Query 013509
Match_columns 441
No_of_seqs 289 out of 1078
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 4.5E-18 1.5E-22 138.4 6.5 62 362-423 6-67 (83)
2 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.8E-22 132.0 7.2 66 363-428 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 2.2E-17 7.5E-22 129.5 6.4 61 367-427 2-62 (67)
4 1du6_A PBX1, homeobox protein 99.7 3.1E-17 1.1E-21 126.2 7.0 62 363-424 3-64 (64)
5 1k61_A Mating-type protein alp 99.7 8.3E-17 2.8E-21 122.4 7.1 59 366-424 1-59 (60)
6 1puf_B PRE-B-cell leukemia tra 99.7 7.9E-17 2.7E-21 127.1 7.0 64 364-427 2-65 (73)
7 2lk2_A Homeobox protein TGIF1; 99.7 3.3E-17 1.1E-21 136.7 4.7 57 367-423 9-65 (89)
8 1le8_B Mating-type protein alp 99.7 1.1E-16 3.8E-21 129.8 7.7 65 363-427 2-66 (83)
9 1b72_B Protein (PBX1); homeodo 99.6 1.3E-16 4.5E-21 129.5 6.6 64 364-427 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 2E-16 6.9E-21 129.0 7.0 62 362-423 26-87 (87)
11 2cra_A Homeobox protein HOX-B1 99.5 8.8E-15 3E-19 114.7 7.5 63 363-428 7-69 (70)
12 2dmu_A Homeobox protein goosec 99.5 7.4E-15 2.5E-19 114.9 6.9 63 363-428 7-69 (70)
13 1akh_A Protein (mating-type pr 99.5 6.3E-15 2.2E-19 112.1 6.1 58 362-422 4-61 (61)
14 2djn_A Homeobox protein DLX-5; 99.5 7.2E-15 2.4E-19 115.2 6.4 64 363-429 7-70 (70)
15 2da3_A Alpha-fetoprotein enhan 99.5 1.2E-14 4E-19 116.0 7.3 63 363-428 17-79 (80)
16 2ecc_A Homeobox and leucine zi 99.5 8.8E-15 3E-19 118.8 6.5 58 365-425 5-62 (76)
17 2e1o_A Homeobox protein PRH; D 99.5 1E-14 3.5E-19 114.3 6.5 63 363-428 7-69 (70)
18 2da2_A Alpha-fetoprotein enhan 99.5 1.5E-14 5.2E-19 113.0 7.2 63 363-428 7-69 (70)
19 2dmt_A Homeobox protein BARH-l 99.5 1.8E-14 6.2E-19 115.7 7.5 63 363-428 17-79 (80)
20 2hdd_A Protein (engrailed home 99.5 1.7E-14 5.8E-19 110.1 6.5 60 362-424 2-61 (61)
21 1bw5_A ISL-1HD, insulin gene e 99.5 2.4E-14 8.1E-19 110.9 7.1 61 363-426 3-63 (66)
22 2da4_A Hypothetical protein DK 99.5 7.2E-15 2.4E-19 117.9 3.8 65 363-427 8-73 (80)
23 2da1_A Alpha-fetoprotein enhan 99.5 2.2E-14 7.4E-19 112.1 6.3 63 363-428 7-69 (70)
24 1ig7_A Homeotic protein MSX-1; 99.5 4.2E-14 1.4E-18 106.6 6.3 57 364-423 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.5 4.9E-14 1.7E-18 108.4 6.3 59 363-424 3-61 (63)
26 1jgg_A Segmentation protein EV 99.5 5.6E-14 1.9E-18 106.9 6.3 57 364-423 2-58 (60)
27 1fjl_A Paired protein; DNA-bin 99.5 2E-14 6.9E-19 115.5 3.7 62 361-425 16-77 (81)
28 2vi6_A Homeobox protein nanog; 99.5 7.4E-14 2.5E-18 106.9 6.6 58 363-423 3-60 (62)
29 2k40_A Homeobox expressed in E 99.5 7E-14 2.4E-18 108.5 6.6 61 364-427 2-62 (67)
30 1ahd_P Antennapedia protein mu 99.5 4.7E-14 1.6E-18 110.3 5.2 62 363-427 2-63 (68)
31 3rkq_A Homeobox protein NKX-2. 99.5 7.9E-14 2.7E-18 104.3 6.1 57 363-422 2-58 (58)
32 1wh5_A ZF-HD homeobox family p 99.4 8.1E-14 2.8E-18 112.9 6.4 63 362-424 16-79 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.4 9.5E-14 3.2E-18 108.4 6.4 62 363-427 2-63 (68)
34 2dmq_A LIM/homeobox protein LH 99.4 8.1E-14 2.8E-18 111.4 6.1 58 363-423 7-64 (80)
35 2l7z_A Homeobox protein HOX-A1 99.4 1.4E-13 4.7E-18 109.0 6.9 61 363-426 7-67 (73)
36 2dms_A Homeobox protein OTX2; 99.4 1.6E-13 5.4E-18 110.1 6.3 60 363-425 7-66 (80)
37 2dn0_A Zinc fingers and homeob 99.4 1.8E-13 6.2E-18 108.9 6.6 60 365-427 10-69 (76)
38 1nk2_P Homeobox protein VND; h 99.4 1.7E-13 5.7E-18 109.4 6.1 58 363-423 9-66 (77)
39 3a02_A Homeobox protein arista 99.4 2E-13 6.9E-18 103.8 6.2 57 366-425 2-58 (60)
40 1zq3_P PRD-4, homeotic bicoid 99.4 1.7E-13 5.6E-18 107.0 5.5 59 363-424 2-60 (68)
41 2cue_A Paired box protein PAX6 99.4 1.6E-13 5.4E-18 110.2 5.4 59 362-423 6-64 (80)
42 2kt0_A Nanog, homeobox protein 99.4 3.1E-13 1.1E-17 108.9 7.1 60 363-425 22-81 (84)
43 1yz8_P Pituitary homeobox 2; D 99.4 6.7E-14 2.3E-18 109.1 3.0 61 363-426 3-63 (68)
44 2m0c_A Homeobox protein arista 99.4 3.7E-13 1.3E-17 105.9 6.9 61 363-426 9-69 (75)
45 1b8i_A Ultrabithorax, protein 99.4 3.3E-13 1.1E-17 108.9 6.6 61 362-425 19-79 (81)
46 1puf_A HOX-1.7, homeobox prote 99.4 3.4E-13 1.1E-17 107.6 6.4 59 363-424 13-71 (77)
