Query 013508
Match_columns 441
No_of_seqs 335 out of 3010
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:54:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 2.9E-70 9.8E-75 579.1 40.6 424 3-438 25-456 (772)
2 3szr_A Interferon-induced GTP- 100.0 2.2E-56 7.4E-61 470.9 35.9 417 9-437 26-455 (608)
3 3t34_A Dynamin-related protein 100.0 1E-51 3.5E-56 410.7 27.7 331 4-335 1-331 (360)
4 2x2e_A Dynamin-1; nitration, h 100.0 2.2E-48 7.6E-53 385.5 33.9 338 3-352 5-344 (353)
5 1jwy_B Dynamin A GTPase domain 100.0 8.7E-41 3E-45 325.8 28.3 310 5-324 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 100.0 4E-39 1.4E-43 311.5 32.1 298 4-313 1-298 (299)
7 3iev_A GTP-binding protein ERA 99.8 5.2E-19 1.8E-23 171.3 11.8 242 37-340 9-256 (308)
8 2j69_A Bacterial dynamin-like 99.8 2E-18 7E-23 184.2 16.9 175 34-222 65-245 (695)
9 1wf3_A GTP-binding protein; GT 99.8 3.7E-19 1.3E-23 171.5 7.1 235 37-340 6-246 (301)
10 1ega_A Protein (GTP-binding pr 99.7 4.9E-18 1.7E-22 163.8 -0.4 236 37-340 7-247 (301)
11 3iby_A Ferrous iron transport 99.7 9.1E-17 3.1E-21 151.3 7.2 124 38-223 1-126 (256)
12 4dhe_A Probable GTP-binding pr 99.6 8.6E-15 2.9E-19 134.2 9.8 129 36-223 27-160 (223)
13 3b1v_A Ferrous iron uptake tra 99.5 1.5E-14 5.3E-19 137.1 10.9 117 38-221 3-121 (272)
14 2xtp_A GTPase IMAP family memb 99.5 7.1E-15 2.4E-19 138.5 8.6 126 37-221 21-153 (260)
15 3i8s_A Ferrous iron transport 99.5 3.9E-15 1.3E-19 141.6 5.2 122 38-222 3-127 (274)
16 2qu8_A Putative nucleolar GTP- 99.5 2.7E-14 9.3E-19 131.7 10.5 137 28-223 19-158 (228)
17 3a1s_A Iron(II) transport prot 99.5 1.3E-14 4.3E-19 136.8 8.3 119 38-222 5-125 (258)
18 3pqc_A Probable GTP-binding pr 99.5 2.9E-14 1E-18 127.3 10.0 125 36-223 21-149 (195)
19 1kao_A RAP2A; GTP-binding prot 99.5 5E-14 1.7E-18 122.1 11.0 154 39-259 4-160 (167)
20 3tkl_A RAS-related protein RAB 99.5 5.1E-14 1.8E-18 126.0 10.9 158 37-260 15-174 (196)
21 1svi_A GTP-binding protein YSX 99.5 2.7E-14 9.1E-19 127.9 8.8 126 37-223 22-150 (195)
22 3k53_A Ferrous iron transport 99.5 5.5E-15 1.9E-19 140.3 3.8 117 38-221 3-123 (271)
23 3lxw_A GTPase IMAP family memb 99.5 4.5E-14 1.6E-18 132.1 10.0 129 37-221 20-153 (247)
24 1xzp_A Probable tRNA modificat 99.5 1.4E-13 4.7E-18 140.5 14.3 158 38-262 243-402 (482)
25 1mky_A Probable GTP-binding pr 99.5 1.6E-14 5.6E-19 146.5 7.4 162 38-264 1-165 (439)
26 3t5d_A Septin-7; GTP-binding p 99.5 9.7E-14 3.3E-18 131.9 11.6 138 38-223 8-160 (274)
27 2lkc_A Translation initiation 99.5 4.7E-14 1.6E-18 124.2 8.0 117 36-222 6-122 (178)
28 2dyk_A GTP-binding protein; GT 99.5 5.4E-14 1.9E-18 121.5 8.3 120 38-222 1-123 (161)
29 2oil_A CATX-8, RAS-related pro 99.5 7.2E-14 2.5E-18 125.0 9.2 120 37-222 24-145 (193)
30 1g16_A RAS-related protein SEC 99.5 4.1E-14 1.4E-18 123.3 7.3 117 38-221 3-122 (170)
31 3gee_A MNME, tRNA modification 99.5 1.5E-14 5.1E-19 147.5 5.2 126 37-223 232-359 (476)
32 1zbd_A Rabphilin-3A; G protein 99.5 1.6E-13 5.4E-18 123.8 11.3 121 37-223 7-129 (203)
33 3q72_A GTP-binding protein RAD 99.5 5.9E-14 2E-18 122.0 8.1 117 38-223 2-122 (166)
34 1z08_A RAS-related protein RAB 99.5 3.4E-14 1.2E-18 124.0 6.6 120 37-222 5-126 (170)
35 3lxx_A GTPase IMAP family memb 99.5 8.2E-14 2.8E-18 129.6 9.3 130 37-223 28-161 (239)
36 2a9k_A RAS-related protein RAL 99.5 1.6E-13 5.4E-18 121.5 10.7 119 37-222 17-138 (187)
37 2g6b_A RAS-related protein RAB 99.5 9.5E-14 3.2E-18 122.4 9.1 122 37-223 9-132 (180)
38 1z0j_A RAB-22, RAS-related pro 99.5 7.8E-14 2.7E-18 121.6 8.5 120 38-223 6-127 (170)
39 2hjg_A GTP-binding protein ENG 99.5 5E-14 1.7E-18 142.8 8.3 124 38-222 3-126 (436)
40 1u8z_A RAS-related protein RAL 99.5 1E-13 3.4E-18 120.4 9.1 118 38-222 4-124 (168)
41 3bc1_A RAS-related protein RAB 99.5 2.4E-13 8.4E-18 121.0 11.8 70 140-222 70-142 (195)
42 1z0f_A RAB14, member RAS oncog 99.5 9.9E-14 3.4E-18 121.9 9.1 120 37-222 14-135 (179)
43 2il1_A RAB12; G-protein, GDP, 99.5 9.4E-14 3.2E-18 124.5 9.1 120 37-222 25-146 (192)
44 2qpt_A EH domain-containing pr 99.5 8.6E-14 2.9E-18 144.6 10.1 168 36-223 63-234 (550)
45 2bme_A RAB4A, RAS-related prot 99.5 9.2E-14 3.1E-18 123.3 8.9 120 37-222 9-130 (186)
46 3tw8_B RAS-related protein RAB 99.5 2.5E-14 8.4E-19 126.1 5.1 119 36-222 7-128 (181)
47 3cph_A RAS-related protein SEC 99.5 1E-13 3.5E-18 125.9 8.9 161 36-263 18-180 (213)
48 2bov_A RAla, RAS-related prote 99.5 2.3E-13 7.8E-18 122.8 11.1 119 37-222 13-134 (206)
49 2fg5_A RAB-22B, RAS-related pr 99.5 5.2E-14 1.8E-18 126.1 6.7 120 37-222 22-143 (192)
50 1c1y_A RAS-related protein RAP 99.5 1.1E-13 3.7E-18 120.3 8.2 117 39-222 4-123 (167)
51 3geh_A MNME, tRNA modification 99.5 4.4E-14 1.5E-18 143.5 6.5 155 38-259 224-378 (462)
52 2nzj_A GTP-binding protein REM 99.5 1.5E-13 5.2E-18 120.4 8.9 122 37-223 3-127 (175)
53 3ljb_A Interferon-induced GTP- 99.5 8.4E-14 2.9E-18 130.0 7.6 107 332-438 3-116 (271)
54 2gf9_A RAS-related protein RAB 99.5 1.2E-13 4E-18 123.3 8.3 120 37-222 21-142 (189)
55 2ew1_A RAS-related protein RAB 99.4 1.5E-13 5.2E-18 124.3 9.0 120 37-222 25-146 (201)
56 3clv_A RAB5 protein, putative; 99.4 2.2E-13 7.6E-18 122.2 10.0 65 140-218 93-158 (208)
57 4dcu_A GTP-binding protein ENG 99.4 1.7E-13 5.9E-18 139.6 10.3 126 36-222 21-146 (456)
58 4dsu_A GTPase KRAS, isoform 2B 99.4 3E-13 1E-17 120.0 10.7 118 39-223 5-125 (189)
59 1upt_A ARL1, ADP-ribosylation 99.4 1.4E-13 4.8E-18 120.1 8.3 115 37-223 6-124 (171)
60 1wms_A RAB-9, RAB9, RAS-relate 99.4 2.9E-13 1E-17 118.9 10.1 120 37-222 6-131 (177)
61 2qtf_A Protein HFLX, GTP-bindi 99.4 7.5E-13 2.6E-17 130.6 14.1 128 36-223 177-308 (364)
62 2bcg_Y Protein YP2, GTP-bindin 99.4 1.5E-13 5.2E-18 124.3 8.5 121 37-223 7-129 (206)
63 2y8e_A RAB-protein 6, GH09086P 99.4 9.1E-14 3.1E-18 122.2 6.8 119 39-223 15-135 (179)
64 3dz8_A RAS-related protein RAB 99.4 9.2E-14 3.1E-18 124.3 6.8 121 36-222 21-143 (191)
65 2gj8_A MNME, tRNA modification 99.4 3.7E-13 1.3E-17 118.5 10.5 125 38-221 4-129 (172)
66 1ek0_A Protein (GTP-binding pr 99.4 1.6E-13 5.5E-18 119.4 8.1 117 39-222 4-123 (170)
67 2a5j_A RAS-related protein RAB 99.4 1.6E-13 5.4E-18 122.7 8.2 120 37-222 20-141 (191)
68 3kkq_A RAS-related protein M-R 99.4 2.8E-13 9.4E-18 119.9 9.6 152 37-255 17-172 (183)
69 4djt_A GTP-binding nuclear pro 99.4 5.7E-14 1.9E-18 128.3 5.2 110 140-262 61-172 (218)
70 2efe_B Small GTP-binding prote 99.4 3E-13 1E-17 119.3 9.6 121 37-223 11-133 (181)
71 2fn4_A P23, RAS-related protei 99.4 1.3E-13 4.4E-18 121.4 7.3 119 37-222 8-129 (181)
72 2ce2_X GTPase HRAS; signaling 99.4 2.1E-13 7.1E-18 117.9 8.4 117 39-222 4-123 (166)
73 2erx_A GTP-binding protein DI- 99.4 1.5E-13 5.2E-18 119.8 7.5 71 140-223 51-125 (172)
74 2f7s_A C25KG, RAS-related prot 99.4 3.1E-13 1.1E-17 123.3 9.9 69 140-222 84-156 (217)
75 2hup_A RAS-related protein RAB 99.4 4.2E-13 1.4E-17 121.2 10.3 120 37-222 28-149 (201)
76 1z2a_A RAS-related protein RAB 99.4 1E-13 3.6E-18 120.5 5.8 119 37-222 4-124 (168)
77 1z06_A RAS-related protein RAB 99.4 2.3E-13 7.9E-18 121.4 8.1 120 37-222 19-142 (189)
78 1r8s_A ADP-ribosylation factor 99.4 6.4E-13 2.2E-17 115.2 10.7 111 40-222 2-116 (164)
79 4bas_A ADP-ribosylation factor 99.4 3.8E-13 1.3E-17 120.6 9.5 118 36-223 15-143 (199)
80 2wji_A Ferrous iron transport 99.4 7.6E-14 2.6E-18 121.9 4.6 117 39-221 4-122 (165)
81 3q85_A GTP-binding protein REM 99.4 3E-13 1E-17 117.9 8.2 121 38-223 2-125 (169)
82 2h57_A ADP-ribosylation factor 99.4 2.9E-13 1E-17 120.8 8.3 118 36-222 19-141 (190)
83 2cxx_A Probable GTP-binding pr 99.4 6.1E-13 2.1E-17 118.2 10.3 125 38-223 1-138 (190)
84 3oes_A GTPase rhebl1; small GT 99.4 1.2E-13 3.9E-18 124.7 5.6 119 37-223 23-145 (201)
85 1x3s_A RAS-related protein RAB 99.4 4.5E-13 1.5E-17 119.6 9.3 118 38-222 15-136 (195)
86 2p5s_A RAS and EF-hand domain 99.4 2.9E-13 9.8E-18 121.9 8.0 118 37-220 27-146 (199)
87 1r2q_A RAS-related protein RAB 99.4 3.5E-13 1.2E-17 117.2 8.3 119 38-222 6-126 (170)
88 1vg8_A RAS-related protein RAB 99.4 3.4E-13 1.2E-17 121.8 8.4 119 37-222 7-132 (207)
89 1ky3_A GTP-binding protein YPT 99.4 3.8E-13 1.3E-17 118.5 8.4 121 37-222 7-133 (182)
90 2fu5_C RAS-related protein RAB 99.4 1.4E-13 4.8E-18 121.9 5.5 120 37-222 7-128 (183)
91 2o52_A RAS-related protein RAB 99.4 1.9E-13 6.5E-18 123.3 6.0 120 37-222 24-145 (200)
92 2hjg_A GTP-binding protein ENG 99.4 3E-13 1E-17 137.0 8.1 129 37-224 174-303 (436)
93 3t5g_A GTP-binding protein RHE 99.4 2.3E-13 7.9E-18 120.2 6.3 120 37-223 5-127 (181)
94 1zd9_A ADP-ribosylation factor 99.4 4.5E-12 1.5E-16 112.9 14.4 115 37-222 21-139 (188)
95 1zj6_A ADP-ribosylation factor 99.4 5.1E-13 1.8E-17 118.9 7.9 114 37-222 15-132 (187)
96 3con_A GTPase NRAS; structural 99.4 1.6E-12 5.5E-17 115.8 11.0 117 39-222 22-141 (190)
97 2hxs_A RAB-26, RAS-related pro 99.4 2.4E-13 8.3E-18 119.5 5.3 121 37-222 5-130 (178)
98 4dcu_A GTP-binding protein ENG 99.4 1.8E-12 6.3E-17 132.0 12.5 130 37-224 194-323 (456)
99 2ged_A SR-beta, signal recogni 99.4 1.1E-12 3.7E-17 117.2 9.2 119 36-223 46-172 (193)
100 1ksh_A ARF-like protein 2; sma 99.4 1E-12 3.5E-17 116.7 8.8 115 37-223 17-135 (186)
101 2x77_A ADP-ribosylation factor 99.4 4.2E-13 1.5E-17 119.5 5.5 114 37-222 21-138 (189)
102 2yc2_C IFT27, small RAB-relate 99.4 3.8E-13 1.3E-17 121.4 5.2 69 140-221 73-146 (208)
103 2gf0_A GTP-binding protein DI- 99.4 2.2E-12 7.4E-17 115.6 9.9 119 37-222 7-129 (199)
104 1h65_A Chloroplast outer envel 99.4 2.5E-12 8.7E-17 121.8 10.8 126 37-223 38-170 (270)
105 2e87_A Hypothetical protein PH 99.4 4.5E-12 1.5E-16 125.0 13.0 128 36-223 165-296 (357)
106 3cpj_B GTP-binding protein YPT 99.3 6.1E-13 2.1E-17 122.1 6.0 120 37-222 12-133 (223)
107 2atv_A RERG, RAS-like estrogen 99.3 2E-12 6.8E-17 116.0 9.2 118 37-222 27-147 (196)
108 3cbq_A GTP-binding protein REM 99.3 3.1E-12 1.1E-16 115.0 10.3 72 140-223 72-146 (195)
109 2wjg_A FEOB, ferrous iron tran 99.3 5.2E-13 1.8E-17 118.7 5.0 119 37-221 6-126 (188)
110 1lnz_A SPO0B-associated GTP-bi 99.3 1.9E-13 6.4E-18 133.6 2.3 126 38-223 158-290 (342)
111 3qq5_A Small GTP-binding prote 99.3 1.7E-12 5.8E-17 130.2 9.3 161 36-261 32-192 (423)
112 1fzq_A ADP-ribosylation factor 99.3 2.7E-11 9.2E-16 107.3 15.8 115 37-223 15-133 (181)
113 2fh5_B SR-beta, signal recogni 99.3 5.3E-12 1.8E-16 114.8 11.1 119 37-223 6-131 (214)
114 1moz_A ARL1, ADP-ribosylation 99.3 7.7E-13 2.6E-17 116.9 5.2 114 37-222 17-134 (183)
115 3t1o_A Gliding protein MGLA; G 99.3 2.2E-12 7.4E-17 115.2 8.0 70 140-222 74-150 (198)
116 2q3h_A RAS homolog gene family 99.3 1.5E-12 5E-17 117.2 7.0 119 36-222 18-139 (201)
117 2b6h_A ADP-ribosylation factor 99.3 1.4E-12 4.7E-17 116.9 6.5 114 37-222 28-145 (192)
118 3def_A T7I23.11 protein; chlor 99.3 1.4E-11 4.8E-16 116.1 13.6 125 37-222 35-166 (262)
119 3l0i_B RAS-related protein RAB 99.3 6.4E-14 2.2E-18 126.2 -2.5 120 37-222 32-153 (199)
120 3llu_A RAS-related GTP-binding 99.3 6.4E-12 2.2E-16 112.8 10.6 121 36-222 18-144 (196)
121 2gco_A H9, RHO-related GTP-bin 99.3 1E-12 3.5E-17 118.5 4.8 118 38-223 25-145 (201)
122 2atx_A Small GTP binding prote 99.3 1.8E-12 6.3E-17 115.9 6.3 118 37-222 17-137 (194)
123 4a9a_A Ribosome-interacting GT 99.3 2.3E-12 8E-17 126.9 7.4 123 36-220 70-195 (376)
124 3reg_A RHO-like small GTPase; 99.3 9.7E-13 3.3E-17 117.8 4.3 118 37-222 22-142 (194)
125 3c5c_A RAS-like protein 12; GD 99.3 2.1E-12 7E-17 115.2 6.4 117 38-222 21-142 (187)
126 2h17_A ADP-ribosylation factor 99.3 9.7E-12 3.3E-16 110.0 10.7 114 37-222 20-137 (181)
127 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.4E-12 4.8E-17 115.4 5.2 117 38-222 5-124 (186)
128 2fv8_A H6, RHO-related GTP-bin 99.3 9.2E-13 3.1E-17 119.4 3.9 116 39-222 26-144 (207)
129 1f6b_A SAR1; gtpases, N-termin 99.3 3.9E-12 1.3E-16 114.5 7.9 113 37-221 24-140 (198)
130 1nrj_B SR-beta, signal recogni 99.3 1.8E-11 6.1E-16 111.6 11.6 115 36-223 10-136 (218)
131 1m2o_B GTP-binding protein SAR 99.3 8.2E-12 2.8E-16 111.6 9.2 113 37-221 22-138 (190)
132 2j1l_A RHO-related GTP-binding 99.3 2.3E-12 7.7E-17 117.6 5.2 118 38-223 34-154 (214)
133 1wxq_A GTP-binding protein; st 99.3 5.7E-13 2E-17 132.9 1.0 38 40-77 2-39 (397)
134 4dkx_A RAS-related protein RAB 99.3 7.5E-12 2.6E-16 114.5 8.3 150 40-255 15-166 (216)
135 3r7w_A Gtpase1, GTP-binding pr 99.3 8.4E-12 2.9E-16 120.5 9.0 75 139-221 51-129 (307)
136 3bwd_D RAC-like GTP-binding pr 99.3 1.1E-12 3.7E-17 115.8 2.0 118 37-222 7-127 (182)
137 2j0v_A RAC-like GTP-binding pr 99.3 2E-12 6.9E-17 117.4 3.7 118 37-222 8-128 (212)
138 1mky_A Probable GTP-binding pr 99.2 1.9E-11 6.7E-16 123.8 11.1 130 37-223 179-308 (439)
139 3th5_A RAS-related C3 botulinu 98.9 6.3E-13 2.2E-17 120.1 0.0 69 140-222 78-149 (204)
140 3q3j_B RHO-related GTP-binding 99.2 5.7E-12 1.9E-16 115.0 6.3 118 37-222 26-146 (214)
141 3gj0_A GTP-binding nuclear pro 99.2 3.8E-12 1.3E-16 116.5 4.9 70 140-223 64-135 (221)
142 3o47_A ADP-ribosylation factor 99.2 8.2E-12 2.8E-16 121.7 7.3 113 40-223 167-282 (329)
143 4gzl_A RAS-related C3 botulinu 99.2 2E-12 6.9E-17 117.0 2.5 119 37-223 29-150 (204)
144 2iwr_A Centaurin gamma 1; ANK 99.2 2.2E-11 7.5E-16 107.1 8.7 26 38-63 7-32 (178)
145 1m7b_A RND3/RHOE small GTP-bin 99.2 8.5E-12 2.9E-16 110.7 6.0 118 37-222 6-126 (184)
146 3dpu_A RAB family protein; roc 99.2 6.1E-11 2.1E-15 123.2 13.2 107 139-260 97-203 (535)
147 3ihw_A Centg3; RAS, centaurin, 99.2 3.3E-11 1.1E-15 107.1 8.8 27 37-63 19-45 (184)
148 1gwn_A RHO-related GTP-binding 99.2 1.5E-11 5.2E-16 111.4 6.4 118 37-222 27-147 (205)
149 3lvq_E ARF-GAP with SH3 domain 99.2 1.3E-10 4.6E-15 119.5 14.3 113 38-222 322-438 (497)
150 2g3y_A GTP-binding protein GEM 99.2 3.1E-11 1.1E-15 110.0 7.9 71 140-222 87-160 (211)
151 3izq_1 HBS1P, elongation facto 99.2 1.1E-10 3.7E-15 122.6 12.5 149 37-222 166-320 (611)
152 3izy_P Translation initiation 99.2 5.8E-12 2E-16 129.6 2.2 117 37-222 3-119 (537)
153 2wkq_A NPH1-1, RAS-related C3 99.1 2.4E-11 8.1E-16 118.0 5.8 118 37-222 154-274 (332)
154 3sjy_A Translation initiation 99.1 1.8E-10 6.1E-15 115.4 11.2 69 140-223 75-145 (403)
155 3j2k_7 ERF3, eukaryotic polype 99.1 2E-10 6.9E-15 116.2 11.5 67 139-221 94-169 (439)
156 1wb1_A Translation elongation 99.1 6.1E-11 2.1E-15 121.3 7.6 67 139-222 72-140 (482)
157 2qag_A Septin-2, protein NEDD5 99.1 1.1E-10 3.6E-15 115.2 9.0 82 140-223 95-190 (361)
158 2www_A Methylmalonic aciduria 99.1 2.4E-10 8.4E-15 112.1 11.3 25 37-61 73-97 (349)
159 3tr5_A RF-3, peptide chain rel 99.1 2.2E-10 7.4E-15 118.2 11.2 138 37-222 12-149 (528)
160 2f9l_A RAB11B, member RAS onco 99.1 1.1E-10 3.8E-15 104.9 7.8 119 38-222 5-125 (199)
161 3p26_A Elongation factor 1 alp 99.1 8.1E-11 2.8E-15 120.7 7.3 82 125-222 97-186 (483)
162 2cjw_A GTP-binding protein GEM 99.1 1.1E-10 3.8E-15 104.4 7.4 69 141-221 57-128 (192)
163 2zej_A Dardarin, leucine-rich 99.1 2.3E-11 8E-16 107.9 2.1 70 139-222 55-127 (184)
164 2ywe_A GTP-binding protein LEP 99.0 3.9E-10 1.3E-14 117.6 9.1 134 37-222 5-140 (600)
165 1zo1_I IF2, translation initia 99.0 1.2E-10 4.1E-15 118.9 4.9 114 37-222 3-118 (501)
166 2h5e_A Peptide chain release f 99.0 9.4E-10 3.2E-14 113.6 11.4 70 139-223 81-150 (529)
167 3cb4_D GTP-binding protein LEP 99.0 3.2E-10 1.1E-14 118.4 7.6 134 37-222 3-138 (599)
168 1g7s_A Translation initiation 99.0 2.6E-10 9.1E-15 119.1 6.9 67 140-221 70-136 (594)
169 1f60_A Elongation factor EEF1A 99.0 1.7E-10 5.9E-15 117.3 5.3 144 37-221 6-159 (458)
170 1oix_A RAS-related protein RAB 99.0 4.4E-10 1.5E-14 100.4 7.1 119 37-222 28-149 (191)
171 2elf_A Protein translation elo 99.0 9.4E-10 3.2E-14 108.7 10.0 63 139-219 59-125 (370)
172 3p32_A Probable GTPase RV1496/ 99.0 3.8E-10 1.3E-14 111.1 7.1 24 37-60 78-101 (355)
173 1zun_B Sulfate adenylate trans 99.0 2.6E-09 8.9E-14 108.0 12.8 68 138-222 102-172 (434)
174 1s0u_A EIF-2-gamma, translatio 99.0 1.9E-09 6.5E-14 108.1 11.7 68 140-223 81-151 (408)
175 1kk1_A EIF2gamma; initiation o 99.0 1.2E-09 4.1E-14 109.6 9.7 68 140-223 83-153 (410)
176 1pui_A ENGB, probable GTP-bind 99.0 1.9E-09 6.5E-14 97.3 10.0 78 141-223 73-153 (210)
177 2c78_A Elongation factor TU-A; 99.0 2.1E-09 7.2E-14 107.7 10.6 69 138-221 73-142 (405)
178 2xex_A Elongation factor G; GT 98.9 6.6E-10 2.2E-14 118.5 6.2 69 139-222 74-142 (693)
179 2qag_B Septin-6, protein NEDD5 98.9 4.3E-09 1.5E-13 105.0 9.5 82 140-223 95-192 (427)
180 1udx_A The GTP-binding protein 98.9 5.7E-09 2E-13 104.3 10.4 125 38-222 157-284 (416)
181 1dar_A EF-G, elongation factor 98.9 3.9E-09 1.3E-13 112.5 9.5 69 139-222 76-144 (691)
182 1jal_A YCHF protein; nucleotid 98.8 2.2E-09 7.5E-14 105.1 6.1 38 39-76 3-40 (363)
183 2qag_C Septin-7; cell cycle, c 98.8 1.9E-08 6.4E-13 100.6 12.4 82 140-223 88-183 (418)
184 3mca_A HBS1, elongation factor 98.8 2.3E-10 7.8E-15 119.8 -1.7 67 139-221 254-329 (592)
185 1d2e_A Elongation factor TU (E 98.8 4.3E-09 1.5E-13 105.1 7.6 68 138-221 64-133 (397)
186 3ec1_A YQEH GTPase; atnos1, at 98.8 4.7E-10 1.6E-14 110.9 0.6 24 38-61 162-185 (369)
187 2rdo_7 EF-G, elongation factor 98.8 2E-08 7E-13 107.1 13.1 68 140-222 82-149 (704)
188 2p67_A LAO/AO transport system 98.8 1E-08 3.4E-13 100.3 9.7 25 37-61 55-79 (341)
189 1jny_A EF-1-alpha, elongation 98.8 4E-09 1.4E-13 106.6 7.0 68 139-222 83-159 (435)
190 2qm8_A GTPase/ATPase; G protei 98.8 2.7E-08 9.3E-13 96.9 12.3 25 37-61 54-78 (337)
191 1n0u_A EF-2, elongation factor 98.8 4.9E-09 1.7E-13 114.1 6.5 67 139-220 97-163 (842)
192 3c5h_A Glucocorticoid receptor 98.8 2.6E-09 9E-14 100.0 3.4 26 36-61 17-51 (255)
193 2qnr_A Septin-2, protein NEDD5 98.8 6.9E-09 2.4E-13 99.6 6.4 137 39-223 19-171 (301)
194 1r5b_A Eukaryotic peptide chai 98.8 9.9E-09 3.4E-13 104.6 7.9 67 139-221 120-195 (467)
195 2ohf_A Protein OLA1, GTP-bindi 98.7 9.4E-09 3.2E-13 101.6 6.7 107 37-187 21-127 (396)
196 3h2y_A GTPase family protein; 98.7 1.8E-09 6.1E-14 106.6 0.9 24 39-62 161-184 (368)
197 2j37_W Signal recognition part 98.7 5.8E-08 2E-12 99.2 11.2 78 139-228 183-261 (504)
198 3r7w_B Gtpase2, GTP-binding pr 98.7 1.2E-07 4.1E-12 91.2 12.2 73 139-223 45-122 (331)
199 2dy1_A Elongation factor G; tr 98.7 2.8E-08 9.5E-13 105.6 7.7 132 37-220 8-139 (665)
200 3vqt_A RF-3, peptide chain rel 98.7 3.9E-08 1.3E-12 101.9 8.5 137 36-222 29-167 (548)
201 3avx_A Elongation factor TS, e 98.7 1.9E-08 6.5E-13 110.4 6.3 68 138-221 357-426 (1289)
202 3sop_A Neuronal-specific septi 98.6 4E-08 1.4E-12 92.7 7.4 82 140-223 60-156 (270)
203 2dby_A GTP-binding protein; GD 98.6 6.2E-08 2.1E-12 95.3 8.3 39 39-77 2-40 (368)
204 1yrb_A ATP(GTP)binding protein 98.6 7.1E-08 2.4E-12 90.2 7.2 27 37-63 13-44 (262)
205 4fn5_A EF-G 1, elongation fact 98.5 6.9E-08 2.4E-12 103.4 7.0 136 37-221 12-151 (709)
206 3j25_A Tetracycline resistance 98.5 4.2E-08 1.4E-12 103.6 3.8 70 138-222 65-134 (638)
207 3dm5_A SRP54, signal recogniti 98.5 1E-06 3.6E-11 88.2 13.2 81 139-230 182-262 (443)
208 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 2.5E-07 8.6E-12 91.5 8.0 41 37-77 19-60 (392)
209 1tq4_A IIGP1, interferon-induc 98.4 1.1E-06 3.8E-11 87.5 11.7 120 37-220 68-188 (413)
210 1f5n_A Interferon-induced guan 98.4 1.1E-06 3.6E-11 91.4 11.2 28 36-63 36-63 (592)
211 1puj_A YLQF, conserved hypothe 98.3 2.6E-07 8.8E-12 87.7 4.6 26 38-63 120-145 (282)
212 3kl4_A SRP54, signal recogniti 98.3 1E-06 3.5E-11 88.2 7.9 82 139-229 179-260 (433)
213 2wsm_A Hydrogenase expression/ 98.3 1.1E-07 3.8E-12 86.4 0.6 25 37-61 29-53 (221)
214 2v3c_C SRP54, signal recogniti 98.2 3.1E-06 1.1E-10 84.9 9.1 79 138-228 179-259 (432)
215 3cnl_A YLQF, putative uncharac 98.1 1.5E-06 5E-11 81.6 3.8 25 39-63 100-124 (262)
216 1j8m_F SRP54, signal recogniti 98.0 4.1E-05 1.4E-09 73.0 11.4 81 139-229 180-261 (297)
217 3q5d_A Atlastin-1; G protein, 98.0 1.1E-05 3.8E-10 80.9 7.7 25 37-61 66-90 (447)
218 2yhs_A FTSY, cell division pro 97.9 8.2E-05 2.8E-09 75.2 12.5 83 140-231 376-462 (503)
219 2xxa_A Signal recognition part 97.9 1.7E-05 5.8E-10 79.6 7.3 79 139-229 183-262 (433)
220 3e70_C DPA, signal recognition 97.9 5.3E-05 1.8E-09 73.2 10.4 80 140-230 212-291 (328)
221 1rj9_A FTSY, signal recognitio 97.8 4.6E-05 1.6E-09 72.8 9.2 85 141-230 186-270 (304)
222 1vma_A Cell division protein F 97.8 3.7E-05 1.3E-09 73.6 8.1 82 139-230 186-272 (306)
223 2hf9_A Probable hydrogenase ni 97.8 1.7E-06 5.8E-11 78.7 -2.0 27 37-63 37-63 (226)
224 1zu4_A FTSY; GTPase, signal re 97.6 0.00041 1.4E-08 66.7 11.7 83 139-230 191-277 (320)
225 2px0_A Flagellar biosynthesis 97.6 0.00074 2.5E-08 64.2 13.0 23 39-61 106-128 (296)
226 2ffh_A Protein (FFH); SRP54, s 97.5 0.00019 6.6E-09 71.5 8.7 80 139-229 180-259 (425)
227 2og2_A Putative signal recogni 97.4 0.00037 1.3E-08 68.0 8.6 85 141-230 242-326 (359)
228 1ls1_A Signal recognition part 97.3 0.00068 2.3E-08 64.4 9.4 81 139-230 180-260 (295)
229 3b9q_A Chloroplast SRP recepto 97.3 0.00036 1.2E-08 66.5 7.2 85 141-230 185-269 (302)
230 1t9h_A YLOQ, probable GTPase E 96.9 0.00039 1.3E-08 66.3 2.9 24 39-62 174-197 (307)
231 4dzz_A Plasmid partitioning pr 96.5 0.011 3.6E-07 52.3 9.5 67 139-220 75-143 (206)
232 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0095 3.3E-07 59.5 9.5 23 37-59 66-88 (457)
233 3ney_A 55 kDa erythrocyte memb 96.1 0.0023 7.9E-08 56.8 2.3 37 39-75 20-58 (197)
234 1ex7_A Guanylate kinase; subst 95.8 0.0033 1.1E-07 55.3 2.2 35 41-75 4-40 (186)
235 1ye8_A Protein THEP1, hypothet 95.8 0.0041 1.4E-07 54.3 2.8 22 40-61 2-23 (178)
236 2rcn_A Probable GTPase ENGC; Y 95.8 0.006 2.1E-07 59.3 4.2 24 39-62 216-239 (358)
237 1u0l_A Probable GTPase ENGC; p 95.8 0.0019 6.3E-08 61.5 0.5 67 141-222 64-130 (301)
238 1kgd_A CASK, peripheral plasma 95.8 0.0039 1.3E-07 54.3 2.5 22 40-61 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 95.7 0.004 1.4E-07 55.2 2.5 22 40-61 6-27 (198)
240 3tau_A Guanylate kinase, GMP k 95.7 0.0057 1.9E-07 54.6 3.2 23 39-61 9-31 (208)
241 1zp6_A Hypothetical protein AT 95.6 0.0056 1.9E-07 53.5 3.0 22 40-61 11-32 (191)
242 1znw_A Guanylate kinase, GMP k 95.6 0.0047 1.6E-07 55.1 2.4 22 40-61 22-43 (207)
243 1u0l_A Probable GTPase ENGC; p 95.5 0.0075 2.6E-07 57.2 3.8 25 39-63 170-194 (301)
244 3tr0_A Guanylate kinase, GMP k 95.5 0.0053 1.8E-07 54.2 2.5 22 40-61 9-30 (205)
245 3tif_A Uncharacterized ABC tra 95.4 0.0071 2.4E-07 55.2 3.1 23 40-62 33-55 (235)
246 3c8u_A Fructokinase; YP_612366 95.4 0.0057 1.9E-07 54.6 2.4 24 38-61 22-45 (208)
247 4g1u_C Hemin import ATP-bindin 95.4 0.0095 3.2E-07 55.5 3.8 23 40-62 39-61 (266)
248 3gfo_A Cobalt import ATP-bindi 95.4 0.0082 2.8E-07 56.2 3.4 23 40-62 36-58 (275)
249 1g6h_A High-affinity branched- 95.4 0.0082 2.8E-07 55.6 3.3 23 40-62 35-57 (257)
250 3a00_A Guanylate kinase, GMP k 95.4 0.0063 2.2E-07 53.2 2.4 22 40-61 3-24 (186)
251 1s96_A Guanylate kinase, GMP k 95.4 0.0064 2.2E-07 54.9 2.5 24 39-62 17-40 (219)
252 2pcj_A ABC transporter, lipopr 95.3 0.0075 2.6E-07 54.6 2.7 23 40-62 32-54 (224)
253 1z6g_A Guanylate kinase; struc 95.3 0.0069 2.4E-07 54.6 2.4 22 40-61 25-46 (218)
254 1sgw_A Putative ABC transporte 95.3 0.0089 3E-07 53.8 3.1 23 40-62 37-59 (214)
255 2onk_A Molybdate/tungstate ABC 95.2 0.0095 3.3E-07 54.6 3.2 24 39-62 25-48 (240)
256 1np6_A Molybdopterin-guanine d 95.2 0.0094 3.2E-07 51.8 2.9 25 37-61 5-29 (174)
257 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0099 3.4E-07 54.8 3.2 22 40-61 31-52 (250)
258 2cbz_A Multidrug resistance-as 95.2 0.011 3.8E-07 54.0 3.4 23 40-62 33-55 (237)
259 4gp7_A Metallophosphoesterase; 95.1 0.01 3.5E-07 51.1 3.0 21 40-60 11-31 (171)
260 1mv5_A LMRA, multidrug resista 95.1 0.011 3.7E-07 54.3 3.3 23 40-62 30-52 (243)
261 1odf_A YGR205W, hypothetical 3 95.1 0.021 7.1E-07 53.9 5.3 24 38-61 31-54 (290)
262 2pze_A Cystic fibrosis transme 95.1 0.011 3.6E-07 53.8 3.1 23 40-62 36-58 (229)
263 2gza_A Type IV secretion syste 95.1 0.01 3.5E-07 57.9 3.2 30 40-71 177-206 (361)
264 1b0u_A Histidine permease; ABC 95.1 0.01 3.6E-07 55.1 3.1 23 40-62 34-56 (262)
265 2pt7_A CAG-ALFA; ATPase, prote 95.0 0.0091 3.1E-07 57.5 2.6 22 40-61 173-194 (330)
266 2ff7_A Alpha-hemolysin translo 95.0 0.012 4.1E-07 54.2 3.3 23 40-62 37-59 (247)
267 2qi9_C Vitamin B12 import ATP- 95.0 0.012 4.1E-07 54.3 3.2 26 40-66 28-53 (249)
268 1cip_A Protein (guanine nucleo 95.0 0.011 3.7E-07 57.5 3.0 69 139-220 192-273 (353)
269 1ji0_A ABC transporter; ATP bi 95.0 0.012 4E-07 54.0 3.1 23 40-62 34-56 (240)
270 1kag_A SKI, shikimate kinase I 95.0 0.0099 3.4E-07 50.9 2.5 22 40-61 6-27 (173)
271 1htw_A HI0065; nucleotide-bind 95.0 0.01 3.4E-07 50.7 2.4 23 40-62 35-57 (158)
272 2olj_A Amino acid ABC transpor 95.0 0.012 4.1E-07 54.7 3.1 23 40-62 52-74 (263)
273 1vpl_A ABC transporter, ATP-bi 95.0 0.012 4.1E-07 54.5 3.1 23 40-62 43-65 (256)
274 2j41_A Guanylate kinase; GMP, 94.9 0.011 3.8E-07 52.2 2.6 24 39-62 7-30 (207)
275 2oap_1 GSPE-2, type II secreti 94.9 0.011 3.6E-07 60.5 2.7 31 40-72 262-292 (511)
276 3asz_A Uridine kinase; cytidin 94.9 0.01 3.5E-07 52.8 2.3 22 40-61 8-29 (211)
277 2ghi_A Transport protein; mult 94.9 0.014 4.8E-07 54.2 3.3 23 40-62 48-70 (260)
278 2nq2_C Hypothetical ABC transp 94.9 0.013 4.5E-07 54.1 3.1 23 40-62 33-55 (253)
279 2zu0_C Probable ATP-dependent 94.9 0.014 4.7E-07 54.4 3.2 23 40-62 48-70 (267)
280 2v9p_A Replication protein E1; 94.8 0.011 3.9E-07 56.1 2.6 22 40-61 128-149 (305)
281 2ixe_A Antigen peptide transpo 94.8 0.015 5E-07 54.4 3.3 23 40-62 47-69 (271)
282 2eyu_A Twitching motility prot 94.8 0.011 3.9E-07 54.8 2.5 22 40-61 27-48 (261)
283 2ihy_A ABC transporter, ATP-bi 94.8 0.015 5.2E-07 54.5 3.3 23 40-62 49-71 (279)
284 2yz2_A Putative ABC transporte 94.8 0.014 4.9E-07 54.3 3.1 23 40-62 35-57 (266)
285 4eun_A Thermoresistant glucoki 94.7 0.012 4.3E-07 51.9 2.5 23 39-61 30-52 (200)
286 2bbw_A Adenylate kinase 4, AK4 94.7 0.017 6E-07 52.8 3.6 26 38-63 27-55 (246)
287 3lw7_A Adenylate kinase relate 94.7 0.017 5.9E-07 49.1 3.3 20 39-58 2-21 (179)
288 2bdt_A BH3686; alpha-beta prot 94.7 0.013 4.3E-07 51.2 2.4 21 40-60 4-24 (189)
289 3b85_A Phosphate starvation-in 94.7 0.011 3.7E-07 52.9 2.0 22 40-61 24-45 (208)
290 1zcb_A G alpha I/13; GTP-bindi 94.7 0.015 5.2E-07 56.7 3.1 69 139-220 200-281 (362)
291 2f1r_A Molybdopterin-guanine d 94.7 0.0072 2.4E-07 52.4 0.7 23 39-61 3-25 (171)
292 2yv5_A YJEQ protein; hydrolase 94.6 0.023 8E-07 53.9 4.0 22 39-61 166-187 (302)
293 2pjz_A Hypothetical protein ST 94.5 0.019 6.6E-07 53.3 3.3 25 40-66 32-56 (263)
294 4fid_A G protein alpha subunit 94.5 0.026 8.9E-07 54.4 4.3 71 138-221 159-242 (340)
295 4a74_A DNA repair and recombin 94.5 0.022 7.6E-07 51.0 3.5 30 40-69 27-56 (231)
296 3nh6_A ATP-binding cassette SU 94.5 0.014 4.9E-07 55.4 2.3 23 40-62 82-104 (306)
297 2i3b_A HCR-ntpase, human cance 94.5 0.016 5.6E-07 50.9 2.5 22 40-61 3-24 (189)
298 1knq_A Gluconate kinase; ALFA/ 94.4 0.016 5.5E-07 49.8 2.4 23 39-61 9-31 (175)
299 2qor_A Guanylate kinase; phosp 94.4 0.02 6.8E-07 50.7 3.1 25 37-61 11-35 (204)
300 3kb2_A SPBC2 prophage-derived 94.4 0.022 7.6E-07 48.4 3.3 21 40-60 3-23 (173)
301 3aez_A Pantothenate kinase; tr 94.4 0.016 5.6E-07 55.2 2.5 22 40-61 92-113 (312)
302 3lnc_A Guanylate kinase, GMP k 94.3 0.014 4.7E-07 52.9 1.8 23 39-61 28-51 (231)
303 2yv5_A YJEQ protein; hydrolase 94.3 0.0088 3E-07 56.8 0.5 56 168-223 71-126 (302)
304 1cke_A CK, MSSA, protein (cyti 94.3 0.02 6.8E-07 51.4 2.8 23 39-61 6-28 (227)
305 1rz3_A Hypothetical protein rb 94.3 0.034 1.2E-06 49.1 4.3 23 39-61 23-45 (201)
306 3kjh_A CO dehydrogenase/acetyl 94.2 0.13 4.4E-06 46.5 8.2 63 139-218 131-194 (254)
307 3jvv_A Twitching mobility prot 94.2 0.018 6.2E-07 55.9 2.4 22 40-61 125-146 (356)
308 2bbs_A Cystic fibrosis transme 94.2 0.022 7.5E-07 53.7 2.9 23 40-62 66-88 (290)
309 3uie_A Adenylyl-sulfate kinase 94.1 0.021 7.1E-07 50.4 2.4 23 39-61 26-48 (200)
310 1jjv_A Dephospho-COA kinase; P 94.0 0.028 9.6E-07 49.7 3.1 22 40-61 4-25 (206)
311 4e22_A Cytidylate kinase; P-lo 94.0 0.021 7.3E-07 52.5 2.3 26 38-63 27-55 (252)
312 1ly1_A Polynucleotide kinase; 94.0 0.029 1E-06 48.1 3.1 21 40-60 4-24 (181)
313 3tui_C Methionine import ATP-b 94.0 0.028 9.6E-07 54.7 3.2 23 40-62 56-78 (366)
314 1xjc_A MOBB protein homolog; s 94.0 0.035 1.2E-06 47.8 3.5 25 37-61 3-27 (169)
315 2jeo_A Uridine-cytidine kinase 93.9 0.023 7.8E-07 52.0 2.4 22 40-61 27-48 (245)
316 3t61_A Gluconokinase; PSI-biol 93.9 0.025 8.6E-07 49.9 2.5 23 38-60 18-40 (202)
317 3kta_A Chromosome segregation 93.9 0.022 7.6E-07 49.2 2.1 23 39-61 27-49 (182)
318 1z47_A CYSA, putative ABC-tran 93.9 0.029 1E-06 54.4 3.1 23 40-62 43-65 (355)
319 2jaq_A Deoxyguanosine kinase; 93.9 0.034 1.2E-06 48.7 3.4 22 40-61 2-23 (205)
320 2if2_A Dephospho-COA kinase; a 93.8 0.024 8.3E-07 50.0 2.3 21 40-60 3-23 (204)
321 1lw7_A Transcriptional regulat 93.8 0.023 8E-07 55.3 2.4 24 39-62 171-194 (365)
322 2qt1_A Nicotinamide riboside k 93.8 0.03 1E-06 49.6 2.9 23 39-61 22-44 (207)
323 2yyz_A Sugar ABC transporter, 93.8 0.031 1.1E-06 54.3 3.1 23 40-62 31-53 (359)
324 3fvq_A Fe(3+) IONS import ATP- 93.8 0.028 9.5E-07 54.6 2.8 23 40-62 32-54 (359)
325 2it1_A 362AA long hypothetical 93.8 0.032 1.1E-06 54.3 3.2 23 40-62 31-53 (362)
326 3rlf_A Maltose/maltodextrin im 93.7 0.033 1.1E-06 54.5 3.2 23 40-62 31-53 (381)
327 1azs_C GS-alpha; complex (lyas 93.7 0.047 1.6E-06 53.8 4.3 69 139-220 216-297 (402)
328 3ohm_A Guanine nucleotide-bind 93.7 0.03 1E-06 53.7 2.8 70 139-221 166-248 (327)
329 1g29_1 MALK, maltose transport 93.6 0.034 1.2E-06 54.4 3.1 23 40-62 31-53 (372)
330 3ec2_A DNA replication protein 93.6 0.025 8.4E-07 48.9 2.0 23 39-61 39-61 (180)
331 2kjq_A DNAA-related protein; s 93.6 0.023 7.7E-07 47.9 1.6 25 37-61 35-59 (149)
332 1v43_A Sugar-binding transport 93.6 0.036 1.2E-06 54.1 3.2 23 40-62 39-61 (372)
333 1p9r_A General secretion pathw 93.5 0.028 9.6E-07 55.8 2.4 22 40-61 169-190 (418)
334 2ewv_A Twitching motility prot 93.5 0.028 9.6E-07 55.0 2.4 22 40-61 138-159 (372)
335 1qhx_A CPT, protein (chloramph 93.5 0.04 1.4E-06 47.3 3.1 22 40-61 5-26 (178)
336 1sq5_A Pantothenate kinase; P- 93.5 0.027 9.3E-07 53.5 2.1 22 40-61 82-103 (308)
337 1nij_A Hypothetical protein YJ 93.4 0.022 7.5E-07 54.5 1.3 26 37-62 3-28 (318)
338 3d31_A Sulfate/molybdate ABC t 93.4 0.03 1E-06 54.2 2.2 23 40-62 28-50 (348)
339 1kht_A Adenylate kinase; phosp 93.3 0.043 1.5E-06 47.5 3.1 22 39-60 4-25 (192)
340 3l82_B F-box only protein 4; T 93.3 0.14 4.9E-06 45.6 6.4 94 165-260 114-218 (227)
341 1f2t_A RAD50 ABC-ATPase; DNA d 93.3 0.042 1.4E-06 46.2 2.8 21 39-59 24-44 (149)
342 1nks_A Adenylate kinase; therm 93.3 0.038 1.3E-06 47.9 2.7 21 40-60 3-23 (194)
343 2ehv_A Hypothetical protein PH 93.3 0.042 1.5E-06 49.8 3.1 22 39-60 31-52 (251)
344 1puj_A YLQF, conserved hypothe 93.2 0.092 3.2E-06 49.2 5.3 52 167-222 14-65 (282)
345 3vaa_A Shikimate kinase, SK; s 93.2 0.052 1.8E-06 47.8 3.4 22 39-60 26-47 (199)
346 2iyv_A Shikimate kinase, SK; t 93.2 0.046 1.6E-06 47.2 3.0 21 39-59 3-23 (184)
347 3trf_A Shikimate kinase, SK; a 93.1 0.053 1.8E-06 46.8 3.3 22 38-59 5-26 (185)
348 1y63_A LMAJ004144AAA protein; 93.1 0.053 1.8E-06 47.1 3.3 24 38-61 10-33 (184)
349 3cm0_A Adenylate kinase; ATP-b 93.1 0.049 1.7E-06 47.1 3.1 20 40-59 6-25 (186)
350 1via_A Shikimate kinase; struc 93.1 0.051 1.7E-06 46.6 3.1 21 40-60 6-26 (175)
351 2vp4_A Deoxynucleoside kinase; 93.0 0.035 1.2E-06 50.2 2.0 22 40-61 22-43 (230)
352 3tqc_A Pantothenate kinase; bi 92.9 0.042 1.4E-06 52.6 2.5 22 40-61 94-115 (321)
353 1oxx_K GLCV, glucose, ABC tran 92.9 0.029 1E-06 54.4 1.5 23 40-62 33-55 (353)
354 3fb4_A Adenylate kinase; psych 92.9 0.056 1.9E-06 48.1 3.2 20 40-59 2-21 (216)
355 3gd7_A Fusion complex of cysti 92.9 0.048 1.6E-06 53.6 3.0 23 40-62 49-71 (390)
356 2rhm_A Putative kinase; P-loop 92.9 0.047 1.6E-06 47.4 2.6 22 39-60 6-27 (193)
357 2plr_A DTMP kinase, probable t 92.9 0.054 1.9E-06 47.7 3.1 22 39-60 5-26 (213)
358 2xtz_A Guanine nucleotide-bind 92.9 0.034 1.2E-06 54.0 1.8 70 139-221 182-264 (354)
359 2ga8_A Hypothetical 39.9 kDa p 92.8 0.11 3.6E-06 50.3 5.2 25 37-61 23-47 (359)
360 4b4t_L 26S protease subunit RP 92.8 0.45 1.5E-05 47.3 9.9 22 40-61 217-238 (437)
361 2v54_A DTMP kinase, thymidylat 92.8 0.063 2.2E-06 47.1 3.4 23 39-61 5-27 (204)
362 2npi_A Protein CLP1; CLP1-PCF1 92.8 0.04 1.4E-06 55.5 2.3 26 37-62 137-162 (460)
363 3iij_A Coilin-interacting nucl 92.7 0.06 2.1E-06 46.3 3.1 23 37-59 10-32 (180)
364 2c95_A Adenylate kinase 1; tra 92.7 0.064 2.2E-06 46.6 3.3 24 37-60 8-31 (196)
365 3dl0_A Adenylate kinase; phosp 92.7 0.062 2.1E-06 47.8 3.2 21 40-60 2-22 (216)
366 2z0h_A DTMP kinase, thymidylat 92.7 0.059 2E-06 46.9 3.0 21 40-60 2-22 (197)
367 1e6c_A Shikimate kinase; phosp 92.6 0.068 2.3E-06 45.5 3.2 22 39-60 3-24 (173)
368 2pez_A Bifunctional 3'-phospho 92.5 0.054 1.8E-06 46.6 2.5 22 40-61 7-28 (179)
369 2x8a_A Nuclear valosin-contain 92.5 0.051 1.7E-06 50.7 2.5 21 41-61 47-67 (274)
370 2cdn_A Adenylate kinase; phosp 92.5 0.086 2.9E-06 46.3 3.8 24 37-60 18-42 (201)
371 2pbr_A DTMP kinase, thymidylat 92.5 0.066 2.3E-06 46.4 3.0 21 40-60 2-22 (195)
372 1tev_A UMP-CMP kinase; ploop, 92.4 0.069 2.4E-06 46.3 3.1 21 40-60 5-25 (196)
373 3h2y_A GTPase family protein; 92.4 0.074 2.5E-06 51.9 3.5 55 165-223 58-112 (368)
374 1ixz_A ATP-dependent metallopr 92.3 0.056 1.9E-06 49.4 2.5 21 41-61 52-72 (254)
375 2pt5_A Shikimate kinase, SK; a 92.3 0.082 2.8E-06 44.8 3.3 21 40-60 2-22 (168)
376 2bwj_A Adenylate kinase 5; pho 92.3 0.072 2.5E-06 46.4 3.0 22 39-60 13-34 (199)
377 3qf7_A RAD50; ABC-ATPase, ATPa 92.3 0.072 2.5E-06 51.9 3.3 23 37-59 22-44 (365)
378 2wwf_A Thymidilate kinase, put 92.2 0.064 2.2E-06 47.3 2.6 23 38-60 10-32 (212)
379 1yqt_A RNAse L inhibitor; ATP- 92.2 0.075 2.6E-06 54.6 3.5 23 40-62 49-71 (538)
380 2yvu_A Probable adenylyl-sulfa 92.2 0.077 2.6E-06 46.0 3.1 23 39-61 14-36 (186)
381 2w0m_A SSO2452; RECA, SSPF, un 92.2 0.06 2E-06 48.1 2.4 22 40-61 25-46 (235)
382 1gtv_A TMK, thymidylate kinase 92.2 0.032 1.1E-06 49.4 0.6 22 40-61 2-23 (214)
383 1nn5_A Similar to deoxythymidy 92.1 0.068 2.3E-06 47.3 2.6 22 39-60 10-31 (215)
384 1yqt_A RNAse L inhibitor; ATP- 92.1 0.1 3.5E-06 53.6 4.3 23 40-62 314-336 (538)
385 3a4m_A L-seryl-tRNA(SEC) kinas 92.0 0.079 2.7E-06 48.9 3.0 23 38-60 4-26 (260)
386 1zd8_A GTP:AMP phosphotransfer 91.9 0.083 2.8E-06 47.5 3.0 23 38-60 7-29 (227)
387 3ozx_A RNAse L inhibitor; ATP 91.9 0.078 2.7E-06 54.5 3.1 23 40-62 27-49 (538)
388 1in4_A RUVB, holliday junction 91.9 0.11 3.7E-06 49.9 4.0 24 38-61 51-74 (334)
389 1cr0_A DNA primase/helicase; R 91.9 0.059 2E-06 50.6 2.1 22 40-61 37-58 (296)
390 3ozx_A RNAse L inhibitor; ATP 91.8 0.1 3.5E-06 53.6 3.9 23 40-62 296-318 (538)
391 4b4t_K 26S protease regulatory 91.8 0.4 1.4E-05 47.5 8.1 25 37-61 204-229 (428)
392 1aky_A Adenylate kinase; ATP:A 91.8 0.1 3.4E-06 46.6 3.4 22 39-60 5-26 (220)
393 3thx_A DNA mismatch repair pro 91.7 0.8 2.7E-05 50.0 11.0 27 40-67 664-698 (934)
394 1gvn_B Zeta; postsegregational 91.7 0.22 7.6E-06 46.6 5.9 21 40-60 35-55 (287)
395 3bk7_A ABC transporter ATP-bin 91.7 0.12 4E-06 53.9 4.3 23 40-62 384-406 (607)
396 1vht_A Dephospho-COA kinase; s 91.6 0.091 3.1E-06 46.8 3.0 22 39-60 5-26 (218)
397 1qf9_A UMP/CMP kinase, protein 91.6 0.083 2.8E-06 45.6 2.6 22 39-60 7-28 (194)
398 2vli_A Antibiotic resistance p 91.6 0.077 2.6E-06 45.6 2.4 22 39-60 6-27 (183)
399 3euj_A Chromosome partition pr 91.6 0.073 2.5E-06 53.7 2.5 24 39-62 30-53 (483)
400 1e4v_A Adenylate kinase; trans 91.6 0.093 3.2E-06 46.6 3.0 21 40-60 2-22 (214)
401 3j16_B RLI1P; ribosome recycli 91.6 0.096 3.3E-06 54.6 3.4 23 40-62 105-127 (608)
402 1iy2_A ATP-dependent metallopr 91.5 0.078 2.7E-06 49.3 2.5 21 41-61 76-96 (278)
403 3b5x_A Lipid A export ATP-bind 91.5 0.093 3.2E-06 54.5 3.2 23 40-62 371-393 (582)
404 3ake_A Cytidylate kinase; CMP 91.5 0.11 3.8E-06 45.5 3.4 22 39-60 3-24 (208)
405 1ukz_A Uridylate kinase; trans 91.5 0.1 3.4E-06 45.8 3.0 22 39-60 16-37 (203)
406 1zak_A Adenylate kinase; ATP:A 91.4 0.09 3.1E-06 47.0 2.7 22 39-60 6-27 (222)
407 3bk7_A ABC transporter ATP-bin 91.4 0.098 3.4E-06 54.5 3.3 23 40-62 119-141 (607)
408 3nwj_A ATSK2; P loop, shikimat 91.4 0.084 2.9E-06 48.5 2.5 23 38-60 48-70 (250)
409 3b60_A Lipid A export ATP-bind 91.4 0.088 3E-06 54.6 2.9 23 40-62 371-393 (582)
410 2p5t_B PEZT; postsegregational 91.4 0.19 6.6E-06 45.9 5.0 23 39-61 33-55 (253)
411 1uf9_A TT1252 protein; P-loop, 91.3 0.097 3.3E-06 45.7 2.7 24 38-61 8-31 (203)
412 2xb4_A Adenylate kinase; ATP-b 91.2 0.12 4.1E-06 46.4 3.3 21 40-60 2-22 (223)
413 3qf4_B Uncharacterized ABC tra 91.2 0.088 3E-06 54.8 2.7 23 40-62 383-405 (598)
414 2yl4_A ATP-binding cassette SU 91.2 0.085 2.9E-06 54.9 2.5 23 40-62 372-394 (595)
415 1zuh_A Shikimate kinase; alpha 91.1 0.12 4.1E-06 43.8 3.1 22 38-59 7-28 (168)
416 2ze6_A Isopentenyl transferase 91.1 0.11 3.8E-06 47.7 3.1 21 40-60 3-23 (253)
417 1svm_A Large T antigen; AAA+ f 91.1 0.087 3E-06 51.5 2.4 22 40-61 171-192 (377)
418 3qks_A DNA double-strand break 91.1 0.12 4.1E-06 45.8 3.1 21 39-59 24-44 (203)
419 4a82_A Cystic fibrosis transme 91.0 0.079 2.7E-06 55.0 2.1 23 40-62 369-391 (578)
420 2cvh_A DNA repair and recombin 91.0 0.098 3.3E-06 46.3 2.4 21 40-60 22-42 (220)
421 1m7g_A Adenylylsulfate kinase; 90.9 0.1 3.4E-06 46.3 2.4 23 39-61 26-48 (211)
422 1tue_A Replication protein E1; 90.8 0.25 8.4E-06 43.9 4.8 21 40-60 60-80 (212)
423 2grj_A Dephospho-COA kinase; T 90.8 0.12 4.3E-06 45.3 2.9 23 38-60 12-34 (192)
424 1n0w_A DNA repair protein RAD5 90.8 0.1 3.5E-06 47.0 2.5 26 40-65 26-51 (243)
425 3qf4_A ABC transporter, ATP-bi 90.8 0.092 3.2E-06 54.6 2.4 23 40-62 371-393 (587)
426 3tlx_A Adenylate kinase 2; str 90.7 0.14 4.7E-06 46.7 3.3 23 38-60 29-51 (243)
