Query 013510
Match_columns 441
No_of_seqs 195 out of 1048
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:35:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02754 chorismate synthase 100.0 1E-155 2E-160 1182.8 40.7 403 29-431 1-403 (413)
2 COG0082 AroC Chorismate syntha 100.0 9E-153 2E-157 1141.2 35.7 363 53-424 1-366 (369)
3 PF01264 Chorismate_synt: Chor 100.0 2E-147 5E-152 1105.9 25.6 345 61-409 1-346 (346)
4 TIGR00033 aroC chorismate synt 100.0 2E-145 4E-150 1094.2 37.5 351 61-414 1-351 (351)
5 PRK12463 chorismate synthase; 100.0 3E-145 6E-150 1103.8 36.0 363 61-425 1-382 (390)
6 PRK05382 chorismate synthase; 100.0 1E-143 3E-148 1083.4 35.1 355 59-424 1-357 (359)
7 cd07304 Chorismate_synthase Ch 100.0 2E-143 4E-148 1078.1 35.4 343 61-406 1-344 (344)
8 KOG4492 Chorismate synthase [A 100.0 3E-105 6E-110 776.6 22.6 365 55-419 2-366 (368)
9 KOG4492 Chorismate synthase [A 99.5 6.3E-17 1.4E-21 159.3 -6.7 175 229-404 192-367 (368)
10 cd07304 Chorismate_synthase Ch 79.9 3.3 7.2E-05 43.3 5.6 78 61-139 191-294 (344)
11 PF01264 Chorismate_synt: Chor 76.2 0.97 2.1E-05 47.2 0.4 77 62-139 190-292 (346)
12 COG0082 AroC Chorismate syntha 71.7 7.2 0.00016 41.2 5.4 77 62-140 196-298 (369)
13 PF08712 Nfu_N: Scaffold prote 68.1 3.7 8E-05 34.6 2.0 30 284-313 35-64 (87)
14 TIGR00033 aroC chorismate synt 56.1 22 0.00047 37.5 5.5 79 61-139 190-293 (351)
15 PRK05382 chorismate synthase; 51.1 29 0.00062 36.7 5.5 129 257-412 8-142 (359)
16 PLN02948 phosphoribosylaminoim 48.9 33 0.0007 38.1 5.8 65 244-311 451-532 (577)
17 PRK12463 chorismate synthase; 44.7 59 0.0013 34.8 6.7 71 257-354 6-77 (390)
18 TIGR01162 purE phosphoribosyla 44.3 64 0.0014 30.5 6.1 86 192-310 17-119 (156)
19 TIGR02725 phenyl_P_gamma pheny 27.7 50 0.0011 27.5 2.3 45 262-306 17-61 (84)
20 PRK09536 btuD corrinoid ABC tr 26.0 86 0.0019 33.3 4.3 79 189-283 280-358 (402)
21 COG0250 NusG Transcription ant 23.4 1.9E+02 0.0042 27.5 5.7 54 73-126 84-140 (178)
22 smart00739 KOW KOW (Kyprides, 20.4 87 0.0019 19.9 2.0 16 111-126 3-18 (28)
23 PF12242 Eno-Rase_NADH_b: NAD( 20.0 1.8E+02 0.004 24.7 4.2 54 243-303 19-72 (78)
No 1
>PLN02754 chorismate synthase
Probab=100.00 E-value=1.1e-155 Score=1182.81 Aligned_cols=403 Identities=87% Similarity=1.314 Sum_probs=380.1
Q ss_pred ccCCCCceeEeecccCCccccccccccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCC
Q 013510 29 RQLPSPNVQILIRSRTPKKLQVKAAGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITT 108 (441)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~m~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t 108 (441)
|.+++.+|+++++.+.+++|+++|++||||++|||||||||||++||||||||||||+||+|+||+||+||||||++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~~L~RRrpG~~~~~t 80 (413)
T PLN02754 1 RRLSSASVQISLRSRTRKNLQIQAAGSTFGTYFRVTTFGESHGGGVGCVIDGCPPRIPLTEEDMQFDLDRRRPGQSRITT 80 (413)
T ss_pred CCccccccceecccccccceeeecccCccccceEEEEEecCCCCeeEEEEcccCCCCEeCHHHHHHHHhccCCCCCCCCc
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecccCCcccCCcEEEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHH
Q 013510 109 PRKETDTCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAP 188 (441)
Q Consensus 109 ~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaA 188 (441)
||+|.|+|+||||||+|+|||+||+++|+|+||+||||+++++.||||||||+|++|||+|||||||||||||||+||||
T Consensus 81 ~R~E~D~veIlSGv~~G~TtGtPIa~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rd~rGGgRsSaReTa~rVaA 160 (413)
T PLN02754 81 PRKETDTCEILSGVSEGMTLGTPIAVFVPNTDQRGQDYSEMSVAYRPSHADATYDFKYGVRAVQGGGRSSARETIGRVAA 160 (413)
T ss_pred CCCCCCceEEeecccCCCcCCCCeEEEEEcCCCCCCChHHhcCCCCCCCcchhHHHhcCCcccCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 013510 189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268 (441)
Q Consensus 189 GaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~ 268 (441)
||||||||++.+||+|.|||++||+|+.+++..+....++++++++++||||++++++|+++|++||++||||||+|||+
T Consensus 161 GaiAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~GDSlGGivev~ 240 (413)
T PLN02754 161 GAVAKKILKQFAGTEILAYVSQVHDVVLPEDLVDHETLTLEQIESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 240 (413)
T ss_pred HHHHHHHHHhhCCeEEEEEEEEEcCEecccccCCcchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 99999999764699999999999999753211121222367889999999999999999999999999999999999999
Q ss_pred EEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCc
Q 013510 269 VRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348 (441)
Q Consensus 269 ~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~p 348 (441)
++|||+|||||+|||||++||+||||||||||||||+||++++|+|||+||+|+++++|+++++|||+|||+||||||||
T Consensus 241 ~~gvP~GLG~pvfdkLda~LA~Al~SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~p 320 (413)
T PLN02754 241 VRNVPRGLGSPVFDKLEAELAKAMMSLPATKGFEIGSGFAGTLLTGSEHNDEFYMDEHGRIRTRTNRSGGIQGGISNGEI 320 (413)
T ss_pred EECCCCCCCccccccchHHHHHHhcCcCceeEEEEccchhhhhccccccCcceeecCCCceEecccCCCcccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999999987668899999999999999999999
Q ss_pred eEEEEEeccCCcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcCCCC
Q 013510 349 INMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQGTMK 428 (441)
Q Consensus 349 Iv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~ 428 (441)
|+||++|||||||++||+|||++++|++++++||||||++|||+||+|||+||||||++|++++.+....+++.|.+++.
T Consensus 321 Iv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCivprA~pV~EAm~AlvLaD~~L~~~~~~~~~~~~~~~~~~~~ 400 (413)
T PLN02754 321 IVMRIAFKPTSTIGKKQNTVTRDGQETELRARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCELFPINPVLQEPLG 400 (413)
T ss_pred EEEEEEeCCCcccccccccccCCCCEeeeeccCCCCcccccchhHHHHHHHHHHHHHHHHHHhCccccccCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999997655555666777776
Q ss_pred CCC
Q 013510 429 LPE 431 (441)
Q Consensus 429 ~~~ 431 (441)
+..
