Query 013508
Match_columns 441
No_of_seqs 335 out of 3010
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:33:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 7.8E-73 1.7E-77 588.1 29.5 427 1-438 1-436 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 3.5E-47 7.6E-52 352.4 24.1 239 4-254 1-239 (240)
3 PF01031 Dynamin_M: Dynamin ce 100.0 9.8E-37 2.1E-41 295.2 19.0 212 227-438 2-222 (295)
4 KOG0447 Dynamin-like GTP bindi 100.0 7.1E-32 1.5E-36 263.2 24.7 268 36-309 306-586 (980)
5 COG1159 Era GTPase [General fu 99.9 1.2E-27 2.7E-32 222.0 -0.1 237 37-339 5-244 (298)
6 PF00350 Dynamin_N: Dynamin fa 99.9 1.5E-22 3.2E-27 179.9 15.0 167 41-217 1-168 (168)
7 TIGR00436 era GTP-binding prot 99.8 5.3E-21 1.1E-25 183.1 11.3 234 40-339 2-236 (270)
8 PRK00089 era GTPase Era; Revie 99.8 7.2E-20 1.6E-24 177.4 11.7 234 38-339 5-241 (292)
9 PRK15494 era GTPase Era; Provi 99.8 5E-19 1.1E-23 174.3 11.9 235 39-339 53-288 (339)
10 KOG1423 Ras-like GTPase ERA [C 99.8 4.7E-19 1E-23 163.7 8.6 223 37-319 71-323 (379)
11 PF02421 FeoB_N: Ferrous iron 99.8 4.7E-19 1E-23 153.4 5.2 119 40-224 2-122 (156)
12 COG0370 FeoB Fe2+ transport sy 99.7 1.2E-17 2.7E-22 170.8 11.8 148 39-253 4-153 (653)
13 COG1160 Predicted GTPases [Gen 99.7 6.7E-17 1.4E-21 158.7 12.5 146 39-251 4-149 (444)
14 COG0486 ThdF Predicted GTPase 99.7 1.5E-15 3.2E-20 149.6 20.9 175 6-256 193-368 (454)
15 COG1084 Predicted GTPase [Gene 99.7 2.9E-16 6.3E-21 147.5 12.8 159 5-223 135-296 (346)
16 PRK12298 obgE GTPase CgtA; Rev 99.7 7.4E-16 1.6E-20 153.8 15.7 182 38-281 159-350 (390)
17 PRK09866 hypothetical protein; 99.7 1.5E-14 3.3E-19 147.6 21.9 46 37-82 68-113 (741)
18 COG0218 Predicted GTPase [Gene 99.6 2.4E-15 5.2E-20 133.1 12.3 128 37-224 23-152 (200)
19 PRK09554 feoB ferrous iron tra 99.6 3.5E-15 7.6E-20 160.3 15.7 157 39-258 4-162 (772)
20 TIGR03156 GTP_HflX GTP-binding 99.6 1.4E-14 2.9E-19 143.2 17.5 128 36-222 187-316 (351)
21 PRK12299 obgE GTPase CgtA; Rev 99.6 1.8E-14 3.8E-19 141.2 14.3 162 38-259 158-323 (335)
22 PRK11058 GTPase HflX; Provisio 99.6 2.5E-14 5.5E-19 144.5 15.7 128 36-222 195-324 (426)
23 COG1160 Predicted GTPases [Gen 99.6 7.3E-15 1.6E-19 144.4 10.5 157 37-251 177-335 (444)
24 cd01878 HflX HflX subfamily. 99.6 1.5E-13 3.2E-18 126.1 16.5 129 36-223 39-169 (204)
25 PRK05291 trmE tRNA modificatio 99.6 3.6E-13 7.8E-18 137.6 20.7 155 37-263 214-369 (449)
26 TIGR00450 mnmE_trmE_thdF tRNA 99.5 4E-13 8.7E-18 136.5 20.5 124 36-222 201-325 (442)
27 cd04163 Era Era subfamily. Er 99.5 8E-14 1.7E-18 122.2 13.0 124 38-223 3-127 (168)
28 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 9E-14 1.9E-18 126.7 13.5 125 40-223 2-132 (196)
29 TIGR03598 GTPase_YsxC ribosome 99.5 1E-13 2.3E-18 124.4 12.6 124 36-222 16-144 (179)
30 cd01887 IF2_eIF5B IF2/eIF5B (i 99.5 7.9E-14 1.7E-18 123.2 11.6 117 39-222 1-117 (168)
31 PRK00454 engB GTP-binding prot 99.5 1.2E-13 2.6E-18 125.6 12.7 125 36-223 22-151 (196)
32 cd01897 NOG NOG1 is a nucleola 99.5 2.2E-13 4.7E-18 120.6 13.7 25 39-63 1-25 (168)
33 PF01926 MMR_HSR1: 50S ribosom 99.5 1.5E-13 3.3E-18 114.2 11.4 115 40-216 1-116 (116)
34 cd01898 Obg Obg subfamily. Th 99.5 1.9E-13 4.1E-18 121.1 11.9 125 40-224 2-131 (170)
35 PRK03003 GTP-binding protein D 99.5 6.1E-13 1.3E-17 137.2 16.8 126 37-222 210-337 (472)
36 PRK12296 obgE GTPase CgtA; Rev 99.5 2.2E-13 4.8E-18 138.6 13.2 163 38-262 159-338 (500)
37 TIGR03594 GTPase_EngA ribosome 99.5 4.9E-13 1.1E-17 136.7 14.9 126 37-221 171-297 (429)
38 TIGR02729 Obg_CgtA Obg family 99.5 3.2E-13 7E-18 132.2 12.8 125 38-222 157-288 (329)
39 cd01868 Rab11_like Rab11-like. 99.5 4E-13 8.7E-18 118.6 12.3 153 38-256 3-157 (165)
40 PRK12297 obgE GTPase CgtA; Rev 99.5 5.9E-13 1.3E-17 133.8 14.7 123 38-220 158-287 (424)
41 cd01895 EngA2 EngA2 subfamily. 99.5 7.9E-13 1.7E-17 116.9 13.9 128 38-223 2-129 (174)
42 PRK03003 GTP-binding protein D 99.5 3.5E-13 7.6E-18 139.0 13.0 161 36-262 36-197 (472)
43 TIGR03594 GTPase_EngA ribosome 99.5 9.9E-13 2.1E-17 134.5 15.2 151 40-257 1-153 (429)
44 cd04112 Rab26 Rab26 subfamily. 99.5 8.8E-13 1.9E-17 119.6 12.8 117 140-269 50-168 (191)
45 cd01861 Rab6 Rab6 subfamily. 99.4 7.2E-13 1.6E-17 116.3 11.5 117 40-223 2-121 (161)
46 cd01866 Rab2 Rab2 subfamily. 99.4 1.4E-12 3.1E-17 115.7 13.0 153 37-256 3-158 (168)
47 PRK00093 GTP-binding protein D 99.4 9.7E-13 2.1E-17 134.8 13.5 127 37-222 172-299 (435)
48 cd01865 Rab3 Rab3 subfamily. 99.4 1.2E-12 2.5E-17 115.8 12.2 104 140-257 50-156 (165)
49 PRK04213 GTP-binding protein; 99.4 1.2E-12 2.7E-17 119.5 12.3 125 37-223 8-146 (201)
50 cd01867 Rab8_Rab10_Rab13_like 99.4 1.5E-12 3.3E-17 115.2 12.5 153 38-256 3-157 (167)
51 PRK00093 GTP-binding protein D 99.4 2.4E-12 5.2E-17 131.9 15.4 152 39-257 2-155 (435)
52 cd01894 EngA1 EngA1 subfamily. 99.4 7.5E-13 1.6E-17 115.3 10.0 77 140-223 45-121 (157)
53 cd04164 trmE TrmE (MnmE, ThdF, 99.4 4.4E-12 9.6E-17 110.3 14.8 120 40-223 3-123 (157)
54 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 2.2E-12 4.8E-17 114.0 13.0 104 140-256 51-156 (166)
55 COG3596 Predicted GTPase [Gene 99.4 2.1E-12 4.5E-17 119.1 12.9 124 36-223 36-164 (296)
56 cd01879 FeoB Ferrous iron tran 99.4 1.2E-12 2.6E-17 114.3 11.1 73 140-223 43-117 (158)
57 cd04145 M_R_Ras_like M-Ras/R-R 99.4 1.8E-12 3.9E-17 114.0 12.2 71 140-223 50-123 (164)
58 cd00880 Era_like Era (E. coli 99.4 3.1E-12 6.8E-17 110.8 13.6 78 139-224 44-121 (163)
59 cd04113 Rab4 Rab4 subfamily. 99.4 1.8E-12 3.8E-17 113.9 11.7 149 40-254 2-152 (161)
60 cd04119 RJL RJL (RabJ-Like) su 99.4 2.4E-12 5.1E-17 113.5 12.4 116 40-221 2-124 (168)
61 smart00175 RAB Rab subfamily o 99.4 2.5E-12 5.4E-17 113.1 12.3 116 40-222 2-120 (164)
62 cd04122 Rab14 Rab14 subfamily. 99.4 2.9E-12 6.2E-17 113.4 12.7 150 39-254 3-154 (166)
63 KOG1191 Mitochondrial GTPase [ 99.4 9.1E-12 2E-16 122.8 17.1 128 37-224 267-406 (531)
64 smart00173 RAS Ras subfamily o 99.4 2.9E-12 6.4E-17 112.8 12.5 150 40-256 2-154 (164)
65 cd04171 SelB SelB subfamily. 99.4 2.1E-12 4.6E-17 113.4 11.5 68 139-222 50-119 (164)
66 cd01862 Rab7 Rab7 subfamily. 99.4 2.1E-12 4.6E-17 114.5 11.5 116 40-221 2-123 (172)
67 cd01853 Toc34_like Toc34-like 99.4 5.1E-12 1.1E-16 118.9 14.5 129 37-224 30-166 (249)
68 cd04136 Rap_like Rap-like subf 99.4 2.5E-12 5.4E-17 113.0 11.7 70 140-222 49-121 (163)
69 COG2262 HflX GTPases [General 99.4 7.3E-12 1.6E-16 121.7 15.8 132 34-224 188-321 (411)
70 PRK09518 bifunctional cytidyla 99.4 4.3E-12 9.4E-17 137.0 15.7 126 37-222 449-576 (712)
71 cd00154 Rab Rab family. Rab G 99.4 1.9E-12 4.2E-17 112.4 10.6 115 39-220 1-118 (159)
72 cd04104 p47_IIGP_like p47 (47- 99.4 2.8E-12 6.2E-17 116.9 12.0 120 39-222 2-122 (197)
73 cd04157 Arl6 Arl6 subfamily. 99.4 3.5E-12 7.6E-17 111.9 11.9 71 139-222 44-119 (162)
74 cd01881 Obg_like The Obg-like 99.4 1.2E-12 2.6E-17 116.4 9.0 122 43-224 1-137 (176)
75 PRK09518 bifunctional cytidyla 99.4 2.2E-12 4.7E-17 139.3 12.5 160 37-262 274-434 (712)
76 TIGR00991 3a0901s02IAP34 GTP-b 99.4 9.4E-12 2E-16 118.9 15.4 127 36-223 36-169 (313)
77 cd04142 RRP22 RRP22 subfamily. 99.4 6.5E-12 1.4E-16 114.6 13.7 156 40-254 2-164 (198)
78 cd04138 H_N_K_Ras_like H-Ras/N 99.4 6.1E-12 1.3E-16 110.2 12.8 101 140-254 49-152 (162)
79 cd04139 RalA_RalB RalA/RalB su 99.4 5.2E-12 1.1E-16 110.9 12.3 150 40-256 2-154 (164)
80 cd00881 GTP_translation_factor 99.4 4.3E-12 9.3E-17 114.2 11.9 69 139-222 61-129 (189)
81 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 8.3E-12 1.8E-16 112.5 13.5 115 40-221 5-123 (183)
82 cd04101 RabL4 RabL4 (Rab-like4 99.4 6.7E-12 1.5E-16 110.5 12.5 72 138-223 50-123 (164)
83 cd01860 Rab5_related Rab5-rela 99.4 6.4E-12 1.4E-16 110.4 12.2 117 40-222 3-121 (163)
84 cd01864 Rab19 Rab19 subfamily. 99.4 5.4E-12 1.2E-16 111.4 11.8 120 38-223 3-124 (165)
85 cd04175 Rap1 Rap1 subgroup. T 99.4 6.2E-12 1.4E-16 110.8 12.0 71 139-222 48-121 (164)
86 cd04114 Rab30 Rab30 subfamily. 99.4 6.8E-12 1.5E-16 111.1 12.3 121 37-223 6-128 (169)
87 cd01890 LepA LepA subfamily. 99.4 4.7E-12 1E-16 113.2 11.4 69 138-221 65-133 (179)
88 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.2E-11 2.6E-16 108.4 13.4 111 40-221 1-115 (160)
89 cd04106 Rab23_lke Rab23-like s 99.4 5.6E-12 1.2E-16 110.7 11.2 70 140-223 51-122 (162)
90 cd04123 Rab21 Rab21 subfamily. 99.4 8.7E-12 1.9E-16 109.2 12.2 117 40-222 2-120 (162)
91 PRK15467 ethanolamine utilizat 99.3 1.4E-11 3E-16 108.3 12.6 104 144-262 41-145 (158)
92 cd04109 Rab28 Rab28 subfamily. 99.3 7.6E-12 1.6E-16 115.7 11.5 155 40-259 2-161 (215)
93 cd01876 YihA_EngB The YihA (En 99.3 8.5E-12 1.8E-16 109.6 11.2 78 141-223 46-126 (170)
94 smart00178 SAR Sar1p-like memb 99.3 1.2E-11 2.7E-16 111.4 12.2 114 37-221 16-132 (184)
95 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.5E-11 3.3E-16 112.5 12.8 108 139-260 49-164 (201)
96 cd04127 Rab27A Rab27a subfamil 99.3 8.9E-12 1.9E-16 111.6 11.1 104 140-256 63-169 (180)
97 cd04159 Arl10_like Arl10-like 99.3 1.7E-11 3.6E-16 106.6 12.5 113 40-223 1-117 (159)
98 cd04151 Arl1 Arl1 subfamily. 99.3 1.1E-11 2.3E-16 108.8 11.1 71 139-222 42-115 (158)
99 cd04144 Ras2 Ras2 subfamily. 99.3 1.3E-11 2.8E-16 111.8 11.8 110 140-262 47-161 (190)
100 cd04111 Rab39 Rab39 subfamily. 99.3 1.8E-11 3.8E-16 112.9 12.9 159 39-262 3-164 (211)
101 cd04176 Rap2 Rap2 subgroup. T 99.3 1.1E-11 2.3E-16 109.1 10.9 116 40-222 3-121 (163)
102 PLN03118 Rab family protein; P 99.3 2E-11 4.4E-16 112.5 12.9 162 37-265 13-178 (211)
103 PF05049 IIGP: Interferon-indu 99.3 5.5E-12 1.2E-16 123.5 9.6 131 7-219 17-153 (376)
104 cd04140 ARHI_like ARHI subfami 99.3 1.5E-11 3.2E-16 108.7 11.3 104 139-255 48-156 (165)
105 cd04125 RabA_like RabA-like su 99.3 2.7E-11 5.8E-16 109.5 13.3 158 39-262 1-160 (188)
106 cd01893 Miro1 Miro1 subfamily. 99.3 2.4E-11 5.2E-16 107.5 12.4 115 40-223 2-119 (166)
107 cd04160 Arfrp1 Arfrp1 subfamil 99.3 2E-11 4.3E-16 107.8 11.8 70 139-222 49-122 (167)
108 cd04124 RabL2 RabL2 subfamily. 99.3 1.9E-11 4E-16 107.7 11.6 114 40-220 2-117 (161)
109 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 2.4E-11 5.2E-16 108.1 12.3 117 40-222 2-121 (170)
110 PTZ00369 Ras-like protein; Pro 99.3 2.6E-11 5.6E-16 109.8 12.7 117 38-221 5-124 (189)
111 cd04120 Rab12 Rab12 subfamily. 99.3 3E-11 6.5E-16 110.4 13.1 117 40-222 2-120 (202)
112 cd00876 Ras Ras family. The R 99.3 1.6E-11 3.5E-16 107.2 10.7 116 40-222 1-119 (160)
113 cd04154 Arl2 Arl2 subfamily. 99.3 6E-11 1.3E-15 105.7 14.5 115 37-222 13-130 (173)
114 TIGR02528 EutP ethanolamine ut 99.3 3E-11 6.6E-16 103.8 12.1 24 40-63 2-25 (142)
115 cd04110 Rab35 Rab35 subfamily. 99.3 1.9E-11 4.1E-16 111.7 11.4 158 37-262 5-165 (199)
116 cd04158 ARD1 ARD1 subfamily. 99.3 2.8E-11 6.1E-16 107.5 12.1 70 139-222 42-115 (169)
117 cd01863 Rab18 Rab18 subfamily. 99.3 4.3E-11 9.2E-16 105.0 13.1 117 40-223 2-122 (161)
118 cd00878 Arf_Arl Arf (ADP-ribos 99.3 3.5E-11 7.5E-16 105.3 12.5 72 139-223 42-116 (158)
119 PLN03110 Rab GTPase; Provision 99.3 3.2E-11 6.8E-16 111.7 12.7 120 37-222 11-132 (216)
120 cd04177 RSR1 RSR1 subgroup. R 99.3 3.3E-11 7.1E-16 106.8 12.0 71 140-223 49-122 (168)
121 cd04161 Arl2l1_Arl13_like Arl2 99.3 3E-11 6.5E-16 107.1 11.8 71 139-223 42-116 (167)
122 cd04115 Rab33B_Rab33A Rab33B/R 99.3 2.2E-11 4.7E-16 108.3 10.8 145 39-248 3-150 (170)
123 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.3 3.8E-11 8.3E-16 107.0 12.3 152 40-259 4-159 (172)
124 cd04137 RheB Rheb (Ras Homolog 99.3 3.7E-11 8E-16 107.6 12.1 154 40-261 3-160 (180)
125 cd04149 Arf6 Arf6 subfamily. 99.3 2.5E-11 5.4E-16 107.8 10.8 113 37-221 8-124 (168)
126 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 2.4E-11 5.2E-16 108.5 10.7 113 38-221 15-130 (174)
127 PLN03108 Rab family protein; P 99.3 5E-11 1.1E-15 109.9 13.0 153 38-256 6-160 (210)
128 PF04548 AIG1: AIG1 family; I 99.3 1.6E-11 3.5E-16 113.2 9.6 123 40-224 2-133 (212)
129 PF00009 GTP_EFTU: Elongation 99.3 3.5E-12 7.6E-17 115.4 5.0 69 137-220 67-135 (188)
130 cd04116 Rab9 Rab9 subfamily. 99.3 6.5E-11 1.4E-15 105.0 13.0 119 37-221 4-128 (170)
131 KOG1954 Endocytosis/signaling 99.3 6.8E-12 1.5E-16 119.1 6.7 174 36-229 56-232 (532)
132 cd04117 Rab15 Rab15 subfamily. 99.3 5.8E-11 1.3E-15 104.5 12.3 149 40-254 2-152 (161)
133 cd04147 Ras_dva Ras-dva subfam 99.3 4.9E-11 1.1E-15 108.8 11.9 69 140-222 47-119 (198)
134 cd00157 Rho Rho (Ras homology) 99.3 1.8E-11 3.9E-16 108.4 8.8 70 140-223 48-120 (171)
135 cd01896 DRG The developmentall 99.3 4.4E-11 9.6E-16 111.9 11.7 24 40-63 2-25 (233)
136 cd04118 Rab24 Rab24 subfamily. 99.3 5.7E-11 1.2E-15 107.8 12.1 69 140-222 50-120 (193)
137 cd01884 EF_Tu EF-Tu subfamily. 99.3 2E-11 4.2E-16 111.0 8.9 71 137-222 62-133 (195)
138 cd04166 CysN_ATPS CysN_ATPS su 99.2 2.8E-11 6E-16 111.4 9.8 81 124-222 62-145 (208)
139 cd01891 TypA_BipA TypA (tyrosi 99.2 7.5E-11 1.6E-15 107.2 12.4 70 138-222 63-132 (194)
140 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 1.4E-10 3E-15 102.5 13.7 113 40-223 1-115 (164)
141 cd00879 Sar1 Sar1 subfamily. 99.2 9.7E-11 2.1E-15 105.9 13.0 114 37-221 18-134 (190)
142 TIGR00437 feoB ferrous iron tr 99.2 5.2E-11 1.1E-15 125.4 12.5 110 140-261 41-152 (591)
143 PRK09602 translation-associate 99.2 2.1E-10 4.7E-15 114.9 16.1 39 39-77 2-40 (396)
144 cd04146 RERG_RasL11_like RERG/ 99.2 4.4E-11 9.5E-16 105.6 10.0 71 140-222 47-121 (165)
145 KOG0448 Mitofusin 1 GTPase, in 99.2 8.8E-10 1.9E-14 112.6 20.4 182 10-227 94-281 (749)
146 smart00177 ARF ARF-like small 99.2 1.2E-10 2.6E-15 104.1 12.5 70 139-222 56-129 (175)
147 PTZ00133 ADP-ribosylation fact 99.2 1.7E-10 3.8E-15 103.8 13.0 69 139-221 60-132 (182)
148 cd04150 Arf1_5_like Arf1-Arf5- 99.2 8.8E-11 1.9E-15 103.2 10.8 70 139-222 43-116 (159)
149 cd01889 SelB_euk SelB subfamil 99.2 9.1E-11 2E-15 106.5 11.1 67 139-222 67-135 (192)
150 cd04148 RGK RGK subfamily. Th 99.2 2.3E-10 4.9E-15 106.3 13.7 110 139-263 49-162 (221)
151 TIGR00487 IF-2 translation ini 99.2 1.6E-10 3.4E-15 121.3 14.0 119 34-221 83-201 (587)
152 cd04121 Rab40 Rab40 subfamily. 99.2 2.1E-10 4.7E-15 103.7 12.7 158 37-261 5-164 (189)
153 TIGR00231 small_GTP small GTP- 99.2 2.3E-10 5E-15 98.9 12.3 29 39-68 2-30 (161)
154 KOG1490 GTP-binding protein CR 99.2 1.9E-11 4.1E-16 120.4 5.9 160 4-223 134-297 (620)
155 cd04155 Arl3 Arl3 subfamily. 99.2 2.6E-10 5.6E-15 101.3 12.8 115 37-222 13-130 (173)
156 smart00174 RHO Rho (Ras homolo 99.2 8.4E-11 1.8E-15 104.6 9.6 70 140-223 46-118 (174)
157 CHL00189 infB translation init 99.2 9.3E-11 2E-15 124.8 11.5 161 34-260 240-406 (742)
158 cd01850 CDC_Septin CDC/Septin. 99.2 2.5E-10 5.4E-15 109.4 13.4 137 40-223 6-159 (276)
159 cd04132 Rho4_like Rho4-like su 99.2 1.6E-10 3.4E-15 104.2 11.3 116 40-222 2-120 (187)
160 PLN00223 ADP-ribosylation fact 99.2 4.6E-10 1E-14 100.9 14.2 113 38-222 17-133 (181)
161 cd00877 Ran Ran (Ras-related n 99.2 1.6E-10 3.6E-15 102.3 11.0 106 140-261 49-156 (166)
162 cd01886 EF-G Elongation factor 99.2 1.1E-10 2.5E-15 111.3 10.6 69 138-221 62-130 (270)
163 cd00882 Ras_like_GTPase Ras-li 99.2 1.4E-10 3E-15 99.1 10.2 72 139-224 44-119 (157)
164 PLN03071 GTP-binding nuclear p 99.2 1.2E-10 2.7E-15 107.9 10.5 106 140-261 62-169 (219)
165 TIGR00491 aIF-2 translation in 99.2 3.1E-10 6.6E-15 118.9 14.5 133 37-221 3-135 (590)
166 cd01899 Ygr210 Ygr210 subfamil 99.2 1.7E-10 3.6E-15 112.3 11.7 110 41-187 1-110 (318)
167 TIGR00475 selB selenocysteine- 99.2 1.5E-10 3.4E-15 121.7 12.1 106 140-262 50-164 (581)
168 cd04165 GTPBP1_like GTPBP1-lik 99.2 9.9E-11 2.2E-15 108.7 9.3 75 134-222 78-153 (224)
169 PF10662 PduV-EutP: Ethanolami 99.2 1.9E-10 4.2E-15 97.6 10.1 24 40-63 3-26 (143)
170 cd04126 Rab20 Rab20 subfamily. 99.2 4.6E-10 9.9E-15 103.9 13.1 111 40-221 2-114 (220)
171 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.4E-10 5.3E-15 102.8 10.8 68 140-221 49-118 (182)
172 cd04143 Rhes_like Rhes_like su 99.2 5.3E-10 1.2E-14 105.4 13.5 106 140-259 48-166 (247)
173 cd01892 Miro2 Miro2 subfamily. 99.1 3.6E-10 7.8E-15 100.4 11.5 120 37-222 3-123 (169)
174 KOG1489 Predicted GTP-binding 99.1 1E-10 2.2E-15 109.6 7.9 151 38-251 196-354 (366)
175 cd01874 Cdc42 Cdc42 subfamily. 99.1 2.5E-10 5.4E-15 102.1 10.2 115 40-222 3-120 (175)
176 PRK05306 infB translation init 99.1 3.7E-10 8.1E-15 121.3 12.7 156 34-259 286-447 (787)
177 cd04168 TetM_like Tet(M)-like 99.1 2.6E-10 5.6E-15 106.9 9.9 69 138-221 62-130 (237)
178 TIGR00993 3a0901s04IAP86 chlor 99.1 5.9E-10 1.3E-14 114.8 13.2 125 39-222 119-251 (763)
179 cd01870 RhoA_like RhoA-like su 99.1 5.4E-10 1.2E-14 99.4 11.3 116 39-222 2-120 (175)
180 cd01888 eIF2_gamma eIF2-gamma 99.1 3.7E-10 8E-15 103.5 10.4 68 140-222 83-152 (203)
181 cd04130 Wrch_1 Wrch-1 subfamil 99.1 3.1E-10 6.7E-15 101.1 9.3 69 140-222 48-119 (173)
182 cd04169 RF3 RF3 subfamily. Pe 99.1 8.4E-10 1.8E-14 105.2 12.7 70 138-222 69-138 (267)
183 cd04105 SR_beta Signal recogni 99.1 9.5E-10 2.1E-14 100.8 12.3 117 39-222 1-124 (203)
184 cd01885 EF2 EF2 (for archaea a 99.1 7.7E-10 1.7E-14 102.4 11.3 67 139-220 72-138 (222)
185 cd04135 Tc10 TC10 subfamily. 99.1 1.2E-09 2.5E-14 97.2 12.0 115 40-222 2-119 (174)
186 cd01871 Rac1_like Rac1-like su 99.1 1.8E-09 3.9E-14 96.4 13.1 69 140-222 49-120 (174)
187 cd04134 Rho3 Rho3 subfamily. 99.1 5.3E-10 1.2E-14 101.2 9.5 70 140-223 48-120 (189)
188 cd04170 EF-G_bact Elongation f 99.1 5.4E-10 1.2E-14 106.9 9.7 70 138-222 62-131 (268)
189 cd04167 Snu114p Snu114p subfam 99.1 1E-09 2.2E-14 101.4 11.1 67 139-220 70-136 (213)
190 cd04133 Rop_like Rop subfamily 99.0 1.2E-09 2.5E-14 97.8 10.3 115 40-222 3-120 (176)
191 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.0 4.2E-10 9.1E-15 98.3 7.0 121 38-224 22-145 (221)
192 CHL00071 tufA elongation facto 99.0 5.8E-10 1.3E-14 113.0 9.2 71 138-223 73-144 (409)
193 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 2.9E-09 6.2E-14 99.3 12.6 117 37-221 12-131 (232)
194 PRK10512 selenocysteinyl-tRNA- 99.0 1.1E-09 2.4E-14 115.8 11.0 111 137-262 48-164 (614)
195 PRK12317 elongation factor 1-a 99.0 2.3E-09 5E-14 109.4 12.6 144 38-221 6-153 (425)
196 PTZ00258 GTP-binding protein; 99.0 1.9E-09 4E-14 107.1 11.3 104 36-186 19-125 (390)
197 PLN03127 Elongation factor Tu; 99.0 9.1E-10 2E-14 112.3 9.2 131 38-222 61-192 (447)
198 PF00071 Ras: Ras family; Int 99.0 2.2E-09 4.7E-14 94.2 10.2 148 40-253 1-150 (162)
199 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 2.4E-09 5.1E-14 96.4 10.6 115 39-221 6-123 (182)
200 TIGR01393 lepA GTP-binding pro 99.0 1.9E-09 4E-14 113.7 11.3 132 38-221 3-136 (595)
201 cd01900 YchF YchF subfamily. 99.0 1.4E-09 3.1E-14 103.3 9.4 37 41-77 1-37 (274)
202 smart00176 RAN Ran (Ras-relate 99.0 1.8E-09 4E-14 98.5 9.6 109 139-263 43-153 (200)
203 cd04131 Rnd Rnd subfamily. Th 99.0 3.1E-09 6.7E-14 95.3 10.7 114 40-221 3-119 (178)
204 cd01875 RhoG RhoG subfamily. 99.0 5.6E-09 1.2E-13 94.7 12.5 116 39-222 4-122 (191)
205 PRK04004 translation initiatio 99.0 2.9E-09 6.3E-14 112.0 11.4 66 140-220 71-136 (586)
206 COG0536 Obg Predicted GTPase [ 99.0 3.6E-09 7.9E-14 100.5 10.5 127 40-226 161-294 (369)
207 PF00025 Arf: ADP-ribosylation 99.0 3.9E-09 8.5E-14 94.3 9.8 114 37-222 13-130 (175)
208 PRK05433 GTP-binding protein L 98.9 3.4E-09 7.4E-14 111.9 10.8 133 37-221 6-140 (600)
209 PRK09601 GTP-binding protein Y 98.9 4.8E-09 1.1E-13 102.9 11.1 101 39-186 3-106 (364)
210 PRK09435 membrane ATPase/prote 98.9 2.7E-08 5.9E-13 97.0 16.2 25 37-61 55-79 (332)
211 PRK12739 elongation factor G; 98.9 4.1E-09 9E-14 113.6 11.1 134 37-222 7-140 (691)
212 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 7.1E-09 1.5E-13 96.1 11.0 115 40-222 3-120 (222)
213 PRK12735 elongation factor Tu; 98.9 3.1E-09 6.6E-14 107.3 9.2 71 137-222 72-143 (396)
214 TIGR00484 EF-G translation elo 98.9 5.6E-09 1.2E-13 112.7 11.8 134 37-222 9-142 (689)
215 KOG0078 GTP-binding protein SE 98.9 5E-09 1.1E-13 93.2 9.3 153 35-253 9-163 (207)
216 TIGR00485 EF-Tu translation el 98.9 2.3E-09 5.1E-14 108.2 7.9 132 38-223 12-144 (394)
217 PRK00007 elongation factor G; 98.9 5.1E-09 1.1E-13 112.9 10.9 135 37-223 9-143 (693)
218 cd01883 EF1_alpha Eukaryotic e 98.9 3E-09 6.6E-14 98.6 7.8 80 125-221 63-151 (219)
219 PRK00049 elongation factor Tu; 98.9 2.7E-09 5.8E-14 107.7 7.9 69 138-221 73-142 (396)
220 PRK12736 elongation factor Tu; 98.9 3.7E-09 8.1E-14 106.6 8.9 70 138-222 73-143 (394)
221 COG1100 GTPase SAR1 and relate 98.9 1E-08 2.2E-13 94.8 11.1 118 39-224 6-128 (219)
222 COG1163 DRG Predicted GTPase [ 98.9 3.8E-09 8.3E-14 99.6 7.9 90 36-186 61-150 (365)
223 KOG0084 GTPase Rab1/YPT1, smal 98.9 8.5E-09 1.8E-13 90.5 9.0 124 35-224 6-131 (205)
224 TIGR01394 TypA_BipA GTP-bindin 98.9 6E-09 1.3E-13 109.7 9.4 70 138-222 62-131 (594)
225 cd04102 RabL3 RabL3 (Rab-like3 98.9 1.8E-08 4E-13 92.0 11.3 70 140-222 54-144 (202)
226 TIGR02034 CysN sulfate adenyly 98.9 1.8E-08 4E-13 101.9 12.0 70 138-223 78-149 (406)
227 PF08477 Miro: Miro-like prote 98.9 5.3E-09 1.1E-13 86.9 6.7 24 40-63 1-24 (119)
228 cd04129 Rho2 Rho2 subfamily. 98.9 1.2E-08 2.6E-13 92.1 9.6 68 140-221 49-119 (187)
229 TIGR03680 eif2g_arch translati 98.9 7.2E-09 1.6E-13 105.0 9.0 69 139-222 79-149 (406)
230 PRK05124 cysN sulfate adenylyl 98.9 4.2E-08 9.1E-13 101.0 14.7 148 36-223 25-176 (474)
231 PF09439 SRPRB: Signal recogni 98.9 6.7E-09 1.5E-13 92.2 7.6 118 37-222 2-127 (181)
232 cd01882 BMS1 Bms1. Bms1 is an 98.9 1.2E-08 2.7E-13 94.9 9.7 71 135-223 78-149 (225)
233 PRK05506 bifunctional sulfate 98.8 9.1E-09 2E-13 110.0 9.9 69 137-221 101-171 (632)
234 PRK00741 prfC peptide chain re 98.8 2E-08 4.4E-13 104.3 12.0 70 138-222 77-146 (526)
235 cd01873 RhoBTB RhoBTB subfamil 98.8 1.9E-08 4.1E-13 91.5 10.4 67 139-221 65-134 (195)
236 TIGR00503 prfC peptide chain r 98.8 1.9E-08 4.1E-13 104.6 11.2 69 138-221 78-146 (527)
237 PRK10218 GTP-binding protein; 98.8 2.6E-08 5.7E-13 104.8 12.4 69 138-221 66-134 (607)
238 TIGR02836 spore_IV_A stage IV 98.8 5.9E-08 1.3E-12 95.2 13.4 150 38-222 17-195 (492)
239 KOG0092 GTPase Rab5/YPT51 and 98.8 5.6E-09 1.2E-13 91.3 5.3 157 39-263 6-166 (200)
240 PLN03126 Elongation factor Tu; 98.8 1.6E-08 3.5E-13 103.8 9.5 132 37-222 80-212 (478)
241 TIGR00483 EF-1_alpha translati 98.8 2.2E-08 4.7E-13 102.2 10.2 69 138-221 83-155 (426)
242 KOG0073 GTP-binding ADP-ribosy 98.8 8.8E-08 1.9E-12 81.5 11.8 157 38-266 16-180 (185)
243 PF00735 Septin: Septin; Inte 98.8 2.1E-08 4.5E-13 96.1 9.0 139 40-224 6-159 (281)
244 KOG2486 Predicted GTPase [Gene 98.8 3.5E-08 7.6E-13 91.2 10.0 128 36-223 134-264 (320)
245 TIGR00490 aEF-2 translation el 98.8 4.1E-08 8.9E-13 106.3 12.0 70 137-221 83-152 (720)
246 cd04103 Centaurin_gamma Centau 98.8 3.7E-08 8E-13 86.5 9.3 63 140-220 47-112 (158)
247 PLN00023 GTP-binding protein; 98.8 4.4E-08 9.5E-13 94.4 10.3 70 140-222 83-166 (334)
248 PTZ00132 GTP-binding nuclear p 98.7 1.6E-07 3.5E-12 86.7 13.1 101 139-256 57-160 (215)
249 PRK13351 elongation factor G; 98.7 4E-08 8.7E-13 106.2 9.5 70 138-222 71-140 (687)
250 COG2229 Predicted GTPase [Gene 98.7 2.1E-07 4.6E-12 81.1 11.8 130 37-231 9-147 (187)
251 KOG0093 GTPase Rab3, small G p 98.7 7.7E-08 1.7E-12 80.2 8.7 125 33-223 16-142 (193)
252 PRK04000 translation initiatio 98.7 6.8E-08 1.5E-12 97.9 10.4 23 39-61 10-32 (411)
253 KOG0075 GTP-binding ADP-ribosy 98.7 1E-07 2.2E-12 79.5 8.8 117 37-223 19-138 (186)
254 KOG1145 Mitochondrial translat 98.7 2E-07 4.4E-12 93.4 12.4 149 34-253 149-302 (683)
255 COG4917 EutP Ethanolamine util 98.7 3.8E-08 8.2E-13 80.0 5.8 29 40-68 3-31 (148)
256 PRK07560 elongation factor EF- 98.7 1.4E-07 2.9E-12 102.5 11.8 133 37-220 19-152 (731)
257 PTZ00416 elongation factor 2; 98.6 5.3E-08 1.1E-12 106.9 7.9 66 140-220 92-157 (836)
258 PLN00116 translation elongatio 98.6 1.4E-07 3.1E-12 103.7 11.3 67 139-220 97-163 (843)
259 PTZ00141 elongation factor 1- 98.6 8.3E-08 1.8E-12 98.1 8.7 66 137-219 82-157 (446)
260 TIGR00750 lao LAO/AO transport 98.6 1.9E-06 4.2E-11 83.7 17.9 25 37-61 33-57 (300)
261 cd01858 NGP_1 NGP-1. Autoanti 98.6 5.8E-08 1.3E-12 85.1 5.7 28 39-66 103-130 (157)
262 PTZ00327 eukaryotic translatio 98.6 2.4E-07 5.3E-12 94.5 10.7 68 140-222 117-186 (460)
263 cd04178 Nucleostemin_like Nucl 98.6 6.5E-08 1.4E-12 86.0 5.6 30 38-67 117-146 (172)
264 COG0532 InfB Translation initi 98.6 4.9E-07 1.1E-11 91.2 12.1 117 36-223 3-123 (509)
265 KOG0095 GTPase Rab30, small G 98.6 1.5E-07 3.3E-12 78.6 7.1 123 36-224 5-129 (213)
266 KOG0410 Predicted GTP binding 98.6 1.3E-07 2.9E-12 89.1 7.0 128 35-221 175-308 (410)
267 cd01849 YlqF_related_GTPase Yl 98.6 9.1E-08 2E-12 83.7 5.7 31 37-67 99-129 (155)
268 cd01855 YqeH YqeH. YqeH is an 98.5 1.2E-07 2.6E-12 85.9 5.9 25 39-63 128-152 (190)
269 KOG0098 GTPase Rab2, small G p 98.5 4.8E-07 1E-11 78.7 9.2 122 36-223 4-127 (216)
270 PRK12740 elongation factor G; 98.5 3.8E-07 8.1E-12 98.5 9.7 70 138-222 58-127 (668)
271 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.1E-07 6.7E-12 79.0 6.7 25 39-63 84-108 (141)
272 KOG0070 GTP-binding ADP-ribosy 98.5 3.3E-07 7.1E-12 80.0 6.7 152 38-261 17-175 (181)
273 COG0012 Predicted GTPase, prob 98.5 2.6E-07 5.6E-12 89.6 6.7 105 39-186 3-107 (372)
274 PF03308 ArgK: ArgK protein; 98.5 3.9E-07 8.5E-12 84.4 7.5 24 37-60 28-51 (266)
275 TIGR01425 SRP54_euk signal rec 98.5 1.1E-06 2.3E-11 88.4 10.9 81 139-230 182-262 (429)
276 PLN00043 elongation factor 1-a 98.5 5.1E-07 1.1E-11 92.3 8.7 72 136-220 81-158 (447)
277 KOG2655 Septin family protein 98.4 1.4E-06 2.9E-11 84.8 10.8 83 140-224 79-175 (366)
278 KOG0394 Ras-related GTPase [Ge 98.4 2.2E-07 4.7E-12 80.7 4.7 121 36-222 7-133 (210)
279 KOG0080 GTPase Rab18, small G 98.4 2.2E-07 4.7E-12 78.8 4.6 118 37-221 10-131 (209)
280 cd01851 GBP Guanylate-binding 98.4 1.3E-06 2.8E-11 81.2 10.1 38 37-74 6-46 (224)
281 COG5256 TEF1 Translation elong 98.4 1.1E-06 2.3E-11 86.1 9.8 146 39-223 8-161 (428)
282 PRK11889 flhF flagellar biosyn 98.4 5.1E-06 1.1E-10 82.0 14.4 156 38-231 241-401 (436)
283 COG5019 CDC3 Septin family pro 98.4 1.4E-06 3.1E-11 84.0 10.3 83 140-224 82-179 (373)
284 COG1703 ArgK Putative periplas 98.4 1.3E-05 2.7E-10 75.6 15.4 24 37-60 50-73 (323)
285 PRK13768 GTPase; Provisional 98.4 3.1E-06 6.8E-11 80.1 11.1 76 140-224 97-179 (253)
286 KOG0091 GTPase Rab39, small G 98.3 1E-06 2.2E-11 75.0 6.4 159 35-259 5-168 (213)
287 KOG3883 Ras family small GTPas 98.3 1.1E-05 2.3E-10 68.1 11.8 77 140-230 60-141 (198)
288 PF00448 SRP54: SRP54-type pro 98.3 1E-06 2.2E-11 80.0 6.2 82 139-231 83-164 (196)
289 KOG1491 Predicted GTP-binding 98.3 1.1E-06 2.4E-11 83.5 6.6 103 37-186 19-124 (391)
290 TIGR00092 GTP-binding protein 98.3 3.3E-06 7.1E-11 83.2 9.9 104 39-186 3-107 (368)
291 KOG0087 GTPase Rab11/YPT3, sma 98.3 2E-06 4.3E-11 76.6 7.5 120 36-221 12-133 (222)
292 COG0480 FusA Translation elong 98.3 1.8E-06 3.8E-11 91.9 8.4 137 36-223 8-144 (697)
293 COG1161 Predicted GTPases [Gen 98.3 9.3E-07 2E-11 86.6 5.9 32 39-75 133-164 (322)
294 COG0699 Predicted GTPases (dyn 98.3 2.6E-06 5.7E-11 89.7 9.7 304 91-437 4-307 (546)
295 KOG0090 Signal recognition par 98.3 2.6E-06 5.6E-11 76.0 7.8 70 141-223 83-161 (238)
296 PRK12288 GTPase RsgA; Reviewed 98.3 4.5E-06 9.8E-11 82.4 9.8 25 40-64 207-231 (347)
297 KOG1532 GTPase XAB1, interacts 98.2 1.1E-05 2.4E-10 74.7 11.0 154 36-223 17-197 (366)
298 cd03112 CobW_like The function 98.2 8.2E-06 1.8E-10 71.6 9.9 23 39-61 1-23 (158)
299 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.7E-06 3.8E-11 83.5 6.1 29 37-65 120-148 (287)
300 TIGR03596 GTPase_YlqF ribosome 98.2 1.6E-06 3.5E-11 83.3 5.9 30 37-66 117-146 (276)
301 TIGR00157 ribosome small subun 98.2 6.7E-06 1.5E-10 77.5 9.8 25 39-63 121-145 (245)
302 KOG0395 Ras-related GTPase [Ge 98.2 8.8E-06 1.9E-10 73.9 10.2 119 38-223 3-124 (196)
303 PRK12289 GTPase RsgA; Reviewed 98.2 2.9E-06 6.2E-11 83.8 7.4 26 40-65 174-199 (352)
304 PRK12726 flagellar biosynthesi 98.2 1.3E-05 2.8E-10 78.9 11.5 156 38-231 206-366 (407)
305 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 6.1E-06 1.3E-10 76.6 8.8 120 40-223 1-127 (232)
306 PRK06731 flhF flagellar biosyn 98.2 3.9E-05 8.4E-10 73.0 14.2 82 139-231 154-235 (270)
307 cd01856 YlqF YlqF. Proteins o 98.2 3.5E-06 7.5E-11 74.9 6.6 27 37-63 114-140 (171)
308 PRK14723 flhF flagellar biosyn 98.2 6.8E-06 1.5E-10 87.8 9.5 154 40-231 187-347 (767)
309 PRK14974 cell division protein 98.2 1.8E-05 4E-10 77.5 11.7 82 139-231 222-303 (336)
310 PF03193 DUF258: Protein of un 98.2 1.9E-06 4.1E-11 75.1 4.2 25 39-63 36-60 (161)
311 KOG1707 Predicted Ras related/ 98.2 1.1E-05 2.3E-10 82.0 10.1 120 37-224 8-132 (625)
312 TIGR03597 GTPase_YqeH ribosome 98.1 2.8E-06 6E-11 84.7 5.5 24 39-62 155-178 (360)
313 PRK13796 GTPase YqeH; Provisio 98.1 2.4E-06 5.2E-11 85.2 5.0 24 39-62 161-184 (365)
314 KOG0079 GTP-binding protein H- 98.1 1.5E-06 3.3E-11 72.7 2.8 71 139-223 56-128 (198)
315 PRK10416 signal recognition pa 98.1 3.7E-05 8E-10 75.1 13.0 83 139-230 196-282 (318)
316 PRK14722 flhF flagellar biosyn 98.1 7.1E-06 1.5E-10 81.3 7.9 23 39-61 138-160 (374)
317 KOG1486 GTP-binding protein DR 98.1 3.6E-06 7.7E-11 76.8 5.0 26 37-62 61-86 (364)
318 cd01859 MJ1464 MJ1464. This f 98.1 1.4E-05 3E-10 69.8 8.5 26 38-63 101-126 (156)
319 KOG0462 Elongation factor-type 98.1 1.1E-05 2.4E-10 81.3 8.4 134 37-222 59-192 (650)
320 KOG1424 Predicted GTP-binding 98.1 2.6E-06 5.7E-11 85.1 4.0 33 38-75 314-346 (562)
321 PTZ00099 rab6; Provisional 98.1 8.3E-06 1.8E-10 72.9 6.9 117 139-269 28-147 (176)
322 KOG1547 Septin CDC10 and relat 98.1 1.6E-05 3.4E-10 72.2 8.5 81 140-222 104-199 (336)
323 KOG0086 GTPase Rab4, small G p 98.0 2E-05 4.3E-10 66.4 7.8 122 36-223 7-130 (214)
324 PRK00098 GTPase RsgA; Reviewed 98.0 1.8E-05 3.9E-10 76.8 8.6 25 39-63 165-189 (298)
325 COG1217 TypA Predicted membran 98.0 1.1E-05 2.3E-10 79.8 6.8 71 138-223 66-136 (603)
326 PF03029 ATP_bind_1: Conserved 98.0 6E-06 1.3E-10 77.3 4.9 35 43-83 1-35 (238)
327 KOG4252 GTP-binding protein [S 98.0 1.4E-06 3.1E-11 75.2 0.5 68 141-223 70-140 (246)
328 PRK12724 flagellar biosynthesi 98.0 3.9E-05 8.5E-10 76.7 10.4 84 139-231 299-383 (432)
329 PRK14721 flhF flagellar biosyn 98.0 0.00012 2.6E-09 73.8 13.9 157 38-231 191-350 (420)
330 TIGR00064 ftsY signal recognit 98.0 8.5E-05 1.8E-09 71.0 12.2 84 139-231 154-241 (272)
331 PRK05703 flhF flagellar biosyn 98.0 0.00012 2.7E-09 74.3 13.7 82 140-231 300-381 (424)
332 COG0050 TufB GTPases - transla 98.0 6.9E-05 1.5E-09 70.2 10.6 129 40-223 14-144 (394)
333 cd01854 YjeQ_engC YjeQ/EngC. 98.0 3.7E-05 8.1E-10 74.2 9.4 26 39-64 162-187 (287)
334 cd03115 SRP The signal recogni 97.9 6.8E-05 1.5E-09 66.7 10.2 80 139-229 82-161 (173)
335 KOG0074 GTP-binding ADP-ribosy 97.9 5.4E-05 1.2E-09 63.1 8.6 115 38-222 17-134 (185)
336 KOG0076 GTP-binding ADP-ribosy 97.9 1.4E-05 3E-10 69.0 5.1 112 139-263 68-186 (197)
337 cd03114 ArgK-like The function 97.9 4.4E-05 9.6E-10 66.1 8.3 21 41-61 2-22 (148)
338 KOG0071 GTP-binding ADP-ribosy 97.9 7.9E-05 1.7E-09 62.1 9.1 132 38-242 17-154 (180)
339 PRK10867 signal recognition pa 97.9 0.00017 3.8E-09 73.0 13.5 81 139-230 183-263 (433)
340 COG5192 BMS1 GTP-binding prote 97.9 4.8E-05 1E-09 76.7 8.9 112 37-224 67-180 (1077)
341 PRK00771 signal recognition pa 97.9 0.00013 2.9E-09 74.0 12.4 79 141-230 177-255 (437)
342 PRK14845 translation initiatio 97.9 0.00012 2.6E-09 81.2 12.4 68 139-221 525-592 (1049)
343 KOG0468 U5 snRNP-specific prot 97.8 6E-05 1.3E-09 77.4 8.9 133 38-220 128-262 (971)
344 PRK12727 flagellar biosynthesi 97.8 4.7E-05 1E-09 78.0 8.1 81 139-231 428-508 (559)
345 KOG0081 GTPase Rab27, small G 97.8 4.3E-06 9.2E-11 70.8 0.2 102 140-254 67-171 (219)
346 COG1162 Predicted GTPases [Gen 97.8 5.2E-05 1.1E-09 72.2 7.2 22 40-61 166-187 (301)
347 KOG0097 GTPase Rab14, small G 97.8 9.1E-05 2E-09 61.5 7.7 123 35-223 8-132 (215)
348 PRK12723 flagellar biosynthesi 97.8 0.00033 7.2E-09 70.1 13.2 83 139-231 254-336 (388)
349 COG4108 PrfC Peptide chain rel 97.8 0.00013 2.9E-09 71.9 9.3 137 37-222 11-148 (528)
350 TIGR00959 ffh signal recogniti 97.8 0.00028 6E-09 71.5 12.0 81 139-230 182-262 (428)
351 KOG0077 Vesicle coat complex C 97.7 0.00014 3.1E-09 62.4 7.8 118 36-224 18-138 (193)
352 TIGR03348 VI_IcmF type VI secr 97.7 0.00023 5E-09 81.4 11.2 57 6-67 82-138 (1169)
353 COG3640 CooC CO dehydrogenase 97.7 0.0009 1.9E-08 61.2 12.6 86 140-249 134-221 (255)
354 COG1419 FlhF Flagellar GTP-bin 97.7 0.00087 1.9E-08 66.3 13.5 155 38-231 203-362 (407)
355 KOG0072 GTP-binding ADP-ribosy 97.7 9.2E-05 2E-09 62.0 5.6 72 138-222 60-134 (182)
356 COG0481 LepA Membrane GTPase L 97.6 0.00011 2.4E-09 73.1 7.0 133 37-221 8-142 (603)
357 TIGR00101 ureG urease accessor 97.6 0.00046 9.9E-09 62.9 10.5 23 39-61 2-24 (199)
358 TIGR00073 hypB hydrogenase acc 97.6 0.00019 4.2E-09 65.8 7.4 25 37-61 21-45 (207)
359 KOG0458 Elongation factor 1 al 97.6 0.00022 4.8E-09 72.7 8.1 75 135-224 250-332 (603)
360 KOG1144 Translation initiation 97.6 0.00041 8.9E-09 72.3 9.8 130 37-220 474-605 (1064)
361 KOG2485 Conserved ATP/GTP bind 97.5 0.00011 2.4E-09 69.6 5.0 26 37-62 142-167 (335)
362 COG2895 CysN GTPases - Sulfate 97.5 0.00071 1.5E-08 65.1 10.0 145 37-226 5-158 (431)
363 COG3276 SelB Selenocysteine-sp 97.5 0.00044 9.4E-09 68.6 8.5 108 140-263 50-161 (447)
364 KOG0088 GTPase Rab21, small G 97.5 0.00024 5.3E-09 60.3 5.8 119 38-223 13-134 (218)
365 COG0541 Ffh Signal recognition 97.4 0.0049 1.1E-07 61.4 15.3 79 139-229 182-261 (451)
366 PRK06995 flhF flagellar biosyn 97.4 0.00035 7.5E-09 71.6 7.1 81 140-231 335-415 (484)
367 KOG0467 Translation elongation 97.4 0.00039 8.5E-09 72.8 7.3 131 36-220 7-137 (887)
368 KOG1143 Predicted translation 97.3 0.0002 4.3E-09 69.1 3.8 145 40-224 169-320 (591)
369 KOG0461 Selenocysteine-specifi 97.3 0.0019 4.2E-08 61.9 10.2 67 140-225 70-140 (522)
370 COG1136 SalX ABC-type antimicr 97.3 0.00091 2E-08 61.6 7.4 50 168-218 152-203 (226)
371 PRK10463 hydrogenase nickel in 97.2 0.00017 3.8E-09 68.8 2.4 25 37-61 103-127 (290)
372 PF02492 cobW: CobW/HypB/UreG, 97.2 0.0015 3.3E-08 58.4 8.2 73 139-223 84-157 (178)
373 KOG1487 GTP-binding protein DR 97.2 0.00063 1.4E-08 62.7 5.2 32 36-68 57-88 (358)
374 COG5257 GCD11 Translation init 97.2 0.001 2.2E-08 63.3 6.7 41 40-82 12-52 (415)
375 KOG2484 GTPase [General functi 97.1 0.00081 1.8E-08 65.7 6.1 30 38-67 252-281 (435)
376 KOG0393 Ras-related small GTPa 97.1 0.00032 7E-09 62.9 2.7 117 39-222 5-124 (198)
377 PRK11537 putative GTP-binding 97.1 0.0018 3.9E-08 63.4 8.1 25 37-61 3-27 (318)
378 KOG4181 Uncharacterized conser 97.1 0.0068 1.5E-07 58.3 11.2 27 36-62 186-212 (491)
379 KOG3859 Septins (P-loop GTPase 97.0 0.0017 3.6E-08 60.6 6.8 134 39-223 43-192 (406)
380 KOG0780 Signal recognition par 97.0 0.00068 1.5E-08 66.0 4.2 81 138-229 182-262 (483)
381 KOG1534 Putative transcription 96.9 0.0024 5.1E-08 57.3 6.6 20 41-60 6-25 (273)
382 PF05879 RHD3: Root hair defec 96.9 0.0019 4.1E-08 70.2 6.6 22 44-66 1-22 (742)
383 PRK01889 GTPase RsgA; Reviewed 96.8 0.0016 3.5E-08 64.8 5.4 25 39-63 196-220 (356)
384 KOG2203 GTP-binding protein [G 96.8 0.0022 4.7E-08 65.0 6.0 27 37-63 36-62 (772)
385 COG1116 TauB ABC-type nitrate/ 96.8 0.0059 1.3E-07 56.6 8.3 27 40-67 31-57 (248)
386 KOG0460 Mitochondrial translat 96.8 0.0043 9.4E-08 59.5 7.5 134 36-223 50-186 (449)
387 COG5258 GTPBP1 GTPase [General 96.8 0.0018 3.9E-08 63.0 4.9 70 141-223 202-271 (527)
388 KOG1533 Predicted GTPase [Gene 96.6 0.0053 1.2E-07 56.0 6.4 20 41-60 5-24 (290)
389 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.024 5.3E-07 48.7 10.1 23 40-62 28-50 (144)
390 COG3840 ThiQ ABC-type thiamine 96.4 0.0029 6.2E-08 55.8 3.4 29 39-68 26-54 (231)
391 KOG2423 Nucleolar GTPase [Gene 96.3 0.0065 1.4E-07 59.4 5.7 24 40-63 309-332 (572)
392 KOG2749 mRNA cleavage and poly 96.3 0.11 2.4E-06 50.5 13.6 44 36-85 101-144 (415)
393 KOG3905 Dynein light intermedi 96.3 0.062 1.3E-06 51.5 11.6 61 206-268 221-290 (473)
394 PF13555 AAA_29: P-loop contai 96.3 0.0047 1E-07 44.7 3.2 22 39-60 24-45 (62)
395 KOG0464 Elongation factor G [T 96.2 0.0011 2.3E-08 64.9 -0.7 137 34-222 33-169 (753)
396 PRK13695 putative NTPase; Prov 96.2 0.025 5.4E-07 50.2 8.2 22 40-61 2-23 (174)
397 KOG0463 GTP-binding protein GP 96.1 0.0065 1.4E-07 58.9 4.5 23 40-62 135-157 (641)
398 cd00071 GMPK Guanosine monopho 96.1 0.0051 1.1E-07 52.4 3.5 21 41-61 2-22 (137)
399 cd02038 FleN-like FleN is a me 96.1 0.038 8.2E-07 47.2 8.7 66 140-221 45-111 (139)
400 cd03111 CpaE_like This protein 96.1 0.056 1.2E-06 43.8 9.2 61 141-216 44-106 (106)
401 PF06858 NOG1: Nucleolar GTP-b 96.1 0.014 3.1E-07 41.2 4.7 52 167-218 3-58 (58)
402 PF13521 AAA_28: AAA domain; P 96.0 0.004 8.7E-08 54.6 2.4 22 40-61 1-22 (163)
403 TIGR02475 CobW cobalamin biosy 96.0 0.037 8.1E-07 54.7 9.3 25 37-61 3-27 (341)
404 TIGR02868 CydC thiol reductant 96.0 0.07 1.5E-06 56.2 11.9 23 40-62 363-385 (529)
405 PF00005 ABC_tran: ABC transpo 96.0 0.0054 1.2E-07 51.9 2.8 23 40-62 13-35 (137)
406 COG1101 PhnK ABC-type uncharac 95.9 0.0069 1.5E-07 54.8 3.3 28 39-67 33-60 (263)
407 cd01859 MJ1464 MJ1464. This f 95.9 0.015 3.3E-07 50.4 5.4 54 167-222 3-56 (156)
408 COG1135 AbcC ABC-type metal io 95.9 0.0099 2.1E-07 56.7 4.3 47 168-216 151-200 (339)
409 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0068 1.5E-07 54.3 3.1 26 37-62 2-30 (188)
410 PRK11174 cysteine/glutathione 95.8 0.091 2E-06 56.1 12.2 25 40-66 378-402 (588)
411 TIGR03263 guanyl_kin guanylate 95.8 0.0093 2E-07 53.1 3.8 22 40-61 3-24 (180)
412 cd01130 VirB11-like_ATPase Typ 95.8 0.0078 1.7E-07 54.2 3.3 22 40-61 27-48 (186)
413 COG0523 Putative GTPases (G3E 95.7 0.11 2.5E-06 50.7 11.3 25 38-62 1-25 (323)
414 PF03205 MobB: Molybdopterin g 95.7 0.0079 1.7E-07 51.5 2.8 23 39-61 1-23 (140)
415 COG0488 Uup ATPase components 95.7 0.068 1.5E-06 55.9 10.1 35 39-75 30-64 (530)
416 cd01855 YqeH YqeH. YqeH is an 95.6 0.047 1E-06 49.1 7.8 54 166-223 24-77 (190)
417 PRK00300 gmk guanylate kinase; 95.6 0.011 2.3E-07 53.9 3.4 36 40-75 7-43 (205)
418 PLN03232 ABC transporter C fam 95.6 0.14 3.1E-06 60.5 13.5 23 40-62 645-667 (1495)
419 COG0194 Gmk Guanylate kinase [ 95.6 0.01 2.2E-07 52.6 3.0 36 40-75 6-41 (191)
420 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.15 3.2E-06 39.5 9.4 21 41-61 2-22 (99)
421 cd02019 NK Nucleoside/nucleoti 95.5 0.013 2.9E-07 43.4 3.0 21 41-61 2-22 (69)
422 KOG0465 Mitochondrial elongati 95.5 0.012 2.7E-07 60.5 3.6 71 137-222 101-171 (721)
423 TIGR03796 NHPM_micro_ABC1 NHPM 95.5 0.22 4.7E-06 54.5 13.6 23 40-62 507-529 (710)
424 cd03225 ABC_cobalt_CbiO_domain 95.4 0.014 3.1E-07 53.4 3.7 23 40-62 29-51 (211)
425 cd03261 ABC_Org_Solvent_Resist 95.4 0.014 3E-07 54.5 3.7 23 40-62 28-50 (235)
426 COG3523 IcmF Type VI protein s 95.4 0.072 1.6E-06 60.1 9.7 82 141-223 175-272 (1188)
427 PF13207 AAA_17: AAA domain; P 95.4 0.012 2.6E-07 48.6 2.8 22 40-61 1-22 (121)
428 PRK14737 gmk guanylate kinase; 95.4 0.016 3.5E-07 52.1 3.9 38 38-75 4-42 (186)
429 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.015 3.2E-07 53.6 3.6 23 40-62 32-54 (218)
430 COG0552 FtsY Signal recognitio 95.4 0.082 1.8E-06 51.2 8.7 82 139-229 221-306 (340)
431 COG4107 PhnK ABC-type phosphon 95.4 0.014 3E-07 51.0 3.2 30 40-71 34-63 (258)
432 cd03280 ABC_MutS2 MutS2 homolo 95.4 0.23 5E-06 45.1 11.4 20 40-59 30-49 (200)
433 TIGR03499 FlhF flagellar biosy 95.3 0.0099 2.1E-07 57.3 2.4 23 39-61 195-217 (282)
434 cd03264 ABC_drug_resistance_li 95.3 0.015 3.2E-07 53.3 3.5 22 40-61 27-48 (211)
435 cd03243 ABC_MutS_homologs The 95.3 0.32 7E-06 44.2 12.2 22 40-61 31-52 (202)
436 TIGR02673 FtsE cell division A 95.3 0.016 3.6E-07 53.1 3.6 23 40-62 30-52 (214)
437 cd03265 ABC_DrrA DrrA is the A 95.3 0.017 3.7E-07 53.3 3.7 22 40-61 28-49 (220)
438 KOG3886 GTP-binding protein [S 95.3 0.023 5E-07 51.8 4.3 77 140-225 53-134 (295)
439 TIGR02788 VirB11 P-type DNA tr 95.3 0.036 7.8E-07 54.1 6.1 30 39-70 145-174 (308)
440 cd03224 ABC_TM1139_LivF_branch 95.3 0.017 3.8E-07 53.3 3.7 23 40-62 28-50 (222)
441 PRK13541 cytochrome c biogenes 95.2 0.018 3.9E-07 52.1 3.7 23 40-62 28-50 (195)
442 cd03218 ABC_YhbG The ABC trans 95.2 0.018 3.9E-07 53.6 3.7 23 40-62 28-50 (232)
443 PRK13851 type IV secretion sys 95.2 0.015 3.4E-07 57.3 3.4 34 37-72 161-194 (344)
444 cd03226 ABC_cobalt_CbiO_domain 95.2 0.018 4E-07 52.5 3.7 23 40-62 28-50 (205)
445 COG4559 ABC-type hemin transpo 95.2 0.019 4E-07 52.0 3.5 27 40-67 29-55 (259)
446 cd03215 ABC_Carb_Monos_II This 95.2 0.019 4.1E-07 51.4 3.7 24 39-62 27-50 (182)
447 cd01858 NGP_1 NGP-1. Autoanti 95.2 0.045 9.8E-07 47.6 6.0 52 170-223 2-55 (157)
448 cd03222 ABC_RNaseL_inhibitor T 95.2 0.016 3.4E-07 51.7 3.1 25 38-62 25-49 (177)
449 cd02042 ParA ParA and ParB of 95.2 0.3 6.5E-06 39.0 10.4 33 140-187 40-72 (104)
450 cd03259 ABC_Carb_Solutes_like 95.2 0.019 4.1E-07 52.7 3.7 23 40-62 28-50 (213)
451 cd03229 ABC_Class3 This class 95.2 0.021 4.5E-07 50.9 3.7 23 40-62 28-50 (178)
452 cd03258 ABC_MetN_methionine_tr 95.1 0.02 4.4E-07 53.3 3.8 23 40-62 33-55 (233)
453 PRK09270 nucleoside triphospha 95.1 0.025 5.3E-07 52.7 4.3 41 7-61 16-56 (229)
454 COG0410 LivF ABC-type branched 95.1 0.02 4.3E-07 52.5 3.5 22 40-61 31-52 (237)
455 PRK11629 lolD lipoprotein tran 95.1 0.019 4E-07 53.6 3.5 23 40-62 37-59 (233)
456 PF09547 Spore_IV_A: Stage IV 95.1 0.16 3.5E-06 50.8 10.0 153 40-221 19-194 (492)
457 PF13671 AAA_33: AAA domain; P 95.1 0.015 3.3E-07 49.4 2.6 21 41-61 2-22 (143)
458 cd03262 ABC_HisP_GlnQ_permease 95.1 0.021 4.5E-07 52.4 3.8 23 40-62 28-50 (213)
459 TIGR01166 cbiO cobalt transpor 95.1 0.018 3.9E-07 51.9 3.2 23 40-62 20-42 (190)
460 cd03254 ABCC_Glucan_exporter_l 95.1 0.021 4.5E-07 53.0 3.7 23 40-62 31-53 (229)
461 COG1120 FepC ABC-type cobalami 95.1 0.021 4.5E-07 53.8 3.6 22 40-61 30-51 (258)
462 cd01129 PulE-GspE PulE/GspE Th 95.1 0.1 2.2E-06 49.7 8.4 22 40-61 82-103 (264)
463 PLN03130 ABC transporter C fam 95.1 0.21 4.5E-06 59.5 12.6 23 40-62 645-667 (1622)
464 PRK13543 cytochrome c biogenes 95.1 0.021 4.6E-07 52.5 3.6 23 40-62 39-61 (214)
465 cd03231 ABC_CcmA_heme_exporter 95.1 0.023 5E-07 51.7 3.8 24 39-62 27-50 (201)
466 cd03266 ABC_NatA_sodium_export 95.0 0.022 4.8E-07 52.4 3.7 23 40-62 33-55 (218)
467 cd03219 ABC_Mj1267_LivG_branch 95.0 0.021 4.6E-07 53.2 3.6 22 40-61 28-49 (236)
468 TIGR03797 NHPM_micro_ABC2 NHPM 95.0 0.27 5.8E-06 53.6 12.6 23 40-62 481-503 (686)
469 cd03369 ABCC_NFT1 Domain 2 of 95.0 0.023 4.9E-07 52.0 3.6 23 40-62 36-58 (207)
470 TIGR00157 ribosome small subun 95.0 0.023 5E-07 53.5 3.8 57 167-223 27-83 (245)
471 TIGR01193 bacteriocin_ABC ABC- 95.0 0.32 7E-06 53.2 13.2 23 40-62 502-524 (708)
472 TIGR00960 3a0501s02 Type II (G 95.0 0.02 4.3E-07 52.7 3.3 24 39-62 30-53 (216)
473 PRK15177 Vi polysaccharide exp 95.0 0.022 4.9E-07 52.4 3.6 23 40-62 15-37 (213)
474 cd03268 ABC_BcrA_bacitracin_re 95.0 0.022 4.7E-07 52.1 3.5 23 40-62 28-50 (208)
475 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.025 5.4E-07 49.2 3.7 32 39-72 26-57 (157)
476 PRK13651 cobalt transporter AT 95.0 0.023 4.9E-07 55.4 3.7 23 40-62 35-57 (305)
477 PRK08118 topology modulation p 95.0 0.022 4.7E-07 50.3 3.2 23 39-61 2-24 (167)
478 PRK10751 molybdopterin-guanine 95.0 0.019 4.1E-07 50.9 2.8 25 37-61 5-29 (173)
479 cd03269 ABC_putative_ATPase Th 94.9 0.021 4.6E-07 52.2 3.3 23 40-62 28-50 (210)
480 cd03263 ABC_subfamily_A The AB 94.9 0.02 4.3E-07 52.8 3.1 23 40-62 30-52 (220)
481 cd03256 ABC_PhnC_transporter A 94.9 0.023 4.9E-07 53.2 3.5 23 40-62 29-51 (241)
482 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.023 5E-07 53.1 3.6 23 40-62 31-53 (238)
483 cd03257 ABC_NikE_OppD_transpor 94.9 0.025 5.4E-07 52.4 3.7 23 40-62 33-55 (228)
484 PHA02518 ParA-like protein; Pr 94.9 0.53 1.1E-05 42.7 12.6 66 139-219 76-145 (211)
485 PRK12289 GTPase RsgA; Reviewed 94.9 0.031 6.8E-07 55.4 4.6 55 168-222 81-135 (352)
486 smart00010 small_GTPase Small 94.9 0.1 2.2E-06 42.7 7.1 24 40-63 2-25 (124)
487 TIGR03608 L_ocin_972_ABC putat 94.9 0.023 4.9E-07 51.8 3.4 23 40-62 26-48 (206)
488 TIGR02322 phosphon_PhnN phosph 94.9 0.019 4.1E-07 51.1 2.7 22 40-61 3-24 (179)
489 cd03253 ABCC_ATM1_transporter 94.9 0.025 5.3E-07 52.8 3.6 23 40-62 29-51 (236)
490 cd03216 ABC_Carb_Monos_I This 94.9 0.025 5.3E-07 49.7 3.4 24 39-62 27-50 (163)
491 cd03301 ABC_MalK_N The N-termi 94.9 0.026 5.6E-07 51.8 3.7 23 40-62 28-50 (213)
492 PRK10078 ribose 1,5-bisphospho 94.9 0.021 4.6E-07 51.3 3.1 23 40-62 4-26 (186)
493 cd03232 ABC_PDR_domain2 The pl 94.9 0.028 6.1E-07 50.8 3.9 23 40-62 35-57 (192)
494 PRK14250 phosphate ABC transpo 94.9 0.026 5.6E-07 53.0 3.8 22 40-61 31-52 (241)
495 PRK10908 cell division protein 94.9 0.026 5.6E-07 52.2 3.7 24 39-62 29-52 (222)
496 PRK10895 lipopolysaccharide AB 94.9 0.026 5.6E-07 52.9 3.7 23 40-62 31-53 (241)
497 PRK11248 tauB taurine transpor 94.9 0.026 5.7E-07 53.5 3.8 23 40-62 29-51 (255)
498 PRK13900 type IV secretion sys 94.9 0.02 4.4E-07 56.3 3.1 31 39-71 161-191 (332)
499 PRK13539 cytochrome c biogenes 94.9 0.027 5.9E-07 51.5 3.8 23 40-62 30-52 (207)
500 COG1126 GlnQ ABC-type polar am 94.9 0.031 6.7E-07 50.8 3.9 25 39-63 29-53 (240)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=7.8e-73 Score=588.13 Aligned_cols=427 Identities=48% Similarity=0.701 Sum_probs=400.9
Q ss_pred CchhhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEE
Q 013508 1 MTTMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQL 80 (441)
Q Consensus 1 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l 80 (441)
|..|+.+++.+|++|+++..++.... ..+|+|+|||.||+||||++|+++|++|+|||.|+|||+|.+++|
T Consensus 1 ~~~~~~li~~vn~lqd~~~~l~~~~~---------i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL 71 (657)
T KOG0446|consen 1 RGLMRLLIPLSNPLQDKLEILGSSSF---------IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQL 71 (657)
T ss_pred CchhhhccccchHHHHHHHHhcCCCc---------ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeec
Confidence 56899999999999999999994443 699999999999999999999999999999999999999999999
Q ss_pred EecCCCcchhHHhh-cCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCC
Q 013508 81 HKTEDGSQEYAEFL-HLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (441)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~ 159 (441)
.+......+|++|. |.+...++||.+++++|..+++++.|.++++|+.+|.+++++|+++++|+||+||+.+++.++||
T Consensus 72 ~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp 151 (657)
T KOG0446|consen 72 SIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQP 151 (657)
T ss_pred ccccCCcccchhccccccccccCCHHHHHHHHHhhHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCC
Confidence 99988889999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCC
Q 013508 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (441)
Q Consensus 160 ~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~ 239 (441)
+++..++++|++.|+..+++||++|.+||.|+++++++++++++||.|.|||+|+||+|++++|++..+++.|..+++++
T Consensus 152 ~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~ 231 (657)
T KOG0446|consen 152 DDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKV 231 (657)
T ss_pred ccHHHHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013508 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (441)
Q Consensus 240 g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~ 319 (441)
||++|+||++++++...+...+...|..||.+++.|+.+..++|+++|.+.|...|..||++.+|.+...++..+.+.++
T Consensus 232 g~v~vvnR~q~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~l~~~i~~~~~~~~~ 311 (657)
T KOG0446|consen 232 GYVGVVNRSQSIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPELKTKINKLLEKYQD 311 (657)
T ss_pred ceeeeeccchhhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHhHHhhhHHHHhccCCccccCchHhHH
Q 013508 320 EMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVK 391 (441)
Q Consensus 320 ~l~~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~ 391 (441)
++.++|. ..+..+....++.+...|+..+...+.|.. .||+|+++.|++.|...+.++++.+.+...+|+
T Consensus 312 el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~~i~~~~~~~~~~i~ 389 (657)
T KOG0446|consen 312 ELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIKKLPPDRKLLGQNIE 389 (657)
T ss_pred HHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhhcCCcchhhhHHHHH
Confidence 9999995 222222333455666666666666666652 589999999999999999999999999999999
Q ss_pred HHHHhhcCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHhhhc
Q 013508 392 KVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVSFPSF 438 (441)
Q Consensus 392 ~~i~n~~g~~~~~~~p~~~f~~li~~~i~~~~~P~~~c~~~v~~~l~ 438 (441)
+++.|++|++|++|+|+.+|+.+|++||+.+++||++||+.|+++|.
