+|||||++++.++..+ ...++.++.++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT
T ss_pred CCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc
Confidence 3566778888888888777653 122359999999999999999999876 3446666654432
Q ss_pred hhccCchHHHHHHHHHHHH------hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 362 SMYVGESEALLRNTFQRAR------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
+ ...+...+.... ...+.+|||||++.+.+ ...+.|++.++.... ..++|+++
T Consensus 81 ~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~~~-~~~~i~~~ 139 (226)
T 2chg_A 81 G------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMYSK-SCRFILSC 139 (226)
T ss_dssp C------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHTTT-TEEEEEEE
T ss_pred C------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhcCC-CCeEEEEe
Confidence 2 122222222221 25678999999999853 335667777775433 44555555
Q ss_pred e
Q 013506 436 F 436 (441)
Q Consensus 436 ~ 436 (441)
|
T Consensus 140 ~ 140 (226)
T 2chg_A 140 N 140 (226)
T ss_dssp S
T ss_pred C
Confidence 5
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.11 E-value=2.3e-10 Score=104.46 Aligned_cols=107 Identities=29% Similarity=0.385 Sum_probs=74.3
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCc
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE 367 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~ 367 (441)
.++++.|.+...+.+...+..... ...+..+++|+||||||||++|++++..++.+++.++++.+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----- 76 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----
Confidence 567788888888877776653210 1123467999999999999999999999999998888766422
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 368 SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
...+...+..+ ...+++|||||++.+.+ ...+.|+..|+.
T Consensus 77 -~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~ 116 (324)
T 1hqc_A 77 -PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMED 116 (324)
T ss_dssp -HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHH
T ss_pred -hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHh
Confidence 22333333321 24567999999998852 335666666664
No 142
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=7.9e-10 Score=98.98 Aligned_cols=93 Identities=6% Similarity=0.077 Sum_probs=66.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc------CCceEEechhhhhhhccCchHHHHHHHHHHHHhc----CCeEEEEecccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA------EASFFSLSGAELYSMYVGESEALLRNTFQRARLA----APSIIFFDEADV 394 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~------~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~----~~~vl~iDE~d~ 394 (441)
.++||+||||+|||++|+++|..+ ..+++.++.++ .....+.++.+.+.+... ...|+||||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 478999999999999999999863 34666666532 012345678888888543 347999999999
Q ss_pred cccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 395 VGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 395 ~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+. ....+.||+.|+..+...++|+++++
T Consensus 94 lt--------------~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 94 MT--------------QQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp BC--------------HHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred hC--------------HHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 84 35579999999975544444444433
No 143
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.08 E-value=1.4e-10 Score=102.55 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=71.0
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC---CceEEechhhhhhh-
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAELYSM- 363 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~~~~~- 363 (441)
+++.+.|.....+.+.+.+.... ..+.+++|+||||||||++|++++..+. .+++.++++++...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 34556666655555554443211 1235799999999999999999999875 67999998775321
Q ss_pred ----ccCchHH-------HHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC-------
Q 013506 364 ----YVGESEA-------LLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE------- 425 (441)
Q Consensus 364 ----~~g~~~~-------~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~------- 425 (441)
..|.... .....+.. ...++|||||++.+.+ .+.+.|++.|+.-.
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCCc
Confidence 1111000 00112332 2356999999999853 44567777776421
Q ss_pred ---CCCeEEEEeeee
Q 013506 426 ---QAKVIIYPISFI 437 (441)
Q Consensus 426 ---~~~~v~~~~~~~ 437 (441)
..+..+|++||.
T Consensus 136 ~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 136 QPLQVNVRLVCATNA 150 (265)
T ss_dssp -CEECCCEEEEEESS
T ss_pred ccccCCeEEEEecCc
Confidence 234566666664
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.08 E-value=1e-09 Score=102.84 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=83.2
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc------CCceEEechhhhhh-
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA------EASFFSLSGAELYS- 362 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~------~~~~~~i~~~~~~~- 362 (441)
+.+.|.+...+.+...+...+. ...+.+++++||+|||||++++.++..+ +..++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 4567777666666665442111 1345679999999999999999999988 78888888754321
Q ss_pred -----h----------ccCch-HHHHHHHHHHHHhc-CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 363 -----M----------YVGES-EALLRNTFQRARLA-APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 363 -----~----------~~g~~-~~~~~~~~~~a~~~-~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
. ..+.+ ......++...... .+.+|||||++.+...++ ..++..|+..++...
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEVN 160 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhcC
Confidence 1 11222 23344555554433 388999999999874321 256888888887765
Q ss_pred CCCeEEEEeee
Q 013506 426 QAKVIIYPISF 436 (441)
Q Consensus 426 ~~~~v~~~~~~ 436 (441)
....++|++++
T Consensus 161 ~~~~~~I~~~~ 171 (386)
T 2qby_A 161 KSKISFIGITN 171 (386)
T ss_dssp C--EEEEEEES
T ss_pred CCeEEEEEEEC
Confidence 55566666665
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.07 E-value=2.5e-10 Score=94.54 Aligned_cols=63 Identities=21% Similarity=0.330 Sum_probs=42.0
Q ss_pred cccccccc----hHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccC
Q 013506 16 KAEEAIGG----NRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPH 87 (441)
Q Consensus 16 ~~~~~i~G----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----~~~~~~v~~~ 87 (441)
.+|++.++ ++.+++.+.+++. ++.+..+.+++|+|||||||||+++++++.+ +..++.++..
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 35667665 4444444444443 2334457899999999999999999999877 4455555543
Q ss_pred c
Q 013506 88 S 88 (441)
Q Consensus 88 ~ 88 (441)
+
T Consensus 77 ~ 77 (180)
T 3ec2_A 77 D 77 (180)
T ss_dssp H
T ss_pred H
Confidence 3
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=1.7e-10 Score=106.66 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=75.5
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcC------CceEEechhh
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAE------ASFFSLSGAE 359 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~------~~~~~i~~~~ 359 (441)
...+.++.|.+.+.+.+...+.. ....+++|+||||||||++|++++..++ ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34577888988888887776542 1123599999999999999999999864 3567777665
Q ss_pred hhhhccCchHHHHHHHHHH------------HHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCC
Q 013506 360 LYSMYVGESEALLRNTFQR------------ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQA 427 (441)
Q Consensus 360 ~~~~~~g~~~~~~~~~~~~------------a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 427 (441)
..+ ++...+.+...... .....+.|+||||++.+.+ ...+.|++.|+.....
T Consensus 100 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le~~~~~ 163 (353)
T 1sxj_D 100 ERG--ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTMETYSGV 163 (353)
T ss_dssp CCC--HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTTTT
T ss_pred ccc--hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHHhcCCC
Confidence 321 11111111111110 0013456999999998853 3457788888876555
Q ss_pred CeEEEEe
Q 013506 428 KVIIYPI 434 (441)
Q Consensus 428 ~~v~~~~ 434 (441)
.++|+++
T Consensus 164 ~~~il~~ 170 (353)
T 1sxj_D 164 TRFCLIC 170 (353)
T ss_dssp EEEEEEE
T ss_pred ceEEEEe
Confidence 4444443
No 147
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.07 E-value=1.7e-10 Score=95.62 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=64.8
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhhhhccCchHH-HHHHHHHHHHhcCCeEEEEeccccc
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYVGESEA-LLRNTFQRARLAAPSIIFFDEADVV 395 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~~~~~g~~~~-~~~~~~~~a~~~~~~vl~iDE~d~~ 395 (441)
..++.+++|+|||||||||++++++..+ +..++.++..++...+...... ....+++.. ..+.+|+|||++..
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 3446789999999999999999999877 5677777777765543211111 011222222 35679999999854
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 396 GAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 396 ~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
. .+......+..++... ...+..+|++||.
T Consensus 113 ~---------~~~~~~~~l~~ll~~~---~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 113 R---------LSDWQRELISYIITYR---YNNLKSTIITTNY 142 (180)
T ss_dssp C---------CCHHHHHHHHHHHHHH---HHTTCEEEEECCC
T ss_pred c---------CCHHHHHHHHHHHHHH---HHcCCCEEEEcCC
Confidence 2 1233445555555554 2345667777775
No 148
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=5.9e-10 Score=101.88 Aligned_cols=120 Identities=26% Similarity=0.314 Sum_probs=77.0
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----ceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-----~~~~i~~~~~~ 361 (441)
..+.++.|.+.+.+.+...+.. + ...+++|+||||||||++|+.++..+.. .++.+++++..
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 4577788998888888877653 1 2236999999999999999999998632 36666665543
Q ss_pred hhccCchHHHHHHHHHHH--HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 362 SMYVGESEALLRNTFQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a--~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+ .......+....... ....+.++||||+|.+.+ ...+.|++.|+.... ..++|+++|
T Consensus 89 ~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~~~-~~~~i~~~~ 148 (327)
T 1iqp_A 89 G--INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMFSS-NVRFILSCN 148 (327)
T ss_dssp H--HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHTTT-TEEEEEEES
T ss_pred c--hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhcCC-CCeEEEEeC
Confidence 2 111112222221110 114578999999998842 446788888886444 444555554
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.04 E-value=3e-10 Score=102.09 Aligned_cols=97 Identities=21% Similarity=0.319 Sum_probs=64.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh-------------ccCchHHHHHHHHHHHHhcCCeE
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPSI 386 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~~~v 386 (441)
...++||+|+||||||++|++++... +.+++.++++.+... |.|... .....|..+. .++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~ 99 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEAD---GGT 99 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHHT---TSE
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhcC---CCE
Confidence 35579999999999999999999976 567888887654321 111111 1223455443 359
Q ss_pred EEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC----------CCCeEEEEeeee
Q 013506 387 IFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE----------QAKVIIYPISFI 437 (441)
Q Consensus 387 l~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~v~~~~~~~ 437 (441)
|||||++.+.+ .+...|+..|+... ..+..||++||-
T Consensus 100 L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 100 LFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp EEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred EEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 99999999853 45677888887643 234566666663
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=8.1e-10 Score=100.78 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=78.9
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~ 361 (441)
..+.++.|.+...+.+...+.. + ...+++|+||+|+|||++|+.++..+ ...++.++.++..
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-----------G--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-----------C--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 3567788888888888877652 1 12349999999999999999999986 3346666665432
Q ss_pred hhccCchHHHHHHHHHHHH-------hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 362 SMYVGESEALLRNTFQRAR-------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~-------~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
....++.++.... ...+.++||||+|.+.. ...+.|++.++.... ..++|++
T Consensus 85 ------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~~-~~~~il~ 143 (323)
T 1sxj_B 85 ------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELYSN-STRFAFA 143 (323)
T ss_dssp ------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHTTT-TEEEEEE
T ss_pred ------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhccCC-CceEEEE
Confidence 1344555555544 33478999999999852 346778888876444 4445555
Q ss_pred ee
Q 013506 435 SF 436 (441)
Q Consensus 435 ~~ 436 (441)
+|
T Consensus 144 ~~ 145 (323)
T 1sxj_B 144 CN 145 (323)
T ss_dssp ES
T ss_pred eC
Confidence 44
No 151
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=3.1e-10 Score=90.36 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDAL 128 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l 128 (441)
++..++|+||+|+|||++++++++.+ +...++++..++... ....++.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------------------GGGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------------------HHHhCCCEEEEeCcccc
Confidence 56789999999999999999999987 555777777665433 00123789999999865
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.03 E-value=3.2e-10 Score=103.26 Aligned_cols=120 Identities=23% Similarity=0.298 Sum_probs=78.0
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~ 361 (441)
..+.++.|.+...+.+...+.. ....+++|+||||||||++|+.++..+ +.+++.++.++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 4577788888888777665432 122359999999999999999999986 3356777776643
Q ss_pred hhccCchHHHHHHHHHHH--HhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 362 SMYVGESEALLRNTFQRA--RLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a--~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+ .......+....... ....+.|+||||+|.+.+ ...+.|++.|+.... ..++|+++|
T Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~~~-~~~~i~~~~ 140 (319)
T 2chq_A 81 G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMYSK-SCRFILSCN 140 (319)
T ss_dssp C--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSSSS-SEEEEEEES
T ss_pred C--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhcCC-CCeEEEEeC
Confidence 3 222222222222111 124578999999999842 456788888887544 445555554
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.02 E-value=4.9e-10 Score=97.83 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=75.7
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEech----------
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG---------- 357 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~---------- 357 (441)
.+.++.|.+...+.+...+.. + ..+..++|+||+|+|||++++.++..+.........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 466778888888877776642 1 123468999999999999999999877542110000
Q ss_pred ------hhhhhhc--cCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 358 ------AELYSMY--VGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 358 ------~~~~~~~--~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
.+++... .......++.++..+. ...+.+|||||++.+. ....+.|++.++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLKTLEEPP 154 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHHHHHHHSCC
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHHHHHHhcCC
Confidence 0001000 0122345666666543 2346899999999873 245788888888653
Q ss_pred CCCeEEEEeee
Q 013506 426 QAKVIIYPISF 436 (441)
Q Consensus 426 ~~~~v~~~~~~ 436 (441)
...++|++|+
T Consensus 155 -~~~~~i~~t~ 164 (250)
T 1njg_A 155 -EHVKFLLATT 164 (250)
T ss_dssp -TTEEEEEEES
T ss_pred -CceEEEEEeC
Confidence 3455555554
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.02 E-value=2.5e-10 Score=108.85 Aligned_cols=98 Identities=23% Similarity=0.325 Sum_probs=59.1
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCC--ceEEe-----chhhhhhhccCchHHHHHHHHHHHHhc---CCeEEEEeccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSL-----SGAELYSMYVGESEALLRNTFQRARLA---APSIIFFDEAD 393 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~~i-----~~~~~~~~~~g~~~~~~~~~~~~a~~~---~~~vl~iDE~d 393 (441)
+.++||+||||||||++|+++|..++. ++..+ ..+++++.+.+...... ..|..+..+ .++|+||||++
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~-g~~~~~~~g~l~~~~IL~IDEI~ 119 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE-GRYERLTSGYLPEAEIVFLDEIW 119 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGG
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhc-hhHHhhhccCCCcceeeeHHhHh
Confidence 458999999999999999999998853 22222 22445443333222111 223222222 46699999998
Q ss_pred ccccccCCCCCCCcchhhHHHHHHHHHhcC---------CCCCCeEEEEeee
Q 013506 394 VVGAKRGGSSSTSITVGERLLSTLLTEMDG---------LEQAKVIIYPISF 436 (441)
Q Consensus 394 ~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~v~~~~~~ 436 (441)
++. ..+.+.|+..|+. ......++|+|||
T Consensus 120 r~~--------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN 157 (500)
T 3nbx_X 120 KAG--------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASN 157 (500)
T ss_dssp GCC--------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEES
T ss_pred hhc--------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccc
Confidence 763 3667889988863 1223346688887
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.01 E-value=1e-09 Score=102.23 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=76.6
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCc----------------
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEAS---------------- 351 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~---------------- 351 (441)
.+.++.|.+...+.+...+.. + ..+..++|+||+|||||++|+.++..+.+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 466788888888888776642 1 122357999999999999999999988642
Q ss_pred --------eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHH
Q 013506 352 --------FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (441)
Q Consensus 352 --------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~ 419 (441)
++.++.... .....++.++..+. ...+.|+||||+|.+. ....+.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~Ll~ 141 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLK 141 (373)
T ss_dssp HHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHHHH
T ss_pred HhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHHHH
Confidence 222222110 11223556666654 2346799999999884 245788999
Q ss_pred HhcCCCCCCeEEEEeee
Q 013506 420 EMDGLEQAKVIIYPISF 436 (441)
Q Consensus 420 ~l~~~~~~~~v~~~~~~ 436 (441)
.++.... ..++|++++
T Consensus 142 ~le~~~~-~~~~Il~~~ 157 (373)
T 1jr3_A 142 TLEEPPE-HVKFLLATT 157 (373)
T ss_dssp HHHSCCS-SEEEEEEES
T ss_pred HHhcCCC-ceEEEEEeC
Confidence 9987544 455555554
No 156
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=7.6e-10 Score=101.62 Aligned_cols=116 Identities=19% Similarity=0.258 Sum_probs=76.4
Q ss_pred cccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC-----ceEEechhhhh
Q 013506 287 VTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA-----SFFSLSGAELY 361 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~-----~~~~i~~~~~~ 361 (441)
..+.++.|.+.+.+.+...+.. +. ..|++|+|||||||||+|+++|..+.. .+..++.++..