T Consensus 401 ~~~ 403 (413)
T PLN02754 401 IAS 403 (413)
T ss_pred cCc
Confidence 644
No 2
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-153 Score=1141.20 Aligned_cols=363 Identities=55% Similarity=0.864 Sum_probs=349.7
Q ss_pred cccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcE
Q 013510 53 AGSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPI 132 (441)
Q Consensus 53 m~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPI 132 (441)
|+||||++|||||||||||++||||||||||||+|++||||.||+||||||++++|||+|+|+|+||||||+|+||||||
T Consensus 1 ~~nt~G~~fr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~veIlSGv~~G~TtGtPI 80 (369)
T COG0082 1 MGNTFGRLFRVTTFGESHGPALGAVIDGCPAGLELSEEDIQKELDRRRPGYSRGTTMRKEKDEVEILSGVFEGKTTGTPI 80 (369)
T ss_pred CCCcccceEEEEeecccCCCeeEEEEeccCCCCccCHHHHHHHHHhcCCCCCCCcccccCCcceEEeeeeecCccCCCce
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEee
Q 013510 133 HVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAH 212 (441)
Q Consensus 133 a~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG 212 (441)
+++|+|+||+||||+++++.||||||||||++|||+|||||||||||||||+|||||||||+||.+ +||+|.+||++||
T Consensus 81 ~l~I~N~d~~s~~y~~~~~~pRPGHADyty~~KYg~rD~RgggRsSaReTa~rVAaGAvAKk~L~~-~gi~v~~~v~~iG 159 (369)
T COG0082 81 ALLIENTDQRSKDYSMIKDPPRPGHADYTYGIKYGFRDYRGGGRSSARETAARVAAGAVAKKLLRE-LGIEVLGHVVSIG 159 (369)
T ss_pred EEEEEcCCCCccchhhcccCCCCCcccchhhhhcCccccCCcccchhHHHHHHHHHHHHHHHHHHh-CCeEEEEeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred ceecCCCCCCcccccHhhhhc--CcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHH
Q 013510 213 NVVLPEDVVDHEMLTLDQVES--NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAK 290 (441)
Q Consensus 213 ~i~~~~~~~~~~~~~~~~~~~--~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~ 290 (441)
+++.+.. .+|+++++ |+|+|||++++++|+++|+++|++||||||+|||+|.|||+|||+|+|||||++||+
T Consensus 160 ~~~~~~~------~~~~~~~~~~sp~~~pd~e~~~~m~~~i~~~k~~GDSiGgvvevva~gvP~GLG~pvfdkLda~lA~ 233 (369)
T COG0082 160 GIEADDS------LDFEEVEQRASPVRCPDPEAEEEMEELIDKAKKEGDSIGGVVEVVAEGVPAGLGEPVFDKLDAKLAH 233 (369)
T ss_pred CCccccc------CCHHHHhhccCCccCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEeCCCCCCCCcccccchHHHHH
Confidence 9987531 44666666 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCccccccccccc
Q 013510 291 AMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTR 370 (441)
Q Consensus 291 almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~ 370 (441)
||||||||||||||+||++++|+|||+||+|++++ +++++|||+|||+|||||||||++|++|||||||++||+|||+
T Consensus 234 AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~--~~~~~tN~~GGilGGitnG~pIv~r~a~KPt~SI~kp~~TVd~ 311 (369)
T COG0082 234 ALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG--GIVRKTNNAGGILGGITNGEPIVVRVAFKPTPSIYKPQRTVDL 311 (369)
T ss_pred HhhCCccceeEEeccchhhhhcccccccCceeeCC--CeeEccccCCceeccccCCccEEEEEEeCCCCccCccccceEc
Confidence 99999999999999999999999999999999965 8999999999999999999999999999999999999999998
Q ss_pred C-CceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhc
Q 013510 371 E-KKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 424 (441)
Q Consensus 371 ~-~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~ 424 (441)
+ +++.++.++||||||++|||+||+|||+||||||++|++++++...+++..+.
T Consensus 312 ~t~e~~~~~~kgRhDpcv~prAvpV~EamvA~vLaD~~L~~~~~~~~~~~~~~~~ 366 (369)
T COG0082 312 ETGEEVEASTKGRHDPCVVPRAVPVVEAMVALVLADHLLRKFGQDPDVELKRRVA 366 (369)
T ss_pred ccCCeeEEEecCcCCCccccchhHHHHHHHHHHHHHHHHHhhCCCcchhhcccch
Confidence 8 58889999999999999999999999999999999999999998888766543
No 3
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=100.00 E-value=2.3e-147 Score=1105.86 Aligned_cols=345 Identities=54% Similarity=0.874 Sum_probs=311.3
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCC
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D 140 (441)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|+|+++||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N~d 80 (346)
T PF01264_consen 1 FRVTTFGESHGPAIGVVIDGCPAGLPIDEEDIQKELDRRRPGYGRGTTMRKEKDEVEILSGVFEGKTTGAPIAMIIRNKD 80 (346)
T ss_dssp SEEEEEESTTSSEEEEEEES--BTEB--HHHHHHHHHHHTCSTTCCCCHHHCSCEEEEEESEETTEEESS-EEEEEE-TT
T ss_pred CeEeeeecCCCCeeEEEEcCCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCeEEEEeceECCEeCCCCeEEEEECCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCC
Q 013510 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (441)
Q Consensus 141 ~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~~ 220 (441)
|+||||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++.