47 2hi3_A Homeodomain-only protei 99.4 2.8E-13 9.6E-18 107.1 5.3 59 364-425 3-62 (73)
48 2da5_A Zinc fingers and homeob 99.4 4.7E-13 1.6E-17 106.6 6.4 59 365-426 9-67 (75)
49 2ly9_A Zinc fingers and homeob 99.4 7.9E-13 2.7E-17 104.2 7.6 63 364-429 7-69 (74)
50 3a03_A T-cell leukemia homeobo 99.4 3.9E-13 1.3E-17 101.2 5.4 54 368-424 2-55 (56)
51 1uhs_A HOP, homeodomain only p 99.4 4E-13 1.4E-17 105.7 5.5 59 365-425 3-61 (72)
52 2d5v_A Hepatocyte nuclear fact 99.4 4E-13 1.4E-17 120.7 6.2 65 360-427 94-158 (164)
53 3a01_A Homeodomain-containing 99.4 4.3E-13 1.5E-17 111.1 5.6 60 363-425 17-76 (93)
54 2r5y_A Homeotic protein sex co 99.4 6E-13 2E-17 108.6 6.2 61 362-425 27-87 (88)
55 2cuf_A FLJ21616 protein; homeo 99.4 5.2E-13 1.8E-17 110.6 5.4 60 362-424 6-80 (95)
56 3d1n_I POU domain, class 6, tr 99.3 8.7E-13 3E-17 117.5 6.6 58 363-423 93-150 (151)
57 3nar_A ZHX1, zinc fingers and 99.3 1.6E-12 5.4E-17 108.0 6.9 61 363-426 25-85 (96)
58 2ecb_A Zinc fingers and homeob 99.3 1.8E-12 6.1E-17 107.8 7.1 54 367-423 15-68 (89)
59 2cqx_A LAG1 longevity assuranc 99.3 1.7E-12 5.8E-17 103.2 6.7 62 364-428 9-71 (72)
60 1b72_A Protein (homeobox prote 99.3 1.1E-12 3.7E-17 109.0 5.6 60 362-424 33-92 (97)
61 1wh7_A ZF-HD homeobox family p 99.3 1.1E-12 3.6E-17 106.7 4.5 62 362-424 16-79 (80)
62 3nau_A Zinc fingers and homeob 99.3 1.5E-12 5.1E-17 103.3 5.0 51 370-423 11-61 (66)
63 2dmp_A Zinc fingers and homeob 99.3 3.5E-12 1.2E-16 104.9 7.1 58 366-426 16-73 (89)
64 2e19_A Transcription factor 8; 99.3 4.2E-12 1.4E-16 99.0 6.9 57 366-425 6-62 (64)
65 1e3o_C Octamer-binding transcr 99.3 3.2E-12 1.1E-16 115.1 7.0 60 362-424 100-159 (160)
66 2xsd_C POU domain, class 3, tr 99.3 3.1E-12 1.1E-16 116.1 6.6 65 361-428 97-161 (164)
67 1au7_A Protein PIT-1, GHF-1; c 99.3 5.2E-12 1.8E-16 112.5 7.0 60 362-424 86-145 (146)
68 1x2m_A LAG1 longevity assuranc 99.2 7.9E-12 2.7E-16 98.4 6.5 56 372-429 9-64 (64)
69 1lfb_A Liver transcription fac 99.2 8.2E-12 2.8E-16 105.4 6.0 65 359-426 5-90 (99)
70 2l9r_A Homeobox protein NKX-3. 99.2 1.3E-11 4.5E-16 97.9 6.8 56 369-427 10-65 (69)
71 1wi3_A DNA-binding protein SAT 99.2 2.3E-11 7.8E-16 97.6 7.5 65 362-428 6-70 (71)
72 3l1p_A POU domain, class 5, tr 99.2 9.3E-12 3.2E-16 111.7 4.3 60 362-424 95-154 (155)
73 2da6_A Hepatocyte nuclear fact 99.2 1.7E-11 5.6E-16 104.7 5.5 58 363-423 6-84 (102)
74 1mh3_A Maltose binding-A1 home 99.0 1.4E-10 4.7E-15 113.4 5.2 55 365-422 367-421 (421)
75 2h8r_A Hepatocyte nuclear fact 99.0 3.3E-10 1.1E-14 108.1 6.0 58 362-422 141-219 (221)
76 1ic8_A Hepatocyte nuclear fact 99.0 1.8E-10 6.2E-15 107.7 3.4 59 362-423 114-193 (194)
77 2da7_A Zinc finger homeobox pr 98.9 2.5E-09 8.6E-14 86.0 6.0 48 372-422 14-61 (71)
78 2nzz_A Penetratin conjugated G 96.1 0.00094 3.2E-08 47.5 -0.1 18 408-425 1-18 (37)
79 2ys9_A Homeobox and leucine zi 95.5 0.012 4E-07 47.3 4.1 44 370-416 13-56 (70)
80 1hlv_A CENP-B, major centromer 61.6 16 0.00054 30.0 6.0 51 365-421 3-53 (131)
81 2glo_A Brinker CG9653-PA; prot 55.2 15 0.00051 26.7 4.3 48 366-417 2-49 (59)
82 3hug_A RNA polymerase sigma fa 52.4 8 0.00027 30.3 2.5 47 369-423 37-83 (92)
83 2o8x_A Probable RNA polymerase 52.4 9.6 0.00033 27.6 2.8 50 368-425 14-63 (70)
84 2elh_A CG11849-PA, LD40883P; s 44.6 44 0.0015 26.0 5.8 46 365-418 18-63 (87)
85 1tc3_C Protein (TC3 transposas 44.0 27 0.00091 22.8 3.8 42 368-417 4-45 (51)
86 3mzy_A RNA polymerase sigma-H 41.7 13 0.00046 30.4 2.4 46 369-423 109-154 (164)
87 2jqq_A Conserved oligomeric go 41.5 32 0.0011 32.4 5.1 39 244-284 82-120 (204)
88 2p7v_B Sigma-70, RNA polymeras 41.0 22 0.00074 26.2 3.2 54 369-426 5-58 (68)
89 2rnj_A Response regulator prot 40.7 50 0.0017 25.6 5.5 49 369-426 29-77 (91)
90 3swk_A Vimentin; cytoskeleton, 39.4 95 0.0033 25.1 7.1 48 236-283 20-76 (86)
91 1tty_A Sigma-A, RNA polymerase 39.0 22 0.00076 27.6 3.2 54 369-426 18-71 (87)
92 1ku3_A Sigma factor SIGA; heli 37.9 23 0.00079 26.4 3.0 51 368-422 9-59 (73)
93 3c57_A Two component transcrip 37.9 31 0.001 27.4 3.9 51 368-427 26-76 (95)