427 4b4t_M 26S protease regulatory 90.6 0.82 2.8E-05 45.4 9.0 22 40-61 217-238 (434)
428 1jbk_A CLPB protein; beta barr 90.6 0.16 5.4E-06 43.4 3.4 24 38-61 43-66 (195)
429 3be4_A Adenylate kinase; malar 90.5 0.14 4.7E-06 45.7 3.0 22 39-60 6-27 (217)
430 4eaq_A DTMP kinase, thymidylat 90.5 0.14 4.8E-06 46.3 3.1 23 39-61 27-49 (229)
431 1ak2_A Adenylate kinase isoenz 90.5 0.16 5.4E-06 45.8 3.4 22 39-60 17-38 (233)
432 3k9g_A PF-32 protein; ssgcid, 90.2 1.6 5.5E-05 39.8 10.2 89 139-248 144-233 (267)
433 3j16_B RLI1P; ribosome recycli 90.2 0.15 5E-06 53.2 3.2 25 41-66 381-405 (608)
434 2obl_A ESCN; ATPase, hydrolase 90.1 0.12 4E-06 50.0 2.3 23 40-62 73-95 (347)
435 4b4t_J 26S protease regulatory 90.1 0.92 3.1E-05 44.5 8.6 22 40-61 184-205 (405)
436 3sr0_A Adenylate kinase; phosp 90.0 0.18 6.1E-06 44.8 3.2 22 40-61 2-23 (206)
437 3l2o_B F-box only protein 4; s 89.9 0.63 2.2E-05 43.5 6.9 94 167-262 201-305 (312)
438 1fnn_A CDC6P, cell division co 89.8 0.32 1.1E-05 47.0 5.2 24 38-61 44-67 (389)
439 1t9h_A YLOQ, probable GTPase E 89.7 0.31 1.1E-05 46.1 4.9 55 169-223 79-133 (307)
440 1qhl_A Protein (cell division 89.7 0.038 1.3E-06 50.1 -1.5 22 41-62 30-51 (227)
441 4b4t_I 26S protease regulatory 89.7 1.2 4E-05 44.1 9.0 22 40-61 218-239 (437)
442 3qkt_A DNA double-strand break 89.7 0.16 5.4E-06 48.8 2.8 21 39-59 24-44 (339)
443 3umf_A Adenylate kinase; rossm 89.6 0.21 7.1E-06 44.8 3.4 24 38-61 29-52 (217)
444 3n70_A Transport activator; si 89.6 0.49 1.7E-05 39.0 5.6 22 40-61 26-47 (145)
445 3a8t_A Adenylate isopentenyltr 89.6 0.48 1.7E-05 45.3 6.1 23 39-61 41-63 (339)
446 3r20_A Cytidylate kinase; stru 89.6 0.21 7.1E-06 45.3 3.4 21 39-59 10-30 (233)
447 3ec1_A YQEH GTPase; atnos1, at 89.6 0.1 3.5E-06 50.8 1.5 53 167-223 62-114 (369)
448 1uj2_A Uridine-cytidine kinase 89.6 0.17 6E-06 46.2 2.9 22 39-60 23-44 (252)
449 1q3t_A Cytidylate kinase; nucl 89.5 0.19 6.5E-06 45.4 3.1 24 37-60 15-38 (236)
450 2dpy_A FLII, flagellum-specifi 89.4 0.14 4.8E-06 51.1 2.3 23 40-62 159-181 (438)
451 1sxj_E Activator 1 40 kDa subu 89.4 0.14 4.7E-06 49.2 2.2 25 37-61 35-59 (354)
452 1ltq_A Polynucleotide kinase; 89.4 0.19 6.3E-06 47.1 3.1 21 40-60 4-24 (301)
453 1lv7_A FTSH; alpha/beta domain 89.2 0.16 5.6E-06 46.3 2.5 22 40-61 47-68 (257)
454 1nlf_A Regulatory protein REPA 89.2 0.14 4.9E-06 47.5 2.1 22 39-60 31-52 (279)
455 2f6r_A COA synthase, bifunctio 89.1 0.18 6E-06 47.1 2.6 20 40-59 77-96 (281)
456 2o5v_A DNA replication and rep 88.8 0.18 6.1E-06 48.9 2.5 24 38-61 26-49 (359)
457 3bos_A Putative DNA replicatio 88.7 0.25 8.7E-06 44.0 3.4 24 38-61 52-75 (242)
458 4aby_A DNA repair protein RECN 88.7 0.075 2.6E-06 52.5 -0.3 23 39-61 61-83 (415)
459 1w1w_A Structural maintenance 88.7 0.2 6.7E-06 49.8 2.8 24 39-62 27-50 (430)
460 2iw3_A Elongation factor 3A; a 88.6 0.15 5.3E-06 55.7 2.1 23 40-62 701-723 (986)
461 1sxj_C Activator 1 40 kDa subu 88.5 0.2 6.9E-06 47.9 2.7 25 37-61 45-69 (340)
462 1e69_A Chromosome segregation 88.5 0.22 7.6E-06 47.4 2.9 23 38-60 24-46 (322)
463 2p65_A Hypothetical protein PF 88.4 0.21 7.3E-06 42.4 2.5 24 38-61 43-66 (187)
464 2chg_A Replication factor C sm 88.3 0.28 9.7E-06 42.8 3.3 24 38-61 38-61 (226)
465 4b4t_H 26S protease regulatory 88.2 1.2 4E-05 44.5 7.9 22 40-61 245-266 (467)
466 2ph1_A Nucleotide-binding prot 88.1 1.5 5.2E-05 39.9 8.3 66 139-219 128-194 (262)
467 2ius_A DNA translocase FTSK; n 87.9 0.26 8.8E-06 50.1 3.1 24 37-60 166-189 (512)
468 3exa_A TRNA delta(2)-isopenten 87.9 0.32 1.1E-05 46.1 3.5 23 39-61 4-26 (322)
469 2w58_A DNAI, primosome compone 87.8 0.32 1.1E-05 42.4 3.3 23 39-61 55-77 (202)
470 3auy_A DNA double-strand break 87.6 0.25 8.6E-06 48.0 2.7 21 39-59 26-46 (371)
471 4f4c_A Multidrug resistance pr 87.5 0.19 6.4E-06 57.4 1.9 22 40-61 1107-1128(1321)
472 3thx_B DNA mismatch repair pro 87.4 2.7 9.1E-05 45.8 10.8 21 40-60 675-695 (918)
473 4f4c_A Multidrug resistance pr 87.3 0.26 8.7E-06 56.2 2.9 22 40-61 446-467 (1321)
474 3cr8_A Sulfate adenylyltranfer 87.3 0.16 5.4E-06 52.3 1.1 22 40-61 371-392 (552)
475 1a7j_A Phosphoribulokinase; tr 87.3 0.21 7.1E-06 46.9 1.8 23 38-60 5-27 (290)
476 3pfi_A Holliday junction ATP-d 87.2 0.59 2E-05 44.4 5.1 25 37-61 54-78 (338)
477 3zvl_A Bifunctional polynucleo 87.1 0.3 1E-05 48.3 3.0 22 39-60 259-280 (416)
478 2qmh_A HPR kinase/phosphorylas 86.9 0.36 1.2E-05 42.6 3.0 23 39-61 35-57 (205)
479 1p5z_B DCK, deoxycytidine kina 86.8 0.24 8.1E-06 45.6 1.9 25 37-61 23-47 (263)
480 3co5_A Putative two-component 86.8 0.48 1.7E-05 39.0 3.7 22 40-61 29-50 (143)
481 3g5u_A MCG1178, multidrug resi 86.5 0.31 1.1E-05 55.4 2.9 23 40-62 418-440 (1284)
482 1njg_A DNA polymerase III subu 86.4 0.42 1.4E-05 42.2 3.3 21 40-60 47-67 (250)
483 2ocp_A DGK, deoxyguanosine kin 86.4 0.34 1.2E-05 43.8 2.7 22 40-61 4-25 (241)
484 3cwq_A Para family chromosome 86.3 0.75 2.6E-05 40.6 4.9 66 139-221 67-134 (209)
485 2iw3_A Elongation factor 3A; a 86.2 0.31 1E-05 53.4 2.6 23 40-62 463-485 (986)
486 2dr3_A UPF0273 protein PH0284; 86.0 0.36 1.2E-05 43.3 2.7 21 40-60 25-45 (247)
487 1pzn_A RAD51, DNA repair and r 85.9 0.29 9.8E-06 47.3 2.1 23 40-62 133-155 (349)
488 1d2n_A N-ethylmaleimide-sensit 85.9 0.86 2.9E-05 41.8 5.3 25 37-61 63-87 (272)
489 3cf2_A TER ATPase, transitiona 85.9 2.1 7.2E-05 45.9 8.9 26 36-61 235-261 (806)
490 3b9p_A CG5977-PA, isoform A; A 85.7 0.47 1.6E-05 44.1 3.4 24 38-61 54-77 (297)
491 3syl_A Protein CBBX; photosynt 85.7 1.3 4.5E-05 41.2 6.5 24 38-61 67-90 (309)
492 3d3q_A TRNA delta(2)-isopenten 85.5 0.42 1.4E-05 45.8 3.0 22 40-61 9-30 (340)
493 4edh_A DTMP kinase, thymidylat 85.5 0.46 1.6E-05 42.4 3.0 22 39-60 7-28 (213)
494 4ag6_A VIRB4 ATPase, type IV s 85.3 0.5 1.7E-05 46.1 3.5 26 37-62 34-59 (392)
495 1bif_A 6-phosphofructo-2-kinas 85.3 0.45 1.6E-05 47.8 3.3 22 40-61 41-62 (469)
496 2h92_A Cytidylate kinase; ross 85.2 0.48 1.6E-05 41.9 3.1 21 40-60 5-25 (219)
497 3cnl_A YLQF, putative uncharac 85.2 0.3 1E-05 45.1 1.7 50 167-222 12-61 (262)
498 3q9l_A Septum site-determining 85.1 2 6.7E-05 38.8 7.3 64 139-219 113-185 (260)
499 3ux8_A Excinuclease ABC, A sub 85.1 0.32 1.1E-05 51.3 2.1 20 40-59 350-369 (670)
500 3ea0_A ATPase, para family; al 84.9 1 3.5E-05 40.3 5.2 67 140-221 119-186 (245)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=2.9e-70 Score=579.10 Aligned_cols=424 Identities=45% Similarity=0.740 Sum_probs=385.8
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEe
Q 013508 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (441)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (441)
+|+.|++++|+||+.+..+|.... .++|+|+|||.+|+|||||+|+|+|.++||++.++|||+|+++++.+
T Consensus 25 ~~~~li~~inkl~d~l~~lg~~~~---------i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 25 GMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp CGGGHHHHHHHHHHHHHTTTCCGG---------GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHhcCcccc---------CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 589999999999999999987654 68999999999999999999999999999999999999999999998
Q ss_pred cCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccH
Q 013508 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (441)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~ 162 (441)
.+. +|+++.+..+..+.+++++..++...+....|.+.+|+.+++.+++++|+.++++||||||+.+.+.++++.++
T Consensus 96 ~~~---~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di 172 (772)
T 3zvr_A 96 STT---EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 172 (772)
T ss_dssp CSS---CEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH
T ss_pred CCc---chhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHH
Confidence 764 67778888889999999999999999999999999999999999999999999999999999998777888888
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeE
Q 013508 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (441)
Q Consensus 163 ~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 242 (441)
...+.+++..|+.+..++|++|++++.++..++.+.+++.+++.+.|+|+|+||+|+++++....+++.+...++++||.
T Consensus 173 ~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~ 252 (772)
T 3zvr_A 173 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 252 (772)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCC
Confidence 88889999999998777888888999888888888899999999999999999999998877666777666677788999
Q ss_pred EEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 013508 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (441)
Q Consensus 243 ~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~ 322 (441)
.|+++|+.+..+..++..+...|..||.++|+|..+.++.|+..|++.|+++|+.|++++||++..++...+..++.+++
T Consensus 253 ~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele 332 (772)
T 3zvr_A 253 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVD 332 (772)
T ss_dssp ECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecccccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHH
Confidence 99999998877777888888888899999999988889999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC--------CCCchhHhHHhhhHHHHhccCCccccCchHhHHHHH
Q 013508 323 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGR--------PGGDRIYGVFDNQLPAALRKLPFDRHLSLQNVKKVV 394 (441)
Q Consensus 323 ~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~--------~gg~~i~~~f~~~~~~~~~~~~~~~~~~~~~i~~~i 394 (441)
+++.+++.++..+..++++++++|++.|.++++|.+ .||++|+++|++.|+..+.++++++.+++++|+++|
T Consensus 333 ~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i 412 (772)
T 3zvr_A 333 EYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAI 412 (772)
T ss_dssp HHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCchhhhHHHHHHHH
Confidence 999887777777777889999999999999999998 589999999999999999999999989999999999
Q ss_pred HhhcCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHhhhc
Q 013508 395 SEADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVSFPSF 438 (441)
Q Consensus 395 ~n~~g~~~~~~~p~~~f~~li~~~i~~~~~P~~~c~~~v~~~l~ 438 (441)
+|++|++|++|+|+.+|+.||++||++|++||++|||.||++|.
T Consensus 413 ~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~ 456 (772)
T 3zvr_A 413 KNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELT 456 (772)
T ss_dssp HHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999985
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.2e-56 Score=470.89 Aligned_cols=417 Identities=30% Similarity=0.482 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcc
Q 013508 9 GLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQ 88 (441)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~ 88 (441)
+++ ++.+.+..+|.... .++|+|+|||++|||||||+++|+|. .+|+++|.||+++..+.+.+.+...
T Consensus 26 ~ll-~~id~l~~~gv~~~---------l~lp~iaIvG~nGsGKSTLL~~I~Gl-~~P~~sG~vt~~g~~i~~~~~~~~~- 93 (608)
T 3szr_A 26 PCI-DLIDSLRALGVEQD---------LALPAIAVIGDQSSGKSSVLEALSGV-ALPRGSGIVTRCPLVLKLKKLVNED- 93 (608)
T ss_dssp HHH-HHHHHHHHHSCCSS---------CCCCCEECCCCTTSCHHHHHHHHHSC-C-------CCCSCEEEEEEECSSSS-
T ss_pred HHH-HHHHHHHhCCCCCc---------ccCCeEEEECCCCChHHHHHHHHhCC-CCCCCCCeEEEcCEEEEEecCCccc-
Confidence 344 33445566665443 58999999999999999999999999 5799999999999999887754321
Q ss_pred hhHHhhcC--CCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHH
Q 013508 89 EYAEFLHL--PKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDI 166 (441)
Q Consensus 89 ~~~~~~~~--~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i 166 (441)
.+....+. ....+.++..+.+.+........+.+.+++...+.+.+.++..++++|+|+||+...++.+++......+
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i 173 (608)
T 3szr_A 94 KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKI 173 (608)
T ss_dssp CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHH
T ss_pred cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHH
Confidence 11111111 1234567778888887777777777889999999999999999999999999999988888899999999
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCc--HHHHHcCcccccCCCeEEE
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTN--ALDVLEGRSYRLQHPWVGI 244 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~--~~~~l~~~~~~l~~g~~~v 244 (441)
.+++.+|+.++.++++++++++.|.+++.++++++.+++.|.|||+|+||+|++++++. +.+++.++..++++||++|
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l~~~~~~l~~g~~~v 253 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIV 253 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC--CCSCCSSCEECC
T ss_pred HHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHHhCcccccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999988763 5678888899999999999
Q ss_pred EeCChhhhccCCcHHHHHHHHHhHhccCCCCcccc--cccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 013508 245 VNRSQADINRNIDMIVARRKEREYFATSPDYGHLA--GKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (441)
Q Consensus 245 ~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~--~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~ 322 (441)
+|+|++++....+..++...|..||.+++||+.+. .++|+++|+++|++.|.+||+++||.++.+|...+.+++.+|+
T Consensus 254 ~nr~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~ 333 (608)
T 3szr_A 254 KCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQ 333 (608)
T ss_dssp CCSCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999765 4899999999999999999999999999999999999999999
Q ss_pred HcCCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCC---chhHhHHhhhHHHHhccCCc----cccCchHhHHHHHH
Q 013508 323 HLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGG---DRIYGVFDNQLPAALRKLPF----DRHLSLQNVKKVVS 395 (441)
Q Consensus 323 ~l~~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~g~~~gg---~~i~~~f~~~~~~~~~~~~~----~~~~~~~~i~~~i~ 395 (441)
.||.+++.+..+++.++++++++|++.+.++++|.+..+ .+++..+.+.|..+...+.. ......++|+++++
T Consensus 334 ~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~ 413 (608)
T 3szr_A 334 KYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFEN 413 (608)
T ss_dssp TSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHH
Confidence 999998888888899999999999999999999998533 46777777777766544321 12244688999999
Q ss_pred hhcCCCCcccCChHHHHHHHHHHHhhhhchHHHHHHHHHhhh
Q 013508 396 EADGYQPHLIAPEQGYRRLIEGSLSYFRGPAEASADAVSFPS 437 (441)
Q Consensus 396 n~~g~~~~~~~p~~~f~~li~~~i~~~~~P~~~c~~~v~~~l 437 (441)
|++|+++++|+|+.+|+.||++||++|++|+++|++.|++.+
T Consensus 414 ~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v 455 (608)
T 3szr_A 414 QAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMV 455 (608)
T ss_dssp HCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred HccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998865
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=100.00 E-value=1e-51 Score=410.66 Aligned_cols=331 Identities=73% Similarity=1.175 Sum_probs=294.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec
Q 013508 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (441)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (441)
||.|+|++|+||++++.+|..+. ...++.+...+|+|+|||++|||||||+|+|+|.+++|++.++|||+|+++++.+.
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~-~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~ 79 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGD-SSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI 79 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCS-SCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHHhhCcccc-ccccccccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC
Confidence 78999999999999999997653 45677778899999999999999999999999999999999999999999999998
Q ss_pred CCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHH
Q 013508 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (441)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~ 163 (441)
+.....++.+.+..+..+.++..+..++...+....|.+.+|+.+++.+++.+|...+++||||||+.+....+|+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 80 DDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIV 159 (360)
T ss_dssp SSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHH
T ss_pred CCcccceeeeecCCCcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999988778888899
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEE
Q 013508 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (441)
Q Consensus 164 ~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 243 (441)
..+..++..|+.+++++|+++++++.+..+++++.+++.+++.+.|+|+|+||+|++++++...+.+.+....+++||+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 239 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVG 239 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEE
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEE
Confidence 99999999999999999999998888888889999999999999999999999999988877788888888888999999
Q ss_pred EEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 013508 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDH 323 (441)
Q Consensus 244 v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~ 323 (441)
++++|+.+++...+...+...|..||.++++|+.+..++|+..|+++|++.|.+||+++||.+..++...+.+++++|++
T Consensus 240 v~~~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~ 319 (360)
T 3t34_A 240 VVNRSQADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSR 319 (360)
T ss_dssp ECCCCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC---
T ss_pred EEECChHHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChhHH
Q 013508 324 LGRPIAVDAGAQ 335 (441)
Q Consensus 324 l~~~~~~~~~~~ 335 (441)
||.++..++.++
T Consensus 320 lg~~~~~~~~~~ 331 (360)
T 3t34_A 320 LGKPIAHGTDSR 331 (360)
T ss_dssp ------------
T ss_pred cCCCCCCCHHHH
Confidence 999988765443
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=100.00 E-value=2.2e-48 Score=385.46 Aligned_cols=338 Identities=51% Similarity=0.820 Sum_probs=305.1
Q ss_pred hhhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEe
Q 013508 3 TMESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHK 82 (441)
Q Consensus 3 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~ 82 (441)
+|++|++++|+||+.+..+|.... .++|+|+|||.||||||||+|+|+|.+++|++.++||++|+++++.+
T Consensus 5 ~~~~l~~~~~~l~d~l~~~g~~~~---------~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~ 75 (353)
T 2x2e_A 5 SMEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75 (353)
T ss_dssp -CCSCHHHHHHHHHHHHTTTCGGG---------CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCC---------CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEc
Confidence 589999999999999998886433 57999999999999999999999999999999999999999999988
Q ss_pred cCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccH
Q 013508 83 TEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTI 162 (441)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~ 162 (441)
.+ .+|+++.+.++..+++++.+...++..+.++.|.+.+++...+.+++++|+..+++||||||+.+.+.++|+.++
T Consensus 76 ~~---~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~ 152 (353)
T 2x2e_A 76 AT---TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI 152 (353)
T ss_dssp CS---SCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH
T ss_pred CC---ccceeeeecCCcccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhH
Confidence 64 467788888889999999999999999989988888999999999999999899999999999998877888888
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeE
Q 013508 163 VEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWV 242 (441)
Q Consensus 163 ~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~ 242 (441)
.+.+++++..|+.+++++||+|++++.++.+++++++++.+++.+.|+++|+||+|+++++.++.+++++....+++||+
T Consensus 153 ~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 232 (353)
T 2x2e_A 153 EFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYI 232 (353)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCce
Confidence 88889999999999999999999999888888888899999999999999999999998776666777777777888999
Q ss_pred EEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 013508 243 GIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMD 322 (441)
Q Consensus 243 ~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~ 322 (441)
.++++|+.+.....+.......|.+||+.++.|+..+.++|+..|++.|++.|..++++++|++..++...+..++.+++
T Consensus 233 ~v~~~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~ 312 (353)
T 2x2e_A 233 GVVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVE 312 (353)
T ss_dssp ECCCCCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCChhHH--HHHHHHHHHHHHHHHHH
Q 013508 323 HLGRPIAVDAGAQ--LYTILELCRAFDRIFKE 352 (441)
Q Consensus 323 ~l~~~~~~~~~~~--~~~l~~~~~~f~~~~~~ 352 (441)
.++..+..++..+ +.++++++++|++.|..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 313 EYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9988776655443 48899999999998863
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=100.00 E-value=8.7e-41 Score=325.80 Aligned_cols=310 Identities=51% Similarity=0.812 Sum_probs=242.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecC
Q 013508 5 ESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTE 84 (441)
Q Consensus 5 ~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~ 84 (441)
|.|++++|+|++++..+|.. . .++|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+++++.+.+
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~-~---------~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~ 70 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSD-P---------LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLP 70 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSC-T---------TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECC
T ss_pred CchHHHHHHHHHHHHHcCCC-C---------CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCC
Confidence 46899999999999988865 2 4899999999999999999999999999999999999999999998864
Q ss_pred C-----CcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCC
Q 013508 85 D-----GSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP 159 (441)
Q Consensus 85 ~-----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~ 159 (441)
. ...+|.++.+.++..+.++.++.+++...+.++.|...+++.+++.+++.+|...+++||||||+.+.+..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~ 150 (315)
T 1jwy_B 71 IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQP 150 (315)
T ss_dssp CCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC--------
T ss_pred CcccccchhhhhhhhcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCc
Confidence 3 34678888888888899999999999999988888888999999999999999999999999999875544556
Q ss_pred ccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCC
Q 013508 160 DTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQH 239 (441)
Q Consensus 160 ~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~ 239 (441)
....+.+..++..|+..+|++|+++++++.++..++...+++.+.+.+.|+++|+||+|+.++.....+.+.+....++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~ 230 (315)
T 1jwy_B 151 TDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTL 230 (315)
T ss_dssp -CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTT
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCC
Confidence 66777788999999999999999998777777656666788888888999999999999997766556666654455668
Q ss_pred CeEEEEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 013508 240 PWVGIVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELES 319 (441)
Q Consensus 240 g~~~v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~ 319 (441)
+|+.++++|+.+++.+.........+..||...++|..+..+.|+..|.+.+++.++.++++++|++..++...+.++++
T Consensus 231 ~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~~~l~~~~~ 310 (315)
T 1jwy_B 231 GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVSKMLSDVQG 310 (315)
T ss_dssp CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999998877677766767777889988888888788899999999999999999999999999999999999999
Q ss_pred HHHHc
Q 013508 320 EMDHL 324 (441)
Q Consensus 320 ~l~~l 324 (441)
+|.+|
T Consensus 311 ~l~~~ 315 (315)
T 1jwy_B 311 ELSTY 315 (315)
T ss_dssp -----
T ss_pred HHHhC
Confidence 98764
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=100.00 E-value=4e-39 Score=311.54 Aligned_cols=298 Identities=56% Similarity=0.901 Sum_probs=258.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEec
Q 013508 4 MESLIGLVNRIQRACTMLGDYGGGDNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKT 83 (441)
Q Consensus 4 ~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~ 83 (441)
|++|+++++++++.+..++.... ..+|+|+|+|.+|||||||+|+|+|.+++|++.++||++|+.+++.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~---------~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~ 71 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNAD---------LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNS 71 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTT---------CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCC---------CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecC
Confidence 78999999999999998876433 578999999999999999999999999989999999999999999877
Q ss_pred CCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHH
Q 013508 84 EDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIV 163 (441)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~ 163 (441)
+. +|.++.+..+..+++++.+...+...+..+.|...+++...+.+++++|+..+++||||||+......+++++..
T Consensus 72 ~~---~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~ 148 (299)
T 2aka_B 72 TT---EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE 148 (299)
T ss_dssp SS---CEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHH
T ss_pred Cc---ccchhhhcCCcccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHH
Confidence 54 566667777888899999988888888888888889999999999999988899999999998766555667777
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEE
Q 013508 164 EDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVG 243 (441)
Q Consensus 164 ~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~ 243 (441)
..+..++..|+..++++|++|.+++.++..++...+++.+++.+.|+++|+||+|+.++.....+.+++....+..||..
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 228 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEE
Confidence 77889999999999999988888888887777777899999999999999999999977655566666555566678999
Q ss_pred EEeCChhhhccCCcHHHHHHHHHhHhccCCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 013508 244 IVNRSQADINRNIDMIVARRKEREYFATSPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKS 313 (441)
Q Consensus 244 v~~~s~~~~~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~ 313 (441)
++++|+....+..+.......|.+||+..+.|.....++|+..|.+.|++.+..++++++|++..+++.+
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i~~~ 298 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCChhhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Confidence 9999998766666777777889999999999999999999999999999999999999999999988765
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=5.2e-19 Score=171.29 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=141.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|+++|.+|||||||+|+|+|.++ .+++..|.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~-----~i~s~~~~---------------------------------------- 43 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKV-----SIISPKAG---------------------------------------- 43 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC-----SCCCSSSC----------------------------------------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc-----cccCCCCC----------------------------------------
Confidence 456899999999999999999999987 33333221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+...+..........+++||||||+.+... .....+.+...+..|+..+|+++++++..+ .. ....
T Consensus 44 --------tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~-~~-~~~~ 110 (308)
T 3iev_A 44 --------TTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATE-GW-RPRD 110 (308)
T ss_dssp --------CCCSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTT-BS-CHHH
T ss_pred --------ceeeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCC-CC-Cchh
Confidence 0001111112222256899999999987431 234556667888899999998888876543 33 2223
Q ss_pred HHH-HHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCCh---hhhccCCcHHHHHHHHHhHhccC
Q 013508 197 MKL-AREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQ---ADINRNIDMIVARRKEREYFATS 272 (441)
Q Consensus 197 l~l-~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~---~~~~~~~~~~~~~~~e~~ff~~~ 272 (441)
..+ +..+...+.|+++|+||+|+..........+......+. .+..+++.|+ .+++..+..+.....+.++++..
T Consensus 111 ~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP-ELTEIVPISALKGANLDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp HHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT-TCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred HHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc-CCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence 333 556655678999999999998433333322221111111 2333444454 44444444443333333333322
Q ss_pred CCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHcCCCCCCChhHHHHHHH
Q 013508 273 PDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELE--SEMDHLGRPIAVDAGAQLYTIL 340 (441)
Q Consensus 273 ~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~--~~l~~l~~~~~~~~~~~~~~l~ 340 (441)
...++.+. .....+.+++.++..+.+++|+..+.....+++.+ +...++...+.+.+++|+.++.
T Consensus 190 ~~~td~~~---~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a~i~ve~~~~k~i~i 256 (308)
T 3iev_A 190 DMITDLPL---RLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIII 256 (308)
T ss_dssp TCCBCCCH---HHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHH
T ss_pred ccccCCCH---HHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEEEEEEccCCcceEEE
Confidence 22222222 23567888999999999999997766554444322 1223344445566777777664
No 8
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=2e-18 Score=184.21 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=110.4
Q ss_pred cccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHH--
Q 013508 34 LWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEI-- 111 (441)
Q Consensus 34 ~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i-- 111 (441)
+..+.++|+|+|.+|+|||||+|+|+|.+++|++...||++|+.+.+.........+ .........++..+...+
T Consensus 65 l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~---~~g~~~~~~~~~~i~~~~~i 141 (695)
T 2j69_A 65 LQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHF---NDGKSPQQLDFQNFKYKYTI 141 (695)
T ss_dssp HHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEE---SSSCCCCEEEHHHHHHHSCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEE---cCCCcccccChhhhhhhhcC
Confidence 344678899999999999999999999999999999999999998775432111111 000000111111111100
Q ss_pred -HHHHhhhcCCCCCcCCcceEEEEecCCC---CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 013508 112 -QDETDRVTGKTKQISPIPIHLSIYSPNV---VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (441)
Q Consensus 112 -~~~~~~~~g~~~~~s~~~i~~~i~~~~~---~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a 187 (441)
....................++++.|.. .+++||||||+..... ....+..|+..+|++|+++. +
T Consensus 142 ~~~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD~vL~Vvd-a 210 (695)
T 2j69_A 142 DPAEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCHAILFVMR-A 210 (695)
T ss_dssp CHHHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSSEEEEEEE-T
T ss_pred CHHHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCCEEEEEEe-C
Confidence 0011111222233444566677777754 4899999999976321 14678899999998777765 4
Q ss_pred ccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 188 NQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 188 ~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+......+...+...+...+.|+++|+||+|+...
T Consensus 211 ~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 211 SQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 44443333322334566678899999999999754
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.76 E-value=3.7e-19 Score=171.54 Aligned_cols=235 Identities=18% Similarity=0.200 Sum_probs=138.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..+.|+++|.+|+|||||+|+|+|.++. +++..|..
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~-----ivs~~~~t--------------------------------------- 41 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA-----PISPRPQT--------------------------------------- 41 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-----CCCSSSCC---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee-----eecCCCCc---------------------------------------
Confidence 3467999999999999999999999873 33333310
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+ .+.+. .+...+..+++||||||+.+. ...+.+.+...+..|++.+|+++++++..+ .+.. ..
T Consensus 42 -----T----r~~i~-~i~~~~~~~l~l~DTpG~~~~-----~~~l~~~~~~~~~~~l~~ad~il~VvD~~~-~~~~-~~ 104 (301)
T 1wf3_A 42 -----T----RKRLR-GILTEGRRQIVFVDTPGLHKP-----MDALGEFMDQEVYEALADVNAVVWVVDLRH-PPTP-ED 104 (301)
T ss_dssp -----C----CSCEE-EEEEETTEEEEEEECCCCCCC-----CSHHHHHHHHHHHHHTSSCSEEEEEEETTS-CCCH-HH
T ss_pred -----e----eEEEE-EEEEeCCcEEEEecCccccch-----hhHHHHHHHHHHHHHHhcCCEEEEEEECCC-CCCh-HH
Confidence 0 00011 122234568999999999763 234555567788899999998888876543 3322 22
Q ss_pred HHHHHHhCCC--CCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChh---hhccCCcHHHHHHHHHhHhcc
Q 013508 197 MKLAREVDPT--GERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQA---DINRNIDMIVARRKEREYFAT 271 (441)
Q Consensus 197 l~l~~~~~~~--~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~---~~~~~~~~~~~~~~e~~ff~~ 271 (441)
..+.+.+... +.|+++|+||+|+........+.+.. + .+|..+++.|+. +++..++.+.....+.++++.
T Consensus 105 ~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 105 ELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHE--L---LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYP 179 (301)
T ss_dssp HHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHH--T---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSC
T ss_pred HHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHH--h---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCC
Confidence 2333444433 78999999999998653212222221 1 344556666764 444434333333333333333
Q ss_pred CCCC-cccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHH
Q 013508 272 SPDY-GHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTIL 340 (441)
Q Consensus 272 ~~~~-~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l~ 340 (441)
...+ ++.+.++ ...+.+++.++..+.+++|+........+++.++....+...+.+.+++|+.++.
T Consensus 180 ~~~~~td~~~~~---~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~i~ve~~~~k~iii 246 (301)
T 1wf3_A 180 EDYAKSDQTFGE---WVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVI 246 (301)
T ss_dssp TTCCSBSSCHHH---HHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCCCCHHH---HHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEEEEEeeCCceEEEE
Confidence 3333 3333333 4678889999999999999977655544442111111222334455677776654
No 10
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.66 E-value=4.9e-18 Score=163.82 Aligned_cols=236 Identities=15% Similarity=0.171 Sum_probs=128.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..+.|+++|++|||||||+|+|+|..+.+.+.. .+|+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~--------------------------------------- 47 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRI--------------------------------------- 47 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCE---------------------------------------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeE---------------------------------------
Confidence 346899999999999999999999876222111 1122111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCC-cCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
.| +...+..+++|+||||+. ... ..+...+...+..++...|.++++++... +...
T Consensus 48 ---~g-------------i~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~--~~~~ 104 (301)
T 1ega_A 48 ---VG-------------IHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNKAASSSIGDVELVIFVVEGTR--WTPD 104 (301)
T ss_dssp ---EE-------------EEEETTEEEEEESSSSCCHHHH-----HHHHHHHTCCTTSCCCCEEEEEEEEETTC--CCHH
T ss_pred ---EE-------------EEEECCeeEEEEECcCCCccch-----hhHHHHHHHHHHHHHhcCCEEEEEEeCCC--CCHH
Confidence 01 222234589999999996 311 11111222334566777887777665433 4333
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhh---ccCCcHHHHHHHHHhHhcc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADI---NRNIDMIVARRKEREYFAT 271 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~---~~~~~~~~~~~~e~~ff~~ 271 (441)
...+++.+...+.|.++|+||+|+........+.+.. +...+||..+++.|+... ....+.+.....+.++++.
T Consensus 105 -~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~--l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 105 -DEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQF--LASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp -HHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHH--HHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred -HHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHH--HHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCC
Confidence 3345666656689999999999998632223233221 222345545667776442 2222222222222333333
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCCCCCChhHHHHHHH
Q 013508 272 SPDYGHLAGKMGSEYLAKLLSKHLESVIRSRIPSITSLINKSIEELESEMDHLGRPIAVDAGAQLYTIL 340 (441)
Q Consensus 272 ~~~~~~~~~~~G~~~L~~~L~~~L~~~i~~~lP~~~~~i~~~l~~~~~~l~~l~~~~~~~~~~~~~~l~ 340 (441)
....++.+.+. ...+.+++.+++.+.+++|+........+.+.+...-++...+...+++|+.++.