T Consensus 390 ~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~~el~ 436 (657)
T KOG0446|consen 390 KLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVHRELV 436 (657)
T ss_pred HHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999985
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=3.5e-47 Score=352.35 Aligned_cols=239 Identities=62% Similarity=0.972 Sum_probs=221.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec
Q 013508 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (441)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (441)
|+.|++++|+++++++.+|.... .++|+|+|||++|+||||++|+|+|..++|++.|.|||+|+++++++.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~---------i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~ 71 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINS 71 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCC
Confidence 78999999999999988986543 689999999999999999999999999899999999999999999875
Q ss_pred CCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHH
Q 013508 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (441)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~ 163 (441)
. .+|+++.+..++.+.+++++.+.|++.++.+.+.+++||+++|++++++|+.++++||||||+...+.++++.++.
T Consensus 72 ~---~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~ 148 (240)
T smart00053 72 S---TEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIE 148 (240)
T ss_pred C---CcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHH
Confidence 3 5677888888888999999999999999999988999999999999999999999999999998776666677788
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEE
Q 013508 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (441)
Q Consensus 164 ~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 243 (441)
..+++++..|++++++|||+|++++.|+.+++++++++.+++.+.|+++|+||+|..++++++.++++|+.+++++||++
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~~~~l~~g~~~ 228 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENKLLPLRRGYIG 228 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCCccccCCCEEE
Confidence 89999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEeCChhhhcc
Q 013508 244 IVNRSQADINR 254 (441)
Q Consensus 244 v~~~s~~~~~~ 254 (441)
|+|||+++++.
T Consensus 229 v~nr~~~d~~~ 239 (240)
T smart00053 229 VVNRSQKDIEG 239 (240)
T ss_pred EECCChHHhhc
Confidence 99999988653
No 3
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=9.8e-37 Score=295.18 Aligned_cols=212 Identities=31% Similarity=0.473 Sum_probs=190.7
Q ss_pred HHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHH
Q 013508 227 LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSI 306 (441)
Q Consensus 227 ~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~ 306 (441)
.+++.|+.+++++||++|+|||++++....++.+++..|..||.++|+|+..++++|+++|+.+|+++|.+||+++||.+
T Consensus 2 ~~iL~n~~~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l 81 (295)
T PF01031_consen 2 MDILRNKVIPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSL 81 (295)
T ss_dssp HHHHTTSSS--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhCCCeeccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHH
Confidence 58899999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCC---------CCchhHhHHhhhHHHHhc
Q 013508 307 TSLINKSIEELESEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRP---------GGDRIYGVFDNQLPAALR 377 (441)
Q Consensus 307 ~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~---------gg~~i~~~f~~~~~~~~~ 377 (441)
+.+|...+.+++.+|..||+++..+.++++.++++++.+|++.+.++++|.+. ||+++.++|++.+...+.
T Consensus 82 ~~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~ 161 (295)
T PF01031_consen 82 KSEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLE 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999988777889999999999999999999999986 478999999999999998
Q ss_pred cCCccccCchHhHHHHHHhhcCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHhhhc
Q 013508 378 KLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVSFPSF 438 (441)
Q Consensus 378 ~~~~~~~~~~~~i~~~i~n~~g~~~~~~~p~~~f~~li~~~i~~~~~P~~~c~~~v~~~l~ 438 (441)
+.+....+++++|+++++|++|+++++|+|+.+|+.||+++|++|++||++||+.|+++|.
T Consensus 162 ~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~l~ 222 (295)
T PF01031_consen 162 KIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEELQ 222 (295)
T ss_dssp HTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8888778899999999999999999999999999999999999999999999999999874
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=100.00 E-value=7.1e-32 Score=263.21 Aligned_cols=268 Identities=29% Similarity=0.473 Sum_probs=220.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCC----ccccChHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPK----RRFTDFSMVRKE 110 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~ 110 (441)
..||+|||||+|||||+|+|+.+....+||||+| ..||.|..+.|+..|. ..+.|....+ .+.+|+.+++++
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPy---HVAqFrDSsREfDLTKE~DLq~LR~e 382 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPH---HVALFKDSSREFDLTKEEDLAALRHE 382 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcc---hhhhhccccccccccchhHHHHHHHH
Confidence 4799999999999999999999999999999998 7899999999876643 3344433332 345689999999
Q ss_pred HHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc
Q 013508 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (441)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~ 190 (441)
++-++......++.+|+.+|.+.+.||+.+.+++||+||+++..+.+...+..+.+-.|.+.||.+|++|||++.+++.|
T Consensus 383 ~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVD 462 (980)
T KOG0447|consen 383 IELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVD 462 (980)
T ss_pred HHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcc
Confidence 99888877777899999999999999999999999999999988878778888888999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc----CcHHHHHcCcccccC-CCeEEEEeCChhhhccCCcHHHHHHHH
Q 013508 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG----TNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKE 265 (441)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~----~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e 265 (441)
...+-.-.+..++||.|.|||+|+||+|+.++. ..+.++++|+.++++ +|||+|+.-.+ +..-++..-+..|
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVTGrG---nssdSIdaIR~YE 539 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVTGKG---NSSESIEAIREYE 539 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEecCC---CcchhHHHHHHHH
Confidence 888888889999999999999999999998652 246789999988885 79999985322 2223445567788
Q ss_pred HhHhccCCCCcc---cccccchHHHHHHHHHHHHHHHHhhhHHHHHH
Q 013508 266 REYFATSPDYGH---LAGKMGSEYLAKLLSKHLESVIRSRIPSITSL 309 (441)
Q Consensus 266 ~~ff~~~~~~~~---~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~ 309 (441)
++||.++..++. .+.++.+.+|.=.++..++..+++.+......
T Consensus 540 E~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVResiEqQaDa 586 (980)
T KOG0447|consen 540 EEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRESVEQQADS 586 (980)
T ss_pred HHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876544 24667777888778888887777777554443
No 5
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.2e-27 Score=222.00 Aligned_cols=237 Identities=20% Similarity=0.340 Sum_probs=180.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|++||.||+|||||+|+|+|.++ .++|+.|.+ ++.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki-----sIvS~k~QT------------------------------------TR~ 43 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI-----SIVSPKPQT------------------------------------TRN 43 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce-----EeecCCcch------------------------------------hhh
Confidence 345799999999999999999999999 999999842 455
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
++.| |...+..+++||||||+... ...+.+.+.+.+++.+...|.++++| ++...+...+.
T Consensus 44 ~I~G-------------I~t~~~~QiIfvDTPGih~p-----k~~l~~~m~~~a~~sl~dvDlilfvv-d~~~~~~~~d~ 104 (298)
T COG1159 44 RIRG-------------IVTTDNAQIIFVDTPGIHKP-----KHALGELMNKAARSALKDVDLILFVV-DADEGWGPGDE 104 (298)
T ss_pred heeE-------------EEEcCCceEEEEeCCCCCCc-----chHHHHHHHHHHHHHhccCcEEEEEE-eccccCCccHH
Confidence 6666 77777889999999999985 24566677788888999999666655 55555544343
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChh---hhccCCcHHHHHHHHHhHhccCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA---DINRNIDMIVARRKEREYFATSP 273 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~e~~ff~~~~ 273 (441)
. ++..+.....|.|+++||+|...+...+..+.. ......+|..+++.|+. +++.+.+.+.....|.+|++...
T Consensus 105 ~-il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~--~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 105 F-ILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIA--FLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred H-HHHHHhhcCCCeEEEEEccccCCcHHHHHHHHH--HHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChh
Confidence 3 445555556899999999999988764333332 23444566677777774 44456666777888899999888
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHH
Q 013508 274 DYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 339 (441)
Q Consensus 274 ~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l 339 (441)
.+++.+.++ ...+.++|.++...+++||+.......+++..+..+..+...+.+++++|+.++
T Consensus 182 ~itD~~~rf---~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I~Ver~sQK~Ii 244 (298)
T COG1159 182 QITDRPERF---LAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATIYVERESQKGII 244 (298)
T ss_pred hccCChHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEEEEecCCccceE
Confidence 888888777 678999999999999999998887666666666677777777778888777654
No 6
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.89 E-value=1.5e-22 Score=179.89 Aligned_cols=167 Identities=35% Similarity=0.500 Sum_probs=130.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcch-hHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE-YAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
|+|+|.+|||||||+|+|+|.+++|++.+.||++|+.+++.+.+..... +..........+.++.++...+........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7999999999999999999999999999999999999999887653311 111111124566788999999888887777
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
+....++...+.+....+...+++||||||+.+..... .+++.+|+.+.|. +++|.+++..+...+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---------~~~~~~~~~~~d~-vi~V~~~~~~~~~~~~~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---------TEITEEYLPKADV-VIFVVDANQDLTESDMEFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---------SHHHHHHHSTTEE-EEEEEETTSTGGGHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh---------HHHHHHhhccCCE-EEEEeccCcccchHHHHHH
Confidence 66677888888888999999999999999997743211 2789999976765 4555577777877888888
Q ss_pred HHHhCCCCCcEEEEeccC
Q 013508 200 AREVDPTGERTFGVLTKL 217 (441)
Q Consensus 200 ~~~~~~~~~r~i~VltK~ 217 (441)
.+..++...++|+|+||+
T Consensus 151 ~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTTCSSEEEEEE-G
T ss_pred HHHhcCCCCeEEEEEcCC
Confidence 889999999999999995
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=5.3e-21 Score=183.09 Aligned_cols=234 Identities=15% Similarity=0.176 Sum_probs=147.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
.|+++|.+|||||||+|+|+|.++ ..++..|.. +...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-----~~vs~~~~T------------------------------------Tr~~i~ 40 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-----SITSPKAQT------------------------------------TRNRIS 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-----eecCCCCCc------------------------------------ccCcEE
Confidence 699999999999999999999986 344443310 000001
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
| +...+..+++|+||||+.... ......+.+.+..++..+|.+++++++.. .. ..+ ..+
T Consensus 41 ~-------------i~~~~~~qii~vDTPG~~~~~-----~~l~~~~~~~~~~~l~~aDvvl~VvD~~~-~~-~~~-~~i 99 (270)
T TIGR00436 41 G-------------IHTTGASQIIFIDTPGFHEKK-----HSLNRLMMKEARSAIGGVDLILFVVDSDQ-WN-GDG-EFV 99 (270)
T ss_pred E-------------EEEcCCcEEEEEECcCCCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCC-CC-chH-HHH
Confidence 1 333334579999999997641 22344444567788899998888776543 22 221 234
Q ss_pred HHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccC-CCeEEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCccc
Q 013508 200 AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHL 278 (441)
Q Consensus 200 ~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~ 278 (441)
+..+...+.|+++|+||+|+..+.. ..+.+........ ..++.+++..+.+++...+.+.....+.+|++.....++.
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~ 178 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQ 178 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC
Confidence 4445556789999999999975432 2222111000111 1456666666666766666666666667776666556655
Q ss_pred ccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHH
Q 013508 279 AGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 339 (441)
Q Consensus 279 ~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l 339 (441)
+.++ ...+.++|.++.++++++||........++..+...-.+...+.+.+++|+.++
T Consensus 179 ~~~~---~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~~~s~k~ii 236 (270)
T TIGR00436 179 PDRF---KISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVERESQKKII 236 (270)
T ss_pred CHHH---HHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEECcCCceeEE
Confidence 5554 778999999999999999998887666665433222234455556666666554
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=7.2e-20 Score=177.44 Aligned_cols=234 Identities=19% Similarity=0.295 Sum_probs=143.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
...|+|+|.+|||||||+|+|+|.++ ..++..|.. +...
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~-----~~vs~~~~t------------------------------------t~~~ 43 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPKPQT------------------------------------TRHR 43 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce-----eecCCCCCc------------------------------------cccc
Confidence 45799999999999999999999987 444444411 0000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
..+ +...+..+++|+||||+.... ....+.+...+..++..+|+++++++... .+ .....
T Consensus 44 i~~-------------i~~~~~~qi~~iDTPG~~~~~-----~~l~~~~~~~~~~~~~~~D~il~vvd~~~-~~-~~~~~ 103 (292)
T PRK00089 44 IRG-------------IVTEDDAQIIFVDTPGIHKPK-----RALNRAMNKAAWSSLKDVDLVLFVVDADE-KI-GPGDE 103 (292)
T ss_pred EEE-------------EEEcCCceEEEEECCCCCCch-----hHHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC-ChhHH
Confidence 111 333344689999999997642 22334445667778889998888775543 33 23334
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCC---eEEEEeCChhhhccCCcHHHHHHHHHhHhccCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP---WVGIVNRSQADINRNIDMIVARRKEREYFATSPD 274 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g---~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~ 274 (441)
.++..+...+.|+++|+||+|+..........+.. +....+ ++.+.+....++....+.+.....+.++++....
T Consensus 104 ~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~--l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~ 181 (292)
T PRK00089 104 FILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEE--LSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQ 181 (292)
T ss_pred HHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHH--HHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 45555555578999999999998443332222221 111123 3444444444555555555555555555555444
Q ss_pred CcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHH
Q 013508 275 YGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 339 (441)
Q Consensus 275 ~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l 339 (441)
.++.+.+. ...+.++|.++.++++++|+..+.....+++. ....+...+.+.+++|+.++
T Consensus 182 ~td~~~r~---~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i~v~~~~~k~i~ 241 (292)
T PRK00089 182 ITDRPERF---LAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATIYVERDSQKGII 241 (292)
T ss_pred CCCCCHHH---HHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEEEEccCCceeEE
Confidence 44444333 67899999999999999999887666655542 23334555556666665544
No 9
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=5e-19 Score=174.31 Aligned_cols=235 Identities=18% Similarity=0.246 Sum_probs=153.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
..|+++|.+|+|||||+|+|+|..+ .+++..|.
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~-----~ivs~k~~------------------------------------------ 85 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKL-----SIVTPKVQ------------------------------------------ 85 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCce-----eeccCCCC------------------------------------------
Confidence 4899999999999999999999886 33333331
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
.+.. .+. .+...+..++.||||||+.... ..+...+...+..++..+|++++++++ ...+...+ ..
T Consensus 86 --tTr~----~~~-~~~~~~~~qi~~~DTpG~~~~~-----~~l~~~~~r~~~~~l~~aDvil~VvD~-~~s~~~~~-~~ 151 (339)
T PRK15494 86 --TTRS----IIT-GIITLKDTQVILYDTPGIFEPK-----GSLEKAMVRCAWSSLHSADLVLLIIDS-LKSFDDIT-HN 151 (339)
T ss_pred --CccC----cEE-EEEEeCCeEEEEEECCCcCCCc-----ccHHHHHHHHHHHHhhhCCEEEEEEEC-CCCCCHHH-HH
Confidence 0000 000 1222234579999999996531 223333344555668889988887754 33332222 23
Q ss_pred HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCc-ccccCCCeEEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcc
Q 013508 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGH 277 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~ 277 (441)
++..+...+.+.|+|+||+|+.+. ...++.... .......++.+.+.++.+++..++.+...+.|.+|++....+++
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td 229 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITD 229 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 444444456788999999998643 222221100 01111246677777777888888888888899999998888888
Q ss_pred cccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHH
Q 013508 278 LAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTI 339 (441)
Q Consensus 278 ~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l 339 (441)
.+.++ ...+.++|.++.++.+++||........+++.+.....+...+.+.+++|+.++
T Consensus 230 ~~~~~---~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i~v~~~sqk~ii 288 (339)
T PRK15494 230 LPMRF---IAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVIVVSRESYKTII 288 (339)
T ss_pred CCHHH---HHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEEEECCCCceeEE
Confidence 77666 678999999999999999999887777776543233345556666667666554
No 10
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.78 E-value=4.7e-19 Score=163.73 Aligned_cols=223 Identities=15% Similarity=0.225 Sum_probs=145.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|||.||+|||||.|.++|.++.| +||++.. ++.
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~-----vS~K~~T------------------------------------Tr~ 109 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSA-----VSRKVHT------------------------------------TRH 109 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcccc-----ccccccc------------------------------------eee
Confidence 34589999999999999999999999944 4444421 222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~~~ 195 (441)
++.| +.+.+..+++|+||||+.......+.. +...+..-.+..+.++|+++++++.++. ......
T Consensus 110 ~ilg-------------i~ts~eTQlvf~DTPGlvs~~~~r~~~-l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~ 175 (379)
T KOG1423|consen 110 RILG-------------IITSGETQLVFYDTPGLVSKKMHRRHH-LMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR 175 (379)
T ss_pred eeeE-------------EEecCceEEEEecCCcccccchhhhHH-HHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH
Confidence 3334 667778899999999998754322111 1212223456778899998888876643 222445
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHH---HHHcCc--------------------ccccCCCe------EEEEe
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNAL---DVLEGR--------------------SYRLQHPW------VGIVN 246 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~---~~l~~~--------------------~~~l~~g~------~~v~~ 246 (441)
.+..++.+. ..|.|+|+||+|...+...+. +.+.+. .++-..|| |.|..
T Consensus 176 vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa 253 (379)
T KOG1423|consen 176 VLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA 253 (379)
T ss_pred HHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence 666777664 578999999999987654332 222111 11122345 44555
Q ss_pred CChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013508 247 RSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (441)
Q Consensus 247 ~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~ 319 (441)
.++.++++..+++...+..++|.+..... .+........+.+++.|++|+.+++||-.+.-...|++...
T Consensus 254 L~G~GikdlkqyLmsqa~~gpW~y~a~i~---T~~s~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e~~~ 323 (379)
T KOG1423|consen 254 LYGEGIKDLKQYLMSQAPPGPWKYPADIV---TEESPEFLCSESVREKLLDHLPQEVPYNLQVRILSWKERPA 323 (379)
T ss_pred ccccCHHHHHHHHHhcCCCCCCCCCcccc---cccCHHHHHHHHHHHHHHhhCccccCcceEEEEEEeeecCC
Confidence 55667777777776666656655543322 24445556779999999999999999977665555554333
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.76 E-value=4.7e-19 Score=153.43 Aligned_cols=119 Identities=26% Similarity=0.459 Sum_probs=79.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.||+|||||+|+|+|.+. . ++..|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~-~-----v~n~p-------------------------------------------- 31 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ-K-----VGNWP-------------------------------------------- 31 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE-E-----EEEST--------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-e-----ecCCC--------------------------------------------
Confidence 699999999999999999999984 1 22222
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCccccccHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iil~v~~a~~~~~~~~~l 197 (441)
|.+.. ... .........+.||||||+++.. +.+.. +.++++|+ .++|.+|+++++.+ .++.+
T Consensus 32 G~Tv~----~~~-g~~~~~~~~~~lvDlPG~ysl~----~~s~e---e~v~~~~l~~~~~D~ii~VvDa~~----l~r~l 95 (156)
T PF02421_consen 32 GTTVE----KKE-GIFKLGDQQVELVDLPGIYSLS----SKSEE---ERVARDYLLSEKPDLIIVVVDATN----LERNL 95 (156)
T ss_dssp TSSSE----EEE-EEEEETTEEEEEEE----SSSS----SSSHH---HHHHHHHHHHTSSSEEEEEEEGGG----HHHHH
T ss_pred CCCee----eee-EEEEecCceEEEEECCCcccCC----CCCcH---HHHHHHHHhhcCCCEEEEECCCCC----HHHHH
Confidence 11110 000 0122233689999999998864 23333 46677887 46887777776544 45677
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
.++.++...+.|+++|+||+|.+.+..
T Consensus 96 ~l~~ql~e~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 96 YLTLQLLELGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HHHHHHHHTTSSEEEEEETHHHHHHTT
T ss_pred HHHHHHHHcCCCEEEEEeCHHHHHHcC
Confidence 888888889999999999999986654
No 12
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=170.85 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=101.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|+||+|||||+|+|+|.+. .|.||...+.++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------------------------------------------~VgNwpGvTVEkk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------------------------------------------KVGNWPGVTVEKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------------------------------------------eecCCCCeeEEEE
Confidence 3599999999999999999999975 2222323344444
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCccccccHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQDIATSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iil~v~~a~~~~~~~~~ 196 (441)
.| ........+.+||+||+++... .+.. +..+++|+.+ +|.||.+|+++| -++.
T Consensus 42 eg-------------~~~~~~~~i~ivDLPG~YSL~~----~S~D---E~Var~~ll~~~~D~ivnVvDAtn----LeRn 97 (653)
T COG0370 42 EG-------------KLKYKGHEIEIVDLPGTYSLTA----YSED---EKVARDFLLEGKPDLIVNVVDATN----LERN 97 (653)
T ss_pred EE-------------EEEecCceEEEEeCCCcCCCCC----CCch---HHHHHHHHhcCCCCEEEEEcccch----HHHH
Confidence 44 2223345699999999999753 3333 5778999874 788888777766 6778
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 253 (441)
+.+.-++-+.|.|+|+++|++|...+....+|.-+ ....++.+..+++....++++
T Consensus 98 LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~-L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 98 LYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEK-LSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred HHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHH-HHHHhCCCEEEEEeecCCCHH
Confidence 88888888899999999999999876554333311 123344444455554444433
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=6.7e-17 Score=158.69 Aligned_cols=146 Identities=25% Similarity=0.353 Sum_probs=101.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
|.|++||.||+|||||+|+|+|.+. .++...|-+ ++++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~-----AIV~D~pGv------------------------------------TRDr~ 42 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI-----AIVSDTPGV------------------------------------TRDRI 42 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee-----eEeecCCCC------------------------------------ccCCc
Confidence 8999999999999999999999987 666555511 22222
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
.+ .... ....+.+|||+|+.... .+.+.+.+...+...+.++|+||++| ++..++ +.....
T Consensus 43 y~------------~~~~-~~~~f~lIDTgGl~~~~----~~~l~~~i~~Qa~~Ai~eADvilfvV-D~~~Gi-t~~D~~ 103 (444)
T COG1160 43 YG------------DAEW-LGREFILIDTGGLDDGD----EDELQELIREQALIAIEEADVILFVV-DGREGI-TPADEE 103 (444)
T ss_pred cc------------eeEE-cCceEEEEECCCCCcCC----chHHHHHHHHHHHHHHHhCCEEEEEE-eCCCCC-CHHHHH
Confidence 22 1111 23459999999998642 34578888999999999999887776 455555 445555
Q ss_pred HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhh
Q 013508 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQAD 251 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~ 251 (441)
+++.+.+.++|+|+|+||+|.........++ +.+ |+-..++.|+..
T Consensus 104 ia~~Lr~~~kpviLvvNK~D~~~~e~~~~ef-----ysl--G~g~~~~ISA~H 149 (444)
T COG1160 104 IAKILRRSKKPVILVVNKIDNLKAEELAYEF-----YSL--GFGEPVPISAEH 149 (444)
T ss_pred HHHHHHhcCCCEEEEEEcccCchhhhhHHHH-----Hhc--CCCCceEeehhh
Confidence 7888877789999999999987443322233 333 444455556543
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=149.63 Aligned_cols=175 Identities=22% Similarity=0.322 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCC
Q 013508 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED 85 (441)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~ 85 (441)
++..+..++.++........ +..+--.||++|.||+|||||||+|+|.+. .+||.-|
T Consensus 193 ~l~~~~~~l~~ll~~~~~g~--------ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~-----AIVTdI~---------- 249 (454)
T COG0486 193 KLEELIAELDELLATAKQGK--------ILREGLKVVIIGRPNVGKSSLLNALLGRDR-----AIVTDIA---------- 249 (454)
T ss_pred HHHHHHHHHHHHHHhhhhhh--------hhhcCceEEEECCCCCcHHHHHHHHhcCCc-----eEecCCC----------
Confidence 44455555555554443221 224667899999999999999999999998 8888877
Q ss_pred CcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHH
Q 013508 86 GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED 165 (441)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~ 165 (441)
|++..+-...+. -++.++.++||.|+... ++..+.
T Consensus 250 ----------------------------------GTTRDviee~i~-----i~G~pv~l~DTAGiRet------~d~VE~ 284 (454)
T COG0486 250 ----------------------------------GTTRDVIEEDIN-----LNGIPVRLVDTAGIRET------DDVVER 284 (454)
T ss_pred ----------------------------------CCccceEEEEEE-----ECCEEEEEEecCCcccC------ccHHHH
Confidence 333332222222 24568999999999863 444433
Q ss_pred H-HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEE
Q 013508 166 I-ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGI 244 (441)
Q Consensus 166 i-~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v 244 (441)
+ -+-.++.++++|.+++++ +++..+.. ....+.. ..+.+.++++|+||.|+..+.... .. ....+..+..+
T Consensus 285 iGIeRs~~~i~~ADlvL~v~-D~~~~~~~-~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~-~~----~~~~~~~~i~i 356 (454)
T COG0486 285 IGIERAKKAIEEADLVLFVL-DASQPLDK-EDLALIE-LLPKKKPIIVVLNKADLVSKIELE-SE----KLANGDAIISI 356 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEE-eCCCCCch-hhHHHHH-hcccCCCEEEEEechhcccccccc-hh----hccCCCceEEE
Confidence 2 234667788999666655 55544323 2333333 456789999999999999765311 00 12233345677
Q ss_pred EeCChhhhccCC
Q 013508 245 VNRSQADINRNI 256 (441)
Q Consensus 245 ~~~s~~~~~~~~ 256 (441)
...++.+++.+.
T Consensus 357 Sa~t~~Gl~~L~ 368 (454)
T COG0486 357 SAKTGEGLDALR 368 (454)
T ss_pred EecCccCHHHHH
Confidence 776665554433
No 15
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2.9e-16 Score=147.54 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecC
Q 013508 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (441)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 84 (441)
.++.++++++.+-+..+++.-.....||.+..++|+|+|+|.||+|||||+++|++.+.--..
T Consensus 135 GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~----------------- 197 (346)
T COG1084 135 GRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP----------------- 197 (346)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCC-----------------
Confidence 456677788888777777655556788999999999999999999999999999998741111
Q ss_pred CCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHH
Q 013508 85 DGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVE 164 (441)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~ 164 (441)
.-|+.+.|.+..+..+...+.+|||||+.+-+ .+-..
T Consensus 198 --------------------------------------YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP-----l~ErN 234 (346)
T COG1084 198 --------------------------------------YPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP-----LEERN 234 (346)
T ss_pred --------------------------------------CCccccceeEeeeecCCceEEEecCCcccCCC-----hHHhc
Confidence 23455556666777777799999999998754 33334
Q ss_pred HHHHHHHHhhcC-CCeEEEEeccCcc-ccccHHHHHHHHHhCCC-CCcEEEEeccCCCCCCc
Q 013508 165 DIESMVRSYVEK-PNSVILAISPANQ-DIATSDAMKLAREVDPT-GERTFGVLTKLDLMDKG 223 (441)
Q Consensus 165 ~i~~~v~~yi~~-~~~iil~v~~a~~-~~~~~~~l~l~~~~~~~-~~r~i~VltK~D~~~~~ 223 (441)
.++..+--++++ .++|+++++++.. ++.-++-..|..++.+. ..|++.|+||+|..+..
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 455655556666 4556666655443 44445555567777654 46899999999998654
No 16
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=7.4e-16 Score=153.83 Aligned_cols=182 Identities=18% Similarity=0.158 Sum_probs=106.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+..|++||.||||||||||+|++.+.-......+|+.|+.-.
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Gi-------------------------------------- 200 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGV-------------------------------------- 200 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEE--------------------------------------
Confidence 458999999999999999999998642233345666664311
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc---cccccH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDIATS 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~---~~~~~~ 194 (441)
+...+...++|+||||+......+ ..+. ..+ .++++.++.++++++.+. .+. ..
T Consensus 201 ----------------v~~~~~~~i~~vDtPGi~~~a~~~--~~Lg---~~~-l~~i~radvlL~VVD~s~~~~~d~-~e 257 (390)
T PRK12298 201 ----------------VRVDDERSFVVADIPGLIEGASEG--AGLG---IRF-LKHLERCRVLLHLIDIAPIDGSDP-VE 257 (390)
T ss_pred ----------------EEeCCCcEEEEEeCCCccccccch--hhHH---HHH-HHHHHhCCEEEEEeccCcccccCh-HH
Confidence 222233469999999998743211 1111 233 357888998888876441 121 11
Q ss_pred HHHHHHHHhCC-----CCCcEEEEeccCCCCCCcCcHHHHHcCc--ccccCCCeEEEEeCChhhhccCCcHHHHHHHHHh
Q 013508 195 DAMKLAREVDP-----TGERTFGVLTKLDLMDKGTNALDVLEGR--SYRLQHPWVGIVNRSQADINRNIDMIVARRKERE 267 (441)
Q Consensus 195 ~~l~l~~~~~~-----~~~r~i~VltK~D~~~~~~~~~~~l~~~--~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ 267 (441)
....+.+++.. ...|.++|+||+|+..... ..+.+... .......++.++..+..++......+.....+.+
T Consensus 258 ~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 258 NARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred HHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 11223333322 3589999999999875432 22222210 1111123556666666666666666666666666
Q ss_pred HhccCCCCcccccc
Q 013508 268 YFATSPDYGHLAGK 281 (441)
Q Consensus 268 ff~~~~~~~~~~~~ 281 (441)
+++...++++.+.+
T Consensus 337 ~~~~~~~~td~~~~ 350 (390)
T PRK12298 337 REEAEEAEAPEKVE 350 (390)
T ss_pred ccCCcccccCccHH
Confidence 66655555554433
No 17
>PRK09866 hypothetical protein; Provisional
Probab=99.65 E-value=1.5e-14 Score=147.63 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=41.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEe
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (441)
.-|.++|+|..|+|||||+|+|+|..++|++...+|..|+.+++..
T Consensus 68 ~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~p 113 (741)
T PRK09866 68 LEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTP 113 (741)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecC
Confidence 3489999999999999999999999999999999999999776654
No 18
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=2.4e-15 Score=133.09 Aligned_cols=128 Identities=27% Similarity=0.435 Sum_probs=89.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..|.|+++|..|+|||||||+|+|.+-|.|-+. .|
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk----tP----------------------------------------- 57 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSK----TP----------------------------------------- 57 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCC----CC-----------------------------------------
Confidence 689999999999999999999999774333222 22
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeE--EEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSV--ILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~i--il~v~~a~~~~~~~ 194 (441)
|++ ... ..+..+ ..+.|||+||+.-... +.+..+.+..++.+|++.-..+ +++++++.... ..
T Consensus 58 ---GrT----q~i---Nff~~~-~~~~lVDlPGYGyAkv---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~-~~ 122 (200)
T COG0218 58 ---GRT----QLI---NFFEVD-DELRLVDLPGYGYAKV---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP-KD 122 (200)
T ss_pred ---Ccc----cee---EEEEec-CcEEEEeCCCcccccC---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC-cH
Confidence 211 111 122222 2389999999986543 5677888999999999863223 23334555554 34
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
...++...+...+.++++|+||+|.+.+++
T Consensus 123 ~D~em~~~l~~~~i~~~vv~tK~DKi~~~~ 152 (200)
T COG0218 123 LDREMIEFLLELGIPVIVVLTKADKLKKSE 152 (200)
T ss_pred HHHHHHHHHHHcCCCeEEEEEccccCChhH
Confidence 344677777888999999999999998764
No 19
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=3.5e-15 Score=160.34 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=93.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|++|+|||||+|+|+|.+. .++. .|
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn-----~p------------------------------------------- 34 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGN-----WA------------------------------------------- 34 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCC-----CC-------------------------------------------
Confidence 5799999999999999999999864 1111 11
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~~~ 196 (441)
|. +-+.... ....+...+.+|||||+++......+.+.. +.+.+.|+. .+|.+|+++++.+ .++.
T Consensus 35 -Gv----Tve~k~g-~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~---E~i~~~~l~~~~aD~vI~VvDat~----ler~ 101 (772)
T PRK09554 35 -GV----TVERKEG-QFSTTDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LERN 101 (772)
T ss_pred -Cc----eEeeEEE-EEEcCceEEEEEECCCccccccccccccHH---HHHHHHHHhccCCCEEEEEecCCc----chhh
Confidence 10 0000111 122234579999999998754321222333 345666754 6888877775543 2334
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcH
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDM 258 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~ 258 (441)
+.+..++...+.|+++|+||+|+.++.....+. +.....++.+++++..+...++++..+.
T Consensus 102 l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~-~~L~~~LG~pVvpiSA~~g~GIdeL~~~ 162 (772)
T PRK09554 102 LYLTLQLLELGIPCIVALNMLDIAEKQNIRIDI-DALSARLGCPVIPLVSTRGRGIEALKLA 162 (772)
T ss_pred HHHHHHHHHcCCCEEEEEEchhhhhccCcHHHH-HHHHHHhCCCEEEEEeecCCCHHHHHHH
Confidence 556666777789999999999987544322222 1112234455666666655555444333
No 20
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=1.4e-14 Score=143.16 Aligned_cols=128 Identities=21% Similarity=0.343 Sum_probs=86.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|+|++||.+|+|||||+|+|+|.++...+...+|+-|++-
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~------------------------------------- 229 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTR------------------------------------- 229 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEE-------------------------------------
Confidence 3679999999999999999999999876444444555555321
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-- 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-- 193 (441)
.+..++...+.|+||||+.+.. +.+..+.++. +..++.++|.++++++.++.....
T Consensus 230 -----------------~i~~~~~~~i~l~DT~G~~~~l----~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 230 -----------------RLDLPDGGEVLLTDTVGFIRDL----PHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred -----------------EEEeCCCceEEEEecCcccccC----CHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHH
Confidence 1333345589999999996521 3445554544 345688899888877654332211
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+..+++.+...+.|+++|+||+|+.+.
T Consensus 288 ~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 288 EAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 11234566665557899999999999754
No 21
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.59 E-value=1.8e-14 Score=141.23 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=93.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
++.|++||.||||||||||+|++.+.-......+|+.|+.-.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~-------------------------------------- 199 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGV-------------------------------------- 199 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEE--------------------------------------
Confidence 578999999999999999999987532223345566664311
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~ 195 (441)
+...+...++++||||+......+ ..+.....++++.++++|++++.++.+ +.. ..
T Consensus 200 ----------------v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~ 257 (335)
T PRK12299 200 ----------------VRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKT 257 (335)
T ss_pred ----------------EEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHH
Confidence 222234579999999998643211 112334456777889888887655433 111 11
Q ss_pred HHHHHHHhCC--CCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 196 AMKLAREVDP--TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 196 ~l~l~~~~~~--~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
+...+..+++ ...|.++|+||+|+.+......+............++.+.+.+..+++..+..+
T Consensus 258 ~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L 323 (335)
T PRK12299 258 IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRAL 323 (335)
T ss_pred HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 2223333333 368999999999987544221111111111122345566555555554444433
No 22
>PRK11058 GTPase HflX; Provisional
Probab=99.59 E-value=2.5e-14 Score=144.47 Aligned_cols=128 Identities=19% Similarity=0.318 Sum_probs=83.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+|.|++||.+|||||||+|+|+|.++...+...+|+-|+.-
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~------------------------------------- 237 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLR------------------------------------- 237 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceE-------------------------------------
Confidence 3579999999999999999999999876433333445444320
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH-
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS- 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~- 194 (441)
.+..++...+.|+||||+.+. .|.+..+.+.. ...++.++|.++++++.++.....+
T Consensus 238 -----------------~i~l~~~~~~~l~DTaG~~r~----lp~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 238 -----------------RIDVADVGETVLADTVGFIRH----LPHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENI 295 (426)
T ss_pred -----------------EEEeCCCCeEEEEecCccccc----CCHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHH
Confidence 122233336789999999653 13444444444 3566788998888776544322111
Q ss_pred -HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 -~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+..++..+...+.|+++|+||+|+.+.
T Consensus 296 ~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 296 EAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred HHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1234566666567899999999999753
No 23
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.58 E-value=7.3e-15 Score=144.42 Aligned_cols=157 Identities=19% Similarity=0.294 Sum_probs=102.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+..+|++||.||+|||||+|+|+|.+- .+++..|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR-----~Iv~~~a----------------------------------------- 210 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER-----VIVSDIA----------------------------------------- 210 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce-----EEecCCC-----------------------------------------
Confidence 568999999999999999999999875 3333222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
| -+.+.|...+. .+...+.+|||.|+.+...-. ++.+..--.-+...|..++.++| |.+|..++ ++..
T Consensus 211 ---G----TTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~--e~~E~~Sv~rt~~aI~~a~vvll-viDa~~~~-~~qD 278 (444)
T COG1160 211 ---G----TTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT--ESVEKYSVARTLKAIERADVVLL-VIDATEGI-SEQD 278 (444)
T ss_pred ---C----ccccceeeeEE-ECCeEEEEEECCCCCcccccc--cceEEEeehhhHhHHhhcCEEEE-EEECCCCc-hHHH
Confidence 2 23334444444 345689999999998754221 11111101123456777885555 55677777 4455
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcC--cccccCCCeEEEEeCChhh
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEG--RSYRLQHPWVGIVNRSQAD 251 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~--~~~~l~~g~~~v~~~s~~~ 251 (441)
++++..+...|...++|+||||++++.+...+.... +.....++|.+++..|+..
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecC
Confidence 668888888999999999999999874333332221 1222346788888888755
No 24
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.55 E-value=1.5e-13 Score=126.06 Aligned_cols=129 Identities=23% Similarity=0.387 Sum_probs=80.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|.|+|+|.+|||||||+|+|++..+.+.+....|..|..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~-------------------------------------- 80 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTT-------------------------------------- 80 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecccee--------------------------------------
Confidence 457899999999999999999999987544333333332211
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-- 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-- 193 (441)
..+..++...++||||||+.+.. +........... .++..+|.++++++..+.....
T Consensus 81 ----------------~~~~~~~~~~~~i~Dt~G~~~~~----~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~ 139 (204)
T cd01878 81 ----------------RRLRLPDGREVLLTDTVGFIRDL----PHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQI 139 (204)
T ss_pred ----------------EEEEecCCceEEEeCCCccccCC----CHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHH
Confidence 01222233479999999996531 222323333333 3466788888877554322211
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+.++++.+...+.++++|+||+|+....
T Consensus 140 ~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 140 ETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred HHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 123345555555578999999999997654
No 25
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.55 E-value=3.6e-13 Score=137.57 Aligned_cols=155 Identities=25% Similarity=0.312 Sum_probs=91.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+-++|+++|.+|+|||||+|+|+|.+. .+++..|
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~----------------------------------------- 247 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEER-----AIVTDIA----------------------------------------- 247 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCC-----------------------------------------
Confidence 457899999999999999999999875 2222222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHH-HHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i-~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
|.+. +.+...+. .+...+.++||||+... .+..+.. -.....++.++|.++++++..+ .. ..+
T Consensus 248 ---gtT~----d~~~~~i~-~~g~~i~l~DT~G~~~~------~~~ie~~gi~~~~~~~~~aD~il~VvD~s~-~~-s~~ 311 (449)
T PRK05291 248 ---GTTR----DVIEEHIN-LDGIPLRLIDTAGIRET------DDEVEKIGIERSREAIEEADLVLLVLDASE-PL-TEE 311 (449)
T ss_pred ---Cccc----ccEEEEEE-ECCeEEEEEeCCCCCCC------ccHHHHHHHHHHHHHHHhCCEEEEEecCCC-CC-Chh
Confidence 1110 11111121 13357899999998642 2222211 1235568889998888775533 32 222
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
...+... ..+.|+++|+||+|+.+..... ......++.+...++.+++..+..+....
T Consensus 312 ~~~~l~~--~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 312 DDEILEE--LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred HHHHHHh--cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 3333433 3468999999999997543211 11123456777776666665555554433
No 26
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.55 E-value=4e-13 Score=136.51 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=76.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.+.++|+++|.+|+|||||+|+|++.+. .+++..|.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-----aivs~~pg--------------------------------------- 236 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-----AIVSDIKG--------------------------------------- 236 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCCC---------------------------------------
Confidence 4567999999999999999999999764 22333221
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHH-HHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI-ESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i-~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
.+. +.+...+.. +...+.++||||+... .+..+.. -.....|++.+|+++++++..+ .....
T Consensus 237 -----tTr----d~~~~~i~~-~g~~v~l~DTaG~~~~------~~~ie~~gi~~~~~~~~~aD~il~V~D~s~-~~s~~ 299 (442)
T TIGR00450 237 -----TTR----DVVEGDFEL-NGILIKLLDTAGIREH------ADFVERLGIEKSFKAIKQADLVIYVLDASQ-PLTKD 299 (442)
T ss_pred -----cEE----EEEEEEEEE-CCEEEEEeeCCCcccc------hhHHHHHHHHHHHHHHhhCCEEEEEEECCC-CCChh
Confidence 000 011111111 2346799999999653 1222111 1345678899998888776543 22122
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+ . +...+...+.|+|+|+||+|+...
T Consensus 300 ~-~-~l~~~~~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 300 D-F-LIIDLNKSKKPFILVLNKIDLKIN 325 (442)
T ss_pred H-H-HHHHHhhCCCCEEEEEECccCCCc
Confidence 2 2 444555457899999999999654
No 27
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.54 E-value=8e-14 Score=122.25 Aligned_cols=124 Identities=23% Similarity=0.342 Sum_probs=78.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccc-cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
-.+|+++|.+|||||||+|+|+|.++.+..... +|+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR----------------------------------------- 41 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceece-----------------------------------------
Confidence 357999999999999999999998752222111 11100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+. .+.......+.++||||+.... ......+......++...|.+++++..... . .+..
T Consensus 42 -------------~~-~~~~~~~~~~~liDtpG~~~~~-----~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~-~-~~~~ 100 (168)
T cd04163 42 -------------IR-GIYTDDDAQIIFVDTPGIHKPK-----KKLGERMVKAAWSALKDVDLVLFVVDASEP-I-GEGD 100 (168)
T ss_pred -------------EE-EEEEcCCeEEEEEECCCCCcch-----HHHHHHHHHHHHHHHHhCCEEEEEEECCCc-c-CchH
Confidence 00 1222234579999999997642 112223445667778889988887765443 2 2223
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+.+.+...+.+.++|+||+|+....
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 127 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKDK 127 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhccccH
Confidence 334445554578999999999998543
No 28
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=9e-14 Score=126.73 Aligned_cols=125 Identities=21% Similarity=0.344 Sum_probs=74.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccc--ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+|+++|.+|+|||||+|+|+|.+.+.++.. .+|+.+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~--------------------------------------- 42 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKE--------------------------------------- 42 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCccccccee---------------------------------------
Confidence 699999999999999999999987655432 233332110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH--H
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--D 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~--~ 195 (441)
-...+...+++|||||+.+... ........+...+......++++++++ ++.. +... .
T Consensus 43 ----------------~~~~~~~~i~viDTPG~~d~~~--~~~~~~~~i~~~~~~~~~g~~~illVi-~~~~-~t~~d~~ 102 (196)
T cd01852 43 ----------------SAVWDGRRVNVIDTPGLFDTSV--SPEQLSKEIVRCLSLSAPGPHAFLLVV-PLGR-FTEEEEQ 102 (196)
T ss_pred ----------------eEEECCeEEEEEECcCCCCccC--ChHHHHHHHHHHHHhcCCCCEEEEEEE-ECCC-cCHHHHH
Confidence 0011345899999999987532 122233233333333345577666655 4444 3222 2
Q ss_pred HHHHHHHh-CC-CCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREV-DP-TGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~-~~-~~~r~i~VltK~D~~~~~ 223 (441)
.++.++++ .+ ...++++|+|+.|.+...
T Consensus 103 ~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 103 AVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred HHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 33333332 21 126899999999998654
No 29
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.52 E-value=1e-13 Score=124.39 Aligned_cols=124 Identities=24% Similarity=0.338 Sum_probs=79.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCccccc--ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
...|.|+|+|.+|+|||||+|+|+|..+.+.-+. .+|+.+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 57 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLI-------------------------------------- 57 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEE--------------------------------------
Confidence 4688999999999999999999999864222111 011111
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC---CCeEEEEeccCccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK---PNSVILAISPANQD 190 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~---~~~iil~v~~a~~~ 190 (441)
....+ + .++.+|||||+.... .+.........++..|++. .+++++++ +++.+
T Consensus 58 ----------------~~~~~--~--~~~~liDtpG~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~ii~vv-d~~~~ 113 (179)
T TIGR03598 58 ----------------NFFEV--N--DGFRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLEKRENLKGVVLLM-DIRHP 113 (179)
T ss_pred ----------------EEEEe--C--CcEEEEeCCCCcccc---CChhHHHHHHHHHHHHHHhChhhcEEEEEe-cCCCC
Confidence 00111 1 379999999986532 1233344556677778765 35666655 44544
Q ss_pred cccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+. ....++.+.+...+.|+++|+||+|++..
T Consensus 114 ~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 114 LK-ELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred CC-HHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 43 33334556666678999999999999854
No 30
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.52 E-value=7.9e-14 Score=123.23 Aligned_cols=117 Identities=17% Similarity=0.253 Sum_probs=73.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
|.|+|+|.+|+|||||+|+|++..+.......+|+...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~------------------------------------------ 38 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIG------------------------------------------ 38 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeec------------------------------------------
Confidence 78999999999999999999988763221112222110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
...+....+...++++|||||.... ..+...++..+|+++++++..... ......
T Consensus 39 ----------~~~~~~~~~~~~~~~iiDtpG~~~~-------------~~~~~~~~~~~d~il~v~d~~~~~--~~~~~~ 93 (168)
T cd01887 39 ----------AFEVPAEVLKIPGITFIDTPGHEAF-------------TNMRARGASLTDIAILVVAADDGV--MPQTIE 93 (168)
T ss_pred ----------cEEEecccCCcceEEEEeCCCcHHH-------------HHHHHHHHhhcCEEEEEEECCCCc--cHHHHH
Confidence 0000111023568999999997431 345566778899888877654322 223333
Q ss_pred HHHHhCCCCCcEEEEeccCCCCCC
Q 013508 199 LAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+..+...+.|.++|+||+|+...
T Consensus 94 ~~~~~~~~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 94 AIKLAKAANVPFIVALNKIDKPNA 117 (168)
T ss_pred HHHHHHHcCCCEEEEEEceecccc
Confidence 333344457899999999998743
No 31
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.52 E-value=1.2e-13 Score=125.56 Aligned_cols=125 Identities=25% Similarity=0.371 Sum_probs=77.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccc--cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
..+|.|+|+|.+|+|||||+|+|+|.++.+..+.. +|+.+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 63 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI-------------------------------------- 63 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEE--------------------------------------
Confidence 46899999999999999999999997643322111 11111
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCC---eEEEEeccCccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQD 190 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~---~iil~v~~a~~~ 190 (441)
..... ..++.||||||+.... .+....+....++..|+...+ .+++++ ++...
T Consensus 64 -------------------~~~~~-~~~l~l~DtpG~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~~~ 119 (196)
T PRK00454 64 -------------------NFFEV-NDKLRLVDLPGYGYAK---VSKEEKEKWQKLIEEYLRTRENLKGVVLLI-DSRHP 119 (196)
T ss_pred -------------------EEEec-CCeEEEeCCCCCCCcC---CCchHHHHHHHHHHHHHHhCccceEEEEEE-ecCCC
Confidence 01111 2579999999986432 133344555677788887653 343433 33333
Q ss_pred cccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.. ....++.+.+...+.++++|+||+|+...+
T Consensus 120 ~~-~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 120 LK-ELDLQMIEWLKEYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred CC-HHHHHHHHHHHHcCCcEEEEEECcccCCHH
Confidence 32 222233444455678899999999998654
No 32
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=2.2e-13 Score=120.57 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
|.|+++|.+|+|||||+|+|++..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~ 25 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP 25 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence 7899999999999999999999875
No 33
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.5e-13 Score=114.16 Aligned_cols=115 Identities=23% Similarity=0.386 Sum_probs=73.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
+|+|+|.+|+|||||+|+|+|.+..+.+. ..+|+.+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~----------------------------------------- 39 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVY----------------------------------------- 39 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEE-----------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeee-----------------------------------------
Confidence 58999999999999999999976533332 344554421
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
.........+.|+||||+...... ......+ ..+.+.+...|.+++++. ++.. ......+
T Consensus 40 --------------~~~~~~~~~~~~vDtpG~~~~~~~---~~~~~~~-~~~~~~~~~~d~ii~vv~-~~~~-~~~~~~~ 99 (116)
T PF01926_consen 40 --------------GQFEYNNKKFILVDTPGINDGESQ---DNDGKEI-RKFLEQISKSDLIIYVVD-ASNP-ITEDDKN 99 (116)
T ss_dssp --------------EEEEETTEEEEEEESSSCSSSSHH---HHHHHHH-HHHHHHHCTESEEEEEEE-TTSH-SHHHHHH
T ss_pred --------------eeeeeceeeEEEEeCCCCcccchh---hHHHHHH-HHHHHHHHHCCEEEEEEE-CCCC-CCHHHHH
Confidence 011113446789999999764211 0001122 334555578888888776 4442 2344556
Q ss_pred HHHHhCCCCCcEEEEecc
Q 013508 199 LAREVDPTGERTFGVLTK 216 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK 216 (441)
+++++. .+.|+++|+||
T Consensus 100 ~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 100 ILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHH-TTSEEEEEEES
T ss_pred HHHHHh-cCCCEEEEEcC
Confidence 677776 78999999998
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.50 E-value=1.9e-13 Score=121.08 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=71.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
.|+++|.+|||||||+|+|+|.+..+......|+.|..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~------------------------------------------ 39 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNL------------------------------------------ 39 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcc------------------------------------------
Confidence 48999999999999999999876421111122332211
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~--~~~ 196 (441)
+ . +...+...+.|+||||+...... ...+ .....+.+..+|+++++++..+. +... ..+
T Consensus 40 ~----------~--~~~~~~~~~~l~DtpG~~~~~~~--~~~~----~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~ 101 (170)
T cd01898 40 G----------V--VRVDDGRSFVVADIPGLIEGASE--GKGL----GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTI 101 (170)
T ss_pred e----------E--EEcCCCCeEEEEecCcccCcccc--cCCc----hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHH
Confidence 1 0 11122247999999998653211 1111 12223345568888888765443 1111 122
Q ss_pred HHHHHHhCC--CCCcEEEEeccCCCCCCcC
Q 013508 197 MKLAREVDP--TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 197 l~l~~~~~~--~~~r~i~VltK~D~~~~~~ 224 (441)
.+.+....+ .+.|.++|+||+|+.++..
T Consensus 102 ~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 102 RNELELYNPELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred HHHHHHhCccccccccEEEEEchhcCCchh
Confidence 223333332 3689999999999976543
No 35
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=6.1e-13 Score=137.16 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCc-ccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLP-RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP-~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..++|+++|.+|+|||||+|+|+|..+.. .....+|+-+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~--------------------------------------- 250 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPV--------------------------------------- 250 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcc---------------------------------------
Confidence 46899999999999999999999987521 11112222221
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHH-HHHhhcCCCeEEEEeccCccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
...+.. +...+.||||||+.+.... ....+....+ ...+++.+|++|++++. .... +.
T Consensus 251 ---------------~~~~~~-~~~~~~l~DTaG~~~~~~~---~~~~e~~~~~~~~~~i~~ad~vilV~Da-~~~~-s~ 309 (472)
T PRK03003 251 ---------------DSLIEL-GGKTWRFVDTAGLRRRVKQ---ASGHEYYASLRTHAAIEAAEVAVVLIDA-SEPI-SE 309 (472)
T ss_pred ---------------eEEEEE-CCEEEEEEECCCccccccc---cchHHHHHHHHHHHHHhcCCEEEEEEeC-CCCC-CH
Confidence 101111 2346789999999653211 1112222222 34578889988887754 3333 34
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++++..+...+.++|+|+||+|+.+.
T Consensus 310 ~~~~~~~~~~~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 310 QDQRVLSMVIEAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEEECcccCCh
Confidence 4445666666678999999999999853
No 36
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.49 E-value=2.2e-13 Score=138.58 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=90.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+..|++||.||||||||||+|++.+.-......+|+.|+.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~l---------------------------------------- 198 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNL---------------------------------------- 198 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceE----------------------------------------
Confidence 5789999999999999999999976322233345555532
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc----c-cc
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ----D-IA 192 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~----~-~~ 192 (441)
| +.......++|+||||++..... ...+.....+++.+++.+|++|+.++. + +.
T Consensus 199 --G-------------vv~~~~~~f~laDtPGliegas~------g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~ 257 (500)
T PRK12296 199 --G-------------VVQAGDTRFTVADVPGLIPGASE------GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLS 257 (500)
T ss_pred --E-------------EEEECCeEEEEEECCCCccccch------hhHHHHHHHHHHHhcCEEEEEECCcccccccCchh
Confidence 1 11112347899999999864311 111222344567788988887765431 1 11
Q ss_pred cHHH-HHHHHHhC-----------CCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHH
Q 013508 193 TSDA-MKLAREVD-----------PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (441)
Q Consensus 193 ~~~~-l~l~~~~~-----------~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 260 (441)
.-+. ...+..+. ..+.|.|+|+||+|+.+... ..+.+..........++.++..+..+++.++..+.
T Consensus 258 d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-l~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ 336 (500)
T PRK12296 258 DIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-LAEFVRPELEARGWPVFEVSAASREGLRELSFALA 336 (500)
T ss_pred hHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-HHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 1111 11122222 24689999999999864332 22222111111123445666555555555544444
Q ss_pred HH
Q 013508 261 AR 262 (441)
Q Consensus 261 ~~ 262 (441)
..
T Consensus 337 el 338 (500)
T PRK12296 337 EL 338 (500)
T ss_pred HH
Confidence 33
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.48 E-value=4.9e-13 Score=136.72 Aligned_cols=126 Identities=20% Similarity=0.310 Sum_probs=79.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+|+|+|.+|+|||||+|+|+|.+..+.+. ..+|+.+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~---------------------------------------- 210 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS---------------------------------------- 210 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc----------------------------------------
Confidence 45789999999999999999999986422211 1122211
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+...+.. +...+++|||||+.+.... ..............++..+|++|++++. ..+. +..
T Consensus 211 --------------~~~~~~~-~~~~~~liDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilV~D~-~~~~-~~~ 271 (429)
T TIGR03594 211 --------------IDIPFER-NGKKYLLIDTAGIRRKGKV--TEGVEKYSVLRTLKAIERADVVLLVLDA-TEGI-TEQ 271 (429)
T ss_pred --------------EeEEEEE-CCcEEEEEECCCccccccc--hhhHHHHHHHHHHHHHHhCCEEEEEEEC-CCCc-cHH
Confidence 1111211 2347899999999764311 1112211112345678899988887754 3444 344
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..++++.+...+.+.|+|+||+|+.+
T Consensus 272 ~~~~~~~~~~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 272 DLRIAGLILEAGKALVIVVNKWDLVK 297 (429)
T ss_pred HHHHHHHHHHcCCcEEEEEECcccCC
Confidence 45566766667899999999999983
No 38
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=3.2e-13 Score=132.21 Aligned_cols=125 Identities=22% Similarity=0.270 Sum_probs=77.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
++.|++||.||||||||+|+|++...-......+|+.|+.-.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~-------------------------------------- 198 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV-------------------------------------- 198 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE--------------------------------------
Confidence 478999999999999999999987532223344566664311
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~ 195 (441)
+...+...++|+||||+...... .. .+.....++++.++.++++++.++.+. ..+.
T Consensus 199 ----------------v~~~~~~~~~i~D~PGli~~a~~--~~----gLg~~flrhierad~ll~VvD~s~~~~~~~~e~ 256 (329)
T TIGR02729 199 ----------------VRVDDGRSFVIADIPGLIEGASE--GA----GLGHRFLKHIERTRVLLHLIDISPLDGRDPIED 256 (329)
T ss_pred ----------------EEeCCceEEEEEeCCCcccCCcc--cc----cHHHHHHHHHHhhCEEEEEEcCccccccCHHHH
Confidence 11122357899999999764321 11 122344556777898888876544311 0111
Q ss_pred ---HHHHHHHhCC--CCCcEEEEeccCCCCCC
Q 013508 196 ---AMKLAREVDP--TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ---~l~l~~~~~~--~~~r~i~VltK~D~~~~ 222 (441)
+.+.+..+.+ ...|.++|+||+|+...
T Consensus 257 l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 257 YEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred HHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 2222333332 36899999999999765
No 39
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.48 E-value=4e-13 Score=118.56 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=89.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.++||||||++++++.++-+.....++....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 41 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA----------------------------------------- 41 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-----------------------------------------
Confidence 458999999999999999999998863222211111110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~ 195 (441)
...+.+.+ ....+.++|+||.... ..+...|++.++++|++++..+.... ...
T Consensus 42 -----------~~~~~~~~-~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 96 (165)
T cd01868 42 -----------TRSIQIDG-KTIKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITKKQTFENVER 96 (165)
T ss_pred -----------EEEEEECC-EEEEEEEEeCCChHHH-------------HHHHHHHHCCCCEEEEEEECcCHHHHHHHHH
Confidence 01111111 1246889999997432 46677888889988888765432211 122
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
++..++...+.+.|+++|.||+|+........+.........+.+|+.+.+.++.+++..+
T Consensus 97 ~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 97 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred HHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 3344444455568999999999987543221111111111223457777776665554433
No 40
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=5.9e-13 Score=133.81 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=74.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
++.|++||.||||||||||+|++.+.-......+|..|+.-.
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~-------------------------------------- 199 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGV-------------------------------------- 199 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEE--------------------------------------
Confidence 458999999999999999999987621112234555553210
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc---cccc-
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT- 193 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~---~~~~- 193 (441)
+...+...++|+||||+......+ . .+.....++++.++.+|++++.++. +...