94 1fse_A GERE; helix-turn-helix 34.7 41 0.0014 24.4 3.9 50 367-425 9-58 (74)
95 1or7_A Sigma-24, RNA polymeras 33.8 21 0.00072 30.4 2.5 47 370-424 141-187 (194)
96 1rp3_A RNA polymerase sigma fa 33.5 22 0.00076 31.1 2.6 48 368-423 186-233 (239)
97 1je8_A Nitrate/nitrite respons 33.3 26 0.00089 27.1 2.7 48 369-425 21-68 (82)
98 1hlv_A CENP-B, major centromer 32.5 98 0.0033 25.1 6.3 58 363-421 66-130 (131)
99 2q1z_A RPOE, ECF SIGE; ECF sig 31.3 15 0.00051 31.2 1.1 47 369-423 135-181 (184)
100 1s7o_A Hypothetical UPF0122 pr 29.9 35 0.0012 28.4 3.1 47 369-423 22-68 (113)
101 2jpc_A SSRB; DNA binding prote 29.8 42 0.0014 23.7 3.2 29 397-425 17-45 (61)
102 1x3u_A Transcriptional regulat 28.4 45 0.0015 24.7 3.2 47 370-425 17-63 (79)
103 3bd1_A CRO protein; transcript 28.3 32 0.0011 25.7 2.4 23 396-418 14-36 (79)
104 1p4w_A RCSB; solution structur 27.5 92 0.0031 25.2 5.2 50 367-425 32-81 (99)
105 3lsg_A Two-component response 27.2 90 0.0031 24.3 5.0 41 374-417 3-43 (103)
106 2k27_A Paired box protein PAX- 27.0 1.7E+02 0.0058 24.6 7.1 61 367-430 81-148 (159)
107 2xi8_A Putative transcription 26.7 30 0.001 24.2 1.9 22 396-417 17-38 (66)
108 2r1j_L Repressor protein C2; p 26.6 30 0.001 24.3 1.9 23 396-418 21-43 (68)
109 1sse_B AP-1 like transcription 26.4 54 0.0018 27.1 3.5 29 156-187 20-48 (86)
110 1zug_A Phage 434 CRO protein; 25.9 31 0.0011 24.5 1.9 23 396-418 19-41 (71)
111 1iuf_A Centromere ABP1 protein 25.9 80 0.0027 26.9 4.8 50 364-419 6-62 (144)
112 4a8j_C Elongator complex prote 25.5 26 0.00088 34.6 1.7 18 42-59 43-60 (280)
113 1xsv_A Hypothetical UPF0122 pr 24.7 38 0.0013 28.0 2.4 47 369-423 25-71 (113)
114 1jko_C HIN recombinase, DNA-in 24.5 1.1E+02 0.0039 20.0 4.5 41 368-416 4-44 (52)
115 3ol1_A Vimentin; structural ge 24.1 2.2E+02 0.0075 24.0 7.1 47 237-283 41-96 (119)
116 1xc0_A Pardaxin P-4, PA4; BEND 24.0 39 0.0013 22.9 1.8 22 176-197 5-26 (33)
117 3bs3_A Putative DNA-binding pr 23.6 38 0.0013 24.5 2.0 23 396-418 26-48 (76)
118 1adr_A P22 C2 repressor; trans 23.6 37 0.0013 24.5 1.9 22 396-417 21-42 (76)
119 2rn7_A IS629 ORFA; helix, all 23.5 1.2E+02 0.0043 23.8 5.2 52 367-419 4-56 (108)
120 2b5a_A C.BCLI; helix-turn-heli 22.5 40 0.0014 24.4 1.9 23 396-418 26-48 (77)
121 1r69_A Repressor protein CI; g 22.3 41 0.0014 23.8 1.9 23 396-418 17-39 (69)
122 2wiu_B HTH-type transcriptiona 22.2 54 0.0018 24.4 2.7 23 396-418 28-50 (88)
123 2jn6_A Protein CGL2762, transp 21.6 67 0.0023 25.0 3.2 46 368-419 4-49 (97)
124 3b7h_A Prophage LP1 protein 11 20.7 46 0.0016 24.2 1.9 23 396-418 23-45 (78)
125 3clo_A Transcriptional regulat 20.6 73 0.0025 29.3 3.7 50 368-426 196-245 (258)
126 1y7y_A C.AHDI; helix-turn-heli 20.4 48 0.0016 23.7 1.9 22 396-417 29-50 (74)
127 3omt_A Uncharacterized protein 20.0 48 0.0016 24.1 1.9 22 396-417 24-45 (73)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=138.36 Aligned_cols=62 Identities=42% Similarity=0.768 Sum_probs=59.0
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.++|+|+.|+++++.+|+.||.+|..+|||+.++|..||..|||+..||.+||+|+|+|.|+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcH
Confidence 45678889999999999999999999999999999999999999999999999999999986
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=131.98 Aligned_cols=66 Identities=45% Similarity=0.842 Sum_probs=61.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|+.|++.++.+|+.||.+|..+|||+.++|..||..+||+..||.+||+|+|+|.|++....
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 467788999999999999999999999999999999999999999999999999999999876653
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.2e-17 Score=129.53 Aligned_cols=61 Identities=41% Similarity=0.796 Sum_probs=53.8
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
.++||++++.+|+.||.+|..+|||+..+|..||..|||+..||.+||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999986543
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.1e-17 Score=126.21 Aligned_cols=62 Identities=31% Similarity=0.583 Sum_probs=58.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+++|+.|+++++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.||.
