BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013510
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R52|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|B Chain B, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|C Chain C, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R52|D Chain D, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
pdb|1R53|A Chain A, Crystal Structure Of The Bifunctional Chorismate Synthase
From Saccharomyces Cerevisiae
Length = 382
Score = 358 bits (920), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/367 (50%), Positives = 236/367 (64%), Gaps = 8/367 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RRRPGQS+++TPR E D
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXX 174
+I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KY
Sbjct: 62 RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121
Query: 175 XXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM------LTL 228
ARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E +T
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181
Query: 229 DQVES-NIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAE 287
++V+S +RCPD A M+ I+ TC+VRN P GLG P FDKLEA
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241
Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQGGISNG 346
LA AM+S+PA+KGFE+GSGF G + GS+HND FY + E +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301
Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
E I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM ALVL D
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361
Query: 407 LMAQHAQ 413
L+ Q A+
Sbjct: 362 LLIQKAR 368
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/364 (35%), Positives = 192/364 (52%), Gaps = 27/364 (7%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR+ G++ TPRKE D
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXX 174
+I SGV E +TGTPI + N R DY + +RPSHAD TY KY
Sbjct: 62 KVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGG 121
Query: 175 XXXXARETIGRVAPGAVAKKILKQFAGT------EILAYVSQAHNVVLPEDVVDHEMLTL 228
ARE+ RVA GA AK +L++ EI ++ ++ + E+ L
Sbjct: 122 GRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGIKAKNYDF---NHALKSEIFAL 178
Query: 229 DQVESNIVRCPDPEYAEK--MIAAIDAXXXXXXXXXXXXTCIVRN--CPRGLGSPVFDKL 284
D+ + E A+K + AI I N P GLG ++ KL
Sbjct: 179 DE---------EQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKL 229
Query: 285 EAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGIS 344
+A++A+AMM L K E+G G + L GSE+ND D+ G + +NRSGG+ GG+S
Sbjct: 230 DAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYND--LMDQKGFL---SNRSGGVLGGMS 284
Query: 345 NGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLM 404
NGE I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++ALVL
Sbjct: 285 NGEEIIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLA 344
Query: 405 DQLM 408
D ++
Sbjct: 345 DMVL 348
>pdb|1SQ1|A Chain A, Crystal Structure Of The Chorismate Synthase From
Campylobacter Jejuni, Northeast Structural Genomics
Target Br19
Length = 370
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/357 (36%), Positives = 182/357 (50%), Gaps = 16/357 (4%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R+ G S+ TPRKE+D
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGXPAGVKFDEEFLQNELDKRKGG-SKFATPRKESD 60
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYXXXXXXXX 174
++ SGV EG TTG PI + V N + DY + +RP+HAD TY KY
Sbjct: 61 KAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGG 120
Query: 175 XXXXARETIGRVAPGAVAKKILKQF---AGTEILAYVSQAHNVVLPEDVVDHEMLTLDQV 231
ARE++ RVA GAVA +L++F + + + N L E+ D E
Sbjct: 121 GRSSARESVARVAGGAVAAXLLREFDICVQSGVFGVGTFVSN--LKEEEFDFEF-----A 173
Query: 232 ESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFDKLEAELAKA 291
+ + + C DP+ I V GLG ++DKL+++LA A
Sbjct: 174 KKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGXLIGLGEVLYDKLDSKLAHA 233
Query: 292 MMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINM 351
+ + A K E+G G + GS +ND +F +N SGGI GGISNGE + +
Sbjct: 234 LXGINAVKAVEIGEGINASKXRGSCNNDALKDGKF-----LSNHSGGILGGISNGENLIL 288
Query: 352 RIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLM 408
+ FKPT +I KQ ++ + + +GRHDPCV R + A V LVL D L+
Sbjct: 289 KTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAXVRLVLADCLL 345
>pdb|1ZTB|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis
pdb|2G85|A Chain A, Crystal Structure Of Chorismate Synthase From
Mycobacterium Tuberculosis At 2.22 Angstrons Of
Resolution
Length = 401
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 171/363 (47%), Gaps = 22/363 (6%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYS 120
R T GESHG + +++G + ++ AD+ L RRR G R E D + S
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLS 61
Query: 121 GVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS-VAY-------RPSHADATYD 163
G+ G T G PI + + NT+ D +E++ VA RP HAD
Sbjct: 62 GIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGM 121
Query: 164 MKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 222
+KY ARET RVA G VA+ L+Q G E+L++V P +
Sbjct: 122 LKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI-GASAPYEGPP 180
Query: 223 HEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFD 282
L ++++ VR D MIA I+A + P GLGS
Sbjct: 181 PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTSG 240
Query: 283 --KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 340
+L+++LA A+M + A KG E+G GF GS +DE Y G +R+ TNR+GG++
Sbjct: 241 DHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS-TNRAGGLE 299
Query: 341 GGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVA 400
GG++NG+ + +R A KP ST+ R TV + + R D C VP A +VE MVA
Sbjct: 300 GGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVA 359
Query: 401 LVL 403
LVL
Sbjct: 360 LVL 362
>pdb|2O11|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase
pdb|2O12|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Fmn
pdb|2QHF|A Chain A, Mycobacterium Tuberculosis Chorismate Synthase In Complex
With Nca
Length = 407
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 171/363 (47%), Gaps = 22/363 (6%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYS 120
R T GESHG + +++G + ++ AD+ L RRR G R E D + S
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLS 61
Query: 121 GVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS-VAY-------RPSHADATYD 163
G+ G T G PI + + NT+ D +E++ VA RP HAD
Sbjct: 62 GIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGM 121
Query: 164 MKYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 222
+KY ARET RVA G VA+ L+Q G E+L++V P +
Sbjct: 122 LKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISI-GASAPYEGPP 180
Query: 223 HEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFD 282
L ++++ VR D MIA I+A + P GLGS
Sbjct: 181 PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTSG 240
Query: 283 --KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 340
+L+++LA A+M + A KG E+G GF GS +DE Y G +R+ TNR+GG++
Sbjct: 241 DHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRS-TNRAGGLE 299
Query: 341 GGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVA 400
GG++NG+ + +R A KP ST+ R TV + + R D C VP A +VE MVA
Sbjct: 300 GGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVA 359
Query: 401 LVL 403
LVL
Sbjct: 360 LVL 362
>pdb|1Q1L|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1Q1L|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 401
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 123/377 (32%), Positives = 177/377 (46%), Gaps = 32/377 (8%)
Query: 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIY 119
Y R T GESHG G+ I++G P +PLSE ++ +L RR+ G R + E DT +I
Sbjct: 8 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEIL 67
Query: 120 SGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAY------------RPSHADATYDMKYX 167
SGV G T G+PI +F+ N D +M++ RP HAD + +KY
Sbjct: 68 SGVRFGKTLGSPIALFIRNRDWENWK-EKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYN 126
Query: 168 XX-XXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYV-----------SQAHNVV 215
ARET RVA GAV KK L +F G +I ++V
Sbjct: 127 QRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKDKSYFA 185
Query: 216 LPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRG 275
PE ++ + ++ E + +R P PE E+ ID N P G
Sbjct: 186 NPEKLLSYH----EKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPG 241
Query: 276 LGSPV-FDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRT 333
LGS + +D+ ++ +A+A S+ A KG E+G GF GS+ +DE E +
Sbjct: 242 LGSHIQWDRRIDGRIAQAXXSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHS 301
Query: 334 NRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVP 393
N GG +GGI+NG I +R+A KP T+ +V E KE + R D VP A
Sbjct: 302 NNLGGTEGGITNGXPIVVRVAXKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASV 361