T Consensus 182 ~~~~~d~~~~~---~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~~i~v~~~~~k~i~i 247 (301)
T 1ega_A 182 EDYITDRSQRF---MASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVI 247 (301)
T ss_dssp TTCCSCCSHHH---HHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHH
T ss_pred ccccCCCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEEEEEEEECCceEEEE
Confidence 22333333333 4667788999999999999865544333321111111122223344566666554
No 11
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.65 E-value=9.1e-17 Score=151.27 Aligned_cols=124 Identities=14% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.|+|+++|.+|+|||||+|+|+|..+.......+|....
T Consensus 1 m~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~----------------------------------------- 39 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKK----------------------------------------- 39 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEE-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEE-----------------------------------------
Confidence 378999999999999999999998742111111221111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCccccccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iil~v~~a~~~~~~~~ 195 (441)
.-.+.. +...+.||||||+.+....++..+.. +.+.+.|+ .++|++|++++..+ ...
T Consensus 40 -------------~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~vi~VvDas~----~~~ 98 (256)
T 3iby_A 40 -------------TGEFLL-GEHLIEITDLPGVYSLVANAEGISQD---EQIAAQSVIDLEYDCIINVIDACH----LER 98 (256)
T ss_dssp -------------EEEEEE-TTEEEEEEECCCCSSCC------CHH---HHHHHHHHHHSCCSEEEEEEEGGG----HHH
T ss_pred -------------EEEEEE-CCeEEEEEeCCCcccccccccCCCHH---HHHHHHHHhhCCCCEEEEEeeCCC----chh
Confidence 001111 23478999999998754221111333 45778888 78998888886654 345
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+.+..++...+.|+++|+||+|+....
T Consensus 99 ~~~l~~~l~~~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 99 HLYLTSQLFELGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHHHHHHHTTSCSCEEEEEECHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEChhcCCcC
Confidence 5667778888899999999999987543
No 12
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.55 E-value=8.6e-15 Score=134.21 Aligned_cols=129 Identities=23% Similarity=0.323 Sum_probs=84.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCC-cccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL-PRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~l-P~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
...|+|+|+|.+|+|||||+|+|+|...+ ..+. ..+|+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~-------------------------------------- 68 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI-------------------------------------- 68 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--------------------------------------
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--------------------------------------
Confidence 35789999999999999999999998732 1111 1112211
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC---CCeEEEEeccCccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK---PNSVILAISPANQD 190 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~---~~~iil~v~~a~~~ 190 (441)
....+.......+.||||||+..... +....+....++..|+.. .|.+|++++ +...
T Consensus 69 ----------------~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d-~~~~ 128 (223)
T 4dhe_A 69 ----------------NYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMD-ARRP 128 (223)
T ss_dssp ----------------EEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSC
T ss_pred ----------------EEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEe-CCCC
Confidence 11123323456899999999876432 334455667788888876 444666654 4433
Q ss_pred cccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 191 IATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 191 ~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+ ......+++.+...+.|+++|+||+|+.+..
T Consensus 129 ~-~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 129 L-TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp C-CHHHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred C-CHHHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 3 3334445566655678999999999998643
No 13
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.55 E-value=1.5e-14 Score=137.13 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=76.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.++|+++|++|+|||||+|+|+|..+.......+|..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~------------------------------------------ 40 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER------------------------------------------ 40 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE------------------------------------------
Confidence 46899999999999999999999864221111122211
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~~ 195 (441)
....+.. ...+.+|||||..+.. +.... +.+.+.|+. .+|++|++++..+. ..
T Consensus 41 ------------~~~~~~~--~~~l~l~DtpG~~~~~----~~~~~---e~v~~~~~~~~~~d~vi~V~D~t~~----e~ 95 (272)
T 3b1v_A 41 ------------KSGLVKK--NKDLEIQDLPGIYSMS----PYSPE---AKVARDYLLSQRADSILNVVDATNL----ER 95 (272)
T ss_dssp ------------EEEECTT--CTTEEEEECCCCSCSS----CSSHH---HHHHHHHHHTTCCSEEEEEEEGGGH----HH
T ss_pred ------------EEEEEec--CCeEEEEECCCcCccC----CCChH---HHHHHHHHhcCCCCEEEEEecCCch----Hh
Confidence 1111222 4589999999998753 12222 456777776 58888877765442 23
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.+.+..++...+.|+++|+||+|+..
T Consensus 96 ~~~~~~~l~~~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 96 NLYLTTQLIETGIPVTIALNMIDVLD 121 (272)
T ss_dssp HHHHHHHHHHTCSCEEEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEEChhhCC
Confidence 34455555556899999999999864
No 14
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.55 E-value=7.1e-15 Score=138.52 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=79.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccc--cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
..++|+|+|.+|||||||+|+|+|...++.+... +|+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~------------------------------------- 63 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSK------------------------------------- 63 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEE-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEE-------------------------------------
Confidence 4578999999999999999999998865544332 3332211
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
........++.||||||+.+... ........+...+..++..+|++|++++... +...
T Consensus 64 ------------------~~~~~~~~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~~~~ 121 (260)
T 2xtp_A 64 ------------------SQGSWGNREIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--YTSQ 121 (260)
T ss_dssp ------------------EEEEETTEEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--CCHH
T ss_pred ------------------EEEEeCCCEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--CCHH
Confidence 01112345799999999987532 1222223344566678889998888876643 3222
Q ss_pred --HHHHHHHHhCCC--CCcEEEEec-cCCCCC
Q 013508 195 --DAMKLAREVDPT--GERTFGVLT-KLDLMD 221 (441)
Q Consensus 195 --~~l~l~~~~~~~--~~r~i~Vlt-K~D~~~ 221 (441)
..++.+..+... +.+.++|+| |+|+..
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 122 DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 233344443211 467888888 999984
No 15
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.53 E-value=3.9e-15 Score=141.57 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=78.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
-+.|+++|.+|+|||||+|+|+|..+ .++. ..+|..+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~---------------------------------------- 41 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERK---------------------------------------- 41 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEE----------------------------------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEE----------------------------------------
Confidence 35899999999999999999999874 3221 11222111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iil~v~~a~~~~~~~ 194 (441)
...+.. ....+.||||||+.+........... +.+.+.|+ ..+|++|++++..+ ..
T Consensus 42 --------------~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~---e~i~~~~~~~~~~d~ii~VvD~~~----~~ 99 (274)
T 3i8s_A 42 --------------EGQFST-TDHQVTLVDLPGTYSLTTISSQTSLD---EQIACHYILSGDADLLINVVDASN----LE 99 (274)
T ss_dssp --------------EEEEEC-SSCEEEEEECCCCSCSCC----CCHH---HHHHHHHHHHTCCSEEEEEEEGGG----HH
T ss_pred --------------EEEEEe-CCCceEEEECcCCCccccccccCCHH---HHHHHHHHhhcCCCEEEEEecCCC----hH
Confidence 111222 23578999999998754221122333 34566665 67998888876654 23
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+.+..++...+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~l~~~~~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 100 RNLYLTLQLLELGIPCIVALNMLDIAEK 127 (274)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEECccchhh
Confidence 3444455555558999999999998754
No 16
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.52 E-value=2.7e-14 Score=131.72 Aligned_cols=137 Identities=15% Similarity=0.220 Sum_probs=79.2
Q ss_pred CCcccccccCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHH
Q 013508 28 DNAFSSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMV 107 (441)
Q Consensus 28 ~~~l~~~~~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 107 (441)
.+.+|.+....++|+|+|.+|+|||||+|+|+|..+.+.....+|+...
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~------------------------------- 67 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLY------------------------------- 67 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEE-------------------------------
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeee-------------------------------
Confidence 3455555567789999999999999999999998762211111122111
Q ss_pred HHHHHHHHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 013508 108 RKEIQDETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (441)
Q Consensus 108 ~~~i~~~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a 187 (441)
+.........+.||||||....... ..... ....+..+...++++|++++..
T Consensus 68 ------------------------~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~--~~~~~~~~~~~~d~~i~v~d~~ 119 (228)
T 2qu8_A 68 ------------------------VGHFDHKLNKYQIIDTPGLLDRAFE--NRNTI--EMTTITALAHINGVILFIIDIS 119 (228)
T ss_dssp ------------------------EEEEEETTEEEEEEECTTTTTSCGG--GCCHH--HHHHHHHHHTSSEEEEEEEETT
T ss_pred ------------------------eeeeecCCCeEEEEECCCCcCcccc--hhhhH--HHHHHHHhhccccEEEEEEecc
Confidence 1111112357899999999653211 01110 0122345667778777777554
Q ss_pred ccc-cccHHHHHHHHHhCCC--CCcEEEEeccCCCCCCc
Q 013508 188 NQD-IATSDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (441)
Q Consensus 188 ~~~-~~~~~~l~l~~~~~~~--~~r~i~VltK~D~~~~~ 223 (441)
+.. +.......++..+... +.|+++|+||+|+.+..
T Consensus 120 ~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~ 158 (228)
T 2qu8_A 120 EQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD 158 (228)
T ss_dssp CTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred cccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence 321 2223344555555543 78999999999998654
No 17
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.52 E-value=1.3e-14 Score=136.77 Aligned_cols=119 Identities=24% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.++|+++|++|+|||||+|+|+|..+.......+|....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~----------------------------------------- 43 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKK----------------------------------------- 43 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEE-----------------------------------------
Confidence 468999999999999999999998752111111111110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCccccccHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iil~v~~a~~~~~~~~ 195 (441)
...+.. ....+.||||||..+.. +.... +.+.+.|+ ..+|++|++++..+ ...
T Consensus 44 -------------~~~~~~-~~~~~~l~DtpG~~~~~----~~~~~---e~v~~~~~~~~~~d~ii~V~D~t~----~~~ 98 (258)
T 3a1s_A 44 -------------EGVFTY-KGYTINLIDLPGTYSLG----YSSID---EKIARDYLLKGDADLVILVADSVN----PEQ 98 (258)
T ss_dssp -------------EEEEEE-TTEEEEEEECCCCSSCC----SSSHH---HHHHHHHHHHSCCSEEEEEEETTS----CHH
T ss_pred -------------EEEEEE-CCeEEEEEECCCcCccC----CCCHH---HHHHHHHHhhcCCCEEEEEeCCCc----hhh
Confidence 011221 23579999999998753 22222 34667776 47888888776544 234
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+.+..++...+.|+++|+||+|+...
T Consensus 99 ~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 99 SLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp HHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 455666666678999999999998643
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.52 E-value=2.9e-14 Score=127.29 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=77.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccc-cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
...++|+|+|.+|+|||||+|+|+|..+.+..... +|+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~--------------------------------------- 61 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSI--------------------------------------- 61 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCE---------------------------------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCe---------------------------------------
Confidence 35689999999999999999999998742211111 11111
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCcccc
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDI 191 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iil~v~~a~~~~ 191 (441)
. ... ...++.++||||+..... +....+....+...|+... +.++++++ +....
T Consensus 62 ---------------~---~~~-~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d-~~~~~ 118 (195)
T 3pqc_A 62 ---------------N---FYL-VNSKYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVD-GRIPP 118 (195)
T ss_dssp ---------------E---EEE-ETTTEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCC
T ss_pred ---------------E---EEE-ECCcEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEec-CCCCC
Confidence 0 111 124789999999765321 2233445567777887765 55555554 33332
Q ss_pred ccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 192 ~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
......+.+.+...+.|+++|+||+|+.+..
T Consensus 119 -~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 119 -QDSDLMMVEWMKSLNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp -CHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred -CHHHHHHHHHHHHcCCCEEEEEEChhcCChH
Confidence 2233334444444578999999999998654
No 19
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.52 E-value=5e-14 Score=122.13 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=86.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|++|+|||||+|++++..+.+.... .+....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~------------------------------------------ 40 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDP-TIEDFY------------------------------------------ 40 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSCCCT-TCCEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCcccCCC-CcceeE------------------------------------------
Confidence 4799999999999999999998775322111 111000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~ 196 (441)
...+.+ ......+.|+||||.... ..+...|+...+.++++++..+... . ....
T Consensus 41 ----------~~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1kao_A 41 ----------RKEIEV-DSSPSVLEILDTAGTEQF-------------ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPM 96 (167)
T ss_dssp ----------EEEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEeCCCHHHHHHHHHH
Confidence 000111 111235899999997542 4567788888998888876544211 0 1112
Q ss_pred H-HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 197 M-KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 197 l-~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
+ .+.+.....+.|+++|+||+|+.+..................+++.+...+..+++..+..+
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 97 RDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp HHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 2 23344445678999999999987543211111110011123456666655555554444333
No 20
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.51 E-value=5.1e-14 Score=126.02 Aligned_cols=158 Identities=13% Similarity=0.191 Sum_probs=92.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 55 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKI--------------------------------------- 55 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE---------------------------------------
Confidence 45789999999999999999999887633222222211110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
..+.+ ......+.|+||||.... ..+...|+..+|++|++++..+... ...
T Consensus 56 -------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 108 (196)
T 3tkl_A 56 -------------RTIEL-DGKTIKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVK 108 (196)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHH
Confidence 00111 111246899999996542 2456788899998888876544211 113
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHH
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 260 (441)
.++..+......+.|+++|+||+|+.+...................|+.+.+.+..+++..+..+.
T Consensus 109 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 174 (196)
T 3tkl_A 109 QWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174 (196)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence 344455555566789999999999986543211111111122234566665555555444444333
No 21
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.51 E-value=2.7e-14 Score=127.89 Aligned_cols=126 Identities=26% Similarity=0.397 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|.+|+|||||+|+|+|..+.+..... |
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~----------------------------------------- 56 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK----P----------------------------------------- 56 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC----C-----------------------------------------
Confidence 5789999999999999999999998753211100 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCC---CeEEEEeccCcccccc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKP---NSVILAISPANQDIAT 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~---~~iil~v~~a~~~~~~ 193 (441)
+. +.......+ ...+.||||||+..... +....+....+...|+... ++++++++. .... .
T Consensus 57 ---~~----t~~~~~~~~----~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~-~ 120 (195)
T 1svi_A 57 ---GK----TQTLNFYII----NDELHFVDVPGYGFAKV---SKSEREAWGRMIETYITTREELKAVVQIVDL-RHAP-S 120 (195)
T ss_dssp ----------CCEEEEEE----TTTEEEEECCCBCCCSS---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEET-TSCC-C
T ss_pred ---Cc----eeeEEEEEE----CCcEEEEECCCCCcccc---CHHHHHHHHHHHHHHHhhhhcCCEEEEEEEC-CCCC-C
Confidence 00 000011111 23799999999865421 2333455667788888766 666666654 3333 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.....+.+.+...+.|+++|+||+|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 121 NDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 233334444444678999999999998754
No 22
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.50 E-value=5.5e-15 Score=140.28 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=75.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccc-cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI-VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~-~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.+.|+++|++|||||||+|+|+|..+ +.+... +|....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~---------------------------------------- 41 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKK---------------------------------------- 41 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEE----------------------------------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEee----------------------------------------
Confidence 56899999999999999999999875 333211 111110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh--cCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV--EKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi--~~~~~iil~v~~a~~~~~~~ 194 (441)
.. .+.. +...+.||||||+.+.. +.... +.+++.|+ .++|++|++++..+. .
T Consensus 42 ------------~~--~~~~-~~~~~~l~DtpG~~~~~----~~~~~---~~~~~~~~~~~~~d~vi~v~D~~~~----~ 95 (271)
T 3k53_A 42 ------------EG--IMEY-REKEFLVVDLPGIYSLT----AHSID---ELIARNFILDGNADVIVDIVDSTCL----M 95 (271)
T ss_dssp ------------EE--EEEE-TTEEEEEEECCCCSCCC----SSCHH---HHHHHHHHHTTCCSEEEEEEEGGGH----H
T ss_pred ------------EE--EEEE-CCceEEEEeCCCccccc----cCCHH---HHHHHHhhhccCCcEEEEEecCCcc----h
Confidence 00 1111 23468999999998753 22333 34566777 578988887765442 2
Q ss_pred HHHHHHHHhCCCC-CcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTG-ERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~-~r~i~VltK~D~~~ 221 (441)
..+.+..++...+ .|+++|+||+|+.+
T Consensus 96 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 96 RNLFLTLELFEMEVKNIILVLNKFDLLK 123 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred hhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence 3444444444455 89999999999764
No 23
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.50 E-value=4.5e-14 Score=132.12 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccc--cccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGI--VTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~--~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
.-.+|++||.+|+|||||+|+|+|..++..+... +|+.+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~------------------------------------ 63 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTG------------------------------------ 63 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEE------------------------------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEE------------------------------------
Confidence 3458999999999999999999999875544332 44433211
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
....+...++||||||+.+..... .+.....+...+..+...++++++++..........
T Consensus 64 -------------------~~~~~~~~i~liDTPG~~~~~~~~-~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~ 123 (247)
T 3lxw_A 64 -------------------SRRWDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQ 123 (247)
T ss_dssp -------------------EEEETTEEEEEEECCSCSSTTHHH-HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHH
T ss_pred -------------------EEEECCcEEEEEECCCCCCCCCCc-HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHH
Confidence 111234579999999997642110 011111122222233478998888776543111122
Q ss_pred HHHHHHHHh-CC--CCCcEEEEeccCCCCC
Q 013508 195 DAMKLAREV-DP--TGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~-~~--~~~r~i~VltK~D~~~ 221 (441)
..++.+..+ .+ .+.++|+|.||.|+.+
T Consensus 124 ~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 124 QAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp HHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred HHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 234444443 22 2578999999999965
No 24
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.50 E-value=1.4e-13 Score=140.53 Aligned_cols=158 Identities=16% Similarity=0.209 Sum_probs=91.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCC-cccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFL-PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~l-P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
-++|+++|.+|+|||||+|+|+|.++. ......+|+.+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~---------------------------------------- 282 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVI---------------------------------------- 282 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSC----------------------------------------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeE----------------------------------------
Confidence 368999999999999999999998651 112222222221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCC-cCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLT-KVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~-~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
... +.+ +...++|+||||+. .......... -.....|+..+|.+|++++..+. . ..+
T Consensus 283 ----------~~~--i~~---~g~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~VvD~s~~-~-s~~ 340 (482)
T 1xzp_A 283 ----------SEE--IVI---RGILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFVLDASSP-L-DEE 340 (482)
T ss_dssp ----------CEE--EEE---TTEEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEEEETTSC-C-CHH
T ss_pred ----------EEE--Eec---CCeEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEEecCCCC-C-CHH
Confidence 111 112 23468999999997 4321110011 13456788899988888765432 2 222
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
..++...+ .+.|+|+|+||+|+.+.. ...++.. .......++.+...+..+++..+..+...
T Consensus 341 ~~~il~~l--~~~piivV~NK~DL~~~~-~~~~~~~--~~~~~~~~i~iSAktg~Gi~eL~~~l~~~ 402 (482)
T 1xzp_A 341 DRKILERI--KNKRYLVVINKVDVVEKI-NEEEIKN--KLGTDRHMVKISALKGEGLEKLEESIYRE 402 (482)
T ss_dssp HHHHHHHH--TTSSEEEEEEECSSCCCC-CHHHHHH--HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEECccccccc-CHHHHHH--HhcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33444545 368999999999997542 2222211 01112356777766666666555555443
No 25
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=1.6e-14 Score=146.50 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=89.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+|.|++||.+|+|||||+|+|+|.+. .++...|.
T Consensus 1 ~~~v~ivG~pnvGKStL~nrl~~~~~-----~~v~~~~g----------------------------------------- 34 (439)
T 1mky_A 1 MATVLIVGRPNVGKSTLFNKLVKKKK-----AIVEDEEG----------------------------------------- 34 (439)
T ss_dssp -CEEEEECCTTSSHHHHHHHHHC---------------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-----ceecCCCC-----------------------------------------
Confidence 48999999999999999999999875 22222221
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
. +.+...-.+.. +...+.||||||+.... .....+.+..++..|++++|.++++++. ..+....+ .
T Consensus 35 ---~----T~d~~~~~~~~-~~~~~~l~DT~G~~~~~----~~~~~~~~~~~~~~~~~~ad~il~V~D~-~~~~~~~d-~ 100 (439)
T 1mky_A 35 ---V----TRDPVQDTVEW-YGKTFKLVDTCGVFDNP----QDIISQKMKEVTLNMIREADLVLFVVDG-KRGITKED-E 100 (439)
T ss_dssp ----------CCSEEEEEE-TTEEEEEEECTTTTSSG----GGCCCHHHHHHHHHHHTTCSEEEEEEET-TTCCCHHH-H
T ss_pred ---C----ccceeeEEEEE-CCeEEEEEECCCccccc----cchHHHHHHHHHHHHHHhCCEEEEEEEC-CCCCCHHH-H
Confidence 0 00111111111 23468999999997532 1223445678889999999988888754 33332222 2
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC-cCcH-HHHHcCcccccCC-CeEEEEeCChhhhccCCcHHHHHHH
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK-GTNA-LDVLEGRSYRLQH-PWVGIVNRSQADINRNIDMIVARRK 264 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~-~~~~-~~~l~~~~~~l~~-g~~~v~~~s~~~~~~~~~~~~~~~~ 264 (441)
.++..+...+.|+++|+||+|+... .... .+. +.++. .++.+.+..+.++.+.++.+.....
T Consensus 101 ~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~-----~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 101 SLADFLRKSTVDTILVANKAENLREFEREVKPEL-----YSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp HHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHH-----GGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHH-----HhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 2333333347899999999998632 1111 111 22333 3455555555555555554444443
No 26
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.49 E-value=9.7e-14 Score=131.91 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=79.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|||.+|+|||||+|+|+|.+.++.+...++..+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~------------------------------------------ 45 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRI------------------------------------------ 45 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC------------------------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCccccc------------------------------------------
Confidence 35799999999999999999999887655432111100
Q ss_pred hcCCCCCcCCcceEEEEecCC-CCCcEEEeCCCCCcCccCC-CCccHHHHHHHHHHHhhcC-------------CCeEEE
Q 013508 118 VTGKTKQISPIPIHLSIYSPN-VVNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSYVEK-------------PNSVIL 182 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~-~~~l~lvDtPGi~~~~~~~-~~~~~~~~i~~~v~~yi~~-------------~~~iil 182 (441)
. ..+..+.....+...+ ...++||||||+....... .-..+...+.+....|+.. .|++++
T Consensus 46 --~--~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~ 121 (274)
T 3t5d_A 46 --K--KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLY 121 (274)
T ss_dssp -------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEE
T ss_pred --C--CceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEE
Confidence 0 0001111111222111 2378999999996542211 1112222233333555553 668888
Q ss_pred EeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 183 ~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.++..++ ......+++.+.. +.|+|+|+||+|+..+.
T Consensus 122 ~i~~~~~~~-~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 122 FIAPSGHGL-KPLDIEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp EECSCCSSC-CHHHHHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred EecCCCCCC-CHHHHHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 887776555 3444557777776 89999999999998543
No 27
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.48 E-value=4.7e-14 Score=124.16 Aligned_cols=117 Identities=17% Similarity=0.332 Sum_probs=77.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|+|+|.+|+|||||+|+|++..+.+......|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHI---------------------------------------- 45 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTC----------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEee----------------------------------------
Confidence 4678999999999999999999999876332222222111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
... .+.+ +...+.|+||||..... .+...++..+|++|++++. .... ...
T Consensus 46 ----------~~~--~~~~---~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~-~~~~-~~~ 95 (178)
T 2lkc_A 46 ----------GAY--QVTV---NDKKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVVAA-DDGV-MPQ 95 (178)
T ss_dssp ----------CCC--EEEE---TTEEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEEET-TCCC-CHH
T ss_pred ----------eEE--EEEe---CCceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEEEC-CCCC-cHH
Confidence 000 1111 22467899999976532 2234667788988887754 3222 345
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++.+..+...+.|+++|+||+|+.+.
T Consensus 96 ~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 96 TVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp HHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 556666666667899999999999864
No 28
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.48 E-value=5.4e-14 Score=121.51 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.|+|+|+|.+|+|||||+|+|++..+...+. ..+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 39 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDL----------------------------------------- 39 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC-----------CC-----------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecc-----------------------------------------
Confidence 3789999999999999999999887521111 1111111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~ 194 (441)
....+.. ....+.|+||||..... +...........++..++++|++++..+. ... .
T Consensus 40 -------------~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~ 98 (161)
T 2dyk_A 40 -------------KEGVVET-DRGRFLLVDTGGLWSGD------KWEKKIQEKVDRALEDAEVVLFAVDGRAE-LTQADY 98 (161)
T ss_dssp -------------EEEEEEE-TTEEEEEEECGGGCSSS------SCCHHHHHHHHHHTTTCSEEEEEEESSSC-CCHHHH
T ss_pred -------------eEEEEEe-CCceEEEEECCCCCCcc------chHHHHHHHHHHHHHhCCEEEEEEECCCc-ccHhHH
Confidence 1111111 22478999999987632 12233456778899999988888765442 222 2
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...++++. .+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 99 EVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHHHHHh---cCCCEEEEEECcccccc
Confidence 22233333 46889999999999865
No 29
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=125.01 Aligned_cols=120 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+. .
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~----------------------------------------- 61 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-E----------------------------------------- 61 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSE-E-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccce-e-----------------------------------------
Confidence 4568999999999999999999998763222111000 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
+. ...+.+ ......+.|+||||.... ..+...|+..++++|++++..+... . ..
T Consensus 62 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~ 117 (193)
T 2oil_A 62 --------FS--TRTVML-GTAAVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVFDLTKHQTYAVVE 117 (193)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred --------EE--EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 000111 122346899999998653 2456778899998888876543211 0 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.++++|+||+|+...
T Consensus 118 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 118 RWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 2333333334457899999999999754
No 30
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.48 E-value=4.1e-14 Score=123.34 Aligned_cols=117 Identities=17% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++.++.+......+....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK----------------------------------------- 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEE-----------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE-----------------------------------------
Confidence 357999999999999999999998763222111111110
Q ss_pred hcCCCCCcCCcceEEEEecC-CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~-~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
.. .+... ....+.|+||||.... ..+...|++.++++|++++..+.. +. ..
T Consensus 42 -----------~~--~~~~~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 95 (170)
T 1g16_A 42 -----------IK--TVDINGKKVKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIK 95 (170)
T ss_dssp -----------EE--EEESSSCEEEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHH
T ss_pred -----------EE--EEEECCEEEEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 11111 1246899999996543 234567788899888877654321 11 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.++..+......+.|+++|+||+|+..
T Consensus 96 ~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 96 QWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 344444455555789999999999943
No 31
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.48 E-value=1.5e-14 Score=147.50 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+-.+|+++|.+|+|||||+|+|+|.+. ..++..|.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-----a~vs~~~g---------------------------------------- 266 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQER-----AIVSHMPG---------------------------------------- 266 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC---------------------------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-----cccCCCCC----------------------------------------
Confidence 345699999999999999999999865 23333221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~ 194 (441)
.+..+... .+.+ +...+.||||||+.+.. .......-.....|+..+|.++++++..+..... .
T Consensus 267 ----tT~d~~~~--~i~~---~g~~l~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~ 332 (476)
T 3gee_A 267 ----TTRDYIEE--CFIH---DKTMFRLTDTAGLREAG-----EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELT 332 (476)
T ss_dssp ----------CE--EEEE---TTEEEEEEC-------------------------CCCSSCSEEEEEEETTTCSSGGGHH
T ss_pred ----ceEEEEEE--EEEE---CCeEEEEEECCCCCcch-----hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhH
Confidence 00111011 1112 23579999999996531 1111111133566788999888887654432111 1
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
....+++.+. +.|+|+|+||+|+....
T Consensus 333 ~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 333 EIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp HHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred HHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 4445666665 68999999999998654
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=1.6e-13 Score=123.80 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=76.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+. ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~---~~~------------------------------------- 46 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI---DFK------------------------------------- 46 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSE---EEE-------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccce---eEE-------------------------------------
Confidence 4568999999999999999999998763221111100 000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
...+.+ ......+.|+||||.... ..+...|+..++++|++++..+... . ..
T Consensus 47 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 100 (203)
T 1zbd_A 47 ------------VKTIYR-NDKRIKLQIWDTAGLERY-------------RTITTAYYRGAMGFILMYDITNEESFNAVQ 100 (203)
T ss_dssp ------------EEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTGGGCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCeEEEEEEEECCCchhh-------------cchHHHhhcCCCEEEEEEECcCHHHHHHHH
Confidence 000011 112347899999998542 4677889999998888876544211 0 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+......+.|+++|+||+|+.+..
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (203)
T 1zbd_A 101 DWSTQIKTYSWDNAQVLLVGNKCDMEDER 129 (203)
T ss_dssp HHHHHHHHHSCSSCEEEEEEECTTCTTSC
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCccc
Confidence 23333444444578999999999997643
No 33
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.48 E-value=5.9e-14 Score=122.05 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|+|..+.+......+...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 39 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD------------------------------------------ 39 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE------------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE------------------------------------------
Confidence 45899999999999999999998765222111111100
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH--
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD-- 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~-- 195 (441)
..+ ........+.++||||.... +.+...|+..+++++++++..+... -..
T Consensus 40 ------------~~~-~~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~ 92 (166)
T 3q72_A 40 ------------RSI-VVDGEEASLMVYDIWEQDGG-------------RWLPGHCMAMGDAYVIVYSVTDKGS-FEKAS 92 (166)
T ss_dssp ------------EEE-EETTEEEEEEEEECC----------------------------CCEEEEEEETTCHHH-HHHHH
T ss_pred ------------EEE-EECCEEEEEEEEECCCCccc-------------hhhhhhhhhhCCEEEEEEECCCHHH-HHHHH
Confidence 000 11122346889999997542 3566778889998888876544321 111
Q ss_pred -HHH-HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 -AMK-LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 -~l~-l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++. +.+.....+.|+++|+||+|+.+..
T Consensus 93 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 93 ELRVQLRRARQTDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp HHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred HHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence 222 2222223578999999999998654
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.48 E-value=3.4e-14 Score=123.99 Aligned_cols=120 Identities=21% Similarity=0.205 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 45 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLT--------------------------------------- 45 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEE---------------------------------------
Confidence 34689999999999999999999887532221111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
..+.+ ......+.++||||.... ..+...|++.++++|++++..+... . ..
T Consensus 46 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 98 (170)
T 1z08_A 46 -------------KKLNI-GGKRVNLAIWDTAGQERF-------------HALGPIYYRDSNGAILVYDITDEDSFQKVK 98 (170)
T ss_dssp -------------EEEES-SSCEEEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCcHhh-------------hhhHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00011 112236889999996432 3455668888998888876544221 0 11
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+.+.|+++|+||+|+.+.
T Consensus 99 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 99 NWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 2233333333456899999999999764
No 35
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=8.2e-14 Score=129.55 Aligned_cols=130 Identities=17% Similarity=0.232 Sum_probs=75.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccc--ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG--IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDE 114 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~--~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 114 (441)
..++|+|+|.+|+|||||+|+|+|..+++.+.. .+|+.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~----------------------------------- 72 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS----------------------------------- 72 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEE-----------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEE-----------------------------------
Confidence 467899999999999999999999987544433 3343332111
Q ss_pred HhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 115 TDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 115 ~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
+ ......++||||||+...... .....+.+...+..+...++++|+++..........
T Consensus 73 -------------------~-~~~~~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~ 130 (239)
T 3lxx_A 73 -------------------S-SWKETELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEH 130 (239)
T ss_dssp -------------------E-EETTEEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHH
T ss_pred -------------------E-EeCCceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHH
Confidence 1 112347899999999865321 223344455666666777898888775432222122
Q ss_pred HHHHHHHH-hC-CCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLARE-VD-PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~-~~-~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+.. +. ....++++|+||+|+....
T Consensus 131 ~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~ 161 (239)
T 3lxx_A 131 KATEKILKMFGERARSFMILIFTRKDDLGDT 161 (239)
T ss_dssp HHHHHHHHHHHHHHGGGEEEEEECGGGC---
T ss_pred HHHHHHHHHhhhhccceEEEEEeCCccCCcc
Confidence 23332221 11 1235899999999987653
No 36
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.47 E-value=1.6e-13 Score=121.53 Aligned_cols=119 Identities=20% Similarity=0.233 Sum_probs=75.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ +.....++......
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~-------------------------------------- 57 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRK-------------------------------------- 57 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEE--------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEE--------------------------------------
Confidence 456899999999999999999998875 22222111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
.+.+ ......+.|+||||.... ..+...|+...+++|++++..+... ...
T Consensus 58 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (187)
T 2a9k_A 58 --------------KVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 109 (187)
T ss_dssp --------------EEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEECCCCccc-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 0011 111236899999997543 4677888899998888876543211 011
Q ss_pred HHHH-HHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMK-LAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~-l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++. +.......+.|+++|+||+|+.+.
T Consensus 110 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 110 DFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2222 333344457899999999999754
No 37
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=9.5e-14 Score=122.42 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~--------------------------------------- 49 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR--------------------------------------- 49 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE---------------------------------------
Confidence 45689999999999999999999987633221111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
...+.+ ......+.++||||.... ..+...|+...+++|++++..+... . ..
T Consensus 50 ------------~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 103 (180)
T 2g6b_A 50 ------------NKVLDV-DGVKVKLQMWDTAGQERF-------------RSVTHAYYRDAHALLLLYDVTNKASFDNIQ 103 (180)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHccCCCEEEEEEECCCHHHHHHHH
Confidence 000011 111246899999996432 3567788999999888876544221 1 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+....+.+.|+++|+||+|+.+..
T Consensus 104 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 132 (180)
T 2g6b_A 104 AWLTEIHEYAQHDVALMLLGNKVDSAHER 132 (180)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECCSTTSCC
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccCccc
Confidence 33444555555678999999999998643
No 38
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.47 E-value=7.8e-14 Score=121.55 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=75.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+.+..........
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------------------------------------ 43 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF------------------------------------------ 43 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE------------------------------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE------------------------------------------
Confidence 45899999999999999999999875322111100000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-~~ 195 (441)
....+.+ ......+.++||||.... ..+...|+..++++|++++..+... .. ..
T Consensus 44 ----------~~~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1z0j_A 44 ----------MTKTVQY-QNELHKFLIWDTAGLERF-------------RALAPMYYRGSAAAIIVYDITKEETFSTLKN 99 (170)
T ss_dssp ----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ----------EEEEEEE-CCeEEEEEEEcCCCchhh-------------hcccHhhCcCCCEEEEEEECcCHHHHHHHHH
Confidence 0000011 112246899999998542 3556778899998888876544321 11 22
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++..+........++++|.||+|+.+..
T Consensus 100 ~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 100 WVRELRQHGPPSIVVAIAGNKCDLTDVR 127 (170)
T ss_dssp HHHHHHHHSCTTSEEEEEEECTTCGGGC
T ss_pred HHHHHHHhCCCCCcEEEEEECCcccccc
Confidence 3344455555578899999999997643
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.47 E-value=5e-14 Score=142.80 Aligned_cols=124 Identities=21% Similarity=0.330 Sum_probs=75.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.|.|++||.+|+|||||+|+|+|..+ ..+...|
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~-----~~v~~~~------------------------------------------ 35 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP------------------------------------------ 35 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEEC-----C------------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-----eeecCCC------------------------------------------
Confidence 48999999999999999999999765 2222222
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
| .+.+.....+ ......+.||||||+... ..+..+.+..++..|++++|.+|++++. ..+.. ....
T Consensus 36 --g----~T~d~~~~~~-~~~~~~~~l~DT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~vvD~-~~~~~-~~d~ 101 (436)
T 2hjg_A 36 --G----VTRDRIYSSA-EWLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVNG-REGVT-AADE 101 (436)
T ss_dssp -----------CEEEEC-TTCSSCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEEEET-TTCSC-HHHH
T ss_pred --C----CccceEEEEE-EECCceEEEEECCCCCCc-----chhHHHHHHHHHHHHHHhCCEEEEEEeC-CCCCC-HHHH
Confidence 0 1111111111 223457999999999643 1235666778889999999988887754 33332 2334
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+++.+...+.|+++|+||+|+...
T Consensus 102 ~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 102 EVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHHHTTCCSCEEEEEECCCC---
T ss_pred HHHHHHHHcCCCEEEEEECccCccc
Confidence 4666677778999999999998754
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.47 E-value=1e-13 Score=120.37 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=72.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+ +.....++.....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 42 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYR---------------------------------------- 42 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEE----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEE----------------------------------------
Confidence 35899999999999999999998875 2222211111110
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~ 195 (441)
..+.+ ......+.|+||||.... ..+...|+..+++++++++..+... . ...
T Consensus 43 ------------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (168)
T 1u8z_A 43 ------------KKVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATAD 96 (168)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---C-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCcchh-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHH
Confidence 00011 112247899999996442 4677888899999888876543221 0 112
Q ss_pred HHH-HHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMK-LAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~-l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++. +.......+.|+++|+||+|+.+.
T Consensus 97 ~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 97 FREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 222 333334457899999999999754
No 41
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.47 E-value=2.4e-13 Score=121.02 Aligned_cols=70 Identities=17% Similarity=0.215 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc-HHHHHHHHHhCC-CCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SDAMKLAREVDP-TGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-~~~l~l~~~~~~-~~~r~i~VltK 216 (441)
..+.|+||||.... ..+...|+..+|++|++++..+... .. ..++..+..... .+.|+++|+||
T Consensus 70 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-------------RSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNK 136 (195)
T ss_dssp EEEEEEEECCSGGG-------------HHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEEC
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 47899999998442 4678899999999888876544221 11 122222333222 57899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 137 ~Dl~~~ 142 (195)
T 3bc1_A 137 SDLEDQ 142 (195)
T ss_dssp TTCGGG
T ss_pred cccccc
Confidence 999753
No 42
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.47 E-value=9.9e-14 Score=121.94 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+ .....+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~---------------------------------------- 52 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEF---------------------------------------- 52 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEE----------------------------------------
Confidence 45789999999999999999999987522 1111100000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
....+.+ ......+.|+||||.... ..+...|++.++++|++++..+... ...
T Consensus 53 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 107 (179)
T 1z0f_A 53 -----------GTRIIEV-SGQKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVYDITRRSTYNHLS 107 (179)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECTTGGGT-------------CHHHHHHHHTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEE-CCeEEEEEEEECCCChHh-------------hhhHHHHhccCCEEEEEEeCcCHHHHHHHH
Confidence 0001111 112246899999996442 3567888999998888876544311 012
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.|+++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 108 SWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2334455555567899999999999754
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.47 E-value=9.4e-14 Score=124.46 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=74.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~----------------------------------------- 63 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDF----------------------------------------- 63 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeE-----------------------------------------
Confidence 446799999999999999999999875221111111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
....+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +. ..
T Consensus 64 -----------~~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~ 118 (192)
T 2il1_A 64 -----------KIKTVEL-RGKKIRLQIWDTAGQERF-------------NSITSAYYRSAKGIILVYDITKKETFDDLP 118 (192)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCcHHH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 0001111 111246899999996432 466788889999888887654421 11 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 119 KWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3345566666678899999999998754
No 44
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=8.6e-14 Score=144.58 Aligned_cols=168 Identities=17% Similarity=0.247 Sum_probs=96.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCC--cccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFL--PRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~l--P~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 113 (441)
...|.|+|+|.+|+|||||+|+|+|.++. +++...+|.+.+.+........ . .+. ..+.+ ...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i--~-------~g~-----~l~~~-~~~ 127 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGT--V-------PGN-----ALVVD-PEK 127 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEE--E-------CCC--------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccc--c-------CCc-----eeeec-Ccc
Confidence 46799999999999999999999999864 4666666655544432211000 0 000 00000 000
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHH--HHHHHHHhhcCCCeEEEEeccCcccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVED--IESMVRSYVEKPNSVILAISPANQDI 191 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~--i~~~v~~yi~~~~~iil~v~~a~~~~ 191 (441)
....+...+..+....+++.+.++...+++||||||+.+... ...... ...++..|+..+|++|+++++.+.+.
T Consensus 128 ~~~~L~~~g~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~----~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~ 203 (550)
T 2qpt_A 128 PFRKLNPFGNTFLNRFMCAQLPNQVLESISIIDTPGILSGAK----QRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI 203 (550)
T ss_dssp ----------CCCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC
T ss_pred cHHHHhhhcccccccceEEeccccccCCEEEEECcCCCCcch----hHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC
Confidence 000011112234444455444333224799999999976321 111110 24677888899998888886644333
Q ss_pred ccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 192 ATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 192 ~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
......+++.+...+.++++|+||+|++++.
T Consensus 204 -~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 204 -SDEFSEAIGALRGHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp -CHHHHHHHHHTTTCGGGEEEEEECGGGSCHH
T ss_pred -CHHHHHHHHHHHhcCCCEEEEEECCCccCHH
Confidence 3344556777777788999999999998653
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.47 E-value=9.2e-14 Score=123.29 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--------------------------------------- 49 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS--------------------------------------- 49 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEE---------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE---------------------------------------
Confidence 45789999999999999999999887632222111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
..+.+ ......+.|+||||.... ..+...|+..++++|++++..+... . ..
T Consensus 50 -------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 102 (186)
T 2bme_A 50 -------------KIINV-GGKYVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNALT 102 (186)
T ss_dssp -------------EEEEE-TTEEEEEEEEEECCSGGG-------------HHHHHTTSTTCSEEEEEEETTCHHHHHTHH
T ss_pred -------------EEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 00011 111246899999996442 4678889999999888886544211 0 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.|+++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 103 NWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2333445555567899999999999643
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.5e-14 Score=126.09 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=71.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 48 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKI-------------------------------------- 48 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEE--------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEE--------------------------------------
Confidence 356899999999999999999999987632221111111100
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
..+.+ ......+.|+||||.... ..+...|+..+|++|++++..+.. .-..
T Consensus 49 --------------~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~ 99 (181)
T 3tw8_B 49 --------------RTVEI-NGEKVKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSAE-SFVN 99 (181)
T ss_dssp --------------EEEEE-TTEEEEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCHH-HHHH
T ss_pred --------------EEEEE-CCEEEEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCHH-HHHH
Confidence 00111 111246899999996543 234556788899888887654421 1112
Q ss_pred ---HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 ---AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ---~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..+.... .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 100 VKRWLHEINQNC-DDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHhC-CCCCEEEEEECCCCchh
Confidence 222222222 36899999999998754
No 47
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.46 E-value=1e-13 Score=125.89 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=89.7
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 58 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK--------------------------------------- 58 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEE---------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE---------------------------------------
Confidence 35679999999999999999999988763322222111110
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-c
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-T 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~ 193 (441)
...+.+ ......+.||||||.... ..+...|+..++++|++++..+.. +. .
T Consensus 59 -------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 111 (213)
T 3cph_A 59 -------------IKTVDI-NGKKVKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNI 111 (213)
T ss_dssp -------------EEEEEE-TTEEEEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEE-CCEEEEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHH
Confidence 001111 111246899999997543 234667888999888887654321 11 1
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHHH
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVARR 263 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~~ 263 (441)
..++..+....+.+.|+++|+||+|+........+... ........|+.+.+....++...+..+....
T Consensus 112 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 112 KQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEA-LAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp HHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHH-HHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHH-HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 23444455555557899999999999433221111100 0111223455555554444444444444333
No 48
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.46 E-value=2.3e-13 Score=122.77 Aligned_cols=119 Identities=20% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|.+|+|||||+|+|++..+ +......+.....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 52 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYR--------------------------------------- 52 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEE---------------------------------------
Confidence 457899999999999999999998875 2222211111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
..+.+ ......+.|+||||.... ..+...|+...+++|++++..+... . ..
T Consensus 53 -------------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 105 (206)
T 2bov_A 53 -------------KKVVL-DGEEVQIDILDTAGQEDY-------------AAIRDNYFRSGEGFLCVFSITEMESFAATA 105 (206)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCTTCC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEcCCChhhh-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 00011 111247899999997543 4667788889998888876544211 0 11
Q ss_pred HHHH-HHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMK-LAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~-l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++. +.......+.|+++|+||+|+.+.
T Consensus 106 ~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 106 DFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 2222 233333457899999999999754
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.46 E-value=5.2e-14 Score=126.07 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+.... |...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~---------------------------------------- 59 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP--TIGAS---------------------------------------- 59 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC--CSSEE----------------------------------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC--Cccee----------------------------------------
Confidence 456899999999999999999998875211110 00000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
.....+.+ ......+.|+||||.... ..+...|+..++++|++++..+... ...
T Consensus 60 ----------~~~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilV~d~~~~~s~~~~~ 115 (192)
T 2fg5_A 60 ----------FMTKTVPC-GNELHKFLIWDTAGQERF-------------HSLAPMYYRGSAAAVIVYDITKQDSFYTLK 115 (192)
T ss_dssp ----------EEEEEEEC-SSSEEEEEEEEECCSGGG-------------GGGTHHHHTTCSEEEEEEETTCTHHHHHHH
T ss_pred ----------EEEEEEEe-CCEEEEEEEEcCCCchhh-------------HhhhHHhhccCCEEEEEEeCCCHHHHHHHH
Confidence 00000011 112347899999996442 3456778889998888876544321 012
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+....+.+.|+++|+||+|+.+.
T Consensus 116 ~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 116 KWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 2334444555567899999999999753
No 50
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.45 E-value=1.1e-13 Score=120.26 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=72.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+ +......+.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~----------------------------------------- 41 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYR----------------------------------------- 41 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEE-----------------------------------------
Confidence 4799999999999999999998765 2221111110000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~~ 196 (441)
..+.+ ......+.|+||||.... ..+...|+..+++++++++..+.. +.. ..+
T Consensus 42 -----------~~~~~-~~~~~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 96 (167)
T 1c1y_A 42 -----------KQVEV-DCQQCMLEILDTAGTEQF-------------TAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96 (167)
T ss_dssp -----------EEEES-SSCEEEEEEEEECSSCSS-------------TTHHHHHHHHCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00001 112346899999997553 245667888899888887654421 111 222
Q ss_pred HH-HHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MK-LAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~-l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+. +.+.....+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 97 REQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhhCcCCCcEEEEEECcccccc
Confidence 22 333334567899999999999754
No 51
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.45 E-value=4.4e-14 Score=143.49 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=78.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-.+|+++|.+|+|||||+|+|+|.++ .+++..|. .+.++.
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~-----a~v~~~~g---------tT~d~~-------------------------- 263 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDR-----AIVTDLPG---------TTRDVV-------------------------- 263 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHB-----SCCSCCTT---------CCHHHH--------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCc-----ccccCCCC---------eeEEEE--------------------------
Confidence 35699999999999999999999765 22222220 000000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
... +.+ +..++.||||||+.+.. ......--.....++..+|.++++++..+ .+ .....