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------GK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------TC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------CC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 4567778888888877776652 21 125999999999999999999998743 35556655422
Q ss_pred hhccCchHHHHHHHHHHHH------hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 362 SMYVGESEALLRNTFQRAR------LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 362 ~~~~g~~~~~~~~~~~~a~------~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
+ ...++....... ...+.|+++||+|.+.. ...+.|++.|+..... .++++++
T Consensus 89 ~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~~~-~~~il~~ 147 (340)
T 1sxj_C 89 G------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYTKN-TRFCVLA 147 (340)
T ss_dssp S------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTTTT-EEEEEEE
T ss_pred c------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCCCC-eEEEEEe
Confidence 1 223333333322 12367999999998842 4467888888875544 4555555
Q ss_pred e
Q 013506 436 F 436 (441)
Q Consensus 436 ~ 436 (441)
|
T Consensus 148 n 148 (340)
T 1sxj_C 148 N 148 (340)
T ss_dssp S
T ss_pred c
Confidence 5
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.99 E-value=1.9e-09 Score=100.97 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=66.1
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc-----------CCceEEechh
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA-----------EASFFSLSGA 358 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----------~~~~~~i~~~ 358 (441)
+++.|.+...+.+...+..... ...+.+++|+||||||||++|+.++..+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 4567777777777666543211 1334589999999999999999999987 8889999876
Q ss_pred hhh-hh-----------------ccCch-HHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 359 ELY-SM-----------------YVGES-EALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 359 ~~~-~~-----------------~~g~~-~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
+.. +. +.+.+ ...+..++..+... +.+|||||+|.+..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~ 147 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVK 147 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhcc
Confidence 543 11 01221 23345555544433 34999999999864
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.97 E-value=1.3e-09 Score=94.99 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC---CceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
.+.+++|+||||||||++|+.++..+. ..++.++..++...+.. .+.. ...+.+|||||++.+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVA 117 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEecccccc
Confidence 456899999999999999999998774 67888888776553321 1111 1446799999999885
No 159
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.96 E-value=3.5e-08 Score=90.95 Aligned_cols=191 Identities=21% Similarity=0.196 Sum_probs=108.9
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcccc-----
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHK----- 91 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~----- 91 (441)
..+.++|.++..+.|.+.+.. +..++++||+|+|||++++.+++..+ .+++++.....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 336799999999999987743 25899999999999999999998875 55665432210
Q ss_pred c----------cccc---------------------hHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhH
Q 013506 92 A----------HVGE---------------------SEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDV 140 (441)
Q Consensus 92 ~----------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~ 140 (441)
. .... .......++...........+.+|+|||++.+..... ....
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---~~~~ 149 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---RGGK 149 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT---TTTH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc---cchh
Confidence 0 0000 0001112222211111111288999999998743100 0122
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC---------HHHhhCCccceEEEecCCCHHHHHHHHHHHhccCC
Q 013506 141 RIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID---------PALRRSGRFDAEVEVTVPTAEERFEILKLYTKKVP 211 (441)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~---------~~l~~~~r~~~~i~~~~p~~~~~~~il~~~~~~~~ 211 (441)
.....+...++... ++.+|.++.....+. ..+. +|+...+.+++.+.++..+++...+....
T Consensus 150 ~~~~~L~~~~~~~~-------~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 150 ELLALFAYAYDSLP-------NLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHHHHCT-------TEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhcC-------CeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 34444444444421 345555544321111 1122 25555899999999999999987665443
Q ss_pred CC-CcccHHHHHHHCCCCCHHHHHHHH
Q 013506 212 LD-ANVDLEAIATSCNGYVGADLEALC 237 (441)
Q Consensus 212 ~~-~~~~~~~l~~~~~g~~~~~i~~l~ 237 (441)
.. .......+...+.|+. ..+..+.
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 32 2234566777777753 4454443
No 160
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=7e-10 Score=88.26 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
++..++|+||+|+|||+++++++..+ |...+.++..++... +....+.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 56679999999999999999999988 666778887766542 112356799999999764
No 161
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.93 E-value=5e-10 Score=98.88 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=68.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEech--hhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG--AELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~--~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
++.++..++++||||||||++|..+|...+.++..++. .+..+.+..+.++.++.+++...... +|||||++.+.+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 55566678999999999999999999875555333333 33334344455666666766665443 999999999876
Q ss_pred ccCCCCCCCcchhhHHHHHHHHHhcCCCC-CCeEEEEeeee
Q 013506 398 KRGGSSSTSITVGERLLSTLLTEMDGLEQ-AKVIIYPISFI 437 (441)
Q Consensus 398 ~r~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~v~~~~~~~ 437 (441)
.+.+.+ ..+...+.+..+|..|+++.. .+..+++++|.
T Consensus 197 ~~~~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 197 AAGGNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cccccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 543211 111224556666666665544 34555666664
No 162
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=4.5e-09 Score=97.14 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=36.2
Q ss_pred cccccccCchhHHHHHHHHH-hcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 287 VTWEDIGGLRDLKKKLQQAV-EWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 287 ~~~~~i~g~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
..++++.|.+.+.+.+...+ .. + ...|++|+||||+||||+++++++.+
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~-----------~--~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQP-----------R--DLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCT-----------T--CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHHHhhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35677888887777666554 21 1 22349999999999999999999943
No 163
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.93 E-value=2e-09 Score=99.34 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=38.1
Q ss_pred ccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 286 KVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 286 ~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
...|+++.|.+.+++.+...... ....++||+||||||||++|++++..++.
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 44677888888776654332211 12346999999999999999999998863
No 164
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.92 E-value=2.9e-09 Score=97.23 Aligned_cols=94 Identities=11% Similarity=0.182 Sum_probs=63.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCce------------------------EEechhhhhhhccCchHHHHHHHHHHHH
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASF------------------------FSLSGAELYSMYVGESEALLRNTFQRAR 380 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~------------------------~~i~~~~~~~~~~g~~~~~~~~~~~~a~ 380 (441)
..+||+||+|+|||++|+.+|+.+.+.. +.+...+- + ..-..+.++.+.+.+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTEKLN 101 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHHHTT
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876432 22222100 0 1123456777877764
Q ss_pred h----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 L----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
. +.+.|++|||+|.+. ....+.||+.|+..+. ..++|+.||
T Consensus 102 ~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEep~~-~~~~Il~t~ 146 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEEPPA-ETWFFLATR 146 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTSCCT-TEEEEEEES
T ss_pred hccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcCCCC-CeEEEEEeC
Confidence 3 346799999999984 2557899999997444 455555544
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.91 E-value=1.2e-08 Score=95.46 Aligned_cols=124 Identities=16% Similarity=0.158 Sum_probs=78.3
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCc--eEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhhh-
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVR--GALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYS- 362 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~--~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~~- 362 (441)
+.+.|.+...+.+...+..... + ..+. +++|+||||||||++++.++..+ +..++.+++.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 4567777777777666543211 1 2233 79999999999999999999988 56778887544321
Q ss_pred -----h---c-------cCch-HHHHHHHHHHHH-hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCC
Q 013506 363 -----M---Y-------VGES-EALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLE 425 (441)
Q Consensus 363 -----~---~-------~g~~-~~~~~~~~~~a~-~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~ 425 (441)
. . .+.. ......+..... ...+.+|||||++.+. ...+..|+..++...
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------------PDILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------------HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------------hHHHHHHHHHHHhCC
Confidence 0 0 1112 222222322222 2457899999999881 356788888887665
Q ss_pred C---CCeEEEEeee
Q 013506 426 Q---AKVIIYPISF 436 (441)
Q Consensus 426 ~---~~~v~~~~~~ 436 (441)
. ....+|+++|
T Consensus 154 ~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 154 KLGAFRIALVIVGH 167 (389)
T ss_dssp HHSSCCEEEEEEES
T ss_pred CCCcCCEEEEEEEC
Confidence 4 4555665554
No 166
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.90 E-value=3.1e-09 Score=97.24 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=64.6
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechh------hhhhh
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA------ELYSM 363 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~------~~~~~ 363 (441)
..+.|.+.+++.+...+.. +.+++|+||||||||++|+++|..++.+++.++.+ ++.+.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred cceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 4566777777666554431 35899999999999999999999999998887763 22222
Q ss_pred ccCchHHHHHHHHHHHHhcC---CeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 364 YVGESEALLRNTFQRARLAA---PSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 364 ~~g~~~~~~~~~~~~a~~~~---~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
....... ..|. .... .+|+||||++.+. ....+.|++.|+.
T Consensus 92 ~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~ 135 (331)
T 2r44_A 92 MIYNQHK---GNFE--VKKGPVFSNFILADEVNRSP--------------AKVQSALLECMQE 135 (331)
T ss_dssp EEEETTT---TEEE--EEECTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHH
T ss_pred eeecCCC---CceE--eccCcccccEEEEEccccCC--------------HHHHHHHHHHHhc
Confidence 1100000 0000 0111 2699999999874 2456777777774
No 167
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.87 E-value=6.5e-09 Score=101.55 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.++..+.|+||+|+||||+++.+++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4567899999999999999999999865
No 168
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.85 E-value=7.1e-09 Score=95.88 Aligned_cols=217 Identities=17% Similarity=0.115 Sum_probs=117.7
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEccCc-----cccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAV-VRECGAHLTVISPHS-----VHKA 92 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l-~~~l~~~~~~v~~~~-----~~~~ 92 (441)
..|.|++.+|..|.-.+..... + ....-|+||.|+||| ||.+++.+ +..+.... ++.... +...
T Consensus 213 apI~G~e~vK~aLll~L~GG~~--k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s 282 (506)
T 3f8t_A 213 APLPGAEEVGKMLALQLFSCVG--K------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAV 282 (506)
T ss_dssp CCSTTCHHHHHHHHHHHTTCCS--S------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEE
T ss_pred cccCCCHHHHHHHHHHHcCCcc--c------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEE
Confidence 3488999888887765532100 0 111238999999999 99999999 76654433 222110 1000
Q ss_pred cccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCC---CCCCeEEEEEEc
Q 013506 93 HVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSK---TSVPHVVVVAST 169 (441)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~vi~~~ 169 (441)
.... .. +..-..........+||+||++.+ +...+..|+..|+...... .-..++.+++|+
T Consensus 283 -~r~~----tG-~~~~~G~l~LAdgGvl~lDEIn~~----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 283 -LKED----RG-WALRAGAAVLADGGILAVDHLEGA----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp -EEES----SS-EEEEECHHHHTTTSEEEEECCTTC----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred -EEcC----CC-cccCCCeeEEcCCCeeehHhhhhC----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 0000 00 000000000113579999999977 4467788888887532111 112357899999
Q ss_pred CCCC-----------ccCHHHhhCCccceEEE-ecCCCH-------------HHHHHHHHHHhc--cCCCCCccc-----
Q 013506 170 NRVD-----------AIDPALRRSGRFDAEVE-VTVPTA-------------EERFEILKLYTK--KVPLDANVD----- 217 (441)
Q Consensus 170 ~~~~-----------~l~~~l~~~~r~~~~i~-~~~p~~-------------~~~~~il~~~~~--~~~~~~~~~----- 217 (441)
|+.+ .+++++++ ||+..+. ...|+. +...+++. +.+ .........
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI 423 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRL 423 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHH
Confidence 9875 78899999 9975443 333332 22332222 222 111111111
Q ss_pred ------HHHHHH-------HCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhc
Q 013506 218 ------LEAIAT-------SCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVV 272 (441)
Q Consensus 218 ------~~~l~~-------~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 272 (441)
.+.-.. ...+.+++.+..+++.+...+..+..+ .++.+|+..+..-+
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~--------~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD--------DVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS--------EECHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC--------CCCHHHHHHHHHHH
Confidence 111000 234678888888888887777666544 46677776665533
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=1.2e-07 Score=87.57 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=107.6
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccc---cccc
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVH---KAHV 94 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~---~~~~ 94 (441)
.+.++|.++..+.|.+ +.. ..++|+||+|+|||++++.+++......+++++.... ....
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred HHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 3679999999998887 521 4799999999999999999999887777777765421 0000
Q ss_pred cchH-------------------------------------------HHHHHHHHHHHhhhhcCCCeEEEEccccccccC
Q 013506 95 GESE-------------------------------------------KALREAFSQASSHALSGKPSVVFIDEIDALCPR 131 (441)
Q Consensus 95 ~~~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~ 131 (441)
.... ..+..++....... . ++.+|+|||++.+...
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS-K-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC-S-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC-C-CCeEEEEECHHHhhcc
Confidence 0000 01122222221111 1 3889999999987542
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccC---------HHHhhCCccceEEEecCCCHHHHHHH
Q 013506 132 RDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAID---------PALRRSGRFDAEVEVTVPTAEERFEI 202 (441)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~---------~~l~~~~r~~~~i~~~~p~~~~~~~i 202 (441)
... .....+...++... ++.+|.+++....+. ..+. +|+...+.+++++.++..++
T Consensus 153 ~~~------~~~~~l~~~~~~~~-------~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 153 RGV------NLLPALAYAYDNLK-------RIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp TTC------CCHHHHHHHHHHCT-------TEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHH
T ss_pred Cch------hHHHHHHHHHHcCC-------CeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHH
Confidence 111 12233333333321 345555554322111 1122 25556899999999999999
Q ss_pred HHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHH
Q 013506 203 LKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCR 238 (441)
Q Consensus 203 l~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 238 (441)
+...+.......+ ....+...+.|+. ..+..+..
T Consensus 218 l~~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHH
Confidence 9876543332222 2377777787754 44544433
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.81 E-value=5.3e-08 Score=88.87 Aligned_cols=93 Identities=28% Similarity=0.378 Sum_probs=61.3
Q ss_pred ccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCc
Q 013506 288 TWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGE 367 (441)
Q Consensus 288 ~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~ 367 (441)
.++...|.+.+.+.+...+..... .-.++.+++|+|||||||||+++++|..++.++...+++.+.
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------ 88 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------ 88 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------
Confidence 455566666666666655432100 113446799999999999999999999999887666554322
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEecccccc
Q 013506 368 SEALLRNTFQRARLAAPSIIFFDEADVVG 396 (441)
Q Consensus 368 ~~~~~~~~~~~a~~~~~~vl~iDE~d~~~ 396 (441)
...++..++.. ....+|+|+||++.+.
T Consensus 89 ~~~~l~~~~~~--~~~~~v~~iDE~~~l~ 115 (334)
T 1in4_A 89 KQGDMAAILTS--LERGDVLFIDEIHRLN 115 (334)
T ss_dssp SHHHHHHHHHH--CCTTCEEEEETGGGCC
T ss_pred CHHHHHHHHHH--ccCCCEEEEcchhhcC
Confidence 12334444432 2345799999999886
No 171
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.80 E-value=1.5e-07 Score=91.41 Aligned_cols=108 Identities=15% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhh----hhh------------------hc----c--Cch
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE----LYS------------------MY----V--GES 368 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~----~~~------------------~~----~--g~~ 368 (441)
++.++..++++||||+||||+++.++... |..++.+...+ +.. .+ . -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 66778889999999999999999998765 33333332211 000 00 0 023
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEee
Q 013506 369 EALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPIS 435 (441)
Q Consensus 369 ~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~ 435 (441)
.+..+.++..+....|.+|++|=+-.+... . .+....+.+..|+..+.. ....|++++.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~----~~~~~~~~i~~ll~~l~~--~g~tvilvsh 415 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG--V----SNNAFRQFVIGVTGYAKQ--EEITGLFTNT 415 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS--S----CHHHHHHHHHHHHHHHHH--TTCEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh--C----ChHHHHHHHHHHHHHHHh--CCCEEEEEEC
Confidence 456677888888889999999944444321 1 111145566677777752 2334444443
No 172
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.79 E-value=3.9e-08 Score=91.49 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=110.8
Q ss_pred ccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEccCcccccccc
Q 013506 19 EAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---AHLTVISPHSVHKAHVG 95 (441)
Q Consensus 19 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---~~~~~v~~~~~~~~~~~ 95 (441)
..++|.....+.+.+.+... .....+++++|++||||+++++.+..... .+++.+++..+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~- 204 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF- 204 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH-
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH-
Confidence 45666665555555544321 12456799999999999999999987653 6899999876532110
Q ss_pred chHHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCC-----CCCCC
Q 013506 96 ESEKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNK-----PSKTS 159 (441)
Q Consensus 96 ~~~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~ 159 (441)
-..+|.... .......++.||+||++.+ +...+..|+..++... .....
T Consensus 205 -----~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 205 -----EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL----------SLEAQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp -----HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC----------CHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred -----HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC----------CHHHHHHHHHHHhcCcEEeCCCCcee
Confidence 111221100 0000123579999999988 4467788888877532 11111
Q ss_pred CCeEEEEEEcCCC-------CccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhc----cCCCC-Cccc---HHHH
Q 013506 160 VPHVVVVASTNRV-------DAIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTK----KVPLD-ANVD---LEAI 221 (441)
Q Consensus 160 ~~~~~vi~~~~~~-------~~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~----~~~~~-~~~~---~~~l 221 (441)
..++.+|++||.. ..+.+.+.. |+. ..+.+|+... ++...++..++. ..... ...+ +..+
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2357788988863 234455444 443 3455555532 444444444432 22222 1122 4444
Q ss_pred HHHCCCCCHHHHHHHHHHHHHH
Q 013506 222 ATSCNGYVGADLEALCREATMS 243 (441)
Q Consensus 222 ~~~~~g~~~~~i~~l~~~a~~~ 243 (441)
.......+.++++++++.++..
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHh
Confidence 4444445667888888877653
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.79 E-value=6.8e-09 Score=87.63 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=58.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhccCch-HHHHHHHHHHHHhcCCeEEEEecccccccccC
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVVGAKRG 400 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~ 400 (441)
.+++|+||||||||++|++++..+ +.+++.++.+++...+.... ...+..++.... .+.+|||||++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~~~-- 130 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEAMS-- 130 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCcCC--
Confidence 689999999999999999999887 56777788777654322111 011222333332 2349999999765421
Q ss_pred CCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 401 GSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 401 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
......++..++...- .....+|++||.
T Consensus 131 ------~~~~~~ll~~~l~~~~---~~~~~~i~tsn~ 158 (202)
T 2w58_A 131 ------SWVRDDVFGPILQYRM---FENLPTFFTSNF 158 (202)
T ss_dssp ------CCGGGTTHHHHHHHHH---HTTCCEEEEESS
T ss_pred ------HHHHHHHHHHHHHHHH---hCCCCEEEEcCC
Confidence 1112234554554331 223457777763
No 174
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.74 E-value=2.1e-08 Score=88.59 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=46.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc--CccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEcccc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP--HSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEID 126 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~ 126 (441)
|++++..++|+||||||||+++..++...+.++.+++. .+....+.......+..+.+.... .+ ++|||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-----~~-LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-----HR-VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-----CS-EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-----CC-EEEEeccc
Confidence 45566778999999999999999998765544334433 222222222333333333333322 13 99999999
Q ss_pred ccccC
Q 013506 127 ALCPR 131 (441)
Q Consensus 127 ~l~~~ 131 (441)
.+.+.