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgggr~SaReTa~rvaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~-- 157 (346)
T PF01264_consen 81 QRSWDYEELKDIPRPGHADYTGFLKYGFRDYRGGGRSSARETAPRVAAGAIAKQLLEE-LGIEIRSHVSSIGGIEDRE-- 157 (346)
T ss_dssp CHHCTTCTSTSSE-TTSSHHHHHHHHT-SSTHHHHHHSGGHHHHHHHHHHHHHHHHHC-TTEEEEEEEEEETTEEECC--
T ss_pred CCCcchhhhhhcCCCCcccccceeccCCcCCcchhhhHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEhheeCCEeccc--
Confidence 9999999999999999999999999999999999999999999999999999999997 6999999999999998763
Q ss_pred CCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccE
Q 013510 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (441)
Q Consensus 221 ~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKG 300 (441)
.......++++++++++|+|++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+||||||||||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~fdkLda~la~al~sIpAvKg 237 (346)
T PF01264_consen 158 DDPSEEDFEKIEESPVRCPDPEAEEEMKELIDEAKKEGDSLGGIVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVKG 237 (346)
T ss_dssp HHHHHHHHHHHHHSTTSBSSHHHHHHHHHHHHHHHHTTGGB-EEEEEEEES--TT-SBSSCCSHHHHHHHHHHTSTTEEE
T ss_pred ccchhhhhhhhhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCCCCCCcCcHHHHHHHHhhCCCCeee
Confidence 12234557789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCC-ceeeeec
Q 013510 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-KETELIA 379 (441)
Q Consensus 301 VEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~-~e~~~~~ 379 (441)
||||+||++++|+|||+||+|++++ ++++++|||+|||+|||||||||+||++|||||||++||+|||+.+ +++++.+
T Consensus 238 vEfG~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~aGGI~GGISnG~pIv~r~a~KPtpSI~~~q~TVdl~~~e~~~~~i 316 (346)
T PF01264_consen 238 VEFGDGFEAASMRGSEVNDEIYYDD-GKIKRKTNNAGGILGGISNGMPIVFRVAFKPTPSIAKPQKTVDLKTGEEATLEI 316 (346)
T ss_dssp EEETTGGGGGGSBHHHHS-SEEECT-TTEEESS-TTTTEETTEEBSS-EEEEEEE--SS--SSCEEEEBTTTSSEEEEC-
T ss_pred EEecCcHHHhhcchhhcccceeccc-ccccccCCCcccccccccCCceEEEEEEecccccccccccccccCCCCEEEEec
Confidence 9999999999999999999999976 5799999999999999999999999999999999999999999655 7888999
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHHHH
Q 013510 380 RGRHDPCVVPRAVPMVEAMVALVLMDQLMA 409 (441)
Q Consensus 380 ~gRhDpCivpRA~pVvEAm~AlvLaD~~L~ 409 (441)
+||||||++|||+||+|||+||||||++|+
T Consensus 317 ~gRhDpcivpra~~V~Eam~Alvlad~~Le 346 (346)
T PF01264_consen 317 KGRHDPCIVPRAVPVVEAMVALVLADALLE 346 (346)
T ss_dssp -SSS-SCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccchHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999996
No 4
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=100.00 E-value=1.6e-145 Score=1094.20 Aligned_cols=351 Identities=58% Similarity=0.931 Sum_probs=337.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCC
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D 140 (441)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~aig~vIdG~PaGl~l~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (351)
T TIGR00033 1 FRVTTFGESHGKAVGAIIDGCPAGLPLTEEDIQPDLDRRRPGYSRGTRMRKENDEVEILSGVFEGKTTGAPIALMIRNKD 80 (351)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCCC
Q 013510 141 QRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220 (441)
Q Consensus 141 ~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~~ 220 (441)
++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++.+||+|.|||+|||+|+.+..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~t~~~KYg~~D~rgggr~SaReTa~rVaaGaiAk~~L~~~~gI~i~s~v~~IG~i~~~~~- 159 (351)
T TIGR00033 81 VRSSDYSDIRTFPRPGHADYTYWLKYGIDDYRGGGRSSARETAARVAAGAVAKKLLAETSGIEIVAYVTQIGEVEIPRV- 159 (351)
T ss_pred CCcccchhccCCCCCCCcchhhHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEECCEecCcc-
Confidence 9999999999999999999999999999999999999999999999999999999987469999999999999975321
Q ss_pred CCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccE
Q 013510 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKG 300 (441)
Q Consensus 221 ~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKG 300 (441)
.....++++++++++||||++++++|+++|++||++||||||+|||+|+|||+|||+|+|||||++||+||||||||||
T Consensus 160 -~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKg 238 (351)
T TIGR00033 160 -YYDPEEKERVDSSPVRCPDPEAEKEMVAEIDKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKG 238 (351)
T ss_pred -ccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeE
Confidence 1112236789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCceeeeecC
Q 013510 301 FEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIAR 380 (441)
Q Consensus 301 VEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~ 380 (441)
||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||++||+|||++++|++++++
T Consensus 239 vE~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~tN~~GGI~GGISnG~pIv~r~a~KP~pSI~~~q~TVd~~~~e~~~~~~ 317 (351)
T TIGR00033 239 VEIGDGFELASMRGSEANDEFVFED-GGIRRKTNNSGGILGGITNGEPIRVRIAFKPTPTIGKPQKTVDLDTEEPALATK 317 (351)
T ss_pred EEECcchhhccccccccccceEeCC-CceEecCcCcccccccccCCCcEEEEEEeCCCcccccccccccCCCCEeeeecC
Confidence 9999999999999999999999865 679999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 013510 381 GRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQC 414 (441)
Q Consensus 381 gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~ 414 (441)
||||||++|||+||+|||+||||||++|+++++|
T Consensus 318 gRhDpCivpra~~V~Eam~AlvLad~~l~~~~~d 351 (351)
T TIGR00033 318 GRHDPCVVPRAVPVVEAMTALVLADALLEQRASD 351 (351)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999865
No 5
>PRK12463 chorismate synthase; Reviewed
Probab=100.00 E-value=2.9e-145 Score=1103.79 Aligned_cols=363 Identities=37% Similarity=0.542 Sum_probs=345.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCC
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D 140 (441)
|||||||||||++||||||||||||+||+|+||+||+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~tt~GESHG~~ig~VIdG~PaGl~l~~e~I~~~L~RR~pG~~~~~t~r~E~D~v~ilSGv~~G~TtGtPI~~~I~N~D 80 (390)
T PRK12463 1 MRYITAGESHGPQLTVILEGVPAGLTLAAEHINKELLRRQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLIVKNDD 80 (390)
T ss_pred CeEeecccCCCceeEEEEcCCCCCCccCHHHHHHHHhccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------------CCCccccccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEE
Q 013510 141 QR---------------GHDYSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEI 204 (441)
Q Consensus 141 ~~---------------s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~lL~~~~GI~I 204 (441)
|+ |+||+++++.||||||||+|++|||++|+||| |||||||||+||||||||||||++ +||+|
T Consensus 81 ~~nw~~~m~~~~~~~~~s~dy~~~~~~pRPGHAD~~~~~KYg~~D~Rgglgr~SaReTa~rVaaGavAk~~L~~-~gI~i 159 (390)
T PRK12463 81 FKHWTKVMGAEPISEKESKEMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKE-LGVEI 159 (390)
T ss_pred CCcchhccCccccccccchhhhcccCCCCCCCcchhhHHhcCCcccCCCcccchHHHHHHHHHHHHHHHHHHHH-CCEEE
Confidence 99 89999999999999999999999999999999 999999999999999999999986 79999
Q ss_pred EEEEEEeeceecCCCCCCcccccHhh-hhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcc-cC
Q 013510 205 LAYVSQAHNVVLPEDVVDHEMLTLDQ-VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV-FD 282 (441)
Q Consensus 205 ~s~v~~IG~i~~~~~~~~~~~~~~~~-~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~-fd 282 (441)
.|||++||+|+.... .+.+..++.+ +++|+++|||++++++|+++|++||++||||||+|||+|+|||+|||||+ ||
T Consensus 160 ~s~v~~IG~v~~~~~-~~~~~~~~~~~~~~s~~~c~d~~~~~~m~~~I~~ak~~gDSlGGivev~~~gvP~GLGspv~fd 238 (390)
T PRK12463 160 AGHVLEIGGVKAKHI-SNLSIEEIQTITENSPVRCLDKTVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYD 238 (390)
T ss_pred EEEEEEECCEecCcc-cccCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCCCCCCCCcccc
Confidence 999999999975310 0111122333 88999999999999999999999999999999999999999999999999 98
Q ss_pred -chHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcc
Q 013510 283 -KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTI 361 (441)
Q Consensus 283 -kLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI 361 (441)
|||++||+||||||||||||||+||++|.|+|||+||+|+++++++++|+|||+|||+|||||||||+||++|||||||
T Consensus 239 ~kLda~LA~A~msIpAVKgVE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~~tN~aGGI~GGISnG~pIv~r~a~KP~pSi 318 (390)
T PRK12463 239 RKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTL 318 (390)
T ss_pred ccchHHHHHHhcCcCceeEEEEccchhhhhCCCcccCceeEecCCCCeeecccCcccccccccCCCcEEEEEEECCcccc
Confidence 9999999999999999999999999999999999999999876678999999999999999999999999999999999
Q ss_pred cccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcC
Q 013510 362 GRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425 (441)
Q Consensus 362 ~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 425 (441)
++||+|||+.++|.+...+||||||++|||+||+|||+||||||++|++|++|+|+||+++|+.