T Consensus 264 ---------~~~--i~~---~g~~v~liDT~G~~~~~-----~~ve~~gi~~~~~~~~~aD~vl~VvD~s~-~~-~~~~~ 322 (462)
T 3geh_A 264 ---------ESQ--LVV---GGIPVQVLDTAGIRETS-----DQVEKIGVERSRQAANTADLVLLTIDAAT-GW-TTGDQ 322 (462)
T ss_dssp ---------HHE--EEE---TTEEEEECC-------------------------CCCCSCSEEEEEEETTT-CS-CHHHH
T ss_pred ---------EEE--EEE---CCEEEEEEECCccccch-----hHHHHHHHHHHhhhhhcCCEEEEEeccCC-CC-CHHHH
Confidence 000 111 23468999999996531 11111111234567888998888776543 33 23334
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHH
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMI 259 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~ 259 (441)
.+.+.+.. .|+++|+||+|+...... . ....+....+++.+...+..+++..+..+
T Consensus 323 ~i~~~l~~--~piivV~NK~Dl~~~~~~--~--~~~~~~~~~~~i~iSAktg~Gi~eL~~~i 378 (462)
T 3geh_A 323 EIYEQVKH--RPLILVMNKIDLVEKQLI--T--SLEYPENITQIVHTAAAQKQGIDSLETAI 378 (462)
T ss_dssp HHHHHHTT--SCEEEEEECTTSSCGGGS--T--TCCCCTTCCCEEEEBTTTTBSHHHHHHHH
T ss_pred HHHHhccC--CcEEEEEECCCCCcchhh--H--HHHHhccCCcEEEEECCCCCCHHHHHHHH
Confidence 45555543 699999999999865421 1 11112223455666655555554444333
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=120.41 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|++|+|||||+|+|+|..+.+....+.+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~-------------------------------------------- 38 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE-------------------------------------------- 38 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSS--------------------------------------------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCcccc--------------------------------------------
Confidence 346899999999999999999999875221111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~ 194 (441)
......+.+. .....+.++||||..... ...+...|+..+++++++++..+.. +.. .
T Consensus 39 ---------~~~~~~~~~~-~~~~~~~~~D~~g~~~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (175)
T 2nzj_A 39 ---------DVYERTLTVD-GEDTTLVVVDTWEAEKLD-----------KSWSQESCLQGGSAYVIVYSIADRGSFESAS 97 (175)
T ss_dssp ---------SEEEEEEEET-TEEEEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHH
T ss_pred ---------ceeEEEEEEC-CEEEEEEEEecCCCCccc-----------hhhhHHhhcccCCEEEEEEECCCHHHHHHHH
Confidence 0000011111 112368899999985420 1245667888899888887654321 111 1
Q ss_pred HHHHHHHHh-CCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREV-DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~-~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+... ...+.|+++|+||+|+.+..
T Consensus 98 ~~~~~l~~~~~~~~~piilv~NK~Dl~~~~ 127 (175)
T 2nzj_A 98 ELRIQLRRTHQADHVPIILVGNKADLARCR 127 (175)
T ss_dssp HHHHHHHHCC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHHHhhccCCCCEEEEEEChhhcccc
Confidence 122222222 23478999999999997643
No 53
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.45 E-value=8.4e-14 Score=129.98 Aligned_cols=107 Identities=8% Similarity=0.151 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCC---CCCchhHhHHhhhHHHHhccCCccccCc----hHhHHHHHHhhcCCCCcc
Q 013508 332 AGAQLYTILELCRAFDRIFKEHLDGGR---PGGDRIYGVFDNQLPAALRKLPFDRHLS----LQNVKKVVSEADGYQPHL 404 (441)
Q Consensus 332 ~~~~~~~l~~~~~~f~~~~~~~i~g~~---~gg~~i~~~f~~~~~~~~~~~~~~~~~~----~~~i~~~i~n~~g~~~~~ 404 (441)
..++..++...++.|.+.+.+.+.|.. .|+.|++..+.+.|.+|...++...... .++|.....+++|++++.
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 456778999999999999999999997 3567999999999999977654322222 356777778999999999
Q ss_pred cCChHHHHHHHHHHHhhhhchHHHHHHHHHhhhc
Q 013508 405 IAPEQGYRRLIEGSLSYFRGPAEASADAVSFPSF 438 (441)
Q Consensus 405 ~~p~~~f~~li~~~i~~~~~P~~~c~~~v~~~l~ 438 (441)
|+|+.||+.||++||++|++||++|++.|+++|-
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~ 116 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVR 116 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988763
No 54
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.45 E-value=1.2e-13 Score=123.26 Aligned_cols=120 Identities=20% Similarity=0.195 Sum_probs=74.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 59 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF----------------------------------------- 59 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE-----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE-----------------------------------------
Confidence 346899999999999999999999876322111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
....+.+ ......+.|+||||.... ..+...|+..+|++|++++..+.. +. ..
T Consensus 60 -----------~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 114 (189)
T 2gf9_A 60 -----------KVKTVYR-HDKRIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQ 114 (189)
T ss_dssp -----------EEEEEEE-TTEEEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHH
Confidence 0000111 112347899999997543 134567888999888887654421 11 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.++++|+||+|+.+.
T Consensus 115 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 115 DWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 2333444444457899999999999754
No 55
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=1.5e-13 Score=124.32 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 64 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM---------------------------------------- 64 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEE----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEE----------------------------------------
Confidence 4578999999999999999999987652211111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
...+.+. .....+.|+||||.... ..+...|++.++++|++++..+... . ..
T Consensus 65 ------------~~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~ 118 (201)
T 2ew1_A 65 ------------IKTVEIN-GEKVKLQIWDTAGQERF-------------RSITQSYYRSANALILTYDITCEESFRCLP 118 (201)
T ss_dssp ------------EEEEEET-TEEEEEEEEEECCSGGG-------------HHHHGGGSTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEEC-CEEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 0001111 11246899999996432 4677889999999888876544221 0 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+....+.+.++++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 119 EWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3444555555667899999999999754
No 56
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.45 E-value=2.2e-13 Score=122.22 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCC-CCCcEEEEeccCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP-TGERTFGVLTKLD 218 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~-~~~r~i~VltK~D 218 (441)
..+.||||||.... ..+...|+..+|++|++++..+.. .......++..+.. .+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVFDISNSN-TLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEEETTCHH-HHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHH-HHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 47899999996543 245778889999888877654421 11222222222221 2489999999999
No 57
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.45 E-value=1.7e-13 Score=139.62 Aligned_cols=126 Identities=21% Similarity=0.298 Sum_probs=78.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
-..|.|++||.+|+|||||+|+|+|..+ +.+...|
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-----~~v~~~~---------------------------------------- 55 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-----SIVEDTP---------------------------------------- 55 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEE-----C----------------------------------------------
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC-----cccCCCC----------------------------------------
Confidence 3579999999999999999999999765 2222111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+.+.+.....+. .....+.+|||||+... .....+.+..++..|+..+|.+|++++. ...+ +..
T Consensus 56 --------g~t~~~~~~~~~-~~~~~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~VvD~-~~~~-~~~ 119 (456)
T 4dcu_A 56 --------GVTRDRIYSSAE-WLNYDFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFMVNG-REGV-TAA 119 (456)
T ss_dssp -------------CEEEECT-TCSSCCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEEEES-SSCS-CHH
T ss_pred --------CcceeEEEEEEE-ECCceEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEEEeC-CCCC-ChH
Confidence 111111111122 23458999999999742 2345667788899999999988887754 4334 334
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...+++.+...+.++++|+||+|+.+.
T Consensus 120 d~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 120 DEEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHHHTTCCSCEEEEEECC-----
T ss_pred HHHHHHHHHHcCCCEEEEEECccchhh
Confidence 445677777789999999999998754
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.45 E-value=3e-13 Score=120.00 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=71.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+.+ .....+......
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~---------------------------------------- 43 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHFVD-EYDPTIEDSYRK---------------------------------------- 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCC-CCCTTCCEEEEE----------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCchheEEE----------------------------------------
Confidence 479999999999999999999887522 222211111100
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~ 196 (441)
.+ ........+.|+||||.... ..+...|+..+++++++++..+... ....+
T Consensus 44 ------------~~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~ 97 (189)
T 4dsu_A 44 ------------QV-VIDGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97 (189)
T ss_dssp ------------EE-EETTEEEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred ------------EE-EECCcEEEEEEEECCCcHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHH
Confidence 00 11112235788999997543 2456678888998888876544211 01122
Q ss_pred HH-HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MK-LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~-l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+. +.......+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 98 REQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp HHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred HHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 22 2233344578999999999998543
No 59
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.45 E-value=1.4e-13 Score=120.14 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+... ..|...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~---~~t~~~----------------------------------------- 41 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT---IPTIGF----------------------------------------- 41 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC---CCCSSE-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc---CCcCcc-----------------------------------------
Confidence 457899999999999999999998765210 111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.. -. +.. +...+.++||||.... ..+...|++.+|++|++++..+..- -...
T Consensus 42 ---------~~--~~--~~~-~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s-~~~~ 93 (171)
T 1upt_A 42 ---------NV--ET--VTY-KNLKFQVWDLGGLTSI-------------RPYWRCYYSNTDAVIYVVDSCDRDR-IGIS 93 (171)
T ss_dssp ---------EE--EE--EEE-TTEEEEEEEECCCGGG-------------GGGGGGGCTTCSEEEEEEETTCCTT-HHHH
T ss_pred ---------ce--EE--EEE-CCEEEEEEECCCChhh-------------hHHHHHHhccCCEEEEEEECCCHHH-HHHH
Confidence 00 01 111 2457899999998543 3456778889998888876544321 1222
Q ss_pred HHHHHH-hC---CCCCcEEEEeccCCCCCCc
Q 013508 197 MKLARE-VD---PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~-~~---~~~~r~i~VltK~D~~~~~ 223 (441)
...... +. ..+.|+++|+||+|+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 94 KSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 222222 22 2578999999999998653
No 60
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.44 E-value=2.9e-13 Score=118.90 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 45 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFL---------------------------------------- 45 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEE----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE----------------------------------------
Confidence 4568999999999999999999988752211111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~ 194 (441)
...+.+ ......+.|+||||.... ..+...|++.+++++++++..+.. +.. .
T Consensus 46 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 99 (177)
T 1wms_A 46 ------------NKDLEV-DGHFVTMQIWDTAGQERF-------------RSLRTPFYRGSDCCLLTFSVDDSQSFQNLS 99 (177)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCCCGGG-------------HHHHGGGGTTCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCchhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 001111 111246899999996432 467778899999888887654321 111 1
Q ss_pred HHHHHHHHhC----CCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVD----PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~----~~~~r~i~VltK~D~~~~ 222 (441)
.++..+.... ..+.|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 100 NWKKEFIYYADVKEPESFPFVILGNKIDISER 131 (177)
T ss_dssp HHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHccccccCCCcEEEEEECCccccc
Confidence 2222222221 256899999999999743
No 61
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.44 E-value=7.5e-13 Score=130.59 Aligned_cols=128 Identities=23% Similarity=0.347 Sum_probs=77.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...|.|+++|.+|||||||+|+|+|..+...+...+|+.|+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~-------------------------------------- 218 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKR-------------------------------------- 218 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCE--------------------------------------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEE--------------------------------------
Confidence 457889999999999999999999987532233333433321
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc--ccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IAT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~--~~~ 193 (441)
-. +.-++ ..+.++||||+... .+.+..+..+.. ..++..+|.++++++.++.. ...
T Consensus 219 --------------~~--i~~~g-~~v~l~DT~G~i~~----lp~~lve~f~~t-l~~~~~aD~il~VvD~s~~~~~~~~ 276 (364)
T 2qtf_A 219 --------------YA--IPINN-RKIMLVDTVGFIRG----IPPQIVDAFFVT-LSEAKYSDALILVIDSTFSENLLIE 276 (364)
T ss_dssp --------------EE--EEETT-EEEEEEECCCBCSS----CCGGGHHHHHHH-HHGGGGSSEEEEEEETTSCHHHHHH
T ss_pred --------------EE--EEECC-EEEEEEeCCCchhc----CCHHHHHHHHHH-HHHHHhCCEEEEEEECCCCcchHHH
Confidence 01 22222 46889999998652 144455544443 45778899888877654432 111
Q ss_pred --HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 --SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 --~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+.++++.+...+.++|+|.||+|+.+.+
T Consensus 277 ~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 277 TLQSSFEILREIGVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp HHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred HHHHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence 123456666665678999999999998654
No 62
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.44 E-value=1.5e-13 Score=124.29 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+........+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 45 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF----------------------------------------- 45 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE-----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 456899999999999999999999875211111111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
. ...+.+ ......+.|+||||.... ..+...|+..+|++|++++..+... . ..
T Consensus 46 ---------~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~ 100 (206)
T 2bcg_Y 46 ---------K--IKTVEL-DGKTVKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVYDVTDQESFNGVK 100 (206)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEEECcCHHHHHHHH
Confidence 0 001111 111247899999997543 2345678888998888876544221 0 11
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+......+.++++|+||+|+.+..
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~~ 129 (206)
T 2bcg_Y 101 MWLQEIDRYATSTVLKLLVGNKCDLKDKR 129 (206)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCCEEEEEECCCCcccc
Confidence 23334444445578999999999997643
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.44 E-value=9.1e-14 Score=122.17 Aligned_cols=119 Identities=22% Similarity=0.243 Sum_probs=73.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 53 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS----------------------------------------- 53 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE-----------------------------------------
Confidence 579999999999999999999877632222221111100
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~ 196 (441)
..+.+ ......+.|+||||.... ..+...|+..++++|++++..+.. +. ...+
T Consensus 54 -----------~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 108 (179)
T 2y8e_A 54 -----------KTMYL-EDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108 (179)
T ss_dssp -----------EEEEE-TTEEEEEEEEEECCSGGG-------------GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHH
T ss_pred -----------EEEEE-CCeEEEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHH
Confidence 00011 111236899999996442 245667888999888887654321 11 1223
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+..+....+.+.|+++|+||+|+.+..
T Consensus 109 ~~~i~~~~~~~~piilv~nK~Dl~~~~ 135 (179)
T 2y8e_A 109 IDDVRTERGSDVIIMLVGNKTDLSDKR 135 (179)
T ss_dssp HHHHHHHHTTSSEEEEEEECGGGGGGC
T ss_pred HHHHHHhcCCCCcEEEEEECCcccccC
Confidence 333333334578999999999997543
No 64
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=9.2e-14 Score=124.28 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=78.2
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
....+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---------------------------------------- 60 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF---------------------------------------- 60 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE----------------------------------------
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE----------------------------------------
Confidence 4567899999999999999999998775322111110000
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--cc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--AT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~ 193 (441)
....+.+ ......+.|+||||... ...+...|++.++++|++++..+... ..
T Consensus 61 ------------~~~~~~~-~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 114 (191)
T 3dz8_A 61 ------------KVKTVYR-HEKRVKLQIWDTAGQER-------------YRTITTAYYRGAMGFILMYDITNEESFNAV 114 (191)
T ss_dssp ------------EEEEEEE-TTTTEEEEEECHHHHHH-------------CHHHHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred ------------EEEEEEE-CCEEEEEEEEeCCChHH-------------HHHHHHHHHccCCEEEEEEECcCHHHHHHH
Confidence 0011111 12335689999999532 25678889999999888876543211 11
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..+......+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 115 QDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 23444555555568899999999998654
No 65
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.44 E-value=3.7e-13 Score=118.52 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
-.+|+++|.+|+|||||+|+|+|..+. .++..|
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~-----~~~~~~------------------------------------------ 36 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAA-----IVTDIA------------------------------------------ 36 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS-----CCCSST------------------------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcc-----eeeCCC------------------------------------------
Confidence 347999999999999999999997641 111111
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATSDA 196 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~~~ 196 (441)
+.+..+... .+.. +...+.++||||+.... .......-.....|++.++.++++++..+.. .....+
T Consensus 37 --~~t~~~~~~----~~~~-~~~~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~ 104 (172)
T 2gj8_A 37 --GTTRDVLRE----HIHI-DGMPLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEI 104 (172)
T ss_dssp --TCCCSCEEE----EEEE-TTEEEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHH
T ss_pred --CceeceeeE----EEEE-CCeEEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 000111000 1111 22358999999996531 1121111122446788899888887654322 222334
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
+..+....+.+.|+++|+||+|+.+
T Consensus 105 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 105 WPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp CHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHHhcccCCCEEEEEECccCCc
Confidence 4444444555789999999999864
No 66
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.44 E-value=1.6e-13 Score=119.39 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=73.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~------------------------------------------ 41 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFL------------------------------------------ 41 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE------------------------------------------
Confidence 47999999999999999999988753222111111000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH---
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD--- 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~--- 195 (441)
...+.+ ......+.++||||.... ..+...|++++|++|++++..+... ...
T Consensus 42 ----------~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~ 96 (170)
T 1ek0_A 42 ----------TQRVTI-NEHTVKFEIWDTAGQERF-------------ASLAPXYYRNAQAALVVYDVTKPQS-FIKARH 96 (170)
T ss_dssp ----------EEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHH-HHHHHH
T ss_pred ----------EEEEEE-CCEEEEEEEEECCCChhh-------------hhhhhhhhccCcEEEEEEecCChHH-HHHHHH
Confidence 000111 112246899999996442 3557788999998888876544211 112
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..+......+.|+++|+||+|+.+.
T Consensus 97 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 97 WVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 222333333457899999999999754
No 67
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.44 E-value=1.6e-13 Score=122.71 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~----------------------------------------- 58 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF----------------------------------------- 58 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSE-----------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccccee-----------------------------------------
Confidence 345899999999999999999998876322211111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
. ...+.+ ......+.|+||||.... ..+...|++.++++|++++..+... . ..
T Consensus 59 ---------~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~ 113 (191)
T 2a5j_A 59 ---------G--ARMVNI-DGKQIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLT 113 (191)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 0 001111 111247899999996543 2345678889999888876544221 1 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.++++|+||+|+.+.
T Consensus 114 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 114 SWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 2333444444557899999999999753
No 68
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.44 E-value=2.8e-13 Score=119.94 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=84.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ +......+..... .
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~-~------------------------------------- 57 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYL-K------------------------------------- 57 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEE-E-------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeE-E-------------------------------------
Confidence 456899999999999999999998765 2222211111100 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
.+ ........+.++||||.... ..+...|++.+|++|++++..+.. +. ..
T Consensus 58 --------------~~-~~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (183)
T 3kkq_A 58 --------------HT-EIDNQWAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVD 109 (183)
T ss_dssp --------------EE-EETTEEEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred --------------EE-EeCCcEEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 00 11111234778999997543 244567788899888887654421 10 11
Q ss_pred HHHH-HHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeC-ChhhhccC
Q 013508 195 DAMK-LAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNR-SQADINRN 255 (441)
Q Consensus 195 ~~l~-l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~-s~~~~~~~ 255 (441)
.++. +.+.....+.|+++|+||+|+.+......+............|+.+.+. +..+++..
T Consensus 110 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 110 RFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 2222 3333455678999999999997643321111111111223456666555 44444433
No 69
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.43 E-value=5.7e-14 Score=128.32 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=61.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.|+||||..... .+...|+..+|++|++++..+... ....++..+....+.+.++++|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 468999999975431 334567888998888876544311 11233344555555678999999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHHH
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~~ 262 (441)
|+.+......+............|+.+.+.++.+++..+..+...
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 128 DIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp TCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred CCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 997653221222111112223345666655555555544444443
No 70
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.43 E-value=3e-13 Score=119.31 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~------------------------------------------ 48 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA------------------------------------------ 48 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE------------------------------------------
Confidence 34689999999999999999999887632211111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
+. ...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+... . ..
T Consensus 49 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 104 (181)
T 2efe_B 49 --------FF--SQTLAV-NDATVKFEIWDTAGQERY-------------HSLAPMYYRGAAAAIIVFDVTNQASFERAK 104 (181)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEEECCCSGGG-------------GGGTHHHHTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------EE--EEEEEE-CCEEEEEEEEeCCCChhh-------------hhhhHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00 001111 112347899999996442 3456778889998888876543211 1 11
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..+......+.|+++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 105 KWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 22333333334478899999999997644
No 71
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.43 E-value=1.3e-13 Score=121.43 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|.+|+|||||+|+|++..+. ......+.....
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~--------------------------------------- 47 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYFV-SDYDPTIEDSYT--------------------------------------- 47 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSCC-SSCCTTCCEEEE---------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcCc-cccCCCcCceEE---------------------------------------
Confidence 4578999999999999999999998652 221111111110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
-.+.+ ......+.|+||||.... ..+...|+...+++|++++..+... . ..
T Consensus 48 -------------~~~~~-~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (181)
T 2fn4_A 48 -------------KICSV-DGIPARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVG 100 (181)
T ss_dssp -------------EEEEE-TTEEEEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHH
Confidence 00001 111246889999997543 2345667788998888876544211 0 11
Q ss_pred HHH-HHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAM-KLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l-~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++ .+.+.....+.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 101 KLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122 2334455668899999999999754
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.43 E-value=2.1e-13 Score=117.94 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+.+.. ...+.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~~~~~~~~~----------------------------------------- 41 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC-DPTIEDSYR----------------------------------------- 41 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEE-----------------------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc-CCccceEEE-----------------------------------------
Confidence 37999999999999999999988753221 111110000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~ 196 (441)
..+.+ ......+.++||||.... ..+...|+...++++++++..+.... ...+
T Consensus 42 -----------~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 96 (166)
T 2ce2_X 42 -----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96 (166)
T ss_dssp -----------EEEEE-TTEEEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHH
Confidence 00011 112246889999997543 25667788889988888765432110 1122
Q ss_pred HHHHHH-hCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLARE-VDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~-~~~~~~r~i~VltK~D~~~~ 222 (441)
+..+.. ....+.|+++|+||+|+.+.
T Consensus 97 ~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 97 REQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 222222 23347899999999999864
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=1.5e-13 Score=119.83 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHHhCC--CCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDP--TGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~~--~~~r~i~Vlt 215 (441)
..+.++||||.... ..+...|+..++++|++++..+.. +. ...++..+..... .+.|+++|+|
T Consensus 51 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 51 CTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEEECCSCSSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEEECCCchhh-------------HHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 46899999997543 366778888899888887654322 11 1223333333321 3689999999
Q ss_pred cCCCCCCc
Q 013508 216 KLDLMDKG 223 (441)
Q Consensus 216 K~D~~~~~ 223 (441)
|+|+.+..
T Consensus 118 K~Dl~~~~ 125 (172)
T 2erx_A 118 KCDESPSR 125 (172)
T ss_dssp CGGGGGGC
T ss_pred cccccccc
Confidence 99987543
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.43 E-value=3.1e-13 Score=123.25 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=47.4
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCC----CCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP----TGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~----~~~r~i~Vlt 215 (441)
..+.||||||... ...+...|+...|++|++++..+. ..-.....++..+.. .+.++++|+|
T Consensus 84 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~-~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 84 VHLQLWDTAGQER-------------FRSLTTAFFRDAMGFLLMFDLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEESHHH-------------HHHHHHHHHTTCCEEEEEEETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred EEEEEEECCCcHh-------------HHhHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 4689999999522 256788899999988888765432 212223334454443 4689999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+.+.
T Consensus 150 K~Dl~~~ 156 (217)
T 2f7s_A 150 KADLPDQ 156 (217)
T ss_dssp CTTCGGG
T ss_pred CCccccc
Confidence 9999753
No 75
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.43 E-value=4.2e-13 Score=121.25 Aligned_cols=120 Identities=21% Similarity=0.266 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+ .. .|+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~-----~~t~--------------------------------------- 62 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQ-----GSTI--------------------------------------- 62 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CC-----CCCc---------------------------------------
Confidence 45689999999999999999999887521 11 0100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
+ ..+. ...+.+ ......+.|+||||.... ..+...|++.++++|++++..+.. +. ..
T Consensus 63 ---~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 121 (201)
T 2hup_A 63 ---G--VDFT--MKTLEI-QGKRVKLQIWDTAGQERF-------------RTITQSYYRSANGAILAYDITKRSSFLSVP 121 (201)
T ss_dssp -------CEE--EEEEEE-TTEEEEEEEECCTTCGGG-------------HHHHHHHHTTCSEEEEEEETTBHHHHHTHH
T ss_pred ---c--eEEE--EEEEEE-CCEEEEEEEEECCCcHhH-------------HHHHHHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0 0000 001111 111247899999997442 467888999999988888654421 11 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.++++|+||+|+.+.
T Consensus 122 ~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 122 HWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 2333444444567899999999999753
No 76
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.42 E-value=1e-13 Score=120.48 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~---------------------------------------- 43 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL---------------------------------------- 43 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE----------------------------------------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEE----------------------------------------
Confidence 3468999999999999999999987652211111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-H
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-S 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~ 194 (441)
...+.+ ......+.|+||||.... ..+...|+..+++++++++..+.. +.. .
T Consensus 44 ------------~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 97 (168)
T 1z2a_A 44 ------------ERQIQV-NDEDVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAIS 97 (168)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHH
Confidence 001111 112347899999996542 234667888999888887654432 111 1
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+.... .+.|+++|+||+|+.+.
T Consensus 98 ~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 98 SWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 2222222222 36899999999999754
No 77
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.42 E-value=2.3e-13 Score=121.36 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 56 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD------------------------------------------ 56 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCC------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceE------------------------------------------
Confidence 45689999999999999999999877632211111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHH-HHHHHhhcCCCeEEEEeccCcccc--cc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIE-SMVRSYVEKPNSVILAISPANQDI--AT 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~-~~v~~yi~~~~~iil~v~~a~~~~--~~ 193 (441)
+ ....+.+ ......+.|+||||.... . .+...|++.++++|++++..+... ..
T Consensus 57 --------~--~~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~ 112 (189)
T 1z06_A 57 --------F--RERAVDI-DGERIKIQLWDTAGQERF-------------RKSMVQHYYRNVHAVVFVYDMTNMASFHSL 112 (189)
T ss_dssp --------E--EEEEEEE-TTEEEEEEEEECCCSHHH-------------HTTTHHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred --------E--EEEEEEE-CCEEEEEEEEECCCchhh-------------hhhhhHHHhcCCCEEEEEEECcCHHHHHHH
Confidence 0 0001111 111247899999996321 3 567888999998888876544211 11
Q ss_pred HHHHHHH-HHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLA-REVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~-~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..+ +.....+.++++|+||+|+.+.
T Consensus 113 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 113 PAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp HHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 2233323 3333567899999999999754
No 78
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.42 E-value=6.4e-13 Score=115.15 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=72.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++|+|||||+|++++..+ +. ..|+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~-~~------~~~t------------------------------------------- 31 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI-VT------TIPT------------------------------------------- 31 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS-SC------CCCC-------------------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc-Cc------ccCc-------------------------------------------
Confidence 699999999999999999998765 21 1121
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
.++.. . .+.. ....+.++||||.... +.+...|+.++|+++++++..+.. .-......
T Consensus 32 ---~~~~~--~--~~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~ 89 (164)
T 1r8s_A 32 ---IGFNV--E--TVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRE-RVNEAREE 89 (164)
T ss_dssp ---SSCCE--E--EEEC-SSCEEEEEECCCCGGG-------------HHHHHHHTTTCSEEEEEEETTCGG-GHHHHHHH
T ss_pred ---CceeE--E--EEEE-CCEEEEEEEcCCChhh-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHHHHH
Confidence 00000 0 1111 3457999999998542 467788999999988887654432 11222223
Q ss_pred HHHh----CCCCCcEEEEeccCCCCCC
Q 013508 200 AREV----DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 200 ~~~~----~~~~~r~i~VltK~D~~~~ 222 (441)
+..+ ...+.|+++|+||+|+.+.
T Consensus 90 ~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 90 LMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 3322 2237899999999999764
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.42 E-value=3.8e-13 Score=120.62 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=74.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|+|+|.+|+|||||+|+|++..+....... |...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~---------------------------------------- 53 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGY---------------------------------------- 53 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSE----------------------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccce----------------------------------------
Confidence 45678999999999999999999998862211111 1100
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
... .+. .....+.|+||||.... ..+...|++.+|++|++++..+.+- -..
T Consensus 54 ----------~~~----~~~-~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~s-~~~ 104 (199)
T 4bas_A 54 ----------NVE----TFE-KGRVAFTVFDMGGAKKF-------------RGLWETYYDNIDAVIFVVDSSDHLR-LCV 104 (199)
T ss_dssp ----------EEE----EEE-ETTEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEETTCGGG-HHH
T ss_pred ----------eEE----EEE-eCCEEEEEEECCCCHhH-------------HHHHHHHHhcCCEEEEEEECCcHHH-HHH
Confidence 000 111 23457899999998543 3556688999999888886654321 112
Q ss_pred HHHHHHHhCC-----------CCCcEEEEeccCCCCCCc
Q 013508 196 AMKLAREVDP-----------TGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~l~~~~~~-----------~~~r~i~VltK~D~~~~~ 223 (441)
.......+.. .+.++++|+||+|+....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 143 (199)
T 4bas_A 105 VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK 143 (199)
T ss_dssp HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC
Confidence 2222222222 278999999999998653
No 80
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.42 E-value=7.6e-14 Score=121.91 Aligned_cols=117 Identities=23% Similarity=0.385 Sum_probs=70.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
++|+++|++|+|||||+|+|+|..+ +.+. .|.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~-----~~~------------------------------------------ 35 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGN-----WPG------------------------------------------ 35 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC---------------------------------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccC-----CCC------------------------------------------
Confidence 5799999999999999999999764 2211 110
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+.. ...-. +.. +...+.++||||..... +.... +.+...|+. +++.++++++..+. ...
T Consensus 36 --~t~~--~~~~~--~~~-~~~~l~i~Dt~G~~~~~----~~~~~---~~~~~~~~~~~~~~~~i~v~D~~~~----~~~ 97 (165)
T 2wji_A 36 --VTVE--KKEGE--FEY-NGEKFKVVDLPGVYSLT----ANSID---EIIARDYIINEKPDLVVNIVDATAL----ERN 97 (165)
T ss_dssp ---CCC--CCEEE--EEE-TTEEEEEEECCCCSCSS----SSSHH---HHHHHHHHHHHCCSEEEEEEETTCH----HHH
T ss_pred --ccee--eeEEE--EEE-CCcEEEEEECCCcccCC----Ccchh---HHHHHHHHhcCCCCEEEEEecCCch----hHh
Confidence 0000 00011 111 23478999999987642 11222 356667765 78887777755432 122
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
..++.++...+.|+++|.||+|+..
T Consensus 98 ~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 98 LYLTLQLMEMGANLLLALNKMDLAK 122 (165)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEchHhcc
Confidence 2233333335789999999999863
No 81
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.41 E-value=3e-13 Score=117.87 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=65.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+.+|+|+|.+|+|||||+|+|++..+-.......|....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~----------------------------------------- 40 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTY----------------------------------------- 40 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEE-----------------------------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCee-----------------------------------------
Confidence 458999999999999999999987642111111110000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~ 195 (441)
...+.+ ......+.++||||..... ..+...|++.+++++++++..+.. +. ...
T Consensus 41 -----------~~~~~~-~~~~~~~~i~D~~g~~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 96 (169)
T 3q85_A 41 -----------ERRIMV-DKEEVTLIVYDIWEQGDAG------------GWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96 (169)
T ss_dssp -----------EEEEEE-TTEEEEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------eEEEEE-CCeEEEEEEEECCCccccc------------hhhhhhhhccCCEEEEEEECCChHHHHHHHH
Confidence 001111 1123468899999985431 124445677789888887654421 11 112
Q ss_pred HHH-HHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMK-LAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~-l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++. +.+.....+.|+++|+||+|+.+..
T Consensus 97 ~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 125 (169)
T 3q85_A 97 TLLRLRAGRPHHDLPVILVGNKSDLARSR 125 (169)
T ss_dssp HHHHHHHHSTTSCCCEEEEEECTTCGGGC
T ss_pred HHHHHHhcccCCCCCEEEEeeCcchhhcc
Confidence 222 2222233478999999999987543
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=120.77 Aligned_cols=118 Identities=17% Similarity=0.225 Sum_probs=72.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
....+|+|+|.+|+|||||+|+|++...++.... .|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~---------------------------------------- 57 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGF---------------------------------------- 57 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSE----------------------------------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-Cccce----------------------------------------
Confidence 3457899999999999999999999863232211 11111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT- 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~- 193 (441)
.. - .+.. +...+.|+||||.... +.+...|+.++|++|++++..+.. +..
T Consensus 58 ----------~~--~--~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~ 109 (190)
T 2h57_A 58 ----------SI--E--KFKS-SSLSFTVFDMSGQGRY-------------RNLWEHYYKEGQAIIFVIDSSDRLRMVVA 109 (190)
T ss_dssp ----------EE--E--EEEC-SSCEEEEEEECCSTTT-------------GGGGGGGGGGCSEEEEEEETTCHHHHHHH
T ss_pred ----------eE--E--EEEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHH
Confidence 00 0 1111 2358999999997543 345667889999888887654321 111
Q ss_pred HHHHH-HHHHhCC--CCCcEEEEeccCCCCCC
Q 013508 194 SDAMK-LAREVDP--TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~-l~~~~~~--~~~r~i~VltK~D~~~~ 222 (441)
...+. +.+.... .+.++++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 110 KEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 11121 2222221 47899999999999764
No 83
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.41 E-value=6.1e-13 Score=118.24 Aligned_cols=125 Identities=18% Similarity=0.294 Sum_probs=72.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+++|+|+|.+|+|||||+|+|++..+.+.....+|+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~------------------------------------------ 38 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI------------------------------------------ 38 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC------------------------------------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee------------------------------------------
Confidence 36899999999999999999999875221111112211
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC-CCe--EEEEeccCcccccc-
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK-PNS--VILAISPANQDIAT- 193 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~-~~~--iil~v~~a~~~~~~- 193 (441)
..+.+ ..+.++||||+..... .+....+....+...|+.. .+. +++.|.++......
T Consensus 39 ------------~~~~~-----~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~ 99 (190)
T 2cxx_A 39 ------------IEIEW-----KNHKIIDMPGFGFMMG--LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEII 99 (190)
T ss_dssp ------------EEEEE-----TTEEEEECCCBSCCTT--SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHH
T ss_pred ------------EEEec-----CCEEEEECCCcccccc--CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHH
Confidence 11112 1789999999765321 1223345556777777764 432 23333333221000
Q ss_pred HH---------HHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 194 SD---------AMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 ~~---------~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.. ..++.+.+...+.|+++|+||+|+....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 100 KRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 11 1223344444578999999999998653
No 84
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=124.75 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+. ......+..... .
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~-~------------------------------------- 63 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYS-K------------------------------------- 63 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEE-E-------------------------------------
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEE-E-------------------------------------
Confidence 4568999999999999999999998762 221111111100 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+ ........+.|+||||..... .+...|+..++++|++++..+... -...
T Consensus 64 --------------~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 114 (201)
T 3oes_A 64 --------------IV-TLGKDEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLHS-FQVI 114 (201)
T ss_dssp --------------EE-C----CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHHH-HHHH
T ss_pred --------------EE-EECCEEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHHH-HHHH
Confidence 00 011123467999999975531 345678888998888876544221 1222
Q ss_pred HHHHHHh----CCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREV----DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~----~~~~~r~i~VltK~D~~~~~ 223 (441)
..+...+ ...+.|+++|+||+|+.+..
T Consensus 115 ~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 145 (201)
T 3oes_A 115 ESLYQKLHEGHGKTRVPVVLVGNKADLSPER 145 (201)
T ss_dssp HHHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence 2233333 23467999999999987543
No 85
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=4.5e-13 Score=119.65 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+++|||||+|+|++..+.+......+....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 53 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFK----------------------------------------- 53 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEE-----------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEE-----------------------------------------
Confidence 468999999999999999999998763222111111000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
...+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. ......
T Consensus 54 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~ 107 (195)
T 1x3s_A 54 -----------VKTISV-DGNKAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVYDVTRRD-TFVKLD 107 (195)
T ss_dssp -----------EEEEEE-TTEEEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEEETTCHH-HHHTHH
T ss_pred -----------EEEEEE-CCeEEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEEECcCHH-HHHHHH
Confidence 001111 112347899999997543 244667888999888887654321 111222
Q ss_pred HHHHHhC----CCCCcEEEEeccCCCCCC
Q 013508 198 KLAREVD----PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~~----~~~~r~i~VltK~D~~~~ 222 (441)
.++..+. ..+.++++|+||+|+...
T Consensus 108 ~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 108 NWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp HHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred HHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 2333333 246889999999999543
No 86
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=121.92 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=72.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------------------------------------- 61 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATL--------------------------------------------- 61 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------------------------------------------------
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCc---------------------------------------------
Confidence 45789999999999999999999887521110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
| ..+. ...+.+ ......+.|+||||.... ..+...|+..+|++|++++..+... . ..
T Consensus 62 ---~--~~~~--~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~d~~~~~s~~~~~ 120 (199)
T 2p5s_A 62 ---G--VDFQ--MKTLIV-DGERTVLQLWDTAGQERF-------------RSIAKSYFRKADGVLLLYDVTCEKSFLNIR 120 (199)
T ss_dssp --------CE--EEEEEE-TTEEEEEEEEECTTCTTC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ---c--ceeE--EEEEEE-CCEEEEEEEEECCCCcch-------------hhhHHHHHhhCCEEEEEEECCChHHHHHHH
Confidence 0 0000 011111 112246899999997542 4667888899999888876543211 1 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
.++..++.....+.|+++|+||+|+.
T Consensus 121 ~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 121 EWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHC---CCEEEEEECGGGH
T ss_pred HHHHHHHHhcCCCCCEEEEEECcccc
Confidence 33444555555578999999999986
No 87
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.41 E-value=3.5e-13 Score=117.22 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=72.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+.+......+ ..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~----------------------------------------- 42 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG--AA----------------------------------------- 42 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS--EE-----------------------------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eE-----------------------------------------
Confidence 45799999999999999999998765322111100 00
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~ 195 (441)
.....+.+ ......+.++||||.... ..+...|+..++++|++++..+.. +.. ..
T Consensus 43 ---------~~~~~~~~-~~~~~~~~~~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 99 (170)
T 1r2q_A 43 ---------FLTQTVCL-DDTTVKFEIWDTAGQERY-------------HSLAPMYYRGAQAAIVVYDITNEESFARAKN 99 (170)
T ss_dssp ---------EEEEEEEE-TTEEEEEEEEEECCSGGG-------------GGGHHHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ---------EEEEEEEE-CCEEEEEEEEeCCCcHHh-------------hhhhHHhccCCCEEEEEEECCCHHHHHHHHH
Confidence 00000011 112346899999997542 355778889999888887654422 111 12
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..+......+.++++|.||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 100 WVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEECccCccc
Confidence 222333333446789999999998754
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.41 E-value=3.4e-13 Score=121.81 Aligned_cols=119 Identities=16% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--------------------------------------- 47 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLT--------------------------------------- 47 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEE---------------------------------------
Confidence 45689999999999999999999987633222111111100
Q ss_pred hhcCCCCCcCCcceEEEEec-CCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-
Q 013508 117 RVTGKTKQISPIPIHLSIYS-PNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~-~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~- 193 (441)
. .+.. .....+.|+||||.... ..+...|++.+|.+|++++..+.. +..
T Consensus 48 -------------~--~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~ 99 (207)
T 1vg8_A 48 -------------K--EVMVDDRLVTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVFDVTAPNTFKTL 99 (207)
T ss_dssp -------------E--EEESSSCEEEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEEETTCHHHHHTH
T ss_pred -------------E--EEEECCEEEEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEEECCCHHHHHHH
Confidence 0 1111 12246899999997543 133456788899888887654321 111
Q ss_pred HHHHHHH-HHhC---CCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLA-REVD---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~-~~~~---~~~~r~i~VltK~D~~~~ 222 (441)
..++..+ .... +.+.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 100 DSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred HHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 1222222 2221 246799999999999843
No 89
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.41 E-value=3.8e-13 Score=118.48 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~----------------------------------------- 45 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF----------------------------------------- 45 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC-----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEE-----------------------------------------
Confidence 457899999999999999999999875221111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
....+.+.+.....+.|+||||.... ..+...|++..|++|++++..+... . ..
T Consensus 46 -----------~~~~~~~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 101 (182)
T 1ky3_A 46 -----------LTKEVTVDGDKVATMQVWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVTNASSFENIK 101 (182)
T ss_dssp -----------EEEEECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHH
T ss_pred -----------EEEEEEEcCCcEEEEEEEECCCChHh-------------hhhhHHHhhcCCEEEEEEECCChHHHHHHH
Confidence 00111111122357899999995432 3566778899998888876544221 0 11
Q ss_pred HHHHHHHHh----CCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREV----DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~----~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+... ...+.|+++|+||+|+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred HHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 222222221 1257899999999998643
No 90
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.40 E-value=1.4e-13 Score=121.87 Aligned_cols=120 Identities=15% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+.....++...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~----------------------------------------- 45 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF----------------------------------------- 45 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEE-----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-----------------------------------------
Confidence 356899999999999999999998765211111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
. ...+.+ ......+.|+||||.... ..+...|++.++++|++++..+... . ..
T Consensus 46 ---------~--~~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 100 (183)
T 2fu5_C 46 ---------K--IRTIEL-DGKRIKLQIWDTAGQERF-------------RTITTAYYRGAMGIMLVYDITNEKSFDNIR 100 (183)
T ss_dssp ---------E--EEEEEE-TTEEEEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---------E--EEEEEE-CCEEEEEEEEcCCCChhh-------------hhhHHHHHhcCCEEEEEEECcCHHHHHHHH
Confidence 0 001111 111247899999997442 3456678889998888876544211 0 11
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.|+++|+||+|+.+.
T Consensus 101 ~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 101 NWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp HHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred HHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 2333334443457899999999999754
No 91
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=123.34 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~------------------------------------------ 61 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVE------------------------------------------ 61 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CC------------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccce------------------------------------------
Confidence 45789999999999999999999987622111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
+. ...+.+ ......+.|+||||.... ..+...|++.++++|++++..+... . ..
T Consensus 62 --------~~--~~~~~~-~~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 117 (200)
T 2o52_A 62 --------FG--SRVVNV-GGKTVKLQIWDTAGQERF-------------RSVTRSYYRGAAGALLVYDITSRETYNSLA 117 (200)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTHHHH-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred --------eE--EEEEEE-CCeeeEEEEEcCCCcHhH-------------HHHHHHHhccCCEEEEEEECcCHHHHHHHH
Confidence 00 001111 111247899999996332 2446678889998888876544221 1 12
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.++++|+||+|+...
T Consensus 118 ~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 118 AWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2333344444567899999999998753
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.40 E-value=3e-13 Score=137.03 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=77.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|.+|+|||||+|+|+|..+. .++..|
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~-----~~~~~~----------------------------------------- 207 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERV-----IVSNVA----------------------------------------- 207 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTE-----EEC--------------------------------------------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCce-----eecCCC-----------------------------------------
Confidence 4679999999999999999999998752 222222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHH-HHHhhcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESM-VRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~-v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
|.+.... ... +.. +...+.||||||+.+..... +.++ ....+ ...|++.+|+++++++. ..... ..
T Consensus 208 ---gtT~d~~--~~~--~~~-~~~~~~l~DT~G~~~~~~~~--~~~e-~~~~~~~~~~~~~ad~~llv~D~-~~~~s-~~ 274 (436)
T 2hjg_A 208 ---GTTRDAV--DTS--FTY-NQQEFVIVDTAGMRKKGKVY--ETTE-KYSVLRALKAIDRSEVVAVVLDG-EEGII-EQ 274 (436)
T ss_dssp ---------C--CEE--EEE-TTEEEEETTHHHHTCBTTBC--CCCS-HHHHHHHHHHHHHCSEEEEEEET-TTCCC-HH
T ss_pred ---Cceeeee--EEE--EEE-CCeEEEEEECCCcCcCcccc--chHH-HHHHHHHHHHHHhCCEEEEEEcC-CcCCc-HH
Confidence 1000000 011 111 22358999999996643211 1111 11112 33578889987777754 44442 33
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
..+++..+...+.++|+|+||+|+.+...
T Consensus 275 ~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 275 DKRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 34566666556899999999999987544
No 93
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.40 E-value=2.3e-13 Score=120.21 Aligned_cols=120 Identities=21% Similarity=0.154 Sum_probs=70.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|.+|+|||||+|+|++..+ +......+.....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 44 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFT--------------------------------------- 44 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE---------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEE---------------------------------------
Confidence 456899999999999999999997664 2222111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~ 194 (441)
..+ ........+.|+||||..... .+...|++..++++++++..+.... ..
T Consensus 45 -------------~~~-~~~~~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 97 (181)
T 3t5g_A 45 -------------KLI-TVNGQEYHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIK 97 (181)
T ss_dssp -------------EEE-EETTEEEEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEE-EECCEEEEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHH
Confidence 000 011112467899999986531 3345678889988888765442110 01
Q ss_pred HHH-HHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAM-KLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l-~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++ .+.+.....+.|+++|+||+|+.+..
T Consensus 98 ~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 127 (181)
T 3t5g_A 98 VIHGKLLDMVGKVQIPIMLVGNKKDLHMER 127 (181)
T ss_dssp HHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence 111 23344444578999999999987544
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.39 E-value=4.5e-12 Score=112.93 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+. .... .|....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-~t~~~~---------------------------------------- 58 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI-PTVGFN---------------------------------------- 58 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC-CCCSEE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC-CCCcee----------------------------------------
Confidence 3468999999999999999999987752 1111 111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.. .+. .....+.|+||||... ...+...|+.++|++|++++..+... -...
T Consensus 59 ------------~~--~~~-~~~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s-~~~~ 109 (188)
T 1zd9_A 59 ------------MR--KIT-KGNVTIKLWDIGGQPR-------------FRSMWERYCRGVSAIVYMVDAADQEK-IEAS 109 (188)
T ss_dssp ------------EE--EEE-ETTEEEEEEEECCSHH-------------HHTTHHHHHTTCSEEEEEEETTCGGG-HHHH
T ss_pred ------------EE--EEE-eCCEEEEEEECCCCHh-------------HHHHHHHHHccCCEEEEEEECCCHHH-HHHH
Confidence 00 011 1245789999999643 24567788999999888876544321 1222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~~ 222 (441)
...+..+ . ..+.++++|+||+|+...
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 110 KNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 2222222 2 257899999999999764
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=5.1e-13 Score=118.87 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+. . ..|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~-----~~~t---------------------------------------- 47 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV--H-----TSPT---------------------------------------- 47 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE--E-----EECC----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC--c-----CcCC----------------------------------------
Confidence 4568999999999999999999987651 1 1111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.++... .+.+ +...+.|+||||.... +.+...|+.++|++|++++..+.. .-...
