BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013509
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Pknox1
Length = 73
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423
K + G LP T+V++SW H PYPTE++K ++ +T L L Q+NNWFIN R+R
Sbjct: 8 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 67
Query: 424 SNPSTS 429
S PS+
Sbjct: 68 SGPSSG 73
>pdb|3K2A|A Chain A, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
pdb|3K2A|B Chain B, Crystal Structure Of The Homeobox Domain Of Human Homeobox
Protein Meis2
Length = 67
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
+G P T++ ++W H PYP+EE K +L Q+TGL + Q+NNWFIN R+R
Sbjct: 2 SGIFPKVATNIXRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRR 55
>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
Homeobox Protein Tgif2lx
Length = 83
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
K+R G LP ++ +L+ W H YP+EE+K L ++T L L QI+NWFIN R+R
Sbjct: 8 KKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRR 64
>pdb|2LK2|A Chain A, Solution Nmr Structure Of Homeobox Domain (171-248) Of
Human Homeobox Protein Tgif1, Northeast Structural
Genomics Consortium Target Hr4411b
Length = 89
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
LP ++ +L+ W H YP+E++KA L Q+T L Q+ NWFIN R+R
Sbjct: 12 LPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRR 62
>pdb|1LFU|P Chain P, Nmr Solution Stucture Of The Extended Pbx Homeodomain
Bound To Dna
Length = 82
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
RKRR T +L ++ SH PYP+EE K L +++G+ + Q++NWF N+R R
Sbjct: 4 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKSGITVSQVSNWFGNKRIR 59
>pdb|1PUF|B Chain B, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 73
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
RKRR T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1B72|B Chain B, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 87
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
RKRR T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 58
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
RKRR + +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 3 RKRR--NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIR 58
>pdb|1DU6|A Chain A, Solution Structure Of The Truncated Pbx Homeodomain
Length = 64
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 375 TSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
T +L ++ SH PYP+EE K L ++ G+ + Q++NWF N+R R
Sbjct: 15 TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 17/73 (23%)
Query: 363 RKRRAGKLP-----GDTTS---------VLKSWWQSHSKWPYPTEEDKARLVQETGLQLK 408
R RR LP G+ TS VL+ W+ +H+ PYP+ +K L + TGL
Sbjct: 480 RVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWY-AHN--PYPSPREKRELAEATGLTTT 536
Query: 409 QINNWFINQRKRN 421
Q++NWF N+R+R+
Sbjct: 537 QVSNWFKNRRQRD 549
>pdb|1APL|C Chain C, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1APL|D Chain D, Crystal Structure Of A Mat-Alpha2 Homeodomain-Operator
Complex Suggests A General Model For Homeodomain-Dna
Interactions
pdb|1YRN|B Chain B, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1AKH|B Chain B, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 83
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 59
>pdb|1K61|A Chain A, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|B Chain B, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|C Chain C, Matalpha2 Homeodomain Bound To Dna
pdb|1K61|D Chain D, Matalpha2 Homeodomain Bound To Dna
Length = 60
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 55
>pdb|1MNM|C Chain C, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|D Chain D, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 87
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
R + + +L+SW+ + + PY + L++ T L QI NW N+R++
Sbjct: 30 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRK 84
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 378 LKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
L++ S ++ P P +E+ RL ET + ++I++WF +RK+
Sbjct: 19 LRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 370 LPGDTTSVLKSWWQSHS--KWPYPTEEDKARLVQETGLQLKQINN 412
+P DT + W +H KWP P D AR + + GL K + +
Sbjct: 374 IPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTS 418
>pdb|1USD|A Chain A, Human Vasp Tetramerisation Domain L352m
Length = 45
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 327 PTESERSLMERVRQELKHELK---QGYKEKIVDIREEILRKR 365
P+ S+ S ++RV+QEL E+K Q KE+I++ + LRKR
Sbjct: 1 PSSSDYSDLQRVKQELMEEVKKELQKVKEEIIEAFVQELRKR 42
>pdb|1LE8|B Chain B, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 83
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 420
R + + +L+SW+ + + PY + L++ T L QI NW +R +
Sbjct: 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAK 59
>pdb|2DMP|A Chain A, Solution Structure Of The Third Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 2
Length = 89
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 419
K T +K S K +PT+ + RL ET L ++I++WF +RK
Sbjct: 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK 66
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 350 YKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQ 409
Y EK+ E RKRR + L+ + HSK P+ ++ R+ +E L+ +
Sbjct: 77 YNEKVG--ANERKRKRRT-TISIAAKDALERHFGEHSK---PSSQEIMRMAEELNLEKEV 130
Query: 410 INNWFINQRKR 420
+ WF N+R+R
Sbjct: 131 VRVWFCNRRQR 141
>pdb|3NAR|A Chain A, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
pdb|3NAR|B Chain B, Crystal Structure Of Zhx1 Hd4 (Zinc-Fingers And Homeoboxes
Protein 1, Homeodomain 4)
Length = 96
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 386 SKWPYPTEEDKARLVQETGLQLKQINNWFINQR 418
++WP P E DK L +E+GL I +WF + R
Sbjct: 47 TQWPSPEEYDK--LAKESGLARTDIVSWFGDTR 77
>pdb|2D5V|A Chain A, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
pdb|2D5V|B Chain B, Crystal Structure Of Hnf-6alpha Dna-Binding Domain In
Complex With The Ttr Promoter
Length = 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 391 PTEEDKARLVQETGLQLKQINNWFINQRKRN 421
P++E + + Q+ GL+L ++N+F+N R+R+
Sbjct: 122 PSKELQITISQQLGLELSTVSNFFMNARRRS 152
>pdb|3NAU|A Chain A, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
pdb|3NAU|B Chain B, Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes
Protein 2, Homeodomain 2)
Length = 66
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 390 YPTEEDKARLVQETGLQLKQINNWFINQRKR 420
+P + + RL++ TGL +I WF + R R
Sbjct: 28 FPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 338 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 391
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 137 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 190
Query: 392 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 436
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 191 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 228
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 338 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 391
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 136 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 189
Query: 392 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 436
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 190 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 227
>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2E2M|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form)
pdb|2NVL|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
pdb|2NVL|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Sulfonic Acid Form)
Length = 250
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 19/105 (18%)
Query: 338 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKW------PYP 391
+R L + ++ G ++VD EILR +A KL + + W ++ P P
Sbjct: 137 IRTMLYYPMELG---RLVD---EILRIVKALKLGDSLKRAVPADWPNNEIIGEGLIVPPP 190
Query: 392 TEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKR 436
T ED+AR E+G Q + ++ WF W + S V +++R
Sbjct: 191 TTEDQARARMESG-QYRSLDWWFC------WDTPASRDDVEEARR 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,008,908
Number of Sequences: 62578
Number of extensions: 378725
Number of successful extensions: 1441
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1418
Number of HSP's gapped (non-prelim): 32
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)