T Consensus 319 ~~pq~TVd~~t~e~~~~~~gRhDpc~vprA~~V~Eam~A~vLad~~l~~fg~d~~~~~~~~~~~ 382 (390)
T PRK12463 319 YKPLASVDIDTKEAFQASIERSDSCAVPAAGVVAESVVAWELAHALVEQFGKDRMELIQQNITQ 382 (390)
T ss_pred cccccCcccCCCceeeecCCCCCCccccchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999988888999999999999999999999999999999999999999998853
No 6
>PRK05382 chorismate synthase; Validated
Probab=100.00 E-value=1.2e-143 Score=1083.41 Aligned_cols=355 Identities=55% Similarity=0.866 Sum_probs=338.6
Q ss_pred cceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeC
Q 013510 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (441)
Q Consensus 59 ~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N 138 (441)
++|||+|||||||++|||||||||||++||+|+||+||+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|
T Consensus 1 ~~~r~ttfGESHG~aig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtG~PI~~~I~N 80 (359)
T PRK05382 1 KLFRVTTFGESHGPALGAVIDGCPAGLPLTEEDIQKELDRRRPGYSRGTTMRIEPDEVEILSGVFEGKTTGTPIALLIRN 80 (359)
T ss_pred CeEEEEEEecCCCCeeEEEEcCCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCeEEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCC
Q 013510 139 TDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE 218 (441)
Q Consensus 139 ~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i~~~~ 218 (441)
+|++|+||+++++.||||||||||++|||++|+||||||||||||+||||||||||||++ +||+|.|||++||+|+..
T Consensus 81 ~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~- 158 (359)
T PRK05382 81 TDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE-LGIEVRGHVVQIGGIEAD- 158 (359)
T ss_pred CCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH-CCeEEEEEEEEEcCCcCC-
Confidence 999999999999999999999999999999999999999999999999999999999986 799999999999999642
Q ss_pred CCCCcccccH-hhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCc
Q 013510 219 DVVDHEMLTL-DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPA 297 (441)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpA 297 (441)
.+ ..++ ++++++++||||++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+|||||||
T Consensus 159 --~~--~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~la~a~msIpA 234 (359)
T PRK05382 159 --LD--WEEVEERADANPVRCPDPEAEEEMEELIDEAKKEGDSLGGVVEVVAEGVPAGLGEPVFDKLDADLAHALMSINA 234 (359)
T ss_pred --CC--HHHHHhHhhcCCcCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCc
Confidence 11 1123 457789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCC-ceee
Q 013510 298 TKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREK-KETE 376 (441)
Q Consensus 298 VKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~-~e~~ 376 (441)
|||||||+||++++|+|||+||+|+++ +++|+|||+|||+|||||||||+||++|||||||++||+|||+.+ ++++
T Consensus 235 vKgvE~G~Gf~~a~~~GSe~nD~~~~~---~~~~~tN~~GGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvdl~t~e~~~ 311 (359)
T PRK05382 235 VKGVEIGDGFAAARLRGSEVNDEIYYT---GIGRLTNHAGGILGGISNGEPIVVRVAFKPTPSIRKPQRTVDIRTGEPTE 311 (359)
T ss_pred eeEEEECcchhhccccCcccCceeecC---CCeecccCCCCccccccCCCcEEEEEEecCcchhcccccCcccccCCeee
Confidence 999999999999999999999999752 489999999999999999999999999999999999999999766 5559
Q ss_pred eecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhc
Q 013510 377 LIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 424 (441)
Q Consensus 377 ~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~ 424 (441)
++++||||||++|||+||+|||+||||||++|++ ++++.+++++|.
T Consensus 312 ~~~~gRhDpcivpra~~V~Eam~A~vLad~~l~~--~~~~~~~~~~~~ 357 (359)
T PRK05382 312 LATKGRHDPCVVPRAVPVAEAMVALVLADHLLRK--RDQLGEVKRNVP 357 (359)
T ss_pred eccCCCCCCEeecchHHHHHHHHHHHHHHHHHHc--CCchhhHhhccc
Confidence 9999999999999999999999999999999998 679999999875
No 7
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=100.00 E-value=1.6e-143 Score=1078.09 Aligned_cols=343 Identities=59% Similarity=0.897 Sum_probs=329.9
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCC
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D 140 (441)
|||+|||||||++||||||||||||+||+|+||+||+||||||++++|||+|.|+|+||||||+|+|||+||+++|+|+|
T Consensus 1 ~r~ttfGESHG~~ig~vIdG~PaGl~i~~e~i~~~L~RR~pG~~~~~t~R~E~D~v~ilSGv~~g~TtGtPI~~~I~N~d 80 (344)
T cd07304 1 FRVTTFGESHGPALGVVIDGCPAGLPLDEEDIQKELDRRRPGQGRGTTPRIEKDEVEILSGVFEGKTTGTPIALLIRNKD 80 (344)
T ss_pred CeEEEeecCCCCeeEEEEccCCCCCEeCHHHHHHHHHccCCCCCCCCCCCCCCCceEEeecccCCCcCCCCEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCCCCCcccccccccccC-CCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeeceecCCC
Q 013510 141 QRGHDYSEMSVAYRPSHADATYDMKYGV-RSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPED 219 (441)
Q Consensus 141 ~~s~dY~~~~~~pRPGHAD~t~~~KYg~-rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~ 219 (441)
|+||||+++++.||||||||+|++|||+ +|+||||||||||||+||||||||||||++ +||+|.|||++||+|+++..