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 46778899999999999999999999999999999999999999999999999999999873
No 5
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=8.3e-17 Score=122.39 Aligned_cols=59 Identities=25% Similarity=0.529 Sum_probs=56.4
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 366 kR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
|+++|+++++.+|+.||..|..+|||+.+++..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46889999999999999999999999999999999999999999999999999999874
No 6
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=7.9e-17 Score=127.09 Aligned_cols=64 Identities=31% Similarity=0.599 Sum_probs=60.3
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
+|+|+.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6788999999999999999999999999999999999999999999999999999999886654
No 7
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=136.69 Aligned_cols=57 Identities=39% Similarity=0.687 Sum_probs=54.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
..-||++++.+|++||.+|..+|||++++|.+||.+|||+.+||+|||+|+|+|.|+
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 356999999999999999999999999999999999999999999999999999986
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=1.1e-16 Score=129.80 Aligned_cols=65 Identities=22% Similarity=0.445 Sum_probs=58.3
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
+.+++.+|+.+++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34555669999999999999999999999999999999999999999999999999999986654
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.3e-16 Score=129.52 Aligned_cols=64 Identities=31% Similarity=0.599 Sum_probs=59.3
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
+|+|+.|++.++.+|+.||..|..+|||+.++|..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6788999999999999999999999999999999999999999999999999999999885543
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=2e-16 Score=128.99 Aligned_cols=62 Identities=24% Similarity=0.508 Sum_probs=58.0
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.++|+|+.|+++++.+|+.||..|..+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 35667789999999999999999999999999999999999999999999999999999863
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=8.8e-15 Score=114.68 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=59.1
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 4677889999999999999998 88999999999999999999999999999999999988765
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=114.95 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=59.1
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 5677889999999999999998 89999999999999999999999999999999999987765
No 13
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.54 E-value=6.3e-15 Score=112.13 Aligned_cols=58 Identities=17% Similarity=0.346 Sum_probs=47.8
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~K 422 (441)
..+|+|+.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45667789999999999999998 79999999999999999999999999999999865
No 14
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=7.2e-15 Score=115.19 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=59.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~s 429 (441)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ssg 70 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSSG 70 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCCC
Confidence 4677889999999999999987 889999999999999999999999999999999999887753
No 15
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=115.95 Aligned_cols=63 Identities=25% Similarity=0.403 Sum_probs=58.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 4677889999999999999998 78999999999999999999999999999999999987764
No 16
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=8.8e-15 Score=118.81 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=54.4
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.++++|+++++.+|+.||.. +|||+.++|.+||..|||+..||.+||+|+|+|.|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 56788999999999999998 89999999999999999999999999999999998754
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1e-14 Score=114.31 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=58.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4677889999999999999998 88999999999999999999999999999999999887765
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=112.97 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=58.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4677889999999999999998 88999999999999999999999999999999999877664
No 19
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=115.72 Aligned_cols=63 Identities=22% Similarity=0.359 Sum_probs=59.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4567789999999999999998 88999999999999999999999999999999999988765
No 20
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.51 E-value=1.7e-14 Score=110.12 Aligned_cols=60 Identities=30% Similarity=0.401 Sum_probs=52.9
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 45778899999999999999998 8899999999999999999999999999999998874
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=2.4e-14 Score=110.88 Aligned_cols=61 Identities=26% Similarity=0.381 Sum_probs=57.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
++|+|..|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 5678889999999999999998 899999999999999999999999999999999988653
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7.2e-15 Score=117.92 Aligned_cols=65 Identities=12% Similarity=0.258 Sum_probs=57.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhc-CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H-~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
++|+|+.|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|+|.++....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 46777899999999999999985 444999999999999999999999999999999999875443
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=112.11 Aligned_cols=63 Identities=29% Similarity=0.510 Sum_probs=58.3
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....+
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPSS 69 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcccC
Confidence 4677889999999999999998 88999999999999999999999999999999999876653
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.48 E-value=4.2e-14 Score=106.57 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=53.9
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999998 889999999999999999999999999999999875
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.47 E-value=4.9e-14 Score=108.36 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=54.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 5678899999999999999998 8899999999999999999999999999999998864
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.47 E-value=5.6e-14 Score=106.88 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=53.6
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 467889999999999999998 889999999999999999999999999999999876
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.46 E-value=2e-14 Score=115.54 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=56.5
Q ss_pred HhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 361 ILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 361 ~~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
..++|+|..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 345677889999999999999998 89999999999999999999999999999999998743
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.46 E-value=7.4e-14 Score=106.87 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=51.5
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
++|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4677889999999999999998 889999999999999999999999999999999986
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.46 E-value=7e-14 Score=108.51 Aligned_cols=61 Identities=25% Similarity=0.377 Sum_probs=56.6
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 577889999999999999977 8999999999999999999999999999999999886543
No 30
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.45 E-value=4.7e-14 Score=110.29 Aligned_cols=62 Identities=24% Similarity=0.297 Sum_probs=57.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5788899999999999999998 8899999999999999999999999999999999875543
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.45 E-value=7.9e-14 Score=104.33 Aligned_cols=57 Identities=18% Similarity=0.305 Sum_probs=53.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~K 422 (441)
++|.|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4677889999999999999986 89999999999999999999999999999999865
No 32
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.45 E-value=8.1e-14 Score=112.91 Aligned_cols=63 Identities=21% Similarity=0.304 Sum_probs=57.6
Q ss_pred hhccCCCCCCcchHHHHHHHHHh-cCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQS-HSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~-H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+||+|+.|+.+++..|+.+|.. ++.+|||+..++.+||..+||++.||.+||+|+|.|.+++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 35677889999999999999996 6779999999999999999999999999999999998863
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.45 E-value=9.5e-14 Score=108.38 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=57.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 5678889999999999999998 8899999999999999999999999999999999876543
No 34
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.1e-14 Score=111.43 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=55.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.+|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 5678889999999999999998 889999999999999999999999999999999986
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.44 E-value=1.4e-13 Score=108.98 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=56.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4677889999999999999998 899999999999999999999999999999999988644
No 36
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=1.6e-13 Score=110.10 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=55.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 4677889999999999999998 88999999999999999999999999999999998744
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=108.92 Aligned_cols=60 Identities=22% Similarity=0.356 Sum_probs=55.6
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
+.|+.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 45788999999999999998 8899999999999999999999999999999999886554
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.42 E-value=1.7e-13 Score=109.39 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=54.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 4566788999999999999998 889999999999999999999999999999999886
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.42 E-value=2e-13 Score=103.82 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=49.8
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 366 kR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 3578999999999999988 88999999999999999999999999999999998753
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=1.7e-13 Score=107.01 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=55.2
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4678889999999999999987 8899999999999999999999999999999999863