T Consensus 48 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 102 (187)
T 1zj6_A 48 ------IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRE-RISVT 102 (187)
T ss_dssp ------SCSSCE--EEEE---TTEEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTT-THHHH
T ss_pred ------CccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEeCCCHH-HHHHH
Confidence 011111 1112 2367899999998542 245677889999988887654432 11222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~~ 222 (441)
......+ . ..+.|+++|+||+|+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 103 REELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2222222 2 257899999999999764
No 96
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.38 E-value=1.6e-12 Score=115.77 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=65.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+.+.. ..++.....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~----------------------------------------- 59 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEY-DPTIEDSYR----------------------------------------- 59 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCCSCC-CTTCCEEEE-----------------------------------------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCcccc-CCccceEEE-----------------------------------------
Confidence 58999999999999999999988652211 111111100
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDA 196 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~ 196 (441)
..+.+ ......+.||||||.... ..+...|+..+++++++++..+... . ...+
T Consensus 60 -----------~~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 114 (190)
T 3con_A 60 -----------KQVVI-DGETCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNSKSFADINLY 114 (190)
T ss_dssp -----------EEEEE-TTEEEEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHH
T ss_pred -----------EEEEE-CCEEEEEEEEECCChHHH-------------HHHHHHhhCcCCEEEEEEECcCHHHHHHHHHH
Confidence 00011 111246899999996432 3566788999998888776543221 0 1122
Q ss_pred HHHHHHh-CCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV-DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~-~~~~~r~i~VltK~D~~~~ 222 (441)
+..+... ...+.|+++|+||+|+.+.
T Consensus 115 ~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 141 (190)
T 3con_A 115 REQIKRVKDSDDVPMVLVGNKCDLPTR 141 (190)
T ss_dssp HHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred HHHHHHHhCCCCCeEEEEEECCcCCcc
Confidence 2233332 3357899999999998763
No 97
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.38 E-value=2.4e-13 Score=119.54 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ +..... |.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~-t~------------------------------------------- 39 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQ-TI------------------------------------------- 39 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHH-TT-------------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCC-ce-------------------------------------------
Confidence 346899999999999999999998865 211100 00
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
| ..+. ...+.+.+.....+.|+||||.... ..+...|+..+|++|++++..+... . ..
T Consensus 40 ---~--~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (178)
T 2hxs_A 40 ---G--LDFF--LRRITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLE 99 (178)
T ss_dssp ---T--SSEE--EEEEEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHH
T ss_pred ---e--EEEE--EEEEEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHH
Confidence 0 0000 1111121111357899999997543 2456778899999888876544321 1 11
Q ss_pred HHHHHHHHhCC--CCCc-EEEEeccCCCCCC
Q 013508 195 DAMKLAREVDP--TGER-TFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~--~~~r-~i~VltK~D~~~~ 222 (441)
.++..+....+ .+.+ +++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 22233333211 1345 7899999999753
No 98
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.38 E-value=1.8e-12 Score=132.02 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|.+|+|||||+|+|+|.+. ..++..|.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~-----~~~~~~~g---------------------------------------- 228 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEER-----VIVSNVAG---------------------------------------- 228 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECC-------------------------------------------
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCc-----cccCCCCC----------------------------------------
Confidence 567999999999999999999999864 22222221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+..+. ... +.. +...++||||||+.+........+.. .......|++.+|++|++++. ...+. ...
T Consensus 229 ----tt~~~~--~~~--~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~--~~~~~~~~~~~ad~~llviD~-~~~~~-~~~ 295 (456)
T 4dcu_A 229 ----TTRDAV--DTS--FTY-NQQEFVIVDTAGMRKKGKVYETTEKY--SVLRALKAIDRSEVVAVVLDG-EEGII-EQD 295 (456)
T ss_dssp -------CTT--SEE--EEE-TTEEEEETTGGGTTTBTTBCCCCSHH--HHHHHHHHHHHCSEEEEEEET-TTCCC-HHH
T ss_pred ----eEEEEE--EEE--EEE-CCceEEEEECCCCCcCcccchHHHHH--HHHHHHHHHhhCCEEEEEEeC-CCCcC-HHH
Confidence 001110 111 111 23479999999997643221111111 112234578889988777654 44443 334
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCcC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKGT 224 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~~ 224 (441)
..++..+...+.++|+|+||+|+.+...
T Consensus 296 ~~~~~~~~~~~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 296 KRIAGYAHEAGKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSCCCS
T ss_pred HHHHHHHHHcCCCEEEEEEChhcCCCch
Confidence 4455555557899999999999987554
No 99
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.1e-12 Score=117.19 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=71.1
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|+|+|.+|||||||+|+|++..+.+ ...+..|+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~---~~~~~~~~~-------------------------------------- 84 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPLS-------------------------------------- 84 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc---ccccCCCce--------------------------------------
Confidence 357899999999999999999999987522 111111210
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC-ccccccH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA-NQDIATS 194 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a-~~~~~~~ 194 (441)
+ .. .....+.||||||..... ... .......+..++++|++++.. +... -.
T Consensus 85 ----~--~~------------~~~~~~~l~Dt~G~~~~~-----~~~----~~~~~~~~~~~~~~i~v~d~~~~~~~-~~ 136 (193)
T 2ged_A 85 ----A--AD------------YDGSGVTLVDFPGHVKLR-----YKL----SDYLKTRAKFVKGLIFMVDSTVDPKK-LT 136 (193)
T ss_dssp --------C------------CCCTTCSEEEETTCCBSS-----CCH----HHHHHHHGGGEEEEEEEEETTCCHHH-HH
T ss_pred ----e--ee------------ecCCeEEEEECCCCchHH-----HHH----HHHHHhhcccCCEEEEEEECCCCchh-HH
Confidence 0 00 034589999999996642 111 234445555688888877654 2111 11
Q ss_pred HHHH----HHHHh---CCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMK----LAREV---DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~----l~~~~---~~~~~r~i~VltK~D~~~~~ 223 (441)
.... +.... .+.+.|+++|+||+|+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 137 TTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 1111 22111 33578999999999998654
No 100
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.37 E-value=1e-12 Score=116.66 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|++++... .... .|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~-~t~~~----------------------------------------- 52 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV--DTIS-PTLGF----------------------------------------- 52 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC--SSCC-CCSSE-----------------------------------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC--Cccc-ccCcc-----------------------------------------
Confidence 456899999999999999999998762 1111 11110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
... .+.+ +...+.++||||.... ..+...|++++|++|++++..+.. .-...
T Consensus 53 ---------~~~--~~~~---~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 104 (186)
T 1ksh_A 53 ---------NIK--TLEH---RGFKLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADRQ-RMQDC 104 (186)
T ss_dssp ---------EEE--EEEE---TTEEEEEEEECCSHHH-------------HTTGGGGCTTCSEEEEEEETTCGG-GHHHH
T ss_pred ---------ceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhcCCCEEEEEEECcCHH-HHHHH
Confidence 000 1111 2457899999997432 355678889999888887654432 11222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~~~ 223 (441)
......+ . ..+.|+++|+||+|+.+..
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 2222222 2 2478999999999997653
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.36 E-value=4.2e-13 Score=119.54 Aligned_cols=114 Identities=21% Similarity=0.230 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++|+|||||+|+|++..+ +. ..|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~------~~~t---------------------------------------- 53 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-VT------TVPT---------------------------------------- 53 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-EE------ECSS----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-CC------cCCC----------------------------------------
Confidence 457899999999999999999988765 21 1110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.++... .+.+ +...+.++||||..... .+...|++++|++|++++..+.. .-...
T Consensus 54 ------~~~~~~--~~~~---~~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~-s~~~~ 108 (189)
T 2x77_A 54 ------VGVNLE--TLQY---KNISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTDRD-RMGVA 108 (189)
T ss_dssp ------TTCCEE--EEEE---TTEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTCCT-THHHH
T ss_pred ------CceEEE--EEEE---CCEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCCHH-HHHHH
Confidence 001101 1111 24578999999986532 23446778899888887654322 11222
Q ss_pred HHHHHHh----CCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV----DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~----~~~~~r~i~VltK~D~~~~ 222 (441)
......+ ...+.|+++|+||+|+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 109 KHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 2222222 2347899999999999765
No 102
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.36 E-value=3.8e-13 Score=121.36 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=44.1
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccHHHHHHHHHhCC---CCCcEEEEe
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATSDAMKLAREVDP---TGERTFGVL 214 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~~~l~l~~~~~~---~~~r~i~Vl 214 (441)
..+.|+||||... ...+...|+..+|++|++++..+... ....++..+....+ .+.|+++|+
T Consensus 73 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 139 (208)
T 2yc2_C 73 VELFLLDTAGSDL-------------YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVA 139 (208)
T ss_dssp EEEEEEETTTTHH-------------HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEE
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEE
Confidence 4789999999843 24677888999998888876544221 01223333444444 578999999
Q ss_pred ccCCCCC
Q 013508 215 TKLDLMD 221 (441)
Q Consensus 215 tK~D~~~ 221 (441)
||+|+.+
T Consensus 140 nK~Dl~~ 146 (208)
T 2yc2_C 140 NKTDLPP 146 (208)
T ss_dssp ECC----
T ss_pred ECcccch
Confidence 9999976
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2.2e-12 Score=115.62 Aligned_cols=119 Identities=21% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+... .|..... .
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~-~------------------------------------- 46 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--PTIEDTY-R------------------------------------- 46 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--CCCCEEE-E-------------------------------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--Cccccce-e-------------------------------------
Confidence 45689999999999999999999876521111 1110000 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
..+ ........+.|+||||.... ..+...|+..++++|++++..+.. +. ..
T Consensus 47 -------------~~~-~~~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (199)
T 2gf0_A 47 -------------QVI-SCDKSVCTLQITDTTGSHQF-------------PAMQRLSISKGHAFILVFSVTSKQSLEELG 99 (199)
T ss_dssp -------------EEE-EETTEEEEEEEEECCGGGSC-------------HHHHHHHHHHCSEEEEEEETTCHHHHHTTH
T ss_pred -------------EEE-EECCEEEEEEEEeCCChHHh-------------HHHHHHhhccCCEEEEEEECcCHHHHHHHH
Confidence 000 01112246899999997542 366778888899888887654321 11 12
Q ss_pred HHHHHHHHhCC--CCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDP--TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~--~~~r~i~VltK~D~~~~ 222 (441)
.++..+..+.. .+.|+++|+||+|+.+.
T Consensus 100 ~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 100 PIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 23333444322 36789999999999864
No 104
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.35 E-value=2.5e-12 Score=121.76 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
..++|+|+|.+|+|||||+|+|+|..+.+.+. ..+|+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~--------------------------------------- 78 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV--------------------------------------- 78 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCE---------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeE---------------------------------------
Confidence 45789999999999999999999988643332 12222221
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCcccccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIAT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~ 193 (441)
...+. .....++||||||+.+... ........+..|+. .+|++++++......+..
T Consensus 79 ---------------~~~~~-~~~~~l~iiDTpG~~~~~~------~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~ 136 (270)
T 1h65_A 79 ---------------MVSRS-RAGFTLNIIDTPGLIEGGY------INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDN 136 (270)
T ss_dssp ---------------EEEEE-ETTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCH
T ss_pred ---------------EEEEe-eCCeEEEEEECCCCCCCcc------chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCH
Confidence 11121 1345799999999976421 11122334455643 578777775432223322
Q ss_pred --HHHHHHHHHhCCC--CCcEEEEeccCCCCCCc
Q 013508 194 --SDAMKLAREVDPT--GERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 --~~~l~l~~~~~~~--~~r~i~VltK~D~~~~~ 223 (441)
..+++.+...... ..++++|+||+|+.++.
T Consensus 137 ~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 137 LDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 1233333332121 25899999999997654
No 105
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.35 E-value=4.5e-12 Score=125.02 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=74.8
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+.|+++|.+|+|||||+|+|+|..+...+....|+.+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~------------------------------------- 207 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG------------------------------------- 207 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE-------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE-------------------------------------
Confidence 3678999999999999999999999863111112222222110
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc---ccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ---DIA 192 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~---~~~ 192 (441)
.+.. ....+.++||||+....... ..... ...+..+...+|.++++++..+. ++.
T Consensus 208 -----------------~~~~-~~~~~~l~Dt~G~~~~~~~~-~~~~~---~~~~~~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 208 -----------------QFED-GYFRYQIIDTPGLLDRPISE-RNEIE---KQAILALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp -----------------EEEE-TTEEEEEEECTTTSSSCSTT-SCHHH---HHHHHGGGGTCSEEEEEECTTCTTSSCHH
T ss_pred -----------------EEEe-cCceEEEEeCCCccccchhh-hhHHH---HHHHHHHHhcCCEEEEEEeCCccccCCHH
Confidence 1111 23468999999997643211 11111 23334455568888777764432 221
Q ss_pred c-HHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 193 T-SDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 193 ~-~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
. ..++..+....+ +.++++|+||+|+....
T Consensus 266 ~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~ 296 (357)
T 2e87_A 266 EQIHLFEEVHGEFK-DLPFLVVINKIDVADEE 296 (357)
T ss_dssp HHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH
T ss_pred HHHHHHHHHHHhcC-CCCEEEEEECcccCChH
Confidence 1 223333333333 78999999999997543
No 106
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.1e-13 Score=122.13 Aligned_cols=120 Identities=14% Similarity=0.181 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+......+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~------------------------------------------ 49 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVE------------------------------------------ 49 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCS------------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccce------------------------------------------
Confidence 45689999999999999999999987622111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~ 194 (441)
+. ...+.+ ......+.||||||.... ..+...|++.++++|++++..+... . ..
T Consensus 50 --------~~--~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~D~~~~~s~~~~~ 105 (223)
T 3cpj_B 50 --------FA--TRTLEI-EGKRIKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVYDISKSSSYENCN 105 (223)
T ss_dssp --------EE--EEEEEE-TTEEEEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEEC-CCHHHHHHHH
T ss_pred --------eE--EEEEEE-CCEEEEEEEEECCCccch-------------hhhHHHHhccCCEEEEEEeCCCHHHHHHHH
Confidence 00 001111 111247899999997543 2345678888998888775443211 0 11
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+......+.|+++|+||+|+...
T Consensus 106 ~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 106 HWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp HHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred HHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 2233344444557899999999999753
No 107
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=2e-12 Score=116.01 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=73.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+.+..... +....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t-~~~~~---------------------------------------- 65 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPT-LESTY---------------------------------------- 65 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTT-CCEEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCC-CCceE----------------------------------------
Confidence 4568999999999999999999998752211111 00000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~ 194 (441)
...+.+ ......+.|+||||... ..+...|+..++++|++++..+.. +. ..
T Consensus 66 ------------~~~~~~-~~~~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~ 118 (196)
T 2atv_A 66 ------------RHQATI-DDEVVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVL 118 (196)
T ss_dssp ------------EEEEEE-TTEEEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHH
Confidence 000011 11234688999999854 256677888899888887654421 11 11
Q ss_pred HHHHHHHH-hCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLARE-VDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~-~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+.. ....+.|+++|+||+|+.+.
T Consensus 119 ~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 119 PLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 22333333 33457899999999999753
No 108
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.34 E-value=3.1e-12 Score=114.99 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cc-cHHHHHHHHHhCC-CCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IA-TSDAMKLAREVDP-TGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~-~~~~l~l~~~~~~-~~~r~i~VltK 216 (441)
..+.++||||..... ..+...|++.++++|++++..+.. +. ...++..+....+ .+.|+++|.||
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 467899999985421 135667788899888887654321 11 1223332333222 47899999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+.+..
T Consensus 140 ~Dl~~~~ 146 (195)
T 3cbq_A 140 SDLARSR 146 (195)
T ss_dssp TTCTTTC
T ss_pred hhccccC
Confidence 9997543
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=5.2e-13 Score=118.70 Aligned_cols=119 Identities=22% Similarity=0.344 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|++|+|||||+|+|+|..+.+......|..+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~--------------------------------------- 46 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKE--------------------------------------- 46 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEE---------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceE---------------------------------------
Confidence 34689999999999999999999976422211111211110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~~ 194 (441)
. .+.. +...+.++||||..... +.... +.+...|+. .++.++++++..+ + .
T Consensus 47 -------------~--~~~~-~~~~~~l~Dt~G~~~~~----~~~~~---~~~~~~~~~~~~~~~~i~v~d~~~--~--~ 99 (188)
T 2wjg_A 47 -------------G--EFEY-NGEKFKVVDLPGVYSLT----ANSID---EIIARDYIINEKPDLVVNIVDATA--L--E 99 (188)
T ss_dssp -------------E--EEEE-TTEEEEEEECCCCSCCS----SSSHH---HHHHHHHHHHHCCSEEEEEEEGGG--H--H
T ss_pred -------------E--EEEe-CCcEEEEEECCCcCccc----cccHH---HHHHHHHHhccCCCEEEEEecchh--H--H
Confidence 0 1111 23578999999987642 11122 345566664 4787777665433 1 2
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
....+...+...+.|+++|.||+|+..
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccc
Confidence 233344445456789999999999864
No 110
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.34 E-value=1.9e-13 Score=133.65 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
+|.|++||.+|||||||+|+|++.+........+|..|+.-
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--------------------------------------- 198 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--------------------------------------- 198 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE---------------------------------------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE---------------------------------------
Confidence 67899999999999999999998763222222344444210
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc---ccc-cc
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---QDI-AT 193 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~---~~~-~~ 193 (441)
.+..++...++|+||||+....... ..+. ....+++..++++|++++.++ .+. ..
T Consensus 199 ---------------~v~~~~~~~~~l~DtPG~i~~a~~~--~~l~----~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~ 257 (342)
T 1lnz_A 199 ---------------MVETDDGRSFVMADLPGLIEGAHQG--VGLG----HQFLRHIERTRVIVHVIDMSGLEGRDPYDD 257 (342)
T ss_dssp ---------------EEECSSSCEEEEEEHHHHHHHTTCT--TTTH----HHHHHHHHHCCEEEEEEESSCSSCCCHHHH
T ss_pred ---------------EEEeCCCceEEEecCCCCccccccc--chhH----HHHHHHHHhccEEEEEEECCcccccChHHH
Confidence 1222233579999999986532111 1111 222344566898888887654 221 11
Q ss_pred -HHHHHHHHHhCC--CCCcEEEEeccCCCCCCc
Q 013508 194 -SDAMKLAREVDP--TGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 194 -~~~l~l~~~~~~--~~~r~i~VltK~D~~~~~ 223 (441)
..+...+..+.+ ...|.++|+||+|+....
T Consensus 258 ~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 258 YLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp HHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 122334444443 478999999999998643
No 111
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.34 E-value=1.7e-12 Score=130.21 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=87.9
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+.|+|+|..|+|||||+|+|++.++.+. +..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~-----~~~~---------------------------------------- 66 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIV-----SDYA---------------------------------------- 66 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCcc-----CCCC----------------------------------------
Confidence 3567899999999999999999999876221 1111
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
|. +.+.....+.......+.||||||+.+...-+. .. .+.+..++..+|.+|++++. ... ..
T Consensus 67 ----gt----T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~-~~-----~~~~~~~l~~aD~vllVvD~-~~~---~~ 128 (423)
T 3qq5_A 67 ----GT----TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGR-LR-----VEKARRVFYRADCGILVTDS-APT---PY 128 (423)
T ss_dssp -----------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCC-CC-----HHHHHHHHTSCSEEEEECSS-SCC---HH
T ss_pred ----Ce----eeeeEEEEEEECCCCeEEEEECcCCCcccchhH-HH-----HHHHHHHHhcCCEEEEEEeC-CCh---HH
Confidence 00 001111112222333789999999986432111 11 13366788899988887754 322 22
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHHH
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIVA 261 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~~ 261 (441)
...+...+...+.|+++|+||+|+...... +..+.........++.+.+.++.+++..+..+..
T Consensus 129 ~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~ 192 (423)
T 3qq5_A 129 EDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISE 192 (423)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 233344444447899999999999876543 2211111222334455544444444444444433
No 112
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.33 E-value=2.7e-11 Score=107.28 Aligned_cols=115 Identities=20% Similarity=0.310 Sum_probs=74.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|++|+|||||+++|++..+ ... .|+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-----~~~--~~t---------------------------------------- 47 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDI-----SHI--TPT---------------------------------------- 47 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCC-----EEE--EEE----------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-----Ccc--cCc----------------------------------------
Confidence 467899999999999999999998854 111 111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.| +... . +.. +...+.++||||.... +.+...|+..+++++++++..+..- -...
T Consensus 48 --~g----~~~~--~--~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~ 102 (181)
T 1fzq_A 48 --QG----FNIK--S--VQS-QGFKLNVWDIGGQRKI-------------RPYWRSYFENTDILIYVIDSADRKR-FEET 102 (181)
T ss_dssp --TT----EEEE--E--EEE-TTEEEEEEECSSCGGG-------------HHHHHHHHTTCSEEEEEEETTCGGG-HHHH
T ss_pred --CC----eEEE--E--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHhCCCCEEEEEEECcCHHH-HHHH
Confidence 01 0000 1 111 2457899999997542 4667889999999988876544221 1222
Q ss_pred HHHHHHh----CCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREV----DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~----~~~~~r~i~VltK~D~~~~~ 223 (441)
......+ ...+.|+++|.||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 103 GQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 2222222 23578999999999997653
No 113
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.33 E-value=5.3e-12 Score=114.76 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+|+|++|+|||||+++|++..+ +......+. .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~-~----------------------------------------- 42 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITD-S----------------------------------------- 42 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSC-E-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcce-e-----------------------------------------
Confidence 467999999999999999999998875 222111110 0
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHH-HHHHhhcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIES-MVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~-~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
...+.+.+.....+.||||||.... .. +...|+..++++|++++..+..-....
T Consensus 43 ------------~~~~~~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~ 97 (214)
T 2fh5_B 43 ------------SAIYKVNNNRGNSLTLIDLPGHESL-------------RFQLLDRFKSSARAVVFVVDSAAFQREVKD 97 (214)
T ss_dssp ------------EEEEECSSTTCCEEEEEECCCCHHH-------------HHHHHHHHGGGEEEEEEEEETTTHHHHHHH
T ss_pred ------------eEEEEecCCCccEEEEEECCCChhH-------------HHHHHHHHHhhCCEEEEEEECCCcCHHHHH
Confidence 0011122222457999999998432 33 677889999988888765441111112
Q ss_pred HHH----HHHH--hCCCCCcEEEEeccCCCCCCc
Q 013508 196 AMK----LARE--VDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 196 ~l~----l~~~--~~~~~~r~i~VltK~D~~~~~ 223 (441)
..+ ++.. ....+.|+++|+||+|+....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 98 VAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 222 1211 234468999999999998654
No 114
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.33 E-value=7.7e-13 Score=116.94 Aligned_cols=114 Identities=19% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|||||||+|+|++..+ ... .|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~------~~----------------------------------------- 48 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV-VTT------KP----------------------------------------- 48 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE-EEE------CS-----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc-Ccc------CC-----------------------------------------
Confidence 456899999999999999999997664 100 01
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+.++... .+.+ +...+.++||||.... ..+...|+.++|++|++++..+. ..-...
T Consensus 49 -----t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~ 104 (183)
T 1moz_A 49 -----TIGFNVE--TLSY---KNLKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDK-DRMSTA 104 (183)
T ss_dssp -----STTCCEE--EEEE---TTEEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCT-TTHHHH
T ss_pred -----cCccceE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCH-HHHHHH
Confidence 0011111 1112 2367899999998653 23456678888988887765432 112222
Q ss_pred HHHHHHhC----CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVD----PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~----~~~~r~i~VltK~D~~~~ 222 (441)
......+. ..+.|+++|+||+|+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 105 SKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp HHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 33333332 357899999999999764
No 115
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.32 E-value=2.2e-12 Score=115.23 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-c----HHHHHHHHHh--CCCCCcEEE
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-T----SDAMKLAREV--DPTGERTFG 212 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-~----~~~l~l~~~~--~~~~~r~i~ 212 (441)
..+.|+||||.... ..+...|+++++++|++++....... + .....++.++ ...+.|+++
T Consensus 74 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVFY-------------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCSC-------------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHHH-------------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 46899999997553 35677899999998888765421100 1 1122233343 235789999
Q ss_pred EeccCCCCCC
Q 013508 213 VLTKLDLMDK 222 (441)
Q Consensus 213 VltK~D~~~~ 222 (441)
|+||+|+.+.
T Consensus 141 v~NK~Dl~~~ 150 (198)
T 3t1o_A 141 QVNKRDLPDA 150 (198)
T ss_dssp EEECTTSTTC
T ss_pred EEEchhcccc
Confidence 9999999764
No 116
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=117.20 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=69.5
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
....+|+|+|.+|+|||||+++|++..+ +.....++.....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~-------------------------------------- 58 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFS-------------------------------------- 58 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEE--------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeE--------------------------------------
Confidence 4567899999999999999999998874 3222222211100
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc-
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT- 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~- 193 (441)
..+.+ ......+.|+||||..... .+...|+.+++++|++++..+... ..
T Consensus 59 --------------~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 110 (201)
T 2q3h_A 59 --------------AVVSV-DGRPVRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNV 110 (201)
T ss_dssp --------------EEEEE-TTEEEEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHH
T ss_pred --------------EEEEE-CCEEEEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHH
Confidence 00011 1112367899999986531 334568889998888876544321 11
Q ss_pred -HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 -SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 -~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..+....+ +.|+++|+||+|+...
T Consensus 111 ~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 111 SEKWVPEIRCHCP-KAPIILVGTQSDLRED 139 (201)
T ss_dssp HHTHHHHHHHHCS-SSCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHhCC-CCCEEEEEECHhhhhc
Confidence 123333444333 7899999999999754
No 117
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.32 E-value=1.4e-12 Score=116.92 Aligned_cols=114 Identities=14% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++|+|||||+|+|++..+ +. ..|+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~-~~------~~~t~--------------------------------------- 61 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEI-VT------TIPTI--------------------------------------- 61 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCC-EE------EEEET---------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCc-cc------cCCcC---------------------------------------
Confidence 456899999999999999999998775 21 11210
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+ +.. .. +.. ....+.|+||||.... +.+...|+..+|++|++++..+.. .-...
T Consensus 62 ---~----~~~--~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~-s~~~~ 115 (192)
T 2b6h_A 62 ---G----FNV--ET--VEY-KNICFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRE-RVQES 115 (192)
T ss_dssp ---T----EEE--EE--EEE-TTEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGG-GHHHH
T ss_pred ---c----eeE--EE--EEE-CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 0 000 01 111 3457899999998542 245667888999988887654332 11222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~~ 222 (441)
...+..+ . ..+.|+++|+||+|+.+.
T Consensus 116 ~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 116 ADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 2222222 2 247899999999999754
No 118
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.32 E-value=1.4e-11 Score=116.11 Aligned_cols=125 Identities=17% Similarity=0.221 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccc-cccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGS-GIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~-~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+|+|+|..|+|||||+|+|+|..+...+. ..+|..+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 76 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVM-------------------------------------- 76 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEE--------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEE--------------------------------------
Confidence 45689999999999999999999987632221 112222211
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc--CCCeEEEEeccCcccccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE--KPNSVILAISPANQDIAT 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~--~~~~iil~v~~a~~~~~~ 193 (441)
..+.. +...++||||||+.+... ..+.....+++++. .++++++++......+..
T Consensus 77 ----------------~~~~~-~~~~l~liDTpG~~~~~~------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~ 133 (262)
T 3def_A 77 ----------------VSRTM-GGFTINIIDTPGLVEAGY------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDE 133 (262)
T ss_dssp ----------------EEEEE-TTEEEEEEECCCSEETTE------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCH
T ss_pred ----------------EEEEE-CCeeEEEEECCCCCCccc------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCH
Confidence 11111 234899999999976421 12222344555554 367666664332223322
Q ss_pred H--HHHHHHHHhCCC--CCcEEEEeccCCCCCC
Q 013508 194 S--DAMKLAREVDPT--GERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~--~~l~l~~~~~~~--~~r~i~VltK~D~~~~ 222 (441)
. ..++.++..... ..++++|+||+|+.+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 134 LDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 2 344444443222 2489999999998754
No 119
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.32 E-value=6.4e-14 Score=126.22 Aligned_cols=120 Identities=15% Similarity=0.193 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+........+....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 71 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK---------------------------------------- 71 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE----------------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE----------------------------------------
Confidence 4578999999999999999999998762221111111110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
...+.+ ......+.|+||||..... .+...|++.+|++|++++..+... ...
T Consensus 72 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 125 (199)
T 3l0i_B 72 ------------IRTIEL-DGKTIKLQIWDTAGQERFR-------------TITSSYYRGAHGIIVVYDVTDQESFNNVK 125 (199)
T ss_dssp ------------EEEEEE-TTEEEEEEEECCTTCTTCC-------------CCSCC--CCCSEEEECC-CCCSHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHhHH-------------HHHHHHhhcCCEEEEEEECCCHHHHHHHH
Confidence 001111 1112468999999975431 334567788998888775543221 012
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..+....+.+.++++|+||+|+.+.
T Consensus 126 ~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 126 QWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp HHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 2333344444457899999999999754
No 120
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.31 E-value=6.4e-12 Score=112.80 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=76.3
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
....+|+|+|+.|+|||||++.+.|. +.+.. |.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~----~~------------------------------------------ 50 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSPNE----TL------------------------------------------ 50 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCGGG----GG------------------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCCcc----ee------------------------------------------
Confidence 35679999999999999999999986 32210 10
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHH---HHhhcCCCeEEEEeccCccc-c
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYVEKPNSVILAISPANQD-I 191 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v---~~yi~~~~~iil~v~~a~~~-~ 191 (441)
+..+....+...+.+.....+.|+||||..... .+. ..|+++++++|++++..+.. -
T Consensus 51 ------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 111 (196)
T 3llu_A 51 ------FLESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVIDAQDDYME 111 (196)
T ss_dssp ------GCCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEETTSCCHH
T ss_pred ------eeccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEECCCchHH
Confidence 011222233333444455789999999975531 223 67888999998888655431 1
Q ss_pred ccHHHHHHHHHh--CCCCCcEEEEeccCCCCCC
Q 013508 192 ATSDAMKLAREV--DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 192 ~~~~~l~l~~~~--~~~~~r~i~VltK~D~~~~ 222 (441)
.......++..+ ...+.++++|.||+|+.+.
T Consensus 112 ~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 112 ALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 112222334433 2347899999999999864
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.30 E-value=1e-12 Score=118.51 Aligned_cols=118 Identities=16% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|++++..+ +......+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~------------------------------------------- 60 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFE------------------------------------------- 60 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCC-------------------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccc-------------------------------------------
Confidence 35799999999999999999998875 2221111000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--H
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~ 194 (441)
.+. ..+.+ ......+.|+||||.... ..+...|++.+|++|++++..+.. +.. .
T Consensus 61 ------~~~---~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 117 (201)
T 2gco_A 61 ------NYI---ADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSIDSPDSLENIPE 117 (201)
T ss_dssp ------CCE---EEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------eEE---EEEEE-CCEEEEEEEEECCCchhH-------------HHHHHHhcCCCCEEEEEEECCCHHHHHHHHH
Confidence 000 01111 112246899999997542 234556888999888887554321 111 1
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..++...+ +.|+++|+||+|+.+..
T Consensus 118 ~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 145 (201)
T 2gco_A 118 KWTPEVKHFCP-NVPIILVGNKKDLRQDE 145 (201)
T ss_dssp THHHHHHHHST-TCCEEEEEECGGGTTCH
T ss_pred HHHHHHHHhCC-CCCEEEEEecHHhhcCc
Confidence 23344444433 68999999999998653
No 122
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.30 E-value=1.8e-12 Score=115.89 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+++|++..+ +.....++.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 56 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYA--------------------------------------- 56 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEE---------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeE---------------------------------------
Confidence 345899999999999999999998865 3222111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH-
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS- 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~- 194 (441)
..+.+ ......+.|+||||.... ..+...|+++++++|++++..+.. +...
T Consensus 57 -------------~~~~~-~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 109 (194)
T 2atx_A 57 -------------VSVTV-GGKQYLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVK 109 (194)
T ss_dssp -------------EEEES-SSCEEEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHH
Confidence 00111 112246889999998653 245567888999888887654432 1111
Q ss_pred -HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 -~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 110 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 110 EEWVPELKEYAP-NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HTHHHHHHHHST-TCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEEChhhccc
Confidence 23334444333 6899999999999864
No 123
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.30 E-value=2.3e-12 Score=126.87 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=79.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...++|++||.||+|||||+|+|+|.+........||+.|+.-
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g------------------------------------- 112 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPG------------------------------------- 112 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEE-------------------------------------
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeE-------------------------------------
Confidence 3467999999999999999999999887666777888888531
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHH
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~ 195 (441)
+......++.|+||||+...+..+ ... -+.+.+.++++|.|+++|+ ++.+....+
T Consensus 113 ------------------~~~~~~~~i~l~D~pGl~~~a~~~--~~~----g~~~l~~i~~ad~il~vvD-~~~p~~~~~ 167 (376)
T 4a9a_A 113 ------------------VIRYKGAKIQMLDLPGIIDGAKDG--RGR----GKQVIAVARTCNLLFIILD-VNKPLHHKQ 167 (376)
T ss_dssp ------------------EEEETTEEEEEEECGGGCCC-------CH----HHHHHHHHHHCSEEEEEEE-TTSHHHHHH
T ss_pred ------------------EEEeCCcEEEEEeCCCccCCchhh--hHH----HHHHHHHHHhcCccccccc-cCccHHHHH
Confidence 111123478999999998754221 112 2344566778997777764 443332222
Q ss_pred HH-HHHHHhCC--CCCcEEEEeccCCCC
Q 013508 196 AM-KLAREVDP--TGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l-~l~~~~~~--~~~r~i~VltK~D~~ 220 (441)
.+ ..+..++. ...|.++|+||.|.-
T Consensus 168 ~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 168 IIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 21 12222221 356789999999963
No 124
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.30 E-value=9.7e-13 Score=117.77 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=73.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ +......+.....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 61 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFS--------------------------------------- 61 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEE---------------------------------------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeE---------------------------------------
Confidence 346899999999999999999999875 2222111111000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-- 193 (441)
..+ ........+.|+||||.... ..+...|+.+++++|++++..+... ..
T Consensus 62 -------------~~~-~~~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 114 (194)
T 3reg_A 62 -------------HVM-KYKNEEFILHLWDTAGQEEY-------------DRLRPLSYADSDVVLLCFAVNNRTSFDNIS 114 (194)
T ss_dssp -------------EEE-EETTEEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEE-EECCEEEEEEEEECCCcHHH-------------HHHhHhhccCCcEEEEEEECCCHHHHHHHH
Confidence 000 11112235799999996442 2456678889998888876544211 11
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++... .+.|+++|+||+|+.+.
T Consensus 115 ~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 115 TKWEPEIKHYI-DTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HTHHHHHHHHC-TTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccC
Confidence 12333444333 36899999999999854
No 125
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.30 E-value=2.1e-12 Score=115.20 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=67.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+ +......+.....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~---------------------------------------- 59 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYS---------------------------------------- 59 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEE----------------------------------------
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceee----------------------------------------
Confidence 35799999999999999999998875 2221111110000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~ 195 (441)
..+.+ ......+.|+||||..... .+ ..|++.++++|++++..+.. +.. ..
T Consensus 60 ------------~~~~~-~~~~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~ 112 (187)
T 3c5c_A 60 ------------SEETV-DHQPVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSS 112 (187)
T ss_dssp ------------EEEEE-TTEEEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHHHHHHHHH
T ss_pred ------------EEEEE-CCEEEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHHHHHHHHH
Confidence 00011 1123468899999975431 11 35888899888887654321 111 11
Q ss_pred HHHHHHHhC---CCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVD---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~---~~~~r~i~VltK~D~~~~ 222 (441)
++..+.... ..+.++++|.||+|+...
T Consensus 113 ~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 113 YLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 222222221 247899999999999653
No 126
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.30 E-value=9.7e-12 Score=109.99 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ . .. .|+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~----~~--~~t---------------------------------------- 52 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-V----HT--SPT---------------------------------------- 52 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-E----EE--ECC----------------------------------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-C----cc--CCc----------------------------------------
Confidence 456899999999999999999999875 1 00 010
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.++... .+.+ +...+.|+||||.... +.+...|+.++|++|++++..+.. .-...
T Consensus 53 ------~~~~~~--~~~~---~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~D~~~~~-s~~~~ 107 (181)
T 2h17_A 53 ------IGSNVE--EIVI---NNTRFLMWDIGGQESL-------------RSSWNTYYTNTEFVIVVVDSTDRE-RISVT 107 (181)
T ss_dssp ------SSSSCE--EEEE---TTEEEEEEEESSSGGG-------------TCGGGGGGTTCCEEEEEEETTCTT-THHHH
T ss_pred ------CceeeE--EEEE---CCEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHH-HHHHH
Confidence 011111 1122 2368999999998543 244567889999888887654431 12222
Q ss_pred HHHHHHh-C---CCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREV-D---PTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~-~---~~~~r~i~VltK~D~~~~ 222 (441)
......+ . ..+.++++|+||+|+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 108 REELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp HHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 2222222 2 357899999999999764
No 127
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.30 E-value=1.4e-12 Score=115.37 Aligned_cols=117 Identities=21% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+++|++..+ +......+....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 42 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNY----------------------------------------- 42 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEE-----------------------------------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCccccee-----------------------------------------
Confidence 35799999999999999999998765 222111111000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-cccH--
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IATS-- 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~~-- 194 (441)
...+.+ ......+.|+||||.... ..+...|+..++++|++++..+.. +...
T Consensus 43 -----------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 97 (186)
T 1mh1_A 43 -----------SANVMV-DGKPVNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRA 97 (186)
T ss_dssp -----------EEEEEE-TTEEEEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHH
Confidence 000111 112246789999998543 244556888899888887654421 1111
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 98 ~~~~~~~~~~~-~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 98 KWYPEVRHHCP-NTPIILVGTKLDLRDD 124 (186)
T ss_dssp THHHHHHHHST-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhCC-CCCEEEEeEccccccc
Confidence 23344444444 7899999999999764
No 128
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.29 E-value=9.2e-13 Score=119.42 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=70.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRV 118 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 118 (441)
.+|+|+|.+|+|||||+|+|++..+ +......+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~------------------------------------------- 61 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF-PEVYVPTVFEN------------------------------------------- 61 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-C-------CCE-------------------------------------------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC-CCcCCCcccce-------------------------------------------
Confidence 5899999999999999999999875 21111100000
Q ss_pred cCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--HH
Q 013508 119 TGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--SD 195 (441)
Q Consensus 119 ~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~~ 195 (441)
+ ...+.+ ......+.|+||||.... ..+...|+..++++|++++..+.. +.. ..
T Consensus 62 ------~---~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~ 118 (207)
T 2fv8_A 62 ------Y---VADIEV-DGKQVELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEK 118 (207)
T ss_dssp ------E---EEEEEE-TTEEEEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHT
T ss_pred ------E---EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHH
Confidence 0 000111 111246899999997543 234556888899888887654421 111 12
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..++... .+.|+++|+||+|+.+.
T Consensus 119 ~~~~~~~~~-~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 119 WVPEVKHFC-PNVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHS-TTCCEEEEEECGGGGGC
T ss_pred HHHHHHHhC-CCCCEEEEEEchhhhcc
Confidence 333444433 26899999999999754
No 129
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.29 E-value=3.9e-12 Score=114.55 Aligned_cols=113 Identities=14% Similarity=0.201 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+++|++|||||||+++|++..+ +. ...|.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~--~~~t~------------------------------------------- 57 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRL-GQ--HVPTL------------------------------------------- 57 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC---------CCC-------------------------------------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC-Cc--cCCCC-------------------------------------------
Confidence 456899999999999999999998765 11 00111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
+ .. .-.+.+. ...+.++||||.... +.+...|++.++++|++++..+..- -...
T Consensus 58 ---~----~~--~~~~~~~---~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~D~~~~~s-~~~~ 111 (198)
T 1f6b_A 58 ---H----PT--SEELTIA---GMTFTTFDLGGHIQA-------------RRVWKNYLPAINGIVFLVDCADHER-LLES 111 (198)
T ss_dssp ---C----CS--CEEEEET---TEEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGG-HHHH
T ss_pred ---C----ce--eEEEEEC---CEEEEEEECCCcHhh-------------HHHHHHHHhcCCEEEEEEECCCHHH-HHHH
Confidence 0 00 1111121 257899999997542 2356678889999888886544321 1122
Q ss_pred HHHHHHh----CCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~----~~~~~r~i~VltK~D~~~ 221 (441)
......+ ...+.|+++|.||+|+..
T Consensus 112 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 112 KEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 2222222 235789999999999975
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=1.8e-11 Score=111.60 Aligned_cols=115 Identities=21% Similarity=0.359 Sum_probs=72.4
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+.|+|+|++|+|||||+|+|++..+.+. ..+..|+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~---~~~~~~~~-------------------------------------- 48 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLS-------------------------------------- 48 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEE--------------------------------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe---eeecCceE--------------------------------------
Confidence 4678999999999999999999999875221 11222321
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcC----CCeEEEEeccC-ccc
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEK----PNSVILAISPA-NQD 190 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~----~~~iil~v~~a-~~~ 190 (441)
+ . ......+.++||||.... +.++..|+.. ++++|++++.. +.+
T Consensus 49 ----~--~------------~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 97 (218)
T 1nrj_B 49 ----A--A------------DYDGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFMVDSTVDPK 97 (218)
T ss_dssp ----E--T------------TGGGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEEEETTSCTT
T ss_pred ----E--E------------EeeCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEEEECCCChH
Confidence 0 0 002357999999998553 2344455544 78888877655 211
Q ss_pred cccHHHHH----HHHHh---CCCCCcEEEEeccCCCCCCc
Q 013508 191 IATSDAMK----LAREV---DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 191 ~~~~~~l~----l~~~~---~~~~~r~i~VltK~D~~~~~ 223 (441)
. -....+ +.... .+.+.|+++|+||+|+....
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 98 K-LTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp C-CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred H-HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 1 111112 22211 34678999999999998654
No 131
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.28 E-value=8.2e-12 Score=111.60 Aligned_cols=113 Identities=14% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+..+|+++|++|+|||||+++|++..+ +. ...|..+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~-~~--~~~t~~~~---------------------------------------- 58 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRL-AT--LQPTWHPT---------------------------------------- 58 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCC-CC--CCCCCSCE----------------------------------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-Cc--cccCCCCC----------------------------------------
Confidence 446899999999999999999998775 21 01111111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.-. +.. +...+.++||||.... +.+...|++.++++|++++..+..- -...
T Consensus 59 ------------~~~--~~~-~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~ 109 (190)
T 1m2o_B 59 ------------SEE--LAI-GNIKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPER-FDEA 109 (190)
T ss_dssp ------------EEE--EEE-TTEEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGG-HHHH
T ss_pred ------------eEE--EEE-CCEEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHH-HHHH
Confidence 001 111 1257899999998653 2345678889998888876544321 1222
Q ss_pred HHHHHHh----CCCCCcEEEEeccCCCCC
Q 013508 197 MKLAREV----DPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 197 l~l~~~~----~~~~~r~i~VltK~D~~~ 221 (441)
......+ ...+.|+++|.||+|+..
T Consensus 110 ~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 110 RVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 2222222 235789999999999976
No 132
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.27 E-value=2.3e-12 Score=117.57 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+ +......+....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~----------------------------------------- 71 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERY----------------------------------------- 71 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEE-----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeE-----------------------------------------
Confidence 35899999999999999999998775 322111111000
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--H
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT--S 194 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~--~ 194 (441)
...+.+. .....+.|+||||.... ..+...|+..++++|++++..+.. +.. .
T Consensus 72 -----------~~~~~~~-~~~~~l~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 126 (214)
T 2j1l_A 72 -----------MVNLQVK-GKPVHLHIWDTAGQDDY-------------DRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126 (214)
T ss_dssp -----------EEEEEET-TEEEEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHH
T ss_pred -----------EEEEEEC-CEEEEEEEEECCCchhh-------------hHHHHHHhccCCEEEEEEECcCHHHHHHHHH
Confidence 0001111 11236899999996442 355667888899888877654321 111 1
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..++... .+.|+++|+||+|+....
T Consensus 127 ~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 127 RWYPEVNHFC-KKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp THHHHHHHHC-SSCCEEEEEECGGGGSCH
T ss_pred HHHHHHHHhC-CCCCEEEEEEChhhhccc
Confidence 2333344333 368999999999998653
No 133
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=5.7e-13 Score=132.88 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEE
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (441)
+|++||.+|+|||||+|+|+|..........||+.|+.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~ 39 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANV 39 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCce
Confidence 69999999999999999999987323344456776654
No 134
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.27 E-value=7.5e-12 Score=114.51 Aligned_cols=150 Identities=18% Similarity=0.272 Sum_probs=85.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|++++|||||++.+++..| +... .||.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~f-~~~~-----~~Ti------------------------------------------ 46 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDSF-DNTY-----QATI------------------------------------------ 46 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC-C------------------------------------------------------
T ss_pred EEEEECcCCcCHHHHHHHHHhCCC-CCCc-----CCcc------------------------------------------
Confidence 799999999999999999997765 2211 1110
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-c-ccHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAM 197 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~-~~~~~l 197 (441)
| ..+.. ..+ ........+.||||+|.... +.+...|++.+++++++.+..+.. + ....++
T Consensus 47 g--~d~~~--k~~-~~~~~~v~l~iwDtaGqe~~-------------~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~ 108 (216)
T 4dkx_A 47 G--IDFLS--KTM-YLEDRTIRLQLWDTAGLERF-------------RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWI 108 (216)
T ss_dssp -----CEE--EEE-ECSSCEEEEEEECCSCTTTC-------------GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred c--eEEEE--EEE-EecceEEEEEEEECCCchhh-------------hhHHHHHhccccEEEEEeecchhHHHHHHHHHH
Confidence 0 00000 011 11122346889999997553 467788999999888887654421 1 113344
Q ss_pred HHHHHhCCCCCcEEEEeccCCCCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccC
Q 013508 198 KLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRN 255 (441)
Q Consensus 198 ~l~~~~~~~~~r~i~VltK~D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~ 255 (441)
..++.....+.++|+|.||+|+.+......+-...........|+.+.+.++.+++..
T Consensus 109 ~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 109 DDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp HHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred HHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHH
Confidence 4444444557899999999998764321111111011122334666655555444433
No 135
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.26 E-value=8.4e-12 Score=120.47 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc-HHHHHHHHHhC--CCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-SDAMKLAREVD--PTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-~~~l~l~~~~~--~~~~r~i~Vl 214 (441)
...+.+|||||.... .......+...|+++++++|++++..+... .. ..+...+..+. ..+.|+++|+
T Consensus 51 ~~~l~i~Dt~G~~~~--------~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVF--------MENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp TEEEEEEEECCSHHH--------HHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ceEEEEEECCCcHHH--------hhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 467999999997432 111223567788899999888886654321 11 11122222221 2368999999
Q ss_pred ccCCCCC
Q 013508 215 TKLDLMD 221 (441)
Q Consensus 215 tK~D~~~ 221 (441)
||+|+..