T Consensus 81 ~~s~dy~~~~~~pRPGHAD~~~~~KYg~~~d~~gggr~SaReTa~rVaaGaiAk~~L~~-~gI~i~s~v~~IG~i~~~~~ 159 (344)
T cd07304 81 QRSWDYSMLKTLPRPGHADYTGFLKYGGFDDRRGGGRSSARETAARVAAGAVAKKLLKE-FGIEVVAHVKSIGGIEDEPF 159 (344)
T ss_pred CCCcchhhccCCCCCCccccchhhccCCccccCccchhHHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECCEecCcc
Confidence 9999999999999999999999999987 999999999999999999999999999998 59999999999999987532
Q ss_pred CCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCccc
Q 013510 220 VVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATK 299 (441)
Q Consensus 220 ~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVK 299 (441)
... ....+++++++++||||++++++|+++|++||++||||||+|||+|+|||+|||||+|||||++||+|||||||||
T Consensus 160 ~~~-~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f~klda~la~a~~sIpAvK 238 (344)
T cd07304 160 DLD-EEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGDSVGGVVEVVATGVPAGLGSPVFDKLDARLAQALMSIPAVK 238 (344)
T ss_pred ccc-chhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCCCCCccccccchHHHHHHhcCcCcee
Confidence 111 1113678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCceeeeec
Q 013510 300 GFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIA 379 (441)
Q Consensus 300 GVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~ 379 (441)
|||||+||++++|+|||+||+|++++ ++++|+|||+|||+|||||||||+||++|||||||++||+|||++++++++++
T Consensus 239 gve~G~Gf~~a~~~GSe~nD~~~~~~-~~~~~~TN~aGGI~GGISnG~pIv~rva~KP~pSi~~~q~Tvd~~~~~~~~~~ 317 (344)
T cd07304 239 GVEIGSGFEAARMRGSEVNDEIYYDE-GGIKTKTNNAGGILGGISNGEPIVFRVAFKPTPSIAKPQKTVDLTGEETELAV 317 (344)
T ss_pred EEEECcchhhhhccCcccCcceeeCC-CceeecccCccCccccccCCCcEEEEEEeCCCccccccccceeCCCCEeeeec
Confidence 99999999999999999999999975 58999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhHHHHHHHHHHHHHH
Q 013510 380 RGRHDPCVVPRAVPMVEAMVALVLMDQ 406 (441)
Q Consensus 380 ~gRhDpCivpRA~pVvEAm~AlvLaD~ 406 (441)
+||||||++|||+||+|||+||||||+
T Consensus 318 ~gRhDpcivpra~~V~Eam~A~vlad~ 344 (344)
T cd07304 318 KGRHDPCAVPRAVPVVEAMVALVLADA 344 (344)
T ss_pred CCCCCcCcccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999995
No 8
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-105 Score=776.57 Aligned_cols=365 Identities=83% Similarity=1.283 Sum_probs=355.8
Q ss_pred cccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEE
Q 013510 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHV 134 (441)
Q Consensus 55 ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~ 134 (441)
|+||++||+||+||||-+.+|||+||||+|..|++.|||.+|-||||||++++|||+|+|+|+|.||--.|+|+|+||+|
T Consensus 2 SsFGtLFrVTTYGESHCKSVGCIVdGcPPGM~LTEsD~Q~QLTRRRPGQS~LtTPR~EKD~V~IQSGTEFG~TLGTPI~M 81 (368)
T KOG4492|consen 2 SSFGTLFRVTTYGESHCKSVGCIVDGCPPGMPLTESDLQFQLTRRRPGQSRLTTPRKEKDTVRIQSGTEFGMTLGTPIHM 81 (368)
T ss_pred CcccceEEEeeeccccCcccceEeccCCCCCCcchhhcceeeeccCCCccccCCCccccceEEEecCcccceecCCceEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeece
Q 013510 135 FVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNV 214 (441)
Q Consensus 135 ~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~i 214 (441)
+|.|+||+..||+.+...|||+||||||..|||..--.||||+|||||+.|||+||||+|+|++++|++|.+||+|||.|
T Consensus 82 ~v~N~DQrPHDYSDMD~~PRPSHAD~TY~EKYGvKASSGGGRsSARETIGRVA~GAiAeK~L~q~~gvEIvAfVsqvg~i 161 (368)
T KOG4492|consen 82 FVPNTDQRPHDYSDMDVAPRPSHADATYDEKYGVKASSGGGRSSARETIGRVAPGALAKKILKQFAGTEILAYVSQVHHV 161 (368)
T ss_pred EccCCcCCCCchhhhccCCCCcccccchhhhcCeeeccCCCchhhhhhhhccCchHHHHHHHHHhcCceEEeEecccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhcc
Q 013510 215 VLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294 (441)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almS 294 (441)
..+.+..+.+...++++++++++|||++.+++|.+.|++.+-++||+||++.|++.|.|-|||.|+||+|++.||++|||
T Consensus 162 ~~p~~~~d~e~~T~E~~~~~~~rcpn~~~ae~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s 241 (368)
T KOG4492|consen 162 VLPEELVDHENLTLEQIENNIVRCPNPEYAEKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMS 241 (368)
T ss_pred ecchhhcCcchhhhhhhcccceeCCCHHHHHHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcC
Confidence 99876666677788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCce
Q 013510 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKE 374 (441)
Q Consensus 295 IpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~e 374 (441)
+|+-||+|||+||......|+++||+||.+..+.++++||++||++||||||+-|.++++|||+.||...|.|+...+.+
T Consensus 242 ~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~ee~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e 321 (368)
T KOG4492|consen 242 LPATKGFEFGSGFAGTFLTGLEHNDEFYTDENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVE 321 (368)
T ss_pred CcchhhhhhhccceeeccccccccCcccccccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcc
Confidence 99999999999999999999999999999877889999999999999999999999999999999999999999999999
Q ss_pred eeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCcccc
Q 013510 375 TELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPI 419 (441)
Q Consensus 375 ~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~ 419 (441)
.++.++||||||++|||+|++|||+|+||+|.+|.+...+....+
T Consensus 322 ~~~~a~grhdp~v~pravp~veam~alvlvd~l~~q~a~~~~~~v 366 (368)
T KOG4492|consen 322 TEMIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCHLFPI 366 (368)
T ss_pred eeEeeccccCcccCccchhhhhhhccceehhHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999988765443
No 9
>KOG4492 consensus Chorismate synthase [Amino acid transport and metabolism]
Probab=99.55 E-value=6.3e-17 Score=159.32 Aligned_cols=175 Identities=5% Similarity=-0.205 Sum_probs=160.4
Q ss_pred hhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEeccccc
Q 013510 229 DQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 308 (441)
Q Consensus 229 ~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEfG~GF~ 308 (441)
+.+.+...+|+....+..|...+-.++..-|+.+++|.|...+||-|++||.|+|+++.+|+++|++++-|-.++|.+|+
T Consensus 192 e~m~k~i~~~r~~~~s~ggvvtc~vrn~p~glg~p~fdklea~la~a~~s~pa~Kgfe~gsgf~g~~~~g~~hnd~fy~e 271 (368)
T KOG4492|consen 192 EKMIAAIDAVRTKGNSVGGVVTCIVRNAPRGLGTPVFDKLEAELAKACMSLPATKGFEFGSGFAGTFLTGLEHNDEFYTD 271 (368)
T ss_pred HHHHHHHHhccCCCccccceEEEEEecCCCCCCCchHHHHHHHHHHHhcCCcchhhhhhhccceeeccccccccCccccc
Confidence 45566678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccceeecC-CCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCceeeeecCCcccccc
Q 013510 309 GTFLTGSEHNDEFYTDE-FGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCV 387 (441)
Q Consensus 309 ~a~~~GSe~nD~~~~~~-~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~e~~~~~~gRhDpCi 387 (441)
-+-+++.+||-++-.. .+.....+|+++|+.+++|+|+...+-..+|-..+|.-.|++=-..+-...+.+++|||+|+
T Consensus 272 -e~~r~rt~tn~sgg~qggisnGe~in~sv~fk~~~tig~~q~t~t~dk~e~~~~a~grhdp~v~pravp~veam~alvl 350 (368)
T KOG4492|consen 272 -ENGRIRTRTNRSGGIQGGISNGEIINMRVAFKPTSTIGRKQNTVTRDKVETEMIARGRHDPCVVPRAVPMVEAMVALVL 350 (368)
T ss_pred -ccccceeecccccccccccccceeeeeeccccccccccceeeeeeccCcceeEeeccccCcccCccchhhhhhhcccee
Confidence 8889999999987422 23456789999999999999999999999999999999999888888889999999999999
Q ss_pred ccchhHHHHHHHHHHHH
Q 013510 388 VPRAVPMVEAMVALVLM 404 (441)
Q Consensus 388 vpRA~pVvEAm~AlvLa 404 (441)
+||+.+..|+|.++++.