T Consensus 200 ----------------v~~~~~~~~~laD~PGliega~~~--~----gLg~~fLrhier~~llI~VID~s~~~~~dp~e~ 257 (424)
T PRK12297 200 ----------------VETDDGRSFVMADIPGLIEGASEG--V----GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIED 257 (424)
T ss_pred ----------------EEEeCCceEEEEECCCCccccccc--c----hHHHHHHHHHhhCCEEEEEEeCCccccCChHHH
Confidence 112224579999999998633211 1 1122334556678988888876432 1111
Q ss_pred -HHHHHHHHHhCC--CCCcEEEEeccCCCC
Q 013508 194 -SDAMKLAREVDP--TGERTFGVLTKLDLM 220 (441)
Q Consensus 194 -~~~l~l~~~~~~--~~~r~i~VltK~D~~ 220 (441)
..+.+.+..+.+ .+.|.++|+||+|+.
T Consensus 258 ~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 258 YEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred HHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 112223333433 478999999999974
No 41
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.47 E-value=7.9e-13 Score=116.92 Aligned_cols=128 Identities=22% Similarity=0.279 Sum_probs=76.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.++|+++|.+++|||||+|+|+|....+.+....|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRD------------------------------------------ 39 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccC------------------------------------------
Confidence 46899999999999999999999864322221111100
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
... .. +. .+..++++|||||+...... ..............++..+|.++++++. +... .....
T Consensus 40 -------~~~--~~--~~-~~~~~~~iiDtpG~~~~~~~--~~~~e~~~~~~~~~~~~~~d~vi~v~d~-~~~~-~~~~~ 103 (174)
T cd01895 40 -------SID--VP--FE-YDGKKYTLIDTAGIRRKGKV--EEGIEKYSVLRTLKAIERADVVLLVIDA-TEGI-TEQDL 103 (174)
T ss_pred -------cee--eE--EE-ECCeeEEEEECCCCccccch--hccHHHHHHHHHHHHHhhcCeEEEEEeC-CCCc-chhHH
Confidence 000 00 11 12346899999999764211 1112111112234566778887777754 3333 33344
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+.+.+...+.+.++|+||+|+.+..
T Consensus 104 ~~~~~~~~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 104 RIAGLILEEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHHHHHhcCCCEEEEEeccccCCcc
Confidence 45555555678999999999998663
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=3.5e-13 Score=138.98 Aligned_cols=161 Identities=19% Similarity=0.266 Sum_probs=96.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|.|+|||.+|+|||||+|+|+|..+ ..+...|
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~-----~~v~~~~---------------------------------------- 70 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRRE-----AVVEDVP---------------------------------------- 70 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCc-----ccccCCC----------------------------------------
Confidence 3579999999999999999999999764 1111111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
| ++.+.+...+.. ....+.||||||+... ...+...+...+..|+..+|.+|++++..+ .. +..
T Consensus 71 ----g----vT~d~~~~~~~~-~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~il~VvD~~~-~~-s~~ 134 (472)
T PRK03003 71 ----G----VTRDRVSYDAEW-NGRRFTVVDTGGWEPD-----AKGLQASVAEQAEVAMRTADAVLFVVDATV-GA-TAT 134 (472)
T ss_pred ----C----CCEeeEEEEEEE-CCcEEEEEeCCCcCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHH
Confidence 1 111111111211 2346899999998632 233555667778889999998888876543 22 222
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCC-eEEEEeCChhhhccCCcHHHHH
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
...++..+...+.|+|+|+||+|+.....+..+. +.++.+ .+.+.+..+.+++.+++.+...
T Consensus 135 ~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~-----~~~g~~~~~~iSA~~g~gi~eL~~~i~~~ 197 (472)
T PRK03003 135 DEAVARVLRRSGKPVILAANKVDDERGEADAAAL-----WSLGLGEPHPVSALHGRGVGDLLDAVLAA 197 (472)
T ss_pred HHHHHHHHHHcCCCEEEEEECccCCccchhhHHH-----HhcCCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence 2345555555689999999999986433222222 122221 2456666555555555444433
No 43
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=9.9e-13 Score=134.45 Aligned_cols=151 Identities=20% Similarity=0.248 Sum_probs=93.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcc-cccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPR-GSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~-~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.|++||.+|+|||||+|+|+|.+.-.. ....+||...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~------------------------------------------ 38 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRK------------------------------------------ 38 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCce------------------------------------------
Confidence 489999999999999999999864111 1112222221
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
...+.. ....+.+|||||+... ...+.+.+...+..+++.+|.++++++. ..+. +.....
T Consensus 39 ------------~~~~~~-~~~~~~liDTpG~~~~-----~~~~~~~~~~~~~~~~~~ad~vl~vvD~-~~~~-~~~d~~ 98 (429)
T TIGR03594 39 ------------YGDAEW-GGREFILIDTGGIEED-----DDGLDKQIREQAEIAIEEADVILFVVDG-REGL-TPEDEE 98 (429)
T ss_pred ------------EEEEEE-CCeEEEEEECCCCCCc-----chhHHHHHHHHHHHHHhhCCEEEEEEeC-CCCC-CHHHHH
Confidence 111211 2346899999998642 2345566778888999999987777754 4344 333344
Q ss_pred HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCC-CeEEEEeCChhhhccCCc
Q 013508 199 LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH-PWVGIVNRSQADINRNID 257 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~ 257 (441)
+++.+...+.++++|+||+|+........+. +.++. .++.+....+.++.+..+
T Consensus 99 i~~~l~~~~~piilVvNK~D~~~~~~~~~~~-----~~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 99 IAKWLRKSGKPVILVANKIDGKKEDAVAAEF-----YSLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred HHHHHHHhCCCEEEEEECccCCcccccHHHH-----HhcCCCCeEEEeCCcCCChHHHHH
Confidence 5555555689999999999988654332222 22233 245555544444443333
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.45 E-value=8.8e-13 Score=119.65 Aligned_cols=117 Identities=14% Similarity=0.178 Sum_probs=71.7
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.||||||... ...+...|+..++++|++++..+.+. . ...++..+....+.+.|+++|.||+
T Consensus 50 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~ 116 (191)
T cd04112 50 VKLQIWDTAGQER-------------FRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKA 116 (191)
T ss_pred EEEEEEeCCCcHH-------------HHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcc
Confidence 4688999999532 24566778899998888876544211 0 1223444555566678999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHHHHHhHh
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYF 269 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff 269 (441)
|+....................+|+.+...+..+++..+..+.+...+....
T Consensus 117 Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 117 DMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred cchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9974332111111101112234678887777777777777776666655433
No 45
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.45 E-value=7.2e-13 Score=116.29 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=72.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+|||||||+|++++.++.+......+.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------------ 39 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLS------------------------------------------ 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEE------------------------------------------
Confidence 68999999999999999999998733222222211110
Q ss_pred CCCCCcCCcceEEEEecCC-CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHH
Q 013508 120 GKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~-~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~ 196 (441)
-.+..++ ...+.++||||... ...++..+++..+++|++++..+.. +.. ..+
T Consensus 40 ------------~~~~~~~~~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 94 (161)
T cd01861 40 ------------KTMYLEDKTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW 94 (161)
T ss_pred ------------EEEEECCEEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 0111111 23689999999533 1467888899999888877554321 111 122
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+.......+.+.|+++|+||+|+..+.
T Consensus 95 ~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 95 IDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred HHHHHHhCCCCCEEEEEEEChhccccC
Confidence 222222223358999999999996443
No 46
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.44 E-value=1.4e-12 Score=115.66 Aligned_cols=153 Identities=14% Similarity=0.164 Sum_probs=87.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|||.+|+|||||++++++..+-+......+....
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 42 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG---------------------------------------- 42 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE----------------------------------------
Confidence 3568999999999999999999998763332221111110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
...+.+.+ ....+.++||||... ...+...|++.+++++++++..+. ..-+..
T Consensus 43 ------------~~~~~~~~-~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~il~v~d~~~~-~s~~~~ 95 (168)
T cd01866 43 ------------ARMITIDG-KQIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRR-ETFNHL 95 (168)
T ss_pred ------------EEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 01111211 123688999999532 246678889999998887765432 112222
Q ss_pred HHHHHHh---CCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 197 MKLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 197 l~l~~~~---~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
.++...+ ...+.|+++|.||+|+..+...............+..|+.+...+..++...+
T Consensus 96 ~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 96 TSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred HHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2333322 23468899999999997543211111111111223456666665555544433
No 47
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.44 E-value=9.7e-13 Score=134.75 Aligned_cols=127 Identities=22% Similarity=0.299 Sum_probs=80.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
+.++|+|+|.+|+|||||+|+|+|.+..+.+.. .+|+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~---------------------------------------- 211 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDS---------------------------------------- 211 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEE----------------------------------------
Confidence 468999999999999999999999864322211 112211
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+...+. .+...+.+|||||+.+.... ..........-..+++..+|.+|++++. ..+. +..
T Consensus 212 --------------~~~~~~-~~~~~~~lvDT~G~~~~~~~--~~~~e~~~~~~~~~~~~~ad~~ilViD~-~~~~-~~~ 272 (435)
T PRK00093 212 --------------IDTPFE-RDGQKYTLIDTAGIRRKGKV--TEGVEKYSVIRTLKAIERADVVLLVIDA-TEGI-TEQ 272 (435)
T ss_pred --------------EEEEEE-ECCeeEEEEECCCCCCCcch--hhHHHHHHHHHHHHHHHHCCEEEEEEeC-CCCC-CHH
Confidence 111121 23457899999999764321 1111111112234678889987777654 4444 344
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++++.+...+.++++|+||+|+.+.
T Consensus 273 ~~~i~~~~~~~~~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 273 DLRIAGLALEAGRALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCH
Confidence 455677776678999999999999843
No 48
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=1.2e-12 Score=115.82 Aligned_cols=104 Identities=14% Similarity=0.171 Sum_probs=60.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||||.... ..+...|++..++++++++..+... ...+++..+....+...|.++|.||+
T Consensus 50 ~~~~l~Dt~g~~~~-------------~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~ 116 (165)
T cd01865 50 VKLQIWDTAGQERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKC 116 (165)
T ss_pred EEEEEEECCChHHH-------------HHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECc
Confidence 46889999996432 4567788999998888876543211 11223333444444567899999999
Q ss_pred CCCCCcCc-HHHHHcCcccccCCCeEEEEeCChhhhccCCc
Q 013508 218 DLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNID 257 (441)
Q Consensus 218 D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~ 257 (441)
|+.+.... ..+... ....++.+|+.+.+.++.++...++
T Consensus 117 Dl~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 117 DMEDERVVSSERGRQ-LADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ccCcccccCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99765421 111110 1112233466666555545444333
No 49
>PRK04213 GTP-binding protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=119.53 Aligned_cols=125 Identities=22% Similarity=0.356 Sum_probs=73.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+.|+++|.+|+|||||+|+|+|..+ +.+. ..+|+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~t~~~---------------------------------------- 46 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKRPGVTRKP---------------------------------------- 46 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCceeeCc----------------------------------------
Confidence 468999999999999999999999874 3221 1112211
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc-C---CCeEEEEeccCcc--
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-K---PNSVILAISPANQ-- 189 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~---~~~iil~v~~a~~-- 189 (441)
..+.+ .++++|||||+..... -++...+.++.++..|+. . .+.+++++++...
T Consensus 47 --------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~ 105 (201)
T PRK04213 47 --------------NHYDW-----GDFILTDLPGFGFMSG--VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIE 105 (201)
T ss_pred --------------eEEee-----cceEEEeCCccccccc--cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccc
Confidence 11111 1689999999754321 122334556677777765 2 3444555443221
Q ss_pred ---ccc----cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 190 ---DIA----TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 190 ---~~~----~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+. ......+...+...+.|.++|+||+|+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 106 IIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred cccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH
Confidence 110 1112233444444578999999999987543
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.43 E-value=1.5e-12 Score=115.25 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=87.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+++|++|+|||||++++++.+|-+.. .......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~-~~t~~~~------------------------------------------ 39 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSF-ISTIGID------------------------------------------ 39 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCccc-ccCccce------------------------------------------
Confidence 468999999999999999999998762211 1100000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~ 195 (441)
.....+.+. .....+.++||||.... ..+...+++++|++|++++..+.+- ....
T Consensus 40 ---------~~~~~~~~~-~~~~~l~l~D~~g~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~ 96 (167)
T cd01867 40 ---------FKIRTIELD-GKKIKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDEKSFENIRN 96 (167)
T ss_pred ---------EEEEEEEEC-CEEEEEEEEeCCchHHH-------------HHHHHHHhCCCCEEEEEEECcCHHHHHhHHH
Confidence 000011111 12247889999996432 3566788899998888876533211 0122
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
++..+....+.+.|+++|.||+|+.+......+.........+.+|+.+...+..++++.+
T Consensus 97 ~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 157 (167)
T cd01867 97 WMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAF 157 (167)
T ss_pred HHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 3333334445578999999999998543221111111112233456666666655544433
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.42 E-value=2.4e-12 Score=131.85 Aligned_cols=152 Identities=21% Similarity=0.246 Sum_probs=90.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccc-ccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
|.|++||.+|+|||||+|+|+|......+ ...+|+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~------------------------------------------ 39 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDR------------------------------------------ 39 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccc------------------------------------------
Confidence 78999999999999999999998741111 11112111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
..-.+.. +...+.+|||||+... ..+....+...+..++..+|++|++++... .. +....
T Consensus 40 ------------~~~~~~~-~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvd~~~-~~-~~~~~ 99 (435)
T PRK00093 40 ------------IYGEAEW-LGREFILIDTGGIEPD-----DDGFEKQIREQAELAIEEADVILFVVDGRA-GL-TPADE 99 (435)
T ss_pred ------------eEEEEEE-CCcEEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEECCC-CC-CHHHH
Confidence 1101111 2357999999999762 123555567778888999998888776533 33 22222
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCC-eEEEEeCChhhhccCCc
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNID 257 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~ 257 (441)
.+++.+...+.|+++|+||+|..+......+. +.+..+ ++.+....+.++...++
T Consensus 100 ~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~-----~~lg~~~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 100 EIAKILRKSNKPVILVVNKVDGPDEEADAYEF-----YSLGLGEPYPISAEHGRGIGDLLD 155 (435)
T ss_pred HHHHHHHHcCCcEEEEEECccCccchhhHHHH-----HhcCCCCCEEEEeeCCCCHHHHHH
Confidence 34444444588999999999975432222222 222222 45565555544444333
No 52
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=7.5e-13 Score=115.30 Aligned_cols=77 Identities=14% Similarity=0.283 Sum_probs=50.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
..+.++||||+.... ......+...+..++...|.++++++... .... ....+.+.+...+.|+++|+||+|+
T Consensus 45 ~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~d~ii~v~d~~~-~~~~-~~~~~~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 45 REFILIDTGGIEPDD-----EGISKEIREQAELAIEEADVILFVVDGRE-GLTP-ADEEIAKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred eEEEEEECCCCCCch-----hHHHHHHHHHHHHHHHhCCEEEEEEeccc-cCCc-cHHHHHHHHHhcCCCEEEEEECccc
Confidence 578999999997642 12333344556677888998888775533 2212 2223444444457999999999999
Q ss_pred CCCc
Q 013508 220 MDKG 223 (441)
Q Consensus 220 ~~~~ 223 (441)
....
T Consensus 118 ~~~~ 121 (157)
T cd01894 118 IKEE 121 (157)
T ss_pred CChH
Confidence 8654
No 53
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.42 E-value=4.4e-12 Score=110.32 Aligned_cols=120 Identities=27% Similarity=0.348 Sum_probs=72.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.|+++|++++|||||+|+|+|..+...+.. .+|+.+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 39 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDV------------------------------------------- 39 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccce-------------------------------------------
Confidence 699999999999999999999875221111 111111
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
....+. .....++++||||+.... .......-.....++..++.++++++..+ .. .....+
T Consensus 40 -----------~~~~~~-~~~~~~~i~DtpG~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~v~d~~~-~~-~~~~~~ 100 (157)
T cd04164 40 -----------IEESID-IGGIPVRLIDTAGIRETE-----DEIEKIGIERAREAIEEADLVLFVIDASR-GL-DEEDLE 100 (157)
T ss_pred -----------EEEEEE-eCCEEEEEEECCCcCCCc-----chHHHHHHHHHHHHHhhCCEEEEEEECCC-CC-CHHHHH
Confidence 111111 224578999999987642 11211112344566778888777765543 22 333333
Q ss_pred HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 199 LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 199 l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+... ..+.|+++|+||+|+.+..
T Consensus 101 ~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 101 ILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHHh--hcCCCEEEEEEchhcCCcc
Confidence 4443 3478999999999998654
No 54
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.42 E-value=2.2e-12 Score=113.95 Aligned_cols=104 Identities=14% Similarity=0.237 Sum_probs=59.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||||.... ..+...|++.++++|++++..+... ....++..++.....+.+.++|.||+
T Consensus 51 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~ 117 (166)
T cd01869 51 IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 117 (166)
T ss_pred EEEEEEECCCcHhH-------------HHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 46789999996332 4677788999999998886644221 01122333333333467999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
|+........+...........+++.+.+..+.++.+.+
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 118 DLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred hcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 986543211111111111223456666666555544433
No 55
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=119.09 Aligned_cols=124 Identities=25% Similarity=0.337 Sum_probs=82.2
Q ss_pred cCCCeEE-EECCCCCcHHHHHHHHhCCCCCccc-ccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPSVA-VVGGQSSGKSSVLESVVGRDFLPRG-SGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~Iv-VvG~~ssGKSSllnaL~G~~~lP~~-~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
..-|..+ ++|..++||||++|||.+...-|+. .+.||+-++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~----------------------------------- 80 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL----------------------------------- 80 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-----------------------------------
Confidence 4556655 9999999999999999976655554 34555544211
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA 192 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~ 192 (441)
....+...|+|+||||+.+.. +-....+..++.|+.+.| ++|++.++.. ++.
T Consensus 81 --------------------~~~~~~~~l~lwDtPG~gdg~------~~D~~~r~~~~d~l~~~D-LvL~l~~~~draL~ 133 (296)
T COG3596 81 --------------------RLSYDGENLVLWDTPGLGDGK------DKDAEHRQLYRDYLPKLD-LVLWLIKADDRALG 133 (296)
T ss_pred --------------------HhhccccceEEecCCCcccch------hhhHHHHHHHHHHhhhcc-EEEEeccCCCcccc
Confidence 111234689999999997642 222335688899999998 4555555543 433
Q ss_pred cHHHHHHHHHhC--CCCCcEEEEeccCCCCCCc
Q 013508 193 TSDAMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 ~~~~l~l~~~~~--~~~~r~i~VltK~D~~~~~ 223 (441)
... .+++.+. -.+.|+++|+|.+|...++
T Consensus 134 ~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 134 TDE--DFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred CCH--HHHHHHHHhccCceeEEEEehhhhhccc
Confidence 322 3344432 2248999999999998876
No 56
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.42 E-value=1.2e-12 Score=114.30 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
.++.+|||||+..... .... ..+...|+. ..+++|++++.... .....+..++...+.+.++|+||+
T Consensus 43 ~~~~liDtpG~~~~~~----~~~~---~~~~~~~~~~~~~d~vi~v~d~~~~----~~~~~~~~~~~~~~~~~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSP----YSED---EKVARDFLLGEKPDLIVNVVDATNL----ERNLYLTLQLLELGLPVVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCC----CChh---HHHHHHHhcCCCCcEEEEEeeCCcc----hhHHHHHHHHHHcCCCEEEEEehh
Confidence 4799999999976431 1111 245566665 78888887755331 112233444444578999999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+.+..
T Consensus 112 Dl~~~~ 117 (158)
T cd01879 112 DEAEKR 117 (158)
T ss_pred hhcccc
Confidence 997643
No 57
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.42 E-value=1.8e-12 Score=114.05 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=46.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHH-HHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMK-LAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~-l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||.... ..+...|++..++++++++..+..- . ...+.. +.+.....+.|+++|+||
T Consensus 50 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 116 (164)
T cd04145 50 AILDILDTAGQEEF-------------SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNK 116 (164)
T ss_pred EEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeC
Confidence 46889999997542 4567788899999888876543211 0 011111 222234457899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+....
T Consensus 117 ~Dl~~~~ 123 (164)
T cd04145 117 ADLEHQR 123 (164)
T ss_pred ccccccc
Confidence 9987543
No 58
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.42 E-value=3.1e-12 Score=110.82 Aligned_cols=78 Identities=21% Similarity=0.343 Sum_probs=50.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++++||||+...... .......+..++..++.+++++....... . ....+.......+.++++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~------~~~~~~~~~~~~~~~d~il~v~~~~~~~~-~-~~~~~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGL------GREREELARRVLERADLILFVVDADLRAD-E-EEEKLLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccc------hhhHHHHHHHHHHhCCEEEEEEeCCCCCC-H-HHHHHHHHHHhcCCeEEEEEEccc
Confidence 568999999999775321 11112466778888998888776544322 2 222234444456789999999999
Q ss_pred CCCCcC
Q 013508 219 LMDKGT 224 (441)
Q Consensus 219 ~~~~~~ 224 (441)
+.....
T Consensus 116 ~~~~~~ 121 (163)
T cd00880 116 LLPEEE 121 (163)
T ss_pred cCChhh
Confidence 987553
No 59
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.41 E-value=1.8e-12 Score=113.91 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=85.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++++|||||+++|++..+.+......+....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFG------------------------------------------- 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEE-------------------------------------------
Confidence 6899999999999999999988763322211111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l 197 (441)
...+.+. .....+.|+|+||.... ..+...+++.++++|++++..+..-. -..++
T Consensus 39 ---------~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04113 39 ---------SKIIRVG-GKRVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITNRTSFEALPTWL 95 (161)
T ss_pred ---------EEEEEEC-CEEEEEEEEECcchHHH-------------HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 0011121 12346889999997432 45677888999998888866443211 12233
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhcc
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 254 (441)
..++.....+.+.++|.||+|+........+............|+.+...+..++..
T Consensus 96 ~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 96 SDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred HHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 333444445789999999999975432211111111112224566666655544443
No 60
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.41 E-value=2.4e-12 Score=113.48 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=71.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++++|||||+|++++..+.+......+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~---------------------------------------------- 35 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGI---------------------------------------------- 35 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce----------------------------------------------
Confidence 6999999999999999999998863211111100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l 197 (441)
......+.+.+ ....+.|+||||.... ..+...|++.++++|++++..+... ....++
T Consensus 36 ------~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~ 95 (168)
T cd04119 36 ------DYGVKKVSVRN-KEVRVNFFDLSGHPEY-------------LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWL 95 (168)
T ss_pred ------eEEEEEEEECC-eEEEEEEEECCccHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHH
Confidence 00011111222 2357899999997331 3566778889999888876543211 012233
Q ss_pred HHHHH-hCC----CCCcEEEEeccCCCCC
Q 013508 198 KLARE-VDP----TGERTFGVLTKLDLMD 221 (441)
Q Consensus 198 ~l~~~-~~~----~~~r~i~VltK~D~~~ 221 (441)
..+.. ..+ .+.|+++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 96 KEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHhccccccCCCceEEEEEEchhccc
Confidence 22222 222 4689999999999974
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.41 E-value=2.5e-12 Score=113.06 Aligned_cols=116 Identities=19% Similarity=0.218 Sum_probs=71.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.++||||||++++++..+-+......+....
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~------------------------------------------- 38 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFK------------------------------------------- 38 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-------------------------------------------
Confidence 6899999999999999999998762221111111110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
...+.+. .....+.++|+||.... ..+...+++.+|++|++++..+. ...+...++
T Consensus 39 ---------~~~~~~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~ 94 (164)
T smart00175 39 ---------TKTIEVD-GKRVKLQIWDTAGQERF-------------RSITSSYYRGAVGALLVYDITNR-ESFENLKNW 94 (164)
T ss_pred ---------EEEEEEC-CEEEEEEEEECCChHHH-------------HHHHHHHhCCCCEEEEEEECCCH-HHHHHHHHH
Confidence 0011111 11236889999996331 35677888999999888866442 112222222
Q ss_pred HHH---hCCCCCcEEEEeccCCCCCC
Q 013508 200 ARE---VDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 200 ~~~---~~~~~~r~i~VltK~D~~~~ 222 (441)
... ....+.|+++|.||+|+...
T Consensus 95 l~~~~~~~~~~~pivvv~nK~D~~~~ 120 (164)
T smart00175 95 LKELREYADPNVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HHHHHHhCCCCCeEEEEEEchhcccc
Confidence 222 23247899999999998753
No 62
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.41 E-value=2.9e-12 Score=113.36 Aligned_cols=150 Identities=13% Similarity=0.186 Sum_probs=86.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
-+|+++|++++|||||++++.+..+.+..... +...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t-~~~~------------------------------------------- 38 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHT-IGVE------------------------------------------- 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcc-ccee-------------------------------------------
Confidence 47999999999999999999988763221111 0000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~ 196 (441)
+. ...+.+.+ ....+.++||||... ...+...|+++++++|++++..+..- .-..+
T Consensus 39 ------~~--~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~ 96 (166)
T cd04122 39 ------FG--TRIIEVNG-QKIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96 (166)
T ss_pred ------EE--EEEEEECC-EEEEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 00111211 224688999999633 24667889999999999887654221 01223
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhcc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 254 (441)
+..++.....+.+.++|.||+|+........+............|+.+.+.+..++..
T Consensus 97 ~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 97 LTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVED 154 (166)
T ss_pred HHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 3333334444678999999999975442111111111111234566666666555444
No 63
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.1e-12 Score=122.78 Aligned_cols=128 Identities=27% Similarity=0.347 Sum_probs=83.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-++||++|.||+|||||+|+|+..+. .++|..|
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~dr-----sIVSpv~----------------------------------------- 300 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDR-----SIVSPVP----------------------------------------- 300 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCc-----eEeCCCC-----------------------------------------
Confidence 558999999999999999999999988 7777666
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
|+ +.+.|...+. +++..+.|+||.|+.+... +.++..=-+-.++.+..+|.|+++|++...++ . ..
T Consensus 301 ---GT----TRDaiea~v~-~~G~~v~L~DTAGiRe~~~----~~iE~~gI~rA~k~~~~advi~~vvda~~~~t-~-sd 366 (531)
T KOG1191|consen 301 ---GT----TRDAIEAQVT-VNGVPVRLSDTAGIREESN----DGIEALGIERARKRIERADVILLVVDAEESDT-E-SD 366 (531)
T ss_pred ---Cc----chhhheeEee-cCCeEEEEEeccccccccC----ChhHHHhHHHHHHHHhhcCEEEEEeccccccc-c-cc
Confidence 21 2233333343 6778999999999988221 11221112456677888997766665422222 2 22
Q ss_pred HHHHHHhCC------------CCCcEEEEeccCCCCCCcC
Q 013508 197 MKLAREVDP------------TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 197 l~l~~~~~~------------~~~r~i~VltK~D~~~~~~ 224 (441)
+.+++.+.. ...|.|+|.||.|+..+..
T Consensus 367 ~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~ 406 (531)
T KOG1191|consen 367 LKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP 406 (531)
T ss_pred hHHHHHHHHhccceEEEeccccccceEEEechhhccCccc
Confidence 222222211 2378999999999998743
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.40 E-value=2.9e-12 Score=112.81 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=82.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++|||||||+|++++..+ +.....++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~-------------------------------------------- 36 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDS-------------------------------------------- 36 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhh--------------------------------------------
Confidence 699999999999999999998875 22111111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
+ ...+.+ ......+.++||||..+. ..+...|+...++++++++..+.. +. ...+.
T Consensus 37 -----~---~~~~~~-~~~~~~l~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T smart00173 37 -----Y---RKQIEI-DGEVCLLDILDTAGQEEF-------------SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFR 94 (164)
T ss_pred -----E---EEEEEE-CCEEEEEEEEECCCcccc-------------hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 001111 122346789999997543 356677888899888877543321 10 11111
Q ss_pred H-HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 198 K-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 198 ~-l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
. +.+.......|+++|.||+|+.+......+...........+|+.+.+.+..+++..+
T Consensus 95 ~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 95 EQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 2 2222333467999999999987543211111110111122456666666655554433
No 65
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.40 E-value=2.1e-12 Score=113.40 Aligned_cols=68 Identities=26% Similarity=0.339 Sum_probs=42.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
...+.+|||||..+. ......++..+|+++++++..+ ++. ..+.+.+++... ..+.++|+||
T Consensus 50 ~~~~~~~DtpG~~~~-------------~~~~~~~~~~ad~ii~V~d~~~-~~~~~~~~~~~~~~~~~--~~~~ilv~NK 113 (164)
T cd04171 50 GKRLGFIDVPGHEKF-------------IKNMLAGAGGIDLVLLVVAADE-GIMPQTREHLEILELLG--IKRGLVVLTK 113 (164)
T ss_pred CcEEEEEECCChHHH-------------HHHHHhhhhcCCEEEEEEECCC-CccHhHHHHHHHHHHhC--CCcEEEEEEC
Confidence 357999999997321 2445567788998888776433 221 122233333321 2489999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+...
T Consensus 114 ~Dl~~~ 119 (164)
T cd04171 114 ADLVDE 119 (164)
T ss_pred ccccCH
Confidence 999754
No 66
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.40 E-value=2.1e-12 Score=114.51 Aligned_cols=116 Identities=16% Similarity=0.272 Sum_probs=70.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.++||||||+|++++..+.+.....++..+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~------------------------------------------- 38 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFL------------------------------------------- 38 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEE-------------------------------------------
Confidence 6999999999999999999998753222111111110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH-HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~-~~l 197 (441)
...+.+.+ ....+.++|+||.... ..+...|++.++++|++++..+.. +... .+.
T Consensus 39 ---------~~~~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 95 (172)
T cd01862 39 ---------TKEVTVDD-KLVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNPKSFESLDSWR 95 (172)
T ss_pred ---------EEEEEECC-EEEEEEEEeCCChHHH-------------HhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011111 2246789999996331 356778899999988888653321 1111 111
Q ss_pred -HHHHHhC---CCCCcEEEEeccCCCCC
Q 013508 198 -KLAREVD---PTGERTFGVLTKLDLMD 221 (441)
Q Consensus 198 -~l~~~~~---~~~~r~i~VltK~D~~~ 221 (441)
.+..... +.+.|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 96 DEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHhcCccCCCCceEEEEEECccccc
Confidence 1233333 34789999999999985
No 67
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.40 E-value=5.1e-12 Score=118.86 Aligned_cols=129 Identities=20% Similarity=0.258 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+|+|+|.+|+|||||+|+|+|....+++.. .+|+.+....
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~------------------------------------ 73 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVS------------------------------------ 73 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEE------------------------------------
Confidence 567999999999999999999999886554322 2333332110
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCcc-ccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQ-DIA 192 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iil~v~~a~~-~~~ 192 (441)
. ..+...+++|||||+...... ......+.+.+.+|+.. .+. |++|...+. ...
T Consensus 74 ------------------~-~~~g~~i~vIDTPGl~~~~~~---~~~~~~~~~~I~~~l~~~~idv-IL~V~rlD~~r~~ 130 (249)
T cd01853 74 ------------------G-TVDGFKLNIIDTPGLLESVMD---QRVNRKILSSIKRYLKKKTPDV-VLYVDRLDMYRRD 130 (249)
T ss_pred ------------------E-EECCeEEEEEECCCcCcchhh---HHHHHHHHHHHHHHHhccCCCE-EEEEEcCCCCCCC
Confidence 1 123457999999999864211 11233445667778863 554 444543332 221
Q ss_pred c--HHHHHHHHHh-CC-CCCcEEEEeccCCCCCCcC
Q 013508 193 T--SDAMKLAREV-DP-TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 193 ~--~~~l~l~~~~-~~-~~~r~i~VltK~D~~~~~~ 224 (441)
. ...++.++.. .. .-.++++|+||+|...+..
T Consensus 131 ~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 131 YLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred HHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 2 2233333332 11 1257999999999986654
No 68
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.40 E-value=2.5e-12 Score=112.99 Aligned_cols=70 Identities=23% Similarity=0.270 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHHHHHHh-CCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREV-DPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~l~~~~-~~~~~r~i~VltK 216 (441)
..+.|+||||.... ..+...|++++++++++++..+.. +.. ..+...+... ...+.|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 115 (163)
T cd04136 49 CMLEILDTAGTEQF-------------TAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNK 115 (163)
T ss_pred EEEEEEECCCcccc-------------chHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 46789999997542 356677889999888887654321 111 1122222222 2346899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 116 ~Dl~~~ 121 (163)
T cd04136 116 CDLEDE 121 (163)
T ss_pred cccccc
Confidence 998754
No 69
>COG2262 HflX GTPases [General function prediction only]
Probab=99.40 E-value=7.3e-12 Score=121.66 Aligned_cols=132 Identities=21% Similarity=0.318 Sum_probs=95.5
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
.....|.|++||-.|||||||+|+|+|...+-.+.-+.|-.|+.=
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR----------------------------------- 232 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTR----------------------------------- 232 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCcee-----------------------------------
Confidence 446899999999999999999999999887545555555555320
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
.+.-++...+.+-||-|+++. -|..+.+..+... +-..++|.++.+|+.++.++..
T Consensus 233 -------------------~~~l~~g~~vlLtDTVGFI~~----LP~~LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~ 288 (411)
T COG2262 233 -------------------RIELGDGRKVLLTDTVGFIRD----LPHPLVEAFKSTL-EEVKEADLLLHVVDASDPEILE 288 (411)
T ss_pred -------------------EEEeCCCceEEEecCccCccc----CChHHHHHHHHHH-HHhhcCCEEEEEeecCChhHHH
Confidence 133344668999999999984 4677776664443 3455689888877666554322
Q ss_pred --HHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 194 --~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
+....++.++.-...|+|.|+||+|++....
T Consensus 289 ~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 289 KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 2345678888777899999999999987653
No 70
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=4.3e-12 Score=137.00 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCC-cccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..++|+++|.+|+|||||+|+|+|.++. +.....+|+.+.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~--------------------------------------- 489 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPV--------------------------------------- 489 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcc---------------------------------------
Confidence 4689999999999999999999998751 222222222221
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHH-HHHhhcCCCeEEEEeccCccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
...+ ..+..++.||||||+.+.... ....+....+ ...+++.+|.++++++ +.... +.
T Consensus 490 ---------------~~~~-~~~~~~~~liDTaG~~~~~~~---~~~~e~~~~~r~~~~i~~advvilViD-at~~~-s~ 548 (712)
T PRK09518 490 ---------------DEIV-EIDGEDWLFIDTAGIKRRQHK---LTGAEYYSSLRTQAAIERSELALFLFD-ASQPI-SE 548 (712)
T ss_pred ---------------eeEE-EECCCEEEEEECCCcccCccc---chhHHHHHHHHHHHHhhcCCEEEEEEE-CCCCC-CH
Confidence 0011 113446889999999753211 1111222222 3466888998887765 44444 33
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
....++..+...+.++|+|+||+|+.+.
T Consensus 549 ~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 549 QDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 3445666666678999999999999864
No 71
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.39 E-value=1.9e-12 Score=112.44 Aligned_cols=115 Identities=22% Similarity=0.263 Sum_probs=72.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|.++||||||+|++++..+.+......+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~------------------------------------------- 37 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDF------------------------------------------- 37 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeee-------------------------------------------
Confidence 3699999999999999999999886332111111000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH---
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--- 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~--- 195 (441)
....+.+. ....++.++|+||.... ..+...++++.+++|++++....+ ..+.
T Consensus 38 ---------~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~ 93 (159)
T cd00154 38 ---------KSKTIEID-GKTVKLQIWDTAGQERF-------------RSITPSYYRGAHGAILVYDITNRE-SFENLDK 93 (159)
T ss_pred ---------EEEEEEEC-CEEEEEEEEecCChHHH-------------HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHH
Confidence 01111111 12347889999997432 457788899999888888664421 1112
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
++..+......+.++++|+||+|+.
T Consensus 94 ~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 94 WLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhCCCCCcEEEEEEccccc
Confidence 2333333333468999999999997
No 72
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=2.8e-12 Score=116.92 Aligned_cols=120 Identities=24% Similarity=0.288 Sum_probs=69.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|.+|+|||||+|+|+|..+ |......+. ...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~-~~~~~~~~~-~~~----------------------------------------- 38 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGH-EEEGAAPTG-VVE----------------------------------------- 38 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCC-CCCCccccC-ccc-----------------------------------------
Confidence 4699999999999999999999764 221111111 000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHh-hcCCCeEEEEeccCccccccHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY-VEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~y-i~~~~~iil~v~~a~~~~~~~~~l 197 (441)
.+.... .+..+...+++++||||+.... .... ...+.. +...|.++++ .+ .++ .+...
T Consensus 39 ------~t~~~~--~~~~~~~~~l~l~DtpG~~~~~-----~~~~----~~l~~~~~~~~d~~l~v-~~--~~~-~~~d~ 97 (197)
T cd04104 39 ------TTMKRT--PYPHPKFPNVTLWDLPGIGSTA-----FPPD----DYLEEMKFSEYDFFIII-SS--TRF-SSNDV 97 (197)
T ss_pred ------cccCce--eeecCCCCCceEEeCCCCCccc-----CCHH----HHHHHhCccCcCEEEEE-eC--CCC-CHHHH
Confidence 000000 1222335689999999997532 1111 222221 4456765554 33 234 33334
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+++.+...+.++++|+||+|+..+
T Consensus 98 ~~~~~l~~~~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 98 KLAKAIQCMGKKFYFVRTKVDRDLS 122 (197)
T ss_pred HHHHHHHHhCCCEEEEEecccchhh
Confidence 4555555568899999999999643
No 73
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.39 E-value=3.5e-12 Score=111.92 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=46.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHH---hCCCCCcEEEE
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLARE---VDPTGERTFGV 213 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~---~~~~~~r~i~V 213 (441)
...+.++||||..+. ..+...|+.+++++|++++..+.. +. ....+..+.. +...+.|+++|
T Consensus 44 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 110 (162)
T cd04157 44 NLSFTAFDMSGQGKY-------------RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFF 110 (162)
T ss_pred CEEEEEEECCCCHhh-------------HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEE
Confidence 457899999997542 467778899999988887654321 10 1112222211 12347899999
Q ss_pred eccCCCCCC
Q 013508 214 LTKLDLMDK 222 (441)
Q Consensus 214 ltK~D~~~~ 222 (441)
+||+|+...
T Consensus 111 ~NK~Dl~~~ 119 (162)
T cd04157 111 ANKMDLPDA 119 (162)
T ss_pred EeCccccCC
Confidence 999998754
No 74
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.39 E-value=1.2e-12 Score=116.42 Aligned_cols=122 Identities=21% Similarity=0.292 Sum_probs=69.7
Q ss_pred EECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCC
Q 013508 43 VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKT 122 (441)
Q Consensus 43 VvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~ 122 (441)
++|++|||||||+|+|+|.++.......+|..|.. +
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~------------------------------------------~-- 36 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNL------------------------------------------G-- 36 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcc------------------------------------------e--
Confidence 58999999999999999987522222233333321 0
Q ss_pred CCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-----cccHH--
Q 013508 123 KQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-----IATSD-- 195 (441)
Q Consensus 123 ~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-----~~~~~-- 195 (441)
.+...+..++.|+||||+...... .+.+. .....++..++.++++++..+.. ....+
T Consensus 37 ----------~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~----~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~ 100 (176)
T cd01881 37 ----------VVEVPDGARIQVADIPGLIEGASE--GRGLG----NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYE 100 (176)
T ss_pred ----------EEEcCCCCeEEEEeccccchhhhc--CCCcc----HHHHHHHhccCEEEEEEeccCCccccccCHHHHHH
Confidence 011121457899999998653211 11111 12345677789888887654431 11111
Q ss_pred -HHHHHHHhCC-------CCCcEEEEeccCCCCCCcC
Q 013508 196 -AMKLAREVDP-------TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 196 -~l~l~~~~~~-------~~~r~i~VltK~D~~~~~~ 224 (441)
....+..... .+.|+++|+||+|+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 137 (176)
T cd01881 101 ILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE 137 (176)
T ss_pred HHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH
Confidence 1111221121 3689999999999986543
No 75
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.38 E-value=2.2e-12 Score=139.31 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=97.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.+|.|+++|.+|+|||||+|+|+|... .++...|.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-----~iv~~~pG---------------------------------------- 308 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRRE-----AVVEDTPG---------------------------------------- 308 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCCC----------------------------------------
Confidence 458899999999999999999999764 22222221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
++.+.+..... .+...+.+|||||+... ...+...+...+..++..+|++|++++. ..++.. ..
T Consensus 309 --------vT~d~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~aD~iL~VvDa-~~~~~~-~d 372 (712)
T PRK09518 309 --------VTRDRVSYDAE-WAGTDFKLVDTGGWEAD-----VEGIDSAIASQAQIAVSLADAVVFVVDG-QVGLTS-TD 372 (712)
T ss_pred --------eeEEEEEEEEE-ECCEEEEEEeCCCcCCC-----CccHHHHHHHHHHHHHHhCCEEEEEEEC-CCCCCH-HH
Confidence 01111111111 12347899999998642 2345556677788899999988887764 433322 22
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCC-eEEEEeCChhhhccCCcHHHHH
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
..++..+...+.|+|+|+||+|+........+.. .++.+ .+.++.....++.+.++.+...
T Consensus 373 ~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~-----~lg~~~~~~iSA~~g~GI~eLl~~i~~~ 434 (712)
T PRK09518 373 ERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFW-----KLGLGEPYPISAMHGRGVGDLLDEALDS 434 (712)
T ss_pred HHHHHHHHhcCCCEEEEEECcccccchhhHHHHH-----HcCCCCeEEEECCCCCCchHHHHHHHHh
Confidence 3455666667899999999999875432222221 12221 2345555555555554444433
No 76
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.38 E-value=9.4e-12 Score=118.85 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=76.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
.+..+|+|+|.+|+||||++|+|+|.+...++. ..+|..++...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~----------------------------------- 80 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVS----------------------------------- 80 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEE-----------------------------------
Confidence 467899999999999999999999987632211 12222221100
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEec-cCc-cc
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAIS-PAN-QD 190 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~-~a~-~~ 190 (441)
...+...+++|||||+.+. ....+...+.++.|+. .+|+++++.. +.. .+
T Consensus 81 --------------------~~~~G~~l~VIDTPGL~d~------~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~ 134 (313)
T TIGR00991 81 --------------------RTRAGFTLNIIDTPGLIEG------GYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVD 134 (313)
T ss_pred --------------------EEECCeEEEEEECCCCCch------HHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCC
Confidence 1113458999999999863 2233444566777765 3666655532 111 11
Q ss_pred cccHHHHHHHHHhC--CCCCcEEEEeccCCCCCCc
Q 013508 191 IATSDAMKLAREVD--PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 191 ~~~~~~l~l~~~~~--~~~~r~i~VltK~D~~~~~ 223 (441)
-.....++.++.+- ..-.++|+|+|+.|..+++
T Consensus 135 ~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 135 TLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 11233444444432 2246899999999988643
No 77
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.38 E-value=6.5e-12 Score=114.61 Aligned_cols=156 Identities=16% Similarity=0.141 Sum_probs=84.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++|+|||||++++++.+| +......+....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~------------------------------------------- 37 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRL------------------------------------------- 37 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCcccccc-------------------------------------------
Confidence 699999999999999999999876 332211111110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH---
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~--- 196 (441)
.. ..+.+.+ ....+.|+||||...... ............+++.+|++|++++..+.+- -...
T Consensus 38 ------~~--~~i~~~~-~~~~l~i~Dt~G~~~~~~-----~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S-~~~~~~~ 102 (198)
T cd04142 38 ------YR--PAVVLSG-RVYDLHILDVPNMQRYPG-----TAGQEWMDPRFRGLRNSRAFILVYDICSPDS-FHYVKLL 102 (198)
T ss_pred ------ce--eEEEECC-EEEEEEEEeCCCcccCCc-----cchhHHHHHHHhhhccCCEEEEEEECCCHHH-HHHHHHH
Confidence 00 0011111 224678999999865321 1111112345567888999888876544211 1111
Q ss_pred HHHHHHh---CCCCCcEEEEeccCCCCCCcCcHHHHHcCc-ccccCCCeEEEEeCChhhhcc
Q 013508 197 MKLAREV---DPTGERTFGVLTKLDLMDKGTNALDVLEGR-SYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 197 l~l~~~~---~~~~~r~i~VltK~D~~~~~~~~~~~l~~~-~~~l~~g~~~v~~~s~~~~~~ 254 (441)
.+.+... ...+.|+++|.||+|+........+.+... ......+|+.+.+.++.+++.
T Consensus 103 ~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~ 164 (198)
T cd04142 103 RQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILL 164 (198)
T ss_pred HHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHH
Confidence 1112222 245789999999999965422111111100 011234677776666544443
No 78
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.38 E-value=6.1e-12 Score=110.16 Aligned_cols=101 Identities=12% Similarity=0.186 Sum_probs=56.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHH-HHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM-KLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l-~l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||.... ..+...|++..++++++++..+.. +.. ..+. .+.+.....+.|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 115 (162)
T cd04138 49 CLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNK 115 (162)
T ss_pred EEEEEEECCCCcch-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 35778999997432 467778999999888877543321 111 1111 2233333457899999999
Q ss_pred CCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhcc
Q 013508 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 254 (441)
+|+........+... ........|+.+.+.+..++++
T Consensus 116 ~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 116 CDLAARTVSSRQGQD-LAKSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred cccccceecHHHHHH-HHHHhCCeEEEecCCCCCCHHH
Confidence 998764322111111 1112233455665555544443
No 79
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.38 E-value=5.2e-12 Score=110.92 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=83.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+|+|||||++++++..+ +.+....+....
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 37 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSY------------------------------------------- 37 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhE-------------------------------------------
Confidence 699999999999999999998775 322221111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
-...........+.++||||.... ..+...+++..++++++++..+.. +. ...+.
T Consensus 38 ----------~~~~~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 94 (164)
T cd04139 38 ----------RKKVVLDGEDVQLNILDTAGQEDY-------------AAIRDNYHRSGEGFLLVFSITDMESFTATAEFR 94 (164)
T ss_pred ----------EEEEEECCEEEEEEEEECCChhhh-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000011112346889999997542 356667888899888887543321 10 11222
Q ss_pred H-HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 198 K-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 198 ~-l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
. +.+.....+.|.++|+||+|+....................+++.+......++.+.+
T Consensus 95 ~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 95 EQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred HHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 2 3332234578999999999997632211111111111223456666665555544433
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.37 E-value=4.3e-12 Score=114.18 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. ......++..+|++++++++.. .. ......++..+...+.++++|+||+|
T Consensus 61 ~~~~~liDtpG~~~~-------------~~~~~~~~~~~d~~i~v~d~~~-~~-~~~~~~~~~~~~~~~~~i~iv~nK~D 125 (189)
T cd00881 61 DRRVNFIDTPGHEDF-------------SSEVIRGLSVSDGAILVVDANE-GV-QPQTREHLRIAREGGLPIIVAINKID 125 (189)
T ss_pred CEEEEEEeCCCcHHH-------------HHHHHHHHHhcCEEEEEEECCC-CC-cHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 458999999997542 3557777888998888776533 22 22222333344446789999999999
Q ss_pred CCCC
Q 013508 219 LMDK 222 (441)
Q Consensus 219 ~~~~ 222 (441)
+..+
T Consensus 126 ~~~~ 129 (189)
T cd00881 126 RVGE 129 (189)
T ss_pred Ccch
Confidence 9863
No 81
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.37 E-value=8.3e-12 Score=112.46 Aligned_cols=115 Identities=19% Similarity=0.335 Sum_probs=72.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+|||||||++++++..+... .|+.
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~~~-------~~t~------------------------------------------ 35 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFVNT-------VPTK------------------------------------------ 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCc-------CCcc------------------------------------------
Confidence 699999999999999999998765211 1210
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH--
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-- 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l-- 197 (441)
++....+.+.+.......+.++||||.... ..+...|++.++++|++++..+.+. -....
T Consensus 36 ----~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~~-~~~~~~~ 97 (183)
T cd04152 36 ----GFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------------RPLWKSYTRCTDGIVFVVDSVDVER-MEEAKTE 97 (183)
T ss_pred ----ccceeEEEeeccCCCceEEEEEECCCcHhH-------------HHHHHHHhccCCEEEEEEECCCHHH-HHHHHHH
Confidence 011111122222223457899999996331 4677888999998888886544211 11111
Q ss_pred --HHHHHhCCCCCcEEEEeccCCCCC
Q 013508 198 --KLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 198 --~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
++.+.....+.|+++|+||+|+..
T Consensus 98 ~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 98 LHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHhhhhcCCCcEEEEEECcCccc
Confidence 122322335789999999999864
No 82
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.37 E-value=6.7e-12 Score=110.50 Aligned_cols=72 Identities=29% Similarity=0.319 Sum_probs=47.0
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HHHHHHHHHhCCCCCcEEEEec
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~~l~l~~~~~~~~~r~i~Vlt 215 (441)
....+.++||||... ...+...++..+|+++++++..+..... ..+++.+.... .+.+.++|.|
T Consensus 50 ~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~n 115 (164)
T cd04101 50 NTVELFIFDSAGQEL-------------YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGN 115 (164)
T ss_pred CEEEEEEEECCCHHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 345789999999632 2467788999999988887654321111 22233333333 3589999999
Q ss_pred cCCCCCCc
Q 013508 216 KLDLMDKG 223 (441)
Q Consensus 216 K~D~~~~~ 223 (441)
|+|+.+..
T Consensus 116 K~Dl~~~~ 123 (164)
T cd04101 116 KMDLADKA 123 (164)
T ss_pred Cccccccc
Confidence 99987543
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.37 E-value=6.4e-12 Score=110.44 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=71.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++++|||||+|++++.++.+.....+.. .
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~-------------------------------------------- 37 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGA-A-------------------------------------------- 37 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce-e--------------------------------------------
Confidence 6999999999999999999999863311111100 0
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
+. ...+.+. .....+.++|+||... ...+...|++..+++|++++..+.+ +. ...++
T Consensus 38 -----~~--~~~v~~~-~~~~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 96 (163)
T cd01860 38 -----FL--TQTVNLD-DTTVKFEIWDTAGQER-------------YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWV 96 (163)
T ss_pred -----EE--EEEEEEC-CEEEEEEEEeCCchHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHH
Confidence 00 0011111 1234678999999532 1455667888899988888665432 11 11222
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++.....+.+.++|.||+|+...
T Consensus 97 ~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 97 KELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred HHHHHhCCCCCeEEEEEECcccccc
Confidence 2233333345789999999998743
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=5.4e-12 Score=111.39 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|++++|||||++++.+..+.+.... |...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~--t~~~------------------------------------------ 38 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN--TIGV------------------------------------------ 38 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC--ccce------------------------------------------
Confidence 46899999999999999999998765221111 1000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~ 195 (441)
......+.+. .....+.|+||||... ...+...+++.+|+++++++..+.. +. ...
T Consensus 39 --------~~~~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~ 96 (165)
T cd01864 39 --------DFTMKTLEIE-GKRVKLQIWDTAGQER-------------FRTITQSYYRSANGAIIAYDITRRSSFESVPH 96 (165)
T ss_pred --------EEEEEEEEEC-CEEEEEEEEECCChHH-------------HHHHHHHHhccCCEEEEEEECcCHHHHHhHHH
Confidence 0000011111 1224789999999532 2456788889999988887664431 11 123
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++..+....+.+.|.++|.||+|+....
T Consensus 97 ~~~~i~~~~~~~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 97 WIEEVEKYGASNVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHHHHhCCCCCcEEEEEECccccccc
Confidence 4444444445578899999999997553
No 85
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.36 E-value=6.2e-12 Score=110.83 Aligned_cols=71 Identities=23% Similarity=0.266 Sum_probs=46.0
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHH-HHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMK-LAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~-l~~~~~~~~~r~i~Vlt 215 (441)
...+.|+||||.... ..+...|++..+++|++++..+.. +.. ..+.. +.+.....+.|+++|.|
T Consensus 48 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 114 (164)
T cd04175 48 QCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114 (164)
T ss_pred EEEEEEEECCCcccc-------------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 346789999997543 466777899999988887643321 111 11222 22222345689999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+...
T Consensus 115 K~Dl~~~ 121 (164)
T cd04175 115 KCDLEDE 121 (164)
T ss_pred CCcchhc
Confidence 9999754
No 86
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=6.8e-12 Score=111.06 Aligned_cols=121 Identities=17% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.+++|+++|.+++|||||++++++..+.|......+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 46 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI--------------------------------------- 46 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEE---------------------------------------
Confidence 46899999999999999999999766533211111110100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
-.+.+. .....+.++|+||.... ..+...|+..+++++++++..+.+. ...
T Consensus 47 -------------~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (169)
T cd04114 47 -------------KTVEIK-GEKIKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 99 (169)
T ss_pred -------------EEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 001111 11235789999996432 3556778899998888876543211 012
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..++.....+.+.++|.||+|+..+.
T Consensus 100 ~~~~~l~~~~~~~~~~i~v~NK~D~~~~~ 128 (169)
T cd04114 100 EWLREIEQYANNKVITILVGNKIDLAERR 128 (169)
T ss_pred HHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 33334455555678899999999987543
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.36 E-value=4.7e-12 Score=113.23 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=46.3
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....+.||||||..+. ..++..|+..+|++|++++..+ .. ....+.....+...+.+.++|+||+
T Consensus 65 ~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~-~~-~~~~~~~~~~~~~~~~~iiiv~NK~ 129 (179)
T cd01890 65 QEYLLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDATQ-GV-EAQTLANFYLALENNLEIIPVINKI 129 (179)
T ss_pred CcEEEEEEECCCChhh-------------HHHHHHHHHhcCeEEEEEECCC-Cc-cHhhHHHHHHHHHcCCCEEEEEECC
Confidence 3456889999998542 3567788889999888876543 22 1122222223333578899999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+.+
T Consensus 130 Dl~~ 133 (179)
T cd01890 130 DLPS 133 (179)
T ss_pred CCCc
Confidence 9864
No 88
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.36 E-value=1.2e-11 Score=108.42 Aligned_cols=111 Identities=20% Similarity=0.337 Sum_probs=69.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+++|||||++++++..+. . ..|+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~------~~~t~------------------------------------------ 31 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-T------TIPTV------------------------------------------ 31 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-c------ccCcc------------------------------------------
Confidence 5899999999999999999998751 1 11210
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
+ +... . +..+....+.++||||.... ..+...|+..++++|++++..+.. .-......
T Consensus 32 ~----~~~~--~--~~~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~iv~v~D~~~~~-~~~~~~~~ 89 (160)
T cd04156 32 G----FNVE--M--LQLEKHLSLTVWDVGGQEKM-------------RTVWKCYLENTDGLVYVVDSSDEA-RLDESQKE 89 (160)
T ss_pred C----cceE--E--EEeCCceEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCcHH-HHHHHHHH
Confidence 0 0000 1 22223457999999997432 456677888999888887654422 11122221
Q ss_pred HHHh----CCCCCcEEEEeccCCCCC
Q 013508 200 AREV----DPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 200 ~~~~----~~~~~r~i~VltK~D~~~ 221 (441)
..++ ...+.|+++|+||+|+..
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 90 LKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHhchhhcCCCEEEEEECccccc
Confidence 2221 124789999999999864
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=5.6e-12 Score=110.70 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=44.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc-HHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.|+||||... ...+...|++.++.++++++..+.+. .. ..++..++.. ..+.|+++|.||+
T Consensus 51 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECh
Confidence 4689999999532 24667788999998888775443221 00 1122222222 2368999999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+....
T Consensus 117 Dl~~~~ 122 (162)
T cd04106 117 DLLDQA 122 (162)
T ss_pred hccccc
Confidence 997643
No 90
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.35 E-value=8.7e-12 Score=109.16 Aligned_cols=117 Identities=18% Similarity=0.243 Sum_probs=71.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+++|||||+|++++..+-+..... +.....
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~-~~~~~~------------------------------------------ 38 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHEST-TQASFF------------------------------------------ 38 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCc-cceeEE------------------------------------------
Confidence 6899999999999999999988763221111 111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~~l 197 (441)
... +.+.+ ....+.++|+||.... ..+...++.+.++++++++..+.+... ..++
T Consensus 39 -------~~~--~~~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 95 (162)
T cd04123 39 -------QKT--VNIGG-KRIDLAIWDTAGQERY-------------HALGPIYYRDADGAILVYDITDADSFQKVKKWI 95 (162)
T ss_pred -------EEE--EEECC-EEEEEEEEECCchHHH-------------HHhhHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 000 01111 1236889999995321 355667788899888887654432111 1222
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+.++...+.+.++++|+||+|+...
T Consensus 96 ~~i~~~~~~~~piiiv~nK~D~~~~ 120 (162)
T cd04123 96 KELKQMRGNNISLVIVGNKIDLERQ 120 (162)
T ss_pred HHHHHhCCCCCeEEEEEECcccccc
Confidence 2333444447899999999998754
No 91
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.34 E-value=1.4e-11 Score=108.28 Aligned_cols=104 Identities=13% Similarity=0.211 Sum_probs=57.2
Q ss_pred EEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 144 LIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 144 lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+|||||..... . ...+.+ ..++..+|+++++++..+.+..... .+.. +. .+.+.++|+||+|+.+..
T Consensus 41 ~iDtpG~~~~~-----~---~~~~~~-~~~~~~ad~il~v~d~~~~~s~~~~--~~~~-~~-~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 41 DIDTPGEYFSH-----P---RWYHAL-ITTLQDVDMLIYVHGANDPESRLPA--GLLD-IG-VSKRQIAVISKTDMPDAD 107 (158)
T ss_pred cccCCccccCC-----H---HHHHHH-HHHHhcCCEEEEEEeCCCcccccCH--HHHh-cc-CCCCeEEEEEccccCccc
Confidence 69999986531 1 112233 3457789988887765433211111 1222 22 357899999999985422
Q ss_pred Cc-HHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 224 TN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 224 ~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
.+ +.+.+. ......+++.+..+++.+++..+..+...
T Consensus 108 ~~~~~~~~~--~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~ 145 (158)
T PRK15467 108 VAATRKLLL--ETGFEEPIFELNSHDPQSVQQLVDYLASL 145 (158)
T ss_pred HHHHHHHHH--HcCCCCCEEEEECCCccCHHHHHHHHHHh
Confidence 11 112221 12222467788888877776655554433
No 92
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.34 E-value=7.6e-12 Score=115.75 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=85.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|++|+|||||++++++..| +.... |+.
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~-----~T~------------------------------------------ 33 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF-GKSYK-----QTI------------------------------------------ 33 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC-CCCCC-----Cce------------------------------------------
Confidence 689999999999999999998875 22211 110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l 197 (441)
++......+.+.+.....+.|+||||.... ..+...|+..+|++|++++..+... . ...+.
T Consensus 34 ----~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------------~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~ 96 (215)
T cd04109 34 ----GLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------------GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWY 96 (215)
T ss_pred ----eEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000000111122222357889999996331 4677888999999998886544311 1 11233
Q ss_pred HHHHHhCC---CCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 198 KLAREVDP---TGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 198 ~l~~~~~~---~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
..+..... .+.++++|.||+|+........+.........+.+++.+.+.++.+++..+..+
T Consensus 97 ~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l 161 (215)
T cd04109 97 SMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQL 161 (215)
T ss_pred HHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 33333322 245789999999997433211111111111122346666666655555444433
No 93
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.34 E-value=8.5e-12 Score=109.63 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=49.1
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCC---eEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~---~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
.++++||||+..... +.+..+....++..|+...+ .+++++ +..... .....++.+.+...+.++++|+||+
T Consensus 46 ~~~~~D~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~~~~-~~~~~~~~~~l~~~~~~vi~v~nK~ 120 (170)
T cd01876 46 KFRLVDLPGYGYAKV---SKEVKEKWGKLIEEYLENRENLKGVVLLI-DSRHGP-TEIDLEMLDWLEELGIPFLVVLTKA 120 (170)
T ss_pred eEEEecCCCcccccc---CHHHHHHHHHHHHHHHHhChhhhEEEEEE-EcCcCC-CHhHHHHHHHHHHcCCCEEEEEEch
Confidence 899999999866422 33344555677777877543 344443 333322 2333344555555678999999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|++..+
T Consensus 121 D~~~~~ 126 (170)
T cd01876 121 DKLKKS 126 (170)
T ss_pred hcCChH
Confidence 997654
No 94
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.33 E-value=1.2e-11 Score=111.44 Aligned_cols=114 Identities=17% Similarity=0.271 Sum_probs=72.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-++|+++|.+|||||||+++++|..+- . ..+|..|+.
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~--~~~t~~~~~--------------------------------------- 53 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-Q--HQPTQHPTS--------------------------------------- 53 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCc-c--cCCccccce---------------------------------------
Confidence 4578999999999999999999997651 0 112222211
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~~ 195 (441)
..+.+ +...+.++||||.... +.+...|+.+++++|++++.++.+ +....
T Consensus 54 -------------~~~~~---~~~~~~~~D~~G~~~~-------------~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~ 104 (184)
T smart00178 54 -------------EELAI---GNIKFTTFDLGGHQQA-------------RRLWKDYFPEVNGIVYLVDAYDKERFAESK 104 (184)
T ss_pred -------------EEEEE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCcHHHHHHHH
Confidence 00111 2357899999997542 467788999999999988765432 11111
Q ss_pred -HH-HHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 -AM-KLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 -~l-~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.+ ++++...-.+.|+++|+||+|+..
T Consensus 105 ~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 105 RELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 11 122211124789999999999853
No 95
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.33 E-value=1.5e-11 Score=112.46 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHHHHHH-h---CCCCCcEEE
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLARE-V---DPTGERTFG 212 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~l~~~-~---~~~~~r~i~ 212 (441)
...+.|+||||.... ..+...|+++++++|++++..+.. +.. ..+...+.. + .....|+++
T Consensus 49 ~~~l~l~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piil 115 (201)
T cd04107 49 VVRLQLWDIAGQERF-------------GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLL 115 (201)
T ss_pred EEEEEEEECCCchhh-------------hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEE
Confidence 346899999997332 467788999999998888654321 110 111111111 1 124679999
Q ss_pred EeccCCCCCCcC-cHHHHHcCcccccC-CCeEEEEeCChhhhccCCcHHH
Q 013508 213 VLTKLDLMDKGT-NALDVLEGRSYRLQ-HPWVGIVNRSQADINRNIDMIV 260 (441)
Q Consensus 213 VltK~D~~~~~~-~~~~~l~~~~~~l~-~g~~~v~~~s~~~~~~~~~~~~ 260 (441)
|.||.|+.+... ...++ .......+ .+|+.+...+..++...+.++.
T Consensus 116 v~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~ 164 (201)
T cd04107 116 LANKCDLKKRLAKDGEQM-DQFCKENGFIGWFETSAKEGINIEEAMRFLV 164 (201)
T ss_pred EEECCCcccccccCHHHH-HHHHHHcCCceEEEEeCCCCCCHHHHHHHHH
Confidence 999999974221 11111 10011112 3466666665555554444443
No 96
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.33 E-value=8.9e-12 Score=111.62 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=56.4
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhC-CCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVD-PTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~-~~~~r~i~VltK 216 (441)
..+.|+||||... ...+...|+++++++|++++..+..- . ...++..+.... ..+.++++|.||
T Consensus 63 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 129 (180)
T cd04127 63 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNK 129 (180)
T ss_pred EEEEEEeCCChHH-------------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeC
Confidence 4678999999532 25677889999999888876543210 0 111222222221 235789999999
Q ss_pred CCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
+|+.+......+.........+..|+.+.+.+..+++..+
T Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~ 169 (180)
T cd04127 130 ADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAV 169 (180)
T ss_pred ccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9997543211111111111123346666655554444433
No 97
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.33 E-value=1.7e-11 Score=106.58 Aligned_cols=113 Identities=23% Similarity=0.292 Sum_probs=70.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|++|||||||+|+|.|.++. ... .+|...
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~-~~~-~~t~~~-------------------------------------------- 34 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS-EDT-IPTVGF-------------------------------------------- 34 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC-cCc-cCCCCc--------------------------------------------
Confidence 4899999999999999999998762 111 111100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH-
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK- 198 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~- 198 (441)
. ... +.. +...+.++||||.... +.+...|+..+++++++++....+. ......
T Consensus 35 ------~--~~~--~~~-~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~ 89 (159)
T cd04159 35 ------N--MRK--VTK-GNVTLKVWDLGGQPRF-------------RSMWERYCRGVNAIVYVVDAADRTA-LEAAKNE 89 (159)
T ss_pred ------c--eEE--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCCHHH-HHHHHHH
Confidence 0 001 111 2257899999997432 4667788899998888775433211 111111
Q ss_pred ---HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 199 ---LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 199 ---l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+.......+.|.++|+||.|+.+..
T Consensus 90 ~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 90 LHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred HHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 1111122467999999999987543
No 98
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=1.1e-11 Score=108.76 Aligned_cols=71 Identities=17% Similarity=0.329 Sum_probs=46.6
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc--cHHHHHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA--TSDAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~--~~~~l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.++||||.... +.+...|+..++++|++++..+.. +. ......+.+.....+.|+++|+|
T Consensus 42 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd04151 42 NLKFQVWDLGGQTSI-------------RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFAN 108 (158)
T ss_pred CEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEe
Confidence 357899999998542 467788999999988888654321 10 11112222322224689999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+.+.