T Consensus 193 aL~~~ 197 (331)
T 2vhj_A 193 NVIGA 197 (331)
T ss_dssp TTC--
T ss_pred ccccc
Confidence 88543
No 175
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.73 E-value=1.9e-09 Score=105.75 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=64.7
Q ss_pred ccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEe----chhhhhhhcc
Q 013506 290 EDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL----SGAELYSMYV 365 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i----~~~~~~~~~~ 365 (441)
..+.|++.+++.+...+... ..........+...|+||+||||||||++|+++|..++...+.. ...++.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 34677777776653322211 00000001223344899999999999999999999987655432 2222222111
Q ss_pred -----CchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 366 -----GESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 366 -----g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|..... ...+..| ..+|+||||+|++.+ ...+.|+..|+.
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~--------------~~q~~Ll~~le~ 417 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRD--------------EDRVAIHEAMEQ 417 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCS--------------HHHHHHHHHHHS
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhCCH--------------hHhhhhHHHHhC
Confidence 111000 0122222 345999999999853 456888888875
No 176
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.73 E-value=2.6e-08 Score=82.96 Aligned_cols=127 Identities=15% Similarity=0.253 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH--------hC-CcEEEEccCccccccc----------cchHH--HHHHHHHHHHhhhh
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRE--------CG-AHLTVISPHSVHKAHV----------GESEK--ALREAFSQASSHAL 113 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~--------l~-~~~~~v~~~~~~~~~~----------~~~~~--~~~~~~~~~~~~~~ 113 (441)
..+++|+||||||+++...+.. .+ .+++..+...+..... ..... .....+ ... ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~-~~~-~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMY-EWI-KKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHH-HHT-TSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHH-HHh-hcc
Confidence 5799999999999998876433 23 5565666554432211 00000 001111 110 012
Q ss_pred cCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecC
Q 013506 114 SGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV 193 (441)
Q Consensus 114 ~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~ 193 (441)
.+++.+|+|||++.+.+......+.. .++..+.... ...+.+|.+++++..++..++. |+...+++..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~-----rll~~l~~~r-----~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~ 152 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIP-----ENVQWLNTHR-----HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIAS 152 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCC-----HHHHGGGGTT-----TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEE
T ss_pred ccCceEEEEEChhhhccCccccchhH-----HHHHHHHhcC-----cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcC
Confidence 24578999999999875442211111 2334443322 1135667777788999999988 9988888877
Q ss_pred CC
Q 013506 194 PT 195 (441)
Q Consensus 194 p~ 195 (441)
+.
T Consensus 153 ~~ 154 (199)
T 2r2a_A 153 NK 154 (199)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.73 E-value=2.9e-08 Score=83.69 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSV 89 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~ 89 (441)
.+++|+||+|||||+++++++..+ +.+++.+++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 789999999999999999999887 456666666543
No 178
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.71 E-value=9.2e-08 Score=78.51 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~ 81 (441)
++..++++|+||||||||++|.++++.+...+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45567899999999999999999999986543
No 179
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.69 E-value=6.6e-08 Score=89.15 Aligned_cols=194 Identities=18% Similarity=0.258 Sum_probs=109.5
Q ss_pred cccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEccCccccccccch
Q 013506 20 AIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAH--LTVISPHSVHKAHVGES 97 (441)
Q Consensus 20 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~--~~~v~~~~~~~~~~~~~ 97 (441)
.++|.......+.+.+... . ....+++++|++||||+.+++.+....+.. ++.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~--- 195 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELA--- 195 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTH---
T ss_pred cccccchHHHHHHhhhhhh-------h----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHH---
Confidence 4666666555555544221 0 234679999999999999999998776543 89999987643221
Q ss_pred HHHHHHHHHHHH-----------hhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCC-----CCCCC
Q 013506 98 EKALREAFSQAS-----------SHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPS-----KTSVP 161 (441)
Q Consensus 98 ~~~~~~~~~~~~-----------~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~ 161 (441)
. ..+|.... .......++.||+||++.| +...+..|+..++..... .....
T Consensus 196 ~---~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 196 E---SELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL----------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp H---HHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGS----------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred H---HHhcCccccccCCcccccCChHhhcCCCeEEecChhhC----------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 1 11111000 0000113568999999988 446788888888753211 11122
Q ss_pred eEEEEEEcCCCC-------ccCHHHhhCCccc-eEEEecCCCH--HHHHHHHHHHhcc----CCCC-Cccc---HHHHHH
Q 013506 162 HVVVVASTNRVD-------AIDPALRRSGRFD-AEVEVTVPTA--EERFEILKLYTKK----VPLD-ANVD---LEAIAT 223 (441)
Q Consensus 162 ~~~vi~~~~~~~-------~l~~~l~~~~r~~-~~i~~~~p~~--~~~~~il~~~~~~----~~~~-~~~~---~~~l~~ 223 (441)
++.+|++||..- .+.+.+.. |+. ..+.+|+... ++...++..++.. .... ...+ ++.+..
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHT
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 467888888631 33445544 444 2466777655 4555555444332 2221 1122 344444
Q ss_pred HCCCCCHHHHHHHHHHHHH
Q 013506 224 SCNGYVGADLEALCREATM 242 (441)
Q Consensus 224 ~~~g~~~~~i~~l~~~a~~ 242 (441)
....-+.++++++++.+..
T Consensus 341 ~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 341 QEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp CCCTTHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 4444566777777776653
No 180
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.63 E-value=2.1e-08 Score=90.07 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=58.7
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhhhhccCch-HHHHHHHHHHHHhcCCeEEEEecccccccc
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELYSMYVGES-EALLRNTFQRARLAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~ 398 (441)
..+++|+||||||||++|+++|..+ +.+++.+..+++...+.... ...+..++... ....+|||||++.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~~~ 229 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQAT 229 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 5689999999999999999999855 46777788777655432211 11122233332 23459999999765321
Q ss_pred cCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 399 RGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 399 r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
......++..++...- .....+|++||.
T Consensus 230 --------~~~~~~ll~~ll~~r~---~~~~~~IitSN~ 257 (308)
T 2qgz_A 230 --------SWVRDEVLQVILQYRM---LEELPTFFTSNY 257 (308)
T ss_dssp ----------CTTTTHHHHHHHHH---HHTCCEEEEESS
T ss_pred --------HHHHHHHHHHHHHHHH---HCCCcEEEECCC
Confidence 0111234555554431 123467888874
No 181
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.56 E-value=9.8e-08 Score=79.48 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=59.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc--------C-CceEEechhhhhhhcc----------Cch-----HHHHHHHHHHHHh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA--------E-ASFFSLSGAELYSMYV----------GES-----EALLRNTFQRARL 381 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~--------~-~~~~~i~~~~~~~~~~----------g~~-----~~~~~~~~~~a~~ 381 (441)
..+++|+||||||++|..++... | .+++..+..++...++ ..+ ...+...+..+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP-E 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-G
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-c
Confidence 57899999999999988765442 3 4454444443321111 111 12222222112 3
Q ss_pred cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 382 AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 382 ~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...+||+|||++.+++.|.... + . ..+|..++..+..+.-||+.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~----e-~----~rll~~l~~~r~~~~~iil~tq 131 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS----K-I----PENVQWLNTHRHQGIDIFVLTQ 131 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC----C-C----CHHHHGGGGTTTTTCEEEEEES
T ss_pred cCceEEEEEChhhhccCccccc----h-h----HHHHHHHHhcCcCCeEEEEECC
Confidence 4577999999999987664211 1 0 2477788877777766666554
No 182
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.56 E-value=9.3e-08 Score=85.92 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=30.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEccCcc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECG----AHLTVISPHSV 89 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~----~~~~~v~~~~~ 89 (441)
+.+++|+||||||||+++++++..+. .++..+++..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 57999999999999999999988654 56666665543
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.55 E-value=5e-07 Score=85.17 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=73.3
Q ss_pred ccccCchhHHHHHHHHH-hcccCCchhhhhcCCCCCceEEE--ECCCCCcHHHHHHHHHHHc---------CCceEEech
Q 013506 290 EDIGGLRDLKKKLQQAV-EWPIKHSTAFSRLGISPVRGALL--HGPPGCSKTTLAKAAAHAA---------EASFFSLSG 357 (441)
Q Consensus 290 ~~i~g~~~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~ll--~Gp~GtGKTtla~~la~~~---------~~~~~~i~~ 357 (441)
..+.|.+...+.+...+ ...... ....+.++++ +||+|+|||++++.++..+ +..++.+++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~-------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG-------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS-------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC-------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 44566666666666555 321111 0023457888 9999999999999999876 445666665
Q ss_pred hhh------hhhc---c-------CchH-HHHHHHHHHHH-hcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHH
Q 013506 358 AEL------YSMY---V-------GESE-ALLRNTFQRAR-LAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLT 419 (441)
Q Consensus 358 ~~~------~~~~---~-------g~~~-~~~~~~~~~a~-~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~ 419 (441)
... +... + +.+. .....+..... ...+.+|+|||++.+...++ ....++..|+.
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~~ 166 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTLLR 166 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHHHH
Confidence 321 1110 0 1111 22223332222 24578999999999864211 02356666777
Q ss_pred HhcCCC--C--CCeEEEEeee
Q 013506 420 EMDGLE--Q--AKVIIYPISF 436 (441)
Q Consensus 420 ~l~~~~--~--~~~v~~~~~~ 436 (441)
.++... + ...++|++++
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVAS 187 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEE
T ss_pred HHHhcccCCCCceEEEEEEec
Confidence 776544 3 3444554554
No 184
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.52 E-value=3.7e-07 Score=90.11 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=40.9
Q ss_pred cCccccccccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 284 IPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 284 ~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
.+...+.++.|...+.+.+...+. .+.+++|+|||||||||+|++++..+..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344567788888888777766554 2357999999999999999999998853
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.49 E-value=1.2e-06 Score=71.76 Aligned_cols=25 Identities=40% Similarity=0.816 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
.+.|+||+|+||||+++.+++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998753
No 186
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.49 E-value=6.4e-07 Score=62.15 Aligned_cols=74 Identities=34% Similarity=0.532 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhh
Q 013506 192 TVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSV 271 (441)
Q Consensus 192 ~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 271 (441)
|.|+.++|.+||+.++.......+.++..++..+.||++.+|..+++++...++++.. ..++.+|+..++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------VHVTQEDFEMAVAK 72 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHH
Confidence 6899999999999999998887888999999999999999999999999999988743 35888888877765
Q ss_pred cc
Q 013506 272 VG 273 (441)
Q Consensus 272 ~~ 273 (441)
..
T Consensus 73 v~ 74 (78)
T 3kw6_A 73 VM 74 (78)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 187
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.48 E-value=9.1e-07 Score=72.44 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
++.|+||||+||||+++.++..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998753
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.48 E-value=1.2e-07 Score=77.79 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.+...+++|+||||||||++|.++|..+...++.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 4445679999999999999999999998765543
No 189
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.48 E-value=4.5e-07 Score=63.90 Aligned_cols=76 Identities=33% Similarity=0.513 Sum_probs=66.8
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhh
Q 013506 191 VTVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARS 270 (441)
Q Consensus 191 ~~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 270 (441)
-.+|+.++|.+||+.++++.....+++++.++..+.||++.+|..+|++|...++++.. ..++.+||..++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~--------~~I~~~df~~Al~ 79 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------VHVTQEDFEMAVA 79 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHH
Confidence 46899999999999999998887888999999999999999999999999999888752 4688899988877
Q ss_pred hccc
Q 013506 271 VVGP 274 (441)
Q Consensus 271 ~~~~ 274 (441)
...+
T Consensus 80 ~v~p 83 (86)
T 2krk_A 80 KVMQ 83 (86)
T ss_dssp HHHC
T ss_pred HHcc
Confidence 6654
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.37 E-value=1.3e-06 Score=79.32 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh-------------c---cCchHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM-------------Y---VGESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~-------------~---~g~~~~~~~~~~~~a~ 380 (441)
|++++.-++++||||+||||++..++..+ +..++.++..+.... + ....++.+..+-..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 66777788999999999999999998764 556666655432110 0 1112333333322333
Q ss_pred hcCCeEEEEeccccccccc---CCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 381 LAAPSIIFFDEADVVGAKR---GGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r---~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
...+.++++|.+..+++.. +..++..-....|.+..+|..|..+..+..+.|+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~ 193 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIF 193 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4678899999999988621 11111111123466777777666654443333333
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.33 E-value=5.6e-06 Score=75.81 Aligned_cols=161 Identities=16% Similarity=0.108 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---C-cEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECG---A-HLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
..+.++|+||+|.||++.++.++..+. . +...+... . ...++.+...+......+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 356899999999999999999987652 1 21112111 0 012445555555555566788999999987
Q ss_pred -cccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCC------CccCHHHhhCCccceEEEecCCCHHHHH
Q 013506 128 -LCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRV------DAIDPALRRSGRFDAEVEVTVPTAEERF 200 (441)
Q Consensus 128 -l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~------~~l~~~l~~~~r~~~~i~~~~p~~~~~~ 200 (441)
+. ....+.|+..++.... ++++|.+++.+ ..+.+.+.+ |.. ++.+.+++..+..
T Consensus 88 kl~----------~~~~~aLl~~le~p~~------~~~~il~~~~~~~~~~~~k~~~~i~s--r~~-~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPN----------AAINEQLLTLTGLLHD------DLLLIVRGNKLSKAQENAAWFTALAN--RSV-QVTCQTPEQAQLP 148 (343)
T ss_dssp CCC----------TTHHHHHHHHHTTCBT------TEEEEEEESCCCTTTTTSHHHHHHTT--TCE-EEEECCCCTTHHH
T ss_pred CCC----------hHHHHHHHHHHhcCCC------CeEEEEEcCCCChhhHhhHHHHHHHh--Cce-EEEeeCCCHHHHH
Confidence 52 1345667777775322 34444444442 345667777 764 7999999999999
Q ss_pred HHHHHHhccCCCCCccc-HHHHHHHCCCCCHHHHHHHHHHHH
Q 013506 201 EILKLYTKKVPLDANVD-LEAIATSCNGYVGADLEALCREAT 241 (441)
Q Consensus 201 ~il~~~~~~~~~~~~~~-~~~l~~~~~g~~~~~i~~l~~~a~ 241 (441)
..+...+...+...+.+ +..++..+.| +.+.+.+.++...
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 99998887776554433 5555655543 5555555555443
No 192
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.33 E-value=2.7e-06 Score=73.32 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
++.++++|+||||||||+++.+++..+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34578999999999999999999997643
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=2.6e-07 Score=84.73 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=68.1
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCccccccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccc
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHKAHVGESEKALREAFSQASSHALSGKPSVVFIDEIDA 127 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~ 127 (441)
++++++..++|+||||+||||+++.+++.++..++.+.... ......+. . ..+..++++||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~------~~~~~~lg--------~--~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL------DRLNFELG--------V--AIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT------TTHHHHHG--------G--GTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc------hhHHHHHH--------H--hcchhHHHHHHHHH
Confidence 47888999999999999999999999998876654432211 00010111 1 11345789999987
Q ss_pred cccC-CCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceE
Q 013506 128 LCPR-RDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAE 188 (441)
Q Consensus 128 l~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~ 188 (441)
+... ..............+...+++. +.++.++|.++.+ +.+.++++++..
T Consensus 228 ~~~~~r~l~~~~~~~~~~~l~~~ldG~---------v~v~~~tn~~~~l-~alf~pg~ld~~ 279 (377)
T 1svm_A 228 TGGESRDLPSGQGINNLDNLRDYLDGS---------VKVNLEKKHLNKR-TQIFPPGIVTMN 279 (377)
T ss_dssp STTTTTTCCCCSHHHHHHTTHHHHHCS---------SCEEECCSSSCCE-EECCCCEEEEEC
T ss_pred HHHHHhhccccCcchHHHHHHHHhcCC---------CeEeeccCchhhH-HHhhcCcccChh
Confidence 7541 1110101111223444455542 3556778888887 566666666543
No 194
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.22 E-value=3.9e-06 Score=76.78 Aligned_cols=117 Identities=17% Similarity=0.152 Sum_probs=65.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhc----cC-----------chHHHHHHHHHHH-H
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY----VG-----------ESEALLRNTFQRA-R 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~----~g-----------~~~~~~~~~~~~a-~ 380 (441)
|++++.-++++|+||+|||++|..++... +.+++.++........ .| .+.+.+...+... +
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 66777788999999999999998887654 4566555543321110 01 1222232333332 3
Q ss_pred hcCCeEEEEecccccccccCCCCC---CCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 381 LAAPSIIFFDEADVVGAKRGGSSS---TSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~r~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
...+.+|+||.+..+.+....++. ...+...+.+..++..|...-.+..|.|+.+|
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 456789999999999863322111 00112235667777777554343334444433
No 195
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.21 E-value=1.4e-06 Score=79.52 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----ccC------------chHHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----YVG------------ESEALLRNTFQRAR 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~----~~g------------~~~~~~~~~~~~a~ 380 (441)
+++++.-++++||||+||||+|..++... +..++.++....... ..| ..++.+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 66777788999999999999999887654 455555554321111 011 11222222222333
Q ss_pred hcCCeEEEEeccccccc
Q 013506 381 LAAPSIIFFDEADVVGA 397 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~ 397 (441)
...+.+|++|++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45688999999999985
No 196
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.18 E-value=5e-06 Score=58.94 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhccc
Q 013506 195 TAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (441)
Q Consensus 195 ~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 274 (441)
+.++|.+||+.++.+.+...+.++..++..|.||++.+|..+|++|...++++.. ..++.+|+..++..+.+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~--------~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR--------KVATEKDFLKAVDKVIS 73 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC--------SSBCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc--------ccCCHHHHHHHHHHHhc
Confidence 4578999999999999888889999999999999999999999999999988753 24888999988887765
Q ss_pred cc
Q 013506 275 SI 276 (441)
Q Consensus 275 ~~ 276 (441)
..
