BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013508
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 229/326 (70%), Positives = 285/326 (87%), Gaps = 1/326 (0%)
Query: 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDF 63
ME+LI LVN+IQRACT LGD+G +A +LW++LP LES+VG+DF
Sbjct: 1 MENLISLVNKIQRACTALGDHGDS-SALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDF 59
Query: 64 LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTK 123
LPRGSGIVTRRPLVLQL K +DG++EYAEFLHLP+++FTDF+ VRKEIQDETDR TG++K
Sbjct: 60 LPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSK 119
Query: 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILA 183
IS +PIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ D+IV+DIE+MVRSY+EKPN +ILA
Sbjct: 120 AISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA 179
Query: 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243
ISPANQD+ATSDA+K++REVDP+G+RTFGVLTK+DLMDKGT+A+++LEGRS++L++PWVG
Sbjct: 180 ISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVG 239
Query: 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRI 303
+VNRSQADIN+N+DMI AR++EREYF+ + +Y HLA KMGSE+LAK+LSKHLE VI+SRI
Sbjct: 240 VVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRI 299
Query: 304 PSITSLINKSIEELESEMDHLGRPIA 329
P I SLINK++ ELE+E+ LG+PIA
Sbjct: 300 PGIQSLINKTVLELETELSRLGKPIA 325
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/438 (41%), Positives = 254/438 (57%), Gaps = 20/438 (4%)
Query: 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDF 63
ME LI LVNR+Q A + +G D LP LE+ VGRDF
Sbjct: 3 MEDLIPLVNRLQDAFSAIGQNADLD---------LPQIAVVGGQSAGKSSVLENFVGRDF 53
Query: 64 LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTK 123
LPRGSGIVTRRPLVLQL + + EYAEFLH ++FTDF VR EI+ ETDRVTG K
Sbjct: 54 LPRGSGIVTRRPLVLQLV---NATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 110
Query: 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILA 183
ISP+PI+L +YSP+V+NLTL+DLPG+TKV V QP I I M+ +V K N +ILA
Sbjct: 111 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA 170
Query: 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243
+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G
Sbjct: 171 VSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 230
Query: 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRI 303
+VNRSQ DI+ D+ A ER++F + P Y HLA +MG+ YL K+L++ L + IR +
Sbjct: 231 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTL 290
Query: 304 PSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG------ 357
P + + + + +E E++ D + +L++ + F F++ ++G
Sbjct: 291 PGLRNKLQSQLLSIEKEVEEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDT 350
Query: 358 --RPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLI 415
GG RI +F + P L K+ FD + + + A L P+ + ++
Sbjct: 351 YELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNAAAAATGLFTPDMAFETIV 410
Query: 416 EGSLSYFRGPAEASADAV 433
+ + R P D V
Sbjct: 411 KKQVKKIREPCLKCVDMV 428
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/438 (41%), Positives = 254/438 (57%), Gaps = 20/438 (4%)
Query: 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDF 63
ME LI LVNR+Q A + +G D LP LE+ VGRDF
Sbjct: 26 MEDLIPLVNRLQDAFSAIGQNADLD---------LPQIAVVGGQSAGKSSVLENFVGRDF 76
Query: 64 LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTK 123
LPRGSGIVTRRPLVLQL + + EYAEFLH ++FTDF VR EI+ ETDRVTG K
Sbjct: 77 LPRGSGIVTRRPLVLQLV---NSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 133
Query: 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILA 183
ISP+PI+L +YSP+V+NLTL+DLPG+TKV V QP I I M+ +V K N +ILA
Sbjct: 134 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA 193
Query: 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243
+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G
Sbjct: 194 VSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 253
Query: 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRI 303
+VNRSQ DI+ D+ A ER++F + P Y HLA +MG+ YL K+L++ L + IR +
Sbjct: 254 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTL 313
Query: 304 PSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGG------ 357
P + + + + +E E+D D + +L++ + F F++ ++G
Sbjct: 314 PGLRNKLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDT 373
Query: 358 --RPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLI 415
GG RI +F + P L K+ FD + + + + L P+ + +
Sbjct: 374 YELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDLAFEATV 433
Query: 416 EGSLSYFRGPAEASADAV 433
+ + + P+ D V
Sbjct: 434 KKQVQKLKEPSIKCVDMV 451
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 302 bits (774), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/320 (49%), Positives = 212/320 (66%), Gaps = 12/320 (3%)
Query: 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRD 62
+ME LI LVNR+Q A + +G D LP LE+ VGRD
Sbjct: 5 SMEDLIPLVNRLQDAFSAIGQNADLD---------LPQIAVVGGQSAGKSSVLENFVGRD 55