T Consensus 123 NK~Dl~~ 129 (307)
T 3r7w_A 123 HKMDLVQ 129 (307)
T ss_dssp ECGGGSC
T ss_pred ecccccc
Confidence 9999986
No 136
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.25 E-value=1.1e-12 Score=115.79 Aligned_cols=118 Identities=25% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||++++++..+ +.... |+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~-----~t~--------------------------------------- 41 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-PTDYV-----PTV--------------------------------------- 41 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C---------------------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-----Cee---------------------------------------
Confidence 456899999999999999999998764 22111 110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-- 193 (441)
+ ..+... + .+ ......+.|+||||.... ..+...|++.++++|++++..+... ..
T Consensus 42 ---~--~~~~~~-~--~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 99 (182)
T 3bwd_D 42 ---F--DNFSAN-V--VV-NGATVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVS 99 (182)
T ss_dssp --------CBCC-C--C--------CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred ---e--eeEEEE-E--EE-CCEEEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 0 000000 0 01 112346889999997543 2455678888998888876544221 11
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++...+ +.|+++|+||+|+.+.
T Consensus 100 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 100 KKWIPELKHYAP-GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEechhhhcC
Confidence 123344444433 7899999999998754
No 137
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.25 E-value=2e-12 Score=117.37 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++|+|||||++++++..+ +......+....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 46 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNF---------------------------------------- 46 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCE----------------------------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeE----------------------------------------
Confidence 346899999999999999999998765 322111111110
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-- 193 (441)
...+.+ ......+.|+||||.... ..+...|+.++|.+|++++..+.. +..
T Consensus 47 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 100 (212)
T 2j0v_A 47 ------------SANVAV-DGQIVNLGLWDTAGQEDY-------------SRLRPLSYRGADIFVLAFSLISKASYENVL 100 (212)
T ss_dssp ------------EEEEEC-SSCEEEEEEECCCCCCCC-------------CC--CGGGTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCcHHH-------------HHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 000111 112247899999998653 234556888999988887654422 111
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++...+ +.|+++|+||+|+.+.
T Consensus 101 ~~~~~~~~~~~~-~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 101 KKWMPELRRFAP-NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HTHHHHHHHHCT-TCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHhCC-CCCEEEEEeCHHhhhC
Confidence 123344444443 7899999999998754
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.25 E-value=1.9e-11 Score=123.81 Aligned_cols=130 Identities=22% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..++|+++|++|||||||+|+|+|... ..++..|.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~-----~~v~~~~g---------------------------------------- 213 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKER-----ALVSPIPG---------------------------------------- 213 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTT-----EEECCCC-----------------------------------------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcc-----cccCCCCC----------------------------------------
Confidence 467999999999999999999999875 22222221
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
.+.... .-.+.+ +..++.++||||+.+..... ++.........+..++..++.++++++.. ..... ..
T Consensus 214 ----tT~d~~--~~~i~~---~g~~~~l~Dt~G~~~~~~~~-~~~~e~~~~~~~~~~i~~ad~vllv~d~~-~~~~~-~~ 281 (439)
T 1mky_A 214 ----TTRDPV--DDEVFI---DGRKYVFVDTAGLRRKSRVE-PRTVEKYSNYRVVDSIEKADVVVIVLDAT-QGITR-QD 281 (439)
T ss_dssp ---------C--CEEEEE---TTEEEEESSCSCC------------CCSCCHHHHHHHHHCSEEEEEEETT-TCCCH-HH
T ss_pred ----CcCCce--EEEEEE---CCEEEEEEECCCCccccccc-hhhHHHHHHHHHHHHHhhCCEEEEEEeCC-CCCCH-HH
Confidence 000000 001112 22368899999985432100 00000000012346777888877776543 33322 23
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..++..+...+.++++|+||+|+.+..
T Consensus 282 ~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 282 QRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred HHHHHHHHHcCCCEEEEEECccCCCch
Confidence 345555555689999999999998654
No 139
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.89 E-value=6.3e-13 Score=120.09 Aligned_cols=69 Identities=25% Similarity=0.221 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH-HHHHHhCCC--CCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM-KLAREVDPT--GERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l-~l~~~~~~~--~~r~i~VltK 216 (441)
..+.|+||||.... ..+...|+.++|++|++++..+... -.... .+...+... +.|+++|+||
T Consensus 78 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l~~~~~~~piilv~NK 143 (204)
T 3th5_A 78 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVFLICFSLVSPAS-FENVRAKWYPEVRHHCPNTPIILVGTK 143 (204)
Confidence 46779999997542 3566778888998888776433211 11111 222223222 6899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (204)
T 3th5_A 144 LDLRDD 149 (204)
Confidence 999754
No 140
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.24 E-value=5.7e-12 Score=114.98 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+++|++..+ +......+....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~-~~~~~~t~~~~~---------------------------------------- 64 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENY---------------------------------------- 64 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEE----------------------------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC-CCCcCCeeeeeE----------------------------------------
Confidence 456899999999999999999998875 221111110000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c--c
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A--T 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~--~ 193 (441)
...+.+ ......+.|+||||.... ..+...|++.++++|++++..+... . .
T Consensus 65 ------------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 118 (214)
T 3q3j_B 65 ------------TACLET-EEQRVELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSAL 118 (214)
T ss_dssp ------------EEEEEC---CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHH
Confidence 000011 112346899999997543 2456678899999888886554321 1 1
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++... .+.|+++|.||+|+.+.
T Consensus 119 ~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 119 KKWRTEILDYC-PSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp THHHHHHHHHC-TTSEEEEEEECGGGGGC
T ss_pred HHHHHHHHHhC-CCCCEEEEEEChhhccc
Confidence 23444455444 36899999999999753
No 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.24 E-value=3.8e-12 Score=116.50 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-c-cHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-A-TSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~-~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+.|+||||.... ..+...|+.+++++|++++..+... . ...++..+.... .+.|+++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~ 129 (221)
T 3gj0_A 64 IKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKV 129 (221)
T ss_dssp EEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECT
T ss_pred EEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECC
Confidence 47899999996543 2345678889998888876544211 1 122333333333 368999999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+.+..
T Consensus 130 Dl~~~~ 135 (221)
T 3gj0_A 130 DIKDRK 135 (221)
T ss_dssp TSSSCS
T ss_pred cccccc
Confidence 997543
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.24 E-value=8.2e-12 Score=121.72 Aligned_cols=113 Identities=18% Similarity=0.241 Sum_probs=68.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhhhc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDRVT 119 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 119 (441)
+|+|+|.+|+|||||+|+|++..+ +.. ..|.....
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~-~~~--~pT~~~~~------------------------------------------ 201 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI-VTT--IPTIGFNV------------------------------------------ 201 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC-EEE--EEETTEEE------------------------------------------
T ss_pred eEEEECCCCccHHHHHHHHhCCCC-CCc--ccccceEE------------------------------------------
Confidence 799999999999999999998875 211 11211100
Q ss_pred CCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHH
Q 013508 120 GKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKL 199 (441)
Q Consensus 120 g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l 199 (441)
. .+.. ....+.|+||||.... ..+...|++.+|.+|++++..+...-..-...+
T Consensus 202 ----------~--~~~~-~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~ 255 (329)
T 3o47_A 202 ----------E--TVEY-KNISFTVWDVGGQDKI-------------RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL 255 (329)
T ss_dssp ----------E--EEEE-TTEEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHH
T ss_pred ----------E--EEec-CcEEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCchHHHHHHHHHH
Confidence 0 1111 2357899999995432 345678888999888887654322111111112
Q ss_pred HHHhC---CCCCcEEEEeccCCCCCCc
Q 013508 200 AREVD---PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 200 ~~~~~---~~~~r~i~VltK~D~~~~~ 223 (441)
...+. ..+.|+|+|+||+|+.+..
T Consensus 256 ~~~~~~~~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 256 MRMLAEDELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp HHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHhhhccCCCeEEEEEECccCCccc
Confidence 22222 2378999999999998654
No 143
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.23 E-value=2e-12 Score=116.96 Aligned_cols=119 Identities=20% Similarity=0.146 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
+..+|+|+|.+|+|||||++++++..+.. .....+.....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~--------------------------------------- 68 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYS--------------------------------------- 68 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCCC--CCCCSEEEEE---------------------------------------
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCCC-CcCCeecceeE---------------------------------------
Confidence 45689999999999999999999876521 11111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS-- 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~-- 194 (441)
..+.+ ......+.|+||||.... ..+...|+..+|++|++++..+......
T Consensus 69 -------------~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 121 (204)
T 4gzl_A 69 -------------ANVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFENVR 121 (204)
T ss_dssp -------------EEEEC-C-CEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred -------------EEEEE-CCEEEEEEEEECCCchhh-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHH
Confidence 00001 112235679999998543 2455668889999888876544221111
Q ss_pred -HHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 195 -DAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 195 -~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.++..++... .+.|+++|+||+|+.+..
T Consensus 122 ~~~~~~~~~~~-~~~piilv~nK~Dl~~~~ 150 (204)
T 4gzl_A 122 AKWYPEVRHHC-PNTPIILVGTKLDLRDDK 150 (204)
T ss_dssp HTHHHHHHHHC-SSCCEEEEEECHHHHTCH
T ss_pred HHHHHHHHHhC-CCCCEEEEEechhhccch
Confidence 2333444433 368999999999998654
No 144
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.22 E-value=2.2e-11 Score=107.06 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+|+|+|++|+|||||+|++++..+
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 35799999999999999999999876
No 145
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.22 E-value=8.5e-12 Score=110.67 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|++|+|||||+|+|++..+ +.... .|.....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~-~t~~~~~--------------------------------------- 44 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENY--------------------------------------- 44 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEE---------------------------------------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCC-CccceeE---------------------------------------
Confidence 346899999999999999999999875 32211 1111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-cc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-AT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~-- 193 (441)
...+.+ ......+.|+||||.... ..+...|+..++++|++++..+... ..
T Consensus 45 ------------~~~~~~-~~~~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~ 98 (184)
T 1m7b_A 45 ------------TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 98 (184)
T ss_dssp ------------EEEEEC-SSCEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHH
Confidence 000011 112346899999997542 2344567888998888876543211 11
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++...+ +.|+++|.||+|+.+.
T Consensus 99 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 99 KKWKGEIQEFCP-NTKMLLVGCKSDLRTD 126 (184)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHCC-CCCEEEEEEcchhhcc
Confidence 122233444433 6899999999999753
No 146
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.22 E-value=6.1e-11 Score=123.22 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=58.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...+.++||||.... ..+...|+++++++|++++.++ .-....++..++...+ +.|+|+|+||+|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d~ii~V~D~s~-~~~~~~~~~~l~~~~~-~~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSSVYMLLLDSRT-DSNKHYWLRHIEKYGG-KSPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSEEEEEEECGGG-GGGHHHHHHHHHHHSS-SCCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCcEEEEEEeCCC-chhHHHHHHHHHHhCC-CCCEEEEEECCC
Confidence 457899999996432 1234466778888877775543 3223445555555544 589999999999
Q ss_pred CCCCcCcHHHHHcCcccccCCCeEEEEeCChhhhccCCcHHH
Q 013508 219 LMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINRNIDMIV 260 (441)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s~~~~~~~~~~~~ 260 (441)
+.+......+.+.......+..++.+.+.++.+++..+..+.
T Consensus 162 l~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~ 203 (535)
T 3dpu_A 162 ENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLK 203 (535)
T ss_dssp TCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHH
Confidence 986543212222211222333466665555555544444333
No 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.20 E-value=3.3e-11 Score=107.10 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
...+|+|+|++|+|||||+|++++..+
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345899999999999999999998875
No 148
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.19 E-value=1.5e-11 Score=111.42 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+|+|.+|+|||||+|+|++..+ +.... .|.....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~-~t~~~~~--------------------------------------- 65 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYV-PTVFENY--------------------------------------- 65 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCC-CCSEEEE---------------------------------------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcC-CccceeE---------------------------------------
Confidence 456899999999999999999999875 22111 1111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc--
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-- 193 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-- 193 (441)
...+.+ ......+.|+||||.... ..+...|+..++++|++++..+.. +..
T Consensus 66 ------------~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~ 119 (205)
T 1gwn_A 66 ------------TASFEI-DTQRIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVL 119 (205)
T ss_dssp ------------EEEEES-SSSEEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred ------------EEEEEE-CCEEEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHH
Confidence 000011 112346899999997543 234556888899888887654421 111
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++...+ +.|+++|.||+|+.+.
T Consensus 120 ~~~~~~i~~~~~-~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 120 KKWKGEIQEFCP-NTKMLLVGCKSDLRTD 147 (205)
T ss_dssp HTHHHHHHHHCT-TCEEEEEEECGGGGGC
T ss_pred HHHHHHHHHHCC-CCCEEEEEechhhccc
Confidence 122333444333 6899999999999753
No 149
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.19 E-value=1.3e-10 Score=119.52 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|.+|+|||||+|+|++..+ +. ...|..+..
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~---------------------------------------- 358 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNV---------------------------------------- 358 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEE----------------------------------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeE----------------------------------------
Confidence 35899999999999999999999874 21 112222211
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAM 197 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l 197 (441)
-.+.. ....+.|+||||.... +.+...|++.+|.+|++++..+.. .-....
T Consensus 359 --------------~~~~~-~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~ad~~i~V~D~~~~~-s~~~~~ 409 (497)
T 3lvq_E 359 --------------ETVTY-KNVKFNVWDVGGQDKI-------------RPLWRHYYTGTQGLIFVVDCADRD-RIDEAR 409 (497)
T ss_dssp --------------EEEES-SSCEEEEEEECCCGGG-------------SGGGGGGGTTCCEEEEEEETTCGG-GHHHHH
T ss_pred --------------EEEEe-CCEEEEEEECCCcHHH-------------HHHHHHHhccCCEEEEEEECcchh-HHHHHH
Confidence 01222 3357999999997543 245678899999888887654432 112222
Q ss_pred HHHHHh----CCCCCcEEEEeccCCCCCC
Q 013508 198 KLAREV----DPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 198 ~l~~~~----~~~~~r~i~VltK~D~~~~ 222 (441)
.....+ ...+.|+|+|+||+|+.+.
T Consensus 410 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 410 QELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp HHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred HHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 222222 2247899999999999764
No 150
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.18 E-value=3.1e-11 Score=109.99 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc-HHHHHHHHHh-CCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT-SDAMKLAREV-DPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~-~~~l~l~~~~-~~~~~r~i~VltK 216 (441)
..+.++||+|... .. +.+...|++.++++|++++-.+. .+.. ..+...+... ...+.|+|+|.||
T Consensus 87 ~~l~~~Dt~g~~~---------~~---~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK 154 (211)
T 2g3y_A 87 ATIILLDMWENKG---------EN---EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154 (211)
T ss_dssp EEEEEECCTTTTH---------HH---HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEEC
T ss_pred eEEEEeecCCCcc---------hh---hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3578999999632 11 33455677788888887754332 1111 1122222222 2346899999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 155 ~DL~~~ 160 (211)
T 2g3y_A 155 SDLVRC 160 (211)
T ss_dssp TTCGGG
T ss_pred hHHhcC
Confidence 999753
No 151
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1.1e-10 Score=122.65 Aligned_cols=149 Identities=15% Similarity=0.176 Sum_probs=79.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|++||.+|+|||||+|+|++... .+..+.. ..+.......++.-.++..+.+....+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~-----~i~~~~i------------~~~~~~~~~~g~~~~~~a~~~d~~~~e-- 226 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLN-----IVNQSQL------------RKLQRESETMGKSSFKFAWIMDQTNEE-- 226 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSS-----CSCCHHH------------HHHHHHSSCSSSSCCSSSHHHHHHHHH--
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcC-----CccHHHH------------HHHHhhhhhccccccceeeeeccchhh--
Confidence 456899999999999999999998743 1111100 000000001111111222333332222
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-----
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI----- 191 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~----- 191 (441)
+..|.+...... .+.. ....++||||||..+. ...+..++..+|++|++|++.+..+
T Consensus 227 ~~~GiTid~~~~----~~~~-~~~~~~iiDTPG~e~f-------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~ 288 (611)
T 3izq_1 227 RERGVTVSICTS----HFST-HRANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFD 288 (611)
T ss_dssp HHTTTCCSCSCC----EEEC-SSCEEEEEECCSSSCH-------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCC
T ss_pred hhCCeeEeeeeE----EEec-CCceEEEEECCCCccc-------------HHHHHHHHhhcCceEEEEECCCCcccccch
Confidence 223433222221 2333 3468999999998442 3556678888998888886543211
Q ss_pred ccHHHHHHHHHhCCCC-CcEEEEeccCCCCCC
Q 013508 192 ATSDAMKLAREVDPTG-ERTFGVLTKLDLMDK 222 (441)
Q Consensus 192 ~~~~~l~l~~~~~~~~-~r~i~VltK~D~~~~ 222 (441)
......+.+..+...+ .++|+|+||+|+.+.
T Consensus 289 ~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 289 LDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp TTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEEecccccch
Confidence 0112222222333334 459999999999863
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.16 E-value=5.8e-12 Score=129.64 Aligned_cols=117 Identities=16% Similarity=0.279 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..|.|+|+|++++|||||+++|++..+.....+..|...
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i----------------------------------------- 41 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHI----------------------------------------- 41 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCT-----------------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEE-----------------------------------------
Confidence 578999999999999999999998765222212222111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
... .+..++...++||||||..... .+...++..+|.+||+++. +.+. ....
T Consensus 42 ---------~~~----~v~~~~g~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~vILVVDa-~dg~-~~qt 93 (537)
T 3izy_P 42 ---------GAF----LVSLPSGEKITFLDTPGHAAFS-------------AMRARGTQVTDIVILVVAA-DDGV-MKQT 93 (537)
T ss_dssp ---------TSC----CBCSSCSSCCBCEECSSSCCTT-------------TSBBSSSBSBSSCEEECBS-SSCC-CHHH
T ss_pred ---------eEE----EEEeCCCCEEEEEECCChHHHH-------------HHHHHHHccCCEEEEEEEC-CCCc-cHHH
Confidence 110 0222334579999999975432 3344667788988887754 4333 3444
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.+.+..+...+.|+|+|+||+|+.+.
T Consensus 94 ~e~l~~~~~~~vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 94 VESIQHAKDAHVPIVLAINKCDKAEA 119 (537)
T ss_dssp HHHHHHHHTTTCCEEECCBSGGGTTT
T ss_pred HHHHHHHHHcCCcEEEEEeccccccc
Confidence 45555566678899999999999753
No 153
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.15 E-value=2.4e-11 Score=117.97 Aligned_cols=118 Identities=23% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
...+|+++|.+|+|||||++++++..+ +......+......
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~-------------------------------------- 194 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSA-------------------------------------- 194 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEE--------------------------------------
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEE--------------------------------------
Confidence 567899999999999999999998765 22222222111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-ccH-
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATS- 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~~- 194 (441)
.+.+ ......+.|+||||.... ..+...|+..+|++|++++..+... ...
T Consensus 195 --------------~~~~-~~~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 246 (332)
T 2wkq_A 195 --------------NVMV-DGKPVNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVR 246 (332)
T ss_dssp --------------EEEE-TTEEEEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHH
T ss_pred --------------EEEE-CCEEEEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHH
Confidence 0001 111235679999998543 2445678889998888876544221 111
Q ss_pred -HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 -DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 -~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.++..++...+ +.|+++|+||+|+.+.
T Consensus 247 ~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 247 AKWYPEVRHHCP-NTPIILVGTKLDLRDD 274 (332)
T ss_dssp HTHHHHHHHHCT-TSCEEEEEECHHHHTC
T ss_pred HHHHHHHHhhCC-CCcEEEEEEchhcccc
Confidence 22334444444 7899999999998754
No 154
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.13 E-value=1.8e-10 Score=115.38 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-c-ccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-I-ATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~-~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..++||||||..+. ......++..+|.+|+++++.+.. . .+.+.+.+++.+. ..++|+|+||+
T Consensus 75 ~~~~iiDtPGh~~~-------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHEVL-------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCGGG-------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECG
T ss_pred ceEEEEECCCcHHH-------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECc
Confidence 47899999996432 355667788899888887654322 1 1233444555443 24799999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+.+..
T Consensus 140 Dl~~~~ 145 (403)
T 3sjy_A 140 DVVSKE 145 (403)
T ss_dssp GGSCHH
T ss_pred cccchH
Confidence 998653
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.12 E-value=2e-10 Score=116.20 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=44.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--------ccHHHHHHHHHhCCCCCc-
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDAMKLAREVDPTGER- 209 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--------~~~~~l~l~~~~~~~~~r- 209 (441)
...++||||||..+. ...+..++..+|++||+|++..... .+.+.+.++. ..+.+
T Consensus 94 ~~~~~iiDTPGh~~f-------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~---~~~v~~ 157 (439)
T 3j2k_7 94 KKHFTILDAPGHKSF-------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK---TAGVKH 157 (439)
T ss_pred CeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH---HcCCCe
Confidence 458999999997432 3455567788998888876543221 2233333333 34666
Q ss_pred EEEEeccCCCCC
Q 013508 210 TFGVLTKLDLMD 221 (441)
Q Consensus 210 ~i~VltK~D~~~ 221 (441)
+|+|+||+|+..
T Consensus 158 iIvviNK~Dl~~ 169 (439)
T 3j2k_7 158 LIVLINKMDDPT 169 (439)
T ss_pred EEEEeecCCCcc
Confidence 899999999964
No 156
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.12 E-value=6.1e-11 Score=121.35 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
...++||||||..+ ....+..++..+|.+|+++++ +.+.. +.+.+.+++. .+.|.|+|+||
T Consensus 72 ~~~i~iiDtPGh~~-------------~~~~~~~~~~~aD~~ilVvda-~~g~~~qt~e~l~~~~~---~~ip~IvviNK 134 (482)
T 1wb1_A 72 NYRITLVDAPGHAD-------------LIRAVVSAADIIDLALIVVDA-KEGPKTQTGEHMLILDH---FNIPIIVVITK 134 (482)
T ss_dssp TEEEEECCCSSHHH-------------HHHHHHHHTTSCCEEEEEEET-TTCSCHHHHHHHHHHHH---TTCCBCEEEEC
T ss_pred CEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEec-CCCccHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 35799999999632 134556778889988888754 33321 2233334443 47888999999
Q ss_pred CCCCCC
Q 013508 217 LDLMDK 222 (441)
Q Consensus 217 ~D~~~~ 222 (441)
+|+.+.
T Consensus 135 ~Dl~~~ 140 (482)
T 1wb1_A 135 SDNAGT 140 (482)
T ss_dssp TTSSCH
T ss_pred CCcccc
Confidence 999863
No 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=115.22 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCCcCccC-CCCccHHHHHHHHHHHhhcCC-------------CeEEEEeccCccccccHHHHHHHHHhCC
Q 013508 140 VNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEKP-------------NSVILAISPANQDIATSDAMKLAREVDP 205 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iil~v~~a~~~~~~~~~l~l~~~~~~ 205 (441)
..++++||||+.+.... ..-..+...+.+....|+... ++++++|.++...+... ...+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~-d~~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL-DVAFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHH-HHHHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchh-HHHHHHHhc-
Confidence 36899999999553211 001223333334444565432 35777776655555333 335666665
Q ss_pred CCCcEEEEeccCCCCCCc
Q 013508 206 TGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~~~ 223 (441)
.+.++|+|+||+|+....
T Consensus 173 ~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp S-SCEEEEEECCSSSCHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 578999999999998654
No 158
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.12 E-value=2.4e-10 Score=112.09 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+.|+++|.+|||||||+|+|+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999974
No 159
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.11 E-value=2.2e-10 Score=118.25 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=81.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..+.|+++|.+|||||||+|+|++..-.....+.+.... ..+. .+.++...+.
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~--------------------~~~~------~~~d~~~~e~- 64 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRK--------------------AARH------ATSDWMELEK- 64 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC------------------------C------CHHHHHHHHH-
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccc--------------------cccc------eecccchhhh-
Confidence 567999999999999999999985432110000000000 0000 1112221111
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
..|. .+......+. . ....++||||||..+. ...+..+++.+|++|+++++.. +. ....
T Consensus 65 -~~Gi--Ti~~~~~~~~--~-~~~~i~liDTPG~~df-------------~~~~~~~l~~aD~allVvDa~~-g~-~~~t 123 (528)
T 3tr5_A 65 -QRGI--SVTTSVMQFP--Y-KDYLINLLDTPGHADF-------------TEDTYRTLTAVDSALMVIDAAK-GV-EPRT 123 (528)
T ss_dssp -HHCC--SSSSSEEEEE--E-TTEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CS-CHHH
T ss_pred -cCCe--eEEEeEEEEE--e-CCEEEEEEECCCchhH-------------HHHHHHHHHhCCEEEEEEeCCC-CC-CHHH
Confidence 1231 2222233322 2 3457999999998664 2457788999999888876544 33 3344
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..+.+.+...+.|+++|+||+|+...
T Consensus 124 ~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 124 IKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp HHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 45556666678999999999999643
No 160
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.11 E-value=1.1e-10 Score=104.85 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..+|+|+|+.|||||||+++|+|..+.+......+..+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~----------------------------------------- 43 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA----------------------------------------- 43 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEE-----------------------------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE-----------------------------------------
Confidence 568999999999999999999998752111111111010
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-HH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT-SD 195 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~-~~ 195 (441)
.-.+.+.+ ....+.++||||.... +.+...|+..+++++++++..+.. +.. ..
T Consensus 44 -----------~~~i~~~g-~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~ 98 (199)
T 2f9l_A 44 -----------TRSIQVDG-KTIKAQIWDTAGQERY-------------RRITSAYYRGAVGALLVYDIAKHLTYENVER 98 (199)
T ss_dssp -----------EEEEEETT-EEEEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHH
T ss_pred -----------EEEEEECC-EEEEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEEEECcCHHHHHHHHH
Confidence 00111111 1235778999997542 233456677788877766543321 111 12
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
++..++.....+.+++.|+||+|+...
T Consensus 99 ~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 99 WLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHhcCCCCeEEEEEECcccccc
Confidence 233333334457899999999998643
No 161
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.10 E-value=8.1e-11 Score=120.67 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred cCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--------ccHHH
Q 013508 125 ISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--------ATSDA 196 (441)
Q Consensus 125 ~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--------~~~~~ 196 (441)
++.+.....+... ...++||||||..+. ...+..++..+|++|+++++.+... .+.+.
T Consensus 97 iTi~~~~~~~~~~-~~~~~iiDTPG~~~f-------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~ 162 (483)
T 3p26_A 97 VTVSICTSHFSTH-RANFTIVDAPGHRDF-------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEH 162 (483)
T ss_dssp SSCCCCEEEEECS-SCEEEEECCCCCGGG-------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHH
T ss_pred cceEeeeEEEecC-CceEEEEECCCcHHH-------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHH
Confidence 3333333334443 468999999998542 3566778899999888886544211 12222
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+.++..+. -.++|+|+||+|+.+.
T Consensus 163 ~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 163 MLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred HHHHHHcC--CCcEEEEEECcCcccc
Confidence 33344332 2469999999999863
No 162
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.10 E-value=1.1e-10 Score=104.43 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc-cccc-HHHHHHHHHh-CCCCCcEEEEeccC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ-DIAT-SDAMKLAREV-DPTGERTFGVLTKL 217 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~-~~~~-~~~l~l~~~~-~~~~~r~i~VltK~ 217 (441)
.+.++||+|.... . +.+...|++.++++|++++..+. .+.. ..+...+... ...+.++++|.||+
T Consensus 57 ~l~~~Dt~~~~~~-----~-------~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGE-----N-------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcch-----h-------hhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 5678999996431 0 12334566678888777654332 1111 2233333333 34478999999999
Q ss_pred CCCC
Q 013508 218 DLMD 221 (441)
Q Consensus 218 D~~~ 221 (441)
|+..
T Consensus 125 Dl~~ 128 (192)
T 2cjw_A 125 DLVR 128 (192)
T ss_dssp TCGG
T ss_pred hhhc
Confidence 9864
No 163
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.08 E-value=2.3e-11 Score=107.93 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=41.0
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc--cc-cHHHHHHHHHhCCCCCcEEEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--IA-TSDAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~--~~-~~~~l~l~~~~~~~~~r~i~Vlt 215 (441)
...+.++||||.... ..+...|++..+.++++++..+.. +. ...++..+.... .+.|+++|.|
T Consensus 55 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~n 120 (184)
T 2zej_A 55 DLVLNVWDFAGREEF-------------YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGT 120 (184)
T ss_dssp -CEEEEEEECSHHHH-------------HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEE
T ss_pred ceEEEEEecCCCHHH-------------HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEE
Confidence 347889999997432 234556777778777665433211 11 112222222222 2678999999
Q ss_pred cCCCCCC
Q 013508 216 KLDLMDK 222 (441)
Q Consensus 216 K~D~~~~ 222 (441)
|+|+.+.
T Consensus 121 K~Dl~~~ 127 (184)
T 2zej_A 121 HLDVSDE 127 (184)
T ss_dssp CGGGCCH
T ss_pred CCCcccc
Confidence 9998754
No 164
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.03 E-value=3.9e-10 Score=117.56 Aligned_cols=134 Identities=17% Similarity=0.245 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..+.|+++|+.++|||||+++|++.. +..++.... . .+.+....+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~t------g~i~~~~~~---------------------~------~~~D~~~~E-- 49 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYT------GAISEREKR---------------------E------QLLDTLDVE-- 49 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHH------TC----------------------------------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcc------CCccccccc---------------------c------cccccchhh--
Confidence 46789999999999999999998632 111110000 0 000000000
Q ss_pred hhcCCCCCcCCcceEEEEecCC--CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPN--VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~--~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
+..| ..+....+.+.+...+ ...++||||||..+. ...+..++...|.+|++|++. .+...+
T Consensus 50 rerG--ITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aILVVDa~-~gv~~q 113 (600)
T 2ywe_A 50 RERG--ITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALLLIDAS-QGIEAQ 113 (600)
T ss_dssp --------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEEEEETT-TBCCHH
T ss_pred hccc--ceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEEEEECC-CCccHH
Confidence 0011 2233334444444322 257889999998653 245667788899888877554 333222
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...........+.|.|+|+||+|+...
T Consensus 114 -t~~~~~~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 114 -TVANFWKAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp -HHHHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred -HHHHHHHHHHCCCCEEEEEeccCcccc
Confidence 222222223357899999999999754
No 165
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.03 E-value=1.2e-10 Score=118.88 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..|.|+++|+.++|||||+++|.+..+.....+..|...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i----------------------------------------- 41 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHI----------------------------------------- 41 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCS-----------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeE-----------------------------------------
Confidence 578999999999999999999987654211111111100
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc--ccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI--ATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~--~~~ 194 (441)
... .+.. +...++||||||..... .+...++..+|.+||+++. +.+. .+.
T Consensus 42 ---------~~~----~v~~-~~~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVda-~~g~~~qT~ 93 (501)
T 1zo1_I 42 ---------GAY----HVET-ENGMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVAA-DDGVMPQTI 93 (501)
T ss_dssp ---------SCC----CCCT-TSSCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEET-TTBSCTTTH
T ss_pred ---------EEE----EEEE-CCEEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEeec-ccCccHHHH
Confidence 000 0111 23579999999986542 2234567778988888854 3322 233
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
+.+..++ ..+.|+|+|+||+|+...
T Consensus 94 e~l~~~~---~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 94 EAIQHAK---AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp HHHHHHH---HTTCCEEEEEECSSSSTT
T ss_pred HHHHHHH---hcCceEEEEEEecccccc
Confidence 3444443 347889999999999753
No 166
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.02 E-value=9.4e-10 Score=113.60 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. ...+..++..+|++|+++++.+ +. ......+.+.+...+.|.++|+||+|
T Consensus 81 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~IlVvDa~~-g~-~~~t~~~~~~~~~~~ipiivviNK~D 145 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDF-------------SEDTYRTLTAVDCCLMVIDAAK-GV-EDRTRKLMEVTRLRDTPILTFMNKLD 145 (529)
T ss_dssp TEEEEEECCCCSTTC-------------CHHHHHGGGGCSEEEEEEETTT-CS-CHHHHHHHHHHTTTTCCEEEEEECTT
T ss_pred CeEEEEEECCCChhH-------------HHHHHHHHHHCCEEEEEEeCCc-cc-hHHHHHHHHHHHHcCCCEEEEEcCcC
Confidence 458999999999654 2456678899999888886544 33 33344556666667899999999999
Q ss_pred CCCCc
Q 013508 219 LMDKG 223 (441)
Q Consensus 219 ~~~~~ 223 (441)
+....
T Consensus 146 l~~~~ 150 (529)
T 2h5e_A 146 RDIRD 150 (529)
T ss_dssp SCCSC
T ss_pred Ccccc
Confidence 97543
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.01 E-value=3.2e-10 Score=118.36 Aligned_cols=134 Identities=16% Similarity=0.226 Sum_probs=68.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|+|+|+.++|||||+++|++..- ..++... . . .+.+....+
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg------~i~~~~~--~-------------------~------~~~D~~~~E-- 47 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICG------GLSDREM--E-------------------A------QVLDSMDLE-- 47 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTT------C----------------------------------------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC------Ccccccc--c-------------------c------cccccchhh--
Confidence 457899999999999999999986421 1111000 0 0 000000000
Q ss_pred hhcCCCCCcCCcceEEEEecC--CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccH
Q 013508 117 RVTGKTKQISPIPIHLSIYSP--NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATS 194 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~--~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~ 194 (441)
+..| ..+....+.+.+... ....++||||||..+. ...+..++...|.+|++|++.+ +...+
T Consensus 48 rerG--iTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVVDa~~-gv~~q 111 (599)
T 3cb4_D 48 RERG--ITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVVDAGQ-GVEAQ 111 (599)
T ss_dssp -----------CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEEETTT-CCCTH
T ss_pred hccc--ceeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEEECCC-CCCHH
Confidence 0011 122233344434321 2357899999998653 3456777888998888876543 33222
Q ss_pred HHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 195 DAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 195 ~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
.. .........+.|.|+|+||+|+...
T Consensus 112 t~-~~~~~~~~~~ipiIvViNKiDl~~a 138 (599)
T 3cb4_D 112 TL-ANCYTAMEMDLEVVPVLNKIDLPAA 138 (599)
T ss_dssp HH-HHHHHHHHTTCEEEEEEECTTSTTC
T ss_pred HH-HHHHHHHHCCCCEEEeeeccCcccc
Confidence 22 1122222347899999999999754
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.01 E-value=2.6e-10 Score=119.08 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
+.++||||||..+.. .+...++..+|.+|++++. ..++. ......++.+...+.|+|+|+||+|+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILVvDa-~~Gv~-~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILIVDI-NEGFK-PQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEEEET-TTCCC-HHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEEEC-CCCcc-HhHHHHHHHHHHcCCeEEEEeccccc
Confidence 368999999986642 2233567778988887754 33332 22233333344457899999999999
Q ss_pred CC
Q 013508 220 MD 221 (441)
Q Consensus 220 ~~ 221 (441)
..
T Consensus 135 ~~ 136 (594)
T 1g7s_A 135 IH 136 (594)
T ss_dssp ST
T ss_pred cc
Confidence 74
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.01 E-value=1.7e-10 Score=117.32 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC-CCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD-FLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~-~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
....|+++|.+++|||||+|+|++.. .++... + ..+.......+..-.+++.+.+....+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~-~-----------------~~~~~~~~~~g~~~~~~a~~~d~~~~er 67 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRT-I-----------------EKFEKEAAELGKGSFKYAWVLDKLKAER 67 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHH-H-----------------HHHHHHGGGGSSSCCCHHHHHHHHHHHH
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHH-H-----------------HHhhhhHHhcCCcchhhhhhhccchhHH
Confidence 34689999999999999999999741 111000 0 0000000000111112333333333222
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc----
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---- 191 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---- 191 (441)
. .|.+..+.. ..+.. ....++||||||..+. ...+..++..+|.+||+|++.+...
T Consensus 68 ~--~GiTi~~~~----~~~~~-~~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf 127 (458)
T 1f60_A 68 E--RGITIDIAL----WKFET-PKYQVTVIDAPGHRDF-------------IKNMITGTSQADCAILIIAGGVGEFEAGI 127 (458)
T ss_dssp H--TTCCCSCSC----EEEEC-SSEEEEEEECCCCTTH-------------HHHHHHSSSCCSEEEEEEECSHHHHHHHT
T ss_pred h--cCcEEEEEE----EEEec-CCceEEEEECCCcHHH-------------HHHHHhhhhhCCEEEEEEeCCcCcccccc
Confidence 2 343322222 12333 3357999999996432 3456678889998888876543211
Q ss_pred ----ccHHHHHHHHHhCCCCCc-EEEEeccCCCCC
Q 013508 192 ----ATSDAMKLAREVDPTGER-TFGVLTKLDLMD 221 (441)
Q Consensus 192 ----~~~~~l~l~~~~~~~~~r-~i~VltK~D~~~ 221 (441)
.+.+.+.+++. .+.+ +|+|+||+|+.+
T Consensus 128 ~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 128 SKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp CTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred CcchhHHHHHHHHHH---cCCCeEEEEEEcccccc
Confidence 12233334443 3554 899999999984
No 170
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.00 E-value=4.4e-10 Score=100.40 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCccccc-ccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHH
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSG-IVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDET 115 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~-~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 115 (441)
...+|+|+|+.|||||||++.|+|..+ |.... ..+..+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~--------------------------------------- 67 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFA--------------------------------------- 67 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEE---------------------------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEE---------------------------------------
Confidence 356899999999999999999999875 32211 1110000
Q ss_pred hhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc-ccc-
Q 013508 116 DRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD-IAT- 193 (441)
Q Consensus 116 ~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~-~~~- 193 (441)
.-.+.+.+ ....+.++|+||..... .++..|++.++.++++++..+.. +.+
T Consensus 68 -------------~~~i~~~g-~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~ 120 (191)
T 1oix_A 68 -------------TRSIQVDG-KTIKAQIWDTAGLERYR-------------AITSAYYRGAVGALLVYDIAKHLTYENV 120 (191)
T ss_dssp -------------EEEEEETT-EEEEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEEEEETTCHHHHHTH
T ss_pred -------------EEEEEECC-EEEEEEEEECCCCcchh-------------hhhHHHhhcCCEEEEEEECcCHHHHHHH
Confidence 00111111 11245679999986531 33456677778777766543221 111
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
..++..++.......+++.|+||+|+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 121 ERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 12233333334457899999999998643
No 171
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.00 E-value=9.4e-10 Score=108.68 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCCcE-EEEec
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGERT-FGVLT 215 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~r~-i~Vlt 215 (441)
...++||||||..+. ...+..+++.+|.+|++|+ +.++. +.+.+.+++. .+.+. |+|+|
T Consensus 59 ~~~i~iiDtPGh~~f-------------~~~~~~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~~---~~i~~~ivvvN 120 (370)
T 2elf_A 59 GRNMVFVDAHSYPKT-------------LKSLITALNISDIAVLCIP--PQGLDAHTGECIIALDL---LGFKHGIIALT 120 (370)
T ss_dssp SSEEEEEECTTTTTC-------------HHHHHHHHHTCSEEEEEEC--TTCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEc--CCCCcHHHHHHHHHHHH---cCCCeEEEEEE
Confidence 346999999998543 2334456688999988886 44432 2333444443 45666 99999
Q ss_pred -cCCC
Q 013508 216 -KLDL 219 (441)
Q Consensus 216 -K~D~ 219 (441)
|+|+
T Consensus 121 NK~Dl 125 (370)
T 2elf_A 121 RSDST 125 (370)
T ss_dssp CGGGS
T ss_pred eccCC
Confidence 9999
No 172
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.00 E-value=3.8e-10 Score=111.08 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
..+.|+++|.+|+|||||+++|++
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 173
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=2.6e-09 Score=107.97 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=45.1
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc--cHHHHHHHHHhCCCCC-cEEEEe
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA--TSDAMKLAREVDPTGE-RTFGVL 214 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~--~~~~l~l~~~~~~~~~-r~i~Vl 214 (441)
....++||||||..+. ...+..++..+|.+|++++..+ +.. +.+.+.+++.+ +. +.|+|+
T Consensus 102 ~~~~~~iiDtpGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~-g~~~qt~~~l~~~~~~---~~~~iIvvi 164 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY-------------TRNMATGASTCDLAIILVDARY-GVQTQTRRHSYIASLL---GIKHIVVAI 164 (434)
T ss_dssp SSEEEEEEECCCSGGG-------------HHHHHHHHTTCSEEEEEEETTT-CSCHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred CCceEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEECCC-CCcHHHHHHHHHHHHc---CCCeEEEEE
Confidence 3457999999997542 2445567889998888876543 321 22334444443 44 589999
Q ss_pred ccCCCCCC
Q 013508 215 TKLDLMDK 222 (441)
Q Consensus 215 tK~D~~~~ 222 (441)
||+|+.+.
T Consensus 165 NK~Dl~~~ 172 (434)
T 1zun_B 165 NKMDLNGF 172 (434)
T ss_dssp ECTTTTTS
T ss_pred EcCcCCcc
Confidence 99999863
No 174
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=1.9e-09 Score=108.07 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---ccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..++||||||..+ . ......++..+|.+||+++. +.+. .+.+.+.+++.+. ..+.|+|+||
T Consensus 81 ~~i~iiDtPGh~~------------f-~~~~~~~~~~~D~~ilVvda-~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGHET------------L-MATMLSGASLMDGAILVIAA-NEPCPQPQTKEHLMALEILG--IDKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSHHH------------H-HHHHHTTCSCCSEEEEEEET-TSCSSCHHHHHHHHHHHHTT--CCCEEEEEEC
T ss_pred cEEEEEECCCHHH------------H-HHHHHHhHhhCCEEEEEEEC-CCCCCCchhHHHHHHHHHcC--CCeEEEEEEc
Confidence 4689999999522 1 23344556678988887754 3332 2233344444332 2479999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+.+..
T Consensus 145 ~Dl~~~~ 151 (408)
T 1s0u_A 145 IDLVDEK 151 (408)
T ss_dssp TTSSCTT
T ss_pred cCCCCHH
Confidence 9998654
No 175
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.97 E-value=1.2e-09 Score=109.61 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---ccHHHHHHHHHhCCCCCcEEEEecc
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---ATSDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---~~~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..++||||||..+ . .......+..+|.+||++++ +.+. .+.+.+.+++.+. ..++|+|+||
T Consensus 83 ~~i~iiDtPGh~~------------f-~~~~~~~~~~~D~~ilVvda-~~g~~~~qt~e~l~~~~~~~--~~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHEA------------L-MTTMLAGASLMDGAILVIAA-NEPCPRPQTREHLMALQIIG--QKNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHHH------------H-HHHHHHCGGGCSEEEEEEET-TSCSSCHHHHHHHHHHHHHT--CCCEEEEEEC
T ss_pred cEEEEEECCChHH------------H-HHHHHhhhhhCCEEEEEEEC-CCCCCChhHHHHHHHHHHcC--CCcEEEEEEC
Confidence 4689999999632 1 23445566778988887754 3332 2334444555443 2478999999
Q ss_pred CCCCCCc
Q 013508 217 LDLMDKG 223 (441)
Q Consensus 217 ~D~~~~~ 223 (441)
+|+.+..
T Consensus 147 ~Dl~~~~ 153 (410)
T 1kk1_A 147 IELVDKE 153 (410)
T ss_dssp GGGSCHH
T ss_pred ccCCCHH
Confidence 9998643
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.97 E-value=1.9e-09 Score=97.32 Aligned_cols=78 Identities=18% Similarity=0.316 Sum_probs=41.8
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhc---CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVE---KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~---~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
++.++||||+..... +....+.++..+..|+. ..+.+++++. +...... ...++...+...+.+.++|.||+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~-~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQGLVVLMD-IRHPLKD-LDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCCH-HHHHHHHHHHHTTCCEEEEEECG
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccEEEEEEE-CCCCCch-hHHHHHHHHHHcCCCeEEEEecc
Confidence 788999999864211 11222333445555653 4555555554 3332211 11122333334567899999999
Q ss_pred CCCCCc
Q 013508 218 DLMDKG 223 (441)
Q Consensus 218 D~~~~~ 223 (441)
|+...+
T Consensus 148 D~~s~~ 153 (210)
T 1pui_A 148 DKLASG 153 (210)
T ss_dssp GGSCHH
T ss_pred cCCCch
Confidence 998654
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.95 E-value=2.1e-09 Score=107.66 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=46.0
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEecc
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTK 216 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~VltK 216 (441)
....++||||||..+. ...+..++..+|.+|+++++.+ +. .....+.+..+...+.| .++|+||
T Consensus 73 ~~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~-g~-~~qt~~~l~~~~~~~ip~iivviNK 137 (405)
T 2c78_A 73 AKRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAAD-GP-MPQTREHILLARQVGVPYIVVFMNK 137 (405)
T ss_dssp SSCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTT-CC-CHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCC-CC-cHHHHHHHHHHHHcCCCEEEEEEEC
Confidence 3468999999998542 3456677889999888886544 22 12222233333334667 7899999
Q ss_pred CCCCC
Q 013508 217 LDLMD 221 (441)
Q Consensus 217 ~D~~~ 221 (441)
+|+.+
T Consensus 138 ~Dl~~ 142 (405)
T 2c78_A 138 VDMVD 142 (405)
T ss_dssp GGGCC
T ss_pred ccccC
Confidence 99985
No 178
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.93 E-value=6.6e-10 Score=118.53 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. ...+..+++.+|.+|+++++.+ +. ......+.+.+...+.|.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~llVvDa~~-g~-~~~~~~~~~~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF-------------TVEVERSLRVLDGAVTVLDAQS-GV-EPQTETVWRQATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSC-------------CHHHHHHHHHCSEEEEEEETTT-BS-CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcch-------------HHHHHHHHHHCCEEEEEECCCC-CC-cHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 468999999999764 2446677888998888876543 33 22233334444445789999999999
Q ss_pred CCCC
Q 013508 219 LMDK 222 (441)
Q Consensus 219 ~~~~ 222 (441)
+...
T Consensus 139 l~~~ 142 (693)
T 2xex_A 139 KLGA 142 (693)
T ss_dssp STTC
T ss_pred cccc
Confidence 9864
No 179
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=4.3e-09 Score=104.95 Aligned_cols=82 Identities=13% Similarity=0.272 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCCcCccCC-CCcc----HHHHHHHHHHHhhc---------C--CCeEEEEeccCccccccHHHHHHHHHh
Q 013508 140 VNLTLIDLPGLTKVAVEG-QPDT----IVEDIESMVRSYVE---------K--PNSVILAISPANQDIATSDAMKLAREV 203 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~-~~~~----~~~~i~~~v~~yi~---------~--~~~iil~v~~a~~~~~~~~~l~l~~~~ 203 (441)
+.++++|+||+....... .-.. +...+..++..+.. . .+++++++.++..++... .+.+++.+
T Consensus 95 ~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~-Dieilk~L 173 (427)
T 2qag_B 95 LKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL-DLVTMKKL 173 (427)
T ss_dssp EEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH-HHHHHHHT
T ss_pred cccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH-HHHHHHHH
Confidence 378999999997532100 0011 12233333444421 1 134677788877766444 46788888
Q ss_pred CCCCCcEEEEeccCCCCCCc
Q 013508 204 DPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 204 ~~~~~r~i~VltK~D~~~~~ 223 (441)
. .+.++|+|+||+|.+.+.