T Consensus 74 ~~ 75 (88)
T 3vlf_B 74 GY 75 (88)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 197
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.16 E-value=7.3e-06 Score=81.99 Aligned_cols=205 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHH---------------------HHHHHHhCCc---------EEEEccCcc-------
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLV---------------------RAVVRECGAH---------LTVISPHSV------- 89 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~---------------------~~l~~~l~~~---------~~~v~~~~~------- 89 (441)
++.+..+..+.|+||+|+|||||+ +.++...... .+.++....
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 117 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRST 117 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCB
T ss_pred EEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhc
Q ss_pred ------------------------------------------------------------------------------cc
Q 013506 90 ------------------------------------------------------------------------------HK 91 (441)
Q Consensus 90 ------------------------------------------------------------------------------~~ 91 (441)
..
T Consensus 118 ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 197 (670)
T 3ux8_A 118 VGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLS 197 (670)
T ss_dssp HHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTCTTCCTT
T ss_pred eeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCCchhhhc
Q ss_pred ccccchHHHHHHHHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCC
Q 013506 92 AHVGESEKALREAFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNR 171 (441)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~ 171 (441)
........--++...-+..-....+|.+|++|| +.+..+......+...+...... ...+|.+++
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDE---------PtsgLD~~~~~~l~~~l~~l~~~-----g~tvi~vtH- 262 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDE---------PSIGLHQRDNDRLIATLKSMRDL-----GNTLIVVEH- 262 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEEC---------TTTTCCGGGHHHHHHHHHHHHHT-----TCEEEEECC-
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEEC---------CccCCCHHHHHHHHHHHHHHHHc-----CCEEEEEeC-
Q ss_pred CCccCHHHhhCCccceEEEe------------cCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHH
Q 013506 172 VDAIDPALRRSGRFDAEVEV------------TVPTAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCRE 239 (441)
Q Consensus 172 ~~~l~~~l~~~~r~~~~i~~------------~~p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~ 239 (441)
+..+.. ..+.++.+ ..-+.++...
T Consensus 263 ----d~~~~~--~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~-------------------------------------- 298 (670)
T 3ux8_A 263 ----DEDTML--AADYLIDIGPGAGIHGGEVVAAGTPEEVMN-------------------------------------- 298 (670)
T ss_dssp ----CHHHHH--HCSEEEEECSSSGGGCCSEEEEECHHHHHT--------------------------------------
T ss_pred ----CHHHHh--hCCEEEEecccccccCCEEEEecCHHHHhc--------------------------------------
Q ss_pred HHHHHHHhcccccccccceeeeHhhHHhhhhhcccccccCcccccCccccccccCchhHHHHHHHHHhcccCCchhhhhc
Q 013506 240 ATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGPSITRGVTVEIPKVTWEDIGGLRDLKKKLQQAVEWPIKHSTAFSRL 319 (441)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~~~~~~~~~~~~~~~ 319 (441)
....+...+..-............+...+-.+.+. -.+.-....+
T Consensus 299 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~L~~vsl 343 (670)
T 3ux8_A 299 ---------------------DPNSLTGQYLSGKKFIPIPAERRRPDGRWLEVVGA--------------REHNLKNVSV 343 (670)
T ss_dssp ---------------------CTTCHHHHHHTTSSCCCCCSSCCCCCSCEEEEEEE--------------CSTTCCSEEE
T ss_pred ---------------------CchhHHHHHhccccccccccccccccccceeecCc--------------ccccccccee
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAA 345 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la 345 (441)
.+.++..+.++||+|+||||+++++.
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHHH
No 198
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.16 E-value=1e-05 Score=69.60 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+++++..++++||||+||||+++.++...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45667788999999999999999998654
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.15 E-value=9.8e-06 Score=68.99 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
|++++.-++|+||||+|||+++..++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4778899999999999999999999885566777776654
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.14 E-value=5.7e-06 Score=75.89 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=47.1
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhhhhccCchHHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELYSMYVGESEALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
.+.+++..++++||||+||||++++++...+..++.+..++-. ..-.+..+| ...++|+||++....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3677788999999999999999999999988776654433211 011122222 334789999998875
No 201
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.13 E-value=6e-06 Score=71.90 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAA 345 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la 345 (441)
++.++.-++++||||+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56778889999999999999999998
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.12 E-value=4.3e-06 Score=71.23 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=30.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEech
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~ 357 (441)
+++++.-++++||||+||||+++.++...+..++.++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 56777788999999999999999999855666665554
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.11 E-value=1.5e-05 Score=68.56 Aligned_cols=37 Identities=27% Similarity=0.357 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~ 85 (441)
+++++..++|+||||+||||+++.++..+ +..+++++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46678899999999999999999998654 44555544
No 204
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.10 E-value=2.6e-06 Score=79.13 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=56.4
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcC---CceEEechhhhhhh-------------ccCchHHHHHHHHHHHHhcCCeEE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPSII 387 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~~~vl 387 (441)
..++++.|++||||+++|+++..... .+++.++++.+... |.|.... -...|..|. ..+|
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a~---~gtl 235 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELAD---GGTL 235 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHTT---TSEE
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeCC---CcEE
Confidence 34689999999999999999998874 68999998764321 1111111 123445443 3499
Q ss_pred EEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 388 ~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|||||+.+.+ .+...||..|+.
T Consensus 236 fldei~~l~~--------------~~q~~Ll~~l~~ 257 (387)
T 1ny5_A 236 FLDEIGELSL--------------EAQAKLLRVIES 257 (387)
T ss_dssp EEESGGGCCH--------------HHHHHHHHHHHH
T ss_pred EEcChhhCCH--------------HHHHHHHHHHhc
Confidence 9999999853 556777777764
No 205
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.09 E-value=4e-06 Score=72.67 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=50.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH--c-------CCceEEechhhh------h---hh-------------cc-Cc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHA--A-------EASFFSLSGAEL------Y---SM-------------YV-GE 367 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~--~-------~~~~~~i~~~~~------~---~~-------------~~-g~ 367 (441)
+++++.-++++||||+||||+++.++.. . +..++.++..+. . .. +. ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5677778999999999999999999984 3 345555554331 0 00 00 01
Q ss_pred hHH----HHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 368 SEA----LLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 368 ~~~----~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
+.. .+..+.+.+....+.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 111 123344444456788999999998874
No 206
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.09 E-value=4.2e-06 Score=76.33 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhh----cc-----------CchHHHHHHHHHHH-H
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSM----YV-----------GESEALLRNTFQRA-R 380 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~----~~-----------g~~~~~~~~~~~~a-~ 380 (441)
|++++.-++++|+||+|||++|..++..+ +..++.++....... -. ..+.+.+..++... +
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56777788999999999999998888654 556666665321110 00 11223333343332 3
Q ss_pred hcCCeEEEEecccccccc
Q 013506 381 LAAPSIIFFDEADVVGAK 398 (441)
Q Consensus 381 ~~~~~vl~iDE~d~~~~~ 398 (441)
...+.+|+||.+..+.+.
T Consensus 139 ~~~~~lVVIDsl~~l~~~ 156 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPK 156 (356)
T ss_dssp HTCCSEEEEECGGGCCCH
T ss_pred ccCCCEEEEcCHHHhcch
Confidence 466889999999998853
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.09 E-value=9.1e-06 Score=70.40 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE--C-------GAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~--l-------~~~~~~v~~~~ 88 (441)
|++++..++|+||||+|||++++.++.. + +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4678899999999999999999999984 3 34567776554
No 208
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.07 E-value=7.3e-06 Score=57.54 Aligned_cols=75 Identities=27% Similarity=0.360 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhccc
Q 013506 195 TAEERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVGP 274 (441)
Q Consensus 195 ~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 274 (441)
+.++|.+||+.++...+...+.++..++..+.||++.+|..++++|...++++.. ..++.+|+..++....|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------~~i~~~df~~Al~~~~p 73 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR--------YIVLAKDFEKAYKTVIK 73 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC--------SSBCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--------CCcCHHHHHHHHHHHcc
Confidence 6789999999999998887788999999999999999999999999988776542 45888999999888887
Q ss_pred ccc
Q 013506 275 SIT 277 (441)
Q Consensus 275 ~~~ 277 (441)
+..
T Consensus 74 s~~ 76 (83)
T 3aji_B 74 KDE 76 (83)
T ss_dssp ---
T ss_pred Cch
Confidence 654
No 209
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.06 E-value=4.2e-06 Score=68.13 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=19.1
Q ss_pred CCCCceEEEECCCCCcHHHHHH
Q 013506 321 ISPVRGALLHGPPGCSKTTLAK 342 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~ 342 (441)
+.++.-+.++|||||||||+++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3456678999999999999999
No 210
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.04 E-value=7e-05 Score=68.60 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=36.0
Q ss_pred cccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 291 DIGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 291 ~i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
.+.|.+...+.+.+.+.. +..++++||+|+|||++++.+++..+ .+.+++.
T Consensus 13 ~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred hcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 455666655656555431 14789999999999999999998875 5555543
No 211
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.03 E-value=2.9e-05 Score=67.53 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVV 74 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~ 74 (441)
+++++..+.|+||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56788999999999999999999988
No 212
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.02 E-value=2.3e-05 Score=66.15 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCc-------cccccccch-----HHHHHHHHHHHHhhhhcCC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHS-------VHKAHVGES-----EKALREAFSQASSHALSGK 116 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 116 (441)
++.-++++||+|+||||++..++..+ +..++.+.... +.+. .+.. ......++..........+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35678999999999999988777665 44555553211 1111 1100 0011234444443333345
Q ss_pred CeEEEEcccccc
Q 013506 117 PSVVFIDEIDAL 128 (441)
Q Consensus 117 ~~il~iDe~~~l 128 (441)
+++++|||++.+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 789999999875
No 213
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.01 E-value=4.8e-06 Score=71.54 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++.++.-+.++||||+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 66777788999999999999999999854
No 214
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.99 E-value=2.2e-05 Score=64.27 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=29.1
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
..++++|+|||||||+++.++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4588999999999999999999999887765543
No 215
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.96 E-value=1.1e-05 Score=73.54 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=49.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCceEEechhhhhh---------hc-----------------
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELYS---------MY----------------- 364 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---------~~~~~~i~~~~~~~---------~~----------------- 364 (441)
+++++.-++++||||+|||++|..+|... +..++.++....+. .+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67777788999999999999999998862 44555555433110 00
Q ss_pred cCc-hHHHHHHHHHHHHh--cCCeEEEEeccccccc
Q 013506 365 VGE-SEALLRNTFQRARL--AAPSIIFFDEADVVGA 397 (441)
Q Consensus 365 ~g~-~~~~~~~~~~~a~~--~~~~vl~iDE~d~~~~ 397 (441)
..+ ....+..+...+.. ..+.+|+||.+..++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 011 01122223344444 6788999999999874
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.94 E-value=2.5e-05 Score=70.86 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc------------ccchHHHHHHHHHHHHhhhh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH------------VGESEKALREAFSQASSHAL 113 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 113 (441)
|++++.-++|+||||+||||++..++..+ +..+++++........ .-.........+........
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 46778899999999999999999998764 4567777765432100 00000011122222222122
Q ss_pred cCCCeEEEEcccccccc
Q 013506 114 SGKPSVVFIDEIDALCP 130 (441)
Q Consensus 114 ~~~~~il~iDe~~~l~~ 130 (441)
...+++++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 34588999999988775
No 217
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.94 E-value=6.6e-06 Score=74.53 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCceEEechhhhh---------hhc------------cC---
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELY---------SMY------------VG--- 366 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---------~~~~~~i~~~~~~---------~~~------------~g--- 366 (441)
+++++.-++++||||+|||++|..+|... +..++.++....+ ..+ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 66777788999999999999999998764 4455555543310 000 00
Q ss_pred chH---HHHHHHHHHHHh-cCCeEEEEeccccccc
Q 013506 367 ESE---ALLRNTFQRARL-AAPSIIFFDEADVVGA 397 (441)
Q Consensus 367 ~~~---~~~~~~~~~a~~-~~~~vl~iDE~d~~~~ 397 (441)
..+ ..+..+...+.. ..+.+|+||.+..++.
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122334444444 6788999999999874
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.93 E-value=4.3e-06 Score=72.94 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcC----CceEEechhhh--hh----hc-----cCchHHHHHHHHHHHHhcCCe
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGAEL--YS----MY-----VGESEALLRNTFQRARLAAPS 385 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~~----~~~~~i~~~~~--~~----~~-----~g~~~~~~~~~~~~a~~~~~~ 385 (441)
..++..++++||+|+||||+.++++..+. ..++ +...+. .. .+ ++.....++..+..+....|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 46777889999999999999999998763 2222 211110 00 00 111112346677777667899
Q ss_pred EEEEeccc
Q 013506 386 IIFFDEAD 393 (441)
Q Consensus 386 vl~iDE~d 393 (441)
++++||.-
T Consensus 101 illlDEp~ 108 (261)
T 2eyu_A 101 VIFVGEMR 108 (261)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 99999984
No 219
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.93 E-value=2.5e-05 Score=67.82 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+|+|||||.++++....
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456777889999999999999999998763
No 220
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.93 E-value=2.1e-05 Score=71.33 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.1
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++.-+.|+||+||||||+.+++|...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345667788999999999999999999877
No 221
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.92 E-value=0.00011 Score=67.45 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
.++++||+|+|||++++.+++..+...+.+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 789999999999999999999887666666654
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.92 E-value=0.00011 Score=65.50 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=45.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhh--------hc-------------cCchHHHHHHHHH
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYS--------MY-------------VGESEALLRNTFQ 377 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~--------~~-------------~g~~~~~~~~~~~ 377 (441)
.++..++++||+|+||||++..+|..+ +..+..++. |.+. .| .++........+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 455678899999999999999999876 444443332 1110 00 0111222233455
Q ss_pred HHHhcCCeEEEEecccc
Q 013506 378 RARLAAPSIIFFDEADV 394 (441)
Q Consensus 378 ~a~~~~~~vl~iDE~d~ 394 (441)
.+....+.++++|+.-.
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 56667888999998753
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=7.5e-06 Score=68.55 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.+.++..++|+|||||||||+++.+++.++.+++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345678999999999999999999999998876543
No 224
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.91 E-value=1.9e-05 Score=71.74 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=26.7
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++.-+.++||+|+||||+.++++....
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4556777889999999999999999998773
No 225
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.91 E-value=1.5e-05 Score=69.65 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.9
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||+|+||||++++++...
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345667788999999999999999999876
No 226
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.91 E-value=2.6e-05 Score=68.68 Aligned_cols=113 Identities=12% Similarity=0.135 Sum_probs=60.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc-----CCceEEechhhhhhh-------------cc--CchHHHH-HHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA-----EASFFSLSGAELYSM-------------YV--GESEALL-RNTFQR 378 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~~~~i~~~~~~~~-------------~~--g~~~~~~-~~~~~~ 378 (441)
|++++ .++++||||+||||++-.++... +..++.++..+-... ++ -.+.+.+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 68999999999999976665433 455666665332211 00 1112222 222222
Q ss_pred ---HHhcCCeEEEEecccccccccCCCCC-CC--cc--hhhHHHHHHHHHhcCCCCCCeEEEE
Q 013506 379 ---ARLAAPSIIFFDEADVVGAKRGGSSS-TS--IT--VGERLLSTLLTEMDGLEQAKVIIYP 433 (441)
Q Consensus 379 ---a~~~~~~vl~iDE~d~~~~~r~~~~~-~~--~~--~~~~~~~~ll~~l~~~~~~~~v~~~ 433 (441)
++...|.++++|-+..+++.-..++. ++ -+ ...|.++..|..|.++-....|.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi 166 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCI 166 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 24567899999999999863221111 00 01 2346677777666544443333333
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.91 E-value=6.9e-06 Score=74.90 Aligned_cols=100 Identities=21% Similarity=0.320 Sum_probs=56.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEcc-Ccccc---------ccccchHHHHHHHHHHHHhhhhcCC
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECG----AHLTVISP-HSVHK---------AHVGESEKALREAFSQASSHALSGK 116 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~----~~~~~v~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (441)
.++..++++||+||||||+++++++.++ ..++.+.- .++.. ...+... ..|..+....+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~----~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDT----LGFSEALRSALRED 196 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB----SCHHHHHHHHTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecccc----CCHHHHHHHHhhhC
Confidence 3566899999999999999999988763 22333211 11110 0001000 11333445555667
Q ss_pred CeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCcc
Q 013506 117 PSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAI 175 (441)
Q Consensus 117 ~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l 175 (441)
|++|++||+- +.+....++...... ..++.+++..+..
T Consensus 197 PdvillDEp~------------d~e~~~~~~~~~~~G---------~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR------------DLETIRLALTAAETG---------HLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC------------SHHHHHHHHHHHHTT---------CEEEEEESCSSHH
T ss_pred cCEEecCCCC------------CHHHHHHHHHHHhcC---------CEEEEEEccChHH
Confidence 9999999973 224444445544331 2466777766544
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.91 E-value=4.2e-05 Score=65.55 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+++++..+.|+||||+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999854
No 229
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.90 E-value=1.3e-06 Score=76.56 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|+||+|+||||+++.+++.+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456788999999999999999999998763
No 230
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.90 E-value=1.5e-05 Score=72.85 Aligned_cols=30 Identities=30% Similarity=0.232 Sum_probs=26.9
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+++++.-+.++||||+||||+++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367778888999999999999999999887
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.89 E-value=1.8e-05 Score=69.34 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.9
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||||+||||++++++...