T Consensus 109 K~Dl~~~ 115 (158)
T cd04151 109 KQDMPGA 115 (158)
T ss_pred CCCCCCC
Confidence 9998754
No 99
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.32 E-value=1.3e-11 Score=111.83 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=60.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHHhC---CCCCcEEEEe
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD---PTGERTFGVL 214 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~---~~~~r~i~Vl 214 (441)
..+.|+||||.... ..+...|++.++++|++++..+.. +. ...++..+.... +.+.|+|+|.
T Consensus 47 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 47 CMLEVLDTAGQEEY-------------TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 35889999996432 356778899999888887653321 11 122333333332 2467999999
Q ss_pred ccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
||+|+.....................|+.+.+.+..+++..+..+...
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 999986433211111110111122346666655555555555444433
No 100
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=1.8e-11 Score=112.93 Aligned_cols=159 Identities=21% Similarity=0.284 Sum_probs=89.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|++++|||||++++++..+-+... |+.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~------~ti----------------------------------------- 35 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD------PTV----------------------------------------- 35 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC------cee-----------------------------------------
Confidence 479999999999999999999987622211 110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~ 196 (441)
| ..+.. -.+.+.......+.++||||.... ..+...|+++++++|++++..+... . ...+
T Consensus 36 -~--~d~~~--~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~ 97 (211)
T cd04111 36 -G--VDFFS--RLIEIEPGVRIKLQLWDTAGQERF-------------RSITRSYYRNSVGVLLVFDITNRESFEHVHDW 97 (211)
T ss_pred -c--eEEEE--EEEEECCCCEEEEEEEeCCcchhH-------------HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHH
Confidence 0 00000 001111112246889999996432 4667889999998888876544211 0 1122
Q ss_pred HHHH-HHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 197 MKLA-REVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 197 l~l~-~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
+..+ +...+...+.++|.||+|+.+......+.........+.+|+.+...+..++++.+..+...
T Consensus 98 ~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 164 (211)
T cd04111 98 LEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQE 164 (211)
T ss_pred HHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 2222 22334456778999999987643221111111111233567777666666666555554443
No 101
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.32 E-value=1.1e-11 Score=109.13 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=70.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+++|||||++.+.+..+.+.......
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~----------------------------------------------- 35 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE----------------------------------------------- 35 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-----------------------------------------------
Confidence 699999999999999999998776322111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
.+.. ..+.+.+ ....+.|+||||.... ..+...|+.+++++|++++..+.. +. ...+.
T Consensus 36 ----~~~~--~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~ 95 (163)
T cd04176 36 ----DFYR--KEIEVDS-SPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMR 95 (163)
T ss_pred ----heEE--EEEEECC-EEEEEEEEECCCcccc-------------cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHH
Confidence 0000 0111211 1235789999997443 356667888999988877554421 11 11222
Q ss_pred HHHHHh-CCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREV-DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~-~~~~~r~i~VltK~D~~~~ 222 (441)
..+... ...+.|+++|.||+|+...
T Consensus 96 ~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 96 DQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHHhcCCCCCCEEEEEECccchhc
Confidence 222222 2357899999999998653
No 102
>PLN03118 Rab family protein; Provisional
Probab=99.32 E-value=2e-11 Score=112.53 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=90.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+++|||||+++|++..+ +... |+
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~------~t---------------------------------------- 45 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLA------PT---------------------------------------- 45 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCC-CCcC------CC----------------------------------------
Confidence 346899999999999999999998765 1111 10
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-- 193 (441)
.+.......+.+ ......+.|+||||.... ..+...|++..+++|++++..+.+ +..
T Consensus 46 ------~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~ 105 (211)
T PLN03118 46 ------IGVDFKIKQLTV-GGKRLKLTIWDTAGQERF-------------RTLTSSYYRNAQGIILVYDVTRRETFTNLS 105 (211)
T ss_pred ------ceeEEEEEEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 000000111111 112246889999997442 456778899999988888654432 111
Q ss_pred HHHHHHHHHhC-CCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHHHH
Q 013508 194 SDAMKLAREVD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKE 265 (441)
Q Consensus 194 ~~~l~l~~~~~-~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e 265 (441)
..+........ ..+.+.++|.||+|+........+............|+.+...+..+++..+..+.....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 106 DVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 01222233222 2356899999999987543211111110111122346666666666666655555544433
No 103
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.32 E-value=5.5e-12 Score=123.55 Aligned_cols=131 Identities=28% Similarity=0.412 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCC-----CcccccccccccEEEEEE
Q 013508 7 LIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDF-----LPRGSGIVTRRPLVLQLH 81 (441)
Q Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~-----lP~~~~~~Tr~p~~~~l~ 81 (441)
+...++++++.+..+... .-.|+|+|+.|+|||||+|||-|..- -|+|..-+|..|+
T Consensus 17 ~~~~~s~i~~~l~~~~~~-------------~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~----- 78 (376)
T PF05049_consen 17 LQEVVSKIREALKDIDNA-------------PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT----- 78 (376)
T ss_dssp HHHHHHHHHHHHHHHHH---------------EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E-----
T ss_pred HHHHHHHHHHHHHHhhcC-------------ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe-----
Confidence 455677777777766532 23799999999999999999988532 2333333333332
Q ss_pred ecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCcc
Q 013508 82 KTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDT 161 (441)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~ 161 (441)
....|+.++++|||+||+..... +
T Consensus 79 ---------------------------------------------------~Y~~p~~pnv~lWDlPG~gt~~f---~-- 102 (376)
T PF05049_consen 79 ---------------------------------------------------PYPHPKFPNVTLWDLPGIGTPNF---P-- 102 (376)
T ss_dssp ---------------------------------------------------EEE-SS-TTEEEEEE--GGGSS-------
T ss_pred ---------------------------------------------------eCCCCCCCCCeEEeCCCCCCCCC---C--
Confidence 26678899999999999975421 1
Q ss_pred HHHHHHHHHHHh-hcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 162 IVEDIESMVRSY-VEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 162 ~~~~i~~~v~~y-i~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
. .+...+. +..-|.+|++. + ..+ ......+++.+...|++..+|-||+|.
T Consensus 103 ~----~~Yl~~~~~~~yD~fiii~-s--~rf-~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 P----EEYLKEVKFYRYDFFIIIS-S--ERF-TENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp H----HHHHHHTTGGG-SEEEEEE-S--SS---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred H----HHHHHHccccccCEEEEEe-C--CCC-chhhHHHHHHHHHcCCcEEEEEecccc
Confidence 1 1112211 33466655543 2 233 344556899999999999999999995
No 104
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.31 E-value=1.5e-11 Score=108.74 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhC---CCCCcEEEE
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVD---PTGERTFGV 213 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~---~~~~r~i~V 213 (441)
...+.++||||.... ..+...++..++++|++++..+... . ...+...++... ..+.|.++|
T Consensus 48 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 114 (165)
T cd04140 48 ICTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLV 114 (165)
T ss_pred EEEEEEEECCCCCcc-------------hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE
Confidence 346889999998543 3456677888898888775443221 0 122233344432 246899999
Q ss_pred eccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccC
Q 013508 214 LTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (441)
Q Consensus 214 ltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 255 (441)
.||+|+....................+|+.+.+....++++.
T Consensus 115 ~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 115 GNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQEL 156 (165)
T ss_pred EECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHH
Confidence 999999753321111100011122345666666655554443
No 105
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.31 E-value=2.7e-11 Score=109.53 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=88.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|++++|||||++++++..+-+......+..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~-------------------------------------------- 36 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVD-------------------------------------------- 36 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeE--------------------------------------------
Confidence 369999999999999999999987621111110000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~ 196 (441)
.....+.+.+ ....+.++||||.... ..+...++++++++|++++..+.+. . ...+
T Consensus 37 --------~~~~~~~~~~-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~ 94 (188)
T cd04125 37 --------FKIKTVYIEN-KIIKLQIWDTNGQERF-------------RSLNNSYYRGAHGYLLVYDVTDQESFENLKFW 94 (188)
T ss_pred --------EEEEEEEECC-EEEEEEEEECCCcHHH-------------HhhHHHHccCCCEEEEEEECcCHHHHHHHHHH
Confidence 0000111211 2346789999996431 4567888999999988886544221 0 1122
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
+..+....+...+.++|.||.|+.+...................|+.+.+....+++..+..+...
T Consensus 95 ~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 95 INEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred HHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 333334444567899999999987543211111110111123356777666665655554444433
No 106
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.31 E-value=2.4e-11 Score=107.51 Aligned_cols=115 Identities=22% Similarity=0.301 Sum_probs=71.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|+.|+|||||++++++..+ |..... |....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~-~~~~~~-~~~~~------------------------------------------- 36 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF-PENVPR-VLPEI------------------------------------------- 36 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CccCCC-cccce-------------------------------------------
Confidence 689999999999999999998875 322110 10000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
.+...+. .....+.++||||.... ......++..++.++++++..+.. +.. ..+
T Consensus 37 ---------~~~~~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 93 (166)
T cd01893 37 ---------TIPADVT-PERVPTTIVDTSSRPQD-------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKW 93 (166)
T ss_pred ---------Eeeeeec-CCeEEEEEEeCCCchhh-------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0111121 22347899999997542 245566778899887776543321 111 123
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
...++...+ +.|+++|.||+|+.+..
T Consensus 94 ~~~i~~~~~-~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 94 LPLIRRLGV-KVPIILVGNKSDLRDGS 119 (166)
T ss_pred HHHHHHhCC-CCCEEEEEEchhccccc
Confidence 344554443 78999999999997644
No 107
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.31 E-value=2e-11 Score=107.83 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHH----hCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLARE----VDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~----~~~~~~r~i~Vl 214 (441)
...+.++||||.... ..+...++..+++++++++..+.+. -......+.. ....+.|+++|+
T Consensus 49 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~v~vvd~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 114 (167)
T cd04160 49 NARLKFWDLGGQESL-------------RSLWDKYYAECHAIIYVIDSTDRER-FEESKSALEKVLRNEALEGVPLLILA 114 (167)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECchHHH-HHHHHHHHHHHHhChhhcCCCEEEEE
Confidence 468999999997532 4567788999998888876543221 1122222222 223478999999
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||+|+...
T Consensus 115 NK~D~~~~ 122 (167)
T cd04160 115 NKQDLPDA 122 (167)
T ss_pred EccccccC
Confidence 99998654
No 108
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.31 E-value=1.9e-11 Score=107.69 Aligned_cols=114 Identities=19% Similarity=0.250 Sum_probs=71.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.+++|||||++++++..+-|.... |..+....
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~--~~~~~~~~---------------------------------------- 39 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLS--TYALTLYK---------------------------------------- 39 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCC--ceeeEEEE----------------------------------------
Confidence 699999999999999999998876332211 11110000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l 197 (441)
..+.+ ......+.++||||.... ..+...|++++|++|++++..+... . ...++
T Consensus 40 ----------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 95 (161)
T cd04124 40 ----------HNAKF-EGKTILVDFWDTAGQERF-------------QTMHASYYHKAHACILVFDVTRKITYKNLSKWY 95 (161)
T ss_pred ----------EEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00011 112346889999996432 4677889999999888886543211 0 12233
Q ss_pred HHHHHhCCCCCcEEEEeccCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
..++... .+.|.++|+||+|+.
T Consensus 96 ~~i~~~~-~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 96 EELREYR-PEIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHhC-CCCcEEEEEECccCc
Confidence 3333332 258999999999985
No 109
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.31 E-value=2.4e-11 Score=108.13 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=71.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|++||++++|||||++++++..| +.... |+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f-~~~~~-----~t~------------------------------------------ 33 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF-DKNYK-----ATI------------------------------------------ 33 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC-CCCCC-----Cce------------------------------------------
Confidence 699999999999999999999876 32221 110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l 197 (441)
+ ..+ ....+.+.+ ...++.|+||||..+. ..+...|++.+|+++++++..+.+ +.. ..++
T Consensus 34 ~--~~~--~~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~ 95 (170)
T cd04108 34 G--VDF--EMERFEILG-VPFSLQLWDTAGQERF-------------KCIASTYYRGAQAIIIVFDLTDVASLEHTRQWL 95 (170)
T ss_pred e--eEE--EEEEEEECC-EEEEEEEEeCCChHHH-------------HhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 0 000 001111221 2347899999997442 457788899999888887654321 111 1222
Q ss_pred HHH-HHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLA-REVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~-~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+ +...+...++++|.||.|+.+.
T Consensus 96 ~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 96 EDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 222 2233444568999999998654
No 110
>PTZ00369 Ras-like protein; Provisional
Probab=99.30 E-value=2.6e-11 Score=109.81 Aligned_cols=117 Identities=19% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-.+|+|+|.+|+|||||++++.+..+. ..... |-..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~-t~~~------------------------------------------ 40 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDP-TIED------------------------------------------ 40 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCC-chhh------------------------------------------
Confidence 468999999999999999999987652 11100 0000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~ 195 (441)
.+ ...+.+. .....+.|+||||.... ..+...|++..+++|++++..+.+. . ...
T Consensus 41 ------~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~ 97 (189)
T PTZ00369 41 ------SY---RKQCVID-EETCLLDILDTAGQEEY-------------SAMRDQYMRTGQGFLCVYSITSRSSFEEIAS 97 (189)
T ss_pred ------EE---EEEEEEC-CEEEEEEEEeCCCCccc-------------hhhHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 00 0001111 12246789999997543 3567778999999888876544321 0 111
Q ss_pred HHHHHHHh-CCCCCcEEEEeccCCCCC
Q 013508 196 AMKLAREV-DPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 ~l~l~~~~-~~~~~r~i~VltK~D~~~ 221 (441)
+...+... ...+.|+++|.||+|+..
T Consensus 98 ~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 98 FREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 22222222 233679999999999854
No 111
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.30 E-value=3e-11 Score=110.43 Aligned_cols=117 Identities=17% Similarity=0.285 Sum_probs=75.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
||+|+|+.++|||||++.+....| +.... .|-
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f-~~~~~-~Ti---------------------------------------------- 33 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF-CEACK-SGV---------------------------------------------- 33 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC-CCcCC-Ccc----------------------------------------------
Confidence 799999999999999999998776 21111 010
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
| .+|... .+.+.+ ....+.|+||||.... +.+...|+++++++|++++..+.+ +. ...++
T Consensus 34 ~--~~~~~~--~i~~~~-~~v~l~iwDtaGqe~~-------------~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~ 95 (202)
T cd04120 34 G--VDFKIK--TVELRG-KKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLPKWM 95 (202)
T ss_pred e--eEEEEE--EEEECC-EEEEEEEEeCCCchhh-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHH
Confidence 0 011111 111211 2357899999997432 577889999999999988654432 11 12334
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++.....+.++++|.||+|+...
T Consensus 96 ~~i~~~~~~~~piilVgNK~DL~~~ 120 (202)
T cd04120 96 KMIDKYASEDAELLLVGNKLDCETD 120 (202)
T ss_pred HHHHHhCCCCCcEEEEEECcccccc
Confidence 4555555567899999999998653
No 112
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.30 E-value=1.6e-11 Score=107.24 Aligned_cols=116 Identities=18% Similarity=0.211 Sum_probs=71.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.++||||||++++++..+ +......+..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~------------------------------------------- 36 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSY------------------------------------------- 36 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeE-------------------------------------------
Confidence 489999999999999999998864 333222222110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~~l 197 (441)
.....+ ......+.++|+||.... ..+...++...+.++++++..+.+... ....
T Consensus 37 ---------~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~ 93 (160)
T cd00876 37 ---------RKTIVV-DGETYTLDILDTAGQEEF-------------SAMRDLYIRQGDGFILVYSITDRESFEEIKGYR 93 (160)
T ss_pred ---------EEEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 000111 112346889999997442 456667788899888887654432111 1112
Q ss_pred HHHHHhCC-CCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDP-TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~-~~~r~i~VltK~D~~~~ 222 (441)
..+....+ .+.|+++|+||+|+...
T Consensus 94 ~~~~~~~~~~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 94 EQILRVKDDEDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHHHhcCCCCCcEEEEEECCccccc
Confidence 22222222 57899999999999863
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.30 E-value=6e-11 Score=105.70 Aligned_cols=115 Identities=17% Similarity=0.311 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|.++||||||+++|++..+ +. ..|+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-DT------ISPT---------------------------------------- 45 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-CC------cCCc----------------------------------------
Confidence 457899999999999999999998753 11 1111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~ 194 (441)
.++....+ .+ +...+.++||||.... +.+...|+..+++++++++..+.. +.. .
T Consensus 46 ------~g~~~~~~--~~---~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (173)
T cd04154 46 ------LGFQIKTL--EY---EGYKLNIWDVGGQKTL-------------RPYWRNYFESTDALIWVVDSSDRLRLDDCK 101 (173)
T ss_pred ------cccceEEE--EE---CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECCCHHHHHHHH
Confidence 00111111 11 2457899999997431 457788899999988887654431 111 1
Q ss_pred HHH-HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAM-KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l-~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+ .+.+.....+.|+++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 102 RELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 111 1222212246899999999998754
No 114
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.30 E-value=3e-11 Score=103.82 Aligned_cols=24 Identities=17% Similarity=0.536 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+|+++|++|+|||||+|+|+|..+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 699999999999999999998764
No 115
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.30 E-value=1.9e-11 Score=111.69 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=89.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++|+|||||++++.+..+.+ .. ..|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~-~~-~~t~~------------------------------------------ 40 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG-SY-ITTIG------------------------------------------ 40 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-Cc-Ccccc------------------------------------------
Confidence 45789999999999999999999887511 10 11100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH-
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~- 195 (441)
+......+.+. .....+.|+||||.... ..+...|+.+++++|++++.++... -+.
T Consensus 41 --------~~~~~~~~~~~-~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~a~~iilv~D~~~~~s-~~~~ 97 (199)
T cd04110 41 --------VDFKIRTVEIN-GERVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTNGES-FVNV 97 (199)
T ss_pred --------ceeEEEEEEEC-CEEEEEEEEeCCCchhH-------------HHHHHHHhCCCcEEEEEEECCCHHH-HHHH
Confidence 00000111111 12246889999996332 4667889999998888876644321 112
Q ss_pred --HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 196 --AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 196 --~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
++..++... ...+.++|.||+|+.+...................|+.+......++...+.++...
T Consensus 98 ~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~ 165 (199)
T cd04110 98 KRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL 165 (199)
T ss_pred HHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 222222222 357899999999987543211111111111223456777666666665555554443
No 116
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.29 E-value=2.8e-11 Score=107.45 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh----CCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~----~~~~~r~i~Vl 214 (441)
...+.++||||.... +.+...|+..++++|++++..+..- -.+.......+ ...+.|+++|.
T Consensus 42 ~~~i~l~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~s~~~s-~~~~~~~~~~~~~~~~~~~~piilv~ 107 (169)
T cd04158 42 NLKFTIWDVGGKHKL-------------RPLWKHYYLNTQAVVFVVDSSHRDR-VSEAHSELAKLLTEKELRDALLLIFA 107 (169)
T ss_pred CEEEEEEECCCChhc-------------chHHHHHhccCCEEEEEEeCCcHHH-HHHHHHHHHHHhcChhhCCCCEEEEE
Confidence 457899999997542 3567788999999998886544221 11122222222 12347899999
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||.|+.+.
T Consensus 108 NK~Dl~~~ 115 (169)
T cd04158 108 NKQDVAGA 115 (169)
T ss_pred eCcCcccC
Confidence 99998643
No 117
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.29 E-value=4.3e-11 Score=105.02 Aligned_cols=117 Identities=19% Similarity=0.246 Sum_probs=71.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.+|||||||+|+|++..+.+......+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---------------------------------------------- 35 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGV---------------------------------------------- 35 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccc----------------------------------------------
Confidence 6899999999999999999988752211111100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH---H
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD---A 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~---~ 196 (441)
+.....+.+ ......+.++|+||.... ..+...+++..|+++++++..+.. .-+. +
T Consensus 36 ------~~~~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~ 94 (161)
T cd01863 36 ------DFKVKTLTV-DGKKVKLAIWDTAGQERF-------------RTLTSSYYRGAQGVILVYDVTRRD-TFTNLETW 94 (161)
T ss_pred ------eEEEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhHHHhCCCCEEEEEEECCCHH-HHHhHHHH
Confidence 000111111 122357899999996432 355677788899888887654321 1111 2
Q ss_pred HHHHHH-hCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLARE-VDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~-~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.+.. ....+.+.++|.||+|+....
T Consensus 95 ~~~i~~~~~~~~~~~~iv~nK~D~~~~~ 122 (161)
T cd01863 95 LNELETYSTNNDIVKMLVGNKIDKENRE 122 (161)
T ss_pred HHHHHHhCCCCCCcEEEEEECCcccccc
Confidence 222222 234578899999999998443
No 118
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.29 E-value=3.5e-11 Score=105.32 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=47.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHH-HHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA-MKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~-l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.++||||.... ..+...++...++++++++..+.+ +.. ... ..+.+.....+.|+++|+|
T Consensus 42 ~~~~~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 108 (158)
T cd00878 42 NVSFTVWDVGGQDKI-------------RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFAN 108 (158)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEee
Confidence 457999999997542 456778888999988887665432 111 111 1222323345789999999
Q ss_pred cCCCCCCc
Q 013508 216 KLDLMDKG 223 (441)
Q Consensus 216 K~D~~~~~ 223 (441)
|+|+....
T Consensus 109 K~D~~~~~ 116 (158)
T cd00878 109 KQDLPGAL 116 (158)
T ss_pred ccCCcccc
Confidence 99987643
No 119
>PLN03110 Rab GTPase; Provisional
Probab=99.29 E-value=3.2e-11 Score=111.68 Aligned_cols=120 Identities=16% Similarity=0.221 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..-.|+++|++++|||||+++|++..+ +.... |+.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~-~~~~~-----~t~--------------------------------------- 45 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF-CLESK-----STI--------------------------------------- 45 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-----Cce---------------------------------------
Confidence 345899999999999999999999875 21111 100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
| ..+. ...+.+. .....+.|+||||... ...+...|++.++++|++++..+... . ..
T Consensus 46 ---g--~~~~--~~~v~~~-~~~~~l~l~Dt~G~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~ 104 (216)
T PLN03110 46 ---G--VEFA--TRTLQVE-GKTVKAQIWDTAGQER-------------YRAITSAYYRGAVGALLVYDITKRQTFDNVQ 104 (216)
T ss_pred ---e--EEEE--EEEEEEC-CEEEEEEEEECCCcHH-------------HHHHHHHHhCCCCEEEEEEECCChHHHHHHH
Confidence 0 0000 0111121 1234788999999633 24677888999998888776543211 1 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+.+.++++|.||+|+...
T Consensus 105 ~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 105 RWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 3444555555567899999999998643
No 120
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.29 E-value=3.3e-11 Score=106.81 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHH-hCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLARE-VDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~-~~~~~~r~i~VltK 216 (441)
..+.++||||..+. ..+...|+...+.++++++..+.. +. ...+...+.. ....+.|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQF-------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCcccc-------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 46789999997543 357777888888888876544321 11 1122222222 33457899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
.|+....
T Consensus 116 ~D~~~~~ 122 (168)
T cd04177 116 ADLEDDR 122 (168)
T ss_pred hhccccC
Confidence 9987543
No 121
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.29 E-value=3e-11 Score=107.10 Aligned_cols=71 Identities=14% Similarity=0.301 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh----CCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV----DPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~----~~~~~r~i~Vl 214 (441)
...+.++|+||... .+.+...|+.+++++|++++..+.. .-..+...+..+ ...+.|.++|+
T Consensus 42 ~~~~~i~D~~G~~~-------------~~~~~~~~~~~a~~ii~V~D~s~~~-s~~~~~~~l~~l~~~~~~~~~piliv~ 107 (167)
T cd04161 42 KYEVCIFDLGGGAN-------------FRGIWVNYYAEAHGLVFVVDSSDDD-RVQEVKEILRELLQHPRVSGKPILVLA 107 (167)
T ss_pred CEEEEEEECCCcHH-------------HHHHHHHHHcCCCEEEEEEECCchh-HHHHHHHHHHHHHcCccccCCcEEEEE
Confidence 45789999999633 2567889999999999988765432 122222223322 12478999999
Q ss_pred ccCCCCCCc
Q 013508 215 TKLDLMDKG 223 (441)
Q Consensus 215 tK~D~~~~~ 223 (441)
||.|+....
T Consensus 108 NK~Dl~~~~ 116 (167)
T cd04161 108 NKQDKKNAL 116 (167)
T ss_pred eCCCCcCCC
Confidence 999987543
No 122
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.29 E-value=2.2e-11 Score=108.25 Aligned_cols=145 Identities=17% Similarity=0.180 Sum_probs=81.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|++++|||||++++++..+ |..... |-.. .
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~~~-t~~~---~--------------------------------------- 38 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PERTEA-TIGV---D--------------------------------------- 38 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCcccc-ceeE---E---------------------------------------
Confidence 5799999999999999999998765 322110 1000 0
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~ 196 (441)
+ ....+.+. .....+.++||||.... . ..+...|++++|++|++++..+... . ...+
T Consensus 39 ------~--~~~~~~~~-~~~~~~~i~Dt~G~~~~---------~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 97 (170)
T cd04115 39 ------F--RERTVEID-GERIKVQLWDTAGQERF---------R---KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW 97 (170)
T ss_pred ------E--EEEEEEEC-CeEEEEEEEeCCChHHH---------H---HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHH
Confidence 0 00011111 12347899999996321 1 2467788899999988876654221 0 1122
Q ss_pred HHHHHHh-CCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCC
Q 013508 197 MKLAREV-DPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (441)
Q Consensus 197 l~l~~~~-~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 248 (441)
+..+... .....|+++|.||+|+........+...........+|+.+.+.+
T Consensus 98 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (170)
T cd04115 98 IEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccC
Confidence 2223322 234689999999999875432211111111112235677766655
No 123
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.28 E-value=3.8e-11 Score=107.02 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++|+|||||++.+.+..| |.....+.. .
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~~f-~~~~~~t~~-~-------------------------------------------- 37 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISHSF-PDYHDPTIE-D-------------------------------------------- 37 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC-CCCcCCccc-c--------------------------------------------
Confidence 699999999999999999998876 321111110 0
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l 197 (441)
.+ ...+.+.+ ....+.|+||||.... +.+...|+..++++|++++..+.. +.+ .++.
T Consensus 38 ----~~---~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~ 96 (172)
T cd04141 38 ----AY---KQQARIDN-EPALLDILDTAGQAEF-------------TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK 96 (172)
T ss_pred ----eE---EEEEEECC-EEEEEEEEeCCCchhh-------------HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHH
Confidence 00 00111211 2246889999997442 467788899999988887654322 111 1222
Q ss_pred HHHHHh-CCCCCcEEEEeccCCCCCCcCc-HHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 198 KLAREV-DPTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 198 ~l~~~~-~~~~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
..+... ...+.|+++|.||+|+...... ..+.. .........|+.+.+....+++..+..+
T Consensus 97 ~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 97 KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGR-NLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHH-HHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 334443 2346899999999998643211 11110 0011123356666665555554444333
No 124
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.28 E-value=3.7e-11 Score=107.65 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=83.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|.+|+|||||++++++..+ +......+.....
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~------------------------------------------ 39 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFS------------------------------------------ 39 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEE------------------------------------------
Confidence 699999999999999999998764 3222111111000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH---
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA--- 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~--- 196 (441)
-.+.+. .....+.++||||.... ..+...+....++++++++..+... -+..
T Consensus 40 ----------~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~~ 94 (180)
T cd04137 40 ----------KIIRYK-GQDYHLEIVDTAGQDEY-------------SILPQKYSIGIHGYILVYSVTSRKS-FEVVKVI 94 (180)
T ss_pred ----------EEEEEC-CEEEEEEEEECCChHhh-------------HHHHHHHHhhCCEEEEEEECCCHHH-HHHHHHH
Confidence 000111 12246789999997432 2345567777888888776544221 1111
Q ss_pred -HHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 197 -MKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 197 -l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
..+++.....+.|.|+|.||+|+.....................++.+.+.+..++...+..+..
T Consensus 95 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 95 YDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred HHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 22334334456799999999998753321111111111122234556655555555444444433
No 125
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.28 E-value=2.5e-11 Score=107.76 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+++|.+|+|||||+++|.+..+.. ..|+.
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-------~~~t~--------------------------------------- 41 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-------TIPTV--------------------------------------- 41 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-------ccCCc---------------------------------------
Confidence 35689999999999999999998765411 11210
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
| +... . +.. ....+.++||||.... +.+...|+++++++|++++..+.. .-..+
T Consensus 42 ---g----~~~~--~--~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~a~~ii~v~D~t~~~-s~~~~ 95 (168)
T cd04149 42 ---G----FNVE--T--VTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDSADRD-RIDEA 95 (168)
T ss_pred ---c----cceE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhccCCEEEEEEeCCchh-hHHHH
Confidence 0 0000 1 111 2357899999998432 456778899999999988765432 11222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCC
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~ 221 (441)
.+.+.++ . ..+.|.++|.||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 96 RQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 2222222 1 23579999999999864
No 126
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=2.4e-11 Score=108.47 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+++|.+++|||||+++|++..+.+. .|+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-------~~t~---------------------------------------- 47 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-------SPTI---------------------------------------- 47 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-------CCcc----------------------------------------
Confidence 45899999999999999999987765211 1210
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~ 195 (441)
+. +... +. .+...+.++||||.... ..+...|+..++.+|++++..+.+ +.. ..
T Consensus 48 --~~------~~~~--~~-~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~ 103 (174)
T cd04153 48 --GS------NVEE--IV-YKNIRFLMWDIGGQESL-------------RSSWNTYYTNTDAVILVIDSTDRERLPLTKE 103 (174)
T ss_pred --cc------ceEE--EE-ECCeEEEEEECCCCHHH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 00 0001 11 12357899999997432 456677888999988888654321 110 11
Q ss_pred -HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 -AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 -~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..++++.....+.|+++|+||+|+..
T Consensus 104 ~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 104 ELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 11122211223589999999999865
No 127
>PLN03108 Rab family protein; Provisional
Probab=99.27 E-value=5e-11 Score=109.86 Aligned_cols=153 Identities=15% Similarity=0.195 Sum_probs=85.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|++++|||||++.|++..+-|.........
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~------------------------------------------- 42 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE------------------------------------------- 42 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccce-------------------------------------------
Confidence 4689999999999999999999987633221110000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~ 195 (441)
+. .-.+.+.+. ...+.++||||.... ..+...|+..++++|++++..+..... ..
T Consensus 43 -------~~--~~~i~~~~~-~i~l~l~Dt~G~~~~-------------~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~ 99 (210)
T PLN03108 43 -------FG--ARMITIDNK-PIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLAS 99 (210)
T ss_pred -------EE--EEEEEECCE-EEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCcHHHHHHHHH
Confidence 00 001112111 135789999996432 356778888899888887664432111 12
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
++..+........|+++|.||+|+........+............|+.+...+..+++..+
T Consensus 100 ~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 2322333334468899999999987543211111000011122346666665555544433
No 128
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.27 E-value=1.6e-11 Score=113.18 Aligned_cols=123 Identities=25% Similarity=0.359 Sum_probs=70.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccc--cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+|+|+|..+|||||+.|+|+|.+.++.+. ..||..+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~-------------------------------------- 43 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYS-------------------------------------- 43 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEE--------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceee--------------------------------------
Confidence 69999999999999999999999887764 34554432111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH---HhhcCCCeEEEEeccCcccccc-
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR---SYVEKPNSVILAISPANQDIAT- 193 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~~~~~iil~v~~a~~~~~~- 193 (441)
...+...+++|||||+.+... ...+..+.+.+ .....+++++|++ +.. .+..
T Consensus 44 -----------------~~~~g~~v~VIDTPGl~d~~~-----~~~~~~~~i~~~l~~~~~g~ha~llVi-~~~-r~t~~ 99 (212)
T PF04548_consen 44 -----------------GEVDGRQVTVIDTPGLFDSDG-----SDEEIIREIKRCLSLCSPGPHAFLLVI-PLG-RFTEE 99 (212)
T ss_dssp -----------------EEETTEEEEEEE--SSEETTE-----EHHHHHHHHHHHHHHTTT-ESEEEEEE-ETT-B-SHH
T ss_pred -----------------eeecceEEEEEeCCCCCCCcc-----cHHHHHHHHHHHHHhccCCCeEEEEEE-ecC-cchHH
Confidence 112346899999999976532 22222222222 2233477766665 444 4432
Q ss_pred -HHHHHHHHHh-CC-CCCcEEEEeccCCCCCCcC
Q 013508 194 -SDAMKLAREV-DP-TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 194 -~~~l~l~~~~-~~-~~~r~i~VltK~D~~~~~~ 224 (441)
...++.+..+ .+ .-.++|+|+|..|...+..
T Consensus 100 ~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 100 DREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred HHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 3344444433 32 2468999999999887654
No 129
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.27 E-value=3.5e-12 Score=115.45 Aligned_cols=69 Identities=25% Similarity=0.330 Sum_probs=47.3
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
.....++|+||||..+. ...+...+..+|++|++|++ ..+. .....+.++.+...+.|.|+|+||
T Consensus 67 ~~~~~i~~iDtPG~~~f-------------~~~~~~~~~~~D~ailvVda-~~g~-~~~~~~~l~~~~~~~~p~ivvlNK 131 (188)
T PF00009_consen 67 ENNRKITLIDTPGHEDF-------------IKEMIRGLRQADIAILVVDA-NDGI-QPQTEEHLKILRELGIPIIVVLNK 131 (188)
T ss_dssp ESSEEEEEEEESSSHHH-------------HHHHHHHHTTSSEEEEEEET-TTBS-THHHHHHHHHHHHTT-SEEEEEET
T ss_pred ccccceeecccccccce-------------eecccceecccccceeeeec-cccc-ccccccccccccccccceEEeeee
Confidence 45678999999997432 23344557889988877754 4444 334444555555667889999999
Q ss_pred CCCC
Q 013508 217 LDLM 220 (441)
Q Consensus 217 ~D~~ 220 (441)
+|+.
T Consensus 132 ~D~~ 135 (188)
T PF00009_consen 132 MDLI 135 (188)
T ss_dssp CTSS
T ss_pred ccch
Confidence 9999
No 130
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.27 E-value=6.5e-11 Score=104.97 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++++|||||++++++..+.+......+...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~----------------------------------------- 42 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF----------------------------------------- 42 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE-----------------------------------------
Confidence 356899999999999999999998876332211110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~ 194 (441)
. ...+.+ ......+.|+||||... ...+...|++.++++|++++..+.+ +.. .
T Consensus 43 ---------~--~~~~~~-~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (170)
T cd04116 43 ---------L--NKDLEV-DGHFVTLQIWDTAGQER-------------FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLS 97 (170)
T ss_pred ---------E--EEEEEE-CCeEEEEEEEeCCChHH-------------HHHhHHHHhcCCCEEEEEEECCCHHHHHhHH
Confidence 0 001111 12234678999999633 2467778899999888776543321 111 1
Q ss_pred HHHH-HHHHhC---CCCCcEEEEeccCCCCC
Q 013508 195 DAMK-LAREVD---PTGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~-l~~~~~---~~~~r~i~VltK~D~~~ 221 (441)
.+.. +..... +.+.|+++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 98 NWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 1221 222111 34679999999999874
No 131
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=6.8e-12 Score=119.13 Aligned_cols=174 Identities=18% Similarity=0.271 Sum_probs=104.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCc---ccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLP---RGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP---~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (441)
..-|.|.++|..|.||||+|+.|++.++ | .|...+|-+-+.+-...+.+. ..-....-.+...|.-+....+..
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dy-pg~riGpEPTtd~Fi~vM~G~~e~~-ipGnal~vd~~~pF~gL~~FG~af- 132 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDY-PGLRIGPEPTTDRFIAVMHGDEEGS-IPGNALVVDAKKPFRGLNKFGNAF- 132 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCC-CccccCCCCCcceeEEEEecCcccc-cCCceeeecCCCchhhhhhhHHHH-
Confidence 3569999999999999999999999985 5 233344444444333322211 000000001111121122222222
Q ss_pred HHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc
Q 013508 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (441)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~ 192 (441)
-+.-.+.++.++-...++||||||+.+.... .-+-.-.....+.-|+...|.|||+.+++.-|+
T Consensus 133 -------------lnRf~csqmp~~vLe~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI- 196 (532)
T KOG1954|consen 133 -------------LNRFMCSQLPNQVLESVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDI- 196 (532)
T ss_pred -------------HHHHHHhcCChhhhhheeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccc-
Confidence 2222222344555668999999999875422 111111123567778889999999999988787
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHH
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDV 229 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~ 229 (441)
..+.-+.+..+......+-+|+||.|.++... ++.+
T Consensus 197 sdEf~~vi~aLkG~EdkiRVVLNKADqVdtqq-LmRV 232 (532)
T KOG1954|consen 197 SDEFKRVIDALKGHEDKIRVVLNKADQVDTQQ-LMRV 232 (532)
T ss_pred cHHHHHHHHHhhCCcceeEEEeccccccCHHH-HHHH
Confidence 33444577777777788999999999998753 4443
No 132
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.26 E-value=5.8e-11 Score=104.53 Aligned_cols=149 Identities=12% Similarity=0.157 Sum_probs=83.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++++|||||++.+++..+.|.... |..+.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~--t~~~~------------------------------------------- 36 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHIS--TIGVD------------------------------------------- 36 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCC--ceeeE-------------------------------------------
Confidence 689999999999999999998876332211 11110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l 197 (441)
+. ...+.+.+ ....+.++||||.... ..+...|+..+++++++++..+.. +. ...++
T Consensus 37 -----~~--~~~~~~~~-~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~ 95 (161)
T cd04117 37 -----FK--MKTIEVDG-IKVRIQIWDTAGQERY-------------QTITKQYYRRAQGIFLVYDISSERSYQHIMKWV 95 (161)
T ss_pred -----EE--EEEEEECC-EEEEEEEEeCCCcHhH-------------HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHH
Confidence 00 00111211 1246889999996432 356778889999988887654321 10 11222
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhcc
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 254 (441)
..++...+...+.++|.||.|+........+...........+|+.+......+++.
T Consensus 96 ~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 152 (161)
T cd04117 96 SDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKE 152 (161)
T ss_pred HHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 223334445678999999999875432111111111112234576666555444433
No 133
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.26 E-value=4.9e-11 Score=108.84 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=44.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH---HH-HHHHhCCCCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA---MK-LAREVDPTGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~---l~-l~~~~~~~~~r~i~Vlt 215 (441)
..+.|+||||.... ..+...|+..+|++|++++..+. ..-+.. +. +.......+.|+|+|+|
T Consensus 47 ~~l~i~D~~G~~~~-------------~~~~~~~~~~ad~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~N 112 (198)
T cd04147 47 LTLDILDTSGSYSF-------------PAMRKLSIQNSDAFALVYAVDDP-ESFEEVERLREEILEVKEDKFVPIVVVGN 112 (198)
T ss_pred EEEEEEECCCchhh-------------hHHHHHHhhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 46889999997543 34566788899988888765332 111111 12 22222335789999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+...
T Consensus 113 K~Dl~~~ 119 (198)
T cd04147 113 KADSLEE 119 (198)
T ss_pred ccccccc
Confidence 9998753
No 134
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.26 E-value=1.8e-11 Score=108.36 Aligned_cols=70 Identities=21% Similarity=0.198 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH---HHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~---~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||.... ..+...+++.+++++++++..+..-... .++..+....+ +.|+++|.||
T Consensus 48 ~~l~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 113 (171)
T cd00157 48 VNLGLWDTAGQEEY-------------DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTK 113 (171)
T ss_pred EEEEEEeCCCcccc-------------cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEcc
Confidence 46889999998642 1233345677898888876544211111 12222222222 6899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+....
T Consensus 114 ~Dl~~~~ 120 (171)
T cd00157 114 IDLRDDE 120 (171)
T ss_pred HHhhhch
Confidence 9988654
No 135
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.26 E-value=4.4e-11 Score=111.85 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+|+++|.+|+|||||+|+|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999864
No 136
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.26 E-value=5.7e-11 Score=107.77 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||||.... ..+...|+..+++++++++..+.. +.. ..++..++... .+.|+++|.||+
T Consensus 50 ~~l~i~D~~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~ 115 (193)
T cd04118 50 VTLGIWDTAGSERY-------------EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKS 115 (193)
T ss_pred EEEEEEECCCchhh-------------hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcc
Confidence 35789999997432 355667888899888887543321 100 12233333332 268999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+.+.
T Consensus 116 Dl~~~ 120 (193)
T cd04118 116 DLIEQ 120 (193)
T ss_pred ccccc
Confidence 98753
No 137
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.25 E-value=2e-11 Score=110.97 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEec
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~Vlt 215 (441)
.+..+++|+||||..+ . ...+...+..+|+++++|+ +..+. .....++++.+...+.+ .|+|+|
T Consensus 62 ~~~~~i~~iDtPG~~~------------~-~~~~~~~~~~~D~~ilVvd-a~~g~-~~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 62 TANRHYAHVDCPGHAD------------Y-IKNMITGAAQMDGAILVVS-ATDGP-MPQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CCCeEEEEEECcCHHH------------H-HHHHHHHhhhCCEEEEEEE-CCCCC-cHHHHHHHHHHHHcCCCcEEEEEe
Confidence 3456899999999843 1 1233455667898888775 44444 23333345555556665 789999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|++..
T Consensus 127 K~D~~~~ 133 (195)
T cd01884 127 KADMVDD 133 (195)
T ss_pred CCCCCCc
Confidence 9999753
No 138
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.25 E-value=2.8e-11 Score=111.37 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=47.2
Q ss_pred CcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH--HHHHHH
Q 013508 124 QISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--AMKLAR 201 (441)
Q Consensus 124 ~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~--~l~l~~ 201 (441)
+++.+.....+ ..+...+.|+||||.... ...+..++..+|.+|++++. ..++..+. ...+++
T Consensus 62 g~T~~~~~~~~-~~~~~~~~liDTpG~~~~-------------~~~~~~~~~~ad~~llVvD~-~~~~~~~~~~~~~~~~ 126 (208)
T cd04166 62 GITIDVAYRYF-STPKRKFIIADTPGHEQY-------------TRNMVTGASTADLAILLVDA-RKGVLEQTRRHSYILS 126 (208)
T ss_pred CcCeecceeEE-ecCCceEEEEECCcHHHH-------------HHHHHHhhhhCCEEEEEEEC-CCCccHhHHHHHHHHH
Confidence 34444444333 335668999999997321 12234567889988887754 33332221 223333
Q ss_pred HhCCCC-CcEEEEeccCCCCCC
Q 013508 202 EVDPTG-ERTFGVLTKLDLMDK 222 (441)
Q Consensus 202 ~~~~~~-~r~i~VltK~D~~~~ 222 (441)
. .+ .++|+|+||+|+...
T Consensus 127 ~---~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 127 L---LGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred H---cCCCcEEEEEEchhcccC
Confidence 3 33 357889999999753
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.25 E-value=7.5e-11 Score=107.21 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=48.3
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....+.|+||||..+. ..++..|++.+|+++++++..+ +. ......+++.+...+.|.++|+||+
T Consensus 63 ~~~~~~l~DtpG~~~~-------------~~~~~~~~~~~d~~ilV~d~~~-~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 127 (194)
T cd01891 63 KDTKINIVDTPGHADF-------------GGEVERVLSMVDGVLLLVDASE-GP-MPQTRFVLKKALELGLKPIVVINKI 127 (194)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHhcCEEEEEEECCC-Cc-cHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3457899999998542 4577788999999888876543 22 1122223444444578999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 128 Dl~~~ 132 (194)
T cd01891 128 DRPDA 132 (194)
T ss_pred CCCCC
Confidence 99753
No 140
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.24 E-value=1.4e-10 Score=102.55 Aligned_cols=113 Identities=18% Similarity=0.294 Sum_probs=72.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
||+++|.+++|||||++++++..+ +... .|+.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~-~~~~-----~pt~------------------------------------------ 32 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERS-LESV-----VPTT------------------------------------------ 32 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-cccc-----cccC------------------------------------------
Confidence 689999999999999999998764 2111 1210
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
| +. .+ .+.. ....+.++||||.... +.+...|++.++++|++++..+.. .-..+...
T Consensus 33 g----~~--~~--~i~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~V~D~t~~~-s~~~~~~~ 89 (164)
T cd04162 33 G----FN--SV--AIPT-QDAIMELLEIGGSQNL-------------RKYWKRYLSGSQGLIFVVDSADSE-RLPLARQE 89 (164)
T ss_pred C----cc--eE--EEee-CCeEEEEEECCCCcch-------------hHHHHHHHhhCCEEEEEEECCCHH-HHHHHHHH
Confidence 1 10 11 1222 2457899999997442 466778999999999888654422 11112222
Q ss_pred HHHh--CCCCCcEEEEeccCCCCCCc
Q 013508 200 AREV--DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 200 ~~~~--~~~~~r~i~VltK~D~~~~~ 223 (441)
+..+ ...+.|+++|.||.|+....
T Consensus 90 l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 90 LHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 2222 12478999999999986543
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.24 E-value=9.7e-11 Score=105.92 Aligned_cols=114 Identities=15% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-++|+++|++|||||||+++|++..+ . ...+|..|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~--~~~~T~~~~~--------------------------------------- 55 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-A--QHVPTLHPTS--------------------------------------- 55 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-c--ccCCccCcce---------------------------------------
Confidence 567899999999999999999998764 1 1122322211
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH-
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD- 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~- 195 (441)
..+.+ +...+.++|+||... .+.+...|+..++.++++++..+.......
T Consensus 56 -------------~~i~~---~~~~~~l~D~~G~~~-------------~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~ 106 (190)
T cd00879 56 -------------EELTI---GNIKFKTFDLGGHEQ-------------ARRLWKDYFPEVDGIVFLVDAADPERFQESK 106 (190)
T ss_pred -------------EEEEE---CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEECCcHHHHHHHH
Confidence 01111 234688999999632 145677889999988888765442111111
Q ss_pred --HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 --AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 --~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
...+.+.....+.|+++|+||+|+..
T Consensus 107 ~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 107 EELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 11122222234689999999999864
No 142
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.24 E-value=5.2e-11 Score=125.43 Aligned_cols=110 Identities=24% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
.++.++||||..+... .+.. +.+.+.|+. .+|.+++++++.+ .++.+.+..++...+.|+++|+||+
T Consensus 41 ~~i~lvDtPG~~~~~~----~s~~---e~v~~~~l~~~~aDvvI~VvDat~----ler~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTT----FSLE---EEVARDYLLNEKPDLVVNVVDASN----LERNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCc----cchH---HHHHHHHHhhcCCCEEEEEecCCc----chhhHHHHHHHHhcCCCEEEEEehh
Confidence 4689999999987532 1222 345566654 5787777665543 2344556666666789999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
|+.++.....+. +.....++.+++.+..+++.++++..+.+.+
T Consensus 110 Dl~~~~~i~~d~-~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~ 152 (591)
T TIGR00437 110 DEAEKKGIRIDE-EKLEERLGVPVVPTSATEGRGIERLKDAIRK 152 (591)
T ss_pred HHHHhCCChhhH-HHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 987543221111 1011233456777777777776665555443
No 143
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=2.1e-10 Score=114.85 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=33.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEE
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (441)
.+|++||.||+|||||+|+|++.++.......||+.|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999988655566778888865
No 144
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.23 E-value=4.4e-11 Score=105.56 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHHhC--CCCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVD--PTGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~--~~~~r~i~Vlt 215 (441)
..+.++||||..... ......++..+|++|++++..+.. +. ...+...+.... ..+.|.++|.|
T Consensus 47 ~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~n 114 (165)
T cd04146 47 VSLEILDTAGQQQAD------------TEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGN 114 (165)
T ss_pred EEEEEEECCCCcccc------------cchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 367899999986411 123556788899888887654421 10 012233344433 34689999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+...
T Consensus 115 K~Dl~~~ 121 (165)
T cd04146 115 KADLLHY 121 (165)
T ss_pred CCchHHh
Confidence 9998643
No 145
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.8e-10 Score=112.59 Aligned_cols=182 Identities=20% Similarity=0.273 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcch
Q 013508 10 LVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE 89 (441)
Q Consensus 10 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~ 89 (441)
..++|..+...+.. .--.|++.|+.|+||||++||++-.++||.|.+.||.|-.++.=. .+...
T Consensus 94 ~~~~l~~i~~~l~r-------------~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Vega---dG~e~ 157 (749)
T KOG0448|consen 94 YEDKLDAIDEVLAR-------------RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGA---DGAEA 157 (749)
T ss_pred HHHHHHHHHHHHhh-------------cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeeccc---CCcce
Confidence 34555555555543 344899999999999999999999999999999999998776422 11111
Q ss_pred hHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCC------CCcEEEeCCCCCcCccCCCCccHH
Q 013508 90 YAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNV------VNLTLIDLPGLTKVAVEGQPDTIV 163 (441)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~------~~l~lvDtPGi~~~~~~~~~~~~~ 163 (441)
+....+. ..-.|...+...+..-... +. ....-.+.|+.|+. -++.++|.||+.-.+. .
T Consensus 158 vl~~~~s--~ek~d~~ti~~~~haL~~~-----~~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------~- 222 (749)
T KOG0448|consen 158 VLATEGS--EEKIDMKTINQLAHALKPD-----KD-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------L- 222 (749)
T ss_pred eeccCCC--cccccHHHHhHHHHhcCcc-----cc-cCcceEEEEEecCccchhhhccceeccCCCCCCchh------h-
Confidence 1111111 1111111111111100000 00 11233455776665 3899999999976421 1
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHH
Q 013508 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNAL 227 (441)
Q Consensus 164 ~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~ 227 (441)
...+.++-.+.|..|+|+.+-+ .+ +..+.++...+......++++.||+|......+..
T Consensus 223 ---tswid~~cldaDVfVlV~NaEn-tl-t~sek~Ff~~vs~~KpniFIlnnkwDasase~ec~ 281 (749)
T KOG0448|consen 223 ---TSWIDSFCLDADVFVLVVNAEN-TL-TLSEKQFFHKVSEEKPNIFILNNKWDASASEPECK 281 (749)
T ss_pred ---hHHHHHHhhcCCeEEEEecCcc-Hh-HHHHHHHHHHhhccCCcEEEEechhhhhcccHHHH
Confidence 3667788888998888775543 33 45556677777766667788889999987665543
No 146
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.23 E-value=1.2e-10 Score=104.14 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh-C---CCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~-~---~~~~r~i~Vl 214 (441)
...+.++||||.... +.+...|+++++++|++++.++.+- -..+.+....+ . ..+.|+++|.
T Consensus 56 ~~~l~l~D~~G~~~~-------------~~~~~~~~~~ad~ii~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 121 (175)
T smart00177 56 NISFTVWDVGGQDKI-------------RPLWRHYYTNTQGLIFVVDSNDRDR-IDEAREELHRMLNEDELRDAVILVFA 121 (175)
T ss_pred CEEEEEEECCCChhh-------------HHHHHHHhCCCCEEEEEEECCCHHH-HHHHHHHHHHHhhCHhhcCCcEEEEE
Confidence 357899999997442 4678889999999999887654321 12222222222 1 1357899999
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||.|+.+.
T Consensus 122 NK~Dl~~~ 129 (175)
T smart00177 122 NKQDLPDA 129 (175)
T ss_pred eCcCcccC
Confidence 99998643
No 147
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.21 E-value=1.7e-10 Score=103.75 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=45.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh-CC---CCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-DP---TGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~-~~---~~~r~i~Vl 214 (441)
...+.++||||.... +.+...|++.+|++|++++.++..- -..+.+.+..+ .. ...|+++|.
T Consensus 60 ~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~iI~v~D~t~~~s-~~~~~~~l~~~~~~~~~~~~piilv~ 125 (182)
T PTZ00133 60 NLKFTMWDVGGQDKL-------------RPLWRHYYQNTNGLIFVVDSNDRER-IGDAREELERMLSEDELRDAVLLVFA 125 (182)
T ss_pred CEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhCHhhcCCCEEEEE
Confidence 357899999997432 5678889999999999887654321 11122222222 21 357899999
Q ss_pred ccCCCCC
Q 013508 215 TKLDLMD 221 (441)
Q Consensus 215 tK~D~~~ 221 (441)
||.|+.+
T Consensus 126 NK~Dl~~ 132 (182)
T PTZ00133 126 NKQDLPN 132 (182)
T ss_pred eCCCCCC
Confidence 9999864
No 148
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.21 E-value=8.8e-11 Score=103.22 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh-C---CCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV-D---PTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~-~---~~~~r~i~Vl 214 (441)
...+.++||||.... ..+...|++.+|++|++++..+.+- -..+.+....+ . ....|.++|.
T Consensus 43 ~~~~~l~D~~G~~~~-------------~~~~~~~~~~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~~~~~~piilv~ 108 (159)
T cd04150 43 NISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRER-IGEAREELQRMLNEDELRDAVLLVFA 108 (159)
T ss_pred CEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHhcHHhcCCCEEEEE
Confidence 457899999997432 4677889999999988886644321 12222222222 1 1357999999
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||.|+.+.
T Consensus 109 NK~Dl~~~ 116 (159)
T cd04150 109 NKQDLPNA 116 (159)
T ss_pred ECCCCCCC
Confidence 99998643
No 149
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.21 E-value=9.1e-11 Score=106.51 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH--HHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--DAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~--~~l~l~~~~~~~~~r~i~VltK 216 (441)
...+++|||||... + ++. ....+..+|+++++++.. .+...+ +.+.++.. .+.+.++|+||
T Consensus 67 ~~~~~i~DtpG~~~---------~---~~~-~~~~~~~~d~vi~VvD~~-~~~~~~~~~~~~~~~~---~~~~~iiv~NK 129 (192)
T cd01889 67 NLQITLVDCPGHAS---------L---IRT-IIGGAQIIDLMLLVVDAT-KGIQTQTAECLVIGEI---LCKKLIVVLNK 129 (192)
T ss_pred CceEEEEECCCcHH---------H---HHH-HHHHHhhCCEEEEEEECC-CCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 46899999999732 1 122 223455678888877643 322112 22333322 36799999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+...
T Consensus 130 ~Dl~~~ 135 (192)
T cd01889 130 IDLIPE 135 (192)
T ss_pred cccCCH
Confidence 999854
No 150
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.21 E-value=2.3e-10 Score=106.31 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=59.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc-CCCeEEEEeccCccc-cc-cHHHHHHHHHhC-CCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQD-IA-TSDAMKLAREVD-PTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~-~~~~r~i~Vl 214 (441)
...+.|+||||... .+...++. .+|++|++++..+.. +. ...++..+.... ..+.|+|+|.
T Consensus 49 ~~~l~i~Dt~G~~~---------------~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~ 113 (221)
T cd04148 49 ESTLVVIDHWEQEM---------------WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVG 113 (221)
T ss_pred EEEEEEEeCCCcch---------------HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 35789999999841 11223444 788888877554421 11 122233333332 2468999999
Q ss_pred ccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 215 TKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
||+|+........+............|+.+.+....+++..+..+....
T Consensus 114 NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 114 NKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999875432111111101111234567776666666666655555444
No 151
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.21 E-value=1.6e-10 Score=121.26 Aligned_cols=119 Identities=20% Similarity=0.319 Sum_probs=77.3
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
+....|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~i-------------------------------------- 124 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHI-------------------------------------- 124 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecc--------------------------------------
Confidence 345679999999999999999999998876322211111110
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
+ .. .+...+...++||||||.... ..+..++....|.+|+++. +..+. .
T Consensus 125 ------g--------~~--~v~~~~~~~i~~iDTPGhe~F-------------~~~r~rga~~aDiaILVVd-a~dgv-~ 173 (587)
T TIGR00487 125 ------G--------AY--HVENEDGKMITFLDTPGHEAF-------------TSMRARGAKVTDIVVLVVA-ADDGV-M 173 (587)
T ss_pred ------e--------EE--EEEECCCcEEEEEECCCCcch-------------hhHHHhhhccCCEEEEEEE-CCCCC-C
Confidence 0 00 122222237999999997543 2455667788998888774 44333 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
....+.++.....+.|+|+++||+|+..
T Consensus 174 ~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 174 PQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred HhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 3334444555556789999999999864
No 152
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.20 E-value=2.1e-10 Score=103.73 Aligned_cols=158 Identities=19% Similarity=0.195 Sum_probs=91.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.+-+|+|+|+.++|||||+.++.+..+ +.... .|..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~-~~~~~-~t~~------------------------------------------ 40 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST-ESPYG-YNMG------------------------------------------ 40 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC-CCCCC-Ccce------------------------------------------
Confidence 456899999999999999999998665 11110 0100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
..+. ...+.+.+ ....+.|+||||.... ..+...|++.++++|++++..+.. +. ..
T Consensus 41 ------~~~~--~~~i~~~~-~~~~l~iwDt~G~~~~-------------~~l~~~~~~~ad~illVfD~t~~~Sf~~~~ 98 (189)
T cd04121 41 ------IDYK--TTTILLDG-RRVKLQLWDTSGQGRF-------------CTIFRSYSRGAQGIILVYDITNRWSFDGID 98 (189)
T ss_pred ------eEEE--EEEEEECC-EEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0000 01111211 2357899999997442 467788999999998888654421 11 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
.+++.+....+ +.|.|+|.||.|+........+..+.........|+.+.+..+.+++..+..+..
T Consensus 99 ~w~~~i~~~~~-~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~ 164 (189)
T cd04121 99 RWIKEIDEHAP-GVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164 (189)
T ss_pred HHHHHHHHhCC-CCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence 23333443333 6899999999999653221111111111122345777777766666665555544
No 153
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.19 E-value=2.3e-10 Score=98.88 Aligned_cols=29 Identities=24% Similarity=0.473 Sum_probs=25.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (441)
++|+++|.++||||||+|+|++.. +|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~ 30 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEY 30 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcC
Confidence 579999999999999999999987 45444
No 154
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=1.9e-11 Score=120.40 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=100.0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec
Q 013508 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (441)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (441)
+.++..++.+.+..+..+.+.-....+++++..+.+++.|||-||+||||++|.++..+.---.
T Consensus 134 lgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqp---------------- 197 (620)
T KOG1490|consen 134 LGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQP---------------- 197 (620)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCC----------------
Confidence 4455555555555555444333334578888889999999999999999999998876641111
Q ss_pred CCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHH
Q 013508 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (441)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~ 163 (441)
..|+...+.+.-.......+.++||||+.+.+ .+..
T Consensus 198 ---------------------------------------YaFTTksL~vGH~dykYlrwQViDTPGILD~p-----lEdr 233 (620)
T KOG1490|consen 198 ---------------------------------------YAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP-----EEDR 233 (620)
T ss_pred ---------------------------------------cccccchhhhhhhhhheeeeeecCCccccCcc-----hhhh
Confidence 11222222222334455688999999998864 3333
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCcc--ccccHHHHHHHHHhCCC--CCcEEEEeccCCCCCCc
Q 013508 164 EDIESMVRSYVEKPNSVILAISPANQ--DIATSDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (441)
Q Consensus 164 ~~i~~~v~~yi~~~~~iil~v~~a~~--~~~~~~~l~l~~~~~~~--~~r~i~VltK~D~~~~~ 223 (441)
..++-..-..+.+-.+.||.+.+-+. +..-.+-+++...+.|. ++++|+|+||+|.+.+.
T Consensus 234 N~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 234 NIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred hHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 33444444455553344444443221 34445556677777774 78999999999999764
No 155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.19 E-value=2.6e-10 Score=101.35 Aligned_cols=115 Identities=20% Similarity=0.351 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+++|+++||||||+++|.|..+ +. ..|+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~------~~~t---------------------------------------- 45 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDI-SH------ITPT---------------------------------------- 45 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCC-cc------cCCC----------------------------------------
Confidence 356899999999999999999999754 10 1110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~ 194 (441)
.++... . +.. ....+.++|+||.... ..++..+++.+++++++++..+..... .
T Consensus 46 ------~g~~~~--~--i~~-~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~ 101 (173)
T cd04155 46 ------QGFNIK--T--VQS-DGFKLNVWDIGGQRAI-------------RPYWRNYFENTDCLIYVIDSADKKRLEEAG 101 (173)
T ss_pred ------CCcceE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhcCCCEEEEEEeCCCHHHHHHHH
Confidence 000000 1 111 2357899999997432 456777888999888887654421111 1
Q ss_pred HHH-HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAM-KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l-~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+ .+.+.....+.|+++|+||+|+.+.
T Consensus 102 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 102 AELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 111 1222223346899999999998754
No 156
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.19 E-value=8.4e-11 Score=104.60 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||.... ..+...+++.++++|++++..+.. +.. ..++..++... .+.|+++|.||
T Consensus 46 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK 111 (174)
T smart00174 46 VELGLWDTAGQEDY-------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTK 111 (174)
T ss_pred EEEEEEECCCCccc-------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecC
Confidence 46899999997542 234556788899888887654321 111 11233333333 36899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+..+.
T Consensus 112 ~Dl~~~~ 118 (174)
T smart00174 112 LDLREDK 118 (174)
T ss_pred hhhhhCh
Confidence 9987543
No 157
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.19 E-value=9.3e-11 Score=124.81 Aligned_cols=161 Identities=16% Similarity=0.288 Sum_probs=92.8
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
+....|.|+|+|..++|||||+++|.+..+.....+..|..
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~--------------------------------------- 280 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQK--------------------------------------- 280 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccc---------------------------------------
Confidence 44678999999999999999999999876521111111110
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
+....+.+.. ......++||||||.... ..+...++..+|.+||+|. +..+. .
T Consensus 281 -----------i~~~~v~~~~-~~~~~kItfiDTPGhe~F-------------~~mr~rg~~~aDiaILVVD-A~dGv-~ 333 (742)
T CHL00189 281 -----------IGAYEVEFEY-KDENQKIVFLDTPGHEAF-------------SSMRSRGANVTDIAILIIA-ADDGV-K 333 (742)
T ss_pred -----------cceEEEEEEe-cCCceEEEEEECCcHHHH-------------HHHHHHHHHHCCEEEEEEE-CcCCC-C
Confidence 0001111111 123468999999997432 4666778888998888874 44333 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcC-cHHHHHcCc-ccccC----CCeEEEEeCChhhhccCCcHHH
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLEGR-SYRLQ----HPWVGIVNRSQADINRNIDMIV 260 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~-~~~~~l~~~-~~~l~----~g~~~v~~~s~~~~~~~~~~~~ 260 (441)
....+.++.+...+.|+|+|+||+|+..... .....+... ..+.. .+++.+.+.++.++..+++.+.
T Consensus 334 ~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~ 406 (742)
T CHL00189 334 PQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETIL 406 (742)
T ss_pred hhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhh
Confidence 2333344455556889999999999875321 122222111 11111 2355666666556655554443
No 158
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.19 E-value=2.5e-10 Score=109.39 Aligned_cols=137 Identities=18% Similarity=0.302 Sum_probs=76.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccccc-ccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV-TRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~-Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.|+|+|..|+|||||+|+|++..+.+...... +..+.
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~------------------------------------------ 43 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHI------------------------------------------ 43 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCccccCCCCcccccc------------------------------------------
Confidence 69999999999999999999998754432211 00000
Q ss_pred cCCCCCcCCcceEEEEecCC-CCCcEEEeCCCCCcCccC-CCCccHHHHHHHHHHHhh------------c--CCCeEEE
Q 013508 119 TGKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYV------------E--KPNSVIL 182 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~-~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi------------~--~~~~iil 182 (441)
. ...+.......+...+ ...+++|||||+.+.... ..-..+...+++....|+ . ..+++++
T Consensus 44 -~--~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly 120 (276)
T cd01850 44 -D--KTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLY 120 (276)
T ss_pred -C--CceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEE
Confidence 0 0000001111122111 247999999999764321 011112222222222222 2 2456666
Q ss_pred EeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 183 ~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.+...++ ....+++++.+.. +.++|+|+||+|++.+.
T Consensus 121 ~i~~~~~~l-~~~D~~~lk~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 121 FIEPTGHGL-KPLDIEFMKRLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred EEeCCCCCC-CHHHHHHHHHHhc-cCCEEEEEECCCcCCHH
Confidence 666554455 3334667777764 78999999999998643
No 159
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.19 E-value=1.6e-10 Score=104.25 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=69.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
.|+|+|++++|||||++++++..+ +... .|+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~-~~~~-----~~t~~~---------------------------------------- 35 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF-PEEY-----VPTVFE---------------------------------------- 35 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC-CCCC-----CCeeee----------------------------------------
Confidence 699999999999999999998875 3221 121100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
.+ ...+.........+.|+||||.... ..+...|++.+|++|++++..+.. +.. ..+
T Consensus 36 ----~~---~~~i~~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~ 95 (187)
T cd04132 36 ----NY---VTNIQGPNGKIIELALWDTAGQEEY-------------DRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKW 95 (187)
T ss_pred ----ee---EEEEEecCCcEEEEEEEECCCchhH-------------HHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0001111122346889999996432 355666888999888887654321 111 112
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+...+... .+.|.|+|.||.|+...