Query: 63 FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKT 122
FLPRGSGIVTRRPLVLQL + + EYAEFLH ++FTDF VR EI+ ETDRVTG
Sbjct: 56 FLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN 112
Query: 123 KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVIL 182
K ISP+PI+L +YSP+V+NLTL+DLPG+TKV V QP I I M+ +V K N +IL
Sbjct: 113 KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 172
Query: 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242
A+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A DVLE + L+ ++
Sbjct: 173 AVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232
Query: 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSR 302
G+VNRSQ DI+ D+ A ER++F + P Y HLA +MG+ YL K+L++ L + IR
Sbjct: 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDT 292
Query: 303 IPSITSLINKSIEELESEMD 322
+P + + + + +E E++
Sbjct: 293 LPGLRNKLQSQLLSIEKEVE 312
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 299 bits (765), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/303 (51%), Positives = 203/303 (66%), Gaps = 12/303 (3%)
Query: 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDF 63
ME LI LVNR+Q A + +G D LP LE+ VGRDF
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLD---------LPQIAVVGGQSAGKSSVLENFVGRDF 51
Query: 64 LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTK 123
LPRGSGIVTRRPLVLQL + + EYAEFLH ++FTDF VR EI+ ETDRVTG K
Sbjct: 52 LPRGSGIVTRRPLVLQLVNS---TTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNK 108
Query: 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILA 183
ISP+PI+L +YSP+V+NLTL+DLPG+TKV V QP I I M+ +V K N +ILA
Sbjct: 109 GISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILA 168
Query: 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243
+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLDLMD+GT+A DVLE + L+ ++G
Sbjct: 169 VSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228
Query: 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRI 303
+VNRSQ DI+ D+ A ER++F + P Y HLA +MG+ YL K+L++ L + IR +
Sbjct: 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTL 288
Query: 304 PSI 306
P +
Sbjct: 289 PGL 291
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/320 (48%), Positives = 207/320 (64%), Gaps = 12/320 (3%)
Query: 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRD 62
+ E LI LVNR+Q A + +G D LP LE+ VGRD
Sbjct: 5 SXEDLIPLVNRLQDAFSAIGQNADLD---------LPQIAVVGGQSAGKSSVLENFVGRD 55
Query: 63 FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKT 122
FLPRGSGIVTRRPLVLQL + + EYAEFLH ++FTDF VR EI+ ETDRVTG
Sbjct: 56 FLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTN 112
Query: 123 KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVIL 182
K ISP+PI+L +YSP+V+NLTL+DLPG TKV V QP I I + +V K N +IL
Sbjct: 113 KGISPVPINLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLIL 172
Query: 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242
A+SPAN D+A SDA+K+A+EVDP G+RT GV+TKLDL D+GT+A DVLE + L+ ++
Sbjct: 173 AVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLXDEGTDARDVLENKLLPLRRGYI 232
Query: 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSR 302
G+VNRSQ DI+ D+ A ER++F + P Y HLA + G+ YL K+L++ L + IR
Sbjct: 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRXGTPYLQKVLNQQLTNHIRDT 292
Query: 303 IPSITSLINKSIEELESEMD 322
+P + + + + +E E++
Sbjct: 293 LPGLRNKLQSQLLSIEKEVE 312
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 158/303 (52%), Positives = 203/303 (66%), Gaps = 12/303 (3%)
Query: 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDF 63
ME LI LVNR+Q A + LG S L E LP LE+ VGRDF
Sbjct: 19 MEELIPLVNRLQDAFSALGQ--------SCLLE-LPQIAVVGGQSAGKSSVLENFVGRDF 69
Query: 64 LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTK 123
LPRGSGIVTRRPLVLQL ++ EYAEFLH ++FTDF VR EI+ ETDRVTG K
Sbjct: 70 LPRGSGIVTRRPLVLQLITSK---AEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNK 126
Query: 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILA 183
IS IPI+L +YSP+V+NLTLIDLPG+TKV V QP I I M+ ++ + N +ILA
Sbjct: 127 GISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILA 186
Query: 184 ISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243
++PAN D+A SDA+KLA+EVDP G RT GV+TKLDLMD+GT+A DVLE + L+ +VG
Sbjct: 187 VTPANTDLANSDALKLAKEVDPQGLRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYVG 246
Query: 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRI 303
+VNRSQ DI+ D+ A ER++F + P Y H+A +MG+ +L K+L++ L + IR +
Sbjct: 247 VVNRSQKDIDGKKDIKAAMLAERKFFLSHPAYRHIADRMGTPHLQKVLNQQLTNHIRDTL 306
Query: 304 PSI 306
P+
Sbjct: 307 PNF 309
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 274 bits (701), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 150/322 (46%), Positives = 207/322 (64%), Gaps = 15/322 (4%)
Query: 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPXXXXXXXXXXXXXXXLESVVGRDFL 64
+ LI ++N++Q LG S LP LE++VGRDFL
Sbjct: 1 DQLIPVINKLQDVFNTLG----------SDPLDLPQIVVVGSQSSGKSSVLENIVGRDFL 50