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345667778999999999999999999877
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.89 E-value=8.6e-06 Score=68.16 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=30.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
...++..++|+|||||||||+++.+|+.++..++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3345668999999999999999999999998887654
No 233
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.88 E-value=0.00023 Score=70.31 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=37.8
Q ss_pred cccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 013506 18 EEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR 75 (441)
Q Consensus 18 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~ 75 (441)
...++|.+...+.|.+.+... -...+.++|+||+|+|||++|+.++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 467999999999999987431 02346799999999999999998864
No 234
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.87 E-value=2.4e-06 Score=74.71 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+||||+++.+++.+
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45678899999999999999999999865
No 235
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.86 E-value=3.1e-05 Score=71.26 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=55.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCc--eEEechhhhhhh-------------ccCchHHHHHHHHHHHHhcCCeEEEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEAS--FFSLSGAELYSM-------------YVGESEALLRNTFQRARLAAPSIIFF 389 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~--~~~i~~~~~~~~-------------~~g~~~~~~~~~~~~a~~~~~~vl~i 389 (441)
..+++.|++||||+.+|+++....+.. ++.+++..+-.. |.|.... -...|..|. ..+|||
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~-~~g~~~~a~---~gtlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTR-KKGKLELAD---QGTLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC-EECHHHHTT---TSEEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccc-cCChHhhcC---CCeEEe
Confidence 458999999999999999999887543 888988764221 1111000 112445443 349999
Q ss_pred ecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 390 DEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 390 DE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
|||+.+.+ .+...||..|+.
T Consensus 229 dei~~l~~--------------~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 229 DEVGELDQ--------------RVQAKLLRVLET 248 (368)
T ss_dssp ETGGGSCH--------------HHHHHHHHHHHH
T ss_pred cChhhCCH--------------HHHHHHHHHHHh
Confidence 99999853 566778888864
No 236
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.85 E-value=2e-06 Score=78.63 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+..+..+.|+||+||||||+++.+++...
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 456788999999999999999999998764
No 237
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.85 E-value=1.5e-05 Score=65.52 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRE 76 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~ 76 (441)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456889999999999998655544
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.85 E-value=6.1e-06 Score=75.23 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC----CceEEech-hhhhh---------hccCchHHHHHHHHHHHHhcCCeEE
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSG-AELYS---------MYVGESEALLRNTFQRARLAAPSII 387 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~----~~~~~i~~-~~~~~---------~~~g~~~~~~~~~~~~a~~~~~~vl 387 (441)
.+++.++++||+||||||+.++++..+. ..++.+.. .++.. ..++.....+...+..|....|.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 4566789999999999999999988762 23322221 11100 0112112234557888888899999
Q ss_pred EEeccc
Q 013506 388 FFDEAD 393 (441)
Q Consensus 388 ~iDE~d 393 (441)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999984
No 239
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.85 E-value=0.00013 Score=67.99 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=47.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhh-------------------hhhhcc-CchHHHHHHHHHHH
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE-------------------LYSMYV-GESEALLRNTFQRA 379 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~-------------------~~~~~~-g~~~~~~~~~~~~a 379 (441)
++..++++|++|+||||++..+|..+ |..+..++.-- ++..+. .+....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999888766 44554443211 011011 22344456777777
Q ss_pred HhcCCeEEEEeccccc
Q 013506 380 RLAAPSIIFFDEADVV 395 (441)
Q Consensus 380 ~~~~~~vl~iDE~d~~ 395 (441)
....+.++++|.+-.+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999977543
No 240
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.85 E-value=2.2e-05 Score=72.63 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=48.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc---------CCceEEechhhhhh--------h-------------ccCc--
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA---------EASFFSLSGAELYS--------M-------------YVGE-- 367 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~---------~~~~~~i~~~~~~~--------~-------------~~g~-- 367 (441)
|+.++.-++++|||||||||+++.++-.. +..++.++..+.+. . ++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 77788889999999999999999776332 23355554432110 0 0000
Q ss_pred -h---HHHHHHHHHHHHhcCCeEEEEeccccccc
Q 013506 368 -S---EALLRNTFQRARLAAPSIIFFDEADVVGA 397 (441)
Q Consensus 368 -~---~~~~~~~~~~a~~~~~~vl~iDE~d~~~~ 397 (441)
. ...+..+...+....+.+|++|++-.++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 1 12223333444456788999999998875
No 241
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.84 E-value=3.2e-05 Score=68.79 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.+.++..+.++||+|+||||++++++..+.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34567788899999999999999999998773
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.83 E-value=1.1e-05 Score=67.10 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
++.++..++|+||||+||||+++.+++.++...+.++..+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 3567788999999999999999999988766666666543
No 243
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.83 E-value=2.6e-05 Score=71.32 Aligned_cols=31 Identities=32% Similarity=0.487 Sum_probs=26.5
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++.-+.|+||+||||||+.+++|....
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3456677889999999999999999998873
No 244
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.83 E-value=4.4e-05 Score=69.26 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|.||+||||||+++.+++...
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456788999999999999999999998763
No 245
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.82 E-value=3.4e-05 Score=66.21 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=26.3
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||+|+||||+.++++...
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355677789999999999999999999876
No 246
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.82 E-value=5.6e-05 Score=65.85 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.++..++|+||+|+||||+++.+++.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4678899999999999999999999875
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.82 E-value=0.00022 Score=63.34 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=55.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhh-------hhhh---------ccCchHHHHHHHHHHHHhc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAE-------LYSM---------YVGESEALLRNTFQRARLA 382 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~-------~~~~---------~~g~~~~~~~~~~~~a~~~ 382 (441)
++..++|+||+|+||||++..+|..+ |..+..++..- .+.. +.......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 45678999999999999999998766 33444333211 0110 0112233455555543 5
Q ss_pred CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEE
Q 013506 383 APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYP 433 (441)
Q Consensus 383 ~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~ 433 (441)
.+.++++|-.-.. ......+..+.+.+.......+++|+
T Consensus 182 ~~dlvIiDT~G~~------------~~~~~~~~el~~~l~~~~~~~~~lVl 220 (296)
T 2px0_A 182 EYDHVFVDTAGRN------------FKDPQYIDELKETIPFESSIQSFLVL 220 (296)
T ss_dssp GSSEEEEECCCCC------------TTSHHHHHHHHHHSCCCTTEEEEEEE
T ss_pred CCCEEEEeCCCCC------------hhhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 6789999922211 11235566676666543344456666
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.81 E-value=2.7e-05 Score=66.78 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.2
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||+|+||||+.++++...
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355677789999999999999999999876
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.81 E-value=1.4e-05 Score=66.44 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=32.5
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
+.++..++++|||||||||+++.++...+...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3456678999999999999999999987777777766554
No 250
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.80 E-value=5.9e-05 Score=68.98 Aligned_cols=82 Identities=28% Similarity=0.385 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCccccccc----cc--------hHHHHHHHHHHHHhhhh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAHV----GE--------SEKALREAFSQASSHAL 113 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~ 113 (441)
|++++.-++|+||||+|||+++..++... +.++++++......... +. .......++........
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46778899999999999999999887654 56777777654221100 00 00011122222222222
Q ss_pred cCCCeEEEEcccccccc
Q 013506 114 SGKPSVVFIDEIDALCP 130 (441)
Q Consensus 114 ~~~~~il~iDe~~~l~~ 130 (441)
...+++++||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 34578999999998875
No 251
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.80 E-value=1.8e-05 Score=64.78 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
+..|+|+|+||+||||+++.++..++.+++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 3579999999999999999999999887776544
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.80 E-value=3.1e-05 Score=65.92 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++..+.++||+|+||||+.++++....
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445677789999999999999999998773
No 253
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.80 E-value=9.6e-05 Score=68.83 Aligned_cols=73 Identities=18% Similarity=0.019 Sum_probs=44.6
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhh----------hhh------ccC----chHHHHHHHHHHH
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL----------YSM------YVG----ESEALLRNTFQRA 379 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~----------~~~------~~g----~~~~~~~~~~~~a 379 (441)
++..++++||+|+||||++..+|..+ +..+..+...-+ +.. |.. +........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35677899999999999999998766 555544432100 000 111 1122234455555
Q ss_pred HhcCCeEEEEeccccc
Q 013506 380 RLAAPSIIFFDEADVV 395 (441)
Q Consensus 380 ~~~~~~vl~iDE~d~~ 395 (441)
....+.++++|.+-.+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557889999988543
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.79 E-value=2.8e-05 Score=70.84 Aligned_cols=82 Identities=27% Similarity=0.424 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc----ccc--------hHHHHHHHHHHHHhhhh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH----VGE--------SEKALREAFSQASSHAL 113 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~----~~~--------~~~~~~~~~~~~~~~~~ 113 (441)
|++++..++|+||||+|||+++..++... +..+++++........ .+. ........+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 46678899999999999999999887654 4567777665422110 000 00011122222222222
Q ss_pred cCCCeEEEEcccccccc
Q 013506 114 SGKPSVVFIDEIDALCP 130 (441)
Q Consensus 114 ~~~~~il~iDe~~~l~~ 130 (441)
...+.+++||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 34589999999998874
No 255
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.79 E-value=7.1e-05 Score=64.81 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~ 86 (441)
|++++..++|+||||+|||+++..++... +..+++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56788899999999999999988776543 445666544
No 256
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.79 E-value=3.7e-05 Score=69.75 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.1
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+.++..+.|+||+|+|||||++++++...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3467889999999999999999999998763
No 257
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.78 E-value=8.5e-05 Score=64.62 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCceEEechhhh
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAEL 360 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~ 360 (441)
..+..++|+|+|||||||+|+.++..++...+.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999866666666544
No 258
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.77 E-value=4.4e-06 Score=74.34 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.++++..+.|+||+|+|||||++.+++.+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 456788999999999999999999998763
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.77 E-value=1.7e-05 Score=65.51 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
+..++|+|++||||||+++.+|+.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 347899999999999999999999999887654
No 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=5.2e-05 Score=65.50 Aligned_cols=30 Identities=23% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++..+.++||+|+||||+.++++..+.
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 455677889999999999999999998873
No 261
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.76 E-value=0.00019 Score=62.02 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=23.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHA 347 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~ 347 (441)
+++++..++++||||+||||++..++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6677788899999999999998776543
No 262
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.75 E-value=6.6e-05 Score=65.35 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||||+|||||.++++....
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3456777889999999999999999998773
No 263
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.75 E-value=3.7e-05 Score=69.74 Aligned_cols=30 Identities=30% Similarity=0.292 Sum_probs=25.7
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++..+.++||+||||||+.+++|....
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 445667789999999999999999998773
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.74 E-value=1.9e-05 Score=65.11 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
+..|+|+|+|||||||+++.+++.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999998877643
No 265
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.74 E-value=4.7e-05 Score=69.23 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=25.6
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++..+.++||+||||||+.+++|...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45667778999999999999999999877
No 266
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.73 E-value=6.3e-06 Score=75.35 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=26.9
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+..+..+.|.||+||||||+++.+++...
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456788999999999999999999998763
No 267
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.73 E-value=9e-06 Score=73.69 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|.||+||||||+++.+++...
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 456788999999999999999999998763
No 268
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.72 E-value=5.8e-06 Score=75.21 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+..+..+.|.||+||||||+++.+++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 456788999999999999999999998763
No 269
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.72 E-value=7e-05 Score=64.91 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++..+.++||||+||||+.++++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567788999999999999999999876
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.72 E-value=0.00011 Score=65.13 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=28.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceEEech
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~ 357 (441)
.+..++|+|||||||||+|+.++..++...+.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34567899999999999999999988545555654
No 271
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.72 E-value=0.00011 Score=63.64 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|+||+|+||||+++.+++.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456788999999999999999999998764
No 272
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.72 E-value=2.1e-05 Score=64.67 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA---EASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i 355 (441)
-.+++||+|+||||++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46899999999999985554433 5554443
No 273
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.72 E-value=5.2e-06 Score=75.35 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|.||+||||||+++.+++...
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456788999999999999999999998764
No 274
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.71 E-value=6.2e-06 Score=75.12 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+..+..+.|.||+||||||+++.+++...
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 456788999999999999999999998764
No 275
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.71 E-value=4.9e-05 Score=69.19 Aligned_cols=30 Identities=30% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++..+.++||+||||||+.+++|....
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 455677789999999999999999998873
No 276
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.71 E-value=6.7e-05 Score=64.54 Aligned_cols=29 Identities=28% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++..+.++||+|+||||+.++++...
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44567788999999999999999999876
No 277
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.70 E-value=3.4e-05 Score=64.06 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
..+..|+|+|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456789999999999999999999999876554
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.70 E-value=0.00015 Score=66.08 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=32.9
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEccCc
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG---------AHLTVISPHS 88 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~---------~~~~~v~~~~ 88 (441)
.+++++.-+.|+||||+|||++++.++.... ..+++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3677889999999999999999999998762 3456776644
No 279
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.70 E-value=0.00017 Score=66.74 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---------~~~~~~v~~~~ 88 (441)
|+.++..+.|+||||||||++++.++-.. +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 57788999999999999999999776332 23467776654
No 280
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.70 E-value=4.1e-05 Score=65.74 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.+ ..+.++||||+||||+.++++....
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4456 6789999999999999999998773
No 281
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.70 E-value=0.0004 Score=74.94 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=95.7
Q ss_pred ccccccchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEccCcc
Q 013506 17 AEEAIGGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVREC-------GAHLTVISPHSV 89 (441)
Q Consensus 17 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-------~~~~~~v~~~~~ 89 (441)
....++|.++.++.|.+.+... -...+.+.|+|+.|+|||+||+.++... ...++.++....
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 3467999999999999987431 0234678999999999999999887542 223444543331
Q ss_pred ccc---------------------cccchHHHHHHHHHHHHhhhhc--CCCeEEEEccccccccCCCCCchhhHHHHHHH
Q 013506 90 HKA---------------------HVGESEKALREAFSQASSHALS--GKPSVVFIDEIDALCPRRDHRREQDVRIASQL 146 (441)
Q Consensus 90 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l 146 (441)
... ........+...+. ..+. .++.+|++|+++.. . .
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~LlvlDd~~~~------------~---~- 250 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLR----VLMLRKHPRSLLILDDVWDP------------W---V- 250 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHH----HHTSSSSCSCEEEEESCCCH------------H---H-
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHH----HHHhccCCCEEEEEecCCCH------------H---H-
Confidence 100 00001111111111 1112 23789999998742 1 1
Q ss_pred HHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhhCCccceEEEecC-CCHHHHHHHHHHHhccCCCCCcccHHHHHHHC
Q 013506 147 FTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRRSGRFDAEVEVTV-PTAEERFEILKLYTKKVPLDANVDLEAIATSC 225 (441)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~~~r~~~~i~~~~-p~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~ 225 (441)
+.... ++..||.||+......... .....+.++. .+.++-.+++.................+++.+
T Consensus 251 ---~~~~~------~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 251 ---LKAFD------NQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKEC 317 (1249)
T ss_dssp ---HTTTC------SSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHT
T ss_pred ---HHhhc------CCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHh
Confidence 11111 1346666666543221111 1223577775 88888888888776544333334477888888
Q ss_pred CCCC
Q 013506 226 NGYV 229 (441)
Q Consensus 226 ~g~~ 229 (441)
.|..
T Consensus 318 ~glP 321 (1249)
T 3sfz_A 318 KGSP 321 (1249)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 8763
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.69 E-value=0.00011 Score=65.07 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=24.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++.++.-++++||||+||||++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677788999999999999999998644
No 283
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.69 E-value=0.00012 Score=62.81 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=27.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
+++++||+|+|||.++..++...+..++.+..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 589999999999999999988887776666554
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.69 E-value=2.7e-05 Score=64.21 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHH-cCCceEEec
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHA-AEASFFSLS 356 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~-~~~~~~~i~ 356 (441)
.+..++|+|+|||||||+++.++.. ++.+++..+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3557899999999999999999999 687776644
No 285
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.69 E-value=8.5e-06 Score=75.02 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.4
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+.++..+.|.||+||||||+++.+++..
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 346788999999999999999999999754
No 286
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.69 E-value=2.7e-05 Score=64.72 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+..++|.|+|||||||+++.++..++..++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 3456889999999999999999999988776644
No 287
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.68 E-value=8.3e-05 Score=65.52 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=49.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEccCcccccc----c-----------cchHHHH-HHHHHH
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC-----GAHLTVISPHSVHKAH----V-----------GESEKAL-REAFSQ 107 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l-----~~~~~~v~~~~~~~~~----~-----------~~~~~~~-~~~~~~ 107 (441)
|++++ .++++||||+|||+++-.++... +..+++++........ . ......+ ..+...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46677 79999999999999987765443 5567788765432110 0 0011111 111111
Q ss_pred HHhhhhcCCCeEEEEccccccccC
Q 013506 108 ASSHALSGKPSVVFIDEIDALCPR 131 (441)
Q Consensus 108 ~~~~~~~~~~~il~iDe~~~l~~~ 131 (441)
. .......|.+++||-+..+.+.