T Consensus 96 ~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 96 FPEVNHFC-PGTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHHHHhC-CCCCEEEEEeChhhhhC
Confidence 22223222 36799999999998753
No 160
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.18 E-value=4.6e-10 Score=100.90 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=72.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-.+|+++|.++||||||++.+....+ +. ..|+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~-~~------~~pt~---------------------------------------- 49 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPTI---------------------------------------- 49 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC-cc------ccCCc----------------------------------------
Confidence 45899999999999999999986554 21 11210
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
| +. ... +.. ....+.++|+||... .+.+...|+++++++|++++..+.+- -..+.
T Consensus 50 --g----~~--~~~--~~~-~~~~~~i~D~~Gq~~-------------~~~~~~~~~~~a~~iI~V~D~s~~~s-~~~~~ 104 (181)
T PLN00223 50 --G----FN--VET--VEY-KNISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRDR-VVEAR 104 (181)
T ss_pred --c----ee--EEE--EEE-CCEEEEEEECCCCHH-------------HHHHHHHHhccCCEEEEEEeCCcHHH-HHHHH
Confidence 0 00 001 111 235789999999632 25778899999999999887654321 12222
Q ss_pred HHHHHh-C---CCCCcEEEEeccCCCCCC
Q 013508 198 KLAREV-D---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~-~---~~~~r~i~VltK~D~~~~ 222 (441)
..+..+ . ..+.|.++|.||.|+.+.
T Consensus 105 ~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 105 DELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 222222 2 136799999999998654
No 161
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.18 E-value=1.6e-10 Score=102.27 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=59.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||||.... ..+...|+..+|++|++++..+..- . ...++..++...+ +.|.++|.||+
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEKF-------------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEEECCCChhh-------------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 57889999997542 2344567788998888876543211 0 0122333333333 68999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
|+........ ... ........|+.+.+.+..+++..+..+..
T Consensus 115 Dl~~~~~~~~-~~~-~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 115 DIKDRKVKAK-QIT-FHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred hcccccCCHH-HHH-HHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 9874322111 110 00112234677766666555555544443
No 162
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.18 E-value=1.1e-10 Score=111.30 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=48.7
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
...+++||||||..+. ...+..++...|++|++|+ +..+. ......+++.+...+.|.++++||+
T Consensus 62 ~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVVD-a~~g~-~~~t~~~~~~~~~~~~p~ivviNK~ 126 (270)
T cd01886 62 KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFD-AVAGV-EPQTETVWRQADRYNVPRIAFVNKM 126 (270)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHHcCEEEEEEE-CCCCC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3568999999998542 2346778888998888775 44444 2233345555556678999999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 127 D~~~ 130 (270)
T cd01886 127 DRTG 130 (270)
T ss_pred CCCC
Confidence 9874
No 163
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.18 E-value=1.4e-10 Score=99.13 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=46.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH----HHHHHhCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM----KLAREVDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l----~l~~~~~~~~~r~i~Vl 214 (441)
...++++|+||.... ......++...+.++++++..+. ....... .........+.++++|+
T Consensus 44 ~~~~~l~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ivv~ 109 (157)
T cd00882 44 KVKLQIWDTAGQERF-------------RSLRRLYYRGADGIILVYDVTDR-ESFENVKEWLLLILINKEGENIPIILVG 109 (157)
T ss_pred EEEEEEEecCChHHH-------------HhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhhccCCCcEEEEE
Confidence 457899999998653 23336677888988887755432 2122211 12333455689999999
Q ss_pred ccCCCCCCcC
Q 013508 215 TKLDLMDKGT 224 (441)
Q Consensus 215 tK~D~~~~~~ 224 (441)
||+|+.....
T Consensus 110 nk~D~~~~~~ 119 (157)
T cd00882 110 NKIDLPEERV 119 (157)
T ss_pred eccccccccc
Confidence 9999986543
No 164
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.18 E-value=1.2e-10 Score=107.93 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||||.... ..+...|++.++++|++++..+... . ...++..++... .+.++++|.||+
T Consensus 62 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~ 127 (219)
T PLN03071 62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127 (219)
T ss_pred EEEEEEECCCchhh-------------hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEch
Confidence 57899999997542 3566778899999888876554321 0 112333333333 368999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
|+.........+ . ........|+.+.+.+..++...+.++..
T Consensus 128 Dl~~~~v~~~~~-~-~~~~~~~~~~e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 128 DVKNRQVKAKQV-T-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred hhhhccCCHHHH-H-HHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 986432111111 1 01112345666666665555555544443
No 165
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.18 E-value=3.1e-10 Score=118.89 Aligned_cols=133 Identities=18% Similarity=0.241 Sum_probs=77.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..|.|+++|++++|||||+|+|+|..+.....+..|+..-...... .
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~---------------------------------~ 49 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPM---------------------------------D 49 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeee---------------------------------c
Confidence 5799999999999999999999998764433343443211000000 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
...+. .....-..++. ...++++||||||.... ..+...++..+|+++++++. ..+. ....
T Consensus 50 ~~~~~---~~~~~~~~~v~-~~~~~l~~iDTpG~e~f-------------~~l~~~~~~~aD~~IlVvD~-~~g~-~~qt 110 (590)
T TIGR00491 50 VIEGI---CGDLLKKFKIR-LKIPGLLFIDTPGHEAF-------------TNLRKRGGALADLAILIVDI-NEGF-KPQT 110 (590)
T ss_pred ccccc---ccccccccccc-cccCcEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEEC-CcCC-CHhH
Confidence 00000 00000000111 11246999999997432 35566678889988887754 3332 2222
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.+.+..+...+.|.++|+||+|+.+
T Consensus 111 ~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 111 QEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHcCCCEEEEEECCCccc
Confidence 3333444445789999999999974
No 166
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.18 E-value=1.7e-10 Score=112.28 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=63.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcC
Q 013508 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTG 120 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g 120 (441)
|++||.+|+|||||+|+|++..+-+.....||..|+.-........... +.+....
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~------------------------r~~~~~~ 56 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCK------------------------ELGVSCN 56 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCch------------------------hhhhhhc
Confidence 5899999999999999999988655556678888865221110000000 0000000
Q ss_pred CCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 013508 121 KTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (441)
Q Consensus 121 ~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a 187 (441)
...+ . .+.+....++.++||||+...... ...+.+...++++++|+++++|...
T Consensus 57 ~~~~-----~--~~~~~~~v~i~l~D~aGlv~ga~~------~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 57 PRYG-----K--CIDGKRYVPVELIDVAGLVPGAHE------GKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred cccc-----c--cccCcCcceEEEEECCCCCCCccc------hhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0000 0 011223346999999999764321 1223355567799999999988654
No 167
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.17 E-value=1.5e-10 Score=121.73 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCc-EEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGER-TFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r-~i~VltK 216 (441)
..++|||+||..+ . ......++...|.++++|+. +.+.. +.+.+.+++ ..+.+ .|+|+||
T Consensus 50 ~~v~~iDtPGhe~------------f-~~~~~~g~~~aD~aILVVDa-~~G~~~qT~ehl~il~---~lgi~~iIVVlNK 112 (581)
T TIGR00475 50 YRLGFIDVPGHEK------------F-ISNAIAGGGGIDAALLVVDA-DEGVMTQTGEHLAVLD---LLGIPHTIVVITK 112 (581)
T ss_pred EEEEEEECCCHHH------------H-HHHHHhhhccCCEEEEEEEC-CCCCcHHHHHHHHHHH---HcCCCeEEEEEEC
Confidence 6789999999632 1 23345667789988887754 43331 222333333 34666 9999999
Q ss_pred CCCCCCcCc------HHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 217 LDLMDKGTN------ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 217 ~D~~~~~~~------~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
+|+.+.... ..+++.+........++.++..++.++......+...
T Consensus 113 ~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l 164 (581)
T TIGR00475 113 ADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNL 164 (581)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHH
Confidence 999864321 1122221111112456667666666665555444433
No 168
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.17 E-value=9.9e-11 Score=108.68 Aligned_cols=75 Identities=23% Similarity=0.265 Sum_probs=48.9
Q ss_pred EecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh-cCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEE
Q 013508 134 IYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV-EKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFG 212 (441)
Q Consensus 134 i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi-~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~ 212 (441)
++......++||||||..+. .+.++.... ..+|.+++++ ++..+. .....+++..+...+.|.++
T Consensus 78 ~~~~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVv-da~~g~-~~~d~~~l~~l~~~~ip~iv 143 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVV-AANAGI-IGMTKEHLGLALALNIPVFV 143 (224)
T ss_pred eeeeCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEE-ECCCCC-cHHHHHHHHHHHHcCCCEEE
Confidence 33444568999999997432 234443332 2577766665 455554 34445566666677899999
Q ss_pred EeccCCCCCC
Q 013508 213 VLTKLDLMDK 222 (441)
Q Consensus 213 VltK~D~~~~ 222 (441)
|+||+|++++
T Consensus 144 vvNK~D~~~~ 153 (224)
T cd04165 144 VVTKIDLAPA 153 (224)
T ss_pred EEECccccCH
Confidence 9999999754
No 169
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.17 E-value=1.9e-10 Score=97.58 Aligned_cols=24 Identities=21% Similarity=0.576 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+|++||+.+||||||+++|.|.+.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~ 26 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI 26 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC
Confidence 699999999999999999999875
No 170
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.16 E-value=4.6e-10 Score=103.92 Aligned_cols=111 Identities=21% Similarity=0.244 Sum_probs=69.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.+++|||||++++++..| +. . ..|-...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f-~~-~-~~Tig~~------------------------------------------- 35 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRF-KD-T-VSTVGGA------------------------------------------- 35 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CC-C-CCccceE-------------------------------------------
Confidence 589999999999999999999876 21 1 1111110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH-HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-DAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~-~~l 197 (441)
+ . .......++.||||||.... ..+...|++.++++|++++..+.. +..- .++
T Consensus 36 -----~----~---~~~~~~~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~ 90 (220)
T cd04126 36 -----F----Y---LKQWGPYNISIWDTAGREQF-------------HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRF 90 (220)
T ss_pred -----E----E---EEEeeEEEEEEEeCCCcccc-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 0 0 00012346899999997542 356677899999988887654321 1111 112
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..+......+.++|+|.||+|+.+
T Consensus 91 ~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 91 LGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHhcCCCCcEEEEEECccccc
Confidence 222223334678999999999975
No 171
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.15 E-value=2.4e-10 Score=102.81 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=45.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.++||+|.... ..+...|++++++++++++..+...-. ..++..++...+...+ |+|.||+
T Consensus 49 ~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~ 114 (182)
T cd04128 49 ITFSIWDLGGQREF-------------INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKY 114 (182)
T ss_pred EEEEEEeCCCchhH-------------HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEch
Confidence 47899999997432 456778899999988888654432111 1344444444454455 7899999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 115 Dl~~ 118 (182)
T cd04128 115 DLFA 118 (182)
T ss_pred hccc
Confidence 9863
No 172
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.15 E-value=5.3e-10 Score=105.43 Aligned_cols=106 Identities=12% Similarity=0.112 Sum_probs=57.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHh------------CCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREV------------DPTG 207 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~------------~~~~ 207 (441)
..+.|+||||.... ..+...|+..+|++|++++..+.+. -+....+..++ ...+
T Consensus 48 ~~l~I~Dt~G~~~~-------------~~~~~~~~~~ad~iIlVfdv~~~~S-f~~i~~~~~~I~~~k~~~~~~~~~~~~ 113 (247)
T cd04143 48 YQLDILDTSGNHPF-------------PAMRRLSILTGDVFILVFSLDNRES-FEEVCRLREQILETKSCLKNKTKENVK 113 (247)
T ss_pred EEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEeCCCHHH-HHHHHHHHHHHHHhhcccccccccCCC
Confidence 57889999997442 2455567788998888775543221 11122222222 1236
Q ss_pred CcEEEEeccCCCCCCcC-cHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 208 ERTFGVLTKLDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 208 ~r~i~VltK~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
.|+|+|.||+|+..... ...++.+-........|+.+.+.+..+++..+..+
T Consensus 114 ~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L 166 (247)
T cd04143 114 IPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRAL 166 (247)
T ss_pred CcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 89999999999975322 12121110001112346667666655555544443
No 173
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.15 E-value=3.6e-10 Score=100.41 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+..+|+++|++|+|||||++++++..|-|..... |-.+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~-T~~~----------------------------------------- 40 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSP-TIKP----------------------------------------- 40 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCC-ccCc-----------------------------------------
Confidence 4568999999999999999999998762122111 1100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+.... +.+.+ ....+.++|++|-... ..+...|+.++|+++++++..+. ..-...
T Consensus 41 -------~~~~~~--~~~~~-~~~~l~~~d~~g~~~~-------------~~~~~~~~~~~d~~llv~d~~~~-~s~~~~ 96 (169)
T cd01892 41 -------RYAVNT--VEVYG-QEKYLILREVGEDEVA-------------ILLNDAELAACDVACLVYDSSDP-KSFSYC 96 (169)
T ss_pred -------ceEEEE--EEECC-eEEEEEEEecCCcccc-------------cccchhhhhcCCEEEEEEeCCCH-HHHHHH
Confidence 000001 11211 2246789999997542 24556678899988888755332 111122
Q ss_pred HHHHHHhC-CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVD-PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~-~~~~r~i~VltK~D~~~~ 222 (441)
..+.+.+. ..+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 97 AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred HHHHHHhccCCCCeEEEEEEccccccc
Confidence 23444442 336899999999998654
No 174
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.14 E-value=1e-10 Score=109.61 Aligned_cols=151 Identities=21% Similarity=0.287 Sum_probs=85.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.+.|.+||-||||||||||+|+..+==--.+..+|-+|..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~i---------------------------------------- 235 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHI---------------------------------------- 235 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeecccc----------------------------------------
Confidence 4668899999999999999999875212244566666632
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-c-cccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-D-IATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~-~~~~~ 195 (441)
| .+...+..++++-|+||++..+..+ .-+ ---..+.|+.++.+++||+-++. . ...+.
T Consensus 236 --G------------~v~yddf~q~tVADiPGiI~GAh~n--kGl----G~~FLrHiER~~~l~fVvD~s~~~~~~p~~~ 295 (366)
T KOG1489|consen 236 --G------------TVNYDDFSQITVADIPGIIEGAHMN--KGL----GYKFLRHIERCKGLLFVVDLSGKQLRNPWQQ 295 (366)
T ss_pred --c------------eeeccccceeEeccCcccccccccc--Ccc----cHHHHHHHHhhceEEEEEECCCcccCCHHHH
Confidence 2 1333344569999999999865432 111 12234556678866666654332 1 11122
Q ss_pred HHHHHHHhC-----CCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCC-eEEEEeCChhh
Q 013508 196 AMKLAREVD-----PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHP-WVGIVNRSQAD 251 (441)
Q Consensus 196 ~l~l~~~~~-----~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g-~~~v~~~s~~~ 251 (441)
...|..++. -..++.++|+||+|+.+...+. +......++.+ .+++++.++.+
T Consensus 296 ~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 296 LQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred HHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEEEeeeccccc
Confidence 222333332 1256799999999986433222 11112233333 45555555533
No 175
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.14 E-value=2.5e-10 Score=102.07 Aligned_cols=115 Identities=19% Similarity=0.188 Sum_probs=71.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|+.++|||||++++++..| |....+ |-..
T Consensus 3 ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~p-t~~~-------------------------------------------- 36 (175)
T cd01874 3 KCVVVGDGAVGKTCLLISYTTNKF-PSEYVP-TVFD-------------------------------------------- 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCCCC-ceee--------------------------------------------
Confidence 699999999999999999998765 322211 1100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
.+ ...+.+. .....+.|+||||.... ..+...|+++++++|++++..+.+ +.. ..+
T Consensus 37 ----~~---~~~~~~~-~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w 95 (175)
T cd01874 37 ----NY---AVTVMIG-GEPYTLGLFDTAGQEDY-------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 95 (175)
T ss_pred ----ee---EEEEEEC-CEEEEEEEEECCCccch-------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111121 12247889999998543 345566888999988888654432 211 123
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+..++...+ +.|+|+|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (175)
T cd01874 96 VPEITHHCP-KTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHhCC-CCCEEEEEECHhhhhC
Confidence 333433333 5899999999998654
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.13 E-value=3.7e-10 Score=121.30 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=91.0
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
+....|.|+|+|+.++|||||+++|.+.++.....+-.|...
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~i-------------------------------------- 327 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHI-------------------------------------- 327 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeec--------------------------------------
Confidence 346789999999999999999999988765211111111000
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
+ ... +... ...++||||||.... ..+...++...|++||+|. +..+. .
T Consensus 328 ------g--------a~~--v~~~-~~~ItfiDTPGhe~F-------------~~m~~rga~~aDiaILVVd-AddGv-~ 375 (787)
T PRK05306 328 ------G--------AYQ--VETN-GGKITFLDTPGHEAF-------------TAMRARGAQVTDIVVLVVA-ADDGV-M 375 (787)
T ss_pred ------c--------EEE--EEEC-CEEEEEEECCCCccc-------------hhHHHhhhhhCCEEEEEEE-CCCCC-C
Confidence 0 011 2111 357999999997543 3455677788898888774 44333 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcC-cHHHHHc-Cccccc----CCCeEEEEeCChhhhccCCcHH
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT-NALDVLE-GRSYRL----QHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~-~~~~~l~-~~~~~l----~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
......++.+...+.|+|+|+||+|+..... .....+. ...... ...++++.+.+..+++.+++.+
T Consensus 376 ~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I 447 (787)
T PRK05306 376 PQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAI 447 (787)
T ss_pred HhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhh
Confidence 3333344455556789999999999964321 1111111 111111 1345666666666665555444
No 177
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.12 E-value=2.6e-10 Score=106.87 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....++||||||..+. ...+..+++..|++|++++.. .+. ......+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDTPG~~~f-------------~~~~~~~l~~aD~~IlVvd~~-~g~-~~~~~~~~~~~~~~~~P~iivvNK~ 126 (237)
T cd04168 62 EDTKVNLIDTPGHMDF-------------IAEVERSLSVLDGAILVISAV-EGV-QAQTRILWRLLRKLNIPTIIFVNKI 126 (237)
T ss_pred CCEEEEEEeCCCccch-------------HHHHHHHHHHhCeEEEEEeCC-CCC-CHHHHHHHHHHHHcCCCEEEEEECc
Confidence 3468999999999653 245667888899888887544 333 2223334444445688999999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 127 D~~~ 130 (237)
T cd04168 127 DRAG 130 (237)
T ss_pred cccC
Confidence 9874
No 178
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.12 E-value=5.9e-10 Score=114.82 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..|+|+|.+|+||||++|+|+|...+.++. ..+|.....+.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~-------------------------------------- 160 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIE-------------------------------------- 160 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEE--------------------------------------
Confidence 379999999999999999999998655543 12333221110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCcc---ccc
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQ---DIA 192 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iil~v~~a~~---~~~ 192 (441)
...+...+.+|||||+..... +....+.+...+..++.. ++. ||+|..... +..
T Consensus 161 -----------------~~idG~~L~VIDTPGL~dt~~---dq~~neeILk~Ik~~Lsk~gpDV-VLlV~RLd~~~~D~e 219 (763)
T TIGR00993 161 -----------------GLVQGVKIRVIDTPGLKSSAS---DQSKNEKILSSVKKFIKKNPPDI-VLYVDRLDMQTRDSN 219 (763)
T ss_pred -----------------EEECCceEEEEECCCCCcccc---chHHHHHHHHHHHHHHhcCCCCE-EEEEEeCCCccccHH
Confidence 011345799999999987532 222334455666667764 664 455544321 222
Q ss_pred cHHHHHHHHHhCC--CCCcEEEEeccCCCCCC
Q 013508 193 TSDAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 193 ~~~~l~l~~~~~~--~~~r~i~VltK~D~~~~ 222 (441)
...+++.+..+-. .-.++|+|+|+.|..++
T Consensus 220 D~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 220 DLPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 2234544444322 24789999999999964
No 179
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.12 E-value=5.4e-10 Score=99.44 Aligned_cols=116 Identities=16% Similarity=0.156 Sum_probs=67.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|+++||||||++++.+..+ |..... |-...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~~~~~~-t~~~~------------------------------------------ 37 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-PEVYVP-TVFEN------------------------------------------ 37 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC-ccccc------------------------------------------
Confidence 5799999999999999999998765 321111 10000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc--HH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SD 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~--~~ 195 (441)
+ ...+.+.+ ....+.++||||.... ..+...++...|+++++.+..+. ++.+ ..
T Consensus 38 ------~---~~~~~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~ 94 (175)
T cd01870 38 ------Y---VADIEVDG-KQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPEK 94 (175)
T ss_pred ------e---EEEEEECC-EEEEEEEEeCCCchhh-------------hhccccccCCCCEEEEEEECCCHHHHHHHHHH
Confidence 0 00111221 2346899999997432 22333467788888766543322 1111 11
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..++... .+.|.++|.||+|+.+.
T Consensus 95 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 95 WTPEVKHFC-PNVPIILVGNKKDLRND 120 (175)
T ss_pred HHHHHHhhC-CCCCEEEEeeChhcccC
Confidence 222333332 36899999999998754
No 180
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.12 E-value=3.7e-10 Score=103.47 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..++||||||... +...+..++...|.++++++...... .+.+.+..+... ...+.++|+||+
T Consensus 83 ~~i~~iDtPG~~~-------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHEI-------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChHH-------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEch
Confidence 5789999999521 12344555667888888776543222 122333333322 124689999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+.+.
T Consensus 148 Dl~~~ 152 (203)
T cd01888 148 DLVKE 152 (203)
T ss_pred hccCH
Confidence 99753
No 181
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.11 E-value=3.1e-10 Score=101.08 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||.... ..+...|++.+|++|++++..+.. +.. ..++..++... .+.++++|.||
T Consensus 48 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK 113 (173)
T cd04130 48 VRLQLCDTAGQDEF-------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQ 113 (173)
T ss_pred EEEEEEECCCChhh-------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeC
Confidence 46789999998442 234455788899888887554322 211 12333333322 35899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+...
T Consensus 114 ~Dl~~~ 119 (173)
T cd04130 114 ADLRTD 119 (173)
T ss_pred hhhccC
Confidence 998654
No 182
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.10 E-value=8.4e-10 Score=105.20 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=47.5
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....+.||||||..+. ...+..+++..|++|+++++. .+.. .....+.+.....+.|.++++||+
T Consensus 69 ~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvda~-~g~~-~~~~~i~~~~~~~~~P~iivvNK~ 133 (267)
T cd04169 69 RDCVINLLDTPGHEDF-------------SEDTYRTLTAVDSAVMVIDAA-KGVE-PQTRKLFEVCRLRGIPIITFINKL 133 (267)
T ss_pred CCEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECC-CCcc-HHHHHHHHHHHhcCCCEEEEEECC
Confidence 4568999999998542 234567788899888877553 3332 222234444455678999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 134 D~~~a 138 (267)
T cd04169 134 DREGR 138 (267)
T ss_pred ccCCC
Confidence 98654
No 183
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.10 E-value=9.5e-10 Score=100.75 Aligned_cols=117 Identities=16% Similarity=0.271 Sum_probs=72.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
|.|+++|+++||||||++.|.+..+.++.. |..+....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~---s~~~~~~~--------------------------------------- 38 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVT---SIEPNVAT--------------------------------------- 38 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccC---cEeecceE---------------------------------------
Confidence 689999999999999999999886522111 11111000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCC-CeEEEEeccCccccccHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP-NSVILAISPANQDIATSDAM 197 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~-~~iil~v~~a~~~~~~~~~l 197 (441)
..+... .....+.|||+||..+. +.+...|++.. +++|++++++...-...++.
T Consensus 39 -----------~~~~~~-~~~~~~~l~D~pG~~~~-------------~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~ 93 (203)
T cd04105 39 -----------FILNSE-GKGKKFRLVDVPGHPKL-------------RDKLLETLKNSAKGIVFVVDSATFQKNLKDVA 93 (203)
T ss_pred -----------EEeecC-CCCceEEEEECCCCHHH-------------HHHHHHHHhccCCEEEEEEECccchhHHHHHH
Confidence 000000 12346899999997542 46677888887 99999887755311111111
Q ss_pred H----HHHH--hCCCCCcEEEEeccCCCCCC
Q 013508 198 K----LARE--VDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~----l~~~--~~~~~~r~i~VltK~D~~~~ 222 (441)
. ++.. ....+.|+++|.||.|+...
T Consensus 94 ~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 94 EFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 1 1111 12347899999999998754
No 184
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.09 E-value=7.7e-10 Score=102.37 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=48.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...+.||||||..+. ...+..+++.+|+++++|+. ..+. ......+++.....+.|.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f-------------~~~~~~~l~~aD~~ilVvD~-~~g~-~~~t~~~l~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF-------------SSEVTAALRLCDGALVVVDA-VEGV-CVQTETVLRQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc-------------HHHHHHHHHhcCeeEEEEEC-CCCC-CHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 457899999998653 35677888999998887754 3333 33334455555556789999999999
Q ss_pred CC
Q 013508 219 LM 220 (441)
Q Consensus 219 ~~ 220 (441)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 185
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.08 E-value=1.2e-09 Score=97.20 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=68.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.+++|||||++++.+..+.+... . |-...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~-~-t~~~~------------------------------------------- 36 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYV-P-TVFDH------------------------------------------- 36 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC-C-ceeee-------------------------------------------
Confidence 69999999999999999999887622111 1 10000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
....+.+.+ ....+.++||||.... ..+...++...+++|++++..+.. +.. ..+
T Consensus 37 --------~~~~~~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~ 94 (174)
T cd04135 37 --------YAVSVTVGG-KQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 94 (174)
T ss_pred --------eEEEEEECC-EEEEEEEEeCCCcccc-------------cccccccCCCCCEEEEEEECCCHHHHHHHHHHH
Confidence 000111211 1235789999997543 123334677788888776543321 111 122
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...++.. ..+.|.++|.||+|+.+.
T Consensus 95 ~~~l~~~-~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 95 VPELKEY-APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred HHHHHhh-CCCCCEEEEeEchhhhcC
Confidence 3334433 457899999999998654
No 186
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.08 E-value=1.8e-09 Score=96.37 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.|+||||.... ..+...|+++++++|++++..+.+ +.. ..++..++...+ ..|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvgnK 114 (174)
T cd01871 49 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 114 (174)
T ss_pred EEEEEEECCCchhh-------------hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 46889999996432 345667888999999888664432 111 123333444333 6899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 115 ~Dl~~~ 120 (174)
T cd01871 115 LDLRDD 120 (174)
T ss_pred hhhccC
Confidence 998643
No 187
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.07 E-value=5.3e-10 Score=101.19 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccccH--HHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIATS--DAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~~--~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.|+||||.... ..+...|+..++++|++.+..+. .+.+. .++..++...+ +.|+++|.||
T Consensus 48 ~~l~i~Dt~G~~~~-------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEF-------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChhc-------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 47899999997432 23455678889988887654332 22211 23444443333 6899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+....
T Consensus 114 ~Dl~~~~ 120 (189)
T cd04134 114 CDLREAR 120 (189)
T ss_pred hhhccCh
Confidence 9997543
No 188
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.07 E-value=5.4e-10 Score=106.93 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=47.9
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...+++|||||..+. ...+..++..+|++++++.+.. +. ......+.+.+...+.|.++|+||+
T Consensus 62 ~~~~i~liDtPG~~~f-------------~~~~~~~l~~aD~~i~Vvd~~~-g~-~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 62 KGHKINLIDTPGYADF-------------VGETRAALRAADAALVVVSAQS-GV-EVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred CCEEEEEEECcCHHHH-------------HHHHHHHHHHCCEEEEEEeCCC-CC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3468999999998542 2456677888998888775543 32 2222334445555688999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 127 D~~~~ 131 (268)
T cd04170 127 DRERA 131 (268)
T ss_pred ccCCC
Confidence 98754
No 189
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.07 E-value=1e-09 Score=101.36 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...+.+|||||..+. ...+..++..+|+++++++... .. .....++.+.....+.+.++|+||+|
T Consensus 70 ~~~i~iiDtpG~~~f-------------~~~~~~~~~~aD~~llVvD~~~-~~-~~~~~~~~~~~~~~~~p~iiviNK~D 134 (213)
T cd04167 70 SYLFNIIDTPGHVNF-------------MDEVAAALRLSDGVVLVVDVVE-GV-TSNTERLIRHAILEGLPIVLVINKID 134 (213)
T ss_pred EEEEEEEECCCCcch-------------HHHHHHHHHhCCEEEEEEECCC-CC-CHHHHHHHHHHHHcCCCEEEEEECcc
Confidence 357899999998653 3456778889999888886543 22 22223334444445689999999999
Q ss_pred CC
Q 013508 219 LM 220 (441)
Q Consensus 219 ~~ 220 (441)
++
T Consensus 135 ~~ 136 (213)
T cd04167 135 RL 136 (213)
T ss_pred cC
Confidence 87
No 190
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.05 E-value=1.2e-09 Score=97.77 Aligned_cols=115 Identities=25% Similarity=0.253 Sum_probs=74.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|+.++|||||+..++...| +..... |-..
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f-~~~~~~-Ti~~-------------------------------------------- 36 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKF-PTDYIP-TVFD-------------------------------------------- 36 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC-CCCCCC-ccee--------------------------------------------
Confidence 699999999999999999998765 322111 1110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~--~~~ 196 (441)
.+. ..+.+.+ ....+.|+||+|.... +.+...|+++++++|++.+..+. .+.+ ..+
T Consensus 37 ----~~~---~~~~~~~-~~v~l~i~Dt~G~~~~-------------~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w 95 (176)
T cd04133 37 ----NFS---ANVSVDG-NTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLISRASYENVLKKW 95 (176)
T ss_pred ----eeE---EEEEECC-EEEEEEEEECCCCccc-------------cccchhhcCCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 010 1112222 3357899999997543 35566789999999888765432 2222 234
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+..++...+ +.+.++|.||+|+.+.
T Consensus 96 ~~~i~~~~~-~~piilvgnK~Dl~~~ 120 (176)
T cd04133 96 VPELRHYAP-NVPIVLVGTKLDLRDD 120 (176)
T ss_pred HHHHHHhCC-CCCEEEEEeChhhccC
Confidence 444444443 6899999999999654
No 191
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.2e-10 Score=98.30 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=78.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.-+||++|++|+|||||++..+-..| -+... ||
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f-d~~Yq-----AT----------------------------------------- 54 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQ-----AT----------------------------------------- 54 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh-ccccc-----ce-----------------------------------------
Confidence 36899999999999999999987665 11110 10
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc--ccccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--DIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~--~~~~~~ 195 (441)
.+..|-...+. +.+. ...|.+|||.|.-+ .+.++-.|++++..+|++.+-.+. -..+..
T Consensus 55 ---IGiDFlskt~~--l~d~-~vrLQlWDTAGQER-------------FrslipsY~Rds~vaviVyDit~~~Sfe~t~k 115 (221)
T KOG0094|consen 55 ---IGIDFLSKTMY--LEDR-TVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVIVYDITDRNSFENTSK 115 (221)
T ss_pred ---eeeEEEEEEEE--EcCc-EEEEEEEecccHHH-------------HhhhhhhhccCCeEEEEEEeccccchHHHHHH
Confidence 11223233222 3332 45789999999743 479999999999988877654433 223344
Q ss_pred HHHHHHHhCC-CCCcEEEEeccCCCCCCcC
Q 013508 196 AMKLAREVDP-TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 196 ~l~l~~~~~~-~~~r~i~VltK~D~~~~~~ 224 (441)
|+.=++.-.. .+..+++|-||.|+.++..
T Consensus 116 Wi~dv~~e~gs~~viI~LVGnKtDL~dkrq 145 (221)
T KOG0094|consen 116 WIEDVRRERGSDDVIIFLVGNKTDLSDKRQ 145 (221)
T ss_pred HHHHHHhccCCCceEEEEEcccccccchhh
Confidence 5543333333 2467888999999998753
No 192
>CHL00071 tufA elongation factor Tu
Probab=99.04 E-value=5.8e-10 Score=113.01 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEecc
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~VltK 216 (441)
+..+++||||||.. ..+..+ ...+..+|.++++|+ +..+.. ....+.+..+...+.| .|+|+||
T Consensus 73 ~~~~~~~iDtPGh~------------~~~~~~-~~~~~~~D~~ilVvd-a~~g~~-~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 73 ENRHYAHVDCPGHA------------DYVKNM-ITGAAQMDGAILVVS-AADGPM-PQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred CCeEEEEEECCChH------------HHHHHH-HHHHHhCCEEEEEEE-CCCCCc-HHHHHHHHHHHHcCCCEEEEEEEc
Confidence 45688999999953 123344 344567888877765 444442 3333445555556777 6789999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+.+..
T Consensus 138 ~D~~~~~ 144 (409)
T CHL00071 138 EDQVDDE 144 (409)
T ss_pred cCCCCHH
Confidence 9998643
No 193
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.03 E-value=2.9e-09 Score=99.27 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..-+|+|+|+.++|||||++.+++..| +... .|+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y-----~pTi--------------------------------------- 46 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCY-PETY-----VPTV--------------------------------------- 46 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCC-CCCc-----CCce---------------------------------------
Confidence 345799999999999999999998875 3221 1211
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-- 193 (441)
+ ..+ ...+.+.+ ....+.|+||||-... +.+...|+++++++|++.+..+.. +..
T Consensus 47 ---~--~~~---~~~i~~~~-~~v~l~iwDTaG~e~~-------------~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~ 104 (232)
T cd04174 47 ---F--ENY---TAGLETEE-QRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 104 (232)
T ss_pred ---e--eee---EEEEEECC-EEEEEEEEeCCCchhh-------------HHHHHHHcCCCcEEEEEEECCChHHHHHHH
Confidence 0 000 01112221 2357899999996432 466778999999988887654432 111
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..++..++...+ +.++|+|.||+|+.+
T Consensus 105 ~~w~~~i~~~~~-~~piilVgNK~DL~~ 131 (232)
T cd04174 105 KKWKAEIMDYCP-STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHHHHHHhCC-CCCEEEEEECccccc
Confidence 234444554444 578999999999864
No 194
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.03 E-value=1.1e-09 Score=115.77 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEec
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLT 215 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~Vlt 215 (441)
++...++||||||..+ .+.+| ...+...|.++++| +++.++.. ...+.+..+...+.+ .|+|+|
T Consensus 48 ~~g~~i~~IDtPGhe~------------fi~~m-~~g~~~~D~~lLVV-da~eg~~~-qT~ehl~il~~lgi~~iIVVlN 112 (614)
T PRK10512 48 PDGRVLGFIDVPGHEK------------FLSNM-LAGVGGIDHALLVV-ACDDGVMA-QTREHLAILQLTGNPMLTVALT 112 (614)
T ss_pred CCCcEEEEEECCCHHH------------HHHHH-HHHhhcCCEEEEEE-ECCCCCcH-HHHHHHHHHHHcCCCeEEEEEE
Confidence 3445689999999732 22344 35567789888776 45544422 222223333334555 579999
Q ss_pred cCCCCCCcC--cHHHHHcCcc--ccc-CCCeEEEEeCChhhhccCCcHHHHH
Q 013508 216 KLDLMDKGT--NALDVLEGRS--YRL-QHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 216 K~D~~~~~~--~~~~~l~~~~--~~l-~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
|+|+.++.. ...+.+.... ..+ ..++++++..++.+++.+++.+...
T Consensus 113 KiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 113 KADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 999986421 0111111000 111 1345666666666665555555443
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.02 E-value=2.3e-09 Score=109.37 Aligned_cols=144 Identities=17% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
...|+++|.+++|||||+++|++..- ..++.-+ +.+..-....++.-.+++-+.+...+ ++
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g------~i~~~~~-----------~~~~~~~~~~g~~~~~~~~~~D~~~~--Er 66 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETG------AIDEHII-----------EELREEAKEKGKESFKFAWVMDRLKE--ER 66 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcC------CcCHHHH-----------HHHHHHHHhcCCcccchhhhhccCHh--Hh
Confidence 34699999999999999999997642 2221100 00000000000000011111111111 11
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc--H
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT--S 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~--~ 194 (441)
..| ++.+.....+. .+...++||||||..+.. ..+ ...+..+|.++++++.... +... .
T Consensus 67 ~rG----~T~d~~~~~~~-~~~~~i~liDtpG~~~~~------------~~~-~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 67 ERG----VTIDLAHKKFE-TDKYYFTIVDCPGHRDFV------------KNM-ITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred hcC----ccceeeeEEEe-cCCeEEEEEECCCcccch------------hhH-hhchhcCCEEEEEEEcccCCCCCcchH
Confidence 123 33333333333 345689999999964321 122 2345678988887754321 3322 2
Q ss_pred HHHHHHHHhCCCC-CcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTG-ERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~-~r~i~VltK~D~~~ 221 (441)
..+.+++. .+ .+.++|+||+|+.+
T Consensus 129 ~~~~~~~~---~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 129 EHVFLART---LGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHH---cCCCeEEEEEEcccccc
Confidence 33334433 34 36899999999975
No 196
>PTZ00258 GTP-binding protein; Provisional
Probab=99.02 E-value=1.9e-09 Score=107.07 Aligned_cols=104 Identities=17% Similarity=0.242 Sum_probs=67.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.+-.+|++||.||+|||||+|+|+|.+.-......||+.|..-...... . ..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d-~---------------------------r~ 70 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPD-E---------------------------RF 70 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEeccc-c---------------------------hh
Confidence 4667999999999999999999999887556677889888753322110 0 00
Q ss_pred hhhcCCCCCcCCcceEEEEecC---CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSP---NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~---~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
..+.. ++.| ...++.|+||||+...... .+.+.+.....++++|+++++|..
T Consensus 71 ~~l~~-------------~~~~~~~~~aqi~lvDtpGLv~ga~~------g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 71 DWLCK-------------HFKPKSIVPAQLDITDIAGLVKGASE------GEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred hHHHH-------------HcCCcccCCCCeEEEECCCcCcCCcc------hhHHHHHHHHHHHHCCEEEEEEeC
Confidence 00000 1111 1236899999999864321 122334556678889998888864
No 197
>PLN03127 Elongation factor Tu; Provisional
Probab=99.01 E-value=9.1e-10 Score=112.26 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-..|+++|..++|||||+++|+|..- ..|.. .... |.. .|. .. .
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~-~~g~~--~~~~--------------~~~---------~D~------~~--~-- 104 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKA--KAVA--------------FDE---------IDK------AP--E-- 104 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHH-Hhhcc--ccee--------------ecc---------ccC------Ch--h--
Confidence 34699999999999999999986421 11111 0000 000 000 00 0
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
.+..+++.+.....+.. +..+++||||||+.+ .+.+++.. +..+|+++++|+ +..+... ...
T Consensus 105 --E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~------------f~~~~~~g-~~~aD~allVVd-a~~g~~~-qt~ 166 (447)
T PLN03127 105 --EKARGITIATAHVEYET-AKRHYAHVDCPGHAD------------YVKNMITG-AAQMDGGILVVS-APDGPMP-QTK 166 (447)
T ss_pred --HhhcCceeeeeEEEEcC-CCeEEEEEECCCccc------------hHHHHHHH-HhhCCEEEEEEE-CCCCCch-hHH
Confidence 11133444444444433 446899999999843 22444443 345887777765 5544422 334
Q ss_pred HHHHHhCCCCCc-EEEEeccCCCCCC
Q 013508 198 KLAREVDPTGER-TFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r-~i~VltK~D~~~~ 222 (441)
+.+..+...+.+ .|+|+||+|+++.
T Consensus 167 e~l~~~~~~gip~iIvviNKiDlv~~ 192 (447)
T PLN03127 167 EHILLARQVGVPSLVVFLNKVDVVDD 192 (447)
T ss_pred HHHHHHHHcCCCeEEEEEEeeccCCH
Confidence 455555556778 4788999999863
No 198
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.00 E-value=2.2e-09 Score=94.22 Aligned_cols=148 Identities=18% Similarity=0.289 Sum_probs=85.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|+.++|||||++.+.+..+ |..... |....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~~~~~~-t~~~~------------------------------------------- 35 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-PENYIP-TIGID------------------------------------------- 35 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-TSSSET-TSSEE-------------------------------------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-cccccc-ccccc-------------------------------------------
Confidence 589999999999999999998875 322211 11000
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-c-ccHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~-~~~~~l 197 (441)
.....+.+. .....+.|+|+||.... ..+...++++.+++|++.+..+.. + .-..++
T Consensus 36 -------~~~~~~~~~-~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~ 94 (162)
T PF00071_consen 36 -------SYSKEVSID-GKPVNLEIWDTSGQERF-------------DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWL 94 (162)
T ss_dssp -------EEEEEEEET-TEEEEEEEEEETTSGGG-------------HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHH
T ss_pred -------ccccccccc-ccccccccccccccccc-------------ccccccccccccccccccccccccccccccccc
Confidence 000111111 22347899999996432 355667788999888887543321 1 112445
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhc
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 253 (441)
..+....+...+.++|.||.|+.+...--.+.........+.+|+.+......++.
T Consensus 95 ~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 95 EEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVK 150 (162)
T ss_dssp HHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHH
T ss_pred ccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHH
Confidence 55555666568999999999988633211111111112233567776655544443
No 199
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.00 E-value=2.4e-09 Score=96.37 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=73.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|+.++|||||++.+++..| +.... .|-..
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~-pT~~~------------------------------------------- 40 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFE------------------------------------------- 40 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccC-Cceee-------------------------------------------
Confidence 4799999999999999999998875 32211 11100
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~ 195 (441)
.+ ...+.+. .....+.|+||+|-... ..+...|+++++++|++.+..+.. +.+ ..
T Consensus 41 -----~~---~~~~~~~-~~~~~l~iwDtaG~e~~-------------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~ 98 (182)
T cd04172 41 -----NY---TASFEID-TQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKK 98 (182)
T ss_pred -----ee---EEEEEEC-CEEEEEEEEECCCchhh-------------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 00 0111121 22357899999996432 356677899999988887654431 111 23
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
+...++...+ ..+.|+|.||+|+.+
T Consensus 99 w~~~i~~~~~-~~piilVgNK~DL~~ 123 (182)
T cd04172 99 WKGEIQEFCP-NTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHCC-CCCEEEEeEChhhhc
Confidence 4444555544 589999999999864
No 200
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.00 E-value=1.9e-09 Score=113.75 Aligned_cols=132 Identities=18% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
...|+++|+.++|||||+++|+... +..++... +..+.|.... ++
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~------g~i~~~~~---------------------~~~~~D~~~~--------Er 47 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYT------GAISEREM---------------------REQVLDSMDL--------ER 47 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHc------CCCccccc---------------------cccccCCChH--------HH
Confidence 4579999999999999999998753 22222110 0000000000 11
Q ss_pred hcCCCCCcCCcceEEEEe--cCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 118 VTGKTKQISPIPIHLSIY--SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~--~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
..| ..+....+.+... +.....++||||||..+. ...+..|+..+|++|++++. ..+...+.
T Consensus 48 erG--iTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF-------------~~~v~~~l~~aD~aILVvDa-t~g~~~qt 111 (595)
T TIGR01393 48 ERG--ITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF-------------SYEVSRSLAACEGALLLVDA-AQGIEAQT 111 (595)
T ss_pred hcC--CCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEecC-CCCCCHhH
Confidence 112 2233334444333 222357899999999653 35567788999988887754 43332222
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
. .........+.+.|+|+||+|+..
T Consensus 112 ~-~~~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 112 L-ANVYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred H-HHHHHHHHcCCCEEEEEECcCCCc
Confidence 1 111122234678999999999864
No 201
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.00 E-value=1.4e-09 Score=103.33 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=31.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCcccccccccccEE
Q 013508 41 VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (441)
|++||.||+|||||+|+|+|.+.-+.....||+.|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5799999999999999999998755566788888865
No 202
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.99 E-value=1.8e-09 Score=98.48 Aligned_cols=109 Identities=11% Similarity=0.113 Sum_probs=65.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
...+.|+||||.... ..+...|++.++++|++++..+.. +. ...++..++... .+.|.++|.||
T Consensus 43 ~~~l~iwDt~G~e~~-------------~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK 108 (200)
T smart00176 43 PIRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNK 108 (200)
T ss_pred EEEEEEEECCCchhh-------------hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 357899999997442 467778999999988887554421 11 112333344433 36899999999
Q ss_pred CCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
+|+....... +.+. ........|+.+.+.+..++...+.++....
T Consensus 109 ~Dl~~~~v~~-~~~~-~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 109 VDVKDRKVKA-KSIT-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred cccccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9986432111 1111 0112234577777777766666666555443
No 203
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.99 E-value=3.1e-09 Score=95.28 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=72.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+++|+.++|||||++++.+..| |... .|+..
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~~----------------------------------------- 35 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCY-PETY-----VPTVF----------------------------------------- 35 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CCCc-----CCceE-----------------------------------------
Confidence 699999999999999999998875 4322 12110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
..+ ...+.+.+ ....+.|+||||.... ..+...|++.++++|++.+..+.. +.. ..+
T Consensus 36 ---~~~---~~~~~~~~-~~~~l~iwDt~G~~~~-------------~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w 95 (178)
T cd04131 36 ---ENY---TASFEIDE-QRIELSLWDTSGSPYY-------------DNVRPLCYPDSDAVLICFDISRPETLDSVLKKW 95 (178)
T ss_pred ---EEE---EEEEEECC-EEEEEEEEECCCchhh-------------hhcchhhcCCCCEEEEEEECCChhhHHHHHHHH
Confidence 000 00112222 2357899999996432 345566888999888887654322 111 234
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
...++...+ ..+.|+|.||+|+.+
T Consensus 96 ~~~i~~~~~-~~~iilVgnK~DL~~ 119 (178)
T cd04131 96 RGEIQEFCP-NTKVLLVGCKTDLRT 119 (178)
T ss_pred HHHHHHHCC-CCCEEEEEEChhhhc
Confidence 444555544 579999999999864
No 204
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.99 E-value=5.6e-09 Score=94.69 Aligned_cols=116 Identities=21% Similarity=0.187 Sum_probs=72.2
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+++|+.++|||||+..++...| |... .|+.
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f-~~~~-----~~t~----------------------------------------- 36 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAF-PKEY-----IPTV----------------------------------------- 36 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcCC-----CCce-----------------------------------------
Confidence 3799999999999999999998765 3221 1211
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~ 195 (441)
+ ..+ ...+.+. .....+.|+||||-... +.+...|+++++++|++++..+.+ +.+ ..
T Consensus 37 -~--~~~---~~~~~~~-~~~~~l~i~Dt~G~e~~-------------~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~ 96 (191)
T cd01875 37 -F--DNY---SAQTAVD-GRTVSLNLWDTAGQEEY-------------DRLRTLSYPQTNVFIICFSIASPSSYENVRHK 96 (191)
T ss_pred -E--eee---EEEEEEC-CEEEEEEEEECCCchhh-------------hhhhhhhccCCCEEEEEEECCCHHHHHHHHHH
Confidence 0 000 0011121 23357899999997442 466778899999988887654432 111 11
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+...++... .+.|+++|.||.|+.+.
T Consensus 97 w~~~i~~~~-~~~piilvgNK~DL~~~ 122 (191)
T cd01875 97 WHPEVCHHC-PNVPILLVGTKKDLRND 122 (191)
T ss_pred HHHHHHhhC-CCCCEEEEEeChhhhcC
Confidence 222233322 36899999999998654
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.97 E-value=2.9e-09 Score=111.99 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
+.++|+||||.... ..+...++..+|.+|++++. ..++. ......+..+...+.|+++|+||+|+
T Consensus 71 ~~i~~iDTPG~e~f-------------~~~~~~~~~~aD~~IlVvDa-~~g~~-~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 71 PGLLFIDTPGHEAF-------------TNLRKRGGALADIAILVVDI-NEGFQ-PQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred CCEEEEECCChHHH-------------HHHHHHhHhhCCEEEEEEEC-CCCCC-HhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 35899999998542 34555677789988887754 33332 22223333444467899999999998
Q ss_pred C
Q 013508 220 M 220 (441)
Q Consensus 220 ~ 220 (441)
.
T Consensus 136 ~ 136 (586)
T PRK04004 136 I 136 (586)
T ss_pred c
Confidence 6
No 206
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.97 E-value=3.6e-09 Score=100.52 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=78.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
-|.+||-|||||||||++++..+-=-.++..+|-.|. .
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~Pn------------------------------------------L 198 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPN------------------------------------------L 198 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCc------------------------------------------c
Confidence 4789999999999999999987521224455666663 1
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l 197 (441)
| .++ + .....+++-|.||++..+..+- -+- .--.+.|+++..++.+++.+..+. ..++..
T Consensus 199 G--------vV~--~--~~~~sfv~ADIPGLIEGAs~G~--GLG----~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~ 260 (369)
T COG0536 199 G--------VVR--V--DGGESFVVADIPGLIEGASEGV--GLG----LRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQ 260 (369)
T ss_pred c--------EEE--e--cCCCcEEEecCcccccccccCC--Ccc----HHHHHHHHhhheeEEEEecCcccCCCHHHHHH
Confidence 2 111 2 3445799999999998765432 111 123455667787777776554432 122222
Q ss_pred HHHH---HhCC--CCCcEEEEeccCCCCCCcCcH
Q 013508 198 KLAR---EVDP--TGERTFGVLTKLDLMDKGTNA 226 (441)
Q Consensus 198 ~l~~---~~~~--~~~r~i~VltK~D~~~~~~~~ 226 (441)
.+.. .+.+ ..++.++|+||+|+....++.
T Consensus 261 ~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~ 294 (369)
T COG0536 261 TIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL 294 (369)
T ss_pred HHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH
Confidence 2222 3332 378999999999977655443
No 207
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.95 E-value=3.9e-09 Score=94.34 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=75.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.--+|+++|.++|||||+++.|....+ .+-.||.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~-------~~~~pT~--------------------------------------- 46 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEI-------SETIPTI--------------------------------------- 46 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSE-------EEEEEES---------------------------------------
T ss_pred cEEEEEEECCCccchHHHHHHhhhccc-------cccCccc---------------------------------------
Confidence 455899999999999999999987654 1122220
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
++.-. . +.. ....++++|++|-... +.++..|+.+.+++|++|++++.+- -.++
T Consensus 47 -------g~~~~--~--i~~-~~~~~~~~d~gG~~~~-------------~~~w~~y~~~~~~iIfVvDssd~~~-l~e~ 100 (175)
T PF00025_consen 47 -------GFNIE--E--IKY-KGYSLTIWDLGGQESF-------------RPLWKSYFQNADGIIFVVDSSDPER-LQEA 100 (175)
T ss_dssp -------SEEEE--E--EEE-TTEEEEEEEESSSGGG-------------GGGGGGGHTTESEEEEEEETTGGGG-HHHH
T ss_pred -------ccccc--e--eee-CcEEEEEEeccccccc-------------cccceeeccccceeEEEEeccccee-eccc
Confidence 11111 1 111 3457899999997542 4678889999999999987765432 2333
Q ss_pred HHHHHH-hC---CCCCcEEEEeccCCCCCC
Q 013508 197 MKLARE-VD---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~-~~---~~~~r~i~VltK~D~~~~ 222 (441)
.+.+.. +. -.+.|+++++||.|+.+.
T Consensus 101 ~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 101 KEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ccchhhhcchhhcccceEEEEeccccccCc
Confidence 332332 22 246899999999998754
No 208
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.95 E-value=3.4e-09 Score=111.87 Aligned_cols=133 Identities=19% Similarity=0.281 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|+++|+.++|||||+++|+... +..++... +..+.|.... +
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~t------g~i~~~~~---------------------~~~~lD~~~~--------E 50 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELT------GTLSEREM---------------------KAQVLDSMDL--------E 50 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhc------CCCccccc---------------------ccccccCchH--------H
Confidence 45689999999999999999998642 22221100 0000010000 1
Q ss_pred hhcCCCCCcCCcceEEEEec--CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYS--PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~--~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
+..| ..+....+.+.... .....++||||||..+. ...+..++..+|++|++|+.. .+...+
T Consensus 51 rerG--iTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF-------------~~~v~~sl~~aD~aILVVDas-~gv~~q 114 (600)
T PRK05433 51 RERG--ITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAS-QGVEAQ 114 (600)
T ss_pred hhcC--CcccccEEEEEEEccCCCcEEEEEEECCCcHHH-------------HHHHHHHHHHCCEEEEEEECC-CCCCHH
Confidence 1112 22333344444432 22357899999999653 345677888899888877553 333222
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
. ......+...+.+.|+|+||+|+..
T Consensus 115 t-~~~~~~~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 115 T-LANVYLALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred H-HHHHHHHHHCCCCEEEEEECCCCCc
Confidence 2 2222222334788999999999864
No 209
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=4.8e-09 Score=102.95 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=63.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|++||.||+|||||+|+|+|.+........||+.|..-...-.. ...++ +
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d-~r~~~---------------------------l 54 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPD-PRLDK---------------------------L 54 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEecc-ccchh---------------------------h
Confidence 5799999999999999999999885444557888888642221110 00000 0
Q ss_pred cCCCCCcCCcceEEEEecCC---CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 119 TGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~---~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
. +++.|. ...+.|+|+||+..... ..+.+-+.....++++|+++++|..
T Consensus 55 ~-------------~~~~p~~~~~a~i~lvD~pGL~~~a~------~g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 55 A-------------EIVKPKKIVPATIEFVDIAGLVKGAS------KGEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred H-------------HhcCCccccCceEEEEECCCCCCCCC------hHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 0 011111 13689999999986432 1222334555667889998888764
No 210
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.94 E-value=2.7e-08 Score=97.01 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
....|.|+|.||||||||+++|...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 211
>PRK12739 elongation factor G; Reviewed
Probab=98.93 E-value=4.1e-09 Score=113.64 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+...|+|+|.+++|||||+|+|+...--....+.+.. +..+.|+... +
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~------------------------~~~~~D~~~~--------E 54 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD------------------------GAATMDWMEQ--------E 54 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC------------------------CccccCCChh--------H
Confidence 5678999999999999999999753210000000000 0011111110 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
...+++-+.....+.. +..+++||||||+.+. ...+..++...|++|++|+ +..+... ..
T Consensus 55 ----~~rgiti~~~~~~~~~-~~~~i~liDTPG~~~f-------------~~e~~~al~~~D~~ilVvD-a~~g~~~-qt 114 (691)
T PRK12739 55 ----QERGITITSAATTCFW-KGHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFD-AVSGVEP-QS 114 (691)
T ss_pred ----hhcCCCccceeEEEEE-CCEEEEEEcCCCHHHH-------------HHHHHHHHHHhCeEEEEEe-CCCCCCH-HH
Confidence 1122333332223333 4568999999998542 2347778888898887775 4445433 33
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+++.+...+.|.|+++||+|+...
T Consensus 115 ~~i~~~~~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 115 ETVWRQADKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34666666678999999999999853
No 212
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.93 E-value=7.1e-09 Score=96.06 Aligned_cols=115 Identities=16% Similarity=0.217 Sum_probs=71.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|||++++|||||++.+++..| |..... |-..
T Consensus 3 KIvvvGd~~vGKTsLi~~~~~~~f-~~~y~p-Ti~~-------------------------------------------- 36 (222)
T cd04173 3 KIVVVGDAECGKTALLQVFAKDAY-PGSYVP-TVFE-------------------------------------------- 36 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCC-cccc--------------------------------------------
Confidence 699999999999999999998875 432211 1100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDA 196 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~ 196 (441)
.+ ...+.+. .....|.||||+|.... ..+...|+...|++|++++..+.+ +.. ..+
T Consensus 37 ----~~---~~~~~~~-~~~v~L~iwDt~G~e~~-------------~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w 95 (222)
T cd04173 37 ----NY---TASFEID-KRRIELNMWDTSGSSYY-------------DNVRPLAYPDSDAVLICFDISRPETLDSVLKKW 95 (222)
T ss_pred ----ce---EEEEEEC-CEEEEEEEEeCCCcHHH-------------HHHhHHhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 00 0111222 22357899999997432 355667889999988888654432 111 112
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...++... .+.|+|+|.||+|+.+.
T Consensus 96 ~~~~~~~~-~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 96 QGETQEFC-PNAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHHHHhhC-CCCCEEEEEECcccccc
Confidence 22233333 35899999999998753
No 213
>PRK12735 elongation factor Tu; Reviewed
Probab=98.93 E-value=3.1e-09 Score=107.29 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEE-EEec
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLT 215 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i-~Vlt 215 (441)
.+..+++|+||||..+ .+..+. ..+..+|.+++++++ ..+...+ ..+.+..+...+.+.+ +|+|
T Consensus 72 ~~~~~i~~iDtPGh~~------------f~~~~~-~~~~~aD~~llVvda-~~g~~~q-t~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 72 TANRHYAHVDCPGHAD------------YVKNMI-TGAAQMDGAILVVSA-ADGPMPQ-TREHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CCCcEEEEEECCCHHH------------HHHHHH-hhhccCCEEEEEEEC-CCCCchh-HHHHHHHHHHcCCCeEEEEEE
Confidence 3456899999999732 223333 445678887777654 4433222 2234444555577766 5799
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+.+.
T Consensus 137 K~Dl~~~ 143 (396)
T PRK12735 137 KCDMVDD 143 (396)
T ss_pred ecCCcch
Confidence 9999853
No 214
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.93 E-value=5.6e-09 Score=112.67 Aligned_cols=134 Identities=11% Similarity=0.171 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+...|+|+|.+++|||||+|+|++..- ...+ ... ... +....|+.. .+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g------~~~~-~~~-----~~~------------g~~~~D~~~--------~e 56 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTG------RIHK-IGE-----VHD------------GAATMDWME--------QE 56 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCC------Cccc-ccc-----ccC------------CccccCCCH--------HH
Confidence 567899999999999999999986421 1111 000 000 000111110 01
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+..| ++-+.....+.. +...++||||||..+. ...+..+++..|++|++++. ..+... ..
T Consensus 57 ~~rg----iti~~~~~~~~~-~~~~i~liDTPG~~~~-------------~~~~~~~l~~~D~~ilVvda-~~g~~~-~~ 116 (689)
T TIGR00484 57 KERG----ITITSAATTVFW-KGHRINIIDTPGHVDF-------------TVEVERSLRVLDGAVAVLDA-VGGVQP-QS 116 (689)
T ss_pred HhcC----CCEecceEEEEE-CCeEEEEEECCCCcch-------------hHHHHHHHHHhCEEEEEEeC-CCCCCh-hH
Confidence 1112 222222222333 3468999999999653 13466778888988887754 444322 23
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+++.+...+.|.++|+||+|+...
T Consensus 117 ~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 117 ETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 34555566668899999999999853
No 215
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=5e-09 Score=93.22 Aligned_cols=153 Identities=15% Similarity=0.176 Sum_probs=96.4
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
+..+-.|++||+.++|||+++-.+....|- +.....+
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~-------~~~~sTi------------------------------------ 45 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFN-------TSFISTI------------------------------------ 45 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCc-------CCccceE------------------------------------
Confidence 356789999999999999999999887661 1111110
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccc-
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA- 192 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~- 192 (441)
++....-.+++.+ ....|.+|||.|-... +.++.+|++.+..++|+++-.+. .+.
T Consensus 46 ---------GIDFk~kti~l~g-~~i~lQiWDtaGQerf-------------~ti~~sYyrgA~gi~LvyDitne~Sfen 102 (207)
T KOG0078|consen 46 ---------GIDFKIKTIELDG-KKIKLQIWDTAGQERF-------------RTITTAYYRGAMGILLVYDITNEKSFEN 102 (207)
T ss_pred ---------EEEEEEEEEEeCC-eEEEEEEEEcccchhH-------------HHHHHHHHhhcCeeEEEEEccchHHHHH
Confidence 1111111112222 3457899999997543 78999999999999998866543 121
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADIN 253 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~ 253 (441)
...|++.+++..+.+.+.++|-||+|+..+.....+.-+......+..|+.+.+.+...+.
T Consensus 103 i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078|consen 103 IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIE 163 (207)
T ss_pred HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHH
Confidence 1335666666667789999999999998754322222111122334456676665554443
No 216
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.92 E-value=2.3e-09 Score=108.15 Aligned_cols=132 Identities=15% Similarity=0.234 Sum_probs=71.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
--.|+++|..++|||||+++|++.- ...|.+-.. .+. +.+.. ..++
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~-~~~g~~~~~----------------~~~---------------~~d~~--~~E~ 57 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVL-AKEGGAAAR----------------AYD---------------QIDNA--PEEK 57 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhH-HHhhccccc----------------ccc---------------cccCC--HHHH
Confidence 3469999999999999999998652 111110000 000 00000 0011
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
. .+++.+...+.+.. ...+++||||||..+ .+.++. ..+..+|.++++++ +..+. .....
T Consensus 58 ~----rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~------------f~~~~~-~~~~~~D~~ilVvd-a~~g~-~~qt~ 117 (394)
T TIGR00485 58 A----RGITINTAHVEYET-ENRHYAHVDCPGHAD------------YVKNMI-TGAAQMDGAILVVS-ATDGP-MPQTR 117 (394)
T ss_pred h----cCcceeeEEEEEcC-CCEEEEEEECCchHH------------HHHHHH-HHHhhCCEEEEEEE-CCCCC-cHHHH
Confidence 1 22333333444333 345799999999732 123332 33456788777765 44433 22333
Q ss_pred HHHHHhCCCCCcEE-EEeccCCCCCCc
Q 013508 198 KLAREVDPTGERTF-GVLTKLDLMDKG 223 (441)
Q Consensus 198 ~l~~~~~~~~~r~i-~VltK~D~~~~~ 223 (441)
+.+..+...+.+.+ +|+||+|+.++.
T Consensus 118 e~l~~~~~~gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 118 EHILLARQVGVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred HHHHHHHHcCCCEEEEEEEecccCCHH
Confidence 44444445567765 689999998643
No 217
>PRK00007 elongation factor G; Reviewed
Probab=98.91 E-value=5.1e-09 Score=112.89 Aligned_cols=135 Identities=13% Similarity=0.170 Sum_probs=78.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+...|+|+|.+++|||||+|+|+...--.+.-+.+.. +..+.|+... +
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~------------------------~~~~~D~~~~------E-- 56 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD------------------------GAATMDWMEQ------E-- 56 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccC------------------------CcccCCCCHH------H--
Confidence 5678999999999999999999742100000000000 0011111110 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+ ..+++.+...+.+.. ....++||||||..+. ..-+...+...|++|++|+ +..++.. ..
T Consensus 57 ~----~rg~ti~~~~~~~~~-~~~~~~liDTPG~~~f-------------~~ev~~al~~~D~~vlVvd-a~~g~~~-qt 116 (693)
T PRK00007 57 Q----ERGITITSAATTCFW-KDHRINIIDTPGHVDF-------------TIEVERSLRVLDGAVAVFD-AVGGVEP-QS 116 (693)
T ss_pred H----hCCCCEeccEEEEEE-CCeEEEEEeCCCcHHH-------------HHHHHHHHHHcCEEEEEEE-CCCCcch-hh
Confidence 1 122333333333333 3468999999997542 1225666777888777775 5555533 33
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+++.+...+.+.|+++||+|+....
T Consensus 117 ~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 117 ETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 456666777789999999999998543
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.91 E-value=3e-09 Score=98.61 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=46.5
Q ss_pred cCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc------cc--ccHHH
Q 013508 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ------DI--ATSDA 196 (441)
Q Consensus 125 ~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~------~~--~~~~~ 196 (441)
.+.+.....+.. ....++||||||..+. ...+..++..+|++|++|+.... +. .....
T Consensus 63 ~T~d~~~~~~~~-~~~~i~liDtpG~~~~-------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~ 128 (219)
T cd01883 63 VTIDVGLAKFET-EKYRFTILDAPGHRDF-------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREH 128 (219)
T ss_pred cCeecceEEEee-CCeEEEEEECCChHHH-------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHH
Confidence 344433333333 4568999999997431 12233556778988888765442 11 11222
Q ss_pred HHHHHHhCCCC-CcEEEEeccCCCCC
Q 013508 197 MKLAREVDPTG-ERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~~~-~r~i~VltK~D~~~ 221 (441)
+.++. ..+ .|+|+|+||+|+..