T Consensus 174 ~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 174 D-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp C-SCSEEEEEESCGGGSCHH
T ss_pred h-hCCCEEEEEcchhccchH
Confidence 7 689999999999998754
No 180
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.87 E-value=5.7e-09 Score=104.27 Aligned_cols=125 Identities=22% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
.+.|++||.+||||||||++|+|....-.+....|..|..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~---------------------------------------- 196 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL---------------------------------------- 196 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE----------------------------------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCcccceeccee----------------------------------------
Confidence 4679999999999999999999985311122223333321
Q ss_pred hcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHH
Q 013508 118 VTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDA 196 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~ 196 (441)
| .+...+...++++|+||+........ .+. ....+.+...+.++.++..+...+.. +..
T Consensus 197 --G------------~V~~~~~~~~~l~DtpGli~~a~~~~--~L~----~~fl~~~era~~lL~vvDls~~~~~~ls~g 256 (416)
T 1udx_A 197 --G------------VVEVSEEERFTLADIPGIIEGASEGK--GLG----LEFLRHIARTRVLLYVLDAADEPLKTLETL 256 (416)
T ss_dssp --E------------EEECSSSCEEEEEECCCCCCCGGGSC--CSC----HHHHHHHTSSSEEEEEEETTSCHHHHHHHH
T ss_pred --e------------EEEecCcceEEEEeccccccchhhhh--hhh----HHHHHHHHHHHhhhEEeCCccCCHHHHHHH
Confidence 0 12222235689999999976422111 111 11123456788777777543111111 111
Q ss_pred HHHHHHhCC--CCCcEEEEeccCCCCCC
Q 013508 197 MKLAREVDP--TGERTFGVLTKLDLMDK 222 (441)
Q Consensus 197 l~l~~~~~~--~~~r~i~VltK~D~~~~ 222 (441)
.+....+.+ ...|.++|+||+|+...
T Consensus 257 ~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 257 RKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp HHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred HHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 222222221 25789999999998764
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.87 E-value=3.9e-09 Score=112.53 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=48.5
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. ...+..++..+|.+|+++++.+. . ........+.+...+.|.++|+||+|
T Consensus 76 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~~ilVvDa~~g-~-~~~t~~~~~~~~~~~~p~ivviNKiD 140 (691)
T 1dar_A 76 DHRINIIDTPGHVDF-------------TIEVERSMRVLDGAIVVFDSSQG-V-EPQSETVWRQAEKYKVPRIAFANKMD 140 (691)
T ss_dssp TEEEEEECCCSSTTC-------------HHHHHHHHHHCSEEEEEEETTTC-S-CHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEECcCccch-------------HHHHHHHHHHCCEEEEEEECCCC-c-chhhHHHHHHHHHcCCCEEEEEECCC
Confidence 468999999998653 35677888889988888865442 2 22222333334445789999999999
Q ss_pred CCCC
Q 013508 219 LMDK 222 (441)
Q Consensus 219 ~~~~ 222 (441)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9754
No 182
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=2.2e-09 Score=105.07 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=27.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccE
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPL 76 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~ 76 (441)
.+|++||.+|+|||||+|+|+|..+.......||..|+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~ 40 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPN 40 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECce
Confidence 47999999999999999999998743344455677664
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=1.9e-08 Score=100.61 Aligned_cols=82 Identities=16% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCcEEEeCCCCCcCccCC-CCccHHHHHHHHHHHhh-----------cCCC--eEEEEeccCccccccHHHHHHHHHhCC
Q 013508 140 VNLTLIDLPGLTKVAVEG-QPDTIVEDIESMVRSYV-----------EKPN--SVILAISPANQDIATSDAMKLAREVDP 205 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~-~~~~~~~~i~~~v~~yi-----------~~~~--~iil~v~~a~~~~~~~~~l~l~~~~~~ 205 (441)
..++++|+||+....... .-..+.+.+......|+ .+++ ++++++.|....+...+ ..+++.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 478999999997532110 00112222333333343 3343 45555555433443333 456677765
Q ss_pred CCCcEEEEeccCCCCCCc
Q 013508 206 TGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~~~ 223 (441)
+.++|+|+||+|++.+.
T Consensus 167 -~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 167 -KVNIIPLIAKADTLTPE 183 (418)
T ss_dssp -TSEEEEEEESTTSSCHH
T ss_pred -cCcEEEEEEcccCccHH
Confidence 78999999999998643
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.83 E-value=2.3e-10 Score=119.83 Aligned_cols=67 Identities=21% Similarity=0.217 Sum_probs=33.6
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcc--------ccccHHHHHHHHHhCCCCCc-
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQ--------DIATSDAMKLAREVDPTGER- 209 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~--------~~~~~~~l~l~~~~~~~~~r- 209 (441)
...++||||||..+.. ..+..++..+|++||+|+.... ...+...+.++.. .+.+
T Consensus 254 ~~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~ 317 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFI-------------SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISE 317 (592)
T ss_dssp -----CCEEESSSEEE-------------EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCC
T ss_pred CeEEEEEECCChHHHH-------------HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCe
Confidence 3589999999986532 1123445678888887755431 1123333444444 3554
Q ss_pred EEEEeccCCCCC
Q 013508 210 TFGVLTKLDLMD 221 (441)
Q Consensus 210 ~i~VltK~D~~~ 221 (441)
+|+|+||+|+.+
T Consensus 318 iIvviNKiDl~~ 329 (592)
T 3mca_A 318 IVVSVNKLDLMS 329 (592)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEecccccc
Confidence 899999999986
No 185
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.82 E-value=4.3e-09 Score=105.10 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=44.8
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-ccHHHHHHHHHhCCCCCc-EEEEec
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~~~~l~l~~~~~~~~~r-~i~Vlt 215 (441)
....++||||||..+. ...+..++..+|.+|+++++.+... .+.+.+.+++ ..+.+ .|+|+|
T Consensus 64 ~~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~---~~~vp~iivviN 127 (397)
T 1d2e_A 64 AARHYAHTDCPGHADY-------------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLAR---QIGVEHVVVYVN 127 (397)
T ss_dssp SSCEEEEEECSSHHHH-------------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHH---HTTCCCEEEEEE
T ss_pred CCeEEEEEECCChHHH-------------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHH---HcCCCeEEEEEE
Confidence 3468999999997431 2455677889998888876543221 1122333443 34677 689999
Q ss_pred cCCCCC
Q 013508 216 KLDLMD 221 (441)
Q Consensus 216 K~D~~~ 221 (441)
|+|+.+
T Consensus 128 K~Dl~~ 133 (397)
T 1d2e_A 128 KADAVQ 133 (397)
T ss_dssp CGGGCS
T ss_pred CcccCC
Confidence 999985
No 186
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.82 E-value=4.7e-10 Score=110.86 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-..|+++|.+|+|||||+|+|+|.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 357999999999999999999987
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.82 E-value=2e-08 Score=107.13 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
..++||||||..+. ...+..+++.+|.+|+++++.. +. ......+.+.+...+.|.++|+||+|+
T Consensus 82 ~~i~liDTPG~~df-------------~~~~~~~l~~aD~aIlVvDa~~-gv-~~qt~~~~~~~~~~~ip~ilviNKiD~ 146 (704)
T 2rdo_7 82 HRINIIDTPGHVDF-------------TIEVERSMRVLDGAVMVYCAVG-GV-QPQSETVWRQANKYKVPRIAFVNKMDR 146 (704)
T ss_pred eeEEEEeCCCccch-------------HHHHHHHHHHCCEEEEEEeCCC-CC-cHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 68999999998653 3556778888998888876543 33 222333444455567899999999998
Q ss_pred CCC
Q 013508 220 MDK 222 (441)
Q Consensus 220 ~~~ 222 (441)
...
T Consensus 147 ~~~ 149 (704)
T 2rdo_7 147 MGA 149 (704)
T ss_pred ccc
Confidence 754
No 188
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.82 E-value=1e-08 Score=100.29 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+.|+++|.+|+||||++|+|+|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 189
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.81 E-value=4e-09 Score=106.57 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=45.2
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc------ccc--HHHHHHHHHhCCCC-Cc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD------IAT--SDAMKLAREVDPTG-ER 209 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~------~~~--~~~l~l~~~~~~~~-~r 209 (441)
...++||||||..+. ...+..++..+|++|+++++.+.. +.. .+.+.+++. .+ .+
T Consensus 83 ~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~---~~~~~ 146 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF-------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT---MGLDQ 146 (435)
T ss_dssp SCEEEECCCSSSTTH-------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH---TTCTT
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCe
Confidence 457999999998542 245667889999988888665421 211 222233333 34 36
Q ss_pred EEEEeccCCCCCC
Q 013508 210 TFGVLTKLDLMDK 222 (441)
Q Consensus 210 ~i~VltK~D~~~~ 222 (441)
.|+|+||+|+.+.
T Consensus 147 iivviNK~Dl~~~ 159 (435)
T 1jny_A 147 LIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEEECGGGSSS
T ss_pred EEEEEEcccCCCc
Confidence 8999999999863
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.80 E-value=2.7e-08 Score=96.95 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-..|+++|.+|||||||+|+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999964
No 191
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.77 E-value=4.9e-09 Score=114.07 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
...++||||||..+. ...+..+++..|++|++++..+ +... ....+.+.+...+.+.|+|+||+|
T Consensus 97 ~~~i~liDTPG~~df-------------~~~~~~~l~~aD~ailVvDa~~-g~~~-qt~~~~~~~~~~~~p~ilviNK~D 161 (842)
T 1n0u_A 97 SFLINLIDSPGHVDF-------------SSEVTAALRVTDGALVVVDTIE-GVCV-QTETVLRQALGERIKPVVVINKVD 161 (842)
T ss_dssp EEEEEEECCCCCCSS-------------CHHHHHHHHTCSEEEEEEETTT-BSCH-HHHHHHHHHHHTTCEEEEEEECHH
T ss_pred CceEEEEECcCchhh-------------HHHHHHHHHhCCEEEEEEeCCC-CCCH-HHHHHHHHHHHcCCCeEEEEECCC
Confidence 357899999999764 2457788899998888876543 3322 223333444445789999999999
Q ss_pred CC
Q 013508 219 LM 220 (441)
Q Consensus 219 ~~ 220 (441)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 87
No 192
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.76 E-value=2.6e-09 Score=100.04 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred cCCCeEEEECCC---------CCcHHHHHHHHhCC
Q 013508 36 EALPSVAVVGGQ---------SSGKSSVLESVVGR 61 (441)
Q Consensus 36 ~~lP~IvVvG~~---------ssGKSSllnaL~G~ 61 (441)
....+|+|+|.+ |+|||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 345689999999 99999999999994
No 193
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=6.9e-09 Score=99.60 Aligned_cols=137 Identities=22% Similarity=0.310 Sum_probs=64.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCccccccccc-ccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHhh
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTR-RPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETDR 117 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr-~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 117 (441)
..|+|+|+.|||||||+|.|.|...+|... +.-. .+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~----------------------------------------- 56 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKI----------------------------------------- 56 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC----------------------------------------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCccc-----------------------------------------
Confidence 468999999999999999999985555432 1100 000
Q ss_pred hcCCCCCcCCcceEEEEecC-CCCCcEEEeCCCCCcCccC-CCCccHHHHHHHHHHHhhcCC-------------CeEEE
Q 013508 118 VTGKTKQISPIPIHLSIYSP-NVVNLTLIDLPGLTKVAVE-GQPDTIVEDIESMVRSYVEKP-------------NSVIL 182 (441)
Q Consensus 118 ~~g~~~~~s~~~i~~~i~~~-~~~~l~lvDtPGi~~~~~~-~~~~~~~~~i~~~v~~yi~~~-------------~~iil 182 (441)
..+..+. .+.+.+..+ ....++++||||+...... ..-..+...+......|+... .++++
T Consensus 57 --~~t~~~~--~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ 132 (301)
T 2qnr_A 57 --ERTVQIE--ASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFY 132 (301)
T ss_dssp ------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEE
T ss_pred --CCcceEe--eEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheee
Confidence 0000000 011111111 2357899999999542110 001223333333333554432 23566
Q ss_pred EeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 183 AISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 183 ~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++.|....+...+ .++++.+.+ ..++++|+||.|+..+.
T Consensus 133 ldePt~~~Ld~~~-~~~l~~l~~-~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 133 FISPFGHGLKPLD-VAFMKAIHN-KVNIVPVIAKADTLTLK 171 (301)
T ss_dssp EECSSSSSCCHHH-HHHHHHHTT-TSCEEEEECCGGGSCHH
T ss_pred eecCcccCCCHHH-HHHHHHHHh-cCCEEEEEEeCCCCCHH
Confidence 6655433343333 466777653 56899999999998643
No 194
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.76 E-value=9.9e-09 Score=104.58 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=39.0
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc--------cccHHHHHHHHHhCCCCCc-
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD--------IATSDAMKLAREVDPTGER- 209 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~--------~~~~~~l~l~~~~~~~~~r- 209 (441)
...++||||||..+. ...+..++..+|.+||+|+..+.. ..+.+.+.++.. .+.+
T Consensus 120 ~~~~~iiDtPGh~~f-------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~---~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINH 183 (467)
T ss_dssp SEEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSS
T ss_pred CeEEEEEECCCcHHH-------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH---cCCCE
Confidence 457999999998543 234456678899888888654321 123333444433 3565
Q ss_pred EEEEeccCCCCC
Q 013508 210 TFGVLTKLDLMD 221 (441)
Q Consensus 210 ~i~VltK~D~~~ 221 (441)
+|+|+||+|+..
T Consensus 184 iivviNK~Dl~~ 195 (467)
T 1r5b_A 184 LVVVINKMDEPS 195 (467)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECccCCC
Confidence 899999999964
No 195
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.74 E-value=9.4e-09 Score=101.58 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
.-.+|++||.+|+|||||+|+|+|..+.......||..|..-...- ++. . ...+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v-~~~--r------------------~~~l~~~~- 78 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV-PDE--R------------------FDFLCQYH- 78 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC-CCH--H------------------HHHHHHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE-CCc--c------------------ceeecccc-
Confidence 4568999999999999999999998763334456776664322111 000 0 00000000
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA 187 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a 187 (441)
.. .. . ....+.|+||||+...... .+.+.+....|++++|+|+++|...
T Consensus 79 --~p---------~~--~---~~~~i~lvDtpGl~~~as~------~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 79 --KP---------AS--K---IPAFLNVVDIAGLVKGAHN------GQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp --CC---------SE--E---ECCEEEEEECCC-----------------CCHHHHHHHTSSSEEEEEEC-
T ss_pred --Cc---------cc--c---cccccEEEECCCcccccch------hhHHHHHHHHHHHhcCeEEEEEecC
Confidence 00 00 0 0236899999999874321 1222335678899999988887653
No 196
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.72 E-value=1.8e-09 Score=106.64 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..|+++|.+|+|||||+|+|+|..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhh
Confidence 579999999999999999999874
No 197
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.70 E-value=5.8e-08 Score=99.16 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~VltK~ 217 (441)
..+++||||||..... ......+.... .++ .++.+++++++ ..+. ++...++.+.+. .+ +++|+||+
T Consensus 183 ~~DvvIIDTpG~~~~~-----~~l~~el~~~~-~~i-~pd~vllVvDa-~~g~---~~~~~a~~~~~~-~~i~gvVlNK~ 250 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE-----DSLFEEMLQVA-NAI-QPDNIVYVMDA-SIGQ---ACEAQAKAFKDK-VDVASVIVTKL 250 (504)
T ss_dssp TCCEEEEEECCCCTTC-----HHHHHHHHHHH-HHH-CCSEEEEEEET-TCCT---THHHHHHHHHHH-HCCCCEEEECT
T ss_pred CCcEEEEeCCCCcccc-----hhHHHHHHHHH-hhh-cCceEEEEEec-cccc---cHHHHHHHHHhh-cCceEEEEeCC
Confidence 4589999999997531 22222222222 233 68877776654 3332 234445544432 45 58999999
Q ss_pred CCCCCcCcHHH
Q 013508 218 DLMDKGTNALD 228 (441)
Q Consensus 218 D~~~~~~~~~~ 228 (441)
|....+..+.+
T Consensus 251 D~~~~~g~~l~ 261 (504)
T 2j37_W 251 DGHAKGGGALS 261 (504)
T ss_dssp TSCCCCTHHHH
T ss_pred ccccchHHHHH
Confidence 99866544443
No 198
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.68 E-value=1.2e-07 Score=91.22 Aligned_cols=73 Identities=14% Similarity=0.299 Sum_probs=47.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc--HHH---HHHHHHhCCCCCcEEEE
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT--SDA---MKLAREVDPTGERTFGV 213 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~--~~~---l~l~~~~~~~~~r~i~V 213 (441)
...+.||||||..+... ..+ +...|+++++++|++++..+. +.. ..+ +..++...+ +.+.++|
T Consensus 45 ~v~LqIWDTAGQErf~~----~~l------~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~-~ipillv 112 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFE----PSY------DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNP-SINIEVL 112 (331)
T ss_dssp SSCEEEEECCSCSSSCC----CSH------HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred EEEEEEEECCCchhccc----hhh------hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCC-CCcEEEE
Confidence 36899999999866410 000 357889999999888866543 211 111 222233344 6899999
Q ss_pred eccCCCCCCc
Q 013508 214 LTKLDLMDKG 223 (441)
Q Consensus 214 ltK~D~~~~~ 223 (441)
.||+|+.+..
T Consensus 113 gNK~DL~~~~ 122 (331)
T 3r7w_B 113 IHKVDGLSED 122 (331)
T ss_dssp CCCCCSSCSH
T ss_pred EECcccCchh
Confidence 9999998653
No 199
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.66 E-value=2.8e-08 Score=105.56 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=76.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
....|+|+|+.++|||||+++|++........+.+. .+..+.++... +.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~------------------------~g~~~~d~~~~------e~- 56 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVE------------------------EGTTTTDYTPE------AK- 56 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG------------------------GTCCSSCCSHH------HH-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceec------------------------CCcccccCCHH------HH-
Confidence 456899999999999999999997543100111110 00111111110 00
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDA 196 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~ 196 (441)
..+ ..+...... +.. ....++|+||||..+. ...+..+++..|.+++++++ ..+. ....
T Consensus 57 -~~g--iti~~~~~~--~~~-~~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~-~~g~-~~qt 115 (665)
T 2dy1_A 57 -LHR--TTVRTGVAP--LLF-RGHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSA-EAGV-QVGT 115 (665)
T ss_dssp -HTT--SCCSCEEEE--EEE-TTEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEET-TTCS-CHHH
T ss_pred -hcC--CeEEecceE--Eee-CCEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcC-Cccc-chhH
Confidence 011 112222222 222 2457899999998653 35677788889988888874 3333 2222
Q ss_pred HHHHHHhCCCCCcEEEEeccCCCC
Q 013508 197 MKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 197 l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
..+.+.+...+.+.|+|+||+|+.
T Consensus 116 ~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHHHHHccCCEEEEecCCchh
Confidence 334444444578999999999987
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.65 E-value=3.9e-08 Score=101.89 Aligned_cols=137 Identities=13% Similarity=0.208 Sum_probs=78.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCC--CccccChHHHHHHHHH
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLP--KRRFTDFSMVRKEIQD 113 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~i~~ 113 (441)
.....|+|+|...+|||||.++|+-.. |...+ .+...... +..+.|+..+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~t------G~i~~----------------~G~V~~~~~~~~~~~D~~~~------ 80 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFG------GAIQM----------------AGSVKARKAARHATSDWMAM------ 80 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHT------TCHHH----------------HHHHHHC-------------------
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhc------Ccccc----------------cceeecCccccccccCChHH------
Confidence 345679999999999999999997332 11110 00000000 0011111111
Q ss_pred HHhhhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc
Q 013508 114 ETDRVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT 193 (441)
Q Consensus 114 ~~~~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~ 193 (441)
+.+ ++-.+....+.+.. +...++||||||..+.. .-+.+.++-.|..|++|++. .+...
T Consensus 81 Ere----RGITI~s~~~~~~~---~~~~iNlIDTPGHvDF~-------------~Ev~raL~~~DgAvlVvda~-~GV~~ 139 (548)
T 3vqt_A 81 ERE----RGISVTTSVMQFPY---RDRVVNLLDTPGHQDFS-------------EDTYRVLTAVDSALVVIDAA-KGVEA 139 (548)
T ss_dssp -----------CTTTEEEEEE---TTEEEEEECCCCGGGCS-------------HHHHHHHHSCSEEEEEEETT-TBSCH
T ss_pred HHH----CCCcEeeceEEEEE---CCEEEEEEeCCCcHHHH-------------HHHHHHHHhcCceEEEeecC-CCccc
Confidence 111 11223344444433 34689999999998863 33566677889988888653 44433
Q ss_pred HHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 194 SDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 194 ~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
....+.+.+...+.|.|+++||+|....
T Consensus 140 -qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 140 -QTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp -HHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred -ccHHHHHHHHHhCCceEEEEecccchhc
Confidence 3334556666678999999999998643
No 201
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.65 E-value=1.9e-08 Score=110.35 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=45.8
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc-ccHHHHHHHHHhCCCCCc-EEEEec
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI-ATSDAMKLAREVDPTGER-TFGVLT 215 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~-~~~~~l~l~~~~~~~~~r-~i~Vlt 215 (441)
....++||||||..+. ......++..+|.+|++|+..+... .+.+.+.+++. .+.| .|+|+|
T Consensus 357 ~~~kI~IIDTPGHedF-------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~---lgIP~IIVVIN 420 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADY-------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ---VGVPYIIVFLN 420 (1289)
T ss_dssp SSCEEEEEECCCHHHH-------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH---HTCSCEEEEEE
T ss_pred CCEEEEEEECCChHHH-------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH---cCCCeEEEEEe
Confidence 3468999999997432 3455678889998888876543221 22334444444 3667 789999
Q ss_pred cCCCCC
Q 013508 216 KLDLMD 221 (441)
Q Consensus 216 K~D~~~ 221 (441)
|+|+.+
T Consensus 421 KiDLv~ 426 (1289)
T 3avx_A 421 KCDMVD 426 (1289)
T ss_dssp CCTTCC
T ss_pred eccccc
Confidence 999986
No 202
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.64 E-value=4e-08 Score=92.73 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=48.1
Q ss_pred CCcEEEeCCCCCcCccCCCCc-cHHHHHHHHHHHhhc--------------CCCeEEEEeccCccccccHHHHHHHHHhC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPD-TIVEDIESMVRSYVE--------------KPNSVILAISPANQDIATSDAMKLAREVD 204 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~-~~~~~i~~~v~~yi~--------------~~~~iil~v~~a~~~~~~~~~l~l~~~~~ 204 (441)
+.++++|+||+.......... .+...+......++. .+.+.++++++...++...+ .++++.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 478999999997643322111 122222222222211 23666777776655554433 56777776
Q ss_pred CCCCcEEEEeccCCCCCCc
Q 013508 205 PTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 205 ~~~~r~i~VltK~D~~~~~ 223 (441)
.. .++|+|+||+|.+.+.
T Consensus 139 ~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 139 KV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp TT-SEEEEEETTGGGSCHH
T ss_pred hc-CcEEEEEeccccCCHH
Confidence 65 8999999999999765
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.61 E-value=6.2e-08 Score=95.28 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=30.2
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEE
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLV 77 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~ 77 (441)
.+|++||.+|+|||||+|+|+|..........||..|+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~ 40 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV 40 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccce
Confidence 469999999999999999999875323344567777754
No 204
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.58 E-value=7.1e-08 Score=90.20 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHh-----CCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVV-----GRDF 63 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~-----G~~~ 63 (441)
..+.++++|..|+||||++++|. |.++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 46778999999999999999998 7665
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.55 E-value=6.9e-08 Score=103.35 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=77.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
++..|+|+|+..+|||||.++|+-.. |...+ .-.+. .+..++|+... +.+
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~------g~i~~-~g~v~-----------------~~~~~~D~~~~------E~e 61 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYT------GVNHK-LGEVH-----------------DGAATTDWMVQ------EQE 61 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHH------HHHHH-C-----------------------------------------
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhc------CCCCc-Cceec-----------------CCCccCCChHH------HHH
Confidence 45679999999999999999998321 11111 00000 00111121111 111
Q ss_pred hhcCCCCCcCCcceEEEEecCC----CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc
Q 013508 117 RVTGKTKQISPIPIHLSIYSPN----VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA 192 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~----~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~ 192 (441)
++-.+....+.+...+.. ...++||||||..+.. .-+.+.++-.|..|++|++ ..+..
T Consensus 62 ----RGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~-------------~Ev~~aLr~~DgavlvVDa-veGV~ 123 (709)
T 4fn5_A 62 ----RGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT-------------IEVERSLRVLDGAVVVFCG-TSGVE 123 (709)
T ss_dssp ----------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH-------------HHHHHHHHHCSEEEEEEET-TTCSC
T ss_pred ----cCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH-------------HHHHHHHHHhCeEEEEEEC-CCCCc
Confidence 122334445555544322 3569999999998763 3455667778988888754 44443
Q ss_pred cHHHHHHHHHhCCCCCcEEEEeccCCCCC
Q 013508 193 TSDAMKLAREVDPTGERTFGVLTKLDLMD 221 (441)
Q Consensus 193 ~~~~l~l~~~~~~~~~r~i~VltK~D~~~ 221 (441)
.....+.+++...+.|.|+|+||+|...
T Consensus 124 -~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 124 -PQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp -HHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred -hhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 3333455666666899999999999864
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.50 E-value=4.2e-08 Score=103.65 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=49.3
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
+...++||||||..+.. .-+.+.++-.|..|++|++ ..+...+. ..+.+.+...+.|.|+++||+
T Consensus 65 ~~~~iNlIDTPGH~DF~-------------~Ev~raL~~~DgavlVVDa-~~GV~~qT-~~v~~~a~~~~lp~i~~INKm 129 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFL-------------AEVYRSLSVLDGAILLISA-KDGVQAQT-RILFHALRKMGIPTIFFINKI 129 (638)
T ss_dssp SSCBCCCEECCCSSSTH-------------HHHHHHHTTCSEEECCEES-SCTTCSHH-HHHHHHHHHHTCSCEECCEEC
T ss_pred CCEEEEEEECCCcHHHH-------------HHHHHHHHHhCEEEEEEeC-CCCCcHHH-HHHHHHHHHcCCCeEEEEecc
Confidence 34679999999998762 4466777788988887754 44553332 334455555578999999999
Q ss_pred CCCCC
Q 013508 218 DLMDK 222 (441)
Q Consensus 218 D~~~~ 222 (441)
|....
T Consensus 130 Dr~~a 134 (638)
T 3j25_A 130 DQNGI 134 (638)
T ss_dssp CSSSC
T ss_pred ccccC
Confidence 98644
No 207
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=1e-06 Score=88.16 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=49.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||.... .......+..+ .. +..++.++|++++ .. .+++...++.+.+....+.+|+||+|
T Consensus 182 ~~DvVIIDTaGrl~~-----d~~lm~el~~i-~~-~~~pd~vlLVvDA-~~---gq~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKE-----DKALIEEMKQI-SN-VIHPHEVILVIDG-TI---GQQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TCSEEEEECCCCSSC-----CHHHHHHHHHH-HH-HHCCSEEEEEEEG-GG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred CCCEEEEECCCcccc-----hHHHHHHHHHH-HH-hhcCceEEEEEeC-CC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence 368999999998653 12222222222 22 2357776666654 33 24556666777665667889999999
Q ss_pred CCCCcCcHHHHH
Q 013508 219 LMDKGTNALDVL 230 (441)
Q Consensus 219 ~~~~~~~~~~~l 230 (441)
....+..+..+.
T Consensus 251 ~~~~gG~~ls~~ 262 (443)
T 3dm5_A 251 GSAKGGGALSAV 262 (443)
T ss_dssp SCSSHHHHHHHH
T ss_pred CcccccHHHHHH
Confidence 987765444443
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.46 E-value=2.5e-07 Score=91.54 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCC-CcccccccccccEE
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDF-LPRGSGIVTRRPLV 77 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~-lP~~~~~~Tr~p~~ 77 (441)
.-..|++||.+|||||||+|+|+|..+ .......||..|+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 456899999999999999999999875 34455667777754
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.42 E-value=1.1e-06 Score=87.48 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCCCcccccccccccEEEEEEecCCCcchhHHhhcCCCccccChHHHHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGSQEYAEFLHLPKRRFTDFSMVRKEIQDETD 116 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~Tr~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 116 (441)
..+.++++|+.|||||||+|+|+|..- |....+....+. .+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~-------------------------------------~t- 108 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVE-------------------------------------VT- 108 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC------------------------------------------
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCee-------------------------------------cc-
Confidence 445899999999999999999999742 332222221110 00
Q ss_pred hhcCCCCCcCCcceEEEEecCCCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHh-hcCCCeEEEEeccCccccccHH
Q 013508 117 RVTGKTKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSY-VEKPNSVILAISPANQDIATSD 195 (441)
Q Consensus 117 ~~~g~~~~~s~~~i~~~i~~~~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~y-i~~~~~iil~v~~a~~~~~~~~ 195 (441)
...+. ...+..++++++|+||+... ..... ++.... +...+..+. + +... . ...
T Consensus 109 ----------~~~~v--~q~~~~~~ltv~D~~g~~~~-----~~~~~----~~L~~~~L~~~~~~~~-l-S~G~-~-~kq 163 (413)
T 1tq4_A 109 ----------MERHP--YKHPNIPNVVFWDLPGIGST-----NFPPD----TYLEKMKFYEYDFFII-I-SATR-F-KKN 163 (413)
T ss_dssp ----------CCCEE--EECSSCTTEEEEECCCGGGS-----SCCHH----HHHHHTTGGGCSEEEE-E-ESSC-C-CHH
T ss_pred ----------eeEEe--ccccccCCeeehHhhcccch-----HHHHH----HHHHHcCCCccCCeEE-e-CCCC-c-cHH
Confidence 00011 12234468999999999642 12222 222222 333344443 4 3322 2 344
Q ss_pred HHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 196 AMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 196 ~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
.+.+++.+...+.|+++|+||+|++
T Consensus 164 rv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 164 DIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp HHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEecCccc
Confidence 4557777776789999999999975
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=1.1e-06 Score=91.37 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=25.0
Q ss_pred cCCCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 36 EALPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 36 ~~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
...+.|+|+|.||+|||||+|+|+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 3567899999999999999999999874
No 211
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.34 E-value=2.6e-07 Score=87.70 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+|+++|.+|+|||||+|+|+|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 45799999999999999999999875
No 212
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.30 E-value=1e-06 Score=88.18 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=47.9
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.+++.||||||...... .......+..+. ..+ .++.+++++++.. + +++...++.+.+.-..+.+|+||+|
T Consensus 179 ~~DvvIIDTaGr~~~~~---d~~lm~el~~i~-~~~-~pd~vlLVlDa~~-g---q~a~~~a~~f~~~~~~~gVIlTKlD 249 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGE---ETKLLEEMKEMY-DVL-KPDDVILVIDASI-G---QKAYDLASRFHQASPIGSVIITKMD 249 (433)
T ss_dssp TCSEEEEEECCCSSSCC---TTHHHHHHHHHH-HHH-CCSEEEEEEEGGG-G---GGGHHHHHHHHHHCSSEEEEEECGG
T ss_pred CCCEEEEECCCCccccC---CHHHHHHHHHHH-Hhh-CCcceEEEEeCcc-c---hHHHHHHHHHhcccCCcEEEEeccc
Confidence 56899999999754100 222333333322 223 4677777665433 2 3444555666544456889999999
Q ss_pred CCCCcCcHHHH
Q 013508 219 LMDKGTNALDV 229 (441)
Q Consensus 219 ~~~~~~~~~~~ 229 (441)
....+..+..+
T Consensus 250 ~~a~~G~als~ 260 (433)
T 3kl4_A 250 GTAKGGGALSA 260 (433)
T ss_dssp GCSCHHHHHHH
T ss_pred ccccchHHHHH
Confidence 88665444444
No 213
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.29 E-value=1.1e-07 Score=86.39 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.|+|+|.+|||||||+++|++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999975
No 214
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.20 E-value=3.1e-06 Score=84.94 Aligned_cols=79 Identities=27% Similarity=0.272 Sum_probs=45.3
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCC-CcEEEEec
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG-ERTFGVLT 215 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~-~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~-~r~i~Vlt 215 (441)
...+++||||||.... ....+..+.. ..+..++.+++++.+ ..+ +++...++.+.+.- ..+.+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~--------~~~l~~~l~~i~~~~~~d~vllVvda-~~g---~~~~~~~~~~~~~~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE--------EKGLLEEMKQIKEITNPDEIILVIDG-TIG---QQAGIQAKAFKEAVGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS--------HHHHHHHHHHTTSSSCCSEEEEEEEG-GGG---GGHHHHHHHHHTTSCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc--------cHHHHHHHHHHHHHhcCcceeEEeec-ccc---HHHHHHHHHHhhcccCCeEEEEe
Confidence 3568999999998652 1122222211 112257877666643 333 24455566665432 33899999
Q ss_pred cCCCCCCcCcHHH
Q 013508 216 KLDLMDKGTNALD 228 (441)
Q Consensus 216 K~D~~~~~~~~~~ 228 (441)
|+|....+..+..
T Consensus 247 K~D~~~~~g~~l~ 259 (432)
T 2v3c_C 247 KLDGSAKGGGALS 259 (432)
T ss_dssp CSSSCSTTHHHHH
T ss_pred CCCCccchHHHHH
Confidence 9998765443333
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.09 E-value=1.5e-06 Score=81.56 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=23.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
.+|+++|.+|+|||||+|+|+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6899999999999999999999875
No 216
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.97 E-value=4.1e-05 Score=72.97 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCc-EEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGER-TFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r-~i~VltK~ 217 (441)
..+++||||||...... .......+..+ .. ...++.+++++.+. . .++.+..++.+.+. .+ +.+|+||+
T Consensus 180 ~~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~-~~~~d~vllVvda~-~---g~~~~~~~~~~~~~-~~i~gvVlnk~ 249 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGE---EAALLEEMKNI-YE-AIKPDEVTLVIDAS-I---GQKAYDLASKFNQA-SKIGTIIITKM 249 (297)
T ss_dssp TCSEEEEECCCSCCTTC---HHHHHHHHHHH-HH-HHCCSEEEEEEEGG-G---GGGHHHHHHHHHHT-CTTEEEEEECG
T ss_pred CCCEEEEeCCCCccccc---HHHHHHHHHHH-HH-HhcCCEEEEEeeCC-c---hHHHHHHHHHHHhh-CCCCEEEEeCC
Confidence 45899999999865100 11121112111 22 33578777776543 2 24455566666543 44 77899999
Q ss_pred CCCCCcCcHHHH
Q 013508 218 DLMDKGTNALDV 229 (441)
Q Consensus 218 D~~~~~~~~~~~ 229 (441)
|....+..+..+
T Consensus 250 D~~~~~g~~~~~ 261 (297)
T 1j8m_F 250 DGTAKGGGALSA 261 (297)
T ss_dssp GGCTTHHHHHHH
T ss_pred CCCcchHHHHHH
Confidence 987655433343
No 217
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.97 E-value=1.1e-05 Score=80.90 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..-.|+|+|.+++|||||||.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4556899999999999999999974
No 218
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=8.2e-05 Score=75.21 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=48.9
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHH---HHhhc-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEec
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMV---RSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLT 215 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v---~~yi~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~Vlt 215 (441)
.++.||||+|..... ......+.+++ +.... .++.++|++++ .. .++++..++.+...-..+.+|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDa-tt---Gq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDA-ST---GQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG-GG---THHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecC-cc---cHHHHHHHHHHHhhcCCCEEEEE
Confidence 478999999986431 12222222222 22222 36667776643 32 34566666666543345789999
Q ss_pred cCCCCCCcCcHHHHHc
Q 013508 216 KLDLMDKGTNALDVLE 231 (441)
Q Consensus 216 K~D~~~~~~~~~~~l~ 231 (441)
|+|-...+..+..++.
T Consensus 447 KLD~takgG~~lsi~~ 462 (503)
T 2yhs_A 447 KLDGTAKGGVIFSVAD 462 (503)
T ss_dssp CGGGCSCCTHHHHHHH
T ss_pred cCCCcccccHHHHHHH
Confidence 9998777766666543
No 219
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.89 E-value=1.7e-05 Score=79.62 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHH-HhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVR-SYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~-~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+++||||||..... .... ..+.. .++..++.+++++.+. .. +++...++.+.+.-.-+-+|+||+
T Consensus 183 ~~D~VIIDTpG~l~~~-----~~l~---~~L~~~~~~~~p~~vllVvda~-~g---~~~~~~~~~f~~~l~i~gvVlnK~ 250 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD-----EAMM---DEIKQVHASINPVETLFVVDAM-TG---QDAANTAKAFNEALPLTGVVLTKV 250 (433)
T ss_dssp TCSEEEEECCCCCTTC-----HHHH---HHHHHHHHHSCCSEEEEEEETT-BC---TTHHHHHHHHHHHSCCCCEEEECT
T ss_pred CCCEEEEECCCccccc-----HHHH---HHHHHHHHhhcCcceeEEeecc-hh---HHHHHHHHHHhccCCCeEEEEecC
Confidence 4589999999976531 1111 22211 3344688777776543 22 345555555543212245789999
Q ss_pred CCCCCcCcHHHH
Q 013508 218 DLMDKGTNALDV 229 (441)
Q Consensus 218 D~~~~~~~~~~~ 229 (441)
|....+..+..+
T Consensus 251 D~~~~~g~~l~i 262 (433)
T 2xxa_A 251 DGDARGGAALSI 262 (433)
T ss_dssp TSSSCCTHHHHH
T ss_pred CCCccHHHHHHH
Confidence 987655444433
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=5.3e-05 Score=73.16 Aligned_cols=80 Identities=25% Similarity=0.383 Sum_probs=48.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDL 219 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~ 219 (441)
.++.++||+|.... .......+..+.+. + .++-.++++++.. .++++..++.+......+++|+||.|.
T Consensus 212 ~d~vliDtaG~~~~-----~~~l~~eL~~i~ra-l-~~de~llvLDa~t----~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSET-----NRNLMDEMKKIARV-T-KPNLVIFVGDALA----GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCT-----TTCHHHHHHHHHHH-H-CCSEEEEEEEGGG----TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhH-----HHHHHHHHHHHHHH-h-cCCCCEEEEecHH----HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 36788999999653 23344444343332 2 3666666665433 356677777765444568999999998
Q ss_pred CCCcCcHHHHH
Q 013508 220 MDKGTNALDVL 230 (441)
Q Consensus 220 ~~~~~~~~~~l 230 (441)
...+..+..++
T Consensus 281 ~a~~G~~l~~~ 291 (328)
T 3e70_C 281 DARGGAALSIS 291 (328)
T ss_dssp CSCCHHHHHHH
T ss_pred ccchhHHHHHH
Confidence 66555444443
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.84 E-value=4.6e-05 Score=72.82 Aligned_cols=85 Identities=18% Similarity=0.249 Sum_probs=47.8
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
++.++||+|...... .....+..+-..+.+.....|+.+++++++.. .++.+..++.+......+++++||.|..
T Consensus 186 d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t----~~~~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 186 DLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWLVLDAVT----GQNGLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp SEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB----CTHHHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred CEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH----HHHHHHHHHHHHHHcCCcEEEEECCccc
Confidence 567999999864311 00111222222334444556886666655433 2345555555433324589999999988
Q ss_pred CCcCcHHHHH
Q 013508 221 DKGTNALDVL 230 (441)
Q Consensus 221 ~~~~~~~~~l 230 (441)
..+..+..+.
T Consensus 261 a~gg~~l~i~ 270 (304)
T 1rj9_A 261 AKGGVLIPIV 270 (304)
T ss_dssp CCCTTHHHHH
T ss_pred ccccHHHHHH
Confidence 7766555553
No 222
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.82 E-value=3.7e-05 Score=73.57 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhh----c-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEE
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYV----E-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGV 213 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi----~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~V 213 (441)
.+++.|+||||.... .....+.+..+ ...+ . .++.+++++.+ .. .+++++.++.+.+.-.-+-+|
T Consensus 186 ~~dvvIiDtpg~~~~-----~~~l~~eL~~l-~~~i~~~i~~~p~~vllVlda-~t---~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 186 NKDVVIIDTAGRLHT-----KKNLMEELRKV-HRVVKKKIPDAPHETLLVIDA-TT---GQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp TCSEEEEEECCCCSC-----HHHHHHHHHHH-HHHGGGTCTTCCSEEEEEEEG-GG---HHHHHHHHHHHHHHSCCCEEE
T ss_pred CCCEEEEECCCchhh-----HHHHHHHHHHH-HHHHhhccCCCCcEEEEEEEC-CC---CHHHHHHHHHHHhcCCCCEEE
Confidence 468999999996332 12222223222 2222 2 36766666543 32 345555555544333346678
Q ss_pred eccCCCCCCcCcHHHHH
Q 013508 214 LTKLDLMDKGTNALDVL 230 (441)
Q Consensus 214 ltK~D~~~~~~~~~~~l 230 (441)
+||.|....+..+..+.
T Consensus 256 lTk~D~~~~gG~~l~~~ 272 (306)
T 1vma_A 256 LTKLDGTAKGGITLAIA 272 (306)
T ss_dssp EECGGGCSCTTHHHHHH
T ss_pred EeCCCCccchHHHHHHH
Confidence 99999887776555554
No 223
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.77 E-value=1.7e-06 Score=78.72 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
..+.|+|+|.+|+|||||+++|++..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999997643
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.59 E-value=0.00041 Score=66.69 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=46.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHH---HHHHhhc-CCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEe
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIES---MVRSYVE-KPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVL 214 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~---~v~~yi~-~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~Vl 214 (441)
..+++||||||..... ......+.. .+...+. .++.+++++.+ .. .++++..++.+.+.-.-+=+|+
T Consensus 191 ~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a-~~---~~~~l~~~~~~~~~~~i~GvVl 261 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLLVIDA-TT---GQNGVIQAEEFSKVADVSGIIL 261 (320)
T ss_dssp TCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEEEEEG-GG---THHHHHHHHHHTTTSCCCEEEE
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEEEEEC-CC---cHHHHHHHHHHhhcCCCcEEEE
Confidence 4689999999986531 111111111 1111122 36766666644 32 3566666677765434455789
Q ss_pred ccCCCCCCcCcHHHHH
Q 013508 215 TKLDLMDKGTNALDVL 230 (441)
Q Consensus 215 tK~D~~~~~~~~~~~l 230 (441)
||+|....+..+..+.
T Consensus 262 tk~d~~~~~g~~~~~~ 277 (320)
T 1zu4_A 262 TKMDSTSKGGIGLAIK 277 (320)
T ss_dssp ECGGGCSCTTHHHHHH
T ss_pred eCCCCCCchhHHHHHH
Confidence 9999876665555443
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.57 E-value=0.00074 Score=64.18 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-.|+++|.+|+||||++..|.+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999875
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.53 E-value=0.00019 Score=71.53 Aligned_cols=80 Identities=26% Similarity=0.407 Sum_probs=45.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
..+++||||||..... ......+.. +...+ .++.+++++++. . .++++..++.+.+.-..+-+|+||+|
T Consensus 180 ~~DvVIIDTaG~l~~d-----~~l~~el~~-i~~~~-~pd~vlLVvDa~-t---gq~av~~a~~f~~~l~i~GVIlTKlD 248 (425)
T 2ffh_A 180 ARDLILVDTAGRLQID-----EPLMGELAR-LKEVL-GPDEVLLVLDAM-T---GQEALSVARAFDEKVGVTGLVLTKLD 248 (425)
T ss_dssp TCSEEEEECCCCSSCC-----HHHHHHHHH-HHHHH-CCSEEEEEEEGG-G---TTHHHHHHHHHHHHTCCCEEEEESGG
T ss_pred CCCEEEEcCCCccccc-----HHHHHHHHH-hhhcc-CCceEEEEEecc-c---hHHHHHHHHHHHhcCCceEEEEeCcC
Confidence 4589999999976531 111211111 11222 577777776543 2 35666666666543334677899999
Q ss_pred CCCCcCcHHHH
Q 013508 219 LMDKGTNALDV 229 (441)
Q Consensus 219 ~~~~~~~~~~~ 229 (441)
....+..+..+
T Consensus 249 ~~~~~g~alsi 259 (425)
T 2ffh_A 249 GDARGGAALSA 259 (425)
T ss_dssp GCSSCHHHHHH
T ss_pred CcccHHHHHHH
Confidence 86555444443
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00037 Score=67.97 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=46.5
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
+..++|+.|+..... ..+.++..+-..+.+....+|+-++|+++ +..+. +....++.+......+++++||.|..
T Consensus 242 d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC---CHHHHHHHHHHhcCCeEEEEecCccc
Confidence 457899999965321 00111222222334445567886777776 44332 22223333332234689999999988
Q ss_pred CCcCcHHHHH
Q 013508 221 DKGTNALDVL 230 (441)
Q Consensus 221 ~~~~~~~~~l 230 (441)
..+.....+.
T Consensus 317 ~~gG~~lsi~ 326 (359)
T 2og2_A 317 ARGGCVVSVV 326 (359)
T ss_dssp SCTHHHHHHH
T ss_pred ccccHHHHHH
Confidence 7766555554
No 228
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.33 E-value=0.00068 Score=64.41 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=44.7
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.+++.||||||..... ......+..+.. .+ .++.+++++.. .. .++.++.++.+.+.-...-+|+||+|
T Consensus 180 ~~D~viiDtpp~~~~d-----~~~~~~l~~~~~-~~-~~~~~~lv~~~-~~---~~~~~~~~~~~~~~~~i~givlnk~d 248 (295)
T 1ls1_A 180 ARDLILVDTAGRLQID-----EPLMGELARLKE-VL-GPDEVLLVLDA-MT---GQEALSVARAFDEKVGVTGLVLTKLD 248 (295)
T ss_dssp TCCEEEEECCCCSSCC-----HHHHHHHHHHHH-HH-CCSEEEEEEEG-GG---THHHHHHHHHHHHHTCCCEEEEECGG
T ss_pred CCCEEEEeCCCCcccc-----HHHHHHHHHHhh-hc-CCCEEEEEEeC-CC---cHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 4689999999986431 112222222222 22 47777666543 32 35555555555432223557899999
Q ss_pred CCCCcCcHHHHH
Q 013508 219 LMDKGTNALDVL 230 (441)
Q Consensus 219 ~~~~~~~~~~~l 230 (441)
....+..+..+.
T Consensus 249 ~~~~~g~~~~~~ 260 (295)
T 1ls1_A 249 GDARGGAALSAR 260 (295)
T ss_dssp GCSSCHHHHHHH
T ss_pred CCccHHHHHHHH
Confidence 876655445544
No 229
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00036 Score=66.54 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=44.7
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
+..++|+.|+..... ..+.++..+-..+.+..+.+|+-++|+++ +..+. +....++.+......+++++||.|..