T Consensus 104 l-~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 L-DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp H-HTCCTTCCEEEEEECSTTCBCC
T ss_pred H-HHhhccCceEEEEecccccccc
Confidence 1 1123456899999999998754
No 288
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.68 E-value=2.6e-05 Score=64.29 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH-hCCcEE
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRE-CGAHLT 82 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~-l~~~~~ 82 (441)
..+..++|+|+|||||||+++.++.. ++.+++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 44678999999999999999999998 665544
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.68 E-value=0.00015 Score=64.05 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+++.+..++|+||||+||||++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56778899999999999999999988654
No 290
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=5.5e-05 Score=68.93 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=50.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCcccccc---------------ccchHHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHSVHKAH---------------VGESEKALREAFSQASS 110 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 110 (441)
|++++..++|+|+||+|||+++..++... +..+++++........ .......+........
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~- 137 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 137 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH-
Confidence 47788899999999999999999887654 5677777764322110 0001122222222221
Q ss_pred hhhcCCCeEEEEcccccccc
Q 013506 111 HALSGKPSVVFIDEIDALCP 130 (441)
Q Consensus 111 ~~~~~~~~il~iDe~~~l~~ 130 (441)
....+.+++||.+..+.+
T Consensus 138 --~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 --RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp --HHTCCSEEEEECGGGCCC
T ss_pred --hccCCCEEEEcCHHHhcc
Confidence 124578999999998864
No 291
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.67 E-value=2.1e-05 Score=71.20 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=49.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC--ceEEechhhhhh-----h---ccCchHHHHHHHHHHHHhcCCeEEEEec
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEA--SFFSLSGAELYS-----M---YVGESEALLRNTFQRARLAAPSIIFFDE 391 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~--~~~~i~~~~~~~-----~---~~g~~~~~~~~~~~~a~~~~~~vl~iDE 391 (441)
.++..++++||+|+||||++++++..+.. ..+.++....+. . ++.......+..+..|....|.++++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45667999999999999999999998743 244444332111 0 2211223455677778778899999999
Q ss_pred ccc
Q 013506 392 ADV 394 (441)
Q Consensus 392 ~d~ 394 (441)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 764
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.67 E-value=0.00096 Score=63.95 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=50.4
Q ss_pred eEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC--ccCHHHhhCCccceEEEecCCC
Q 013506 118 SVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVTVPT 195 (441)
Q Consensus 118 ~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~--~l~~~l~~~~r~~~~i~~~~p~ 195 (441)
.+++|||++.++... ..+....+..+...... ..+.+|.++.++. .++..++. .|...+.+...+
T Consensus 345 ivvVIDE~~~L~~~~------~~~~~~~L~~Iar~GRa-----~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV------GKKVEELIARIAQKARA-----AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT------CHHHHHHHHHHHHHCTT-----TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh------hHHHHHHHHHHHHHHhh-----CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999876432 11233333333332221 1478888888876 78888888 788889999999
Q ss_pred HHHHHHHHH
Q 013506 196 AEERFEILK 204 (441)
Q Consensus 196 ~~~~~~il~ 204 (441)
..+...++.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877764
No 293
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.66 E-value=8.2e-05 Score=70.85 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+++|.|++|||||+++..++..+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999988766
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.66 E-value=3.1e-05 Score=63.04 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=26.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
..+.|+|||||||||+++.+|..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876554
No 295
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.66 E-value=5.5e-05 Score=73.76 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVI 84 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v 84 (441)
...++++||||||||+++..++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4679999999999999999987754 4444443
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.65 E-value=3.1e-05 Score=69.00 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=31.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechhhhh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAELY 361 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~~~ 361 (441)
.++++||+||||||+++.+|..++..++..+....+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 578999999999999999999999888888765444
No 297
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.65 E-value=6e-05 Score=66.78 Aligned_cols=39 Identities=38% Similarity=0.600 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
..+..++|+||||+||||+++.++..++...+.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 346789999999999999999999988656677776444
No 298
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.65 E-value=6.2e-05 Score=68.21 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=26.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+||||||+.+++|....
T Consensus 21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 21 LKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 3456677889999999999999999998773
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.65 E-value=0.00017 Score=62.24 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.2
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||+|+||||+.++++...
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345677789999999999999999999876
No 300
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.64 E-value=0.00027 Score=61.52 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.0
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.+. +..+.|+||+|+||||+++.+++.+
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567 8899999999999999999999876
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.64 E-value=3.6e-05 Score=62.68 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+..+.|+||+||||||+++.+++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456999999999999999999999886443
No 302
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.63 E-value=0.0011 Score=54.23 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=65.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccCc---------ccccc-----------c--c----chHHHHHH
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPHS---------VHKAH-----------V--G----ESEKALRE 103 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~~---------~~~~~-----------~--~----~~~~~~~~ 103 (441)
...+++++++|.||||+|-.++-+. +..+..+.... +.... . . ........
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4579999999999999998876543 55665552211 11111 0 0 01234455
Q ss_pred HHHHHHhhhhcCCCeEEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCCccCHHHhh
Q 013506 104 AFSQASSHALSGKPSVVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVDAIDPALRR 181 (441)
Q Consensus 104 ~~~~~~~~~~~~~~~il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~~l~~~l~~ 181 (441)
.+..+......++.++|++||+....+-+.- -...++.++..... +.-+|.|.+.+ ++.+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~ev~~~l~~Rp~------~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLEEVISALNARPG------HQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHHHHHHHHHTSCT------TCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHHHHHHHHHhCcC------CCEEEEECCCC---cHHHHH
Confidence 5666666666677899999999764332211 12345666654322 35666776653 444444
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.63 E-value=0.00019 Score=62.81 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+|+|||||.++++..+.
T Consensus 40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566777899999999999999999998763
No 304
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.63 E-value=3.5e-05 Score=70.96 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=47.0
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC----CceEEechh-hhh-h---hccCc-----hHHHHHHHHHHHHhcCC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGA-ELY-S---MYVGE-----SEALLRNTFQRARLAAP 384 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~----~~~~~i~~~-~~~-~---~~~g~-----~~~~~~~~~~~a~~~~~ 384 (441)
+...++..++++||+|+||||++++++..+. ..++.+... ++. . .|+.+ ....+...+..+....|
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 3456777899999999999999999998763 333222211 100 0 01111 11233456666666789
Q ss_pred eEEEEeccc
Q 013506 385 SIIFFDEAD 393 (441)
Q Consensus 385 ~vl~iDE~d 393 (441)
.++++||+-
T Consensus 211 d~illdE~~ 219 (372)
T 2ewv_A 211 DVIFVGEMR 219 (372)
T ss_dssp SEEEESCCC
T ss_pred CEEEECCCC
Confidence 999999984
No 305
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.63 E-value=0.0002 Score=73.18 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=49.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc-----CCc--------------eEEechhhhhhhccCchHHHHHHHHHHHH-h
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA-----EAS--------------FFSLSGAELYSMYVGESEALLRNTFQRAR-L 381 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~-----~~~--------------~~~i~~~~~~~~~~g~~~~~~~~~~~~a~-~ 381 (441)
.++..++++||||+||||+.|.++... +.. +-.+...+.............+++...+. .
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a 750 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKA 750 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhc
Confidence 345678999999999999999987543 211 11122222222222222222222222222 4
Q ss_pred cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 382 AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 382 ~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
..|.++++||.-+.. +...+..+...++..+-
T Consensus 751 ~~p~LlLLDEP~~Gl---------D~~~~~~i~~~il~~L~ 782 (918)
T 3thx_B 751 TSQSLVILDELGRGT---------STHDGIAIAYATLEYFI 782 (918)
T ss_dssp CTTCEEEEESTTTTS---------CHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCC---------CHHHHHHHHHHHHHHHH
Confidence 678899999988654 22223455557777763
No 306
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.63 E-value=3.6e-05 Score=62.38 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=28.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+++|.|++||||||+++.||..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36899999999999999999999999887654
No 307
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.63 E-value=3.8e-05 Score=62.44 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+++.|++||||||+++.++..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999988876554
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.62 E-value=3.9e-05 Score=62.95 Aligned_cols=32 Identities=31% Similarity=0.519 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.+..|+|+|+||+||||+++.++..++..++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 45679999999999999999999999876653
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.62 E-value=4.3e-05 Score=62.70 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+..++++|+|||||||+++.++..++..++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3456899999999999999999999998877654
No 310
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.62 E-value=3.1e-05 Score=71.94 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=60.1
Q ss_pred ccCchhHHHHHHHHHhcccCCchhhhhcCCCCCceEEEECCCCCcHHHHHHHH-HHHcCCceEEec-hh---hhhhhc--
Q 013506 292 IGGLRDLKKKLQQAVEWPIKHSTAFSRLGISPVRGALLHGPPGCSKTTLAKAA-AHAAEASFFSLS-GA---ELYSMY-- 364 (441)
Q Consensus 292 i~g~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKTtla~~l-a~~~~~~~~~i~-~~---~~~~~~-- 364 (441)
+.|++.+|..+.-.+...... .+...|+|++|+||| ||++|+.+ +..+....+... ++ .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 678888877776554321111 112338999999999 99999999 887654333211 11 111100
Q ss_pred -cCchHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcC
Q 013506 365 -VGESEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDG 423 (441)
Q Consensus 365 -~g~~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~ 423 (441)
.| +.-.-. .+..| ...++|+||++++- ....+.|+..|+.
T Consensus 286 ~tG-~~~~~G-~l~LA---dgGvl~lDEIn~~~--------------~~~qsaLlEaMEe 326 (506)
T 3f8t_A 286 DRG-WALRAG-AAVLA---DGGILAVDHLEGAP--------------EPHRWALMEAMDK 326 (506)
T ss_dssp SSS-EEEEEC-HHHHT---TTSEEEEECCTTCC--------------HHHHHHHHHHHHH
T ss_pred CCC-cccCCC-eeEEc---CCCeeehHhhhhCC--------------HHHHHHHHHHHhC
Confidence 11 100001 12222 23499999999974 3667888888873
No 311
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.62 E-value=9.2e-05 Score=68.14 Aligned_cols=30 Identities=33% Similarity=0.349 Sum_probs=26.1
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.|+||+||||||+.++++...
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 355677889999999999999999999865
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.62 E-value=3.3e-05 Score=63.05 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=27.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+++.|+|||||||+|+.+|..++.+++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEccc
Confidence 5889999999999999999999998876543
No 313
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.61 E-value=5.7e-05 Score=69.07 Aligned_cols=31 Identities=39% Similarity=0.477 Sum_probs=26.3
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.|+||+||||||+.+++|....
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3456677889999999999999999998773
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.61 E-value=9.2e-05 Score=70.51 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++++.|+||||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999888766
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.61 E-value=0.00019 Score=62.72 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=28.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH---cCCceEEechhhh
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHA---AEASFFSLSGAEL 360 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~---~~~~~~~i~~~~~ 360 (441)
..++|+|+|||||||+|+.++.. .|..++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 35789999999999999999998 6777774554333
No 316
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.61 E-value=0.00019 Score=62.71 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEccCcc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRE---CGAHLTVISPHSV 89 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~---l~~~~~~v~~~~~ 89 (441)
+..|+|+|+|||||||+++.++.. .+..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 457999999999999999999987 5667665665443
No 317
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.60 E-value=0.00024 Score=67.48 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPH 87 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----~~~~~~v~~~ 87 (441)
|+.++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 68889999999999999999999887653 4467776643
No 318
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.60 E-value=0.00011 Score=66.37 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---------~~~~~~v~~~~ 88 (441)
|++++..++|+||||+|||+++..++... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 57788899999999999999999998764 45677777655
No 319
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.60 E-value=5.5e-05 Score=73.76 Aligned_cols=94 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhhhhhc----cCchHHHHHHHHHHH---------HhcCCeEE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAELYSMY----VGESEALLRNTFQRA---------RLAAPSII 387 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~~~~~----~g~~~~~~~~~~~~a---------~~~~~~vl 387 (441)
...+++.|+|||||||+++.++..+ +..+..+..+.-.... .+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3568999999999999999988765 4555544332211100 011111122222100 01134699
Q ss_pred EEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEe
Q 013506 388 FFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPI 434 (441)
Q Consensus 388 ~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~ 434 (441)
++||+..+. ...+..|++.+. ...+++++|
T Consensus 284 IIDEasml~--------------~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 284 IVDEVSMMG--------------DALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp EECCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEE
T ss_pred EEcCccCCC--------------HHHHHHHHHhCc---CCCEEEEEe
Confidence 999998773 245666665553 455677665
No 320
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.59 E-value=9.3e-05 Score=64.37 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCcc
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSV 89 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~~ 89 (441)
...+..++|+|+|||||||+++.++..++...+.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3456789999999999999999999999766667776654
No 321
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.58 E-value=0.00073 Score=60.11 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~ 86 (441)
.++..++++||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 456789999999999999999998766 445555544
No 322
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.58 E-value=0.00063 Score=64.03 Aligned_cols=29 Identities=24% Similarity=0.067 Sum_probs=25.2
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
...++..++|+||+|+||||+++.|+..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 44566778999999999999999999876
No 323
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.58 E-value=5.2e-05 Score=61.66 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.|+|+|+|||||||+++.+++.++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 589999999999999999999998776543
No 324
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.58 E-value=4.1e-05 Score=69.34 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.5
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHH
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHA 347 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~ 347 (441)
+++++.-++++|+||+|||++|..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6677778899999999999999988865
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.57 E-value=4.9e-05 Score=61.58 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.+++|+|++||||||+++.+++.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 579999999999999999999999987764
No 326
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.56 E-value=4.7e-05 Score=62.70 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.++|+|+|||||||+|+.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 4899999999999999999999998877654
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.56 E-value=6.3e-05 Score=61.36 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.4
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
++..++|+||||+||||+++.++..+|..++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 345688999999999999999999887665543
No 328
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=0.00015 Score=66.13 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEccCc
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---------GAHLTVISPHS 88 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---------~~~~~~v~~~~ 88 (441)
|++++.-++|+||||+|||+++..++... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 57788899999999999999999998762 44677777655
No 329
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.55 E-value=5.8e-05 Score=63.09 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=26.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.++..++|+|||||||||+++.++..+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 345678999999999999999999998765443
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.55 E-value=6e-05 Score=63.08 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
+..++|+|+|||||||+|+.++..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34688999999999999999999999887665
No 331
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.54 E-value=0.0011 Score=64.62 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 013506 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVR 75 (441)
Q Consensus 22 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~ 75 (441)
+|.+..++.|.+.+... +-.....+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 59999999999987431 012346789999999999999999996
No 332
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.54 E-value=4.3e-05 Score=70.35 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=28.2
Q ss_pred HHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 45 AQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 45 ~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.++.+.++..++|+||+|+||||+++.+++.+.
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3444567788999999999999999999998763
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.54 E-value=7e-05 Score=62.59 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
.++..++|+||+||||||+++.+++.++.. .++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADA 62 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEcccc
Confidence 356789999999999999999999998643 444433
No 334
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.54 E-value=5.8e-05 Score=64.18 Aligned_cols=32 Identities=28% Similarity=0.355 Sum_probs=28.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
+..++|.|+|||||||+|+.||..++..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999877654
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.53 E-value=5.3e-05 Score=62.49 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.2
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
+..++|+|+|||||||+++.+++.++..++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 34588999999999999999999998776554
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.53 E-value=5.9e-05 Score=61.56 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.++|+|+|||||||+++.+++.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999876553
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.51 E-value=8.1e-05 Score=60.71 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
.+..++|+||+|+||||+++.+++.++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 4578999999999999999999998875433
No 338
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.51 E-value=0.0011 Score=63.17 Aligned_cols=76 Identities=20% Similarity=0.314 Sum_probs=47.6
Q ss_pred CCe-EEEEccccccccCCCCCchhhHHHHHHHHHHHhcCCCCCCCCCeEEEEEEcCCCC--ccCHHHhhCCccceEEEec
Q 013506 116 KPS-VVFIDEIDALCPRRDHRREQDVRIASQLFTLMDSNKPSKTSVPHVVVVASTNRVD--AIDPALRRSGRFDAEVEVT 192 (441)
Q Consensus 116 ~~~-il~iDe~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vi~~~~~~~--~l~~~l~~~~r~~~~i~~~ 192 (441)
.|. +++|||+..++... .......+..+...... ..+.+|.+|..+. .++..++. .+...+.+.
T Consensus 296 lP~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~gRa-----~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lr 362 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV------GKKVEELIARLAQKARA-----AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFT 362 (512)
T ss_dssp CCEEEEEEETHHHHHHHH------HHHHHHHHHHHHHHCGG-----GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEEC
T ss_pred CCcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHHhhh-----CCcEEEEEecCCccccccHHHHh--hcCCeEEEE
Confidence 354 89999998775311 11222222222222111 1366667777765 68888887 788889999
Q ss_pred CCCHHHHHHHHH
Q 013506 193 VPTAEERFEILK 204 (441)
Q Consensus 193 ~p~~~~~~~il~ 204 (441)
..+..+...++.
T Consensus 363 v~s~~dsr~ilg 374 (512)
T 2ius_A 363 VSSKIDSRTILD 374 (512)
T ss_dssp CSSHHHHHHHHS
T ss_pred cCCHHHHHHhcC
Confidence 999999888775
No 339
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.51 E-value=5e-05 Score=64.39 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=27.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
..++|.|+|||||||+|+.||..++..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877655
No 340
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.50 E-value=0.00038 Score=58.74 Aligned_cols=71 Identities=15% Similarity=0.115 Sum_probs=41.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhh-------hhhhccCch-----HHHHHHHHHHHHh----cCC
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAE-------LYSMYVGES-----EALLRNTFQRARL----AAP 384 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~-------~~~~~~g~~-----~~~~~~~~~~a~~----~~~ 384 (441)
+.-.+++||+|+||||++..++..+ +..++.++... +.+. .|-. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3446788999999999887777655 45555553211 1111 1110 0112345555543 357
Q ss_pred eEEEEeccccc
Q 013506 385 SIIFFDEADVV 395 (441)
Q Consensus 385 ~vl~iDE~d~~ 395 (441)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999865
No 341
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.50 E-value=6e-05 Score=52.57 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhcccccccccceeeeHhhHHhhhhhcc
Q 013506 197 EERFEILKLYTKKVPLDANVDLEAIATSCNGYVGADLEALCREATMSAVKRSSDANECAGVLSVTMEDWRHARSVVG 273 (441)
Q Consensus 197 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 273 (441)
++|.+||+.++.+.+...+.++..++..+.||++.+|..+|++|...++++.. ..++.+|+..++....