T Consensus 129 ~~~~~---~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 129 ALLAR---TLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHH---HcCCCeEEEEEEcccccc
Confidence 22332 233 67899999999984
No 219
>PRK00049 elongation factor Tu; Reviewed
Probab=98.91 E-value=2.7e-09 Score=107.67 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEE-EEecc
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTK 216 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i-~VltK 216 (441)
+..+++|+||||..+ .+.++. ..+..+|.++++|+ +..+. .....+++..+...+.|.+ +++||
T Consensus 73 ~~~~i~~iDtPG~~~------------f~~~~~-~~~~~aD~~llVVD-a~~g~-~~qt~~~~~~~~~~g~p~iiVvvNK 137 (396)
T PRK00049 73 EKRHYAHVDCPGHAD------------YVKNMI-TGAAQMDGAILVVS-AADGP-MPQTREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred CCeEEEEEECCCHHH------------HHHHHH-hhhccCCEEEEEEE-CCCCC-chHHHHHHHHHHHcCCCEEEEEEee
Confidence 456899999999732 223333 44677898888765 44443 2233334444455577876 58999
Q ss_pred CCCCC
Q 013508 217 LDLMD 221 (441)
Q Consensus 217 ~D~~~ 221 (441)
+|+++
T Consensus 138 ~D~~~ 142 (396)
T PRK00049 138 CDMVD 142 (396)
T ss_pred cCCcc
Confidence 99985
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=98.91 E-value=3.7e-09 Score=106.58 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=43.2
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEecc
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~VltK 216 (441)
+..+++||||||..+ .+.+++. -+..+|+++++|+ +..+.. ....+.+..+...+.+ .|+|+||
T Consensus 73 ~~~~i~~iDtPGh~~------------f~~~~~~-~~~~~d~~llVvd-~~~g~~-~~t~~~~~~~~~~g~~~~IvviNK 137 (394)
T PRK12736 73 EKRHYAHVDCPGHAD------------YVKNMIT-GAAQMDGAILVVA-ATDGPM-PQTREHILLARQVGVPYLVVFLNK 137 (394)
T ss_pred CCcEEEEEECCCHHH------------HHHHHHH-HHhhCCEEEEEEE-CCCCCc-hhHHHHHHHHHHcCCCEEEEEEEe
Confidence 456889999999531 2234433 3456888777765 444432 2233344444455777 5788999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 138 ~D~~~~ 143 (394)
T PRK12736 138 VDLVDD 143 (394)
T ss_pred cCCcch
Confidence 999753
No 221
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.90 E-value=1e-08 Score=94.81 Aligned_cols=118 Identities=24% Similarity=0.344 Sum_probs=79.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccc--cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
-+|+|+|+.|||||||++++.+..+ +.+... .+..|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~-~~~~~~t~~~~~~~~~-------------------------------------- 46 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF-PEGYPPTIGNLDPAKT-------------------------------------- 46 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC-cccCCCceeeeeEEEE--------------------------------------
Confidence 5899999999999999999999876 332221 11222110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc---cccc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIAT 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~---~~~~ 193 (441)
.........+.++||+|.... +.+...|...+++++++++.... +...
T Consensus 47 ----------------~~~~~~~~~~~~~Dt~gq~~~-------------~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~ 97 (219)
T COG1100 47 ----------------IEPYRRNIKLQLWDTAGQEEY-------------RSLRPEYYRGANGILIVYDSTLRESSDELT 97 (219)
T ss_pred ----------------EEeCCCEEEEEeecCCCHHHH-------------HHHHHHHhcCCCEEEEEEecccchhhhHHH
Confidence 011111346899999998542 57888999999999988866541 2223
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
..+...++...+...+.+.|.||+|+.....
T Consensus 98 ~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 98 EEWLEELRELAPDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred HHHHHHHHHhCCCCceEEEEecccccccchh
Confidence 3444455555555789999999999987654
No 222
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.90 E-value=3.8e-09 Score=99.57 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=64.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.---++++||.||+|||||||+|+|.+--+-+...+|..|.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~V--------------------------------------- 101 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPV--------------------------------------- 101 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccc---------------------------------------
Confidence 44578999999999999999999998764555555555442
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
+| +...+..++.++|+||++.....+... -..+.+.++++|.||++++.
T Consensus 102 ---PG-------------~l~Y~ga~IQild~Pgii~gas~g~gr------G~~vlsv~R~ADlIiiVld~ 150 (365)
T COG1163 102 ---PG-------------MLEYKGAQIQLLDLPGIIEGASSGRGR------GRQVLSVARNADLIIIVLDV 150 (365)
T ss_pred ---cc-------------eEeecCceEEEEcCcccccCcccCCCC------cceeeeeeccCCEEEEEEec
Confidence 34 555567799999999999866433211 13355667889988877654
No 223
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8.5e-09 Score=90.52 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=83.9
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
+..+.+|+|+|+.|+|||-|+-.+.+-.| |-..
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~---------------------------------------------- 38 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY---------------------------------------------- 38 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCc-chhh----------------------------------------------
Confidence 35688999999999999999999998876 2111
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccc-
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA- 192 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~- 192 (441)
..+-++.-....+++.+.. ..|.+|||.|-- +.+.++.+|.++++.||++.+-... .+.
T Consensus 39 -----~sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQE-------------RFrtit~syYR~ahGii~vyDiT~~~SF~~ 99 (205)
T KOG0084|consen 39 -----ISTIGVDFKIRTVELDGKT-IKLQIWDTAGQE-------------RFRTITSSYYRGAHGIIFVYDITKQESFNN 99 (205)
T ss_pred -----cceeeeEEEEEEeeecceE-EEEEeeeccccH-------------HHhhhhHhhccCCCeEEEEEEcccHHHhhh
Confidence 1111222223333454543 479999999963 3478999999999999998754332 111
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
-.+|++-.+..-..+.+.++|-||+|+.+...
T Consensus 100 v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 100 VKRWIQEIDRYASENVPKLLVGNKCDLTEKRV 131 (205)
T ss_pred HHHHHHHhhhhccCCCCeEEEeeccccHhhee
Confidence 13344444444455679999999999987653
No 224
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.87 E-value=6e-09 Score=109.70 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=48.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...++||||||..+. ...+..+++.+|+++|+|++.. +...+ ...+++.+...+.|.|+|+||+
T Consensus 62 ~~~kinlIDTPGh~DF-------------~~ev~~~l~~aD~alLVVDa~~-G~~~q-T~~~l~~a~~~~ip~IVviNKi 126 (594)
T TIGR01394 62 NGTKINIVDTPGHADF-------------GGEVERVLGMVDGVLLLVDASE-GPMPQ-TRFVLKKALELGLKPIVVINKI 126 (594)
T ss_pred CCEEEEEEECCCHHHH-------------HHHHHHHHHhCCEEEEEEeCCC-CCcHH-HHHHHHHHHHCCCCEEEEEECC
Confidence 3468999999998542 2456788889999888886543 33222 2233444444678999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 127 D~~~a 131 (594)
T TIGR01394 127 DRPSA 131 (594)
T ss_pred CCCCc
Confidence 98643
No 225
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.87 E-value=1.8e-08 Score=91.96 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHh--------------
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREV-------------- 203 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~-------------- 203 (441)
..+.|+||+|-... +.+...|+++++++|++.+-.+..- . -..++..+...
T Consensus 54 ~~l~IwDtaG~e~~-------------~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 54 FFVELWDVGGSESV-------------KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred EEEEEEecCCchhH-------------HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 36889999997432 5677789999999999876544321 0 12333333322
Q ss_pred -----CCCCCcEEEEeccCCCCCC
Q 013508 204 -----DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 204 -----~~~~~r~i~VltK~D~~~~ 222 (441)
.+.+.|+|+|.||+|+.+.
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cccccCCCCceEEEEEECccchhh
Confidence 1235799999999999764
No 226
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.86 E-value=1.8e-08 Score=101.93 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEec
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~Vlt 215 (441)
+...++||||||..+ .+.++. ..+..+|.++++|+ +..++. +.+.+.+++.+. ..+.|+|+|
T Consensus 78 ~~~~~~liDtPGh~~------------f~~~~~-~~~~~aD~allVVd-a~~G~~~qt~~~~~~~~~~~--~~~iivviN 141 (406)
T TIGR02034 78 DKRKFIVADTPGHEQ------------YTRNMA-TGASTADLAVLLVD-ARKGVLEQTRRHSYIASLLG--IRHVVLAVN 141 (406)
T ss_pred CCeEEEEEeCCCHHH------------HHHHHH-HHHhhCCEEEEEEE-CCCCCccccHHHHHHHHHcC--CCcEEEEEE
Confidence 456899999999632 223443 34667888877775 444442 233344555443 246888999
Q ss_pred cCCCCCCc
Q 013508 216 KLDLMDKG 223 (441)
Q Consensus 216 K~D~~~~~ 223 (441)
|+|+.+..
T Consensus 142 K~D~~~~~ 149 (406)
T TIGR02034 142 KMDLVDYD 149 (406)
T ss_pred ecccccch
Confidence 99998543
No 227
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.86 E-value=5.3e-09 Score=86.90 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+|+|+|+.+||||||+++|++..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999999875
No 228
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.86 E-value=1.2e-08 Score=92.09 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+.++||||..... .+...++.+.+.++++....+.+ +.. ..++..++...+ ..|.|+|.||
T Consensus 49 ~~l~i~Dt~g~~~~~-------------~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK 114 (187)
T cd04129 49 VQLALWDTAGQEEYE-------------RLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLK 114 (187)
T ss_pred EEEEEEECCCChhcc-------------ccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeC
Confidence 467899999975421 12223567788877765443322 111 123444443333 4899999999
Q ss_pred CCCCC
Q 013508 217 LDLMD 221 (441)
Q Consensus 217 ~D~~~ 221 (441)
+|+.+
T Consensus 115 ~Dl~~ 119 (187)
T cd04129 115 KDLRQ 119 (187)
T ss_pred hhhhh
Confidence 99864
No 229
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.86 E-value=7.2e-09 Score=104.97 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc--cccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~--~~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
...++|+||||..+. + ..+..++..+|.++++|++.... ..+.+.+.++.... ..+.++|+||
T Consensus 79 ~~~i~liDtPGh~~f------------~-~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK 143 (406)
T TIGR03680 79 LRRVSFVDAPGHETL------------M-ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNK 143 (406)
T ss_pred ccEEEEEECCCHHHH------------H-HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEc
Confidence 357899999996321 1 23345556788888877654321 12233343343221 2468999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (406)
T TIGR03680 144 IDLVSK 149 (406)
T ss_pred cccCCH
Confidence 999864
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.85 E-value=4.2e-08 Score=101.02 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCcc--ccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRR--FTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~i~~ 113 (441)
.....|+|+|..++|||||+++|+... +..++.-+ ..+..-....+.. -.++.-+.+...+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~------g~i~~~~~-----------~~~~~~~~~~g~~~~~~~~a~~~D~~~e 87 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDT------KQIYEDQL-----------ASLHNDSKRHGTQGEKLDLALLVDGLQA 87 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhc------CCCcHHHH-----------HHHHHHHHhcCCCccccchhhhccCChH
Confidence 456899999999999999999999764 22221100 0000000000000 0001111111111
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA- 192 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~- 192 (441)
+.. .++|-+.-. ..+..+..+++||||||..+ ...+++.. +..+|.++++|+ +..+..
T Consensus 88 Er~------rgiTid~~~-~~~~~~~~~i~~iDTPGh~~------------f~~~~~~~-l~~aD~allVVD-a~~G~~~ 146 (474)
T PRK05124 88 ERE------QGITIDVAY-RYFSTEKRKFIIADTPGHEQ------------YTRNMATG-ASTCDLAILLID-ARKGVLD 146 (474)
T ss_pred Hhh------cCCCeEeeE-EEeccCCcEEEEEECCCcHH------------HHHHHHHH-HhhCCEEEEEEE-CCCCccc
Confidence 111 233333222 22334556899999999522 22345444 577888777765 444432
Q ss_pred -cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 193 -TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 -~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+.+.+.++..+. -.+.|+|+||+|+.+..
T Consensus 147 qt~~~~~l~~~lg--~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 147 QTRRHSFIATLLG--IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred cchHHHHHHHHhC--CCceEEEEEeeccccch
Confidence 223344555443 24688999999998543
No 231
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.85 E-value=6.7e-09 Score=92.19 Aligned_cols=118 Identities=20% Similarity=0.387 Sum_probs=65.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+.|.|+++|+.+||||+|+..|+.....+ ++|.......+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~------------------------------------ 41 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAY------------------------------------ 41 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC------------------------------------
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceE------------------------------------
Confidence 45789999999999999999999765422 22221110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHH--hhcCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS--YVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~--yi~~~~~iil~v~~a~~~~~~~ 194 (441)
.+..+....+.+||+||..+.- ..+... |+....+||++|+++...-.-.
T Consensus 42 ----------------~~~~~~~~~~~lvD~PGH~rlr------------~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~ 93 (181)
T PF09439_consen 42 ----------------NVNNSKGKKLRLVDIPGHPRLR------------SKLLDELKYLSNAKGIIFVVDSSTDQKELR 93 (181)
T ss_dssp ----------------CGSSTCGTCECEEEETT-HCCC------------HHHHHHHHHHGGEEEEEEEEETTTHHHHHH
T ss_pred ----------------EeecCCCCEEEEEECCCcHHHH------------HHHHHhhhchhhCCEEEEEEeCccchhhHH
Confidence 0112345689999999997642 233333 6788899999998764211111
Q ss_pred HHHH----H--HHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMK----L--AREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~----l--~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++.+ + .....+.+.|++++.||.|+...
T Consensus 94 ~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 94 DVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred HHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1111 1 12234678999999999998753
No 232
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.85 E-value=1.2e-08 Score=94.87 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=43.0
Q ss_pred ecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEE
Q 013508 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGV 213 (441)
Q Consensus 135 ~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~V 213 (441)
..+....++++||||.. ..+ ...+..+|.++++++ +..++..++ ..++..+...+.+ +|+|
T Consensus 78 ~~~~~~~i~~vDtPg~~---------------~~~-l~~ak~aDvVllviD-a~~~~~~~~-~~i~~~l~~~g~p~vi~V 139 (225)
T cd01882 78 VTGKKRRLTFIECPNDI---------------NAM-IDIAKVADLVLLLID-ASFGFEMET-FEFLNILQVHGFPRVMGV 139 (225)
T ss_pred EecCCceEEEEeCCchH---------------HHH-HHHHHhcCEEEEEEe-cCcCCCHHH-HHHHHHHHHcCCCeEEEE
Confidence 33456789999999842 122 233466787766664 444443322 3345555445666 4569
Q ss_pred eccCCCCCCc
Q 013508 214 LTKLDLMDKG 223 (441)
Q Consensus 214 ltK~D~~~~~ 223 (441)
+||+|++.+.
T Consensus 140 vnK~D~~~~~ 149 (225)
T cd01882 140 LTHLDLFKKN 149 (225)
T ss_pred EeccccCCcH
Confidence 9999998544
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.85 E-value=9.1e-09 Score=110.03 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=43.3
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEe
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
.+..+++||||||..+ .+..++. .+..+|.++++|+ +..++. +.+.+.++..+. ..+.|+|+
T Consensus 101 ~~~~~~~liDtPG~~~------------f~~~~~~-~~~~aD~~llVvd-a~~g~~~~t~e~~~~~~~~~--~~~iivvv 164 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------------YTRNMVT-GASTADLAIILVD-ARKGVLTQTRRHSFIASLLG--IRHVVLAV 164 (632)
T ss_pred cCCceEEEEECCChHH------------HHHHHHH-HHHhCCEEEEEEE-CCCCccccCHHHHHHHHHhC--CCeEEEEE
Confidence 4556899999999632 1233443 4677888777665 444432 233444555442 25688899
Q ss_pred ccCCCCC
Q 013508 215 TKLDLMD 221 (441)
Q Consensus 215 tK~D~~~ 221 (441)
||+|+.+
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999985
No 234
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.84 E-value=2e-08 Score=104.34 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=48.7
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...+++|||||..+. ...+..++...|++|+++++.+ +... ...++.+.....+.|.++++||+
T Consensus 77 ~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~-gv~~-~t~~l~~~~~~~~iPiiv~iNK~ 141 (526)
T PRK00741 77 RDCLINLLDTPGHEDF-------------SEDTYRTLTAVDSALMVIDAAK-GVEP-QTRKLMEVCRLRDTPIFTFINKL 141 (526)
T ss_pred CCEEEEEEECCCchhh-------------HHHHHHHHHHCCEEEEEEecCC-CCCH-HHHHHHHHHHhcCCCEEEEEECC
Confidence 3467999999998543 2446677888999888876543 3322 23344555555689999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 142 D~~~a 146 (526)
T PRK00741 142 DRDGR 146 (526)
T ss_pred ccccc
Confidence 98653
No 235
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.84 E-value=1.9e-08 Score=91.53 Aligned_cols=67 Identities=25% Similarity=0.144 Sum_probs=43.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH--HHHHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~--~~l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.|+||+|... .+...|+++++++|++.+..+.. +.+- .++..++...+ +.|+|+|.|
T Consensus 65 ~v~l~iwDTaG~~~---------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilvgN 128 (195)
T cd01873 65 SVSLRLWDTFGDHD---------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILVGC 128 (195)
T ss_pred EEEEEEEeCCCChh---------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 35789999999742 12234788999988887654332 2111 23344444333 679999999
Q ss_pred cCCCCC
Q 013508 216 KLDLMD 221 (441)
Q Consensus 216 K~D~~~ 221 (441)
|+|+.+
T Consensus 129 K~DL~~ 134 (195)
T cd01873 129 KLDLRY 134 (195)
T ss_pred chhccc
Confidence 999864
No 236
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.83 E-value=1.9e-08 Score=104.60 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...+.|+||||..+. ...+..++..+|++|++|++.. ++.. ....+.+.....+.|+++++||+
T Consensus 78 ~~~~inliDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~-gv~~-~t~~l~~~~~~~~~PiivviNKi 142 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDF-------------SEDTYRTLTAVDNCLMVIDAAK-GVET-RTRKLMEVTRLRDTPIFTFMNKL 142 (527)
T ss_pred CCeEEEEEECCChhhH-------------HHHHHHHHHhCCEEEEEEECCC-CCCH-HHHHHHHHHHhcCCCEEEEEECc
Confidence 4568999999998432 2445677888999988876544 3322 22233344444578999999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 143 D~~~ 146 (527)
T TIGR00503 143 DRDI 146 (527)
T ss_pred cccC
Confidence 9864
No 237
>PRK10218 GTP-binding protein; Provisional
Probab=98.83 E-value=2.6e-08 Score=104.79 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=48.0
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...+.||||||..+. ...+..+++.+|++|+++++.. +...+ ....++.+...+.|.|+|+||+
T Consensus 66 ~~~~inliDTPG~~df-------------~~~v~~~l~~aDg~ILVVDa~~-G~~~q-t~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 66 NDYRINIVDTPGHADF-------------GGEVERVMSMVDSVLLVVDAFD-GPMPQ-TRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred CCEEEEEEECCCcchh-------------HHHHHHHHHhCCEEEEEEeccc-CccHH-HHHHHHHHHHcCCCEEEEEECc
Confidence 4568999999998653 3456778899999988876543 33222 2223344444678999999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 131 D~~~ 134 (607)
T PRK10218 131 DRPG 134 (607)
T ss_pred CCCC
Confidence 9864
No 238
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.82 E-value=5.9e-08 Score=95.21 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=83.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
--.|+|+|+-++|||||+|++++.-++|.=+..--|.- .++++ ...
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R-------------------------------a~DEL---pqs 62 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER-------------------------------AQDEL---PQS 62 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH-------------------------------HHhcc---CcC
Confidence 34799999999999999999999966553221100000 00000 000
Q ss_pred hcCC------CCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHH----------------HHHHHHHHHhhc
Q 013508 118 VTGK------TKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV----------------EDIESMVRSYVE 175 (441)
Q Consensus 118 ~~g~------~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~----------------~~i~~~v~~yi~ 175 (441)
..|+ .+-+....+.+.....-..++.||||+|+.....-|.-+... +..+-=+++.|.
T Consensus 63 ~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~ 142 (492)
T TIGR02836 63 AAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQ 142 (492)
T ss_pred CCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHH
Confidence 0120 122233444444443334689999999998754322211110 111112566777
Q ss_pred -CCCeEEEEeccCc------cccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 176 -KPNSVILAISPAN------QDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 176 -~~~~iil~v~~a~------~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+++..|+++++++ .++ .....++..++...++|.++|+||.|-..+
T Consensus 143 dhstIgivVtTDgsi~dI~Re~y-~~aEe~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 143 EHSTIGVVVTTDGTITDIPREDY-VEAEERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred hcCcEEEEEEcCCCccccccccc-hHHHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 6665555554553 122 223445777788889999999999995433
No 239
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=5.6e-09 Score=91.30 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=90.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
-+|+++|+.|+|||||+..++..+|-+. ..||
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~------~e~T------------------------------------------ 37 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFHEN------IEPT------------------------------------------ 37 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccccc------cccc------------------------------------------
Confidence 4799999999999999999998877221 0110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK 198 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~ 198 (441)
.+..|-...+. +. .....+.||||.|.-+. +.+..-|++++++.|++.+-.+.+- -..+-.
T Consensus 38 --IGaaF~tktv~--~~-~~~ikfeIWDTAGQERy-------------~slapMYyRgA~AAivvYDit~~~S-F~~aK~ 98 (200)
T KOG0092|consen 38 --IGAAFLTKTVT--VD-DNTIKFEIWDTAGQERY-------------HSLAPMYYRGANAAIVVYDITDEES-FEKAKN 98 (200)
T ss_pred --cccEEEEEEEE--eC-CcEEEEEEEEcCCcccc-------------cccccceecCCcEEEEEEecccHHH-HHHHHH
Confidence 01112211111 21 22456789999998653 5788889999998888764433211 122222
Q ss_pred HHHHhC---CCCCcEEEEeccCCCCCCcCc-HHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 199 LAREVD---PTGERTFGVLTKLDLMDKGTN-ALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 199 l~~~~~---~~~~r~i~VltK~D~~~~~~~-~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
+.+++. +...-+.+|-||+|+.+.... +.+... -.-..++-|+..+...+.+++..+..+....
T Consensus 99 WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~-yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 99 WVKELQRQASPNIVIALVGNKADLLERREVEFEEAQA-YAESQGLLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred HHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHH-HHHhcCCEEEEEecccccCHHHHHHHHHHhc
Confidence 333443 323344568999999985432 222211 1112345577777777666655444444433
No 240
>PLN03126 Elongation factor Tu; Provisional
Probab=98.80 E-value=1.6e-08 Score=103.78 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|+++|..++|||||+++|++..- .+..+.+.. +. +.|.. . .+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~-----~i~~~~~~~------------~~---------~~D~~------~--~E 125 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALA-----SMGGSAPKK------------YD---------EIDAA------P--EE 125 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhh-----hhccccccc------------cc---------cccCC------h--hH
Confidence 345689999999999999999997532 121111100 00 00000 0 01
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+. .+++-+.....+. .+...++||||||..+ .+.++ ...+..+|+++++|+ +..+... ..
T Consensus 126 r~----rGiTi~~~~~~~~-~~~~~i~liDtPGh~~------------f~~~~-~~g~~~aD~ailVVd-a~~G~~~-qt 185 (478)
T PLN03126 126 RA----RGITINTATVEYE-TENRHYAHVDCPGHAD------------YVKNM-ITGAAQMDGAILVVS-GADGPMP-QT 185 (478)
T ss_pred Hh----CCeeEEEEEEEEe-cCCcEEEEEECCCHHH------------HHHHH-HHHHhhCCEEEEEEE-CCCCCcH-HH
Confidence 11 2233232222222 3456899999999743 22344 334457888877764 4444422 22
Q ss_pred HHHHHHhCCCCCc-EEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGER-TFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r-~i~VltK~D~~~~ 222 (441)
.+.+..+...+.+ .|+++||+|+.+.
T Consensus 186 ~e~~~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 186 KEHILLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHHHHHcCCCeEEEEEecccccCH
Confidence 3344444555776 7789999999864
No 241
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.79 E-value=2.2e-08 Score=102.25 Aligned_cols=69 Identities=17% Similarity=0.341 Sum_probs=42.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc--cc--cHHHHHHHHHhCCCCCcEEEE
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA--TSDAMKLAREVDPTGERTFGV 213 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~--~~--~~~~l~l~~~~~~~~~r~i~V 213 (441)
+...++||||||..+ .+.. ...++..+|++|++++..+.. .. ....+.+++.+. ..+.|+|
T Consensus 83 ~~~~i~iiDtpGh~~------------f~~~-~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD------------FIKN-MITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--INQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH------------HHHH-HHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--CCeEEEE
Confidence 346899999999522 1122 334567899888887654431 11 122233444332 2478899
Q ss_pred eccCCCCC
Q 013508 214 LTKLDLMD 221 (441)
Q Consensus 214 ltK~D~~~ 221 (441)
+||+|+.+
T Consensus 148 iNK~Dl~~ 155 (426)
T TIGR00483 148 INKMDSVN 155 (426)
T ss_pred EEChhccC
Confidence 99999975
No 242
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.79 E-value=8.8e-08 Score=81.53 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=98.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
--+|.++|.-||||||+++.+.|.+. +..-.|.+-
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~---~~i~pt~gf------------------------------------------ 50 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT---DTISPTLGF------------------------------------------ 50 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc---cccCCccce------------------------------------------
Confidence 45899999999999999999999863 111111111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
--.. +. .....++++|.-|-... ++.++.|....+++|++|+++. ...-++..
T Consensus 51 --------~Ikt----l~-~~~~~L~iwDvGGq~~l-------------r~~W~nYfestdglIwvvDssD-~~r~~e~~ 103 (185)
T KOG0073|consen 51 --------QIKT----LE-YKGYTLNIWDVGGQKTL-------------RSYWKNYFESTDGLIWVVDSSD-RMRMQECK 103 (185)
T ss_pred --------eeEE----EE-ecceEEEEEEcCCcchh-------------HHHHHHhhhccCeEEEEEECch-HHHHHHHH
Confidence 1111 11 12458999999997542 7899999999999999997743 33334444
Q ss_pred HHHHHh----CCCCCcEEEEeccCCCCCCc--CcHHHHHcCcccccCCCe--EEEEeCChhhhccCCcHHHHHHHHH
Q 013508 198 KLAREV----DPTGERTFGVLTKLDLMDKG--TNALDVLEGRSYRLQHPW--VGIVNRSQADINRNIDMIVARRKER 266 (441)
Q Consensus 198 ~l~~~~----~~~~~r~i~VltK~D~~~~~--~~~~~~l~~~~~~l~~g~--~~v~~~s~~~~~~~~~~~~~~~~e~ 266 (441)
+.++.+ .-.|.+.+++.||-|+...- .++...+.-+.+.....| +.+...++.++..+++++.....+.
T Consensus 104 ~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 104 QELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 333332 23478999999999987321 112222221222222334 4555667777777888877766553
No 243
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.78 E-value=2.1e-08 Score=96.11 Aligned_cols=139 Identities=22% Similarity=0.353 Sum_probs=74.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
.|.|||..|+|||||+|+|++..+.+.......... ..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~------------------------------------------~~ 43 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSA------------------------------------------SI 43 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S-----------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccccccccccc------------------------------------------cc
Confidence 589999999999999999999887554411110000 00
Q ss_pred CCCCCcCCcceEEEEecC-CCCCcEEEeCCCCCcCccC-CCCccHHHHHHHHHHHhhcC-------------CCeEEEEe
Q 013508 120 GKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEK-------------PNSVILAI 184 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~-~~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~-------------~~~iil~v 184 (441)
..+..+..... .+... -..+|++|||||+.+.... .....+...+++.-..|+.+ .+++++++
T Consensus 44 ~~~~~i~~~~~--~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI 121 (281)
T PF00735_consen 44 SRTLEIEERTV--ELEENGVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFI 121 (281)
T ss_dssp -SCEEEEEEEE--EEEETCEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE
T ss_pred ccccceeeEEE--EeccCCcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEE
Confidence 00001111111 12111 1247999999999764211 00122333344444444431 24677777
Q ss_pred ccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 185 SPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 185 ~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
.|...++. ...++.++++.. ..++|-|+.|+|.+.+.+
T Consensus 122 ~pt~~~L~-~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~e 159 (281)
T PF00735_consen 122 PPTGHGLK-PLDIEFMKRLSK-RVNVIPVIAKADTLTPEE 159 (281)
T ss_dssp -TTSSSS--HHHHHHHHHHTT-TSEEEEEESTGGGS-HHH
T ss_pred cCCCccch-HHHHHHHHHhcc-cccEEeEEecccccCHHH
Confidence 77666663 445567888876 478999999999997553
No 244
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.78 E-value=3.5e-08 Score=91.21 Aligned_cols=128 Identities=23% Similarity=0.289 Sum_probs=79.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|++++.|..|+|||||||.++..+.. .-|..+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~-----~~t~k~---------------------------------------- 168 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNI-----ADTSKS---------------------------------------- 168 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhh-----hhhcCC----------------------------------------
Confidence 45689999999999999999999987641 111100
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCC---eEEEEeccCccccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN---SVILAISPANQDIA 192 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~---~iil~v~~a~~~~~ 192 (441)
.+|.+.. ++.+. -...+.+||+||+.....+ ....+...+++..|+.+-+ ++.|+| ++...+.
T Consensus 169 --K~g~Tq~-------in~f~-v~~~~~~vDlPG~~~a~y~---~~~~~d~~~~t~~Y~leR~nLv~~FLLv-d~sv~i~ 234 (320)
T KOG2486|consen 169 --KNGKTQA-------INHFH-VGKSWYEVDLPGYGRAGYG---FELPADWDKFTKSYLLERENLVRVFLLV-DASVPIQ 234 (320)
T ss_pred --CCcccee-------eeeee-ccceEEEEecCCcccccCC---ccCcchHhHhHHHHHHhhhhhheeeeee-eccCCCC
Confidence 0111110 11111 2347899999997655443 2223334688999977533 233333 4555554
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.-|.. .+..+...+.|..+|+||||.....
T Consensus 235 ~~D~~-~i~~~ge~~VP~t~vfTK~DK~k~~ 264 (320)
T KOG2486|consen 235 PTDNP-EIAWLGENNVPMTSVFTKCDKQKKV 264 (320)
T ss_pred CCChH-HHHHHhhcCCCeEEeeehhhhhhhc
Confidence 44443 4556677899999999999998543
No 245
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.77 E-value=4.1e-08 Score=106.31 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=48.3
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
....+++||||||..+. ...+..++..+|++|++++. ..++. .....+++.+...+.+.++|+||
T Consensus 83 ~~~~~i~liDTPG~~~f-------------~~~~~~al~~aD~~llVvda-~~g~~-~~t~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVCA-VEGVM-PQTETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CCceEEEEEeCCCcccc-------------HHHHHHHHHhcCEEEEEEec-CCCCC-ccHHHHHHHHHHcCCCEEEEEEC
Confidence 34568999999999753 24467788899988888754 44432 22333444444556788999999
Q ss_pred CCCCC
Q 013508 217 LDLMD 221 (441)
Q Consensus 217 ~D~~~ 221 (441)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99864
No 246
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.76 E-value=3.7e-08 Score=86.48 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=39.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHHHHHHhC-CCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVD-PTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~l~~~~~-~~~~r~i~VltK 216 (441)
..+.++||+|... ..|.+.+++++++.+..+.. +.+ ..++..+.... ....|+++|.||
T Consensus 47 ~~l~i~D~~g~~~------------------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK 108 (158)
T cd04103 47 HLLLIRDEGGAPD------------------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQ 108 (158)
T ss_pred EEEEEEECCCCCc------------------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeH
Confidence 4688999999832 13556788888887554432 111 22333333332 245799999999
Q ss_pred CCCC
Q 013508 217 LDLM 220 (441)
Q Consensus 217 ~D~~ 220 (441)
.|+.
T Consensus 109 ~Dl~ 112 (158)
T cd04103 109 DAIS 112 (158)
T ss_pred HHhh
Confidence 9985
No 247
>PLN00023 GTP-binding protein; Provisional
Probab=98.76 E-value=4.4e-08 Score=94.44 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=45.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCC------------
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDP------------ 205 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~------------ 205 (441)
..+.|+||+|-... +.+...|+++++++|+|++..+...- ...+++.+.....
T Consensus 83 v~LqIWDTAGqErf-------------rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSGHERY-------------KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCCChhh-------------hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 35889999997442 56788899999999998765443211 1223333333211
Q ss_pred CCCcEEEEeccCCCCCC
Q 013508 206 TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~~ 222 (441)
...++|+|.||+|+...
T Consensus 150 ~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 150 LPVPYIVIGNKADIAPK 166 (334)
T ss_pred CCCcEEEEEECcccccc
Confidence 13689999999999754
No 248
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.73 E-value=1.6e-07 Score=86.72 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH---HHHHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS---DAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~---~~l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.++||||.... ..+...|+...+++|++++..+. ..-. .++..+.... ...++++|.|
T Consensus 57 ~i~i~~~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~i~~~~-~~~~i~lv~n 121 (215)
T PTZ00132 57 PICFNVWDTAGQEKF-------------GGLRDGYYIKGQCAIIMFDVTSR-ITYKNVPNWHRDIVRVC-ENIPIVLVGN 121 (215)
T ss_pred EEEEEEEECCCchhh-------------hhhhHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 357889999996432 34556778888888777654322 1111 1222222222 3578889999
Q ss_pred cCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCC
Q 013508 216 KLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNI 256 (441)
Q Consensus 216 K~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~ 256 (441)
|+|+.+..... +... ........|+.+...+..+++..+
T Consensus 122 K~Dl~~~~~~~-~~~~-~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 122 KVDVKDRQVKA-RQIT-FHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred CccCccccCCH-HHHH-HHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99986432111 1111 011122346666666655544433
No 249
>PRK13351 elongation factor G; Reviewed
Probab=98.71 E-value=4e-08 Score=106.24 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=49.5
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....++||||||..+. ...+..+++..|++|++++.. .+. ......+.+.+...+.|.++|+||+
T Consensus 71 ~~~~i~liDtPG~~df-------------~~~~~~~l~~aD~~ilVvd~~-~~~-~~~~~~~~~~~~~~~~p~iiviNK~ 135 (687)
T PRK13351 71 DNHRINLIDTPGHIDF-------------TGEVERSLRVLDGAVVVFDAV-TGV-QPQTETVWRQADRYGIPRLIFINKM 135 (687)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHhCCEEEEEEeCC-CCC-CHHHHHHHHHHHhcCCCEEEEEECC
Confidence 3568999999998542 356778888999888877543 333 2223344455556688999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 136 D~~~~ 140 (687)
T PRK13351 136 DRVGA 140 (687)
T ss_pred CCCCC
Confidence 98753
No 250
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=2.1e-07 Score=81.12 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccccccc------ccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTR------RPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKE 110 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr------~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 110 (441)
.-++|+|+|.+++||+|++.+++-... ++-....+. +|+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~-v~t~~~~~~~s~k~kr~tT--------------------------------- 54 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL-VITEADASSVSGKGKRPTT--------------------------------- 54 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc-ceeecccccccccccccee---------------------------------
Confidence 567899999999999999999998752 221111111 1111
Q ss_pred HHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc
Q 013508 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (441)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~ 190 (441)
+.-+.-.+++. +...+.|+||||..+. +-|+.-+.+.+..+|++|+.+. +
T Consensus 55 --------------va~D~g~~~~~--~~~~v~LfgtPGq~RF-------------~fm~~~l~~ga~gaivlVDss~-~ 104 (187)
T COG2229 55 --------------VAMDFGSIELD--EDTGVHLFGTPGQERF-------------KFMWEILSRGAVGAIVLVDSSR-P 104 (187)
T ss_pred --------------EeecccceEEc--CcceEEEecCCCcHHH-------------HHHHHHHhCCcceEEEEEecCC-C
Confidence 11111121222 3457899999998653 5677778888888888886533 2
Q ss_pred cccHHHHHHHHHhCCCC-CcEEEEeccCCCCCCc--CcHHHHHc
Q 013508 191 IATSDAMKLAREVDPTG-ERTFGVLTKLDLMDKG--TNALDVLE 231 (441)
Q Consensus 191 ~~~~~~l~l~~~~~~~~-~r~i~VltK~D~~~~~--~~~~~~l~ 231 (441)
. ...+..+...+.... .|.++.+||.|+.+.. +...+++.
T Consensus 105 ~-~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~ 147 (187)
T COG2229 105 I-TFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALK 147 (187)
T ss_pred c-chHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHH
Confidence 2 224555555555444 8999999999998643 23444443
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=7.7e-08 Score=80.22 Aligned_cols=125 Identities=16% Similarity=0.214 Sum_probs=84.5
Q ss_pred ccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHH
Q 013508 33 SLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQ 112 (441)
Q Consensus 33 ~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (441)
+....-.+|.|+|+.++||+|++-+..|..|-|. .++..-+-
T Consensus 16 qnFDymfKlliiGnssvGKTSfl~ry~ddSFt~a---fvsTvGid----------------------------------- 57 (193)
T KOG0093|consen 16 QNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSA---FVSTVGID----------------------------------- 57 (193)
T ss_pred ccccceeeEEEEccCCccchhhhHHhhccccccc---eeeeeeee-----------------------------------
Confidence 3334445899999999999999999999988331 11111100
Q ss_pred HHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-
Q 013508 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI- 191 (441)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~- 191 (441)
|.-+.+ ..+.....+.++||.|.-. .+.++..|++.+..+||+.+..|..-
T Consensus 58 ------------FKvKTv---yr~~kRiklQiwDTagqEr-------------yrtiTTayyRgamgfiLmyDitNeeSf 109 (193)
T KOG0093|consen 58 ------------FKVKTV---YRSDKRIKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESF 109 (193)
T ss_pred ------------EEEeEe---eecccEEEEEEEecccchh-------------hhHHHHHHhhccceEEEEEecCCHHHH
Confidence 111100 1222346889999999744 26888999999999999987766432
Q ss_pred -ccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 192 -ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 192 -~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+-+++.-.++.+.....++|+|.||||+-+..
T Consensus 110 ~svqdw~tqIktysw~naqvilvgnKCDmd~eR 142 (193)
T KOG0093|consen 110 NSVQDWITQIKTYSWDNAQVILVGNKCDMDSER 142 (193)
T ss_pred HHHHHHHHHheeeeccCceEEEEecccCCccce
Confidence 22444445566666789999999999987654
No 252
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.70 E-value=6.8e-08 Score=97.88 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-.|+++|+.++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 46999999999999999999875
No 253
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.68 E-value=1e-07 Score=79.51 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=79.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-..+.++|-|+|||||++|.+..-.++ ...+.|+-.
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~--edmiptvGf----------------------------------------- 55 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYL--EDMIPTVGF----------------------------------------- 55 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccch--hhhcccccc-----------------------------------------
Confidence 4457999999999999999988754431 111222211
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---cc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---AT 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---~~ 193 (441)
. +.-.+.+...+.++|+||-... +.|...|-+..++|+++|++|..+- +.
T Consensus 56 ---------n-----mrk~tkgnvtiklwD~gGq~rf-------------rsmWerycR~v~aivY~VDaad~~k~~~sr 108 (186)
T KOG0075|consen 56 ---------N-----MRKVTKGNVTIKLWDLGGQPRF-------------RSMWERYCRGVSAIVYVVDAADPDKLEASR 108 (186)
T ss_pred ---------e-----eEEeccCceEEEEEecCCCccH-------------HHHHHHHhhcCcEEEEEeecCCcccchhhH
Confidence 1 1122334567889999998653 7899999999999999998876532 22
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++...++..-.-.|.|+++.-||.|+-+.-
T Consensus 109 ~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 109 SELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred HHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 333334443334589999999999987543
No 254
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2e-07 Score=93.36 Aligned_cols=149 Identities=16% Similarity=0.256 Sum_probs=91.6
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
+....|.|-|+|.--.||||||.+|-+..+-....|-.|...
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhI-------------------------------------- 190 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHI-------------------------------------- 190 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCcccee--------------------------------------
Confidence 556789999999999999999999988877444433333222
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
| -..+.-|++..+||.||||.-.. ..|-.+=..-.| |+++|+++.++. .
T Consensus 191 ------G----------AF~V~~p~G~~iTFLDTPGHaAF-------------~aMRaRGA~vtD-IvVLVVAadDGV-m 239 (683)
T KOG1145|consen 191 ------G----------AFTVTLPSGKSITFLDTPGHAAF-------------SAMRARGANVTD-IVVLVVAADDGV-M 239 (683)
T ss_pred ------c----------eEEEecCCCCEEEEecCCcHHHH-------------HHHHhccCcccc-EEEEEEEccCCc-c
Confidence 1 11245566789999999997432 233222223355 555555666655 3
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHH----HHHcCcccccCC-CeEEEEeCChhhhc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNAL----DVLEGRSYRLQH-PWVGIVNRSQADIN 253 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~----~~l~~~~~~l~~-g~~~v~~~s~~~~~ 253 (441)
...++-++.....+.|+|+.+||+|.- +.+.. +++......-.+ |=..+++.|+....
T Consensus 240 pQT~EaIkhAk~A~VpiVvAinKiDkp--~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 240 PQTLEAIKHAKSANVPIVVAINKIDKP--GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred HhHHHHHHHHHhcCCCEEEEEeccCCC--CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 334444555556689999999999965 33332 333332222223 44567777775433
No 255
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.67 E-value=3.8e-08 Score=80.01 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (441)
+|++||..++||+||.++|-|.+.+++..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKT 31 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKT 31 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhccc
Confidence 68999999999999999999998865443
No 256
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.66 E-value=1.4e-07 Score=102.54 Aligned_cols=133 Identities=13% Similarity=0.245 Sum_probs=75.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+...|+|+|+.++|||||+++|+... +..++.- .+ ...+.|+.... ..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~------g~i~~~~--------~g------------~~~~~D~~~~E------~~ 66 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGA------GMISEEL--------AG------------EQLALDFDEEE------QA 66 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHc------CCcchhh--------cC------------cceecCccHHH------HH
Confidence 56689999999999999999998543 2222210 00 01111221111 11
Q ss_pred hhcCCCCCcCCcceEEEEe-cCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIY-SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~-~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
.|. .+....+.+... ......++||||||..+. ...+...+...|++|++|++ ..+... .
T Consensus 67 --rgi--Ti~~~~~~~~~~~~~~~~~i~liDtPG~~df-------------~~~~~~~l~~~D~avlVvda-~~g~~~-~ 127 (731)
T PRK07560 67 --RGI--TIKAANVSMVHEYEGKEYLINLIDTPGHVDF-------------GGDVTRAMRAVDGAIVVVDA-VEGVMP-Q 127 (731)
T ss_pred --hhh--hhhccceEEEEEecCCcEEEEEEcCCCccCh-------------HHHHHHHHHhcCEEEEEEEC-CCCCCc-c
Confidence 111 111122222221 223457899999999653 24566777888988887754 444422 2
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
...+++.+...+.+.|+++||+|+.
T Consensus 128 t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 128 TETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred HHHHHHHHHHcCCCeEEEEECchhh
Confidence 2334444444467889999999986
No 257
>PTZ00416 elongation factor 2; Provisional
Probab=98.64 E-value=5.3e-08 Score=106.88 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=47.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
..++|+||||..+. ..-+...+...|++|++|+ +..++..+. ..+++.+...+.|.|+++||+|+
T Consensus 92 ~~i~liDtPG~~~f-------------~~~~~~al~~~D~ailVvd-a~~g~~~~t-~~~~~~~~~~~~p~iv~iNK~D~ 156 (836)
T PTZ00416 92 FLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVD-CVEGVCVQT-ETVLRQALQERIRPVLFINKVDR 156 (836)
T ss_pred eEEEEEcCCCHHhH-------------HHHHHHHHhcCCeEEEEEE-CCCCcCccH-HHHHHHHHHcCCCEEEEEEChhh
Confidence 45899999998652 1234666778998888765 555554443 34667777778899999999998
Q ss_pred C
Q 013508 220 M 220 (441)
Q Consensus 220 ~ 220 (441)
.
T Consensus 157 ~ 157 (836)
T PTZ00416 157 A 157 (836)
T ss_pred h
Confidence 7
No 258
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.64 E-value=1.4e-07 Score=103.74 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. -.-+...++..|+.|++|+ +..+...+ ...+.+.+...+.+.|+++||+|
T Consensus 97 ~~~inliDtPGh~dF-------------~~e~~~al~~~D~ailVvd-a~~Gv~~~-t~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDF-------------SSEVTAALRITDGALVVVD-CIEGVCVQ-TETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHH-------------HHHHHHHHhhcCEEEEEEE-CCCCCccc-HHHHHHHHHHCCCCEEEEEECCc
Confidence 346799999998543 1224556677898888775 44555333 23456666677899999999999
Q ss_pred CC
Q 013508 219 LM 220 (441)
Q Consensus 219 ~~ 220 (441)
+.
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.64 E-value=8.3e-08 Score=98.10 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=41.3
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---------ccHHHHHHHHHhCCCC
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDPTG 207 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---------~~~~~l~l~~~~~~~~ 207 (441)
.+...++||||||..+ .+.+++ ..+..+|.+|++|++ ..+. .+.+.+.++ ...|
T Consensus 82 ~~~~~i~lIDtPGh~~------------f~~~~~-~g~~~aD~ailVVda-~~G~~e~~~~~~~qT~eh~~~~---~~~g 144 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRD------------FIKNMI-TGTSQADVAILVVAS-TAGEFEAGISKDGQTREHALLA---FTLG 144 (446)
T ss_pred cCCeEEEEEECCChHH------------HHHHHH-HhhhhcCEEEEEEEc-CCCceecccCCCccHHHHHHHH---HHcC
Confidence 4556899999999633 223443 335678988887754 3332 233444444 4446
Q ss_pred Cc-EEEEeccCCC
Q 013508 208 ER-TFGVLTKLDL 219 (441)
Q Consensus 208 ~r-~i~VltK~D~ 219 (441)
.| .|+++||+|.
T Consensus 145 i~~iiv~vNKmD~ 157 (446)
T PTZ00141 145 VKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEEcccc
Confidence 55 6789999994
No 260
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.64 E-value=1.9e-06 Score=83.72 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-+.|+|+|.+|||||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999864
No 261
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.60 E-value=5.8e-08 Score=85.10 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
..|+++|.+|+|||||+|+|.|....++
T Consensus 103 ~~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 103 ISVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred eEEEEEeCCCCChHHHHHHHhcCCceee
Confidence 4688999999999999999999876433
No 262
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.59 E-value=2.4e-07 Score=94.53 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..++|||+||.. ..+++|+. -+...|.++|+|.+...... +.+.+.++..+. -.+.|+|+||+
T Consensus 117 ~~i~~IDtPGH~------------~fi~~m~~-g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKi 181 (460)
T PTZ00327 117 RHVSFVDCPGHD------------ILMATMLN-GAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKI 181 (460)
T ss_pred ceEeeeeCCCHH------------HHHHHHHH-HHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecc
Confidence 368999999952 22344443 34568888777654332122 233444444332 24688999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+.+.
T Consensus 182 Dlv~~ 186 (460)
T PTZ00327 182 DLVKE 186 (460)
T ss_pred cccCH
Confidence 99854
No 263
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.59 E-value=6.5e-08 Score=85.98 Aligned_cols=30 Identities=33% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
..+|+|+|.||+|||||+|+|+|....+++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~ 146 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVG 146 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceec
Confidence 358999999999999999999998764443
No 264
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.9e-07 Score=91.15 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=77.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|-|+|+|+--.||||||.+|-+.++-+...|-.|...-.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA-------------------------------------- 44 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGA-------------------------------------- 44 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeee--------------------------------------
Confidence 367999999999999999999999888755555544432210
Q ss_pred hhhcCCCCCcCCcceEEEEecC--CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
.++..+ ..+.++|+||||.-..+ .|=.+=.+-+|++||+| +++.++-.
T Consensus 45 ----------------~~v~~~~~~~~~itFiDTPGHeAFt-------------~mRaRGa~vtDIaILVV-a~dDGv~p 94 (509)
T COG0532 45 ----------------YQVPLDVIKIPGITFIDTPGHEAFT-------------AMRARGASVTDIAILVV-AADDGVMP 94 (509)
T ss_pred ----------------EEEEeccCCCceEEEEcCCcHHHHH-------------HHHhcCCccccEEEEEE-EccCCcch
Confidence 112222 45789999999975431 22222223367666665 55655533
Q ss_pred --HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 --~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
-++.+.+ ...+.|+|+++||+|+.+..
T Consensus 95 QTiEAI~ha---k~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 95 QTIEAINHA---KAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred hHHHHHHHH---HHCCCCEEEEEecccCCCCC
Confidence 3344444 45589999999999998543
No 265
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=1.5e-07 Score=78.56 Aligned_cols=123 Identities=17% Similarity=0.283 Sum_probs=86.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.-|.+||+||+.++||+-|+..++.- +||-|.+.+--.-
T Consensus 5 kflfkivlvgnagvgktclvrrftqg-lfppgqgatigvd---------------------------------------- 43 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQG-LFPPGQGATIGVD---------------------------------------- 43 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhcc-CCCCCCCceeeee----------------------------------------
Confidence 35778999999999999999999976 4677665422111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc-ccc-cc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN-QDI-AT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~-~~~-~~ 193 (441)
|-- -.+++.+ +...|.||||.|.-+ .+.++.+|.+.++++||+-+-+. ..+ +.
T Consensus 44 ---------fmi--ktvev~g-ekiklqiwdtagqer-------------frsitqsyyrsahalilvydiscqpsfdcl 98 (213)
T KOG0095|consen 44 ---------FMI--KTVEVNG-EKIKLQIWDTAGQER-------------FRSITQSYYRSAHALILVYDISCQPSFDCL 98 (213)
T ss_pred ---------EEE--EEEEECC-eEEEEEEeeccchHH-------------HHHHHHHHhhhcceEEEEEecccCcchhhh
Confidence 111 1223333 345789999999743 47899999999999999864322 222 24
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
.+++.-+.++.....-.|+|-||+|+.+..+
T Consensus 99 pewlreie~yan~kvlkilvgnk~d~~drre 129 (213)
T KOG0095|consen 99 PEWLREIEQYANNKVLKILVGNKIDLADRRE 129 (213)
T ss_pred HHHHHHHHHHhhcceEEEeeccccchhhhhh
Confidence 5677777777766777899999999987653
No 266
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.56 E-value=1.3e-07 Score=89.08 Aligned_cols=128 Identities=18% Similarity=0.259 Sum_probs=88.5
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
..+.|.|+|||-.|||||||+++|++..++|.+.-..|--||.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~------------------------------------- 217 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL------------------------------------- 217 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh-------------------------------------
Confidence 3578999999999999999999999999999988887776642
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
. ...-|...-..+.||-|+.+. .|..+.+..+ .+.+-+.++|.|+-+++.++.++..+
T Consensus 218 -h----------------~a~Lpsg~~vlltDTvGFisd----LP~~LvaAF~-ATLeeVaeadlllHvvDiShP~ae~q 275 (410)
T KOG0410|consen 218 -H----------------SAHLPSGNFVLLTDTVGFISD----LPIQLVAAFQ-ATLEEVAEADLLLHVVDISHPNAEEQ 275 (410)
T ss_pred -h----------------hccCCCCcEEEEeechhhhhh----CcHHHHHHHH-HHHHHHhhcceEEEEeecCCccHHHH
Confidence 0 022345567889999999873 3555555443 33455667898888877665554333
Q ss_pred --HHHHHHHHhCC----CCCcEEEEeccCCCCC
Q 013508 195 --DAMKLAREVDP----TGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 --~~l~l~~~~~~----~~~r~i~VltK~D~~~ 221 (441)
..+..++.++- .-.++|=|=||+|..+
T Consensus 276 ~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 276 RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 34555666543 2345667777777653
No 267
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.56 E-value=9.1e-08 Score=83.70 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=26.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
..++|+++|.+|+|||||+|+|++....+++
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~ 129 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVG 129 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccccc
Confidence 5678999999999999999999997654443
No 268
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=1.2e-07 Score=85.90 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=23.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+++||.+|+|||||+|+|.+...
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 6799999999999999999998764
No 269
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=4.8e-07 Score=78.75 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=81.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+.+++++|+.++|||.||-..+...|-|....+ +
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~T-------i------------------------------------- 39 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT-------I------------------------------------- 39 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccce-------e-------------------------------------
Confidence 35668999999999999999999999985543311 0
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--cc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~ 193 (441)
| ..|-. -.+.|.+ ....|.++||.|.-. .++++++|++.+...+||.+-.+.+. ..
T Consensus 40 ----G--vefg~--r~~~id~-k~IKlqiwDtaGqe~-------------frsv~~syYr~a~GalLVydit~r~sF~hL 97 (216)
T KOG0098|consen 40 ----G--VEFGA--RMVTIDG-KQIKLQIWDTAGQES-------------FRSVTRSYYRGAAGALLVYDITRRESFNHL 97 (216)
T ss_pred ----e--eeece--eEEEEcC-ceEEEEEEecCCcHH-------------HHHHHHHHhccCcceEEEEEccchhhHHHH
Confidence 0 00000 0111222 234788999999744 37899999999888888765443322 22
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+|.=+++....+.-++++-||+|+....
T Consensus 98 ~~wL~D~rq~~~~NmvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 98 TSWLEDARQHSNENMVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHHHHHHHhcCCCcEEEEEcchhhhhccc
Confidence 445555666655567788889999998665
No 270
>PRK12740 elongation factor G; Reviewed
Probab=98.50 E-value=3.8e-07 Score=98.51 Aligned_cols=70 Identities=14% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
....++||||||..+. ...+..++..+|.+++++++.. +. ......+.+.+...+.|.++|+||+
T Consensus 58 ~~~~i~liDtPG~~~~-------------~~~~~~~l~~aD~vllvvd~~~-~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 58 KGHKINLIDTPGHVDF-------------TGEVERALRVLDGAVVVVCAVG-GV-EPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred CCEEEEEEECCCcHHH-------------HHHHHHHHHHhCeEEEEEeCCC-Cc-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4568999999998542 2456677888998888876543 33 3333344555555688999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|+...
T Consensus 123 D~~~~ 127 (668)
T PRK12740 123 DRAGA 127 (668)
T ss_pred CCCCC
Confidence 98753
No 271
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=3.1e-07 Score=78.98 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=23.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..++++|.+|+|||||+|+|+|...
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3899999999999999999999875
No 272
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.3e-07 Score=80.02 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
--+|+++|--+|||||++..|--.++ +|..||.
T Consensus 17 e~~IlmlGLD~AGKTTILykLk~~E~-------vttvPTi---------------------------------------- 49 (181)
T KOG0070|consen 17 EMRILMVGLDAAGKTTILYKLKLGEI-------VTTVPTI---------------------------------------- 49 (181)
T ss_pred eEEEEEEeccCCCceeeeEeeccCCc-------ccCCCcc----------------------------------------
Confidence 34799999999999999988865443 3335532
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH---
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS--- 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~--- 194 (441)
+|.-..+. . ....++++|.-|..+. +.+.+.|..+.+.+|+||+++..+--.+
T Consensus 50 ------GfnVE~v~----y-kn~~f~vWDvGGq~k~-------------R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~ 105 (181)
T KOG0070|consen 50 ------GFNVETVE----Y-KNISFTVWDVGGQEKL-------------RPLWKHYFQNTQGLIFVVDSSDRERIEEAKE 105 (181)
T ss_pred ------ccceeEEE----E-cceEEEEEecCCCccc-------------ccchhhhccCCcEEEEEEeCCcHHHHHHHHH
Confidence 22222222 1 2568999999998553 6789999999999999987765432111
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcC--cHHHHHcCcccccCCCeE--EEEeCChhhhccCCcHHHH
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV--GIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~--~v~~~s~~~~~~~~~~~~~ 261 (441)
+-.+++..-+..+.++++..||.|+...-+ +..+.+.-..+.- ..|+ +..+.++.++.++.+++..
T Consensus 106 eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~a~~G~GL~egl~wl~~ 175 (181)
T KOG0070|consen 106 ELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTCAISGEGLYEGLDWLSN 175 (181)
T ss_pred HHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeeccccccccHHHHHHHHHH
Confidence 112233333334788999999999865432 2233332222222 4565 4455666665555555443
No 273
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=2.6e-07 Score=89.64 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=67.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.++.+||.||+|||||+|||+....-+..+..||-.|.+=...- +. +. -.....+
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v-~d---~r---------------------l~~L~~~ 57 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYV-PD---CR---------------------LDELAEI 57 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEec-Cc---hH---------------------HHHHHHh
Confidence 47999999999999999999998866788899999886421110 00 00 0000110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
... +.. + + ...+.|||.+|+...+.+| +.+ -+.-...|++.|+|+.+|..
T Consensus 58 ~~c----~~k-~---~----~~~ve~vDIAGLV~GAs~G--eGL----GNkFL~~IRevdaI~hVVr~ 107 (372)
T COG0012 58 VKC----PPK-I---R----PAPVEFVDIAGLVKGASKG--EGL----GNKFLDNIREVDAIIHVVRC 107 (372)
T ss_pred cCC----CCc-E---E----eeeeEEEEecccCCCcccC--CCc----chHHHHhhhhcCeEEEEEEe
Confidence 110 000 0 1 2378999999999877654 222 25556678889999998854
No 274
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.47 E-value=3.9e-07 Score=84.45 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=20.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
+.+.|.|.|.|++|||||+++|..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH
Confidence 567899999999999999999984
No 275
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.46 E-value=1.1e-06 Score=88.41 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=49.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||.... .......+..+. + ..+|+.++|+++ +.. -+++...++.+...-..+-+|+||+|
T Consensus 182 ~~DvViIDTaGr~~~-----d~~lm~El~~i~-~-~~~p~e~lLVld-a~~---Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQ-----EDSLFEEMLQVA-E-AIQPDNIIFVMD-GSI---GQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCEEEEECCCCCcc-----hHHHHHHHHHHh-h-hcCCcEEEEEec-ccc---ChhHHHHHHHHHhccCCcEEEEECcc
Confidence 468999999997543 122222222222 1 235776666664 443 34555566666554567889999999
Q ss_pred CCCCcCcHHHHH
Q 013508 219 LMDKGTNALDVL 230 (441)
Q Consensus 219 ~~~~~~~~~~~l 230 (441)
....+..+..+.
T Consensus 251 ~~argG~aLs~~ 262 (429)
T TIGR01425 251 GHAKGGGALSAV 262 (429)
T ss_pred CCCCccHHhhhH
Confidence 987776555443
No 276
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.45 E-value=5.1e-07 Score=92.29 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=43.3
Q ss_pred cCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-----cHHHHHHHHHhCCCCC-c
Q 013508 136 SPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-----TSDAMKLAREVDPTGE-R 209 (441)
Q Consensus 136 ~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-----~~~~l~l~~~~~~~~~-r 209 (441)
......++|+||||..+. + ..+..++..+|+.|++|++....+. .....+.+..+...+. +
T Consensus 81 ~~~~~~i~liDtPGh~df------------~-~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~ 147 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDF------------I-KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQ 147 (447)
T ss_pred cCCCEEEEEEECCCHHHH------------H-HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCc
Confidence 344568999999997332 2 3345566789998888765432121 0122222333333466 4
Q ss_pred EEEEeccCCCC
Q 013508 210 TFGVLTKLDLM 220 (441)
Q Consensus 210 ~i~VltK~D~~ 220 (441)
.|+++||+|+.
T Consensus 148 iIV~vNKmD~~ 158 (447)
T PLN00043 148 MICCCNKMDAT 158 (447)
T ss_pred EEEEEEcccCC
Confidence 68889999986
No 277
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.4e-06 Score=84.81 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=54.8
Q ss_pred CCcEEEeCCCCCcCccCCC-CccHHHHHHHHHHHhhcC-------------CCeEEEEeccCccccccHHHHHHHHHhCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQ-PDTIVEDIESMVRSYVEK-------------PNSVILAISPANQDIATSDAMKLAREVDP 205 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~~-------------~~~iil~v~~a~~~~~~~~~l~l~~~~~~ 205 (441)
.+|++|||||+.+.-.... -.-+...+.+.-..|+.. .+|.++++.|...++..-+ +.+.+.+..
T Consensus 79 l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D-i~~Mk~l~~ 157 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD-IEFMKKLSK 157 (366)
T ss_pred EeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh-HHHHHHHhc
Confidence 4789999999987543211 122334556666666542 3477888887776664433 445566543
Q ss_pred CCCcEEEEeccCCCCCCcC
Q 013508 206 TGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~~~~ 224 (441)
..++|-|+.|.|.+.+.+
T Consensus 158 -~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 158 -KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred -cccccceeeccccCCHHH
Confidence 678999999999997764
No 278
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=98.44 E-value=2.2e-07 Score=80.71 Aligned_cols=121 Identities=14% Similarity=0.205 Sum_probs=76.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+.+|++.|++|+|||||+|.++..+|.-
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-------------------------------------------------- 36 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-------------------------------------------------- 36 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 357799999999999999999999888710
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc-CccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP-ANQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~-a~~~~~~~ 194 (441)
......+..|-.+.+.+ . ....-|.|+||.|--+. +.+-..+.+.+||.+|+..- ....+.+-
T Consensus 37 qykaTIgadFltKev~V--d-~~~vtlQiWDTAGQERF-------------qsLg~aFYRgaDcCvlvydv~~~~Sfe~L 100 (210)
T KOG0394|consen 37 QYKATIGADFLTKEVQV--D-DRSVTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNNPKSFENL 100 (210)
T ss_pred HhccccchhheeeEEEE--c-CeEEEEEEEecccHHHh-------------hhcccceecCCceEEEEeecCChhhhccH
Confidence 00001123333344432 2 23457899999997553 45566788899998887421 11122221
Q ss_pred H-HH-HHHHHhC---CCCCcEEEEeccCCCCCC
Q 013508 195 D-AM-KLAREVD---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~-~l-~l~~~~~---~~~~r~i~VltK~D~~~~ 222 (441)
+ +. +++.+.+ |..=|.|++-||+|.-..
T Consensus 101 ~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~ 133 (210)
T KOG0394|consen 101 ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG 133 (210)
T ss_pred HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC
Confidence 1 11 2455554 556799999999998653
No 279
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.44 E-value=2.2e-07 Score=78.77 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
-..+|.+||+.++||||||-+++.-.|-|-. |+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~-------~~---------------------------------------- 42 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLH-------PT---------------------------------------- 42 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccC-------Cc----------------------------------------
Confidence 4568999999999999999999887762211 11
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+-++....-.+.+.+ ....|.||||.|.-+ .+.++-+|.+.+..||++-+-...+.-..-
T Consensus 43 -----tIGvDFkvk~m~vdg-~~~KlaiWDTAGqEr-------------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL- 102 (209)
T KOG0080|consen 43 -----TIGVDFKVKVMQVDG-KRLKLAIWDTAGQER-------------FRTLTPSYYRGAQGIILVYDVTSRDTFVKL- 102 (209)
T ss_pred -----eeeeeEEEEEEEEcC-ceEEEEEEeccchHh-------------hhccCHhHhccCceeEEEEEccchhhHHhH-
Confidence 011111222233444 345899999999744 378899999999999998654433221111
Q ss_pred HHHHHHhCC----CCCcEEEEeccCCCCC
Q 013508 197 MKLAREVDP----TGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~----~~~r~i~VltK~D~~~ 221 (441)
-.++++++- ...-.++|-||+|.-.
T Consensus 103 d~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 103 DIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred HHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 124555553 2344578899999653
No 280
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.44 E-value=1.3e-06 Score=81.25 Aligned_cols=38 Identities=32% Similarity=0.337 Sum_probs=29.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC-CCCccccc--ccccc
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR-DFLPRGSG--IVTRR 74 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~-~~lP~~~~--~~Tr~ 74 (441)
+.-.|+|+|.+++|||+|+|.|+|. +.|+.+.+ .||+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~g 46 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKG 46 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccc
Confidence 4557999999999999999999998 23465544 55553
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.1e-06 Score=86.06 Aligned_cols=146 Identities=17% Similarity=0.315 Sum_probs=76.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
-.++|+|+..+|||||+-.|+=. . |.+..+-+ +++.......++.--.|+-+.+...++++
T Consensus 8 ~nl~~iGHVD~GKSTl~GrLly~-~-----G~id~~tm-----------eK~~~ea~~~gK~sf~fawvlD~tkeERe-- 68 (428)
T COG5256 8 LNLVFIGHVDAGKSTLVGRLLYD-L-----GEIDKRTM-----------EKLEKEAKELGKESFKFAWVLDKTKEERE-- 68 (428)
T ss_pred eEEEEEcCCCCCchhhhhhhHHH-h-----CCCCHHHH-----------HHHHHHHHhcCCCceEEEEEecCChhHHh--
Confidence 36899999999999999888732 1 22111110 12221111111111122222222222222
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc------c-
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------I- 191 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~------~- 191 (441)
.+++-+.-...... +...++|+|+||..+ .+.+|+..+ +.+|+.||+|.+.... .
T Consensus 69 ----rGvTi~~~~~~fet-~k~~~tIiDaPGHrd------------FvknmItGa-sqAD~aVLVV~a~~~efE~g~~~~ 130 (428)
T COG5256 69 ----RGVTIDVAHSKFET-DKYNFTIIDAPGHRD------------FVKNMITGA-SQADVAVLVVDARDGEFEAGFGVG 130 (428)
T ss_pred ----cceEEEEEEEEeec-CCceEEEeeCCchHH------------HHHHhhcch-hhccEEEEEEECCCCccccccccC
Confidence 22333322223333 345899999999422 234555433 3478888888654432 1
Q ss_pred -ccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 192 -ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 192 -~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+.+-.-+++.+. -...|+++||+|.++-.
T Consensus 131 gQtrEH~~La~tlG--i~~lIVavNKMD~v~wd 161 (428)
T COG5256 131 GQTREHAFLARTLG--IKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CchhHHHHHHHhcC--CceEEEEEEcccccccC
Confidence 2233444666654 35788999999999743
No 282
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=5.1e-06 Score=81.99 Aligned_cols=156 Identities=18% Similarity=0.267 Sum_probs=81.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccc--cccccccEEEEEEecCCCc---chhHHhhcCCCccccChHHHHHHHH
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKTEDGS---QEYAEFLHLPKRRFTDFSMVRKEIQ 112 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~i~ 112 (441)
...|+++|+.|+||||++..|.+. +...+. ++++--+. + .+.. ..|++....+-....+...+.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~GkkVglI~aDt~----R--iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGKKKTVGFITTDHS----R--IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHcCCcEEEEecCCc----c--hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 357899999999999999999864 211110 12221110 0 0011 1222222222111224444443332
Q ss_pred HHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc
Q 013508 113 DETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (441)
Q Consensus 113 ~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~ 192 (441)
.... ....+++||||||..... ......+..++.. ..++.++|++ +++..