Query: 394 MVEAMVALVLMDQLMAQ 410
+ EA +A+VL D L+ +
Sbjct: 362 VGEAXLAIVLADALLEK 378
>pdb|4ECD|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
pdb|4ECD|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
Bifidobacterium Longum Chorismate Synthase
Length = 398
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/362 (32%), Positives = 166/362 (45%), Gaps = 19/362 (5%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYS 120
R T GESHG + +I+G P + +S D+ L RRR G R + E D ++ +
Sbjct: 5 LRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVRLLT 64
Query: 121 GVSEGVTTGTPIHVFVPNT-----------DQRGHDYSEMSVAY-----RPSHADATYDM 164
GV G+T G+P+ + + NT D HD RP HAD T
Sbjct: 65 GVRHGLTLGSPVAIEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGMR 124
Query: 165 KYXXXXXX-XXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDH 223
KY ARET RVA G VAK+ L Q G +A+V V D+
Sbjct: 125 KYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQTNPDLPLP 184
Query: 224 EMLTLDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPVFD- 282
L+ ++++ VR D E ++I I+ + P G+G+ V
Sbjct: 185 TPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVESD 244
Query: 283 -KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQG 341
+L+A LA A+M + A KG E+G GF GS+ +DE + G I +NR+GGI+G
Sbjct: 245 RRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEG 304
Query: 342 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 401
G+SNG++I +R A KP +I + TV E+ R D VP A + EAMV L
Sbjct: 305 GMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAMVRL 364
Query: 402 VL 403
L
Sbjct: 365 TL 366
>pdb|1QXO|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
pdb|1QXO|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Oxidized Fmn And Epsp
Length = 388
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 128/375 (34%), Positives = 181/375 (48%), Gaps = 25/375 (6%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
R T GESHG + II+G P +PL+ D+ DL RR+ G R + E D SG
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRXKIENDQVVFTSG 61
Query: 122 VSEGVTTGTPIHVFVPNTD-QRGHDY-----------SEMSVAY-RPSHADATYDMKYX- 167
V G TTG PI V N D Q+ D S+ + + RP HAD +KY
Sbjct: 62 VRHGKTTGAPITXDVINKDHQKWLDIXSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRF 121
Query: 168 XXXXXXXXXXXARETIGRVAPGAVAKKILKQFAGTEILAYVS--QAHNVVLPEDVVDHEM 225
ARET RVA GAVAK++L + EI +V + +PE++ E+
Sbjct: 122 DDLRNSLERSSARETTXRVAVGAVAKRLLAEL-DXEIANHVVVFGGKEIDVPENLTVAEI 180
Query: 226 LT-LDQVESNIVRCPDPEYAEKMIAAIDAXXXXXXXXXXXXTCIVRNCPRGLGSPV-FD- 282
Q E +IV + E +++ ID +V P GLGS V +D
Sbjct: 181 KQRAAQSEVSIV---NQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDR 237
Query: 283 KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDE-FYTDEFGNIRTRTNRSGGIQG 341
KL+A LA+A++S+ A KG E G GF + GS+ DE ++ E G R RTN GG +G
Sbjct: 238 KLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVXDEILWSKEDGYTR-RTNNLGGFEG 296
Query: 342 GISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVAL 401
G +NG+ I +R KP T+ + +V E E R DP +P A + EA+VA
Sbjct: 297 GXTNGQPIVVRGVXKPIPTLYKPLXSVDIETHEPYKATVERSDPTALPAAGXVXEAVVAT 356
Query: 402 VLMDQLMAQHAQCHL 416
VL +++ + + +L
Sbjct: 357 VLAQEILEKFSSDNL 371
>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi
Length = 456
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 16 TDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFG 67
T G+ LP++ ++ P+ +QI + + TP L V+ G F V F
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFA 345
>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal
Permeability-Increasing Protein
Length = 456
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 16 TDGSLGSLLPDLRRQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFG 67
T G+ LP++ ++ P+ +QI + + TP L V+ G F V F
Sbjct: 294 TTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFA 345
>pdb|3BUT|A Chain A, Crystal Structure Of Protein Af_0446 From Archaeoglobus
Fulgidus
Length = 136
Score = 28.9 bits (63), Expect = 5.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 343 ISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIAR 380
I+NGE +R+A KPT IG + V +E+E +
Sbjct: 88 IANGEKTKIRVAIKPTIEIGGRDVEVPVFLRESEFTTK 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,393,892
Number of Sequences: 62578
Number of extensions: 494931
Number of successful extensions: 959
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 16
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)