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~--------~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR--------YVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC--------SEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--------CCcCHHHHHHHHHHHH
Confidence 36788999998888777778899999999999999999999999999988743 3588899988887663
No 342
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.50 E-value=8.5e-05 Score=62.19 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=27.8
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
..++|+|++||||||+|+.|+..++..++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 46899999999999999999999987776544
No 343
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.50 E-value=6.1e-05 Score=67.71 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHHHhhccCchHHHhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 22 GGNRAAVEALRELITFPLLYSSQAQKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 22 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..+..++.+...+...+.. ....+++|+|++|+||||+++.+++.++.+++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45666666666655432110 112469999999999999999999998766533
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.50 E-value=7.3e-05 Score=61.63 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+..|+|+|+|||||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457999999999999999999999886543
No 345
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.50 E-value=7e-05 Score=65.08 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEech
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSG 357 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~ 357 (441)
-+++.|||||||||+|+.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999999988877654
No 346
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.49 E-value=6.8e-05 Score=62.39 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
+..++|.|+|||||||+|+.+|..++..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 44689999999999999999999998876644
No 347
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.49 E-value=7.9e-05 Score=59.38 Aligned_cols=31 Identities=32% Similarity=0.408 Sum_probs=27.6
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
++.+.++..+.|.||+|+||||+++.+++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3456788899999999999999999999987
No 348
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.49 E-value=6.1e-05 Score=62.02 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.|+|+|+|||||||+++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 48999999999999999999999987654
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.48 E-value=0.0001 Score=60.36 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=31.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhh
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~ 360 (441)
++..+.|+|++||||||+++.++..+ |.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45567899999999999999999987 888887775443
No 350
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.47 E-value=8.7e-05 Score=62.08 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
+..|+|+|+|||||||+++.++..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45799999999999999999999998776543
No 351
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.47 E-value=0.00014 Score=66.23 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=25.9
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.++||+||||||+.+++|...
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345667788999999999999999999876
No 352
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.47 E-value=0.00027 Score=71.56 Aligned_cols=24 Identities=21% Similarity=0.110 Sum_probs=19.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHA 347 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~ 347 (441)
+..++++||+|||||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999976666443
No 353
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.47 E-value=7.8e-05 Score=62.04 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.+..|+|+|+|||||||+++.+++.++.+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45689999999999999999999999876554
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.47 E-value=6.9e-05 Score=61.59 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=22.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
..++|.|+|||||||+|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46889999999999999999999998877
No 355
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.47 E-value=8.7e-05 Score=64.50 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
.++|+|||||||||+++.+++.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999987766544
No 356
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.46 E-value=0.00049 Score=70.47 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.3
Q ss_pred CceEEEECCCCCcHHHHHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHA 347 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~ 347 (441)
+..++++||||+||||+.|.+|..
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999998543
No 357
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.46 E-value=7.8e-05 Score=61.96 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
..++|.|+|||||||+|+.++..++..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 4588999999999999999999998776543
No 358
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.45 E-value=0.00012 Score=61.57 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
.+.++-|+|.||||+||+|.++.+++.++.+.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 345577899999999999999999999975543
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.45 E-value=7.7e-05 Score=60.66 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.++|.|++||||||+|+.++..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 4789999999999999999999998776543
No 360
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.45 E-value=2.8e-05 Score=70.33 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEccCcccc-----c---cccchHHHHHHHHHHHHhhhhcCCCeEE
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGA--HLTVISPHSVHK-----A---HVGESEKALREAFSQASSHALSGKPSVV 120 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~--~~~~v~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~il 120 (441)
.++..++++||+|+||||+++++++.+.. ..+.++...... . .........+. +....+..+|.++
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~----~la~aL~~~p~il 244 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSAD----CLKSCLRMRPDRI 244 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHH----HHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHH----HHHHHhhhCCCEE
Confidence 45778999999999999999999988743 234444322110 0 01000111222 2233334569999
Q ss_pred EEcccc
Q 013506 121 FIDEID 126 (441)
Q Consensus 121 ~iDe~~ 126 (441)
++||.-
T Consensus 245 ildE~~ 250 (330)
T 2pt7_A 245 ILGELR 250 (330)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999964
No 361
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.44 E-value=0.00055 Score=67.16 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.1
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.+.++..+.++||+|+||||+++++++.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456778889999999999999999999877
No 362
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.44 E-value=8.5e-05 Score=62.94 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
.++|+|||||||||+|+.+++.++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998777655
No 363
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.44 E-value=4.5e-05 Score=75.10 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.2
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.++++..+.++||+|+||||+++.+++.+.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3467889999999999999999999998764
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.44 E-value=0.00012 Score=62.17 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.+..|+|+|+|||||||+++.++..++.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999876544
No 365
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.43 E-value=0.00011 Score=61.83 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
+.-+++.|||||||+|.|+.|++.++...+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 445788999999999999999999986644
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.43 E-value=9.6e-05 Score=59.78 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.++|.|++||||||+|+.++..++.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999998877543
No 367
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.43 E-value=8.2e-05 Score=60.67 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
.++++|||||||||+|+.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887664
No 368
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.43 E-value=0.00013 Score=60.93 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=29.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechhhh
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGAEL 360 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~~~ 360 (441)
.++..+.++||+||||||++++++..+ |.-.+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456678899999999999999999988 443345555444
No 369
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.43 E-value=9.9e-05 Score=61.77 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..|+|+|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999866543
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.43 E-value=0.0001 Score=61.58 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.++|.|||||||+|.|+.+|+.++...+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 47899999999999999999999876543
No 371
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.42 E-value=0.00061 Score=58.43 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=17.8
Q ss_pred CceEEEECCCCCcHHHHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAA 345 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la 345 (441)
+..+++.||+|||||++..++.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4578999999999998766553
No 372
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.41 E-value=8.9e-05 Score=63.37 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
+..++|.|+|||||||+|+.||..++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 34689999999999999999999998877654
No 373
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.41 E-value=0.00019 Score=65.67 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.++..+.++||+||||||+.+++|....
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 445677789999999999999999998873
No 374
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.41 E-value=0.00034 Score=68.86 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=27.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+|+||||+++++++.+.
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4567788899999999999999999998774
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.41 E-value=9.5e-05 Score=62.63 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
.++|.|||||||||+|+.+++.++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998877654
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.41 E-value=0.0001 Score=58.73 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=26.4
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.+.++..+.|+||+|+||||+++.++..+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 355667778999999999999999999987
No 377
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.41 E-value=0.00011 Score=63.04 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=27.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
..++|.|+|||||||+|+.||..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4689999999999999999999999877665
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.41 E-value=0.00016 Score=59.13 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~ 86 (441)
.+..+.|+|++||||||+++.++..+ +.+++.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 46789999999999999999999987 777776654
No 379
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.40 E-value=0.0013 Score=58.97 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~ 87 (441)
|+.++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 68899999999999999999999887654 3466666643
No 380
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.40 E-value=6.4e-05 Score=73.75 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.++++..+.++||+|+||||+++.+++.+.
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 456788999999999999999999998764
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.40 E-value=7.6e-05 Score=64.39 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..+.|+|++||||||+++.+++.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 6789999999999999999999999876654
No 382
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.40 E-value=0.00011 Score=63.50 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
++..++|.|||||||||+|+.+++.++...+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456789999999999999999999998766544
No 383
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.39 E-value=8.4e-05 Score=61.56 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.9
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC-----CceEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAE-----ASFFS 354 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~-----~~~~~ 354 (441)
..++|.|+|||||||+++.|+..++ .+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4588999999999999999999887 66654
No 384
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.39 E-value=8.7e-05 Score=60.50 Aligned_cols=28 Identities=36% Similarity=0.708 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.|+|+|||||||||+++.+ ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 888877654
No 385
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.39 E-value=0.0011 Score=54.29 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=59.5
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc---CCceEEe---ch------hhhhhhc-----------cCc------hHHHHHH
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA---EASFFSL---SG------AELYSMY-----------VGE------SEALLRN 374 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i---~~------~~~~~~~-----------~g~------~~~~~~~ 374 (441)
.+.+++++++|.||||+|-.+|-.+ |..+..+ ++ .++.... ... .....+.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4578999999999999998887655 6666555 32 1222222 101 1234455
Q ss_pred HHHHHHh----cCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 375 TFQRARL----AAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 375 ~~~~a~~----~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
.+..+.. ....+|+|||+-.+.+.+- -+ .+.++..+..-+...-| |++.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~------l~-----~~ev~~~l~~Rp~~~~v-IlTGr 161 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDY------LP-----LEEVISALNARPGHQTV-IITGR 161 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTS------SC-----HHHHHHHHHTSCTTCEE-EEECS
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCC------CC-----HHHHHHHHHhCcCCCEE-EEECC
Confidence 6666543 4578999999976543211 11 45677777764444444 44443
No 386
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=0.00014 Score=60.34 Aligned_cols=30 Identities=27% Similarity=0.483 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+..|+|+|+|||||||+++.+++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 457999999999999999999999986654
No 387
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.38 E-value=0.00018 Score=60.12 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.++..+.|+||+||||||+++.+++.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467889999999999999999999988
No 388
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.38 E-value=0.00075 Score=56.50 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeee
Q 013506 383 APSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFI 437 (441)
Q Consensus 383 ~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~ 437 (441)
...++++||+|.+... ++ ...+..++.. ......+++++||+
T Consensus 144 ~~~~iViDEah~~~~~---------~~-~~~~~~i~~~---~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSM---------GF-EEEVEALLSA---TPPSRQTLLFSATL 185 (207)
T ss_dssp TCSEEEEESHHHHHHT---------TC-HHHHHHHHHT---SCTTSEEEEECSSC
T ss_pred hceEEEEEChhHhhcc---------ch-HHHHHHHHHh---CCccCeEEEEEEec
Confidence 3469999999987631 11 2334455544 34566788888886
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.38 E-value=9.5e-05 Score=63.16 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.+..|+|+|+|||||||+++.++..++..++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 34679999999999999999999999866553
No 390
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.37 E-value=0.00012 Score=63.06 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
++..+++|+||||||||.+|.++|..+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33567999999999999999999997654
No 391
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.37 E-value=0.00011 Score=62.30 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.|+|+|||||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998766543
No 392
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.37 E-value=0.00013 Score=60.54 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
..++|+|+|||||||+|+.++..++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3578999999999999999999998776654
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.37 E-value=0.00016 Score=59.15 Aligned_cols=28 Identities=32% Similarity=0.685 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~~~ 81 (441)
++|+|+||+|+|||||++.+....+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5699999999999999999998875444
No 394
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.37 E-value=0.00013 Score=59.28 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.|+|+|++||||||+++.++..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999999876553
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.36 E-value=0.00012 Score=62.04 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.|+|+|||||||||+++.+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998766543
No 396
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.36 E-value=0.012 Score=49.29 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEcc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISP 86 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~ 86 (441)
..++++.|++|+||||++-.++..+ +..++.++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 3579999999999999988777654 555554443
No 397
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.36 E-value=0.00013 Score=63.08 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.+..|+|+|||||||||+++.+++.++..++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 467899999999999999999999998665543
No 398
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=61.22 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
..++|.|+|||||||+|+.+++.++..++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4589999999999999999999998776644
No 399
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.36 E-value=0.00027 Score=69.28 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=27.1
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+|+||||+++++++.+.
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4567788899999999999999999998774
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.36 E-value=0.00013 Score=58.95 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.|+|+|++||||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999877654
No 401
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.36 E-value=0.00084 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.6
Q ss_pred ceEEEECCCCCcHHHHHHHHHHH
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHA 347 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~ 347 (441)
.++++.+|+|+|||.++-+++..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999998777654
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.35 E-value=0.00012 Score=61.10 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..|+|+|+|||||||+++.+++.++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4579999999999999999999999865443
No 403
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.35 E-value=0.00044 Score=67.81 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.2
Q ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 319 LGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 319 ~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
+.+.++..+.++||+|+||||+++++++.+.
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4567788899999999999999999998774
No 404
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.35 E-value=0.00013 Score=60.30 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+..|+|+|+|||||||+++.++..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999886
No 405
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.35 E-value=3.9e-05 Score=75.25 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.++++..+.++||+|+||||+++.+++.+.
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 457888999999999999999999988764
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.35 E-value=9.2e-05 Score=63.01 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=26.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
..++|.|||||||||+++.||..++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 468999999999999999999999876544
No 407
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.35 E-value=0.00056 Score=67.13 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.6
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.+.++..+.++||+|+||||+++++++.+.
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 34567788899999999999999999998873
No 408
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00029 Score=68.03 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=24.9
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.++..+.++||+|+||||++++++...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567788999999999999999999876
No 409
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00032 Score=63.42 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE 76 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~ 76 (441)
|++++.-++|+||||+|||+++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677889999999999999999998865
No 410
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.34 E-value=0.00017 Score=60.28 Aligned_cols=28 Identities=32% Similarity=0.576 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
.|+|.||||+||+|.++.+++.++.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 3789999999999999999999986544
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.34 E-value=0.00014 Score=62.06 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=26.0
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
..+.|+||+||||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368899999999999999999998876543
No 412
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.34 E-value=0.00014 Score=61.00 Aligned_cols=29 Identities=38% Similarity=0.617 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.++..+.|+||+|+||||+++.+++.+.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34677899999999999999999999864
No 413
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=60.10 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH-HhC
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVR-ECG 78 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~-~l~ 78 (441)
..|+|+|+|||||||+++.+++ .++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 4689999999999999999998 444
No 414
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.33 E-value=0.00011 Score=62.18 Aligned_cols=30 Identities=27% Similarity=0.539 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|+||+|+||||+++.+++.+.
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999999999873
No 415
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00011 Score=60.29 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH-HcCCceE
Q 013506 326 GALLHGPPGCSKTTLAKAAAH-AAEASFF 353 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~-~~~~~~~ 353 (441)
.+++.|+|||||||+|+.++. ..+..++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 478999999999999999998 4554443
No 416
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.33 E-value=0.00011 Score=60.31 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+..|+|+|+|||||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457999999999999999999999988765
No 417
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.33 E-value=0.0018 Score=55.52 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
..++++||+|+|||.++..++..++...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 469999999999999999888887666655543
No 418
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.33 E-value=0.00019 Score=59.45 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..|+|+|+|||||||+++.++..++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4579999999999999999999999865543
No 419
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.32 E-value=0.00016 Score=60.60 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
..++|.|++||||||+++.+++.++..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 35789999999999999999999987666543
No 420
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00016 Score=59.26 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+..+.|+||+|+||||+++.+++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998764
No 421
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.32 E-value=0.00099 Score=54.75 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC---CceEEechhh
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAE 359 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~ 359 (441)
++..++|+|+|||||||+++.++..++ ..+..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 455688999999999999999998873 4455555433
No 422
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.32 E-value=0.00051 Score=59.49 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEccC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRE----CGAHLTVISPH 87 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~----l~~~~~~v~~~ 87 (441)
|++++.-++++|+||+|||+++..++.. .+.++++++..
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4678889999999999999999876532 35666666543
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.31 E-value=0.00018 Score=70.57 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=26.6
Q ss_pred cCCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 48 LGLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 48 ~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.++++..+.++||+|+||||+++.+++.+
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346788999999999999999999999875
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00016 Score=62.40 Aligned_cols=33 Identities=33% Similarity=0.396 Sum_probs=29.0
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
+..+.|+|++||||||+++.+|..++..++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 557999999999999999999999998876544
No 425
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.30 E-value=0.00015 Score=60.64 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..|+|+|++||||||+++.+++.++..++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4579999999999999999999998865544
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.30 E-value=0.00014 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
.++|.|+|||||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998877665
No 427
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.30 E-value=0.0011 Score=65.38 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=19.2
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
..+++.|+|||||||++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999877665443
No 428
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.30 E-value=0.00018 Score=59.25 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=25.8
Q ss_pred HhcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 46 QKLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 46 ~~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.++....++.++|+||+|+|||||++.+++...