T Consensus 351 vd~l~~q~a~~~~~~v~ 367 (368)
T KOG4492|consen 351 VDQLMAQYAQCHLFPIN 367 (368)
T ss_pred hhHHHHHHHHhhccccC
Confidence 99999999999998864
No 10
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=79.92 E-value=3.3 Score=43.29 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=51.8
Q ss_pred eEEeeeecccCCeeeEEeecCCCCcc--CCHHHHHHHhhh--------------------cCCCCCCCCCCCCCCCeEEE
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIP--LSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKI 118 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~--i~~e~I~~eL~R--------------------RrpG~~r~~t~R~E~D~v~I 118 (441)
.+.---|+|-|..+-|++.|||+||= +. +.|+..|.. +.+|..--.....+.+++..
T Consensus 191 ~~ak~~gDSlGG~ve~~~~gvP~GLG~p~f-~klda~la~a~~sIpAvKgve~G~Gf~~a~~~GSe~nD~~~~~~~~~~~ 269 (344)
T cd07304 191 DEAKKEGDSVGGVVEVVATGVPAGLGSPVF-DKLDARLAQALMSIPAVKGVEIGSGFEAARMRGSEVNDEIYYDEGGIKT 269 (344)
T ss_pred HHHHHcCCCCceEEEEEEECCCCCCCcccc-ccchHHHHHHhcCcCceeEEEECcchhhhhccCcccCcceeeCCCceee
Confidence 44556899999999999999999982 32 555555533 23343222223334444443
Q ss_pred E----ecccCCcccCCcEEEEEeCC
Q 013510 119 Y----SGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 119 l----SGv~~G~TtGaPIa~~I~N~ 139 (441)
. .|+.-|.|+|.||-+.+.=+
T Consensus 270 ~TN~aGGI~GGISnG~pIv~rva~K 294 (344)
T cd07304 270 KTNNAGGILGGISNGEPIVFRVAFK 294 (344)
T ss_pred cccCccCccccccCCCcEEEEEEeC
Confidence 3 58899999999999987533
No 11
>PF01264 Chorismate_synt: Chorismate synthase; InterPro: IPR000453 Chorismate synthase (4.2.3.5 from EC) catalyzes the last of the seven steps in the shikimate pathway which is used in prokaryotes, fungi and plants for the biosynthesis of aromatic amino acids. It catalyzes the 1,4-trans elimination of the phosphate group from 5-enolpyruvylshikimate-3-phosphate (EPSP) to form chorismate which can then be used in phenylalanine, tyrosine or tryptophan biosynthesis. Chorismate synthase requires the presence of a reduced flavin mononucleotide (FMNH2 or FADH2) for its activity. Chorismate synthase from various sources shows a high degree of sequence conservation [, ]. It is a protein of about 360 to 400 amino-acid residues.; GO: 0004107 chorismate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 4ECD_B 1Q1L_D 1QXO_A 1UMF_B 1UM0_D 1SQ1_A 2O12_A 2O11_A 1ZTB_A 2QHF_A ....
Probab=76.21 E-value=0.97 Score=47.21 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=46.7
Q ss_pred EEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------cCCCCCCCCCCCCCCCeEEEE
Q 013510 62 RVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY 119 (441)
Q Consensus 62 r~ttfGESHG~aig~VIdG~PaGl--~i~~e~I~~eL~R--------------------RrpG~~r~~t~R~E~D~v~Il 119 (441)
+..--|.|-|..+-|++.|||+|| ++ .|.|+..|.. +.+|..--.....+.+++...
T Consensus 190 ~ak~~gDSlGG~ve~~~~gvP~GLG~p~-fdkLda~la~al~sIpAvKgvEfG~Gf~~a~~~GSe~nD~~~~~~~~~~~~ 268 (346)
T PF01264_consen 190 EAKKEGDSLGGIVEVVATGVPAGLGSPV-FDKLDARLAQALMSIPAVKGVEFGDGFEAASMRGSEVNDEIYYDDGKIKRK 268 (346)
T ss_dssp HHHHTTGGB-EEEEEEEES--TT-SBSS-CCSHHHHHHHHHHTSTTEEEEEETTGGGGGGSBHHHHS-SEEECTTTEEES
T ss_pred HHHHhCCCCCeEEEEEEEecCCCCCCCC-cCcHHHHHHHHhhCCCCeeeEEecCcHHHhhcchhhcccceeccccccccc
Confidence 344579999999999999999998 44 5577766643 334432222223334444443
Q ss_pred ----ecccCCcccCCcEEEEEeCC
Q 013510 120 ----SGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 120 ----SGv~~G~TtGaPIa~~I~N~ 139 (441)
.|+.-|.|+|.||-+.+-=+
T Consensus 269 tN~aGGI~GGISnG~pIv~r~a~K 292 (346)
T PF01264_consen 269 TNNAGGILGGISNGMPIVFRVAFK 292 (346)
T ss_dssp S-TTTTEETTEEBSS-EEEEEEE-
T ss_pred CCCcccccccccCCceEEEEEEec
Confidence 38889999999999987543
No 12
>COG0082 AroC Chorismate synthase [Amino acid transport and metabolism]
Probab=71.74 E-value=7.2 Score=41.20 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=53.2
Q ss_pred EEeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------cCCCCCCCCCCCCCCCeEEEE
Q 013510 62 RVTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY 119 (441)
Q Consensus 62 r~ttfGESHG~aig~VIdG~PaGl--~i~~e~I~~eL~R--------------------RrpG~~r~~t~R~E~D~v~Il 119 (441)
++.--|.|=|..|-+|..|+|+|| ++ .+.++.+|++ +++|.....-...+. .+.+.
T Consensus 196 ~~k~~GDSiGgvvevva~gvP~GLG~pv-fdkLda~lA~AlmsI~AvKGVEiG~GF~~a~~~GSe~~De~~~~~-~~~~~ 273 (369)
T COG0082 196 KAKKEGDSIGGVVEVVAEGVPAGLGEPV-FDKLDAKLAHALMSIPAVKGVEIGDGFEAARMRGSEANDEITLDG-GIVRK 273 (369)
T ss_pred HHHhcCCCcccEEEEEEeCCCCCCCCcc-cccchHHHHHHhhCCccceeEEeccchhhhhcccccccCceeeCC-CeeEc
Confidence 344568999999999999999998 34 5566666643 445543333333333 44444
Q ss_pred ----ecccCCcccCCcEEEEEeCCC
Q 013510 120 ----SGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 120 ----SGv~~G~TtGaPIa~~I~N~D 140 (441)
.|+.-|.|+|-||-+-+.=+-
T Consensus 274 tN~~GGilGGitnG~pIv~r~a~KP 298 (369)
T COG0082 274 TNNAGGILGGITNGEPIVVRVAFKP 298 (369)
T ss_pred cccCCceeccccCCccEEEEEEeCC
Confidence 388999999999999886443
No 13
>PF08712 Nfu_N: Scaffold protein Nfu/NifU N terminal; InterPro: IPR014824 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This domain is found at the N terminus of NifU (from NIF system) and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the assembly of iron-sulphur clusters, functioning as scaffolds [, ]. ; GO: 0005506 iron ion binding; PDB: 2FFM_A 1PQX_A 2K1H_A.
Probab=68.09 E-value=3.7 Score=34.58 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=24.0
Q ss_pred hHHHHHHHhccCCcccEEEecccccccccC
Q 013510 284 LEAELAKAMMSLPATKGFEVGSGFAGTFLT 313 (441)
Q Consensus 284 Lda~LA~almSIpAVKGVEfG~GF~~a~~~ 313 (441)
-++-||++||.|+.||+|-||.-|=.....