T Consensus 314 ~lk~--------------------~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~--~~PdevlLVL-sATtk-- 363 (436)
T PRK11889 314 YFKE--------------------EARVDYILIDTAGKNYRA-----SETVEEMIETMGQ--VEPDYICLTL-SASMK-- 363 (436)
T ss_pred HHHh--------------------ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhh--cCCCeEEEEE-CCccC--
Confidence 2111 013589999999986531 2222222222221 2366566655 44321
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~ 231 (441)
.++....++.+... ...=+|+||+|.......+..+..
T Consensus 364 ~~d~~~i~~~F~~~-~idglI~TKLDET~k~G~iLni~~ 401 (436)
T PRK11889 364 SKDMIEIITNFKDI-HIDGIVFTKFDETASSGELLKIPA 401 (436)
T ss_pred hHHHHHHHHHhcCC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 44556677777663 456788999999988777666654
No 283
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.42 E-value=1.4e-06 Score=84.03 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=55.3
Q ss_pred CCcEEEeCCCCCcCccCCC-CccHHHHHHHHHHHhhcC--------------CCeEEEEeccCccccccHHHHHHHHHhC
Q 013508 140 VNLTLIDLPGLTKVAVEGQ-PDTIVEDIESMVRSYVEK--------------PNSVILAISPANQDIATSDAMKLAREVD 204 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~~--------------~~~iil~v~~a~~~~~~~~~l~l~~~~~ 204 (441)
.+|++|||||+.+.-.... -+-+...+++.-..|+.+ .+|+++++-|...++.. -.+...+.+.
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~-~DIe~Mk~ls 160 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKP-LDIEAMKRLS 160 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCH-HHHHHHHHHh
Confidence 4899999999987543211 122344556666666642 24777777777666644 4455667775
Q ss_pred CCCCcEEEEeccCCCCCCcC
Q 013508 205 PTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 205 ~~~~r~i~VltK~D~~~~~~ 224 (441)
. ..+.|-|+.|.|.+...+
T Consensus 161 ~-~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 161 K-RVNLIPVIAKADTLTDDE 179 (373)
T ss_pred c-ccCeeeeeeccccCCHHH
Confidence 4 578999999999986653
No 284
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.39 E-value=1.3e-05 Score=75.62 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
+.+.|.+.|.|++|||||+++|.-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 456899999999999999999974
No 285
>PRK13768 GTPase; Provisional
Probab=98.36 E-value=3.1e-06 Score=80.15 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC--CCeEEEEeccCcccccc-----HHHHHHHHHhCCCCCcEEE
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK--PNSVILAISPANQDIAT-----SDAMKLAREVDPTGERTFG 212 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~--~~~iil~v~~a~~~~~~-----~~~l~l~~~~~~~~~r~i~ 212 (441)
.++.+||+||...... .......++ +++.. +++++++++. ...... ...+.+..+. ..+.+.++
T Consensus 97 ~~~~~~d~~g~~~~~~------~~~~~~~~~-~~l~~~~~~~ii~liD~-~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~ 167 (253)
T PRK13768 97 ADYVLVDTPGQMELFA------FRESGRKLV-ERLSGSSKSVVVFLIDA-VLAKTPSDFVSLLLLALSVQL-RLGLPQIP 167 (253)
T ss_pred CCEEEEeCCcHHHHHh------hhHHHHHHH-HHHHhcCCeEEEEEech-HHhCCHHHHHHHHHHHHHHHH-HcCCCEEE
Confidence 4899999999876421 111112233 33332 6666666544 322111 1112222222 34789999
Q ss_pred EeccCCCCCCcC
Q 013508 213 VLTKLDLMDKGT 224 (441)
Q Consensus 213 VltK~D~~~~~~ 224 (441)
|+||+|+.+..+
T Consensus 168 v~nK~D~~~~~~ 179 (253)
T PRK13768 168 VLNKADLLSEEE 179 (253)
T ss_pred EEEhHhhcCchh
Confidence 999999987643
No 286
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.35 E-value=1e-06 Score=74.97 Aligned_cols=159 Identities=21% Similarity=0.263 Sum_probs=91.9
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcch-hHHhhcCCCccccChHHHHHHHHH
Q 013508 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQE-YAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
+..-.+++|||+.-+||||||...+.-+| |--+ -|++ ..+ |+.
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkf-aels-----dptv---------gvdffar--------------------- 48 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKF-AELS-----DPTV---------GVDFFAR--------------------- 48 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcc-cccC-----CCcc---------chHHHHH---------------------
Confidence 34456799999999999999999998776 2111 2221 000 000
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-- 191 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-- 191 (441)
.. ++..-....|.++||.|.-+ .+.++++|.++.-.++++.+-.|..-
T Consensus 49 li-----------------e~~pg~riklqlwdtagqer-------------frsitksyyrnsvgvllvyditnr~sfe 98 (213)
T KOG0091|consen 49 LI-----------------ELRPGYRIKLQLWDTAGQER-------------FRSITKSYYRNSVGVLLVYDITNRESFE 98 (213)
T ss_pred HH-----------------hcCCCcEEEEEEeeccchHH-------------HHHHHHHHhhcccceEEEEeccchhhHH
Confidence 00 12222345789999999743 37999999999887777765544321
Q ss_pred ccHHHHHHHHH-hC-CCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 192 ATSDAMKLARE-VD-PTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 192 ~~~~~l~l~~~-~~-~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
.-..++.-|.. +. |...-..+|-+|+|+........+-.+......+.-|+....+++.+++....++
T Consensus 99 hv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ml 168 (213)
T KOG0091|consen 99 HVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDML 168 (213)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHH
Confidence 11233333322 33 5555667889999998654321111111122334456777777765555444443
No 287
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.32 E-value=1.1e-05 Score=68.11 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=52.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHH-HHHHhCC----CCCcEEEEe
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMK-LAREVDP----TGERTFGVL 214 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~-l~~~~~~----~~~r~i~Vl 214 (441)
.+|.|.||.|+.... .++-+.|++-+|+.+|+-++++. ..-+.+. +-+++|. ...++++..
T Consensus 60 E~l~lyDTaGlq~~~------------~eLprhy~q~aDafVLVYs~~d~--eSf~rv~llKk~Idk~KdKKEvpiVVLa 125 (198)
T KOG3883|consen 60 EQLRLYDTAGLQGGQ------------QELPRHYFQFADAFVLVYSPMDP--ESFQRVELLKKEIDKHKDKKEVPIVVLA 125 (198)
T ss_pred heEEEeecccccCch------------hhhhHhHhccCceEEEEecCCCH--HHHHHHHHHHHHHhhccccccccEEEEe
Confidence 478999999996531 47889999999999998876543 2222222 3344443 346788889
Q ss_pred ccCCCCCCcCcHHHHH
Q 013508 215 TKLDLMDKGTNALDVL 230 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (441)
||.|+.++.+.-.++.
T Consensus 126 N~rdr~~p~~vd~d~A 141 (198)
T KOG3883|consen 126 NKRDRAEPREVDMDVA 141 (198)
T ss_pred chhhcccchhcCHHHH
Confidence 9999987765434443
No 288
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.31 E-value=1e-06 Score=80.04 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=42.1
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||..... .+..+.++++.. .+ .++-++|++ +++.+. +.+..+..........=+|+||.|
T Consensus 83 ~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~-~~-~~~~~~LVl-sa~~~~---~~~~~~~~~~~~~~~~~lIlTKlD 151 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRD-----EELLEELKKLLE-AL-NPDEVHLVL-SATMGQ---EDLEQALAFYEAFGIDGLILTKLD 151 (196)
T ss_dssp TSSEEEEEE-SSSSTH-----HHHHHHHHHHHH-HH-SSSEEEEEE-EGGGGG---HHHHHHHHHHHHSSTCEEEEESTT
T ss_pred CCCEEEEecCCcchhh-----HHHHHHHHHHhh-hc-CCccceEEE-ecccCh---HHHHHHHHHhhcccCceEEEEeec
Confidence 3589999999986531 222223333222 22 455555555 444432 222222222111223467799999
Q ss_pred CCCCcCcHHHHHc
Q 013508 219 LMDKGTNALDVLE 231 (441)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (441)
.......+.+++.
T Consensus 152 et~~~G~~l~~~~ 164 (196)
T PF00448_consen 152 ETARLGALLSLAY 164 (196)
T ss_dssp SSSTTHHHHHHHH
T ss_pred CCCCcccceeHHH
Confidence 9877766666543
No 289
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.31 E-value=1.1e-06 Score=83.54 Aligned_cols=103 Identities=20% Similarity=0.304 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-+.|.+||-||+||||++|+|+....-|-....||--|.+-+..-. . ..+ +
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~-d--~Rf-------------------------d 70 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVP-D--SRF-------------------------D 70 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecC-c--hHH-------------------------H
Confidence 45689999999999999999999988767778899988865322110 0 000 0
Q ss_pred hhcCCCCCcCCcceEEEEecCC---CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPN---VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~---~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
..+ ++++|. ...|+++|..|+.+.+..|+. + -+--.+.|++.|+|+-+|..
T Consensus 71 ~l~-------------~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~G--L----GN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 71 LLC-------------PIYGPKSKVPAFLTVYDIAGLVKGASAGEG--L----GNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred HHH-------------HhcCCcceeeeeEEEEeecccccCcccCcC--c----hHHHHHhhhhccceeEEEEe
Confidence 001 133332 237899999999987755432 2 35566778889998888743
No 290
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.30 E-value=3.3e-06 Score=83.21 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=63.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC-CcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.++.+||.||+|||||+|+|++... -+.....||..|..=.... +....+ ++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v-~d~r~d--------------------~L~~~~-- 59 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNP-SDPRLD--------------------LLAIYI-- 59 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEe-chhHHH--------------------HHHHHh--
Confidence 4689999999999999999999975 4455678888885422211 110000 000000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEecc
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISP 186 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~ 186 (441)
.. .. .....+.++|.||+...+.++.. . -+-..+.+++.|+++.+|..
T Consensus 60 -~~-------------~~-~~~a~i~~~DiaGlv~gAs~g~G--l----gn~fL~~ir~~d~l~hVvr~ 107 (368)
T TIGR00092 60 -KP-------------EK-VPPTTTEFVDIAGLVGGASKGEG--L----GNQFLANIREVDIIQHVVRC 107 (368)
T ss_pred -CC-------------cC-cCCceEEEEeccccccchhcccC--c----chHHHHHHHhCCEEEEEEeC
Confidence 00 00 01236799999999986543321 1 24466778889988888754
No 291
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=2e-06 Score=76.57 Aligned_cols=120 Identities=15% Similarity=0.252 Sum_probs=80.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+.+||++|++++|||-||...+.-.| .+-++.++-+.+.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF-----~~~SksTIGvef~---------------------------------- 52 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEF-----SLESKSTIGVEFA---------------------------------- 52 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccccc-----CcccccceeEEEE----------------------------------
Confidence 4678899999999999999999998877 4333333221111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cc-cc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DI-AT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~-~~ 193 (441)
... +.+.+ ......||||.|.-+. +.+.-.|.+.+...+|+-+-... .+ ..
T Consensus 53 -----------t~t--~~vd~-k~vkaqIWDTAGQERy-------------rAitSaYYrgAvGAllVYDITr~~Tfenv 105 (222)
T KOG0087|consen 53 -----------TRT--VNVDG-KTVKAQIWDTAGQERY-------------RAITSAYYRGAVGALLVYDITRRQTFENV 105 (222)
T ss_pred -----------eec--eeecC-cEEEEeeecccchhhh-------------ccccchhhcccceeEEEEechhHHHHHHH
Confidence 001 11222 2346789999997543 57788999998888777643322 11 23
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..|++-++.......++++|-||+|+..
T Consensus 106 ~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 106 ERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 4566656655556789999999999976
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.8e-06 Score=91.93 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=83.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.....|.|+|+-.+|||||.++|+-.. |..++ +-++. .+..+.|+.+. +.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~t------G~i~k-~G~v~-----------------~g~~~~D~~e~------Eq 57 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYT------GIISK-IGEVH-----------------DGAATMDWMEQ------EQ 57 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHc------CCcCC-Ccccc-----------------CCCccCCCcHH------HH
Confidence 356689999999999999999998432 22222 10000 00112222221 11
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+ ++-.+....+.+...+ ...++||||||..+.. .-+.+.++-.|..|++|+ +..+...+
T Consensus 58 e----RGITI~saa~s~~~~~--~~~iNlIDTPGHVDFt-------------~EV~rslrvlDgavvVvd-aveGV~~Q- 116 (697)
T COG0480 58 E----RGITITSAATTLFWKG--DYRINLIDTPGHVDFT-------------IEVERSLRVLDGAVVVVD-AVEGVEPQ- 116 (697)
T ss_pred h----cCCEEeeeeeEEEEcC--ceEEEEeCCCCccccH-------------HHHHHHHHhhcceEEEEE-CCCCeeec-
Confidence 1 1222334444444333 4689999999998863 335566666777777664 44455333
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
...+.++++..+.|.|+++||+|.+...
T Consensus 117 TEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 117 TETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHHHHHHhhcCCCeEEEEECccccccC
Confidence 3336677788899999999999998543
No 293
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.29 E-value=9.3e-07 Score=86.56 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=27.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccccccccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (441)
-.+.|||-||+|||||||+|+|... ..++++|
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----~~~s~~P 164 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----AKTSNRP 164 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----eeeCCCC
Confidence 3599999999999999999999986 5555555
No 294
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.29 E-value=2.6e-06 Score=89.72 Aligned_cols=304 Identities=27% Similarity=0.282 Sum_probs=214.8
Q ss_pred HHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHH
Q 013508 91 AEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV 170 (441)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v 170 (441)
..+.+.+...+.++..+..+....+....+...++...++.+.+..+....++.+|.||+...+...++..+......+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (546)
T COG0699 4 FEFTHAPIFRFLDFSRVRSEKEKETLKDDGRNSGITEVIIELKIAAERLLQLTDVDLPGLRKVPLSLEPEDIAQEDELLD 83 (546)
T ss_pred chhcccchhhhhhHHHHHHHHHHHHhhcccccCCCccccchhhhhhhHHHHhhccccCCccccccccCchhhHHHHHHHH
Confidence 34555556667788899999988888888888889999999888888888999999999999888777777766555777
Q ss_pred HHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChh
Q 013508 171 RSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA 250 (441)
Q Consensus 171 ~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~ 250 (441)
..++..++++|....+.+.+..+......++..++ +.++.+.++.+...... ...++..+.+....
T Consensus 84 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 149 (546)
T COG0699 84 LGKIEIENALILLGIAPNADEEAELSIEVIREADR-------VPTKINFLNGGTNLTLI-------LGNGDVLVVDALET 149 (546)
T ss_pred hhHHHHHHHHHhcchhhhhhhccchhhHhhhhhcc-------hhHHHHHHhcCCceeee-------eccccccccCchhH
Confidence 78888888888888888877777777777776654 67777766655432111 45566666666666
Q ss_pred hhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 013508 251 DINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAV 330 (441)
Q Consensus 251 ~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~ 330 (441)
++............+..+|..++.+.+....++...+...+...+..++....|............ .+..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--- 220 (546)
T COG0699 150 DIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLLPKYDKLQDVIQLSQ------DLFEN--- 220 (546)
T ss_pred HHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhcChhhhhHhhhcccc------cccch---
Confidence 777777777778888899999988888777788889999999998888888877654443333321 12111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCchhHhHHhhhHHHHhccCCccccCchHhHHHHHHhhcCCCCcccCChHH
Q 013508 331 DAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVVSEADGYQPHLIAPEQG 410 (441)
Q Consensus 331 ~~~~~~~~l~~~~~~f~~~~~~~i~g~~~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i~n~~g~~~~~~~p~~~ 410 (441)
.+......|...+.....|.+ +... ..............+....-++.+.+|..+....+
T Consensus 221 -------~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (546)
T COG0699 221 -------EVLAVIQTLLKRLSELVRGAR-----IRLN--------IILFSDLEEVSDSPVLLKELASKGERPSLLSGLTL 280 (546)
T ss_pred -------HHHHHHHHHHHHHHHHhccch-----hhhh--------hcccchHHHhhhhhhHHHHHcccCCCccccccccc
Confidence 233444455555553444433 2222 00111111233445666677888888888889999
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHhhh
Q 013508 411 YRRLIEGSLSYFRGPAEASADAVSFPS 437 (441)
Q Consensus 411 f~~li~~~i~~~~~P~~~c~~~v~~~l 437 (441)
+..++..++..+..++.+|+..+..+|
T Consensus 281 ~~~~v~~~~~~~~~~~~~~~~~~~~~l 307 (546)
T COG0699 281 LDTLVETPIGQFDTQINQLLRKLISEL 307 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877666554
No 295
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=2.6e-06 Score=76.05 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=45.9
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc---CCCeEEEEeccCccccccHHHHHHHHH----h--CCCCCcEE
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLARE----V--DPTGERTF 211 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iil~v~~a~~~~~~~~~l~l~~~----~--~~~~~r~i 211 (441)
.+++||.||..+. +....+|+. ..-+||++|+++..+-...+.-+++-. - ...+.+++
T Consensus 83 ~~~LVD~PGH~rl-------------R~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vL 149 (238)
T KOG0090|consen 83 NVTLVDLPGHSRL-------------RRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVL 149 (238)
T ss_pred ceEEEeCCCcHHH-------------HHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEE
Confidence 4899999998653 455556666 467888888776654333333322211 1 24578899
Q ss_pred EEeccCCCCCCc
Q 013508 212 GVLTKLDLMDKG 223 (441)
Q Consensus 212 ~VltK~D~~~~~ 223 (441)
+..||-|+....
T Consensus 150 IaCNKqDl~tAk 161 (238)
T KOG0090|consen 150 IACNKQDLFTAK 161 (238)
T ss_pred EEecchhhhhcC
Confidence 999999997544
No 296
>PRK12288 GTPase RsgA; Reviewed
Probab=98.26 E-value=4.5e-06 Score=82.41 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFL 64 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~l 64 (441)
.++++|.+|+|||||||+|+|...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~ 231 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI 231 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce
Confidence 4899999999999999999998653
No 297
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.23 E-value=1.1e-05 Score=74.66 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=81.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec----CC-------CcchhHHh-----hcCCCc
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT----ED-------GSQEYAEF-----LHLPKR 99 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~----~~-------~~~~~~~~-----~~~~~~ 99 (441)
...+-|+|+|--||||+|++..|.+.-. .--| .|-++.|-.. +- .+..|.+. ++..|.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~-----~~~~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGg 90 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH-----AKKT-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGG 90 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh-----hccC-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcc
Confidence 3566799999999999999999986421 1011 1444444221 10 12334433 222333
Q ss_pred ccc-------ChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHH
Q 013508 100 RFT-------DFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRS 172 (441)
Q Consensus 100 ~~~-------~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~ 172 (441)
..+ .|++|...|+... ...+..||||||.+..-+=.-+..+. +..
T Consensus 91 I~TsLNLF~tk~dqv~~~iek~~----------------------~~~~~~liDTPGQIE~FtWSAsGsII------te~ 142 (366)
T KOG1532|consen 91 IVTSLNLFATKFDQVIELIEKRA----------------------EEFDYVLIDTPGQIEAFTWSASGSII------TET 142 (366)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh----------------------cccCEEEEcCCCceEEEEecCCccch------Hhh
Confidence 333 3444444443322 12478999999998643221122221 222
Q ss_pred hhcC-CCeEEEEeccCccc-cc--cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 173 YVEK-PNSVILAISPANQD-IA--TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 173 yi~~-~~~iil~v~~a~~~-~~--~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+... |-+++++|+..... .. -+..+....-+-...-|+|+|+||+|..+..
T Consensus 143 lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~ 197 (366)
T KOG1532|consen 143 LASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSE 197 (366)
T ss_pred HhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccH
Confidence 2222 45555555432211 11 1333433344445678999999999998764
No 298
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.23 E-value=8.2e-06 Score=71.56 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
|.++++|..+||||||++.+++.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 67899999999999999999876
No 299
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.23 E-value=1.7e-06 Score=83.51 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCc
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLP 65 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP 65 (441)
...+|+|+|.+|+|||||+|+|+|.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~ 148 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK 148 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc
Confidence 34579999999999999999999987633
No 300
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.23 E-value=1.6e-06 Score=83.29 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
...+|+|||.||+|||||+|+|+|....++
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 346799999999999999999999875333
No 301
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=6.7e-06 Score=77.46 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..++++|.+|+|||||+|+|+|...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhh
Confidence 4799999999999999999998754
No 302
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.22 E-value=8.8e-06 Score=73.90 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=72.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|..++|||+|.-.+++..|.+.- .|+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y------~pti---------------------------------------- 36 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY------DPTI---------------------------------------- 36 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc------CCCc----------------------------------------
Confidence 457999999999999999999988763221 1110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~-~~ 195 (441)
..+-..++ .+. .....+.|+||+|.... ..|-..|+...+..+++..-.+. .+.. ..
T Consensus 37 -----ed~y~k~~--~v~-~~~~~l~ilDt~g~~~~-------------~~~~~~~~~~~~gF~lVysitd~~SF~~~~~ 95 (196)
T KOG0395|consen 37 -----EDSYRKEL--TVD-GEVCMLEILDTAGQEEF-------------SAMRDLYIRNGDGFLLVYSITDRSSFEEAKQ 95 (196)
T ss_pred -----cccceEEE--EEC-CEEEEEEEEcCCCcccC-------------hHHHHHhhccCcEEEEEEECCCHHHHHHHHH
Confidence 00001111 122 23457889999994332 36777889999988777643322 1111 11
Q ss_pred HHH-HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMK-LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~-l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+ +.+..+....|+++|.||+|+....
T Consensus 96 l~~~I~r~~~~~~~PivlVGNK~Dl~~~R 124 (196)
T KOG0395|consen 96 LREQILRVKGRDDVPIILVGNKCDLERER 124 (196)
T ss_pred HHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence 112 2222344456999999999998643
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=98.21 E-value=2.9e-06 Score=83.82 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLP 65 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP 65 (441)
.++|+|.+|+|||||||+|+|...+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~ 199 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELR 199 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccc
Confidence 48999999999999999999876433
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=1.3e-05 Score=78.92 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=79.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccc--cccccccEEEEEEec-CCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS--GIVTRRPLVLQLHKT-EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~--~~~Tr~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
-..|+++|++|+||||++..|... +...+. +++|--|. +.. ...+..|++....+-....+..++.+.+...
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~~g~~V~lItaDty----R~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLKQNRTVGFITTDTF----RSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHcCCeEEEEeCCcc----CccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 345789999999999999999853 222221 11111110 000 0011223332222211223444444433321
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccc
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIA 192 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~ 192 (441)
.. ....+++||||||..... .+.+.++ ..+.. .++.++| |.+++. .
T Consensus 281 ~~--------------------~~~~D~VLIDTAGr~~~d--------~~~l~EL-~~l~~~~~p~~~~L-VLsag~--~ 328 (407)
T PRK12726 281 TY--------------------VNCVDHILIDTVGRNYLA--------EESVSEI-SAYTDVVHPDLTCF-TFSSGM--K 328 (407)
T ss_pred Hh--------------------cCCCCEEEEECCCCCccC--------HHHHHHH-HHHhhccCCceEEE-ECCCcc--c
Confidence 10 023589999999996521 2222222 22322 3554444 444432 2
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~ 231 (441)
.++....++.+... ...-+|+||.|.......+..+..
T Consensus 329 ~~d~~~i~~~f~~l-~i~glI~TKLDET~~~G~~Lsv~~ 366 (407)
T PRK12726 329 SADVMTILPKLAEI-PIDGFIITKMDETTRIGDLYTVMQ 366 (407)
T ss_pred HHHHHHHHHhcCcC-CCCEEEEEcccCCCCccHHHHHHH
Confidence 34555566665543 345678999999887776666543
No 305
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.20 E-value=6.1e-06 Score=76.59 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=69.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccc--ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+|+++|..+|||||..+.+.+.- .|.+.. -.|..+.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~-~p~dT~~L~~T~~ve----------------------------------------- 38 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY-SPRDTLRLEPTIDVE----------------------------------------- 38 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEE-----------------------------------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCC-CchhccccCCcCCce-----------------------------------------
Confidence 58999999999999999999763 354432 1111111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc----
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---- 193 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~---- 193 (441)
.-.+...+...+.+||.||....... . ....-....++..++|+|++..+.++..
T Consensus 39 -------------~~~v~~~~~~~l~iwD~pGq~~~~~~-----~---~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~ 97 (232)
T PF04670_consen 39 -------------KSHVRFLSFLPLNIWDCPGQDDFMEN-----Y---FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAY 97 (232)
T ss_dssp -------------EEEEECTTSCEEEEEEE-SSCSTTHT-----T---HTCCHHHHHCTESEEEEEEETT-STCHHHHHH
T ss_pred -------------EEEEecCCCcEEEEEEcCCccccccc-----c---ccccHHHHHhccCEEEEEEEcccccHHHHHHH
Confidence 11243345668999999999764211 0 0011223356778888887654344321
Q ss_pred -HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 -~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
...++.+.+..| +..+.+.+.|+|++.++
T Consensus 98 ~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 98 LSDCIEALRQYSP-NIKVFVFIHKMDLLSED 127 (232)
T ss_dssp HHHHHHHHHHHST-T-EEEEEEE-CCCS-HH
T ss_pred HHHHHHHHHHhCC-CCeEEEEEeecccCCHH
Confidence 223445667777 67899999999998654
No 306
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=3.9e-05 Score=73.00 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=49.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..++.||||||-.... ....+.+.++.. ..+++-++|++ +++.. .++....++.+... ...=+|+||.|
T Consensus 154 ~~D~ViIDt~Gr~~~~-----~~~l~el~~~~~--~~~~~~~~LVl-~a~~~--~~d~~~~~~~f~~~-~~~~~I~TKlD 222 (270)
T PRK06731 154 RVDYILIDTAGKNYRA-----SETVEEMIETMG--QVEPDYICLTL-SASMK--SKDMIEIITNFKDI-HIDGIVFTKFD 222 (270)
T ss_pred CCCEEEEECCCCCcCC-----HHHHHHHHHHHh--hhCCCeEEEEE-cCccC--HHHHHHHHHHhCCC-CCCEEEEEeec
Confidence 3589999999986531 112222222221 22466555555 44321 45666777877763 45667899999
Q ss_pred CCCCcCcHHHHHc
Q 013508 219 LMDKGTNALDVLE 231 (441)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (441)
.......+..+..
T Consensus 223 et~~~G~~l~~~~ 235 (270)
T PRK06731 223 ETASSGELLKIPA 235 (270)
T ss_pred CCCCccHHHHHHH
Confidence 9988776666644
No 307
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.18 E-value=3.5e-06 Score=74.93 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+.++++|.+|+|||||+|+|++..+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~ 140 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKV 140 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999999999875
No 308
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=6.8e-06 Score=87.82 Aligned_cols=154 Identities=21% Similarity=0.294 Sum_probs=80.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcc-cc---cccccccEEEEEEec-CCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPR-GS---GIVTRRPLVLQLHKT-EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~-~~---~~~Tr~p~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
.|++||.+|+||||.+..|.+.-. +. |. .++|--. ++-. .+....|++....+-....+..++.+.+..
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt----~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~- 260 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV-AREGADQLALLTTDS----FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA- 260 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcc----cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-
Confidence 578999999999999999998631 11 11 1111110 0000 001223444444333333344444433321
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
. ...+++||||||..... ..+.+.+..+. . ...+.-++||+ ++... .+
T Consensus 261 ---~-------------------~~~D~VLIDTAGRs~~d-----~~l~eel~~l~-~-~~~p~e~~LVL-sAt~~--~~ 308 (767)
T PRK14723 261 ---L-------------------GDKHLVLIDTVGMSQRD-----RNVSEQIAMLC-G-VGRPVRRLLLL-NAASH--GD 308 (767)
T ss_pred ---h-------------------cCCCEEEEeCCCCCccC-----HHHHHHHHHHh-c-cCCCCeEEEEE-CCCCc--HH
Confidence 1 12379999999986531 12222222221 1 22355555555 44421 22
Q ss_pred HHHHHHHHhCCCC--CcEEEEeccCCCCCCcCcHHHHHc
Q 013508 195 DAMKLAREVDPTG--ERTFGVLTKLDLMDKGTNALDVLE 231 (441)
Q Consensus 195 ~~l~l~~~~~~~~--~r~i~VltK~D~~~~~~~~~~~l~ 231 (441)
+..++++.+.... ..+=+|+||.|.......+.++..
T Consensus 309 ~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 309 TLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred HHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 3333555554321 346688999999988877777654
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=98.16 E-value=1.8e-05 Score=77.55 Aligned_cols=82 Identities=30% Similarity=0.396 Sum_probs=50.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||.... +......++.+.+ ..+++.++|++ ++.. .++++..++.+...-...-+|+||+|
T Consensus 222 ~~DvVLIDTaGr~~~-----~~~lm~eL~~i~~--~~~pd~~iLVl-~a~~---g~d~~~~a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 222 GIDVVLIDTAGRMHT-----DANLMDELKKIVR--VTKPDLVIFVG-DALA---GNDAVEQAREFNEAVGIDGVILTKVD 290 (336)
T ss_pred CCCEEEEECCCccCC-----cHHHHHHHHHHHH--hhCCceEEEee-cccc---chhHHHHHHHHHhcCCCCEEEEeeec
Confidence 357999999999753 2223333333322 22577666655 4443 34666666665543345788999999
Q ss_pred CCCCcCcHHHHHc
Q 013508 219 LMDKGTNALDVLE 231 (441)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (441)
....+..+..+..
T Consensus 291 ~~~~~G~~ls~~~ 303 (336)
T PRK14974 291 ADAKGGAALSIAY 303 (336)
T ss_pred CCCCccHHHHHHH
Confidence 9887776665543
No 310
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.16 E-value=1.9e-06 Score=75.08 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..++++|..|+|||||+|+|++...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999999854
No 311
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.16 E-value=1.1e-05 Score=82.02 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.--+||+||+.|+|||||+-+|++..|.| .+.-|-|-+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~---~VP~rl~~i--------------------------------------- 45 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVD---AVPRRLPRI--------------------------------------- 45 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccc---cccccCCcc---------------------------------------
Confidence 34589999999999999999999998722 222222210
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEe--cc-Ccccccc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAI--SP-ANQDIAT 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v--~~-a~~~~~~ 193 (441)
.++. =..|...+.++||++--.+ . +..+.+-++.+|.|.++- +. ...|-.+
T Consensus 46 ~IPa-------------dvtPe~vpt~ivD~ss~~~---------~----~~~l~~EirkA~vi~lvyavd~~~T~D~is 99 (625)
T KOG1707|consen 46 LIPA-------------DVTPENVPTSIVDTSSDSD---------D----RLCLRKEIRKADVICLVYAVDDESTVDRIS 99 (625)
T ss_pred ccCC-------------ccCcCcCceEEEecccccc---------h----hHHHHHHHhhcCEEEEEEecCChHHhhhhh
Confidence 0000 1234555689999983221 1 344566677888655543 22 3335556
Q ss_pred HHHHHHHHHhC--CCCCcEEEEeccCCCCCCcC
Q 013508 194 SDAMKLAREVD--PTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 194 ~~~l~l~~~~~--~~~~r~i~VltK~D~~~~~~ 224 (441)
..|+-++++.. ....|+|+|-||.|......
T Consensus 100 t~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~ 132 (625)
T KOG1707|consen 100 TKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN 132 (625)
T ss_pred hhhhhhhhcccCCCccCCEEEEeeccCCccccc
Confidence 77888888764 34789999999999986554
No 312
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.14 E-value=2.8e-06 Score=84.66 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..+++||.+|+|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999999999864
No 313
>PRK13796 GTPase YqeH; Provisional
Probab=98.13 E-value=2.4e-06 Score=85.24 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..++|||.+|+|||||+|+|++..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhc
Confidence 469999999999999999999754
No 314
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.13 E-value=1.5e-06 Score=72.68 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-ccc-cHHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIA-TSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~-~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
...|.|+||.|- +..+.+...|.+.++.+|++-+-.|. .+. ...+++-++.--+ ..+-++|-||
T Consensus 56 ~VkLqIwDtAGq-------------ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK 121 (198)
T KOG0079|consen 56 RVKLQIWDTAGQ-------------ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNK 121 (198)
T ss_pred EEEEEEeecccH-------------HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccC
Confidence 357899999996 34478999999999988887544332 222 2455555554333 4678999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
.|..+..
T Consensus 122 ~d~~~Rr 128 (198)
T KOG0079|consen 122 NDDPERR 128 (198)
T ss_pred CCCccce
Confidence 9987554
No 315
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.13 E-value=3.7e-05 Score=75.08 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH---Hhhc-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR---SYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
..+++||||||..... ....+.++.+.+ ..+. .++-.+|++ +++. .++.+.-++.....-...-+|+
T Consensus 196 ~~D~ViIDTaGr~~~~-----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl-~a~~---g~~~~~~a~~f~~~~~~~giIl 266 (318)
T PRK10416 196 GIDVLIIDTAGRLHNK-----TNLMEELKKIKRVIKKADPDAPHEVLLVL-DATT---GQNALSQAKAFHEAVGLTGIIL 266 (318)
T ss_pred CCCEEEEeCCCCCcCC-----HHHHHHHHHHHHHHhhhcCCCCceEEEEE-ECCC---ChHHHHHHHHHHhhCCCCEEEE
Confidence 4689999999996542 222233333322 2222 356555655 4443 2334444455443335678999
Q ss_pred ccCCCCCCcCcHHHHH
Q 013508 215 TKLDLMDKGTNALDVL 230 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (441)
||+|....+..+..++
T Consensus 267 TKlD~t~~~G~~l~~~ 282 (318)
T PRK10416 267 TKLDGTAKGGVVFAIA 282 (318)
T ss_pred ECCCCCCCccHHHHHH
Confidence 9999887776666665
No 316
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=7.1e-06 Score=81.30 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-.++++|++|+||||++..|.+.
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 317
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.11 E-value=3.6e-06 Score=76.84 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.-.+|+++|-||+||||||..|++..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~ 86 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH 86 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch
Confidence 34689999999999999999999764
No 318
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.10 E-value=1.4e-05 Score=69.84 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+++++|.+|+||||++|+|.+...
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~ 126 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHS 126 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999998654
No 319
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.1e-05 Score=81.26 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=76.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
++..++||-.--.|||||...|+..- | |..+. ... .++.+.++-+++
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~t------g--~i~~~-------------------~~q------~q~LDkl~vERE 105 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELT------G--TIDNN-------------------IGQ------EQVLDKLQVERE 105 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------C--CCCCC-------------------Cch------hhhhhhhhhhhh
Confidence 45579999999999999999998642 2 11110 001 122222322222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+ | -.+....-.+-.......-|.+|||||..+... -|.+.+.-.+.++|+|+ |+.+...|..
T Consensus 106 R--G--ITIkaQtasify~~~~~ylLNLIDTPGHvDFs~-------------EVsRslaac~G~lLvVD-A~qGvqAQT~ 167 (650)
T KOG0462|consen 106 R--G--ITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG-------------EVSRSLAACDGALLVVD-ASQGVQAQTV 167 (650)
T ss_pred c--C--cEEEeeeeEEEEEcCCceEEEeecCCCcccccc-------------eehehhhhcCceEEEEE-cCcCchHHHH
Confidence 2 2 112222222222232335689999999988642 23344445788888775 5556655554
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+...+ ..+-..|.|+||+|+-..
T Consensus 168 anf~lAf-e~~L~iIpVlNKIDlp~a 192 (650)
T KOG0462|consen 168 ANFYLAF-EAGLAIIPVLNKIDLPSA 192 (650)
T ss_pred HHHHHHH-HcCCeEEEeeeccCCCCC
Confidence 4333222 347889999999998643
No 320
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.08 E-value=2.6e-06 Score=85.12 Aligned_cols=33 Identities=36% Similarity=0.515 Sum_probs=27.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCccccccccccc
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (441)
.-.|.+||-||+||||+||+|+|.+. .-+|+.|
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk-----VsVS~TP 346 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK-----VSVSSTP 346 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce-----eeeecCC
Confidence 45788999999999999999999987 5556555
No 321
>PTZ00099 rab6; Provisional
Probab=98.08 E-value=8.3e-06 Score=72.87 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=69.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..++.|+||||.... +.+...|++.++++|++++..+.. +.. ..++..+........++++|.||
T Consensus 28 ~v~l~iwDt~G~e~~-------------~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 28 PVRLQLWDTAGQERF-------------RSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEECCChHHh-------------hhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 468899999998543 456778899999988887654421 211 12333232233335778999999
Q ss_pred CCCCCCcC-cHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHHHHHhHh
Q 013508 217 LDLMDKGT-NALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREYF 269 (441)
Q Consensus 217 ~D~~~~~~-~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff 269 (441)
+|+..... ...+... .....+..|+.+...+..++...+.++.....+.+-+
T Consensus 95 ~DL~~~~~v~~~e~~~-~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQ-KAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cccccccCCCHHHHHH-HHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 99864321 1111111 1112233466777777777777777666666554433
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=1.6e-05 Score=72.22 Aligned_cols=81 Identities=17% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCcEEEeCCCCCcCccCCC-CccHHHHHHHHHHHhhc------------C--CCeEEEEeccCccccccHHHHHHHHHhC
Q 013508 140 VNLTLIDLPGLTKVAVEGQ-PDTIVEDIESMVRSYVE------------K--PNSVILAISPANQDIATSDAMKLAREVD 204 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~-~~~~~~~i~~~v~~yi~------------~--~~~iil~v~~a~~~~~~~~~l~l~~~~~ 204 (441)
.+|++|||||+.+.-..+. =+-+...+.+.-.+|++ . .+|+++++-+....+..- .+++++.+.
T Consensus 104 lkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrpl-DieflkrLt 182 (336)
T KOG1547|consen 104 LKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPL-DIEFLKRLT 182 (336)
T ss_pred EEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcc-cHHHHHHHh
Confidence 4789999999976322110 01133333344344433 1 347777776655444222 233444443
Q ss_pred CCCCcEEEEeccCCCCCC
Q 013508 205 PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 205 ~~~~r~i~VltK~D~~~~ 222 (441)
. -.++|-|+-|.|.+.-
T Consensus 183 ~-vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 183 E-VVNVVPVIAKADTLTL 199 (336)
T ss_pred h-hheeeeeEeecccccH
Confidence 2 2568999999998743
No 323
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=2e-05 Score=66.35 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=82.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..|.+++|+|+.++|||-||..++..+| --++ ...
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf-kDds----sHT---------------------------------------- 41 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKF-KDDS----SHT---------------------------------------- 41 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhh-cccc----cce----------------------------------------
Confidence 4688999999999999999999998776 1000 000
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--cc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~ 193 (441)
.+..|-..+|.+. -....|.||||.|.-+ .+..+++|.+.+...+|+-+..+.|. +.
T Consensus 42 -----iGveFgSrIinVG---gK~vKLQIWDTAGQEr-------------FRSVtRsYYRGAAGAlLVYD~TsrdsfnaL 100 (214)
T KOG0086|consen 42 -----IGVEFGSRIVNVG---GKTVKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRDSFNAL 100 (214)
T ss_pred -----eeeeecceeeeec---CcEEEEEEeecccHHH-------------HHHHHHHHhccccceEEEEeccchhhHHHH
Confidence 0122333333321 2345789999999643 47999999999887778766555442 22
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..++.=++.+.+...-+|++-||-|+-...
T Consensus 101 tnWL~DaR~lAs~nIvviL~GnKkDL~~~R 130 (214)
T KOG0086|consen 101 TNWLTDARTLASPNIVVILCGNKKDLDPER 130 (214)
T ss_pred HHHHHHHHhhCCCcEEEEEeCChhhcChhh
Confidence 345666777777777778888999986544
No 324
>PRK00098 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.8e-05 Score=76.82 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
-.++++|.+|+|||||+|+|+|...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3689999999999999999999754
No 325
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.02 E-value=1.1e-05 Score=79.84 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...+.+|||||.-+... -+.+-++-.|.++|+|++....+ .|.-+ .+++.-..|-+-|+|+||+
T Consensus 66 ~~~~INIvDTPGHADFGG-------------EVERvl~MVDgvlLlVDA~EGpM-PQTrF-VlkKAl~~gL~PIVVvNKi 130 (603)
T COG1217 66 NGTRINIVDTPGHADFGG-------------EVERVLSMVDGVLLLVDASEGPM-PQTRF-VLKKALALGLKPIVVINKI 130 (603)
T ss_pred CCeEEEEecCCCcCCccc-------------hhhhhhhhcceEEEEEEcccCCC-Cchhh-hHHHHHHcCCCcEEEEeCC
Confidence 457899999999977531 13333444588888887655444 33322 3445556688899999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|.-...
T Consensus 131 Drp~Ar 136 (603)
T COG1217 131 DRPDAR 136 (603)
T ss_pred CCCCCC
Confidence 987544
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.02 E-value=6e-06 Score=77.35 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=22.0
Q ss_pred EECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec
Q 013508 43 VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (441)
Q Consensus 43 VvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (441)
|+|++||||||+..++... ++ .--|.+..+.|-..
T Consensus 1 ViGpaGSGKTT~~~~~~~~--~~----~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW--LE----SNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH--HT----TT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHH--HH----hccCCceEEEcchH
Confidence 7999999999999999864 21 12355666666443
No 327
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.01 E-value=1.4e-06 Score=75.16 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=44.6
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH-HHHHHHHhC--CCCCcEEEEeccC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-AMKLAREVD--PTGERTFGVLTKL 217 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~-~l~l~~~~~--~~~~r~i~VltK~ 217 (441)
.+.+|||.|.-.. ..+.+.|.+.+.+.+|+..- .|...-+ .+.+-+++. -...|+++|-||+
T Consensus 70 r~mlWdtagqeEf-------------DaItkAyyrgaqa~vLVFST--TDr~SFea~~~w~~kv~~e~~~IPtV~vqNKI 134 (246)
T KOG4252|consen 70 RSMLWDTAGQEEF-------------DAITKAYYRGAQASVLVFST--TDRYSFEATLEWYNKVQKETERIPTVFVQNKI 134 (246)
T ss_pred HHHHHHhccchhH-------------HHHHHHHhccccceEEEEec--ccHHHHHHHHHHHHHHHHHhccCCeEEeeccc
Confidence 4668999986432 47788999998888887643 2222222 222333332 2468999999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+++..
T Consensus 135 Dlveds 140 (246)
T KOG4252|consen 135 DLVEDS 140 (246)
T ss_pred hhhHhh
Confidence 999754
No 328
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=3.9e-05 Score=76.68 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+++||||||..... ....+.+.++....-. .+.-.+|++ +++.+ ..+..+.++.+... ...=+|+||.
T Consensus 299 ~~D~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVL-sAt~~--~~~~~~~~~~f~~~-~~~glIlTKL 369 (432)
T PRK12724 299 GSELILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVL-SSTSS--YHHTLTVLKAYESL-NYRRILLTKL 369 (432)
T ss_pred CCCEEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEE-eCCCC--HHHHHHHHHHhcCC-CCCEEEEEcc
Confidence 4589999999986421 1222222233222111 233345544 54433 33445556666443 3467889999
Q ss_pred CCCCCcCcHHHHHc
Q 013508 218 DLMDKGTNALDVLE 231 (441)
Q Consensus 218 D~~~~~~~~~~~l~ 231 (441)
|.......+..+..
T Consensus 370 DEt~~~G~il~i~~ 383 (432)
T PRK12724 370 DEADFLGSFLELAD 383 (432)
T ss_pred cCCCCccHHHHHHH
Confidence 99988776666643
No 329
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00012 Score=73.76 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=78.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCC---cccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFL---PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~l---P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
-..|++||..|+||||++..|.|...+ +...++.|.-...+. .-..-..|++.++.+.....+..++...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig---alEQL~~~a~ilGvp~~~v~~~~dl~~al~-- 265 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG---GHEQLRIYGKLLGVSVRSIKDIADLQLMLH-- 265 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh---HHHHHHHHHHHcCCceecCCCHHHHHHHHH--
Confidence 357999999999999999999885221 111122211110000 000001223333222222223323221111
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
.-...++.+|||+|..... ....+.+..+. . ...+.-.+|++ +++.. .+
T Consensus 266 ---------------------~l~~~d~VLIDTaGrsqrd-----~~~~~~l~~l~-~-~~~~~~~~LVl-~at~~--~~ 314 (420)
T PRK14721 266 ---------------------ELRGKHMVLIDTVGMSQRD-----QMLAEQIAMLS-Q-CGTQVKHLLLL-NATSS--GD 314 (420)
T ss_pred ---------------------HhcCCCEEEecCCCCCcch-----HHHHHHHHHHh-c-cCCCceEEEEE-cCCCC--HH
Confidence 1123588999999996531 11222222221 1 12244445555 44432 33
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~ 231 (441)
+..+.+..+... ...=+|+||.|.......+.+++.
T Consensus 315 ~~~~~~~~f~~~-~~~~~I~TKlDEt~~~G~~l~~~~ 350 (420)
T PRK14721 315 TLDEVISAYQGH-GIHGCIITKVDEAASLGIALDAVI 350 (420)
T ss_pred HHHHHHHHhcCC-CCCEEEEEeeeCCCCccHHHHHHH
Confidence 444556666553 345678999999988777766654
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.98 E-value=8.5e-05 Score=71.04 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=47.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH---Hhhc-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR---SYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~---~yi~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
..+++||||||.... .....+.++.+.. ..+. .++.++|++.+ .. .++.+..+..+...-...-+|+
T Consensus 154 ~~D~ViIDT~G~~~~-----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a-~~---~~~~~~~~~~f~~~~~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQN-----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDA-TT---GQNALEQAKVFNEAVGLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcc-----hHHHHHHHHHHHHHHhcccCCCCceEEEEEEC-CC---CHHHHHHHHHHHhhCCCCEEEE
Confidence 468999999998653 1222223333222 1222 26666666544 32 3344444444433224578899
Q ss_pred ccCCCCCCcCcHHHHHc
Q 013508 215 TKLDLMDKGTNALDVLE 231 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l~ 231 (441)
||+|.......+..+..
T Consensus 225 TKlDe~~~~G~~l~~~~ 241 (272)
T TIGR00064 225 TKLDGTAKGGIILSIAY 241 (272)
T ss_pred EccCCCCCccHHHHHHH
Confidence 99999887766665543
No 331
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.96 E-value=0.00012 Score=74.30 Aligned_cols=82 Identities=20% Similarity=0.275 Sum_probs=46.6
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
.+++||||||..... ......+..++.. ...+..++|++ +++.. ..+..++++.+...+. .-+|+||+|.
T Consensus 300 ~DlVlIDt~G~~~~d-----~~~~~~L~~ll~~-~~~~~~~~LVl-~a~~~--~~~l~~~~~~f~~~~~-~~vI~TKlDe 369 (424)
T PRK05703 300 CDVILIDTAGRSQRD-----KRLIEELKALIEF-SGEPIDVYLVL-SATTK--YEDLKDIYKHFSRLPL-DGLIFTKLDE 369 (424)
T ss_pred CCEEEEeCCCCCCCC-----HHHHHHHHHHHhc-cCCCCeEEEEE-ECCCC--HHHHHHHHHHhCCCCC-CEEEEecccc
Confidence 589999999986531 2222233344431 11344444444 44432 3344455666665443 4688999999
Q ss_pred CCCcCcHHHHHc
Q 013508 220 MDKGTNALDVLE 231 (441)
Q Consensus 220 ~~~~~~~~~~l~ 231 (441)
......+.+++.
T Consensus 370 t~~~G~i~~~~~ 381 (424)
T PRK05703 370 TSSLGSILSLLI 381 (424)
T ss_pred cccccHHHHHHH
Confidence 877665666554
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=6.9e-05 Score=70.19 Aligned_cols=129 Identities=19% Similarity=0.374 Sum_probs=81.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
.|..||..+.|||||.-||++. +.-.+ ...+.+++++.+..++
T Consensus 14 NigtiGHvdHGKTTLtaAit~~-la~~~------------------------------~~~~~~y~~id~aPeE------ 56 (394)
T COG0050 14 NVGTIGHVDHGKTTLTAAITTV-LAKKG------------------------------GAEAKAYDQIDNAPEE------ 56 (394)
T ss_pred EEEEeccccCchhhHHHHHHHH-HHhhc------------------------------cccccchhhhccCchH------
Confidence 5889999999999999999875 11111 1222334444433332
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-cHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAMK 198 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-~~~~l~ 198 (441)
+..+++-++-+++....+ .++..||.||.-+ .+++|+....+ -|..||+|.++..... +.+-+-
T Consensus 57 -k~rGITIntahveyet~~-rhyahVDcPGHaD------------YvKNMItgAaq-mDgAILVVsA~dGpmPqTrEHiL 121 (394)
T COG0050 57 -KARGITINTAHVEYETAN-RHYAHVDCPGHAD------------YVKNMITGAAQ-MDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred -hhcCceeccceeEEecCC-ceEEeccCCChHH------------HHHHHhhhHHh-cCccEEEEEcCCCCCCcchhhhh
Confidence 223455555666666644 5899999999743 24777777665 4556777766554433 333344
Q ss_pred HHHHhCCCCC-cEEEEeccCCCCCCc
Q 013508 199 LAREVDPTGE-RTFGVLTKLDLMDKG 223 (441)
Q Consensus 199 l~~~~~~~~~-r~i~VltK~D~~~~~ 223 (441)
+++++ |. ++++++||+|+++..
T Consensus 122 larqv---Gvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 122 LARQV---GVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhhc---CCcEEEEEEecccccCcH
Confidence 67766 44 577779999999854
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.96 E-value=3.7e-05 Score=74.21 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFL 64 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~l 64 (441)
..++++|.+|+|||||+|+|+|....
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 57999999999999999999998653
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.94 E-value=6.8e-05 Score=66.66 Aligned_cols=80 Identities=25% Similarity=0.405 Sum_probs=44.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..++.++||||..... ......+..+. . ...++.+++++.+ .. ..+.++.+..+...-.-.-+|+||+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l~-~-~~~~~~~~lVv~~-~~---~~~~~~~~~~~~~~~~~~~viltk~D 150 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKIK-R-VVKPDEVLLVVDA-MT---GQDAVNQAKAFNEALGITGVILTKLD 150 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHHH-h-hcCCCeEEEEEEC-CC---ChHHHHHHHHHHhhCCCCEEEEECCc
Confidence 4578999999986421 11222222221 1 2247777777654 32 23444445544322225778899999
Q ss_pred CCCCcCcHHHH
Q 013508 219 LMDKGTNALDV 229 (441)
Q Consensus 219 ~~~~~~~~~~~ 229 (441)
..........+
T Consensus 151 ~~~~~g~~~~~ 161 (173)
T cd03115 151 GDARGGAALSI 161 (173)
T ss_pred CCCCcchhhhh
Confidence 98877655443
No 335
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=97.94 E-value=5.4e-05 Score=63.06 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=77.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
--+|.+.|--||||+|+|.-|.+.+. .-.|+
T Consensus 17 EirilllGldnAGKTT~LKqL~sED~-----~hltp-------------------------------------------- 47 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSEDP-----RHLTP-------------------------------------------- 47 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccCCh-----hhccc--------------------------------------------
Confidence 34799999999999999999999875 22221
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc---H
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT---S 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~---~ 194 (441)
+.+|+.. .+...+...|+++|.-|-... +-.+..|..+.|.+|++++++...... +
T Consensus 48 ----T~GFn~k----~v~~~g~f~LnvwDiGGqr~I-------------RpyWsNYyenvd~lIyVIDS~D~krfeE~~~ 106 (185)
T KOG0074|consen 48 ----TNGFNTK----KVEYDGTFHLNVWDIGGQRGI-------------RPYWSNYYENVDGLIYVIDSTDEKRFEEISE 106 (185)
T ss_pred ----cCCcceE----EEeecCcEEEEEEecCCcccc-------------chhhhhhhhccceEEEEEeCCchHhHHHHHH
Confidence 2334432 233445578999999997542 578889999999999988754432212 2
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.-.+++.+..-...|+.+-.||-|++..
T Consensus 107 el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 107 ELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2223444444446778888899998744
No 336
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=1.4e-05 Score=68.99 Aligned_cols=112 Identities=17% Similarity=0.259 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH--HHHHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS--DAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~--~~l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.|||+-|--. .+++...|...++.||+++++.+.+ +..+ ..-.+...-.-.|.|.+..+|
T Consensus 68 ~~~l~fwdlgGQe~-------------lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lan 134 (197)
T KOG0076|consen 68 NAPLSFWDLGGQES-------------LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLAN 134 (197)
T ss_pred cceeEEEEcCChHH-------------HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcc
Confidence 45799999998632 3799999999999999998776632 2111 111233333446899999999
Q ss_pred cCCCCCCcC--cHHHHHc-Cccc-ccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 216 KLDLMDKGT--NALDVLE-GRSY-RLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 216 K~D~~~~~~--~~~~~l~-~~~~-~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
|-|+-+..+ ++..++. .+.. .-...+.+|......++++++.+.....
T Consensus 135 kqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 135 KQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 999865432 1112222 1111 1223455666666666667666665544
No 337
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=4.4e-05 Score=66.12 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|.++|..++||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
No 338
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=7.9e-05 Score=62.06 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=81.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-..|+.+|-..|||||++-.|.-.. .+|..||
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~-------~~~~ipT----------------------------------------- 48 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQ-------SVTTIPT----------------------------------------- 48 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCC-------Ccccccc-----------------------------------------
Confidence 4579999999999999998886432 2233332
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
.+|+-..+. .....+.++|+-|..+ ++.++++|......+|+++++|..+- -+++.
T Consensus 49 -----vGFnvetVt-----ykN~kfNvwdvGGqd~-------------iRplWrhYy~gtqglIFV~Dsa~~dr-~eeAr 104 (180)
T KOG0071|consen 49 -----VGFNVETVT-----YKNVKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVVDSADRDR-IEEAR 104 (180)
T ss_pred -----cceeEEEEE-----eeeeEEeeeeccCchh-------------hhHHHHhhccCCceEEEEEeccchhh-HHHHH
Confidence 223332222 2345678999999754 37899999999999999998877543 22222
Q ss_pred H-HHHHhCC---CCCcEEEEeccCCCCCCcC--cHHHHHcCcccccCCCeE
Q 013508 198 K-LAREVDP---TGERTFGVLTKLDLMDKGT--NALDVLEGRSYRLQHPWV 242 (441)
Q Consensus 198 ~-l~~~~~~---~~~r~i~VltK~D~~~~~~--~~~~~l~~~~~~l~~g~~ 242 (441)
. +-+-+.. ...+.++..||-|+.+... ++.+.++-+. .....|+
T Consensus 105 ~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~-~r~~~W~ 154 (180)
T KOG0071|consen 105 NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER-IRDRNWY 154 (180)
T ss_pred HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc-ccCCccE
Confidence 2 2222322 2355667789999875432 3456655333 2234565
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=97.91 E-value=0.00017 Score=73.04 Aligned_cols=81 Identities=22% Similarity=0.395 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||.... .+.....+..+ ...+ .|+.+++++. +.. .+++...++.+...-..+-+|+||+|
T Consensus 183 ~~DvVIIDTaGrl~~-----d~~lm~eL~~i-~~~v-~p~evllVld-a~~---gq~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 183 GYDVVIVDTAGRLHI-----DEELMDELKAI-KAAV-NPDEILLVVD-AMT---GQDAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred CCCEEEEeCCCCccc-----CHHHHHHHHHH-HHhh-CCCeEEEEEe-ccc---HHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 468999999998653 12222222222 2223 5666666664 432 46777777776643345678899999
Q ss_pred CCCCcCcHHHHH
Q 013508 219 LMDKGTNALDVL 230 (441)
Q Consensus 219 ~~~~~~~~~~~l 230 (441)
....+..+..+.
T Consensus 252 ~~~rgG~alsi~ 263 (433)
T PRK10867 252 GDARGGAALSIR 263 (433)
T ss_pred CcccccHHHHHH
Confidence 876665555543
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=4.8e-05 Score=76.67 Aligned_cols=112 Identities=27% Similarity=0.498 Sum_probs=68.6
Q ss_pred CCCeEE-EECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVA-VVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~Iv-VvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..|.|+ |||+|++|||||+.+|+.+ + .-. +.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr-~-----tk~------------------------------------------ti 98 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRR-F-----TKQ------------------------------------------TI 98 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHH-H-----HHh------------------------------------------hh
Confidence 456666 9999999999999999876 3 000 11
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+.+.| +|. +.+.....+||+..|. +. ..|+. ..+=+| ++|+..++|-++.. +
T Consensus 99 ~~i~G--------PiT--vvsgK~RRiTflEcp~--Dl-------------~~miD-vaKIaD-LVlLlIdgnfGfEM-E 150 (1077)
T COG5192 99 DEIRG--------PIT--VVSGKTRRITFLECPS--DL-------------HQMID-VAKIAD-LVLLLIDGNFGFEM-E 150 (1077)
T ss_pred hccCC--------ceE--EeecceeEEEEEeChH--HH-------------HHHHh-HHHhhh-eeEEEeccccCcee-h
Confidence 22223 333 3333456899999882 21 12221 111245 45555677877743 4
Q ss_pred HHHHHHHhCCCC-CcEEEEeccCCCCCCcC
Q 013508 196 AMKLAREVDPTG-ERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 196 ~l~l~~~~~~~~-~r~i~VltK~D~~~~~~ 224 (441)
.++++.-+.+.| .|+++|+|+.|+....+
T Consensus 151 TmEFLnil~~HGmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 151 TMEFLNILISHGMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred HHHHHHHHhhcCCCceEEEEeecccccChH
Confidence 455555556665 67999999999987654
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.89 E-value=0.00013 Score=73.99 Aligned_cols=79 Identities=24% Similarity=0.385 Sum_probs=48.5
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
+++||||||.... .....+.+..+ .. +..++.+++++. +.. .+++...++.+.+.-..+-+|+||+|..
T Consensus 177 DvVIIDTAGr~~~-----d~~lm~El~~l-~~-~~~pdevlLVvd-a~~---gq~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 177 DVIIVDTAGRHAL-----EEDLIEEMKEI-KE-AVKPDEVLLVID-ATI---GQQAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred CEEEEECCCcccc-----hHHHHHHHHHH-HH-HhcccceeEEEe-ccc---cHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 8999999998653 12222222222 12 335676666665 443 3566677777654334567789999988
Q ss_pred CCcCcHHHHH
Q 013508 221 DKGTNALDVL 230 (441)
Q Consensus 221 ~~~~~~~~~l 230 (441)
..+..+..+.
T Consensus 246 a~~G~~ls~~ 255 (437)
T PRK00771 246 AKGGGALSAV 255 (437)
T ss_pred CcccHHHHHH
Confidence 7776665554
No 342
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.87 E-value=0.00012 Score=81.21 Aligned_cols=68 Identities=16% Similarity=0.234 Sum_probs=44.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.+.++||||||.... ..+...+...+|+++++++ ++.++.. .....+..+...+.|+|+|+||+|
T Consensus 525 ~p~i~fiDTPGhe~F-------------~~lr~~g~~~aDivlLVVD-a~~Gi~~-qT~e~I~~lk~~~iPiIVViNKiD 589 (1049)
T PRK14845 525 IPGLLFIDTPGHEAF-------------TSLRKRGGSLADLAVLVVD-INEGFKP-QTIEAINILRQYKTPFVVAANKID 589 (1049)
T ss_pred cCcEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEE-CcccCCH-hHHHHHHHHHHcCCCEEEEEECCC
Confidence 467999999996332 2444456677888777774 4444322 233333344445789999999999
Q ss_pred CCC
Q 013508 219 LMD 221 (441)
Q Consensus 219 ~~~ 221 (441)
+..
T Consensus 590 L~~ 592 (1049)
T PRK14845 590 LIP 592 (1049)
T ss_pred Ccc
Confidence 974
No 343
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=6e-05 Score=77.41 Aligned_cols=133 Identities=17% Similarity=0.290 Sum_probs=79.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
...++++|.-.+|||+|+..|++... |..... .+..++.+... +. +
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tH-p~~~~~-----~e~~lrytD~l---~~----------------------E--- 173 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTH-PDFSKN-----TEADLRYTDTL---FY----------------------E--- 173 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceecc-cccccc-----ccccccccccc---hh----------------------h---
Confidence 44688999999999999999999864 444322 11111111000 00 0
Q ss_pred hcCCCCCcCCcceEEEEecCC--CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~--~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
..++.++...++.+-+.... -.-++++||||..... .+ +...++-+|.++++|+.+..=.-+
T Consensus 174 -~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~------------DE-~ta~l~~sDgvVlvvDv~EGVmln-- 237 (971)
T KOG0468|consen 174 -QERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS------------DE-TTASLRLSDGVVLVVDVAEGVMLN-- 237 (971)
T ss_pred -HhcCceEeecceEEEEecCcCceeeeeeecCCCcccch------------HH-HHHHhhhcceEEEEEEcccCceee--
Confidence 11223344445554444332 2457899999997752 12 334455678888887665432112
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
.-++++..-....++++|+||+|++
T Consensus 238 tEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 238 TERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred HHHHHHHHHhccCcEEEEEehhHHH
Confidence 2235666666789999999999975
No 344
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=4.7e-05 Score=78.04 Aligned_cols=81 Identities=27% Similarity=0.297 Sum_probs=43.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||..... ....+.+.. +.... ... .+|+ .+++.. ..+....++.+... ...-+|+||+|
T Consensus 428 ~~DLVLIDTaG~s~~D-----~~l~eeL~~-L~aa~-~~a-~lLV-LpAtss--~~Dl~eii~~f~~~-~~~gvILTKlD 495 (559)
T PRK12727 428 DYKLVLIDTAGMGQRD-----RALAAQLNW-LRAAR-QVT-SLLV-LPANAH--FSDLDEVVRRFAHA-KPQGVVLTKLD 495 (559)
T ss_pred cCCEEEecCCCcchhh-----HHHHHHHHH-HHHhh-cCC-cEEE-EECCCC--hhHHHHHHHHHHhh-CCeEEEEecCc
Confidence 3589999999996421 112222221 22222 222 2333 344432 23334455555432 45779999999
Q ss_pred CCCCcCcHHHHHc
Q 013508 219 LMDKGTNALDVLE 231 (441)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (441)
.......+.+++.
T Consensus 496 Et~~lG~aLsv~~ 508 (559)
T PRK12727 496 ETGRFGSALSVVV 508 (559)
T ss_pred CccchhHHHHHHH
Confidence 9877666666654
No 345
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=4.3e-06 Score=70.83 Aligned_cols=102 Identities=12% Similarity=0.176 Sum_probs=58.7
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-c-cccHHHHHHHHHh-CCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-D-IATSDAMKLAREV-DPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~-~~~~~~l~l~~~~-~~~~~r~i~VltK 216 (441)
.+|.+|||.|.-+ .++++..|.+.+=..+|+.+-.+. . +....++.-++.- --...-+|++-||
T Consensus 67 ihLQlWDTAGQER-------------FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK 133 (219)
T KOG0081|consen 67 IHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNK 133 (219)
T ss_pred EEEeeeccccHHH-------------HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCc
Confidence 4789999999643 378888888887777777644331 1 1112222222211 1124457888999
Q ss_pred CCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhcc
Q 013508 217 LDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINR 254 (441)
Q Consensus 217 ~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~ 254 (441)
+|+.+....-.+-......+.+++|+....-.+..+.+
T Consensus 134 ~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~k 171 (219)
T KOG0081|consen 134 ADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEK 171 (219)
T ss_pred cchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHH
Confidence 99987553222222222345567888877655544443
No 346
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.80 E-value=5.2e-05 Score=72.18 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+++|..|+|||||+|+|.+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~ 187 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPE 187 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCch
Confidence 6889999999999999999984
No 347
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=9.1e-05 Score=61.49 Aligned_cols=123 Identities=16% Similarity=0.279 Sum_probs=79.1
Q ss_pred ccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 35 WEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 35 ~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
+..+..-+++|+-++|||-||..++..+| ...||..+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-------madcphtig----------------------------------- 45 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-------MADCPHTIG----------------------------------- 45 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-------hhcCCcccc-----------------------------------
Confidence 45567789999999999999999998877 334553211
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--c
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--A 192 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~ 192 (441)
..|-. -.+++.+. ...|.++||.|..+ .+...++|.+.+...+++.+-..... .
T Consensus 46 --------vefgt--riievsgq-kiklqiwdtagqer-------------fravtrsyyrgaagalmvyditrrstynh 101 (215)
T KOG0097|consen 46 --------VEFGT--RIIEVSGQ-KIKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNH 101 (215)
T ss_pred --------eecce--eEEEecCc-EEEEEEeecccHHH-------------HHHHHHHHhccccceeEEEEehhhhhhhh
Confidence 11111 22335554 35789999999633 47889999998776666543322211 1
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+.++.-++.+..-..-++++-||.|+-+..