No 41
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=1.6e-13 Score=110.24 Aligned_cols=59 Identities=20% Similarity=0.339 Sum_probs=55.3
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence 35677889999999999999987 899999999999999999999999999999999986
No 42
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.41 E-value=3.1e-13 Score=108.92 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=55.9
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999999999998 88999999999999999999999999999999998754
No 43
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.41 E-value=6.7e-14 Score=109.07 Aligned_cols=61 Identities=18% Similarity=0.339 Sum_probs=56.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677889999999999999987 899999999999999999999999999999999987543
No 44
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.40 E-value=3.7e-13 Score=105.87 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=56.4
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
++|.|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4566788999999999999998 889999999999999999999999999999999988654
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.40 E-value=3.3e-13 Score=108.91 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=53.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 35677889999999999999998 88999999999999999999999999999999998854
No 46
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.39 E-value=3.4e-13 Score=107.61 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=55.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+|+|..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999998 8899999999999999999999999999999998863
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=2.8e-13 Score=107.05 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred ccCCCCCCcchHHHHHHHHH-hcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 364 KRRAGKLPGDTTSVLKSWWQ-SHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~-~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.++|..|+.++..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999999998 5 78999999999999999999999999999999998744
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.7e-13 Score=106.57 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=54.6
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
+|+.+|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45677999999999999998 889999999999999999999999999999999987554
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.38 E-value=7.9e-13 Score=104.25 Aligned_cols=63 Identities=22% Similarity=0.352 Sum_probs=57.8
Q ss_pred ccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013509 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~s 429 (441)
++.|..|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 567789999999999999998 889999999999999999999999999999999998665543
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.38 E-value=3.9e-13 Score=101.25 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=49.6
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
+.|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 46899999999999998 8899999999999999999999999999999998863
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=4e-13 Score=105.74 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=53.6
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
++|+.|+.++..+|+.+|.. .+|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56789999999999999972 178999999999999999999999999999999998744
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.37 E-value=4e-13 Score=120.69 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=54.2
Q ss_pred HHhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 360 e~~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
....+|+|+.|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 3456778899999999999999999 7899999999999999999999999999999999986544
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.37 E-value=4.3e-13 Score=111.11 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=55.8
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
++|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 4677889999999999999998 88999999999999999999999999999999998743
No 54
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.36 E-value=6e-13 Score=108.63 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=54.0
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
..+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 45677889999999999999987 88999999999999999999999999999999998753
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=5.2e-13 Score=110.57 Aligned_cols=60 Identities=18% Similarity=0.364 Sum_probs=55.6
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TG---------------Ls~kQV~NWF~NrRrR~KK~ 424 (441)
.++|.|..|+..++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+.
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 34677789999999999999999 89999999999999999 99999999999999999863
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.34 E-value=8.7e-13 Score=117.53 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=54.6
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
++|+|..|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4566778999999999999998 899999999999999999999999999999999886
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=107.97 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=55.5
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3467789999999999999998 889999999999999999999999999999999998653
No 58
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.8e-12 Score=107.81 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=50.6
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
...|+.+++.+|+.+|.. +|||+..+|.+||..+||+..||.+||+|+|+|.++
T Consensus 15 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred hccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 348999999999999998 889999999999999999999999999999988866
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.7e-12 Score=103.22 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=56.0
Q ss_pred ccCCCCCCcchHHHHHHHH-HhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 364 KRRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf-~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+++..++.++..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.|.|+...++
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 3556678889999999999 76 88999999999999999999999999999999999887664
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=1.1e-12 Score=109.00 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=53.3
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
..+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45677889999999999999987 8899999999999999999999999999999998764
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.31 E-value=1.1e-12 Score=106.71 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=55.1
Q ss_pred hhccCCCCCCcchHHHHHHHHHhc--CCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSH--SKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H--~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.+||+|+.|+.+++..|+ -|..+ +.+|||+..++.+||..+||++.||.+||+|+|.+.+++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 356778899999999999 57774 448999999999999999999999999999999998864
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.30 E-value=1.5e-12 Score=103.35 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=48.3
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 370 lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
-+++++..|+..|.. +|||+..++.+||..|||+..||.+||+|+|.|.|+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 467899999999999 889999999999999999999999999999999875
No 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.5e-12 Score=104.94 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=52.6
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 366 kR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
++.+|+.+++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|+|.++...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3445999999999999998 889999999999999999999999999999999976544
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=4.2e-12 Score=98.99 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=51.8
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 366 kR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.+..+.++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++-.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 3466788999999999976 88999999999999999999999999999999988743
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.29 E-value=3.2e-12 Score=115.10 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=54.0
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 45677889999999999999998 8899999999999999999999999999999999875
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.28 E-value=3.1e-12 Score=116.11 Aligned_cols=65 Identities=17% Similarity=0.377 Sum_probs=52.3
Q ss_pred HhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 361 ILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 361 ~~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
..++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 161 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161 (164)
T ss_dssp ---------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC--
T ss_pred ccCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCCC
Confidence 345677889999999999999998 88999999999999999999999999999999999877653
No 67
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.26 E-value=5.2e-12 Score=112.49 Aligned_cols=60 Identities=18% Similarity=0.412 Sum_probs=54.3
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667889999999999999998 8999999999999999999999999999999999874
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.25 E-value=7.9e-12 Score=98.41 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCCC
Q 013509 372 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTS 429 (441)
Q Consensus 372 kea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~s 429 (441)
..+..+|+..|.. .++||+..++..||.++||++.||.+||+|+|.+.|+..|+++
T Consensus 9 ~~~~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~~ 64 (64)
T 1x2m_A 9 AQPNAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSSG 64 (64)
T ss_dssp SCHHHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred chHHHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 4568999999943 2679999999999999999999999999999999999888764
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.23 E-value=8.2e-12 Score=105.42 Aligned_cols=65 Identities=23% Similarity=0.366 Sum_probs=52.7
Q ss_pred HHHhhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhH
Q 013509 359 EEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQ 417 (441)
Q Consensus 359 ee~~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~------------------TG---Ls~kQV~NWF~Nr 417 (441)
...+++|.|..|+..++.+|+.+|.. +|||+..+|.+||.. +| |+..||.+||+|+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNR 81 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 81 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHH
Confidence 34456677889999999999999988 889999999999999 88 9999999999999
Q ss_pred HhhcccCCC
Q 013509 418 RKRNWHSNP 426 (441)
Q Consensus 418 RrR~KK~n~ 426 (441)
|++.++...