T Consensus 35 ~~spLA~~Lf~i~gV~~Vf~~~dfItVtK~ 64 (87)
T PF08712_consen 35 SDSPLAQALFAIPGVKSVFIGDDFITVTKN 64 (87)
T ss_dssp TS-HHHHHHHTSTTEEEEEEETTEEEEEE-
T ss_pred ccCHHHHHhcCCCCEeEEEEECCEEEEeeC
Confidence 357899999999999999999988665543
No 14
>TIGR00033 aroC chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation.
Probab=56.08 E-value=22 Score=37.51 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=50.0
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCH-HHHHHHhhh--------------------cCCCCCCCCCCCCCCCeEEEE
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSE-ADMQVDLDR--------------------RRPGQSRITTPRKETDTCKIY 119 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~-e~I~~eL~R--------------------RrpG~~r~~t~R~E~D~v~Il 119 (441)
-+.-.-|.|-|..+-|++.|+|+||=-.. +.|+..|.. +.+|.---.....+.+++...
T Consensus 190 ~~a~~~gDSlGG~ve~~~~gvP~GLG~p~f~kLda~La~a~msIpAvKgvE~G~Gf~~a~~~GSe~nD~~~~~~~~~~~~ 269 (351)
T TIGR00033 190 DKAKKDGDSIGGVVECVARNVPVGLGEPLFDKLDARLAHAMMSIPAVKGVEIGDGFELASMRGSEANDEFVFEDGGIRRK 269 (351)
T ss_pred HHHHhcCCCCCcEEEEEEECCCCCCCCCccccchHHHHHHhcCcCceeEEEECcchhhccccccccccceEeCCCceEec
Confidence 44556799999999999999999996332 334444432 223421111112234444433
Q ss_pred ----ecccCCcccCCcEEEEEeCC
Q 013510 120 ----SGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 120 ----SGv~~G~TtGaPIa~~I~N~ 139 (441)
.|+.-|.|+|.||-+.+.=+
T Consensus 270 tN~~GGI~GGISnG~pIv~r~a~K 293 (351)
T TIGR00033 270 TNNSGGILGGITNGEPIRVRIAFK 293 (351)
T ss_pred CcCcccccccccCCCcEEEEEEeC
Confidence 48889999999999887533
No 15
>PRK05382 chorismate synthase; Validated
Probab=51.11 E-value=29 Score=36.75 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=68.5
Q ss_pred cCCccccEEEEEEEeCCCCcCCcc-cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCC
Q 013510 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (441)
Q Consensus 257 ~GDSlGGvve~~~~gvP~GLG~p~-fdkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (441)
-|.|-|-.+-|++.|+|+||= + .+.|+..|..---+ +|. ...+ -.-.| .+...
T Consensus 8 fGESHG~aig~vIdG~PaGl~--i~~e~i~~~L~RR~pG--------~~~---~~t~--R~E~D--------~v~il--- 61 (359)
T PRK05382 8 FGESHGPALGAVIDGCPAGLP--LTEEDIQKELDRRRPG--------YSR---GTTM--RIEPD--------EVEIL--- 61 (359)
T ss_pred EecCCCCeeEEEEcCCCCCCE--eCHHHHHHHHHccCCC--------CCC---CCCC--CCCCC--------ceEEe---
Confidence 488999999999999999985 4 46666666543210 000 0111 01122 33333
Q ss_pred CccccccccCCCceEEEEEeccCCcc-cccccccccCC-ceee-eecCCccccccccchhHHHH--HHHHHHHHHHHHHH
Q 013510 336 SGGIQGGISNGEIINMRIAFKPTSTI-GRKQNTVTREK-KETE-LIARGRHDPCVVPRAVPMVE--AMVALVLMDQLMAQ 410 (441)
Q Consensus 336 aGGI~GGISnG~pIv~rva~KPtpSI-~k~q~TVd~~~-~e~~-~~~~gRhDpCivpRA~pVvE--Am~AlvLaD~~L~~ 410 (441)
.|+-.|.|+|.||.+.+--|-+-|- +....++-.-+ -+-+ ..-+|-.|--..=|++-=-- =++|=++|..+|++
T Consensus 62 -SGv~~g~TtG~PI~~~I~N~d~~s~dy~~~~~~pRPGHAD~~~~~KYg~~d~~gggr~SaReTa~rVaaGaiAk~~L~~ 140 (359)
T PRK05382 62 -SGVFEGKTTGTPIALLIRNTDQRSKDYSEIKTRPRPGHADYTYFLKYGFRDYRGGGRSSARETAARVAAGAVAKKLLKE 140 (359)
T ss_pred -ecccCCCcCCCCeEEEEECCCCCCcchhhccCCCCCCccchhhHhhcCCcccCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 5888899999999998866322111 22222221111 0111 11235556555555442211 23455677788865
Q ss_pred hc
Q 013510 411 HA 412 (441)
Q Consensus 411 ~~ 412 (441)
++
T Consensus 141 ~g 142 (359)
T PRK05382 141 LG 142 (359)
T ss_pred CC
Confidence 44
No 16
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=48.93 E-value=33 Score=38.06 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCc---------------cccEEEEEEEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEeccc
Q 013510 244 AEKMIAAIDAVRVRGDS---------------VGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSG 306 (441)
Q Consensus 244 ~~~m~~~I~~ar~~GDS---------------lGGvve~~~~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGVEfG~G 306 (441)
-+++.+++.++++.|.. +.|...+=|.|||.-.| -++.+|+.|+-.=| +|| |-=|-|+.|
T Consensus 451 ~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~--~~~g~~~l~s~~~~p~g~p-v~~v~i~~~ 527 (577)
T PLN02948 451 PERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTS--HLDGLDSLLSIVQMPRGVP-VATVAIGNA 527 (577)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCC--CCCcHHHHHHHhcCCCCCe-EEEEecCCh
Confidence 34577788888887754 22333445678888766 57899999999999 999 888988888
Q ss_pred ccccc
Q 013510 307 FAGTF 311 (441)
Q Consensus 307 F~~a~ 311 (441)
|.++-
T Consensus 528 ~~aa~ 532 (577)
T PLN02948 528 TNAGL 532 (577)
T ss_pred HHHHH
Confidence 77654
No 17
>PRK12463 chorismate synthase; Reviewed
Probab=44.67 E-value=59 Score=34.84 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=46.0
Q ss_pred cCCccccEEEEEEEeCCCCcCCcc-cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCC
Q 013510 257 RGDSVGGVVTCIVRNCPRGLGSPV-FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNR 335 (441)
Q Consensus 257 ~GDSlGGvve~~~~gvP~GLG~p~-fdkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~ 335 (441)
.|.|-|-.+-|++.|+|+||= + .+.|+..|..---+ +|. ...+ ..-.| .+...