Query: 65 PRGSGIVTRRPLVLQLHK---TEDGSQ--EYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119
PRGSGIVTRRPL+LQL +DGSQ E+ EFLH P F DFS +R+EI +TDR+T
Sbjct: 51 PRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMT 110
Query: 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNS 179
GK K IS PI+L IYSP+VVNLTL+DLPG+TKV V QP I + I MV +Y++K N+
Sbjct: 111 GKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNA 170
Query: 180 VILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239
+I+A++PAN D+A SDA++LA+EVDP G+RT GV+TKLDLMDKGT+A++VL GR L
Sbjct: 171 IIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230
Query: 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVI 299
++G++NRSQ DI + + + E YF P Y +A + G+ YL+K L+K L I
Sbjct: 231 GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHI 290
Query: 300 RSRIPSITSLINKSIEELESEM 321
R +P + ++K + +++ E+
Sbjct: 291 RDTLPDLKVKVSKMLSDVQGEL 312
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 175/314 (55%), Gaps = 13/314 (4%)
Query: 64 LPRGSGIVTRRPLVLQLHK--TED---GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118
LPRGSGIVTR PLVL+L K ED G Y ++ + +D S V KEI + +
Sbjct: 70 LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAI 125
Query: 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN 178
G+ IS I L I S +V +LTLIDLPG+T+VAV QP I I+++++ Y+++
Sbjct: 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE 185
Query: 179 SVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR 236
++ L + P+N DIAT++A+ +A+EVDP G+RT G+LTK DL+DKGT +DV+ +
Sbjct: 186 TISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFH 245
Query: 237 LQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL--AGKMGSEYLAKLLSKH 294
L+ ++ + R Q +I + + A ++E+ +F P + L GK LA+ L+
Sbjct: 246 LKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSE 305
Query: 295 LESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHL 354
L + I +P + + I ++ + + E+ G I D +++ +++ AF++ +
Sbjct: 306 LITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALM 365
Query: 355 DGGRPGGDRIYGVF 368
G G+ +F
Sbjct: 366 QGEETVGEEDIRLF 379
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/314 (33%), Positives = 175/314 (55%), Gaps = 13/314 (4%)
Query: 64 LPRGSGIVTRRPLVLQLHK--TED---GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118
LPRGSGIVTR PLVL+L K ED G Y ++ + +D S V KEI + +
Sbjct: 95 LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAI 150
Query: 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN 178
G+ IS I L I S +V +LTLIDLPG+T+VAV QP I I+++++ Y+++
Sbjct: 151 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQE 210
Query: 179 SVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYR 236
++ L + P+N DIAT++A+ +A+EVDP G+RT G+LTK DL+DKGT +DV+ +
Sbjct: 211 TISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFH 270
Query: 237 LQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL--AGKMGSEYLAKLLSKH 294
L+ ++ + R Q +I + + A ++E+ +F P + L GK LA+ L+
Sbjct: 271 LKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSE 330
Query: 295 LESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHL 354
L + I +P + + I ++ + + E+ G I D +++ +++ AF++ +
Sbjct: 331 LITHICKSLPLLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALM 390
Query: 355 DGGRPGGDRIYGVF 368
G G+ +F
Sbjct: 391 QGEETVGEEDIRLF 404
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERT------FGVLTKLDL 219
E ++ YVEK +I AI+P + A KLARE TGE +GVLT+ L
Sbjct: 395 EERMKEYVEKSIGIITAINP---HVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQL 450
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 298 VIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYT 338
++ SR P SL+ K+ EL+ E+D +G+ +AV G L T
Sbjct: 64 LVLSRGPLSKSLLEKAGPELQEELDTVGQGVAVSMGTVLKT 104
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 254 RNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRS---RIPSITSLI 310
RN+ ++V R +E+ P++ ++A G E + + L HL + + + P IT+LI
Sbjct: 38 RNLWVLVVGRFPKEHRIGIPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLI 97
Query: 311 NKSIEELESEMDHLG-----RP-IAVDAGAQLYTILELCRAFDRIFK 351
N + + M+ G +P G + Y +L R F F+
Sbjct: 98 NSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENYNQYDLNRNFPDAFE 144
>pdb|2OMK|A Chain A, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
pdb|2OMK|B Chain B, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
Length = 231
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 159 PDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214
PD I+ D +S++ Y ++ +S+IL IS D T+D K + G R ++
Sbjct: 75 PDVIIGDGDSLLPEYKKRFSSIILQIS----DQETNDQTKAVHYLQSKGIRKIAIV 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,630,161
Number of Sequences: 62578
Number of extensions: 516278
Number of successful extensions: 1336
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1306
Number of HSP's gapped (non-prelim): 19
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)