T Consensus 82 R~k~k~k~~ 90 (99)
T 1lfb_A 82 RKEEAFRHK 90 (99)
T ss_dssp HHTTSCCC-
T ss_pred HHHHHHhch
Confidence 999876543
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.23 E-value=1.3e-11 Score=97.93 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=51.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
.++..+...|+.+|.. +|||+..+|..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 4677899999999998 8899999999999999999999999999999999886544
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.21 E-value=2.3e-11 Score=97.58 Aligned_cols=65 Identities=28% Similarity=0.347 Sum_probs=59.4
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCCC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPST 428 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s~ 428 (441)
.+||.|+.|+.++..+|+..|.. .+|||+.+++..||.+|||++.+|..||+|+|--.++..+++
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 46788899999999999999987 356999999999999999999999999999999999887765
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.18 E-value=9.3e-12 Score=111.73 Aligned_cols=60 Identities=22% Similarity=0.424 Sum_probs=55.0
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
.++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 35667789999999999999976 8999999999999999999999999999999999874
No 73
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=104.66 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=54.0
Q ss_pred hccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhHHhhc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 421 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~T---------------------GLs~kQV~NWF~NrRrR~ 421 (441)
++|.|..|++.++.+|+.+|.. +|||+..+|++||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 5667789999999999999998 8899999999999999 799999999999999998
Q ss_pred cc
Q 013509 422 WH 423 (441)
Q Consensus 422 KK 423 (441)
++
T Consensus 83 kr 84 (102)
T 2da6_A 83 AF 84 (102)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.03 E-value=1.4e-10 Score=113.36 Aligned_cols=55 Identities=20% Similarity=0.379 Sum_probs=50.7
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~K 422 (441)
+.+..|...++..|+.+|.. +|||+..+|.+||.+|||++.||++||+|+|+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34467899999999999988 88999999999999999999999999999999976
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.99 E-value=3.3e-10 Score=108.10 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=52.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHhh
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKR 420 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TG---------------------Ls~kQV~NWF~NrRrR 420 (441)
+++|.|..|++.++.+|+.||.. +|||+..+|++||..|| |+..||.+||+|+|++
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 35667788999999999999998 89999999999999998 8999999999999997
Q ss_pred cc
Q 013509 421 NW 422 (441)
Q Consensus 421 ~K 422 (441)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 63
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.97 E-value=1.8e-10 Score=107.69 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=52.7
Q ss_pred hhccCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhHHhh
Q 013509 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKR 420 (441)
Q Consensus 362 ~kkRkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TG---------------------Ls~kQV~NWF~NrRrR 420 (441)
+++|.|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 34677889999999999999998 88999999999999999 9999999999999999
Q ss_pred ccc
Q 013509 421 NWH 423 (441)
Q Consensus 421 ~KK 423 (441)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 874
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=2.5e-09 Score=85.98 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013509 372 GDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (441)
Q Consensus 372 kea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~K 422 (441)
++++.+|+..|.. +|||+.+++..||..+||+...|+.||+|+|.+..
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 6789999999999 89999999999999999999999999999998543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.08 E-value=0.00094 Score=47.46 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.6
Q ss_pred hhhhhhhhhHHhhcccCC
Q 013509 408 KQINNWFINQRKRNWHSN 425 (441)
Q Consensus 408 kQV~NWF~NrRrR~KK~n 425 (441)
.||.+||+|+|.|.||..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999998743
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.50 E-value=0.012 Score=47.27 Aligned_cols=44 Identities=27% Similarity=0.522 Sum_probs=40.3
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013509 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (441)
Q Consensus 370 lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~N 416 (441)
.++..+++|+++|..|. ...+++...|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~hk---~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQ---QLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTC---CCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhc---ccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 46677899999999987 899999999999999999999999964
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=61.55 E-value=16 Score=29.96 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=39.2
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhc
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 421 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~ 421 (441)
++|..|+.+.+..+-.++.. .+.++. .++|+.+|++...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhhc
Confidence 35678999998877777765 445552 3689999999999999998876643
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=55.25 E-value=15 Score=26.68 Aligned_cols=48 Identities=6% Similarity=0.155 Sum_probs=32.3
Q ss_pred CCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 013509 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 366 kR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~Nr 417 (441)
++++|+.+.+..+...+.. . ++......++|+.+|++..+|.+|....
T Consensus 2 ~r~~ys~efK~~~~~~~~~-g---~s~~~~~~~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN-D---NDCKGNQRATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C---TTTTTCHHHHHHHTTSCHHHHHHHHTTH
T ss_pred CCCcCCHHHHHHHHHHHHc-C---CCcchHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3567888877666554443 1 1211235689999999999999996543
No 82
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.38 E-value=8 Score=30.35 Aligned_cols=47 Identities=9% Similarity=0.147 Sum_probs=38.0
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.||...+.+|.-.|.+.+ .-.++|+.+|++...|..+....|+++++
T Consensus 37 ~L~~~~r~vl~l~~~~g~--------s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--------STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488888899877555422 24589999999999999999999999875
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=52.36 E-value=9.6 Score=27.62 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=38.6
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
..||+..+.+|...|.... .-.++|..+|++...|..+....|++.++..
T Consensus 14 ~~L~~~~r~il~l~~~~g~--------s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLLGL--------SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTSCC--------CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4588889999877654422 1358999999999999999999999987643
No 84
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=44.57 E-value=44 Score=26.01 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=31.9
Q ss_pred cCCCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHH
Q 013509 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 365 RkR~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrR 418 (441)
+++.+|+.+.+......+.. . + -..++|+.+|++...|..|....+
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g---~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-G---E----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-T---C----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-C---C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34567888876555455533 2 1 255889999999999999986544
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=43.98 E-value=27 Score=22.76 Aligned_cols=42 Identities=7% Similarity=0.031 Sum_probs=28.8
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~Nr 417 (441)
..++.+.+..+...+... + ...++|+.+|++..-|..|+...