T Consensus 6 ~GESHG~~ig~VIdG~PaGl~--l~~e~I~~~L~RR~pG--------~~~---~~t~--r~E~D--------~v~il--- 59 (390)
T PRK12463 6 AGESHGPQLTVILEGVPAGLT--LAAEHINKELLRRQKG--------HGR---GRRM--QIETD--------TVEIV--- 59 (390)
T ss_pred cccCCCceeEEEEcCCCCCCc--cCHHHHHHHHhccCCC--------CCC---CCCC--CCCCC--------ceEEe---
Confidence 589999999999999999985 4 35566666543211 010 0111 11122 23332
Q ss_pred CccccccccCCCceEEEEE
Q 013510 336 SGGIQGGISNGEIINMRIA 354 (441)
Q Consensus 336 aGGI~GGISnG~pIv~rva 354 (441)
.|+-.|.|+|.||.+.+-
T Consensus 60 -SGv~~G~TtGtPI~~~I~ 77 (390)
T PRK12463 60 -SGVRHGMTLGSPITLIVK 77 (390)
T ss_pred -ecccCCCcCCCCeEEEEE
Confidence 688999999999999983
No 18
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=44.31 E-value=64 Score=30.47 Aligned_cols=86 Identities=22% Similarity=0.259 Sum_probs=54.3
Q ss_pred HHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCcc----------
Q 013510 192 AKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSV---------- 261 (441)
Q Consensus 192 Ak~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSl---------- 261 (441)
|.+.|++ |||...-+|.+.+.- -+++.+++++++++|..+
T Consensus 17 a~~~L~~-~gi~~dv~V~SaHRt-----------------------------p~~~~~~~~~a~~~g~~viIa~AG~aa~ 66 (156)
T TIGR01162 17 AADILEE-FGIPYELRVVSAHRT-----------------------------PELMLEYAKEAEERGIKVIIAGAGGAAH 66 (156)
T ss_pred HHHHHHH-cCCCeEEEEECcccC-----------------------------HHHHHHHHHHHHHCCCeEEEEeCCccch
Confidence 5677887 699966666555431 124556667777766421
Q ss_pred -----ccEEEEEEEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEeccccccc
Q 013510 262 -----GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGSGFAGT 310 (441)
Q Consensus 262 -----GGvve~~~~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGVEfG~GF~~a 310 (441)
.|...+=|.|||.-.+ .++.+|+.|+-.-| ++| |-=|-|+.||.++
T Consensus 67 Lpgvva~~t~~PVIgvP~~~~--~l~G~daLlS~vqmP~gvp-vatv~I~~~~nAa 119 (156)
T TIGR01162 67 LPGMVAALTPLPVIGVPVPSK--ALSGLDSLLSIVQMPSGVP-VATVAIGNAGNAA 119 (156)
T ss_pred hHHHHHhccCCCEEEecCCcc--CCCCHHHHHHHhcCCCCCe-eEEEEcCChhHHH
Confidence 1222233456666544 37889999998886 566 7778888776654
No 19
>TIGR02725 phenyl_P_gamma phenylphosphate carboxylase, gamma subunit. Members of this protein family are the gamma subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. The gamma subunit has no known homologs.
Probab=27.75 E-value=50 Score=27.54 Aligned_cols=45 Identities=27% Similarity=0.442 Sum_probs=42.0
Q ss_pred ccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEeccc
Q 013510 262 GGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSG 306 (441)
Q Consensus 262 GGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEfG~G 306 (441)
|--.|..++-+-+||-.+.|.++.++++.|+-..|.---|.||-|
T Consensus 17 gk~lelsvrtlnpglkkytyqrv~ae~s~aldkfpdqlqvr~grg 61 (84)
T TIGR02725 17 GKELELSVRTLNPGLKKYTYQRVKAELSNALDKFPDQLQVRFGRG 61 (84)
T ss_pred CceEEEEEeecCccHHHHHHHHHHHHhhhhhhhCcHhheeeeccC
Confidence 556799999999999999999999999999999999999999987
No 20
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=25.96 E-value=86 Score=33.30 Aligned_cols=79 Identities=8% Similarity=0.035 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCeEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEE
Q 013510 189 GAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCI 268 (441)
Q Consensus 189 GaIAk~lL~~~~GI~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~ 268 (441)
..+.++|+++ |+.|.+-|..-+++... .......+.+.+.||.-++++..++.++.|++|. .|+
T Consensus 280 ~~~~~~L~~~--g~~v~~g~l~~~d~d~~----~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~----------~vi 343 (402)
T PRK09536 280 ARAVSRLVAA--GASVSVGPVPEGDTAAE----TAARVGCEAVTVPPFKPIEDSTRAEATDLIIAAD----------AVV 343 (402)
T ss_pred HHHHHHHHHC--CCeEEEecCcCcchhHH----HHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCC----------EEE
Confidence 4467777764 99998888766665321 0112223456778899999999999999998875 477
Q ss_pred EEeCCCCcCCcccCc
Q 013510 269 VRNCPRGLGSPVFDK 283 (441)
Q Consensus 269 ~~gvP~GLG~p~fdk 283 (441)
..|+|.|-++++-..
T Consensus 344 ~~~~~~g~~~~~~~~ 358 (402)
T PRK09536 344 AAGVAAAARSGVIGL 358 (402)
T ss_pred ECCCccCCCCCchhe
Confidence 889999999887544
No 21
>COG0250 NusG Transcription antiterminator [Transcription]
Probab=23.37 E-value=1.9e+02 Score=27.52 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=37.7
Q ss_pred eeeEEeecC-CCCccCCHHHHHHHhhhcCCCC--CCCCCCCCCCCeEEEEecccCCc
Q 013510 73 GVGCIIDGC-PPRIPLSEADMQVDLDRRRPGQ--SRITTPRKETDTCKIYSGVSEGV 126 (441)
Q Consensus 73 aig~VIdG~-PaGl~i~~e~I~~eL~RRrpG~--~r~~t~R~E~D~v~IlSGv~~G~ 126 (441)
++...+-+. +--.+|+.++++..|.+-+... -+....=.+.|.|+|++|-|.|.
T Consensus 84 gV~GfVg~~~~~P~pi~~~ei~~~l~~~~~~~~~~~~~~~~e~Gd~VrI~~GpFa~f 140 (178)
T COG0250 84 GVTGFVGSGGAKPVPLSEEEIEHILGFLEEEVAPKKPKVDFEPGDVVRIIDGPFAGF 140 (178)
T ss_pred CcEEEeccCCCCCcccCHHHHHHHHhhccccccCCcccccCCCCCEEEEeccCCCCc
Confidence 455555554 6778999999999666555431 12334456799999999999873
No 22
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=20.42 E-value=87 Score=19.86 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=14.4
Q ss_pred CCCCeEEEEecccCCc
Q 013510 111 KETDTCKIYSGVSEGV 126 (441)
Q Consensus 111 ~E~D~v~IlSGv~~G~ 126 (441)
.+.|.|+|++|-+.|+
T Consensus 3 ~~G~~V~I~~G~~~g~ 18 (28)
T smart00739 3 EVGDTVRVIAGPFKGK 18 (28)
T ss_pred CCCCEEEEeECCCCCc
Confidence 4789999999999987
No 23
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=20.01 E-value=1.8e+02 Score=24.69 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEe
Q 013510 243 YAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEV 303 (441)
Q Consensus 243 ~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEf 303 (441)
..+.+.+.|+.+|++++- -|--.+.|.|--.|.| |-++|+.|+-.=-++=||.|
T Consensus 19 C~~~V~~qI~yvk~~~~~-~GpK~VLViGaStGyG------LAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 19 CARNVENQIEYVKSQGKI-NGPKKVLVIGASTGYG------LASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp HHHHHHHHHHHHHHC----TS-SEEEEES-SSHHH------HHHHHHHHHCC--EEEEEE-
T ss_pred HHHHHHHHHHHHHhcCCC-CCCceEEEEecCCccc------HHHHHHHHhcCCCCEEEEee
Confidence 367788889999997776 6666799999999999 99999999733333444443
Done!