T Consensus 102 lsswl~dar~ltnpnt~i~lignkadle~qr 132 (215)
T KOG0097|consen 102 LSSWLTDARNLTNPNTVIFLIGNKADLESQR 132 (215)
T ss_pred HHHHHhhhhccCCCceEEEEecchhhhhhcc
Confidence 2445555555544445567778999987654
No 348
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00033 Score=70.06 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||..... ......+..++.. ...+.-++| |.+++.+ ..+..+.+..+... ...=+|+||.|
T Consensus 254 ~~DlVLIDTaGr~~~~-----~~~l~el~~~l~~-~~~~~e~~L-Vlsat~~--~~~~~~~~~~~~~~-~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKD-----FMKLAEMKELLNA-CGRDAEFHL-AVSSTTK--TSDVKEIFHQFSPF-SYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccC-----HHHHHHHHHHHHh-cCCCCeEEE-EEcCCCC--HHHHHHHHHHhcCC-CCCEEEEEecc
Confidence 3589999999986421 1111122222222 222223444 4455543 33333455655443 24668899999
Q ss_pred CCCCcCcHHHHHc
Q 013508 219 LMDKGTNALDVLE 231 (441)
Q Consensus 219 ~~~~~~~~~~~l~ 231 (441)
.......+..++.
T Consensus 324 et~~~G~~l~~~~ 336 (388)
T PRK12723 324 ETTCVGNLISLIY 336 (388)
T ss_pred CCCcchHHHHHHH
Confidence 9988877766654
No 349
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00013 Score=71.86 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=80.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecC-CCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE-DGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.-...+||-.|-||||||-|.|+=.----+..|.+.-+- +. ....+| ++-+.
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk-------~~~~a~SDW--------------------M~iEk 63 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRK-------SGKHAKSDW--------------------MEIEK 63 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeecc-------CCcccccHH--------------------HHHHH
Confidence 455799999999999999999982211011112221111 10 011222 22222
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
. .++|-..-.+.. .....-+.|+||||.-+.+ ++ +.+-+...|+.++++++|. ++ ...
T Consensus 64 q------RGISVtsSVMqF-~Y~~~~iNLLDTPGHeDFS-----ED--------TYRtLtAvDsAvMVIDaAK-Gi-E~q 121 (528)
T COG4108 64 Q------RGISVTSSVMQF-DYADCLVNLLDTPGHEDFS-----ED--------TYRTLTAVDSAVMVIDAAK-GI-EPQ 121 (528)
T ss_pred h------cCceEEeeEEEe-ccCCeEEeccCCCCccccc-----hh--------HHHHHHhhheeeEEEeccc-Cc-cHH
Confidence 1 223322222222 2345678999999987653 22 3334445788888776654 55 445
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++|.+-..-.+.|++-.+||+|.-..
T Consensus 122 T~KLfeVcrlR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 122 TLKLFEVCRLRDIPIFTFINKLDREGR 148 (528)
T ss_pred HHHHHHHHhhcCCceEEEeeccccccC
Confidence 666777777778999999999998644
No 350
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.75 E-value=0.00028 Score=71.54 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=49.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||.... .......+..+. . .-.++.++|++.+ .. .+++...++.+...-..+=+|+||+|
T Consensus 182 ~~DvVIIDTaGr~~~-----d~~l~~eL~~i~-~-~~~p~e~lLVvda-~t---gq~~~~~a~~f~~~v~i~giIlTKlD 250 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI-----DEELMEELAAIK-E-ILNPDEILLVVDA-MT---GQDAVNTAKTFNERLGLTGVVLTKLD 250 (428)
T ss_pred CCCEEEEeCCCcccc-----CHHHHHHHHHHH-H-hhCCceEEEEEec-cc---hHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 458999999998653 122232232222 2 3357777776654 32 46777777777643345677899999
Q ss_pred CCCCcCcHHHHH
Q 013508 219 LMDKGTNALDVL 230 (441)
Q Consensus 219 ~~~~~~~~~~~l 230 (441)
....+..+..+.
T Consensus 251 ~~~~~G~~lsi~ 262 (428)
T TIGR00959 251 GDARGGAALSVR 262 (428)
T ss_pred CcccccHHHHHH
Confidence 776665555543
No 351
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00014 Score=62.39 Aligned_cols=118 Identities=15% Similarity=0.261 Sum_probs=77.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.+...+++.|--|||||||++.|=..+. +.-.+|-.|+.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl---~qhvPTlHPTS-------------------------------------- 56 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL---GQHVPTLHPTS-------------------------------------- 56 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccc---cccCCCcCCCh--------------------------------------
Confidence 4677899999999999999999865543 22345555531
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-H
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-S 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~ 194 (441)
+.+ .| .....+-+|+-|... .+...++|+...++|++.|+.+....-. +
T Consensus 57 E~l--------------~I---g~m~ftt~DLGGH~q-------------Arr~wkdyf~~v~~iv~lvda~d~er~~es 106 (193)
T KOG0077|consen 57 EEL--------------SI---GGMTFTTFDLGGHLQ-------------ARRVWKDYFPQVDAIVYLVDAYDQERFAES 106 (193)
T ss_pred HHh--------------ee---cCceEEEEccccHHH-------------HHHHHHHHHhhhceeEeeeehhhHHHhHHH
Confidence 000 01 234678899999744 2678999999999999999776543211 1
Q ss_pred -HHHHH-HHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 195 -DAMKL-AREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 195 -~~l~l-~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
..++. +....-...|.++..||+|.-....
T Consensus 107 ~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 107 KKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred HHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 11111 1111113678999999999875543
No 352
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.67 E-value=0.00023 Score=81.37 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 6 SLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 6 ~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
.+..+-.++++....+....... ....-.+|-.+|+|+++|||||+|+.- |.+| |-.
T Consensus 82 ~~~~l~~~~~~a~~~Lk~~~~~~---~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~-pl~ 138 (1169)
T TIGR03348 82 EIRELRARFNEALALLKRSRLGG---RRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKF-PLA 138 (1169)
T ss_pred HHHHHHHHHHHHHHHHhhccccC---chhhhcCCCEEEECCCCCchhHHHHhC-CCCC-cCc
Confidence 34446667777777775433211 122358999999999999999999997 8774 544
No 353
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.0009 Score=61.16 Aligned_cols=86 Identities=24% Similarity=0.400 Sum_probs=53.7
Q ss_pred CCcEEEeC-CCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH-HHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDL-PGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-AMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDt-PGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~-~l~l~~~~~~~~~r~i~VltK~ 217 (441)
.++++||| .|+ +.+-|.-++..|.+|++|+|+...+.+.+ ..+++.++. -+|+.+|+||+
T Consensus 134 ~e~VivDtEAGi----------------EHfgRg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv 195 (255)
T COG3640 134 YEVVIVDTEAGI----------------EHFGRGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKV 195 (255)
T ss_pred CcEEEEecccch----------------hhhccccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC--CceEEEEEeec
Confidence 36778887 555 34445556678888888888765554433 233554443 28999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCCh
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ 249 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~ 249 (441)
|.. . ..+......+++.+.++++.+.
T Consensus 196 ~e~--e----~~~~~~~~~~~~~vlg~iP~d~ 221 (255)
T COG3640 196 DEE--E----ELLRELAEELGLEVLGVIPYDP 221 (255)
T ss_pred cch--h----HHHHhhhhccCCeEEEEccCCH
Confidence 965 1 1222233455566677887764
No 354
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.66 E-value=0.00087 Score=66.34 Aligned_cols=155 Identities=16% Similarity=0.213 Sum_probs=89.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcc---cccccccccEEEEEEecC-CCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPR---GSGIVTRRPLVLQLHKTE-DGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~---~~~~~Tr~p~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
-..|++||+.|+||||-|--|..+-.+-- ..++.|--- +|=.+ ..-..|++.+..+-....+..+...++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt----YRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT----YRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc----chhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 45688999999999999999887632000 011211100 00000 00134677777776666777776666543
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC-CCeEEEEeccCccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK-PNSVILAISPANQDIA 192 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~-~~~iil~v~~a~~~~~ 192 (441)
-. ..+++||||-|.... +...+ +-...|+.. .+.-+++|.+++.-
T Consensus 279 l~-----------------------~~d~ILVDTaGrs~~--------D~~~i-~el~~~~~~~~~i~~~Lvlsat~K-- 324 (407)
T COG1419 279 LR-----------------------DCDVILVDTAGRSQY--------DKEKI-EELKELIDVSHSIEVYLVLSATTK-- 324 (407)
T ss_pred hh-----------------------cCCEEEEeCCCCCcc--------CHHHH-HHHHHHHhccccceEEEEEecCcc--
Confidence 22 248999999998653 22222 334455554 24455666666642
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLE 231 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~ 231 (441)
..+.......+...+.. =+++||+|....-.+...++.
T Consensus 325 ~~dlkei~~~f~~~~i~-~~I~TKlDET~s~G~~~s~~~ 362 (407)
T COG1419 325 YEDLKEIIKQFSLFPID-GLIFTKLDETTSLGNLFSLMY 362 (407)
T ss_pred hHHHHHHHHHhccCCcc-eeEEEcccccCchhHHHHHHH
Confidence 34444566666655443 357999998876556666654
No 355
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=9.2e-05 Score=61.96 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=51.8
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---ccHHHHHHHHHhCCCCCcEEEEe
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---~~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
......++|+-|-.+. +-.++.|..+.+.+|++|++++.|- +..+...++++-.-.+...+++.
T Consensus 60 KNLk~~vwdLggqtSi-------------rPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~a 126 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSI-------------RPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFA 126 (182)
T ss_pred ccccceeeEccCcccc-------------cHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEe
Confidence 4557899999998663 5789999999999999999887643 22233334444333456788889
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||.|....
T Consensus 127 nKqD~~~~ 134 (182)
T KOG0072|consen 127 NKQDYSGA 134 (182)
T ss_pred ccccchhh
Confidence 99997643
No 356
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00011 Score=73.09 Aligned_cols=133 Identities=19% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
......+|-.--.|||||-..|+... +..+.+ +.++..-+.++
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t------~~~~~R-------------------------------em~~Q~LDsMd 50 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELT------GGLSER-------------------------------EMRAQVLDSMD 50 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHh------cCcChH-------------------------------HHHHHhhhhhh
Confidence 34456778888999999999998653 222221 11122212222
Q ss_pred hhcCCCCCcCCcceEEEEecC--CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
-...++-.+....+++..... ....+.||||||..+.+. + |.+.+..+...+|+|+ |.++...|
T Consensus 51 iERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY------------E-VSRSLAACEGalLvVD-AsQGveAQ 116 (603)
T COG0481 51 IERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSY------------E-VSRSLAACEGALLVVD-ASQGVEAQ 116 (603)
T ss_pred hHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEE------------E-ehhhHhhCCCcEEEEE-CccchHHH
Confidence 111222334445556555543 346789999999988753 1 2223334555677664 55666444
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.....=..+ ..+--.|-|+||+|+-.
T Consensus 117 TlAN~YlAl-e~~LeIiPViNKIDLP~ 142 (603)
T COG0481 117 TLANVYLAL-ENNLEIIPVLNKIDLPA 142 (603)
T ss_pred HHHHHHHHH-HcCcEEEEeeecccCCC
Confidence 432211112 34567999999999964
No 357
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.63 E-value=0.00046 Score=62.90 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.++||||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999975
No 358
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.58 E-value=0.00019 Score=65.78 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.|+++|..|||||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999865
No 359
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00022 Score=72.70 Aligned_cols=75 Identities=19% Similarity=0.346 Sum_probs=46.2
Q ss_pred ecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--------cHHHHHHHHHhCCC
Q 013508 135 YSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--------TSDAMKLAREVDPT 206 (441)
Q Consensus 135 ~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--------~~~~l~l~~~~~~~ 206 (441)
+.+....++|+|.||..... .+|+.. +..+|..||||+.....|. +.+...+++.+.
T Consensus 250 fes~~~~~tliDaPGhkdFi------------~nmi~g-~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-- 314 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFI------------PNMISG-ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-- 314 (603)
T ss_pred EecCceeEEEecCCCccccc------------hhhhcc-ccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--
Confidence 33566799999999954331 244433 2347788888765433221 233344566554
Q ss_pred CCcEEEEeccCCCCCCcC
Q 013508 207 GERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 207 ~~r~i~VltK~D~~~~~~ 224 (441)
-...|+++||+|+++=..
T Consensus 315 i~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 315 ISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred cceEEEEeecccccCccH
Confidence 356888899999996443
No 360
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00041 Score=72.32 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..|.++|+|.--+|||-||..|-|.++---..|-.|... +..|.+...++........
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqI----------------------gAt~fp~~ni~e~tk~~~~ 531 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQI----------------------GATYFPAENIREKTKELKK 531 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeec----------------------cccccchHHHHHHHHHHHh
Confidence 579999999999999999999999876333333333211 1112222223222221111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
.+ -.....|.+.+|||||.-+. .++-.+.-..+|.+||+|+-. .++ .+-
T Consensus 532 --~~-------------K~~~kvPg~lvIdtpghEsF-------------tnlRsrgsslC~~aIlvvdIm-hGlepqti 582 (1064)
T KOG1144|consen 532 --DA-------------KKRLKVPGLLVIDTPGHESF-------------TNLRSRGSSLCDLAILVVDIM-HGLEPQTI 582 (1064)
T ss_pred --hh-------------hhhcCCCeeEEecCCCchhh-------------hhhhhccccccceEEEEeehh-ccCCcchh
Confidence 11 01124678999999996543 244444455688888877432 333 344
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
+.+.+++ ....|.|+.|||+|.+
T Consensus 583 ESi~lLR---~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 583 ESINLLR---MRKTPFIVALNKIDRL 605 (1064)
T ss_pred HHHHHHH---hcCCCeEEeehhhhhh
Confidence 4555555 3468999999999987
No 361
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.53 E-value=0.00011 Score=69.56 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.-+.+.|||-||+|||||+|++--..
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~ 167 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVH 167 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHH
Confidence 45789999999999999999987543
No 362
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00071 Score=65.15 Aligned_cols=145 Identities=18% Similarity=0.257 Sum_probs=83.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCC------CccccChHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLP------KRRFTDFSMVRKE 110 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~ 110 (441)
.+.+.+-||.---|||||+-.|+--.- .+ -.+....++.. .-.-.||+-+-+-
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk-----~i----------------~eDQla~l~~dS~~~~t~g~~~D~ALLvDG 63 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTK-----AI----------------YEDQLASLERDSKRKGTQGEKIDLALLVDG 63 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcch-----hh----------------hHHHHHHHhcccccccCCCCccchhhhhhh
Confidence 567899999999999999998885321 00 01111112111 1133467777666
Q ss_pred HHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc
Q 013508 111 IQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD 190 (441)
Q Consensus 111 i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~ 190 (441)
++.++++ | ++-++-. ..+.......++.||||.... .++|+...-. ++..|++|+ |..+
T Consensus 64 L~AEREQ--G----ITIDVAY-RyFsT~KRkFIiADTPGHeQY------------TRNMaTGAST-adlAIlLVD-AR~G 122 (431)
T COG2895 64 LEAEREQ--G----ITIDVAY-RYFSTEKRKFIIADTPGHEQY------------TRNMATGAST-ADLAILLVD-ARKG 122 (431)
T ss_pred hHHHHhc--C----ceEEEEe-eecccccceEEEecCCcHHHH------------hhhhhccccc-ccEEEEEEe-cchh
Confidence 6655543 3 3333222 244455678999999997432 2566644333 666777765 4444
Q ss_pred cccHH-HH-HHHHHhCCCCCc-EEEEeccCCCCCCcCcH
Q 013508 191 IATSD-AM-KLAREVDPTGER-TFGVLTKLDLMDKGTNA 226 (441)
Q Consensus 191 ~~~~~-~l-~l~~~~~~~~~r-~i~VltK~D~~~~~~~~ 226 (441)
+..|. -. .++.. .|.| +++.+||+|+++-.++.
T Consensus 123 vl~QTrRHs~I~sL---LGIrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 123 VLEQTRRHSFIASL---LGIRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred hHHHhHHHHHHHHH---hCCcEEEEEEeeecccccCHHH
Confidence 42222 11 13332 3555 55669999999877643
No 363
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00044 Score=68.58 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCC-cEEEEeccCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGE-RTFGVLTKLD 218 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~-r~i~VltK~D 218 (441)
..++|||.||.-+ .+.+|+.. +.-.|+.+|+| +++.++..+ ..+.+.-++-.|. +-++|+||+|
T Consensus 50 ~~~~fIDvpgh~~------------~i~~miag-~~~~d~alLvV-~~deGl~~q-tgEhL~iLdllgi~~giivltk~D 114 (447)
T COG3276 50 GVMGFIDVPGHPD------------FISNLLAG-LGGIDYALLVV-AADEGLMAQ-TGEHLLILDLLGIKNGIIVLTKAD 114 (447)
T ss_pred CceEEeeCCCcHH------------HHHHHHhh-hcCCceEEEEE-eCccCcchh-hHHHHHHHHhcCCCceEEEEeccc
Confidence 3789999999832 23455433 23355666655 555444332 2223333444454 4599999999
Q ss_pred CCCCcC--cH-HHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 219 LMDKGT--NA-LDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 219 ~~~~~~--~~-~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
..++.. .. .+++.... .-....+.+...+.++++++...+....
T Consensus 115 ~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 115 RVDEARIEQKIKQILADLS-LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccHHHHHHHHHHHHhhcc-cccccccccccccCCCHHHHHHHHHHhh
Confidence 997642 11 12322212 1112334455555556655555444443
No 364
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.47 E-value=0.00024 Score=60.31 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=71.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-.+||+.|.--+|||||+-..+.-+|-.. . +..++.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~k----------------------H--------------lsTlQA-------- 48 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCK----------------------H--------------LSTLQA-------- 48 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchh----------------------h--------------HHHHHH--------
Confidence 35799999999999999999988777100 0 000110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH--
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~-- 195 (441)
.|-...+. +.+ ...+|.||||.|.-+. ..+---|.+.+|..+|+.+-...|- -+.
T Consensus 49 ------SF~~kk~n--~ed-~ra~L~IWDTAGQErf-------------HALGPIYYRgSnGalLVyDITDrdS-FqKVK 105 (218)
T KOG0088|consen 49 ------SFQNKKVN--VED-CRADLHIWDTAGQERF-------------HALGPIYYRGSNGALLVYDITDRDS-FQKVK 105 (218)
T ss_pred ------HHhhcccc--ccc-ceeeeeeeeccchHhh-------------hccCceEEeCCCceEEEEeccchHH-HHHHH
Confidence 01111111 222 3468999999997553 2344457888898888765433221 122
Q ss_pred -HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 -AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 -~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
|..-++.......-.++|-||+|+-...
T Consensus 106 nWV~Elr~mlGnei~l~IVGNKiDLEeeR 134 (218)
T KOG0088|consen 106 NWVLELRTMLGNEIELLIVGNKIDLEEER 134 (218)
T ss_pred HHHHHHHHHhCCeeEEEEecCcccHHHhh
Confidence 2233444444556788999999986543
No 365
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.43 E-value=0.0049 Score=61.35 Aligned_cols=79 Identities=23% Similarity=0.267 Sum_probs=54.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~-~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..++.||||.|-... ..+.+.++.. +-.-+|+-++||+++.. -|++...|+.++..-.=+=+|+||+
T Consensus 182 ~~DvvIvDTAGRl~i--------de~Lm~El~~Ik~~~~P~E~llVvDam~----GQdA~~~A~aF~e~l~itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI--------DEELMDELKEIKEVINPDETLLVVDAMI----GQDAVNTAKAFNEALGITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc--------cHHHHHHHHHHHhhcCCCeEEEEEeccc----chHHHHHHHHHhhhcCCceEEEEcc
Confidence 468999999998764 2233334322 22446887888876544 6888889998887666677899999
Q ss_pred CCCCCcCcHHHH
Q 013508 218 DLMDKGTNALDV 229 (441)
Q Consensus 218 D~~~~~~~~~~~ 229 (441)
|--.++.-+..+
T Consensus 250 DGdaRGGaALS~ 261 (451)
T COG0541 250 DGDARGGAALSA 261 (451)
T ss_pred cCCCcchHHHhh
Confidence 987777654433
No 366
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.40 E-value=0.00035 Score=71.61 Aligned_cols=81 Identities=25% Similarity=0.288 Sum_probs=44.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
.++++|||+|..... ....+.+ .++.... .+.-.+|++ ++..+ .....+.++.+...+ .+-+|+||+|.
T Consensus 335 ~d~VLIDTaGr~~~d-----~~~~e~~-~~l~~~~-~p~e~~LVL-dAt~~--~~~l~~i~~~f~~~~-~~g~IlTKlDe 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRD-----RMVSEQI-AMLHGAG-APVKRLLLL-NATSH--GDTLNEVVQAYRGPG-LAGCILTKLDE 403 (484)
T ss_pred CCeEEeCCCCcChhh-----HHHHHHH-HHHhccC-CCCeeEEEE-eCCCc--HHHHHHHHHHhccCC-CCEEEEeCCCC
Confidence 478999999986421 1111111 1222221 133344444 44432 233444566665543 56778999999
Q ss_pred CCCcCcHHHHHc
Q 013508 220 MDKGTNALDVLE 231 (441)
Q Consensus 220 ~~~~~~~~~~l~ 231 (441)
......+.+++.
T Consensus 404 t~~~G~~l~i~~ 415 (484)
T PRK06995 404 AASLGGALDVVI 415 (484)
T ss_pred cccchHHHHHHH
Confidence 887777766654
No 367
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00039 Score=72.75 Aligned_cols=131 Identities=21% Similarity=0.268 Sum_probs=78.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
.....|.++..--.|||||..+|+-.+- -+.+|-+-.+++-. +.+- +.+
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asng-----vis~rlagkirfld---------------------~red-----eq~ 55 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNG-----VISSRLAGKIRFLD---------------------TRED-----EQT 55 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhcc-----Eechhhccceeecc---------------------ccch-----hhh
Confidence 3566799999999999999999986652 23333333333221 1110 112
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
..++=+..++|. +. ...-+.|||+||..+.. ..+.+...-.|..+++| ++..+. .+.
T Consensus 56 rgitmkss~is~------~~--~~~~~nlidspghvdf~-------------sevssas~l~d~alvlv-dvvegv-~~q 112 (887)
T KOG0467|consen 56 RGITMKSSAISL------LH--KDYLINLIDSPGHVDFS-------------SEVSSASRLSDGALVLV-DVVEGV-CSQ 112 (887)
T ss_pred hceeeecccccc------cc--CceEEEEecCCCccchh-------------hhhhhhhhhcCCcEEEE-eecccc-chh
Confidence 222222233331 11 33468999999998863 33444444456555544 455566 445
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
...++|+.-..+.+.++|+||+|.+
T Consensus 113 t~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 113 TYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred HHHHHHHHHHccCceEEEEehhhhH
Confidence 5557887766789999999999943
No 368
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0002 Score=69.10 Aligned_cols=145 Identities=28% Similarity=0.381 Sum_probs=80.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccc----cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGI----VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~----~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
+++|+|.-.+|||||+--|+.-. |-.|.|- .-|.|.+++-.++..-+.+..- |.+...+.++.+..+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlG--------Fd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLG--------FDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhccc--------ccccccccchhhccc
Confidence 59999999999999998888654 4444442 2355655554443322111111 111122222221111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc-CCCeEEEEeccCcc--ccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE-KPNSVILAISPANQ--DIA 192 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~-~~~~iil~v~~a~~--~~~ 192 (441)
.. +|......-++|||+.|-.+.-. ..+...-. .|++.+|+|. |+. .++
T Consensus 240 aE---------------Ei~e~SSKlvTfiDLAGh~kY~~------------TTi~gLtgY~Ph~A~LvVs-A~~Gi~~t 291 (591)
T KOG1143|consen 240 AE---------------EIVEKSSKLVTFIDLAGHAKYQK------------TTIHGLTGYTPHFACLVVS-ADRGITWT 291 (591)
T ss_pred HH---------------HHHhhhcceEEEeecccchhhhe------------eeeeecccCCCceEEEEEE-cCCCCccc
Confidence 00 01111223579999999865311 11111111 2677777664 444 345
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
+.+-+-++..+ ..|.++++||+|+.++.+
T Consensus 292 TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 292 TREHLGLIAAL---NIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred cHHHHHHHHHh---CCCeEEEEEeeccccchh
Confidence 66666666655 589999999999998753
No 369
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.0019 Score=61.92 Aligned_cols=67 Identities=18% Similarity=0.410 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCC--eEEEEeccCccccccHHH--HHHHHHhCCCCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPN--SVILAISPANQDIATSDA--MKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~--~iil~v~~a~~~~~~~~~--l~l~~~~~~~~~r~i~Vlt 215 (441)
.++++||.||.. .+++..|..+. .+.++|+++..+..++.+ +-+...+ ....++|+|
T Consensus 70 lq~tlvDCPGHa----------------sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---c~klvvvin 130 (522)
T KOG0461|consen 70 LQFTLVDCPGHA----------------SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---CKKLVVVIN 130 (522)
T ss_pred ceeEEEeCCCcH----------------HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---ccceEEEEe
Confidence 477999999973 45555555432 233444555555555444 3233322 456899999
Q ss_pred cCCCCCCcCc
Q 013508 216 KLDLMDKGTN 225 (441)
Q Consensus 216 K~D~~~~~~~ 225 (441)
|+|....+..
T Consensus 131 kid~lpE~qr 140 (522)
T KOG0461|consen 131 KIDVLPENQR 140 (522)
T ss_pred ccccccchhh
Confidence 9999977543
No 370
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.25 E-value=0.00091 Score=61.56 Aligned_cols=50 Identities=26% Similarity=0.467 Sum_probs=34.4
Q ss_pred HHHHHhhcCCCeEEEEeccCcc-cccc-HHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 168 SMVRSYVEKPNSVILAISPANQ-DIAT-SDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 168 ~~v~~yi~~~~~iil~v~~a~~-~~~~-~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.+++..+.+|. +||+-.|..+ |..+ ...+.+++++......|++++|+=.
T Consensus 152 AIARAL~~~P~-iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 152 AIARALINNPK-IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHhcCCC-eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 56777777777 7777666432 4434 3456788888766677999999843
No 371
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.22 E-value=0.00017 Score=68.82 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
....|.|+|.+||||||||+.+++.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999886
No 372
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.20 E-value=0.0015 Score=58.35 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
.++..||-+.|+..+ ..+. .........+ .-+.+|.+|++.+-. ..+.. ..+..++... -++|+||+
T Consensus 84 ~~d~IiIE~sG~a~p------~~l~-~~~~~~~~~~-~~~~iI~vVDa~~~~~~~~~~-~~~~~Qi~~A---DvIvlnK~ 151 (178)
T PF02492_consen 84 RPDRIIIETSGLADP------APLI-LQDPPLKEDF-RLDSIITVVDATNFDELENIP-ELLREQIAFA---DVIVLNKI 151 (178)
T ss_dssp C-SEEEEEEECSSGG------GGHH-HHSHHHHHHE-SESEEEEEEEGTTHGGHTTHC-HHHHHHHCT----SEEEEE-G
T ss_pred CcCEEEECCcccccc------chhh-hccccccccc-cccceeEEeccccccccccch-hhhhhcchhc---CEEEEecc
Confidence 578999999997663 3341 1122233333 346677777664421 11111 2244455433 48999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+++..
T Consensus 152 D~~~~~ 157 (178)
T PF02492_consen 152 DLVSDE 157 (178)
T ss_dssp GGHHHH
T ss_pred ccCChh
Confidence 999766
No 373
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.16 E-value=0.00063 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=25.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccc
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (441)
.--.++.++|-||+||||++..|+|.. -|+.+
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~~-s~vas 88 (358)
T KOG1487|consen 57 TGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAA 88 (358)
T ss_pred ecceeeeEEecCccchhhhhhhhcCCC-Ccccc
Confidence 344578999999999999999999985 34433
No 374
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.001 Score=63.34 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=28.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEe
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (441)
.|.+||.--.|||||..||+|.-. -+. .--.++-+.++|..
T Consensus 12 NIG~vGHVdHGKtTlv~AlsGvwT-~~h-seElkRgitIkLGY 52 (415)
T COG5257 12 NIGMVGHVDHGKTTLTKALSGVWT-DRH-SEELKRGITIKLGY 52 (415)
T ss_pred Eeeeeeecccchhhheehhhceee-ech-hHHHhcCcEEEecc
Confidence 588999999999999999999743 111 22234445555543
No 375
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.14 E-value=0.00081 Score=65.75 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
.-++.|||-||+|||||||+|.....-|+|
T Consensus 252 sIrvGViG~PNVGKSSvINsL~~~k~C~vg 281 (435)
T KOG2484|consen 252 SIRVGIIGYPNVGKSSVINSLKRRKACNVG 281 (435)
T ss_pred ceEeeeecCCCCChhHHHHHHHHhccccCC
Confidence 347999999999999999999988763433
No 376
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.09 E-value=0.00032 Score=62.89 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=68.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
-++||||+-.+|||+||-+.+-.. ||... .||++
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~~-fp~~y-----vPTVF---------------------------------------- 38 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTNA-FPEEY-----VPTVF---------------------------------------- 38 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccCc-Ccccc-----cCeEE----------------------------------------
Confidence 479999999999999998888664 45543 23321
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc-ccc--ccHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN-QDI--ATSD 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~-~~~--~~~~ 195 (441)
.+....+.+.......|.++||.|-.+.. .++-+ .+..+|.++++..-.+ ..+ ..+.
T Consensus 39 -------dnys~~v~V~dg~~v~L~LwDTAGqedYD----------rlRpl---sY~~tdvfl~cfsv~~p~S~~nv~~k 98 (198)
T KOG0393|consen 39 -------DNYSANVTVDDGKPVELGLWDTAGQEDYD----------RLRPL---SYPQTDVFLLCFSVVSPESFENVKSK 98 (198)
T ss_pred -------ccceEEEEecCCCEEEEeeeecCCCcccc----------ccccc---CCCCCCEEEEEEEcCChhhHHHHHhh
Confidence 11122233321233468999999975531 12222 2345676665432211 111 1233
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++.-++..-| +.|+|+|-||.|+.+.
T Consensus 99 W~pEi~~~cp-~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 99 WIPEIKHHCP-NVPIILVGTKADLRDD 124 (198)
T ss_pred hhHHHHhhCC-CCCEEEEeehHHhhhC
Confidence 4444444444 6899999999999843
No 377
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.09 E-value=0.0018 Score=63.37 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|..+|.|--|||||||||.|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 378
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0068 Score=58.28 Aligned_cols=27 Identities=33% Similarity=0.601 Sum_probs=23.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.+.-.|.|+|.||+|||||++.|.+..
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccC
Confidence 366789999999999999999999874
No 379
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.0017 Score=60.57 Aligned_cols=134 Identities=21% Similarity=0.339 Sum_probs=76.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
..|..||..+-|||||++.|...+| ++..|+..--.+.|+..
T Consensus 43 FNilCvGETg~GKsTLmdtLFNt~f---~~~p~~H~~~~V~L~~~----------------------------------- 84 (406)
T KOG3859|consen 43 FNILCVGETGLGKSTLMDTLFNTKF---ESEPSTHTLPNVKLQAN----------------------------------- 84 (406)
T ss_pred EEEEEeccCCccHHHHHHHHhcccc---CCCCCccCCCCceeecc-----------------------------------
Confidence 3599999999999999999999876 22233322111111110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCC-ccHHHHHHHHHHHhhc---------------CCCeEEE
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP-DTIVEDIESMVRSYVE---------------KPNSVIL 182 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~-~~~~~~i~~~v~~yi~---------------~~~~iil 182 (441)
+...- .+.-...|++|||-|+.+--.++.+ .-+.+.+......|+. .-++.++
T Consensus 85 ---Tyelq--------EsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLY 153 (406)
T KOG3859|consen 85 ---TYELQ--------ESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLY 153 (406)
T ss_pred ---hhhhh--------hcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEE
Confidence 00000 0111246899999999874433222 2233334444334432 1235566
Q ss_pred EeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 183 ~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.|...++-.-+.+ ..+.+|. ..++|-|+-|.|.+.+.
T Consensus 154 FI~PTGH~LKslDLv-tmk~Lds-kVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 154 FISPTGHSLKSLDLV-TMKKLDS-KVNIIPVIAKADTISKE 192 (406)
T ss_pred EecCCCcchhHHHHH-HHHHHhh-hhhhHHHHHHhhhhhHH
Confidence 677766665333333 4566664 57889999999998764
No 380
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.00068 Score=65.99 Aligned_cols=81 Identities=25% Similarity=0.357 Sum_probs=49.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+..+++||||-|-.+- ..++-+.+. -+.+++. ||.+|+++++ +. -+.+...++.+...-.-.-++|||+
T Consensus 182 e~fdvIIvDTSGRh~q-----e~sLfeEM~-~v~~ai~-Pd~vi~VmDa-si---GQaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ-----EASLFEEMK-QVSKAIK-PDEIIFVMDA-SI---GQAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred cCCcEEEEeCCCchhh-----hHHHHHHHH-HHHhhcC-CCeEEEEEec-cc---cHhHHHHHHHHHHhhccceEEEEec
Confidence 4569999999998652 333332221 1334444 7877777654 43 3344445555554444567889999
Q ss_pred CCCCCcCcHHHH
Q 013508 218 DLMDKGTNALDV 229 (441)
Q Consensus 218 D~~~~~~~~~~~ 229 (441)
|--.++.-++..
T Consensus 251 DGhakGGgAlSa 262 (483)
T KOG0780|consen 251 DGHAKGGGALSA 262 (483)
T ss_pred ccCCCCCceeee
Confidence 988777654443
No 381
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.93 E-value=0.0024 Score=57.34 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 013508 41 VAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G 60 (441)
+.|+|+.||||||+-+++..
T Consensus 6 ~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred EEEEccCCCCcchHHHHHHH
Confidence 67899999999999999974
No 382
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=96.86 E-value=0.0019 Score=70.21 Aligned_cols=22 Identities=45% Similarity=0.723 Sum_probs=19.8
Q ss_pred ECCCCCcHHHHHHHHhCCCCCcc
Q 013508 44 VGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 44 vG~~ssGKSSllnaL~G~~~lP~ 66 (441)
+|.||+|||||||.|.|..| ++
T Consensus 1 ~g~qssgkstlln~lf~t~f-~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQF-DV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCc-cc
Confidence 49999999999999999986 44
No 383
>PRK01889 GTPase RsgA; Reviewed
Probab=96.83 E-value=0.0016 Score=64.79 Aligned_cols=25 Identities=28% Similarity=0.659 Sum_probs=22.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
-.++++|.+|+|||||+|+|+|...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3799999999999999999999754
No 384
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=96.81 E-value=0.0022 Score=64.99 Aligned_cols=27 Identities=48% Similarity=0.758 Sum_probs=24.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+--.|+|+|+||+|||||||.|.|.+|
T Consensus 36 ~YhVVavmG~QSSGKSTLLN~LFgTnF 62 (772)
T KOG2203|consen 36 SYHVVAVMGSQSSGKSTLLNHLFGTNF 62 (772)
T ss_pred ceeEEEEecCcccchHHHHHHHhccCh
Confidence 556799999999999999999999987
No 385
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.0059 Score=56.58 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
.|+++|+.|||||||||.|.|..- |.+
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~-p~~ 57 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK-PTS 57 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence 589999999999999999999864 543
No 386
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.0043 Score=59.52 Aligned_cols=134 Identities=19% Similarity=0.331 Sum_probs=84.6
Q ss_pred cCCCe--EEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPS--VAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~--IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
.+.|. |.-||.--.||+||--||+..-- . ....++.+++++.+..++
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila--~-----------------------------~g~A~~~kydeID~APEE 98 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILA--E-----------------------------KGGAKFKKYDEIDKAPEE 98 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHH--h-----------------------------ccccccccHhhhhcChhh
Confidence 45565 55699999999999999986421 0 112344455666555443
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A 192 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~ 192 (441)
. ..+++-+.-.++..++. .++.=+|.||.-+ .+++|+....+- |..||+|.+..... .
T Consensus 99 k-------aRGITIn~aHveYeTa~-RhYaH~DCPGHAD------------YIKNMItGaaqM-DGaILVVaatDG~MPQ 157 (449)
T KOG0460|consen 99 K-------ARGITINAAHVEYETAK-RHYAHTDCPGHAD------------YIKNMITGAAQM-DGAILVVAATDGPMPQ 157 (449)
T ss_pred h-------hccceEeeeeeeeeccc-cccccCCCCchHH------------HHHHhhcCcccc-CceEEEEEcCCCCCcc
Confidence 2 24455566667766654 4778899999733 235666554443 45667664433333 2
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+.+-+-||+++.- .++++.+||.|+++..
T Consensus 158 TrEHlLLArQVGV--~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 158 TREHLLLARQVGV--KHIVVFINKVDLVDDP 186 (449)
T ss_pred hHHHHHHHHHcCC--ceEEEEEecccccCCH
Confidence 4455668898853 5677779999999654
No 387
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.76 E-value=0.0018 Score=63.02 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=43.7
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
-+.||||-|.-.+ ++..++..+...-...++|++|+.+.. .-..+-+.-.-..+-|+|+|+||+|+.
T Consensus 202 lVsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvVaAddG~~-~~tkEHLgi~~a~~lPviVvvTK~D~~ 268 (527)
T COG5258 202 LVSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVVAADDGVT-KMTKEHLGIALAMELPVIVVVTKIDMV 268 (527)
T ss_pred EEEEEecCCccHH------------HHHHHHHHhccccceEEEEEEccCCcc-hhhhHhhhhhhhhcCCEEEEEEecccC
Confidence 4689999997432 255666666554345566667776552 222222222234478999999999998
Q ss_pred CCc
Q 013508 221 DKG 223 (441)
Q Consensus 221 ~~~ 223 (441)
+..
T Consensus 269 ~dd 271 (527)
T COG5258 269 PDD 271 (527)
T ss_pred cHH
Confidence 754
No 388
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.60 E-value=0.0053 Score=56.04 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 013508 41 VAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G 60 (441)
-+|||+|||||||..+.+..
T Consensus 5 qvVIGPPgSGKsTYc~g~~~ 24 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQ 24 (290)
T ss_pred eEEEcCCCCCccchhhhHHH
Confidence 47899999999999887763
No 389
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.55 E-value=0.024 Score=48.67 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.++|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 46799999999999999999974
No 390
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.41 E-value=0.0029 Score=55.78 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=24.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGS 68 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~ 68 (441)
-+++|+|+.+||||||+|-+.|... |.+.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~-P~~G 54 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET-PASG 54 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC-CCCc
Confidence 3689999999999999999999864 6543
No 391
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.34 E-value=0.0065 Score=59.38 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
.|.+||-||+||||++|.|-..++
T Consensus 309 SVGfiGYPNvGKSSiINTLR~KkV 332 (572)
T KOG2423|consen 309 SVGFIGYPNVGKSSIINTLRKKKV 332 (572)
T ss_pred eeeeecCCCCchHHHHHHHhhccc
Confidence 467899999999999999977654
No 392
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.28 E-value=0.11 Score=50.47 Aligned_cols=44 Identities=30% Similarity=0.408 Sum_probs=32.6
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCC
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTED 85 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~ 85 (441)
...|+++|||+.++|||||..-|+..-+ . -.|+|+-+.+-.+.+
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~nyav-----k-~gr~Plfv~LDvgQ~ 144 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLNYAV-----K-QGRRPLFVELDVGQG 144 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHHHHH-----H-cCCcceEEEcCCCCC
Confidence 4699999999999999999999986532 1 256666666654433
No 393
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.27 E-value=0.062 Score=51.51 Aligned_cols=61 Identities=25% Similarity=0.385 Sum_probs=38.0
Q ss_pred CCCcEEEEeccCCCCC---CcCc----HHHHHcC--cccccCCCeEEEEeCChhhhccCCcHHHHHHHHHhH
Q 013508 206 TGERTFGVLTKLDLMD---KGTN----ALDVLEG--RSYRLQHPWVGIVNRSQADINRNIDMIVARRKEREY 268 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~---~~~~----~~~~l~~--~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~~e~~f 268 (441)
.|.++++|+||+|.+. .+.+ ..+.++. +.+.+++| ..++..|.++ .++++.+..+...+.|
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE-~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKE-TKNIDLLYKYIVHRSY 290 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeeccc-ccchHHHHHHHHHHhc
Confidence 5899999999999963 2222 2333332 24667777 4455556655 5667777776665544
No 394
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.26 E-value=0.0047 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
+..+|.|+.+|||||++.|+.=
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 395
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.0011 Score=64.91 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=75.8
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
...++..|.|+..-.+||+|.-+.|+-..-.-+..|-+. .+...+||-.+
T Consensus 33 ~~akirnigiiahidagktttterily~ag~~~s~g~vd------------------------dgdtvtdfla~------ 82 (753)
T KOG0464|consen 33 AIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVD------------------------DGDTVTDFLAI------ 82 (753)
T ss_pred chhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccC------------------------CCchHHHHHHH------
Confidence 334566799999999999999999874321001111110 01122222222
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
++++ |.+ +-+..+ -+.+....+.+|||||..+.... +.+.++--|.++.+ .+++.+...
T Consensus 83 erer--git--iqsaav---~fdwkg~rinlidtpghvdf~le-------------verclrvldgavav-~dasagve~ 141 (753)
T KOG0464|consen 83 ERER--GIT--IQSAAV---NFDWKGHRINLIDTPGHVDFRLE-------------VERCLRVLDGAVAV-FDASAGVEA 141 (753)
T ss_pred HHhc--Cce--eeeeee---ecccccceEeeecCCCcceEEEE-------------HHHHHHHhcCeEEE-EeccCCccc
Confidence 2221 210 111111 13456678999999999876321 22233333444444 455555433
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+..-++.+....|.++.+||+|....
T Consensus 142 -qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 142 -QTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred -ceeeeehhccccCCchhhhhhhhhhhhh
Confidence 3344556778888999999999998754
No 396
>PRK13695 putative NTPase; Provisional
Probab=96.15 E-value=0.025 Score=50.20 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.+++|||||+..+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998765
No 397
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.14 E-value=0.0065 Score=58.92 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
+|+|||+-.+||||||--|+...
T Consensus 135 RVAVVGNVDAGKSTLLGVLTHge 157 (641)
T KOG0463|consen 135 RVAVVGNVDAGKSTLLGVLTHGE 157 (641)
T ss_pred EEEEEecccCCcceeEeeeeecc
Confidence 69999999999999998888655
No 398
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.13 E-value=0.0051 Score=52.43 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|+++|+.+||||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 399
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.09 E-value=0.038 Score=47.15 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=39.7
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.++++||+|+... ......+..+|.+++++.+...++.. ...++.+.... ...+..+|+|+++
T Consensus 45 yd~VIiD~p~~~~---------------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~ 108 (139)
T cd02038 45 YDYIIIDTGAGIS---------------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL-RVLNFRVVVNRAE 108 (139)
T ss_pred CCEEEEECCCCCC---------------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 6899999998543 22345677788888777664433211 22232232221 3467889999987
Q ss_pred CCC
Q 013508 219 LMD 221 (441)
Q Consensus 219 ~~~ 221 (441)
...
T Consensus 109 ~~~ 111 (139)
T cd02038 109 SPK 111 (139)
T ss_pred CHH
Confidence 543
No 400
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.08 E-value=0.056 Score=43.78 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=37.7
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-cHHHHHHHHHhCCC-CCcEEEEecc
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAMKLAREVDPT-GERTFGVLTK 216 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-~~~~l~l~~~~~~~-~~r~i~VltK 216 (441)
++++||+|+... ......+..+|.+++++.+...... ....++.+++.... ..+..+|+|+
T Consensus 44 D~IIiDtpp~~~---------------~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD---------------EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC---------------HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 899999999754 2233455667877777765443332 23334455555543 5678888886
No 401
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.06 E-value=0.014 Score=41.19 Aligned_cols=52 Identities=21% Similarity=0.440 Sum_probs=30.4
Q ss_pred HHHHHHhhcC-CCeEEEEeccCcc-ccccHHHHHHHHHhCCC--CCcEEEEeccCC
Q 013508 167 ESMVRSYVEK-PNSVILAISPANQ-DIATSDAMKLAREVDPT--GERTFGVLTKLD 218 (441)
Q Consensus 167 ~~~v~~yi~~-~~~iil~v~~a~~-~~~~~~~l~l~~~~~~~--~~r~i~VltK~D 218 (441)
+..+-..+++ +++|+++++++.. +..-++-+.+.+++.+. +.|.+.|+||+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4555566666 5666666666544 45455666677777654 689999999998
No 402
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.02 E-value=0.004 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.788 Sum_probs=17.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
+|+|+|.+|+|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 5999999999999999999865
No 403
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.99 E-value=0.037 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|..+|.|--+||||||||.++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 404
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.96 E-value=0.07 Score=56.19 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.+++||+.|||||||++.|+|.-
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999973
No 405
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.95 E-value=0.0054 Score=51.93 Aligned_cols=23 Identities=43% Similarity=0.619 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|..+||||||+++|+|..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999999984
No 406
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.91 E-value=0.0069 Score=54.83 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
-.|.|+|..+||||||+|+|.|.- .|.+
T Consensus 33 ~FvtViGsNGAGKSTlln~iaG~l-~~t~ 60 (263)
T COG1101 33 DFVTVIGSNGAGKSTLLNAIAGDL-KPTS 60 (263)
T ss_pred ceEEEEcCCCccHHHHHHHhhCcc-ccCC
Confidence 369999999999999999999983 3443
No 407
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.86 E-value=0.015 Score=50.43 Aligned_cols=54 Identities=28% Similarity=0.370 Sum_probs=35.6
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+++++.+++++|.++++++. ....... ...+...+...+.|.++|+||+|+.+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~-~~~~~~~-~~~l~~~~~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDA-RDPELTR-SRKLERYVLELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeC-CCCcccC-CHHHHHHHHhCCCcEEEEEEhHHhCCH
Confidence 57788888889977777654 3322122 223444444457899999999998743
No 408
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.0099 Score=56.71 Aligned_cols=47 Identities=17% Similarity=0.359 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCeEEEEeccCc---cccccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 168 SMVRSYVEKPNSVILAISPAN---QDIATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 168 ~~v~~yi~~~~~iil~v~~a~---~~~~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
.+++....+|. |+|+ +-+. ++-.++..+++++.++..-.=||+.+|+
T Consensus 151 aIARALa~~P~-iLL~-DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 151 AIARALANNPK-ILLC-DEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHhcCCC-EEEe-cCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 56777777787 4444 3333 3445677889999998777779999987
No 409
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.84 E-value=0.0068 Score=54.27 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHh---CCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVV---GRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~---G~~ 62 (441)
+.|.|+|+|.+||||||+.+.|. |..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999998 654
No 410
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.83 E-value=0.091 Score=56.12 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
.+++||+.|||||||++.|+|.- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~--p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL--PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CC
Confidence 48999999999999999999974 64
No 411
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.79 E-value=0.0093 Score=53.12 Aligned_cols=22 Identities=18% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+++|||||+++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999985
No 412
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.79 E-value=0.0078 Score=54.16 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+++|||||++++|+|.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999986
No 413
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.72 E-value=0.11 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.|..+|-|-=|||||||||.|+-..
T Consensus 1 ipVtvitGFLGsGKTTlL~~lL~~~ 25 (323)
T COG0523 1 IPVTVITGFLGSGKTTLLNHLLANR 25 (323)
T ss_pred CCEEEEeecCCCCHHHHHHHHHhcc
Confidence 4788999999999999999999664
No 414
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.71 E-value=0.0079 Score=51.49 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
|.|.|||..|||||||++.|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 415
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.68 E-value=0.068 Score=55.87 Aligned_cols=35 Identities=34% Similarity=0.547 Sum_probs=27.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccccccccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (441)
-+|.+||..|+||||||+.|.|.. .|.+ |.+++.+
T Consensus 30 ~riGLvG~NGaGKSTLLkilaG~~-~~~~-G~i~~~~ 64 (530)
T COG0488 30 ERIGLVGRNGAGKSTLLKILAGEL-EPDS-GEVTRPK 64 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC-cCCC-CeEeecC
Confidence 479999999999999999999985 3554 4444433
No 416
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.64 E-value=0.047 Score=49.09 Aligned_cols=54 Identities=19% Similarity=0.075 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 166 IESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 166 i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.++..|+++++.++++++....+...... +.. ...+.++++|+||+|+.++.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~--l~~--~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPR--LRL--FGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchh--HHH--hcCCCcEEEEEEchhcCCCC
Confidence 5788999999999888877654322111111 211 12467999999999998644
No 417
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.58 E-value=0.011 Score=53.95 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC-CCccccccccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p 75 (441)
.|+++|.++||||||++.|.+.. -+......+||.|
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p 43 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAP 43 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCccceeccCccccCC
Confidence 58999999999999999999862 1223334567766
No 418
>PLN03232 ABC transporter C family member; Provisional
Probab=95.58 E-value=0.14 Score=60.49 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||+++|+|.-
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~ 667 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGEL 667 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999973
No 419
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.01 Score=52.59 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccccccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRP 75 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p 75 (441)
-+++.|+.|+|||||+.+|....-+--+...+||.|
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~p 41 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKP 41 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCC
Confidence 488999999999999999997753444456677766
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.51 E-value=0.15 Score=39.54 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|++.|..++||||+...|...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688899999999999998754
No 421
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.48 E-value=0.013 Score=43.39 Aligned_cols=21 Identities=38% Similarity=0.702 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|+++|.++|||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 422
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.012 Score=60.54 Aligned_cols=71 Identities=17% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 137 PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 137 ~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
+...++.+|||||..+.... |.+.++--|..|+++++. .+. .+.....-++....+.|.|.-+||
T Consensus 101 w~~~~iNiIDTPGHvDFT~E-------------VeRALrVlDGaVlvl~aV-~GV-qsQt~tV~rQ~~ry~vP~i~FiNK 165 (721)
T KOG0465|consen 101 WRDYRINIIDTPGHVDFTFE-------------VERALRVLDGAVLVLDAV-AGV-ESQTETVWRQMKRYNVPRICFINK 165 (721)
T ss_pred eccceeEEecCCCceeEEEE-------------ehhhhhhccCeEEEEEcc-cce-ehhhHHHHHHHHhcCCCeEEEEeh
Confidence 44679999999999886432 233344334444444331 222 333344556666678999999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|.+..
T Consensus 166 mDRmGa 171 (721)
T KOG0465|consen 166 MDRMGA 171 (721)
T ss_pred hhhcCC
Confidence 999854
No 423
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.46 E-value=0.22 Score=54.53 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.|+|||+.|||||||++.|+|.-
T Consensus 507 ~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 507 RVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999999974
No 424
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.45 E-value=0.014 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 425
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.014 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 426
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.072 Score=60.11 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=45.5
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHH---HHHHHHHhhc--CCCeEEEEeccCcc---ccccHHH--------HHHHHHhC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVED---IESMVRSYVE--KPNSVILAISPANQ---DIATSDA--------MKLAREVD 204 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~---i~~~v~~yi~--~~~~iil~v~~a~~---~~~~~~~--------l~l~~~~~ 204 (441)
.-++|||-|-+.... ++++..... .-.+.++|-. .-|.||+.++-+.- +.+...+ ++-+++--
T Consensus 175 eaVlIDtaGry~~q~-s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 175 EAVLIDTAGRYITQD-SADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred ceEEEcCCcceeccc-CcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999876432 122222222 2245666644 35778888754321 1111101 11122223
Q ss_pred CCCCcEEEEeccCCCCCCc
Q 013508 205 PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 205 ~~~~r~i~VltK~D~~~~~ 223 (441)
...-|+.+++||.|++..-
T Consensus 254 ~~~~PVYl~lTk~Dll~GF 272 (1188)
T COG3523 254 HARLPVYLVLTKADLLPGF 272 (1188)
T ss_pred ccCCceEEEEecccccccH
Confidence 4578999999999999744
No 427
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.42 E-value=0.012 Score=48.59 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|.++|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 428
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.42 E-value=0.016 Score=52.11 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=26.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCC-CCccccccccccc
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRP 75 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p 75 (441)
..-|+++|++|||||||++.|+... -+......+||.|
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~ 42 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP 42 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC
Confidence 3458999999999999999998752 1122224455554
No 429
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.39 E-value=0.015 Score=53.63 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||++.|+|.-
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999973
No 430
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.082 Score=51.20 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=49.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHH---HHHHHhhcC-CCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIE---SMVRSYVEK-PNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~---~~v~~yi~~-~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
..++.|+||.|--.+. ..+.+.++ +.+...+.. |+-+ ++|.+|.. -+.++.-++.+...-.=+=+|+
T Consensus 221 ~~DvvliDTAGRLhnk-----~nLM~EL~KI~rV~~k~~~~ap~e~-llvlDAtt---Gqnal~QAk~F~eav~l~GiIl 291 (340)
T COG0552 221 GIDVVLIDTAGRLHNK-----KNLMDELKKIVRVIKKDDPDAPHEI-LLVLDATT---GQNALSQAKIFNEAVGLDGIIL 291 (340)
T ss_pred CCCEEEEeCcccccCc-----hhHHHHHHHHHHHhccccCCCCceE-EEEEEccc---ChhHHHHHHHHHHhcCCceEEE
Confidence 4689999999987653 33333333 333344433 4434 44544443 4566666776665545577899
Q ss_pred ccCCCCCCcCcHHHH
Q 013508 215 TKLDLMDKGTNALDV 229 (441)
Q Consensus 215 tK~D~~~~~~~~~~~ 229 (441)
||+|-..++.-+..+
T Consensus 292 TKlDgtAKGG~il~I 306 (340)
T COG0552 292 TKLDGTAKGGIILSI 306 (340)
T ss_pred EecccCCCcceeeeH
Confidence 999977777654443
No 431
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.38 E-value=0.014 Score=51.05 Aligned_cols=30 Identities=37% Similarity=0.706 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (441)
.+.|||..+||||||+++|.++ ++-.+|.+
T Consensus 34 VLgiVGESGSGKtTLL~~is~r--l~p~~G~v 63 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGR--LTPDAGTV 63 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcc--cCCCCCeE
Confidence 4789999999999999999998 33344443
No 432
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.37 E-value=0.23 Score=45.11 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 013508 40 SVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (441)
.++++|+.++|||||+..|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 433
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.35 E-value=0.0099 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|+.|+||||++..|...
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~ 217 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAAR 217 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999865
No 434
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.34 E-value=0.015 Score=53.31 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999997
No 435
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.30 E-value=0.32 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.++|||||+..|.+.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHH
Confidence 6999999999999999999943
No 436
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.27 E-value=0.016 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 437
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.017 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999997
No 438
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.26 E-value=0.023 Score=51.83 Aligned_cols=77 Identities=16% Similarity=0.273 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-----cHHHHHHHHHhCCCCCcEEEEe
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-----TSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-----~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
.-|.++|.-|... .++......-..-.++.+++|.+.+....++. .+.+++.+.+..| ..+.++.+
T Consensus 53 l~LnlwDcGgqe~--------fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~ 123 (295)
T KOG3886|consen 53 LVLNLWDCGGQEE--------FMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLL 123 (295)
T ss_pred heeehhccCCcHH--------HHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEE
Confidence 4577899888621 11111111111223456667776655444331 2445555555555 47899999
Q ss_pred ccCCCCCCcCc
Q 013508 215 TKLDLMDKGTN 225 (441)
Q Consensus 215 tK~D~~~~~~~ 225 (441)
+|.|++..+.+
T Consensus 124 hKmDLv~~d~r 134 (295)
T KOG3886|consen 124 HKMDLVQEDAR 134 (295)
T ss_pred eechhcccchH
Confidence 99999976643
No 439
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.26 E-value=0.036 Score=54.09 Aligned_cols=30 Identities=33% Similarity=0.699 Sum_probs=24.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI 70 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~ 70 (441)
-.|+|+|+++||||||+++|++. +|...++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~--~~~~~~i 174 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE--IPKDERI 174 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc--CCccccE
Confidence 47999999999999999999986 4554444
No 440
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.26 E-value=0.017 Score=53.28 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 441
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.24 E-value=0.018 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|..|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999999974
No 442
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.23 E-value=0.018 Score=53.59 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 443
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.23 E-value=0.015 Score=57.33 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=26.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccc
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (441)
.-..|+|+|++||||||++++|++. +|.+..++|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivt 194 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA--IPPQERLIT 194 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEE
Confidence 3456999999999999999999986 465555544
No 444
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.22 E-value=0.018 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 445
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.019 Score=52.03 Aligned_cols=27 Identities=30% Similarity=0.646 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRG 67 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~ 67 (441)
..+|+|+.+||||||+.+|+|. +.|.+
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe-l~p~~ 55 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE-LSPDS 55 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc-cCCCC
Confidence 5889999999999999999998 34544
No 446
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.22 E-value=0.019 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.+||||||++.|.|..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999984
No 447
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.22 E-value=0.045 Score=47.59 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 170 VRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 170 v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+++.+.++|.++++++ +..... .....+.++.. ..+.|.|+|+||+|+.++.
T Consensus 2 ~~~~l~~aD~il~VvD-~~~p~~~~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~ 55 (157)
T cd01858 2 LYKVIDSSDVVIQVLD-ARDPMGTRCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred hhHhhhhCCEEEEEEE-CCCCccccCHHHHHHHHhc-cCCCCEEEEEEchhcCCHH
Confidence 3566778897666665 443322 33334444432 3358999999999998653
No 448
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.19 E-value=0.016 Score=51.72 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=22.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
--.++++|+.+||||||++.|+|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3468899999999999999999974
No 449
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.19 E-value=0.3 Score=38.98 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a 187 (441)
.++++||+|+... ......+..+|.+|+++.+.
T Consensus 40 ~d~viiD~p~~~~---------------~~~~~~l~~ad~viv~~~~~ 72 (104)
T cd02042 40 YDYIIIDTPPSLG---------------LLTRNALAAADLVLIPVQPS 72 (104)
T ss_pred CCEEEEeCcCCCC---------------HHHHHHHHHCCEEEEeccCC
Confidence 6899999999754 22335566688887776553
No 450
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.019 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 451
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.021 Score=50.94 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999973
No 452
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.02 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 453
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.13 E-value=0.025 Score=52.71 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 7 LIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 7 l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+++++|...+.. . .....|+++|.++||||||++.|.+.
T Consensus 16 ~~~l~~~~~~~~~~----~----------~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 16 HKPLLRRLAALQAE----P----------QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred HHHHHHHHHHHHhc----C----------CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55677777666541 1 13446889999999999999999986
No 454
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.12 E-value=0.02 Score=52.46 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|..+|||||++++|+|.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl 52 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGL 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999997
No 455
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.019 Score=53.60 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 456
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=95.12 E-value=0.16 Score=50.75 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=78.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhh-cCCCccccChHHHHHHHHHHHhhh
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFL-HLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.|.|||+--+|||||+..++..-++|.=...--|.-. ..+.. ...|+.+ .
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa-------------~DELPQS~aGktI----------------m 69 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERA-------------RDELPQSGAGKTI----------------M 69 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHh-------------hhcCCcCCCCCce----------------e
Confidence 5999999999999999999987666643221111000 00000 0000000 0
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCcc----------------HHHHHHHHHHHhhcCCCeEEE
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDT----------------IVEDIESMVRSYVEKPNSVIL 182 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~----------------~~~~i~~~v~~yi~~~~~iil 182 (441)
+...+-+....+.+.+...-..++.+||.-|+.-....|.-++ ..+..+-=+++-|.+-.+|=+
T Consensus 70 TTEPKFiP~eAv~I~l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGi 149 (492)
T PF09547_consen 70 TTEPKFIPNEAVEITLDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGI 149 (492)
T ss_pred ccCCcccCCcceEEEecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeE
Confidence 0112334455666666655556788888888753222111111 111111123445555444434
Q ss_pred Ee-ccCc-cccccHH----HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 183 AI-SPAN-QDIATSD----AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 183 ~v-~~a~-~~~~~~~----~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
+| ++++ .++.... .-+...++...|+|.++++|-.+--.
T Consensus 150 VVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s 194 (492)
T PF09547_consen 150 VVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYS 194 (492)
T ss_pred EEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCC
Confidence 43 3433 2332222 12366777788999999999877443
No 457
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.11 E-value=0.015 Score=49.43 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|+++|.|+|||||+...|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 458
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.11 E-value=0.021 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 459
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.11 E-value=0.018 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 460
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.021 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.++|||||++.|+|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48899999999999999999973
No 461
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.07 E-value=0.021 Score=53.80 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.||||||||.+|.|.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999999996
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.07 E-value=0.1 Score=49.74 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|+|+|.++|||||++++++..
T Consensus 82 lilisG~tGSGKTT~l~all~~ 103 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSE 103 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 5999999999999999999865
No 463
>PLN03130 ABC transporter C family member; Provisional
Probab=95.07 E-value=0.21 Score=59.50 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|||+.|||||||+++|+|.-
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~ 667 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGEL 667 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999973
No 464
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.07 E-value=0.021 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.++|||||++.|.|..
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 465
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.05 E-value=0.023 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.++|||||++.|.|..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999973
No 466
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.04 E-value=0.022 Score=52.43 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48899999999999999999973
No 467
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.03 E-value=0.021 Score=53.24 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999999997
No 468
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=95.02 E-value=0.27 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.|++||+.|||||||++.|+|.-
T Consensus 481 ~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 481 FVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 469
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.01 E-value=0.023 Score=51.97 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|..++|||||++.|+|..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999973
No 470
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=95.01 E-value=0.023 Score=53.50 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+.+.|+++.|.++++++..+....-...-+++..+...+.+.++|+||+|+.+..
T Consensus 27 ~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~ 83 (245)
T TIGR00157 27 NELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE 83 (245)
T ss_pred ceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH
Confidence 456777899999888877543333222222223333334578999999999997543
No 471
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.01 E-value=0.32 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.|+++|+.|||||||++.|+|.-
T Consensus 502 ~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 502 KTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 59999999999999999999973
No 472
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.00 E-value=0.02 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.|||||||++.|.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999973
No 473
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.99 E-value=0.022 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|+|..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999974
No 474
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.99 E-value=0.022 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.+||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999973
No 475
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.025 Score=49.21 Aligned_cols=32 Identities=38% Similarity=0.487 Sum_probs=25.2
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (441)
..++++|+.++|||||+++|.|.- |...|.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~ 57 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEIL 57 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEE
Confidence 478899999999999999999973 33444443
No 476
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.98 E-value=0.023 Score=55.44 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~ 57 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALL 57 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 69999999999999999999973
No 477
>PRK08118 topology modulation protein; Reviewed
Probab=94.95 E-value=0.022 Score=50.32 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
++|+|+|.+|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 478
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.95 E-value=0.019 Score=50.86 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.|+|+|..|||||||+++|++.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4678999999999999999999976
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.021 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999973
No 480
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.94 E-value=0.02 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 481
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.93 E-value=0.023 Score=53.22 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999999973
No 482
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.93 E-value=0.023 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|.|.-
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 58899999999999999999973
No 483
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.93 E-value=0.025 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
No 484
>PHA02518 ParA-like protein; Provisional
Probab=94.93 E-value=0.53 Score=42.74 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=38.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHHHHHHHHh---CCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREV---DPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~l~l~~~~---~~~~~r~i~Vl 214 (441)
..+++||||||-.. .+.+..+..+|.+|+.+.+...++.. ....++++.. .+...+..+|.
T Consensus 76 ~~d~viiD~p~~~~---------------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 140 (211)
T PHA02518 76 GYDYVVVDGAPQDS---------------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFII 140 (211)
T ss_pred cCCEEEEeCCCCcc---------------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEE
Confidence 46899999999632 45666777889888877765544322 1222333332 22223345666
Q ss_pred ccCCC
Q 013508 215 TKLDL 219 (441)
Q Consensus 215 tK~D~ 219 (441)
|+.+.
T Consensus 141 n~~~~ 145 (211)
T PHA02518 141 SRAIK 145 (211)
T ss_pred eccCC
Confidence 77653
No 485
>PRK12289 GTPase RsgA; Reviewed
Probab=94.93 E-value=0.031 Score=55.39 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=35.6
Q ss_pred HHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 168 SMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 168 ~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+.+.++.+.|.+++++...+.++.....-+++..+...+.+.|+|+||+|++++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 4566778899977777754433332222223333344468999999999999854
No 486
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=94.92 E-value=0.1 Score=42.73 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
+|+++|+.++||||++..+....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965544
No 487
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.92 E-value=0.023 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.91 E-value=0.019 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|.+|||||||+++|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 489
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.91 E-value=0.025 Score=52.83 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.+||||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999974
No 490
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.90 E-value=0.025 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.++|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999984
No 491
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.90 E-value=0.026 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 492
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.90 E-value=0.021 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.|+++|+.|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999998863
No 493
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.028 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999974
No 494
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.026 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.+||||||++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 495
>PRK10908 cell division protein FtsE; Provisional
Probab=94.88 E-value=0.026 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.+||||||++.|.|..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999974
No 496
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.026 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 497
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.87 E-value=0.026 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||++.|+|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 498
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.87 E-value=0.02 Score=56.31 Aligned_cols=31 Identities=19% Similarity=0.505 Sum_probs=24.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (441)
-.|+|+|.+||||||++|+|++. .|.+..++
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~--ip~~~ri~ 191 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALRE--IPAIERLI 191 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhh--CCCCCeEE
Confidence 46999999999999999999875 46544333
No 499
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.87 E-value=0.027 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.++|||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.85 E-value=0.031 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
-.+++||+.||||||||.+|-|..-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCcC
Confidence 3588999999999999999999864
Done!