T Consensus 185 d~~lldt~gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl---D~~~~~~~~~~~~g~t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL---NMLPQAREFNEVVGITGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCH-HHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG---GGHHHHHHHHHHTCCCEEEEECCSSC
T ss_pred cchHHhcCCCCcchh-HHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc---CHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 457899999965311 00111211111223334456776677776 44333 22222333332234689999999987
Q ss_pred CCcCcHHHHH
Q 013508 221 DKGTNALDVL 230 (441)
Q Consensus 221 ~~~~~~~~~l 230 (441)
..+.....+.
T Consensus 260 ~~~g~~l~~~ 269 (302)
T 3b9q_A 260 ARGGCVVSVV 269 (302)
T ss_dssp SCTHHHHHHH
T ss_pred CccChheehH
Confidence 6665555554
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.89 E-value=0.00039 Score=66.33 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|.+|||||||+|+|+|..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 479999999999999999999974
No 231
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.52 E-value=0.011 Score=52.26 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCC--CCCcEEEEecc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDP--TGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~--~~~r~i~VltK 216 (441)
..+++|||+||... ......+..+|.+|+++.+...+......++.++.+.. .+.+..+|+||
T Consensus 75 ~yD~viiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------------VITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSS---------------HHHHHHHHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCC---------------HHHHHHHHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 46899999998753 22334455688877777654332112223334443321 13466889999
Q ss_pred CCCC
Q 013508 217 LDLM 220 (441)
Q Consensus 217 ~D~~ 220 (441)
+|..
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9954
No 232
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.46 E-value=0.0095 Score=59.46 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=19.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (441)
..-.|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34457799999999999999775
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.05 E-value=0.0023 Score=56.85 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=26.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC--Cccccccccccc
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF--LPRGSGIVTRRP 75 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~--lP~~~~~~Tr~p 75 (441)
..|+++|+.|||||||+++|++..- +-.....+||.|
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p 58 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPP 58 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCC
Confidence 3589999999999999999997521 112334556666
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.81 E-value=0.0033 Score=55.33 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=26.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC--CCccccccccccc
Q 013508 41 VAVVGGQSSGKSSVLESVVGRD--FLPRGSGIVTRRP 75 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~--~lP~~~~~~Tr~p 75 (441)
|||+|+.|||||||++.|+... -+......+||.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 8999999999999999998541 1233445666655
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.80 E-value=0.0041 Score=54.26 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|+|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999986
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.79 E-value=0.006 Score=59.28 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|.+|||||||+|+|+|..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 368999999999999999999974
No 237
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.78 E-value=0.0019 Score=61.52 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=42.8
Q ss_pred CcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCC
Q 013508 141 NLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLM 220 (441)
Q Consensus 141 ~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~ 220 (441)
.+.++|| ..+. +.+.+.|++++|++|++++..+.+......-+++..+...+.+.++|+||+|+.
T Consensus 64 ~~~iwD~--qer~-------------~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 64 SGVIENV--LHRK-------------NLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 128 (301)
T ss_dssp SEEEEEE--CCCS-------------CEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGC
T ss_pred eEEEEEE--cccc-------------ceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcC
Confidence 7899999 2111 245567999999988887655433211222223323333478999999999997
Q ss_pred CC
Q 013508 221 DK 222 (441)
Q Consensus 221 ~~ 222 (441)
+.
T Consensus 129 ~~ 130 (301)
T 1u0l_A 129 DE 130 (301)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.76 E-value=0.0039 Score=54.31 Aligned_cols=22 Identities=9% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.74 E-value=0.004 Score=55.24 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.|||||||++.|+|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.66 E-value=0.0057 Score=54.65 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|+.|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999986
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.63 E-value=0.0056 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.+|||||||++.|.|.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999999997
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.60 E-value=0.0047 Score=55.07 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|+|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999996
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.54 E-value=0.0075 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRDF 63 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~~ 63 (441)
-.++++|++|||||||+|+|.|..-
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4689999999999999999999753
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.52 E-value=0.0053 Score=54.24 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.|||||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 245
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.44 E-value=0.0071 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999974
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.44 E-value=0.0057 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
--.|+|+|++|||||||++.|.|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999986
No 247
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.39 E-value=0.0095 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999973
No 248
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.39 E-value=0.0082 Score=56.22 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999999973
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.39 E-value=0.0082 Score=55.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.37 E-value=0.0063 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.|||||||++.|+|.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999986
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.37 E-value=0.0064 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++|+|+.|||||||++.|+|..
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999973
No 252
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.31 E-value=0.0075 Score=54.65 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999974
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.29 E-value=0.0069 Score=54.58 Aligned_cols=22 Identities=14% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.|||||||++.|+|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999996
No 254
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.29 E-value=0.0089 Score=53.79 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 255
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.23 E-value=0.0095 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.|||||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999984
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.20 E-value=0.0094 Score=51.77 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=22.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.|+++|..|||||||++.|++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3688999999999999999999975
No 257
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.19 E-value=0.0099 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|+|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999997
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.16 E-value=0.011 Score=54.02 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999983
No 259
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.15 E-value=0.01 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.++++|++|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 578999999999999998654
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.14 E-value=0.011 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999974
No 261
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.13 E-value=0.021 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
...|+|+|.++||||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999875
No 262
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.12 E-value=0.011 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999983
No 263
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.11 E-value=0.01 Score=57.87 Aligned_cols=30 Identities=20% Similarity=0.545 Sum_probs=24.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIV 71 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~ 71 (441)
.|+|+|+.|||||||+++|+|. +|...+.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~--~~~~~g~I 206 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE--IPFDQRLI 206 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT--SCTTSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc--CCCCceEE
Confidence 5999999999999999999996 34344443
No 264
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.11 E-value=0.01 Score=55.09 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999973
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.03 E-value=0.0091 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.|||||||+++|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999997
No 266
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.03 E-value=0.012 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999984
No 267
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.03 E-value=0.012 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
.++++|+.|||||||++.|+|.. -|.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~-~p~ 53 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT-SGK 53 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC-CCC
Confidence 57899999999999999999984 344
No 268
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=95.02 E-value=0.011 Score=57.53 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=48.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccc---------ccHHHHHHHHHhCC----
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDI---------ATSDAMKLAREVDP---- 205 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~---------~~~~~l~l~~~~~~---- 205 (441)
...+.++||+|.... +.++..|+++++++|++++.++.+- .-.++..+...+..
T Consensus 192 ~~~l~iwDt~GQe~~-------------r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQRSE-------------RKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCchhh-------------hHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 457899999997543 4677889999999999887655221 12344444444432
Q ss_pred CCCcEEEEeccCCCC
Q 013508 206 TGERTFGVLTKLDLM 220 (441)
Q Consensus 206 ~~~r~i~VltK~D~~ 220 (441)
.+.++|+|+||+|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 368999999999985
No 269
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.01 E-value=0.012 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 270
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.00 E-value=0.0099 Score=50.93 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.++||||||.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 271
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.99 E-value=0.01 Score=50.71 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|+|.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999973
No 272
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.98 E-value=0.012 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999973
No 273
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.97 E-value=0.012 Score=54.46 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999974
No 274
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.91 E-value=0.011 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..|+++|.+||||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999999873
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.89 E-value=0.011 Score=60.50 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcccccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVT 72 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~~~T 72 (441)
.|+|+|+.||||||++++|+|. +|.+.+++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~--i~~~~giit 292 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF--IPPDAKVVS 292 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG--SCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhh--CCCCCCEEE
Confidence 3999999999999999999986 355555544
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.88 E-value=0.01 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.595 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.|||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 277
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.87 E-value=0.014 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999999974
No 278
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.87 E-value=0.013 Score=54.09 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.87 E-value=0.014 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 280
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.84 E-value=0.011 Score=56.06 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.|||||||++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 5899999999999999999986
No 281
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.83 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 282
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.81 E-value=0.011 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|+.||||||++++|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999996
No 283
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.78 E-value=0.015 Score=54.48 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 284
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.78 E-value=0.014 Score=54.29 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999999974
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.75 E-value=0.012 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.+|||||||++.|.|.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 286
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.75 E-value=0.017 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHh---CCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~---G~~~ 63 (441)
...|+|+|.+||||||+++.|. |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3579999999999999999999 8753
No 287
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.73 E-value=0.017 Score=49.09 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.8
Q ss_pred CeEEEECCCCCcHHHHHHHH
Q 013508 39 PSVAVVGGQSSGKSSVLESV 58 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL 58 (441)
+.|+++|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.72 E-value=0.013 Score=51.21 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.+||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.72 E-value=0.011 Score=52.93 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|+.|||||||++.|+|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999997
No 290
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.68 E-value=0.015 Score=56.66 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=43.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc---------cccHHHHHHHHHhCC----
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVDP---- 205 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~---------~~~~~~l~l~~~~~~---- 205 (441)
...+.++||||.... +.++..|+++.+++|++++.++.| -.-.++..+...+..
T Consensus 200 ~~~l~i~Dt~Gq~~~-------------r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------------RKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccchhhh-------------hhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 467899999998442 467778999999999988765521 112333444444321
Q ss_pred CCCcEEEEeccCCCC
Q 013508 206 TGERTFGVLTKLDLM 220 (441)
Q Consensus 206 ~~~r~i~VltK~D~~ 220 (441)
.+.++|+|+||+|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 368999999999986
No 291
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.68 E-value=0.0072 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
+.|+|+|..+||||||++.|+|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999986
No 292
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.56 E-value=0.023 Score=53.86 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-.++++|+.|||||||+|+|+ .
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S
T ss_pred cEEEEECCCCCCHHHHHHHHH-H
Confidence 368999999999999999999 5
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.53 E-value=0.019 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
.++++|+.|||||||++.|+|.. |.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~--p~ 56 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL--PY 56 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS--CC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--CC
Confidence 57899999999999999999984 64
No 294
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=94.53 E-value=0.026 Score=54.39 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc---------cccccHHHHHHHHHhC----
Q 013508 138 NVVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN---------QDIATSDAMKLAREVD---- 204 (441)
Q Consensus 138 ~~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~---------~~~~~~~~l~l~~~~~---- 204 (441)
+...+.++||+|-.+ .+.++..|.++++++|++++.+. ..-.-.+++.+...+.
T Consensus 159 ~~v~l~iwDtaGQe~-------------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 159 KDIPFHLIDVGGQRS-------------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSCEEEEEECCSCHH-------------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeccccCCCccc-------------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc
Confidence 356899999999743 26889999999999999886541 1111223333333332
Q ss_pred CCCCcEEEEeccCCCCC
Q 013508 205 PTGERTFGVLTKLDLMD 221 (441)
Q Consensus 205 ~~~~r~i~VltK~D~~~ 221 (441)
..+.++++|+||+|+..
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 24679999999999864
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.48 E-value=0.022 Score=51.01 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCccccc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLPRGSG 69 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP~~~~ 69 (441)
.++++|+++||||||++.|+|.-..|.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g 56 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 56 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccC
Confidence 588999999999999999999544444444
No 296
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.45 E-value=0.014 Score=55.41 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|||+.|||||||++.|+|.-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999999973
No 297
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.45 E-value=0.016 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.+||||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999986
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.44 E-value=0.016 Score=49.75 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.1
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.++|||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 299
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.43 E-value=0.02 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=21.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-..|+|+|.+||||||+.+.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4456999999999999999999864
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.43 E-value=0.022 Score=48.45 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.38 E-value=0.016 Score=55.24 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.|||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 5889999999999999999986
No 302
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.35 E-value=0.014 Score=52.91 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=15.5
Q ss_pred CeEEEECCCCCcHHHHHHHHh-CC
Q 013508 39 PSVAVVGGQSSGKSSVLESVV-GR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~-G~ 61 (441)
..|+++|+.+||||||++.|. |.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358899999999999999999 86
No 303
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.33 E-value=0.0088 Score=56.83 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 168 SMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 168 ~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
.+.+.|+.+.|.++++++..+.++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcc
Confidence 34556899999888877654433322222223333333578999999999998653
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.31 E-value=0.02 Score=51.40 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.+||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 305
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.30 E-value=0.034 Score=49.15 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+|+|.++|||||+++.|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999874
No 306
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.23 E-value=0.13 Score=46.51 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+++|||+|+-... .....+..+|.+|+++.+....+.. ....++++.+.. .+..+|+||.
T Consensus 131 ~yD~viiD~pp~~~~---------------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~--~~~~~v~N~~ 193 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH---------------LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI--KKVRYVINKV 193 (254)
T ss_dssp CCSEEEEEECTTCTT---------------CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC--SCEEEEEEEE
T ss_pred CCCEEEEeCCCcccH---------------HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC--ccEEEEEeCC
Confidence 568999999886542 1223456788888877664433211 122233444432 5678899999
Q ss_pred C
Q 013508 218 D 218 (441)
Q Consensus 218 D 218 (441)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 307
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.19 E-value=0.018 Score=55.95 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.||||||++++|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5999999999999999999986
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.18 E-value=0.022 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999983
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.10 E-value=0.021 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|..||||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 310
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.02 E-value=0.028 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.++|||||+.+.|.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999999873
No 311
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.96 E-value=0.021 Score=52.53 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHh---CCCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVV---GRDF 63 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~---G~~~ 63 (441)
-..|+++|..||||||+++.|. |..+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 3579999999999999999999 8754
No 312
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.96 E-value=0.029 Score=48.08 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999986
No 313
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.95 E-value=0.028 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 58899999999999999999974
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.95 E-value=0.035 Score=47.82 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.|+++|.+|||||||++.|++.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999864
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.94 E-value=0.023 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.87 E-value=0.025 Score=49.87 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
...|+++|.+||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 317
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.87 E-value=0.022 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
...+|+|+.+||||||+++|.+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999875
No 318
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.86 E-value=0.029 Score=54.40 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999984
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.86 E-value=0.034 Score=48.73 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999763
No 320
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.82 E-value=0.024 Score=49.98 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+|+|.++|||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999987
No 321
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.80 E-value=0.023 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++|+|+.|||||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999973
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.79 E-value=0.03 Score=49.56 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+|+|.++|||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999986
No 323
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.76 E-value=0.031 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999999984
No 324
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.76 E-value=0.028 Score=54.59 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999984
No 325
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.75 E-value=0.032 Score=54.29 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 58899999999999999999984
No 326
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.70 E-value=0.033 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58899999999999999999984
No 327
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.69 E-value=0.047 Score=53.84 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=47.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccc---------cccHHHHHHHHHhC----C
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQD---------IATSDAMKLAREVD----P 205 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~---------~~~~~~l~l~~~~~----~ 205 (441)
...+.|+||+|-.+. +.++..|+++++++|++++.++.| -.-..+..+...+. .
T Consensus 216 ~v~l~iwDtaGQe~~-------------r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~ 282 (402)
T 1azs_C 216 KVNFHMFDVGGQRDE-------------RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL 282 (402)
T ss_dssp TEEEEEEEECCSGGG-------------GGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTC
T ss_pred Cccceecccchhhhh-------------hhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccC
Confidence 467899999998543 467888999999999988765411 11123344444432 2
Q ss_pred CCCcEEEEeccCCCC
Q 013508 206 TGERTFGVLTKLDLM 220 (441)
Q Consensus 206 ~~~r~i~VltK~D~~ 220 (441)
.+.++|+|+||+|+.
T Consensus 283 ~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 283 RTISVILFLNKQDLL 297 (402)
T ss_dssp SSCCEEEEEECHHHH
T ss_pred CCCeEEEEEEChhhh
Confidence 367899999999985
No 328
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.69 E-value=0.03 Score=53.70 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccC---------ccccccHHHHHHHHHhCC----
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPA---------NQDIATSDAMKLAREVDP---- 205 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a---------~~~~~~~~~l~l~~~~~~---- 205 (441)
...+.++||.|-.+ .+.++..|.++++++|+++.-+ +..-.-.+++.+...+..
T Consensus 166 ~v~l~iwDtgGQe~-------------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 166 SVIFRMVDVGGQRS-------------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp TEEEEEEEECCSHH-------------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEcCCchh-------------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 46789999999743 2577889999999999988322 111112344445554422
Q ss_pred CCCcEEEEeccCCCCC
Q 013508 206 TGERTFGVLTKLDLMD 221 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~ 221 (441)
.+.++++++||+|+..
T Consensus 233 ~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLE 248 (327)
T ss_dssp TTCEEEEEEECHHHHH
T ss_pred CCceEEEEEECchhhh
Confidence 3679999999999864
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.63 E-value=0.034 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58899999999999999999984
No 330
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.62 E-value=0.025 Score=48.90 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-++++|++|+|||||+.++.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999875
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.60 E-value=0.023 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-..++++|++++|||||++++.|.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999986
No 332
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.55 E-value=0.036 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.||||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999999984
No 333
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.54 E-value=0.028 Score=55.84 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.||||||++++|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999996
No 334
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.53 E-value=0.028 Score=54.99 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.||||||++++|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 335
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.48 E-value=0.04 Score=47.26 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|+++|.+||||||+.++|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999854
No 336
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.47 E-value=0.027 Score=53.52 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.|||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.37 E-value=0.022 Score=54.45 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..|.++|+|..|||||||+|.|+|..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999999864
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.35 E-value=0.03 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58899999999999999999984
No 339
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.35 E-value=0.043 Score=47.52 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+|+|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 340
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.34 E-value=0.14 Score=45.61 Aligned_cols=94 Identities=14% Similarity=0.208 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCccccc-cHHHH-HHHHHhCC----CCCcEEEEeccC-CCCCCcC--cHHHHHcCccc
Q 013508 165 DIESMVRSYVEKPNSVILAISPANQDIA-TSDAM-KLAREVDP----TGERTFGVLTKL-DLMDKGT--NALDVLEGRSY 235 (441)
Q Consensus 165 ~i~~~v~~yi~~~~~iil~v~~a~~~~~-~~~~l-~l~~~~~~----~~~r~i~VltK~-D~~~~~~--~~~~~l~~~~~ 235 (441)
.++.+++.|..+.|+||+||+++..+.. ..+.+ ++.+.+++ .+.+.++..||. |+...-+ ++.+.+.-..
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~- 192 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL- 192 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG-
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC-
Confidence 3578999999999999999987655321 22222 12222222 366888888996 5532211 2333332222
Q ss_pred ccCCCeE--EEEeCChhhhccCCcHHH
Q 013508 236 RLQHPWV--GIVNRSQADINRNIDMIV 260 (441)
Q Consensus 236 ~l~~g~~--~v~~~s~~~~~~~~~~~~ 260 (441)
+...|+ ++.+.++.++.++++|+.
T Consensus 193 -l~R~W~Iq~csA~TGeGL~EGLdWL~ 218 (227)
T 3l82_B 193 -LNHPWLVQDTEAETLTGFLNGIEWIL 218 (227)
T ss_dssp -GCSCEEEEEEETTTCTTHHHHHHHHT
T ss_pred -CCCCEEEEEeECCCCcCHHHHHHHHH
Confidence 246787 455566666666655543
No 341
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.32 E-value=0.042 Score=46.23 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
+..+|+|+.+|||||+++||.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999986
No 342
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.32 E-value=0.038 Score=47.88 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+|+|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 343
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.29 E-value=0.042 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
-.++++|+.|||||||++.|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3588999999999999999994
No 344
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.21 E-value=0.092 Score=49.16 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...+.+++.++|.++.++++ ..+..... ..+.+.+ .+++.++|+||+|+.+.
T Consensus 14 ~~~~~~~l~~aDvVl~VvDA-r~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 14 RREVTEKLKLIDIVYELVDA-RIPMSSRN-PMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHHGGGCSEEEEEEET-TSTTTTSC-HHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEEeC-CCCCccCC-HHHHHHH--CCCCEEEEEECcccCCH
Confidence 46778889999988777754 33332221 1223333 46899999999999874
No 345
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.19 E-value=0.052 Score=47.77 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.+||||||+...|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 346
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.18 E-value=0.046 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
|.|+++|.++|||||+-..|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999885
No 347
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.13 E-value=0.053 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (441)
.+.|+++|.++|||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999995
No 348
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.13 E-value=0.053 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+.|+++|.++|||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999654
No 349
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.10 E-value=0.049 Score=47.05 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 013508 40 SVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (441)
.|+++|.++|||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 350
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.09 E-value=0.051 Score=46.61 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999964
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.00 E-value=0.035 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|..+|||||+++.|.|.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999986
No 352
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.93 E-value=0.042 Score=52.55 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|++|||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 353
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.93 E-value=0.029 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.560 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999974
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.93 E-value=0.056 Score=48.06 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 013508 40 SVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (441)
.|+|+|.++|||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999995
No 355
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.92 E-value=0.048 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|.|..
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999973
No 356
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.92 E-value=0.047 Score=47.42 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999863
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.89 E-value=0.054 Score=47.72 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 358
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=92.88 E-value=0.034 Score=53.96 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=45.8
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCc--------ccc-ccHHHHHHHHHhC----C
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPAN--------QDI-ATSDAMKLAREVD----P 205 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~--------~~~-~~~~~l~l~~~~~----~ 205 (441)
...+.++||+|-.+. +.++..|+++++++|++++-+. .+. .-.++..+...+. .
T Consensus 182 ~v~l~iwDtaGQe~~-------------r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~ 248 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNE-------------RRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248 (354)
T ss_dssp --EEEEEEECCSTTG-------------GGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred ceeeEEEECCCchhh-------------hHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcccc
Confidence 457899999998543 4677889999999998886431 011 1123334444432 1
Q ss_pred CCCcEEEEeccCCCCC
Q 013508 206 TGERTFGVLTKLDLMD 221 (441)
Q Consensus 206 ~~~r~i~VltK~D~~~ 221 (441)
.+.++|+|.||+|+..
T Consensus 249 ~~~piiLvgNK~DL~~ 264 (354)
T 2xtz_A 249 EKTSFMLFLNKFDIFE 264 (354)
T ss_dssp SSCEEEEEEECHHHHH
T ss_pred CCCeEEEEEECcchhh
Confidence 3679999999999853
No 359
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.84 E-value=0.11 Score=50.31 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+.|+++|.+++||||+..+|.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999999988864
No 360
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.45 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|+||+|||++..|+.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.81 E-value=0.063 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.++|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 362
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.04 Score=55.45 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.-+.++|+|+.|||||||++.|+|.-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999999974
No 363
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.74 E-value=0.06 Score=46.34 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCCeEEEECCCCCcHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (441)
..+.|+++|.++|||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.71 E-value=0.064 Score=46.62 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
..+.|+++|.++|||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.70 E-value=0.062 Score=47.76 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999963
No 366
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.70 E-value=0.059 Score=46.91 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999974
No 367
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.55 E-value=0.068 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
+.|+++|.++|||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999863
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.54 E-value=0.054 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.++|||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.53 E-value=0.051 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
++++|++|+|||||+++|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999986
No 370
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.49 E-value=0.086 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred CCC-eEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALP-SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP-~IvVvG~~ssGKSSllnaL~G 60 (441)
..| .|+++|.++|||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344 689999999999999999863
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.47 E-value=0.066 Score=46.39 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|++.|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 372
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.42 E-value=0.069 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998863
No 373
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.38 E-value=0.074 Score=51.86 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 165 DIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 165 ~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
..++++..|.+..+.++++++..+ . ...+...++++.. +.+.++|+||+|+.++.
T Consensus 58 ~f~~~l~~i~~~~~~il~VvD~~d--~-~~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 58 DFLRILNGIGKSDALVVKIVDIFD--F-NGSWLPGLHRFVG-NNKVLLVGNKADLIPKS 112 (368)
T ss_dssp HHHHHHHHHHHSCCEEEEEEETTS--H-HHHCCTTHHHHSS-SSCEEEEEECGGGSCTT
T ss_pred HHHHHHHHHhccCcEEEEEEECCC--C-cccHHHHHHHHhC-CCcEEEEEEChhcCCcc
Confidence 346778888888887777765533 1 1222222333322 68999999999998654
No 374
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.34 E-value=0.056 Score=49.43 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
++++|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 375
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.29 E-value=0.082 Score=44.76 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.27 E-value=0.072 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
+.|+++|.++|||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.25 E-value=0.072 Score=51.88 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHh
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~ 59 (441)
..+..+|+|+.||||||++++|+
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34468899999999999999998
No 378
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.23 E-value=0.064 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
-..|+++|.++|||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 379
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.22 E-value=0.075 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 380
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.20 E-value=0.077 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.++|||||+.+.|.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.20 E-value=0.06 Score=48.08 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++++|++|||||||+..|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999965
No 382
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.16 E-value=0.032 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.10 E-value=0.068 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999974
No 384
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.07 E-value=0.1 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||++.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999974
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.97 E-value=0.079 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
.+.|+++|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.90 E-value=0.083 Score=47.45 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
...|+++|.++|||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 387
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.89 E-value=0.078 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999973
No 388
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.89 E-value=0.11 Score=49.89 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
...++++|++|+|||||+++|.|.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999875
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.88 E-value=0.059 Score=50.62 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|+|++|+|||||+..|+|.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 390
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.85 E-value=0.1 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999974
No 391
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.4 Score=47.54 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.2
Q ss_pred CCCe-EEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPS-VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~-IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+ |.+.|+||+|||++..|+.+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3444 999999999999999999864
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.77 E-value=0.1 Score=46.62 Aligned_cols=22 Identities=14% Similarity=0.290 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 393
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=91.73 E-value=0.8 Score=50.02 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHH--------hCCCCCccc
Q 013508 40 SVAVVGGQSSGKSSVLESV--------VGRDFLPRG 67 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL--------~G~~~lP~~ 67 (441)
.++++|+.++||||+++.+ .|.. .|..
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-vpa~ 698 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-VPCE 698 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-BSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-cccc
Confidence 4889999999999999999 7763 4544
No 394
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.72 E-value=0.22 Score=46.63 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
-|+++|.+||||||+...|..
T Consensus 35 livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999975
No 395
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.72 E-value=0.12 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.539 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999973
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.65 E-value=0.091 Score=46.77 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+|+|.++|||||+.+.|.+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 397
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.64 E-value=0.083 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
+.|+++|.++|||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.63 E-value=0.077 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 399
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.62 E-value=0.073 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
-.++++|+.|||||||+++|.|..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 468899999999999999999963
No 400
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.58 E-value=0.093 Score=46.63 Aligned_cols=21 Identities=14% Similarity=0.390 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+|+|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 401
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.096 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|+|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999974
No 402
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.53 E-value=0.078 Score=49.27 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~ 61 (441)
|+++|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999985
No 403
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.50 E-value=0.093 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999973
No 404
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.48 E-value=0.11 Score=45.53 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
|.|++.|.++|||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 405
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.48 E-value=0.1 Score=45.84 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+|+|.++|||||+.+.|..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 406
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.43 E-value=0.09 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+|+|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 407
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.42 E-value=0.098 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999999974
No 408
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.41 E-value=0.084 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
-..|+++|.++|||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999965
No 409
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.39 E-value=0.088 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 48999999999999999999973
No 410
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.36 E-value=0.19 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=20.2
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.+||||||+...|.+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999764
No 411
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.26 E-value=0.097 Score=45.74 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
...|+|+|.++|||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999864
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.19 E-value=0.12 Score=46.38 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 413
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.18 E-value=0.088 Score=54.85 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 58999999999999999999973
No 414
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.15 E-value=0.085 Score=54.92 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999999973
No 415
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.15 E-value=0.12 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHh
Q 013508 38 LPSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~ 59 (441)
...|+++|.++|||||+.+.|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999985
No 416
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.13 E-value=0.11 Score=47.67 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=19.1
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
-|+|+|.++||||||...|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999974
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.13 E-value=0.087 Score=51.50 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|++|+|||||+++|.|.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999974
No 418
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.07 E-value=0.12 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
+..+|+|+.+|||||+++||.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468899999999999999986
No 419
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.00 E-value=0.079 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999999973
No 420
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.96 E-value=0.098 Score=46.32 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.++++|++++|||||+..|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999998
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.89 E-value=0.1 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|+++|.++|||||+.+.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999764
No 422
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.82 E-value=0.25 Score=43.90 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.+++.|+||+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999888864
No 423
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.81 E-value=0.12 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.0
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
-..|+++|.++|||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999864
No 424
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.81 E-value=0.1 Score=46.95 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCCCCc
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRDFLP 65 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~~lP 65 (441)
.++++|++++|||||+..|++.-.+|
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 58899999999999999999853333
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.79 E-value=0.092 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|.-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999973
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.72 E-value=0.14 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=20.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
...|+++|.++|||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999963
No 427
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.61 E-value=0.82 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|+||+|||++..|+.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 428
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.60 E-value=0.16 Score=43.37 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=20.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+-++++|++|+|||++++++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999998754
No 429
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.53 E-value=0.14 Score=45.68 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 430
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.50 E-value=0.14 Score=46.26 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|++.|.++|||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999875
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.45 E-value=0.16 Score=45.83 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=19.9
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 432
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.22 E-value=1.6 Score=39.79 Aligned_cols=89 Identities=10% Similarity=0.172 Sum_probs=50.6
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHHHHHHHHhCCCCCcEEEEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~l~l~~~~~~~~~r~i~VltK~ 217 (441)
..+++|||+|+... ......+..+|.+|+++.+....... ...++.++.+.+ +.+..+|+|+.
T Consensus 144 ~yD~viiD~pp~~~---------------~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~-~~~~~vv~N~~ 207 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------------VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNL-FLPIFLIITRF 207 (267)
T ss_dssp TCSEEEEEECSSCS---------------HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTC-CCCEEEEEEEE
T ss_pred CCCEEEEECcCCcc---------------HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhc-cCCEEEEEecc
Confidence 46899999998643 23445566788888887664433211 122333444432 34677999999
Q ss_pred CCCCCcCcHHHHHcCcccccCCCeEEEEeCC
Q 013508 218 DLMDKGTNALDVLEGRSYRLQHPWVGIVNRS 248 (441)
Q Consensus 218 D~~~~~~~~~~~l~~~~~~l~~g~~~v~~~s 248 (441)
+......+..+.+.. ...+.+.++.+
T Consensus 208 ~~~~~~~~~~~~l~~-----~~~~~~~Ip~~ 233 (267)
T 3k9g_A 208 KKNRTHKTLFEILKT-----KDRFLGTISER 233 (267)
T ss_dssp CTTCSCCHHHHHHTT-----STTEEEEEEC-
T ss_pred cCcchHHHHHHHHhc-----CcccceecCcH
Confidence 544333344455442 34566666654
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.16 E-value=0.15 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.522 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCcc
Q 013508 41 VAVVGGQSSGKSSVLESVVGRDFLPR 66 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~~lP~ 66 (441)
++++|+.|||||||++.|+|.. -|.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~-~p~ 405 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL-KPD 405 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS-CCS
T ss_pred EEEECCCCCcHHHHHHHHhcCC-CCC
Confidence 7899999999999999999984 244
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.13 E-value=0.12 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|+|..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 435
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=0.92 Score=44.52 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|+||+|||++..|+.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 3899999999999999999864
No 436
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.95 E-value=0.18 Score=44.82 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|+|+|||+|.-..|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998853
No 437
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=89.93 E-value=0.63 Score=43.52 Aligned_cols=94 Identities=13% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHhhcCCCeEEEEeccCcccc-ccHHHHH-HHHHhC----CCCCcEEEEeccC-CCCCCcC--cHHHHHcCccccc
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDI-ATSDAMK-LAREVD----PTGERTFGVLTKL-DLMDKGT--NALDVLEGRSYRL 237 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~-~~~~~l~-l~~~~~----~~~~r~i~VltK~-D~~~~~~--~~~~~l~~~~~~l 237 (441)
+.+++.|..+.|++|+||+++..+- ...+.+. +.+-++ ..+.+.++..||- |+...-+ ++.+.+.-.. +
T Consensus 201 RplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~--l 278 (312)
T 3l2o_B 201 IPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL--L 278 (312)
T ss_dssp CHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG--G
T ss_pred HHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc--C
Confidence 6899999999999999998765532 2222221 112221 2467888888974 6643221 2233332222 2
Q ss_pred CCCeE--EEEeCChhhhccCCcHHHHH
Q 013508 238 QHPWV--GIVNRSQADINRNIDMIVAR 262 (441)
Q Consensus 238 ~~g~~--~v~~~s~~~~~~~~~~~~~~ 262 (441)
...|+ ++.+.++.++.++++++...
T Consensus 279 ~r~W~Iq~csA~tGeGL~EGldWL~~~ 305 (312)
T 3l2o_B 279 NHPWLVQDTEAETLTGFLNGIEWILEE 305 (312)
T ss_dssp CSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEecccCCCcCHHHHHHHHHHH
Confidence 46776 45667777777777766543
No 438
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.77 E-value=0.32 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|.++|.|++|+||||+++++.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 439
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=89.73 E-value=0.31 Score=46.09 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 169 MVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 169 ~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
+++..+.+.|.++++++....++.....-+++..+...+.+.++|+||+|+.++.
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCH
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchh
Confidence 3445678899777766543334433332334443445689999999999999764
No 440
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.70 E-value=0.038 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 013508 41 VAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 41 IvVvG~~ssGKSSllnaL~G~~ 62 (441)
++|+|+.+||||||+++|.|.-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 5789999999999999999974
No 441
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.70 E-value=1.2 Score=44.12 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|+||+|||++..|+.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 3999999999999999999864
No 442
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=89.65 E-value=0.16 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.8
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
...+++|+.+|||||+++||.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999985
No 443
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.63 E-value=0.21 Score=44.80 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+.|+|+|+|+|||+|....|...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999988743
No 444
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.62 E-value=0.49 Score=39.03 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|++|+|||++..+|...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999754
No 445
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.61 E-value=0.48 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=20.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
+.|+|+|+.+||||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.60 E-value=0.21 Score=45.34 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=19.5
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
..|+++|.++|||||+.+.|.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 447
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=89.59 E-value=0.1 Score=50.83 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCCc
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDKG 223 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~~ 223 (441)
++++..+...++.++++++..+.+ .+-.-.+.+.+. +.+.++|+||+|+.++.
T Consensus 62 ~~~L~~~~~~~~lil~VvD~~d~~--~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 62 LSMLHRIGESKALVVNIVDIFDFN--GSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHHCCEEEEEEETTCSG--GGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHHhhccCcEEEEEEECCCCC--CchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 567777777788777777654322 111111222222 68999999999998764
No 448
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.57 E-value=0.17 Score=46.17 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+|.|.++|||||+.+.|..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.45 E-value=0.19 Score=45.37 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
....|+++|.++|||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999975
No 450
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.43 E-value=0.14 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.+||||||++.|.|..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999974
No 451
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.43 E-value=0.14 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..|.++++|++|+||||++++|.|.
T Consensus 35 ~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4566999999999999999999884
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.43 E-value=0.19 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999975
No 453
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.24 E-value=0.16 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|+++|++|+||||++.+|.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.16 E-value=0.14 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.8
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
-.++|+|++|+|||||+..|++
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
No 455
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.11 E-value=0.18 Score=47.15 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 013508 40 SVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (441)
.|+|+|.++|||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999997
No 456
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=88.80 E-value=0.18 Score=48.93 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
....+++|+.++||||++++|.+.
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHh
Confidence 346889999999999999999863
No 457
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.73 E-value=0.25 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+-+++.|++|+|||+++.++...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
No 458
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.71 E-value=0.075 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..++++|+.|||||||+++|.+.
T Consensus 61 G~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999654
No 459
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.67 E-value=0.2 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..++|+|+.++|||||+++|.+.-
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 468899999999999999999864
No 460
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.58 E-value=0.15 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++|+|+.|||||||++.|+|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 461
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.52 E-value=0.2 Score=47.91 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+|.+++.|++|+||||++.++.+.
T Consensus 45 ~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 45 KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4667999999999999999999876
No 462
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.47 E-value=0.22 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
....+++|+.+||||||+++|..
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999999984
No 463
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.39 E-value=0.21 Score=42.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+-|+++|++|+|||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 464
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.28 E-value=0.28 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.+.+++.|++|+|||+++.++...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999998753
No 465
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.16 E-value=1.2 Score=44.54 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|+||+|||++..||.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 4899999999999999999864
No 466
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.07 E-value=1.5 Score=39.94 Aligned_cols=66 Identities=21% Similarity=0.166 Sum_probs=38.3
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEE-EEeccC
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTF-GVLTKL 217 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i-~VltK~ 217 (441)
..+++|||+|+..... .+....+..+|.+|+++.+.... .....+.++.+...+.+.+ +|+|+.
T Consensus 128 ~yD~ViID~pp~~~~~-------------~~~~~~~~~aD~viiv~~~~~~s--~~~~~~~~~~l~~~~~~~~gvV~N~~ 192 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA-------------PLTVMQDAKPTGVVVVSTPQELT--AVIVEKAINMAEETNTSVLGLVENMS 192 (262)
T ss_dssp SCSEEEEECCSSSSSH-------------HHHHHHHHCCSEEEEEECSSSCC--HHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCEEEEECcCCCchH-------------HHHHHhhccCCeEEEEecCccch--HHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 4689999999865320 11111122467777777654332 2334444444544566777 789998
Q ss_pred CC
Q 013508 218 DL 219 (441)
Q Consensus 218 D~ 219 (441)
|.
T Consensus 193 ~~ 194 (262)
T 2ph1_A 193 YF 194 (262)
T ss_dssp CE
T ss_pred cc
Confidence 84
No 467
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.93 E-value=0.26 Score=50.11 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G 60 (441)
+-|.++|+|.++||||+++++|+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999999875
No 468
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.90 E-value=0.32 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.3
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
+.|+|+|+.+||||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46899999999999999999743
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.81 E-value=0.32 Score=42.44 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.5
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-|++.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999864
No 470
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=87.57 E-value=0.25 Score=48.03 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=19.2
Q ss_pred CeEEEECCCCCcHHHHHHHHh
Q 013508 39 PSVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~ 59 (441)
.-.+++|+.||||||+|+||.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 568899999999999999985
No 471
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.49 E-value=0.19 Score=57.36 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|++||+.|||||||++.|.|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5999999999999999999986
No 472
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=87.39 E-value=2.7 Score=45.83 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.++|+|+.+|||||+|+.+.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 588999999999999998864
No 473
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.28 E-value=0.26 Score=56.24 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.++|||+.|||||||++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5999999999999999999997
No 474
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.28 E-value=0.16 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|..|||||||+++|.|.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5889999999999999999986
No 475
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.26 E-value=0.21 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=17.5
Q ss_pred CCeEEEECCCCCcHHHHHHHHhC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G 60 (441)
.+.|+|.|+.+|||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 476
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.22 E-value=0.59 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+.|++.|++|+|||++..++...
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999754
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.13 E-value=0.3 Score=48.30 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.4
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|+++|.++|||||+.+.|..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999974
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.93 E-value=0.36 Score=42.58 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.7
Q ss_pred CeEEEECCCCCcHHHHHHHHhCC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.-|+++|++++|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999866
No 479
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.81 E-value=0.24 Score=45.57 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=21.4
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
....|+|.|..||||||+.+.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999998754
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.78 E-value=0.48 Score=39.02 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
-|.+.|++|+|||++..+|...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 3889999999999999999765
No 481
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.46 E-value=0.31 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.+++||+.|||||||++.|.|.-
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 482
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.38 E-value=0.42 Score=42.22 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
-++|.|++|+||||++.++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.37 E-value=0.34 Score=43.81 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|++.|..+|||||+.+.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 484
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.27 E-value=0.75 Score=40.60 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=40.2
Q ss_pred CCCcEEEeCCCC-CcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCcccccc-HHHHHHHHHhCCCCCcEEEEecc
Q 013508 139 VVNLTLIDLPGL-TKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIAT-SDAMKLAREVDPTGERTFGVLTK 216 (441)
Q Consensus 139 ~~~l~lvDtPGi-~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~-~~~l~l~~~~~~~~~r~i~VltK 216 (441)
..+++|||+|+. ... .+...+..+|.+|+++.+...+... ...++.++.+. +.+..+|+|+
T Consensus 67 ~yD~viiD~p~~~~~~---------------~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------------DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLG--NNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS---------------HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC--SSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH---------------HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc--CCCEEEEEEe
Confidence 468999999987 431 2334556788877777654433211 22233444332 5668889999
Q ss_pred CCCCC
Q 013508 217 LDLMD 221 (441)
Q Consensus 217 ~D~~~ 221 (441)
+|...
T Consensus 130 ~~~~~ 134 (209)
T 3cwq_A 130 IPPYP 134 (209)
T ss_dssp BCCTT
T ss_pred cCCcc
Confidence 98654
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.19 E-value=0.31 Score=53.38 Aligned_cols=23 Identities=17% Similarity=0.459 Sum_probs=20.4
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.++++|+.|||||||++.|.|..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999543
No 486
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.05 E-value=0.36 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.++|+|++++|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999777754
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.94 E-value=0.29 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.227 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHhCCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
.+.|+|++|||||||+..|++.-
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999864
No 488
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.93 E-value=0.86 Score=41.82 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.2
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..+-+.+.|++|+|||++..++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456889999999999999999753
No 489
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.90 E-value=2.1 Score=45.88 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=22.1
Q ss_pred cCCCe-EEEECCCCCcHHHHHHHHhCC
Q 013508 36 EALPS-VAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 36 ~~lP~-IvVvG~~ssGKSSllnaL~G~ 61 (441)
...|+ |.+.|+||+|||+|..++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34454 999999999999999999875
No 490
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.73 E-value=0.47 Score=44.13 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.3
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..-|.+.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456899999999999999999874
No 491
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.66 E-value=1.3 Score=41.24 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCeEEEECCCCCcHHHHHHHHhCC
Q 013508 38 LPSVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 38 lP~IvVvG~~ssGKSSllnaL~G~ 61 (441)
..-|++.|++|+|||++..++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999877643
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.53 E-value=0.42 Score=45.84 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+|+|+.+||||||...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 6899999999999999998753
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.47 E-value=0.46 Score=42.36 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=19.6
Q ss_pred CeEEEECCCCCcHHHHHHHHhC
Q 013508 39 PSVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 39 P~IvVvG~~ssGKSSllnaL~G 60 (441)
..|++.|..+|||||+++.|..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.35 E-value=0.5 Score=46.14 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCCeEEEECCCCCcHHHHHHHHhCCC
Q 013508 37 ALPSVAVVGGQSSGKSSVLESVVGRD 62 (441)
Q Consensus 37 ~lP~IvVvG~~ssGKSSllnaL~G~~ 62 (441)
..+.++|+|.++||||++++.|++.-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 56889999999999999999999763
No 495
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.32 E-value=0.45 Score=47.80 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred eEEEECCCCCcHHHHHHHHhCC
Q 013508 40 SVAVVGGQSSGKSSVLESVVGR 61 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G~ 61 (441)
.|+++|.++|||||+.+.|...
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999753
No 496
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=85.21 E-value=0.48 Score=41.87 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHhC
Q 013508 40 SVAVVGGQSSGKSSVLESVVG 60 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~G 60 (441)
.|+++|.++|||||+...|..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 497
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=85.18 E-value=0.3 Score=45.06 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=32.7
Q ss_pred HHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCCCcEEEEeccCCCCCC
Q 013508 167 ESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTGERTFGVLTKLDLMDK 222 (441)
Q Consensus 167 ~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~~r~i~VltK~D~~~~ 222 (441)
...++..+.+.|.++.++++ ..+..... ..+. +- +++.++|+||+|++++
T Consensus 12 ~~~~~~~l~~~D~vl~VvDa-r~P~~~~~-~~l~--ll--~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDA-RAPFATSA-YGVD--FS--RKETIILLNKVDIADE 61 (262)
T ss_dssp THHHHHHHTTCSEEEEEEET-TSTTTTSC-TTSC--CT--TSEEEEEEECGGGSCH
T ss_pred HHHHHHHHhhCCEEEEEeeC-CCCCcCcC-hHHH--hc--CCCcEEEEECccCCCH
Confidence 35677888999987777654 33332211 1111 11 7899999999999975
No 498
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.08 E-value=2 Score=38.79 Aligned_cols=64 Identities=11% Similarity=0.126 Sum_probs=40.1
Q ss_pred CCCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccccHHHHHHHHHhCCCC---------Cc
Q 013508 139 VVNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIATSDAMKLAREVDPTG---------ER 209 (441)
Q Consensus 139 ~~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~~~~~l~l~~~~~~~~---------~r 209 (441)
..+++|||+|+-.. ......+..+|.+|+++.+.... .....++++.+...+ .+
T Consensus 113 ~yD~viiD~p~~~~---------------~~~~~~l~~ad~vi~v~~~~~~s--~~~~~~~~~~l~~~~~~~~~~~~~~~ 175 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE---------------TGALMALYFADEAIITTNPEVSS--VRDSDRILGILASKSRRAENGEEPIK 175 (260)
T ss_dssp TCSEEEEECCSSSS---------------HHHHHHHHTCSEEEEEECSSHHH--HHHHHHHHHHHTTSSHHHHTTCSCCE
T ss_pred CCCEEEEcCCCCCC---------------HHHHHHHHhCCEEEEEecCChhH--HHHHHHHHHHHHHhccccccccCCcc
Confidence 46899999998532 23344556788888877653322 233444555554433 46
Q ss_pred EEEEeccCCC
Q 013508 210 TFGVLTKLDL 219 (441)
Q Consensus 210 ~i~VltK~D~ 219 (441)
..+|+|++|.
T Consensus 176 ~~~v~N~~~~ 185 (260)
T 3q9l_A 176 EHLLLTRYNP 185 (260)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEecCCc
Confidence 7888999885
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.06 E-value=0.32 Score=51.33 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.9
Q ss_pred eEEEECCCCCcHHHHHHHHh
Q 013508 40 SVAVVGGQSSGKSSVLESVV 59 (441)
Q Consensus 40 ~IvVvG~~ssGKSSllnaL~ 59 (441)
.++|+|+.|||||||++.|+
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 48899999999999998764
No 500
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.95 E-value=1 Score=40.30 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCCcCccCCCCccHHHHHHHHHHHhhcCCCeEEEEeccCccccc-cHHHHHHHHHhCCCCCcEEEEeccCC
Q 013508 140 VNLTLIDLPGLTKVAVEGQPDTIVEDIESMVRSYVEKPNSVILAISPANQDIA-TSDAMKLAREVDPTGERTFGVLTKLD 218 (441)
Q Consensus 140 ~~l~lvDtPGi~~~~~~~~~~~~~~~i~~~v~~yi~~~~~iil~v~~a~~~~~-~~~~l~l~~~~~~~~~r~i~VltK~D 218 (441)
.+++|||+|+.... .....+..+|.+|+++.+...... ....++.++.......+.-+|+|++|
T Consensus 119 yD~viiD~p~~~~~---------------~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~ 183 (245)
T 3ea0_A 119 YDYIIVDFGASIDH---------------VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRAD 183 (245)
T ss_dssp CSEEEEEEESSCCT---------------THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTT
T ss_pred CCEEEEeCCCCCch---------------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCC
Confidence 58999999986531 233456678888888766433221 12233344444333456788999998
Q ss_pred CCC
Q 013508 219 LMD 221 (441)
Q Consensus 219 ~~~ 221 (441)
...
T Consensus 184 ~~~ 186 (245)
T 3ea0_A 184 TNS 186 (245)
T ss_dssp SCT
T ss_pred CCC
Confidence 653
Done!