T Consensus 4 ~~l~~~~~~~i~~~~~~g----~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN----V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT----C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 467777664444444431 2 25589999999999999998543
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=41.70 E-value=13 Score=30.40 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.||+..+.+|. .|... | .-.++|+.+|++...|.++....|++.++
T Consensus 109 ~L~~~~r~v~~-~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG----Y----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTTT----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC----C----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 37888888988 33331 2 23579999999999999999999999875
No 87
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=41.45 E-value=32 Score=32.42 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHhhC
Q 013509 244 THYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 284 (441)
Q Consensus 244 eaYC~mL~kYkEEL~kP~~~~~~EA~~fc~~IEsQL~sL~~ 284 (441)
..|-.-|-....-|..+.+ ..|.+.+++++-..|.++|+
T Consensus 82 l~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 3477777788888888764 67999999999999999997
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.96 E-value=22 Score=26.20 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=39.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
.||+..+.+|...|.-.....+ .-.++|+.+|++...|..+....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888776511000112 22579999999999999999999999987543
No 89
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.67 E-value=50 Score=25.63 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=38.2
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
.||...+.+|.-+ .+. |.. .++|+.+|++..-|.++....|++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~g----~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AKG----YSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HTT----CCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-HcC----CCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4888888898764 332 222 379999999999999999999999987554
No 90
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=39.44 E-value=95 Score=25.06 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHHhh
Q 013509 236 DKELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (441)
Q Consensus 236 DPELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~fc~~IEsQL~sL~ 283 (441)
.-|+|..-.+--+...||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777788888887652 23456788888889999999886
No 91
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.04 E-value=22 Score=27.64 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
.||+..+.+|...|.-.....+ .-.++|..+|++...|..+....+++.++...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~ 71 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSR 71 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBS
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4888888998776641000111 23578999999999999999999999987543
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.90 E-value=23 Score=26.41 Aligned_cols=51 Identities=16% Similarity=-0.018 Sum_probs=38.0
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcc
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 422 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~K 422 (441)
..||+..+.+|...|.-.....+ + -.++|..+|++...|..|....+++.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~-s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH-T---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35888899998776641000112 1 248999999999999999999999998
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.87 E-value=31 Score=27.39 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=39.7
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCCC
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPS 427 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~s 427 (441)
..|+...+.+|.-.+.. | .-.++|+.+|++..-|.++....|++.+..+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG-----L----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp -CCCHHHHHHHHHHHTT-----C----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred hcCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 35888888888775322 2 126899999999999999999999999876543
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.69 E-value=41 Score=24.41 Aligned_cols=50 Identities=12% Similarity=0.044 Sum_probs=38.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
...|++..+.+|..+ .+ . + .-.++|+.+|++..-|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~-~~-g---~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ-D---K----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT-T---C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-Hc-C---C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 356888888888764 22 1 3 2357999999999999999999998887644
No 95
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.83 E-value=21 Score=30.42 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccC
Q 013509 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHS 424 (441)
Q Consensus 370 lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~ 424 (441)
||...+.+|.-.|.... + -.++|+.+|++...|.++....|++.++.
T Consensus 141 L~~~~r~vl~l~~~~g~----s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL----S----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTCC----C----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC----C----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 78888888876554422 2 24799999999999999999999998763
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.45 E-value=22 Score=31.10 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.9
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
..||+..+.+|.-.|... | .-.++|+.+|++...|..+....|++.++
T Consensus 186 ~~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEE----L----PAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TTSCHHHHHHHHHHHTSC----C----CHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcC----C----CHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 358999999998776542 2 23479999999999999999999999875
No 97
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.33 E-value=26 Score=27.05 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.|+...+.+|.-++.. + .-.++|+.+|++...|.++..+.|++.+..+
T Consensus 21 ~Lt~~e~~vl~l~~~g-----~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLIAQG-----L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHHTTT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4777888888764221 2 3458999999999999999999999987654
No 98
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=32.47 E-value=98 Score=25.07 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=39.7
Q ss_pred hccCCCCCCcchHHHHHHHHHhcC--CCCCCCHHHHH----HHHHHhCCChhhh-hhhhhhHHhhc
Q 013509 363 RKRRAGKLPGDTTSVLKSWWQSHS--KWPYPTEEDKA----RLVQETGLQLKQI-NNWFINQRKRN 421 (441)
Q Consensus 363 kkRkR~~lpkea~~iLk~Wf~~H~--~nPYPSeeEK~----~LA~~TGLs~kQV-~NWF~NrRrR~ 421 (441)
+++.+..+..+.-..|..|+.+.. .-| ||...-. .|+...|++.-.+ ..|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 444556677788999999998643 456 7876654 4556667754333 47998888776
No 99
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=31.25 E-value=15 Score=31.17 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.||...+.+|.-.|.... +| .++|+.+|++...|.++....|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g~--s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDL--TH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSCC--SS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC--CH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388889999977665533 33 269999999999999999999999875
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.86 E-value=35 Score=28.39 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=38.1
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.||+..+.++.-.|.... .-.++|+.+|++...|..|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--------SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--------CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488889899877655422 13589999999999999999999998875
No 101
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.79 E-value=42 Score=23.67 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 397 ARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 397 ~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
.++|+.+|++..-|.++..+.+++.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 48999999999999999999999987644
No 102
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.40 E-value=45 Score=24.67 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=35.7
Q ss_pred CCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 370 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 370 lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
||+..+.+|.-++.. +. -.++|..+|++...|..++...+++.+..+
T Consensus 17 L~~~e~~vl~l~~~g-----~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVVAG-----LP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHTTT-----CC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHcC-----CC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 566677777664222 22 248999999999999999999999998754
No 103
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=28.26 E-value=32 Score=25.74 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|+.|..+.|
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 104
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.47 E-value=92 Score=25.24 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=39.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCC
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSN 425 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n 425 (441)
...|++..+.+|.-++.- . . -.++|+.+|++..-|.++..+.+++..-.+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G-~--s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEG-F--L------VTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHHHHT-C--C------HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHHHcC-C--C------HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 467999999999665432 2 1 268999999999999999999999886543
No 105
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=27.22 E-value=90 Score=24.31 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhH
Q 013509 374 TTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 374 a~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~Nr 417 (441)
....+..|..+|...|-++.+ .||+.+|++...+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 456677888888766555544 58888888888888777543
No 106
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.98 E-value=1.7e+02 Score=24.55 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=38.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhHHhhcccCCCCCCh
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHSNPSTST 430 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~-LA~~T------GLs~kQV~NWF~NrRrR~KK~n~s~st 430 (441)
+.+++.+....|..++.+ +|--+..+... |.+.. .++...|..|+...+..-.+..-+.|+
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~ 148 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGA 148 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCC
Confidence 456777778888888876 44445444332 33221 489999999998777665554444333
No 107
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=26.74 E-value=30 Score=24.16 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 013509 396 KARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~Nr 417 (441)
..+||+.+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999764
No 108
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.65 E-value=30 Score=24.29 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 45799999999999999987643
No 109
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=26.37 E-value=54 Score=27.14 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCCcccccCCCCcchhhhHHHHHHHhhCCChH
Q 013509 156 SEGVVVESGADGVVNWQNARYKAEILSHPLYE 187 (441)
Q Consensus 156 ~~~~~~~~~~~~~~~~e~e~lKAkI~sHPlYp 187 (441)
.+.||. +..+.++.. ..+=.+|.+||+|.