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344445678899999999999999999998865
No 429
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.30 E-value=0.0002 Score=61.93 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~ 81 (441)
+..+.|+||||+||||+++.+++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 57899999999999999999999987643
No 430
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.29 E-value=0.00013 Score=60.73 Aligned_cols=27 Identities=37% Similarity=0.755 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
++..+.|+||+|+||||+++.+++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999998764
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.29 E-value=0.00024 Score=60.93 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
+..|+|.|+|||||||+++.++..++..++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999866544
No 432
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00022 Score=63.50 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=25.1
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
...++..++|+||+|+||||+++.+|..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34566778999999999999999999886
No 433
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.28 E-value=0.00014 Score=60.99 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+.++..+.|+||+||||||+++.+++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567889999999999999999999887
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.28 E-value=0.00032 Score=62.65 Aligned_cols=34 Identities=18% Similarity=0.166 Sum_probs=28.4
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
..++++||+|||||+++..||+.++..++..+..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3578999999999999999999998777665443
No 435
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.28 E-value=0.00018 Score=63.74 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=29.1
Q ss_pred hcCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 47 KLGLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 47 ~~~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
++.++++..+.|+||+|+||||+++.+++.+.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 45788999999999999999999999999883
No 436
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.28 E-value=0.0014 Score=67.01 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHH
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRAVVR 75 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~l~~ 75 (441)
+..+..++|+||+|+||||+++.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45678899999999999999998864
No 437
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.28 E-value=0.00018 Score=60.94 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
+..|+|.|+|||||||+++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35799999999999999999999998766543
No 438
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.28 E-value=0.00015 Score=61.70 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHL 81 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~ 81 (441)
+..|+|.|+|||||||+++.++..++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 33 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH 33 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 45799999999999999999999998644
No 439
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.28 E-value=0.0002 Score=62.01 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=25.8
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
+..++|+|||||||||+++.+++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999988876544
No 440
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.27 E-value=0.0014 Score=62.04 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=31.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEccC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC----GAHLTVISPH 87 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l----~~~~~~v~~~ 87 (441)
|+.++.-++|.|+||+|||+++..++... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 68889999999999999999999887643 4567776653
No 441
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.001 Score=65.10 Aligned_cols=27 Identities=30% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.++..+.|+||||+||||+.++++..+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456678999999999999999999876
No 442
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.26 E-value=0.00011 Score=66.05 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=26.7
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.+++|+|+||+||||+++++|..++.+++.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 368999999999999999999999877754
No 443
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.26 E-value=0.0002 Score=58.69 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
++.-+.|+||+|+||||+++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998764
No 444
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.25 E-value=0.0014 Score=66.21 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++..++++||||+||||+.|.++...
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44568899999999999999998763
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.25 E-value=0.00068 Score=60.56 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEcc
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISP 86 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~ 86 (441)
+..++|+||+|||||+|+..+|+.++..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3579999999999999999999999877666544
No 446
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=0.00025 Score=60.50 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
+..+.|+||+||||||+++.+++.++.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999886554
No 447
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.25 E-value=0.00023 Score=61.78 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=26.7
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
++..+.++||+||||||+++++|+.+|..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456889999999999999999999987654
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.25 E-value=0.00068 Score=57.05 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.2
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC----CceEEechhhh
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE----ASFFSLSGAEL 360 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~----~~~~~i~~~~~ 360 (441)
.++..+++.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4455688999999999999999998774 45666665443
No 449
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.25 E-value=0.00019 Score=60.20 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
....+..++|+||||+||||+++.++..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 345678899999999999999999999875
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.24 E-value=0.001 Score=64.41 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=58.0
Q ss_pred CCCCCceEEEECCCCCcHHHHHHH--HHHHc--CCceEEechhhhhh------h---cc---------------------
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKA--AAHAA--EASFFSLSGAELYS------M---YV--------------------- 365 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~--la~~~--~~~~~~i~~~~~~~------~---~~--------------------- 365 (441)
++.++..++++|||||||||+++. ++... +...+.++..+... . |+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 456778899999999999999999 45554 33344444322100 0 00
Q ss_pred ----Cc--hHHHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhc
Q 013506 366 ----GE--SEALLRNTFQRARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMD 422 (441)
Q Consensus 366 ----g~--~~~~~~~~~~~a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~ 422 (441)
.. ......+.........+.+|+|||+-.+.+. .+.+....+.+-.++..+.
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-----~~lD~~~~~~l~~ll~~l~ 172 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-----YDASSVVRRELFRLVARLK 172 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-----TCCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-----cCCHHHHHHHHHHHHHHHH
Confidence 00 1122334444444567889999999887652 1122334555667777775
No 451
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.24 E-value=0.00017 Score=60.44 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~ 356 (441)
.+.++|++||||||+++.++. ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 776665443
No 452
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.24 E-value=0.00026 Score=64.38 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
...++..++++||+|+||||+++.+|..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34567788999999999999999999887
No 453
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.24 E-value=0.00023 Score=63.41 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCcEEEEccCc
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHS 88 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v~~~~ 88 (441)
..++|+||+|||||++++.+++.++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 57999999999999999999999987777765543
No 454
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.23 E-value=0.0004 Score=61.81 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=25.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+||||+++.++..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35577899999999999999999999876
No 455
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.23 E-value=0.00017 Score=60.57 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.9
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.++..+.|+||+||||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 455678999999999999999999877
No 456
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.23 E-value=0.0011 Score=60.53 Aligned_cols=87 Identities=16% Similarity=0.092 Sum_probs=57.5
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHcC---C-c--eEEechhhhhhhccCchHHHHHHHHHHHH----hcCCeEEEEecccc
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAAE---A-S--FFSLSGAELYSMYVGESEALLRNTFQRAR----LAAPSIIFFDEADV 394 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~~---~-~--~~~i~~~~~~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDE~d~ 394 (441)
..++|+||+|.||++.++.++..+. . + .+.++. +.+++++.+.+. -+...|+++||++.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 3689999999999999999988652 2 2 122221 123444554443 34567999999997
Q ss_pred -cccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeee
Q 013506 395 -VGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISF 436 (441)
Q Consensus 395 -~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~ 436 (441)
+. +...+.|++.|+..+....+|+.+++
T Consensus 88 kl~--------------~~~~~aLl~~le~p~~~~~~il~~~~ 116 (343)
T 1jr3_D 88 GPN--------------AAINEQLLTLTGLLHDDLLLIVRGNK 116 (343)
T ss_dssp CCC--------------TTHHHHHHHHHTTCBTTEEEEEEESC
T ss_pred CCC--------------hHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 52 24578899999986655555555443
No 457
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.23 E-value=0.0002 Score=60.17 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
.+.++..+.|+||+|+||||+++.+++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999999999874
No 458
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=0.00022 Score=59.72 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.++|.|++||||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999886653
No 459
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.23 E-value=0.00022 Score=60.29 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
..+++..+.|+||+|+|||||++.+++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456788999999999999999999999875
No 460
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.22 E-value=0.00021 Score=59.80 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++.-+.|+||+||||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45568899999999999999999986
No 461
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.22 E-value=0.0023 Score=59.90 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=43.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc----CCceEEechhhhh----------hh------cc---Cch-HHHHHHHHHH
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA----EASFFSLSGAELY----------SM------YV---GES-EALLRNTFQR 378 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~----~~~~~~i~~~~~~----------~~------~~---g~~-~~~~~~~~~~ 378 (441)
++..++++|++|+||||++-.+|..+ |..+..++.--.. .. +. +.. ...++..+..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999998888665 5555544432100 00 11 111 2233566776
Q ss_pred HHhcCCeEEEEecc
Q 013506 379 ARLAAPSIIFFDEA 392 (441)
Q Consensus 379 a~~~~~~vl~iDE~ 392 (441)
+......++|+|=.
T Consensus 179 ~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 179 AKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEECC
Confidence 66556779999853
No 462
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.21 E-value=0.00062 Score=67.01 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=27.7
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.+.+.++..+.++||+|+||||+++++++.+.
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34567788899999999999999999998873
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.21 E-value=0.00066 Score=59.83 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechhh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~ 359 (441)
-++++||+|||||++|..+|..++..++..+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 4678999999999999999999887666655543
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.21 E-value=0.0013 Score=63.52 Aligned_cols=26 Identities=27% Similarity=0.115 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++..+.|+||||+||||+.++++..+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34467899999999999999999875
No 465
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.21 E-value=0.00021 Score=60.03 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 51 KWPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 51 ~~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
+++..++|+||+|+||||+++.+++.++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35678999999999999999999998753
No 466
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.21 E-value=0.00027 Score=59.67 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.|+|.|+|||||||+++.++..++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998766543
No 467
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.21 E-value=0.00025 Score=59.33 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHc-CCceEEe
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAA-EASFFSL 355 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~-~~~~~~i 355 (441)
+..+.|.|++||||||+++.+++.+ +.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 4468999999999999999999998 4666544
No 468
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.21 E-value=0.0002 Score=60.14 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
.+.|+||+||||||+++.++. +|..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 7776653
No 469
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.21 E-value=0.00023 Score=60.54 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEe
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSL 355 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i 355 (441)
.++|.|+|||||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766554
No 470
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.0016 Score=60.61 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~ 87 (441)
++..++++||+|+||||++..++..+ +..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 46789999999999999999988765 5556555543
No 471
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=59.95 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
++..+.|+||+|+||||++++++..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45568999999999999999999865
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.20 E-value=0.00083 Score=59.10 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGA 358 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~ 358 (441)
-++++||+|||||++|..+|+.++..++..+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 468899999999999999999998777766543
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.20 E-value=0.00065 Score=65.70 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=25.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
+.++..+.|+||||+||||++++++..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4667789999999999999999999866
No 474
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.19 E-value=0.0041 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=27.0
Q ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEe
Q 013506 321 ISPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSL 355 (441)
Q Consensus 321 ~~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i 355 (441)
..++..++++|++|+||||++..+|..+ +..+..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3456678999999999999999998876 4444443
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.19 E-value=0.00074 Score=72.56 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.3
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcCC
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAEA 350 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~ 350 (441)
.+.++++..+.++||+||||||+++++.+.+..
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 345678889999999999999999999988743
No 476
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.19 E-value=0.00029 Score=58.93 Aligned_cols=33 Identities=12% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCcEEEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC-GAHLTVI 84 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l-~~~~~~v 84 (441)
.+..|+|+|++||||||+++.+++.+ +.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 35679999999999999999999998 4555554
No 477
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.18 E-value=0.00032 Score=60.88 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
.+..+.|.||+||||||+++.+++.++..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 4578999999999999999999999986544
No 478
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.18 E-value=0.00075 Score=64.06 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
|++++.-+++.|+||+||||++..+|...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 77888889999999999999999887744
No 479
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.17 E-value=0.0023 Score=63.00 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 53 PRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 53 ~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
+..+++.|+||||||+++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988776554
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.17 E-value=0.00028 Score=59.89 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.6
Q ss_pred CceEEEECCCCCcHHHHHHHHHHHcCCceEE
Q 013506 324 VRGALLHGPPGCSKTTLAKAAAHAAEASFFS 354 (441)
Q Consensus 324 ~~~~ll~Gp~GtGKTtla~~la~~~~~~~~~ 354 (441)
+..+.+.||+||||||+++.+|+.++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3468899999999999999999999876543
No 481
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.17 E-value=0.00023 Score=60.28 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++..+.|+||+|+||||++++++..+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44566778999999999999999999987
No 482
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00031 Score=58.77 Aligned_cols=28 Identities=18% Similarity=0.529 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLT 82 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~ 82 (441)
.|+|.|++||||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999987554
No 483
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.16 E-value=0.00025 Score=59.52 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHc
Q 013506 320 GISPVRGALLHGPPGCSKTTLAKAAAHAA 348 (441)
Q Consensus 320 ~~~~~~~~ll~Gp~GtGKTtla~~la~~~ 348 (441)
.+.++.-+.|+||+|+||||++++++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34556678999999999999999999987
No 484
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.16 E-value=0.0003 Score=58.27 Aligned_cols=31 Identities=23% Similarity=0.013 Sum_probs=26.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCceEEec
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAA---EASFFSLS 356 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~ 356 (441)
.+.|.|++||||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36899999999999999999988 88777654
No 485
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.16 E-value=0.00024 Score=58.85 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcC---CceEEechhhh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAE---ASFFSLSGAEL 360 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~---~~~~~i~~~~~ 360 (441)
.++|.|+|||||||+++.|++.++ ..+..++..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 478999999999999999999876 23444554444
No 486
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.16 E-value=0.0019 Score=61.40 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=26.2
Q ss_pred CCceEEEECCCCCcHHHHHHHHHHHc---CCceEEech
Q 013506 323 PVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSG 357 (441)
Q Consensus 323 ~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~ 357 (441)
++..++++|+||+||||++..+|..+ |..+..++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35578999999999999999998766 555555543
No 487
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.16 E-value=0.0015 Score=58.65 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHc---CCceEEechh--------------------hhhhhccCchHHHHHHHHHH
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSGA--------------------ELYSMYVGESEALLRNTFQR 378 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~~--------------------~~~~~~~g~~~~~~~~~~~~ 378 (441)
.++.-+.|+||+|+||||+++.+|..+ +..+...... -+...+.......+.+.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Q ss_pred HHhcCCeEEEEecccccccccCCCCCCCcchhhHHHHHHHHHhcCCCCCCeEEEEeeeeee
Q 013506 379 ARLAAPSIIFFDEADVVGAKRGGSSSTSITVGERLLSTLLTEMDGLEQAKVIIYPISFIFQ 439 (441)
Q Consensus 379 a~~~~~~vl~iDE~d~~~~~r~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~~~~~~~~~ 439 (441)
+......++++|.+..... ..+...+|-....-+..+..++++-++.-|
T Consensus 207 ~~~~~~d~vliDtaG~~~~------------~~~l~~eL~~i~ral~~de~llvLDa~t~~ 255 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSET------------NRNLMDEMKKIARVTKPNLVIFVGDALAGN 255 (328)
T ss_dssp HHHHTCSEEEEEECCSCCT------------TTCHHHHHHHHHHHHCCSEEEEEEEGGGTT
T ss_pred HHhccchhhHHhhccchhH------------HHHHHHHHHHHHHHhcCCCCEEEEecHHHH
No 488
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.15 E-value=0.00068 Score=63.09 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVRECGA 79 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l~~ 79 (441)
++..++++||+|+||||+++++++.+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5677999999999999999999998753
No 489
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.14 E-value=0.00038 Score=57.69 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEc
Q 013506 55 GLLLYGPPGTGKTSLVRAVVREC---GAHLTVIS 85 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~ 85 (441)
.|+|+|++||||||+++.+++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48899999999999999999988 77766553
No 490
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.14 E-value=0.00055 Score=62.21 Aligned_cols=29 Identities=24% Similarity=0.480 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013506 49 GLKWPRGLLLYGPPGTGKTSLVRAVVREC 77 (441)
Q Consensus 49 ~~~~~~~vll~Gp~GtGKT~l~~~l~~~l 77 (441)
.+.++..+.|+||+|+||||+++.++..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35577899999999999999999999876
No 491
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.14 E-value=0.00023 Score=59.80 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCcHHHHHHHHHHHcC
Q 013506 322 SPVRGALLHGPPGCSKTTLAKAAAHAAE 349 (441)
Q Consensus 322 ~~~~~~ll~Gp~GtGKTtla~~la~~~~ 349 (441)
.++..+.++||+|+||||++++++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556788999999999999999999885
No 492
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.14 E-value=0.00027 Score=62.63 Aligned_cols=36 Identities=25% Similarity=0.346 Sum_probs=30.6
Q ss_pred hcCCCCCceEEEECCCCCcHHHHHHHHHHHcCCceE
Q 013506 318 RLGISPVRGALLHGPPGCSKTTLAKAAAHAAEASFF 353 (441)
Q Consensus 318 ~~~~~~~~~~ll~Gp~GtGKTtla~~la~~~~~~~~ 353 (441)
.+.++++..+.|+||+|+||||++++|+..+...++
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 346788889999999999999999999999855543
No 493
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.14 E-value=0.00024 Score=59.48 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTVI 84 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~v 84 (441)
.|.|+|++||||||+++.+++ ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 589999999999999999999 77665543
No 494
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.13 E-value=0.00037 Score=59.26 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 013506 55 GLLLYGPPGTGKTSLVRAVVRECGAHLTV 83 (441)
Q Consensus 55 ~vll~Gp~GtGKT~l~~~l~~~l~~~~~~ 83 (441)
.|+|.|+|||||||+++.++..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48999999999999999999999865443
No 495
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.13 E-value=0.00014 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHH
Q 013506 50 LKWPRGLLLYGPPGTGKTSLVRA 72 (441)
Q Consensus 50 ~~~~~~vll~Gp~GtGKT~l~~~ 72 (441)
+.++.-+.|+|||||||||+++.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45778899999999999999995
No 496
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.13 E-value=0.0073 Score=56.25 Aligned_cols=36 Identities=33% Similarity=0.483 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEccC
Q 013506 52 WPRGLLLYGPPGTGKTSLVRAVVREC---GAHLTVISPH 87 (441)
Q Consensus 52 ~~~~vll~Gp~GtGKT~l~~~l~~~l---~~~~~~v~~~ 87 (441)
++..++++|++|+||||++..++..+ +..+..+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36789999999999999999888765 4556655543
No 497
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.13 E-value=0.00024 Score=58.50 Aligned_cols=25 Identities=36% Similarity=0.747 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013506 54 RGLLLYGPPGTGKTSLVRAVVRECG 78 (441)
Q Consensus 54 ~~vll~Gp~GtGKT~l~~~l~~~l~ 78 (441)
+.+.|+||+|+||||+++.+++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998864
No 498
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.13 E-value=0.00033 Score=58.21 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=25.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHc---CCceEEe
Q 013506 327 ALLHGPPGCSKTTLAKAAAHAA---EASFFSL 355 (441)
Q Consensus 327 ~ll~Gp~GtGKTtla~~la~~~---~~~~~~i 355 (441)
+.|.|++||||||+++.+++.+ |.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 6899999999999999999998 8887754
No 499
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.13 E-value=0.00045 Score=57.83 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=25.3
Q ss_pred ceEEEECCCCCcHHHHHHHHHHHc---CCceEEech
Q 013506 325 RGALLHGPPGCSKTTLAKAAAHAA---EASFFSLSG 357 (441)
Q Consensus 325 ~~~ll~Gp~GtGKTtla~~la~~~---~~~~~~i~~ 357 (441)
.++++.|+||+||||++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999988887765 666654443
No 500
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00028 Score=58.29 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=24.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHcCCceEEechhh
Q 013506 326 GALLHGPPGCSKTTLAKAAAHAAEASFFSLSGAE 359 (441)
Q Consensus 326 ~~ll~Gp~GtGKTtla~~la~~~~~~~~~i~~~~ 359 (441)
.++|+||||+||||+++.++...+.. +.++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 46899999999999999999866542 3344433
Done!