T Consensus 20 ~~~vvp-s~~g~lL~c--~~iWd~I~shP~~~ 48 (86)
T 1sse_B 20 DNDVVP-SKEGSLLRC--SEIWDRITTHPKYS 48 (86)
T ss_dssp CCCSSC-CSSCCEECH--HHHHHHHHTCSCCS
T ss_pred cCeeee-CCCcceecH--HHHHHHHhcCcchh
Confidence 334554 444345544 45668999999998
No 110
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=25.93 E-value=31 Score=24.55 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999998754
No 111
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.88 E-value=80 Score=26.90 Aligned_cols=50 Identities=8% Similarity=0.191 Sum_probs=38.4
Q ss_pred ccCCCCCCcchHHHHHHHH-HhcCCCCCCCHHHHHHHHH----Hh--CCChhhhhhhhhhHHh
Q 013509 364 KRRAGKLPGDTTSVLKSWW-QSHSKWPYPTEEDKARLVQ----ET--GLQLKQINNWFINQRK 419 (441)
Q Consensus 364 kRkR~~lpkea~~iLk~Wf-~~H~~nPYPSeeEK~~LA~----~T--GLs~kQV~NWF~NrRr 419 (441)
+++|..|+-+++..|..|+ .. +|-.+.. +||. +. |++...|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5778899999999999988 45 5555543 4555 77 7899999999987554
No 112
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=25.48 E-value=26 Score=34.56 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=14.6
Q ss_pred cccCCCCchhhHHHHHhh
Q 013509 42 SIETTAPNWLNSALLRSQ 59 (441)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (441)
...++.|+||.++++-..
T Consensus 43 ~~~gTsp~WLin~lves~ 60 (280)
T 4a8j_C 43 HQSCTQPLWMINALVETH 60 (280)
T ss_dssp ECTTSCCHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHH
Confidence 346778999999999864
No 113
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.65 E-value=38 Score=27.99 Aligned_cols=47 Identities=4% Similarity=0.029 Sum_probs=37.9
Q ss_pred CCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhccc
Q 013509 369 KLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 423 (441)
Q Consensus 369 ~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK 423 (441)
.||+..+.+|.-.|.... .-.++|+.+|++..-|..++...|++.++
T Consensus 25 ~L~~~~r~vl~l~~~~g~--------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--------SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--------CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--------CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 388888899877655422 23589999999999999999999999875
No 114
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=24.49 E-value=1.1e+02 Score=19.98 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=28.2
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFIN 416 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~N 416 (441)
..++.+....+...+... + ...+||+.+|++..-|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~~~g----~----s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKG----H----PRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHTT----C----CHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCCCHHHHHHHHHH
Confidence 456666655555555431 1 2468999999999999999854
No 115
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.05 E-value=2.2e+02 Score=24.02 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH---------HhhhHHHHHHHHHHHHHHHHHhh
Q 013509 237 KELDQFMTHYVLLLCSFKEQLQQH---------VRVHAMEAVMACWEIEQSLQSLT 283 (441)
Q Consensus 237 PELDQFMeaYC~mL~kYkEEL~kP---------~~~~~~EA~~fc~~IEsQL~sL~ 283 (441)
-|+|..-.+.-+...||.+|+..- +++..+++++.--.+|.++.+|.
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 344544444445555666665442 23445677766667888888887
No 116
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=23.98 E-value=39 Score=22.93 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=17.4
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 013509 176 YKAEILSHPLYEQLLSAHVACL 197 (441)
Q Consensus 176 lKAkI~sHPlYp~LL~AyidCl 197 (441)
+-.+|++-|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999999865443
No 117
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.61 E-value=38 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999997653
No 118
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.60 E-value=37 Score=24.47 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 013509 396 KARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~Nr 417 (441)
..+||+.+|++...|..|..++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~ 42 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSE 42 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999998764
No 119
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=23.48 E-value=1.2e+02 Score=23.82 Aligned_cols=52 Identities=6% Similarity=0.155 Sum_probs=33.0
Q ss_pred CCCCCcchHHHHHHHHHhcCCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhHHh
Q 013509 367 AGKLPGDTTSVLKSWWQSHSKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 419 (441)
Q Consensus 367 R~~lpkea~~iLk~Wf~~H~~nPYPSe-eEK~~LA~~TGLs~kQV~NWF~NrRr 419 (441)
+.+|+.+.+...-..+..+. .=|++. .....+|..+|++...|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45688887654444433211 003333 35678999999999999999765443
No 120
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.49 E-value=40 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 35799999999999999997643
No 121
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=22.30 E-value=41 Score=23.75 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45799999999999999987644
No 122
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=22.18 E-value=54 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998743
No 123
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.59 E-value=67 Score=25.00 Aligned_cols=46 Identities=9% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHh
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 419 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRr 419 (441)
++|+.+.+...-..+.... ..-...+|+.+|++...|..|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~~------g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD------GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG------GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHcC------CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 5688777655544443210 112568999999999999999865443
No 124
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=20.75 E-value=46 Score=24.16 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhHH
Q 013509 396 KARLVQETGLQLKQINNWFINQR 418 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~NrR 418 (441)
..+||+.+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 125
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.57 E-value=73 Score=29.28 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=40.5
Q ss_pred CCCCcchHHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCChhhhhhhhhhHHhhcccCCC
Q 013509 368 GKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNP 426 (441)
Q Consensus 368 ~~lpkea~~iLk~Wf~~H~~nPYPSeeEK~~LA~~TGLs~kQV~NWF~NrRrR~KK~n~ 426 (441)
..||...+.+|.-.+.. + .-.++|+.+|++..-|.+...+.|++.+..+.
T Consensus 196 ~~L~~~erevl~L~~~G-----~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCIRKG-----L----SSKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHHHTT-----C----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 56999999999876422 2 23579999999999999999999999987643
No 126
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.37 E-value=48 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 013509 396 KARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~Nr 417 (441)
..+||+.+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 3579999999999999998764
No 127
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.05 E-value=48 Score=24.11 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChhhhhhhhhhH
Q 013509 396 KARLVQETGLQLKQINNWFINQ 417 (441)
Q Consensus 396 K~~LA~~TGLs~kQV~NWF~Nr 417 (441)
..+||+.+|++...|..|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3579999999999999999875
Done!