Query 013510
Match_columns 441
No_of_seqs 195 out of 1048
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 11:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r53_A Chorismate synthase; tw 100.0 7E-153 2E-157 1152.8 24.6 364 54-417 1-372 (382)
2 1um0_A Chorismate synthase; be 100.0 7E-151 2E-155 1130.0 32.6 357 54-424 1-363 (365)
3 1sq1_A Chorismate synthase; st 100.0 5E-151 2E-155 1133.6 26.9 360 54-424 1-360 (370)
4 4ecd_A Chorismate synthase; 4- 100.0 6E-151 2E-155 1144.3 26.7 367 59-425 3-388 (398)
5 1qxo_A Chorismate synthase; be 100.0 2E-149 6E-154 1130.7 29.4 363 61-425 1-380 (388)
6 2o11_A Chorismate synthase; sh 100.0 8E-149 3E-153 1130.4 27.7 364 60-425 1-384 (407)
7 1q1l_A Chorismate synthase; be 100.0 1E-147 4E-152 1120.1 29.4 365 60-425 8-393 (401)
8 2k1h_A Uncharacterized protein 75.4 1.3 4.4E-05 37.0 2.1 28 285-312 38-65 (94)
9 1pqx_A Conserved hypothetical 74.8 1.2 4E-05 37.0 1.7 29 284-312 37-65 (91)
10 2ltm_A NFU1 iron-sulfur cluste 72.6 0.94 3.2E-05 38.8 0.0 29 284-312 47-75 (107)
11 1q1l_A Chorismate synthase; be 68.1 4 0.00014 42.1 4.2 77 63-139 220-324 (401)
12 2o11_A Chorismate synthase; sh 63.0 2.1 7.3E-05 44.2 1.1 76 64-139 213-315 (407)
13 1qxo_A Chorismate synthase; be 62.4 4.8 0.00016 41.4 3.5 77 64-140 208-312 (388)
14 1sq1_A Chorismate synthase; st 55.2 10 0.00036 38.7 4.5 68 63-139 196-293 (370)
15 2ltl_A NIFU-like protein, mito 56.7 3.2 0.00011 36.1 0.0 28 285-312 60-88 (119)
16 1o4v_A Phosphoribosylaminoimid 42.7 26 0.0009 32.5 4.7 60 246-311 56-135 (183)
17 1r53_A Chorismate synthase; tw 38.3 34 0.0012 35.1 5.2 76 63-139 208-311 (382)
18 3lp6_A Phosphoribosylaminoimid 31.6 61 0.0021 29.8 5.3 61 245-311 49-129 (174)
19 2zqe_A MUTS2 protein; alpha/be 22.0 2.9E+02 0.0099 21.7 7.2 55 240-305 14-68 (83)
20 1zla_K Latent nuclear antigen; 21.0 27 0.00093 22.5 0.6 12 122-133 8-19 (26)
No 1
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=100.00 E-value=7.1e-153 Score=1152.80 Aligned_cols=364 Identities=54% Similarity=0.866 Sum_probs=266.3
Q ss_pred ccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013510 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (441)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa 133 (441)
+||||++|||||||||||++||||||||||||+||+||||.||+||||||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (382)
T 1r53_A 1 MSTFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKDRVEIQSGTEFGKTLGTPIA 80 (382)
T ss_dssp CCEECSSSEEEEECCTTSSEEEEEEECCCTTCBCCGGGTHHHHHTTCC------------CCCEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 013510 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (441)
Q Consensus 134 ~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~ 213 (441)
++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++.+||+|.|||++||+
T Consensus 81 ~~I~N~D~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~~~GI~i~a~v~~iG~ 160 (382)
T 1r53_A 81 MMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGGGRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGE 160 (382)
T ss_dssp EEEEC-----------------------------------------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhccCCCCCCccchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998669999999999999
Q ss_pred eecCCCCC------CcccccHhhhhcCc-CCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHH
Q 013510 214 VVLPEDVV------DHEMLTLDQVESNI-VRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEA 286 (441)
Q Consensus 214 i~~~~~~~------~~~~~~~~~~~~~~-vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda 286 (441)
|+...... .....+++++++|+ |||||++++++|+++|+++|++||||||+|||+|+|||+|||||+|||||+
T Consensus 161 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvfdkLda 240 (382)
T 1r53_A 161 IKMNRDSFDPEFQHLLNTITREKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEA 240 (382)
T ss_dssp EECCCCTTCHHHHHHHHHCCHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHTTCCCCEEEEEEEESCCTTCSBTTTBCHHH
T ss_pred EecccccccccccccccccCHHHHhcCCCccCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcccccchH
Confidence 98642100 00134578899999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCcccEEEecccccccccCCCccccceeecCC-CceeeccCCCccccccccCCCceEEEEEeccCCcccccc
Q 013510 287 ELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQ 365 (441)
Q Consensus 287 ~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~-g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q 365 (441)
+||+||||||||||||||+||++++|+|||+||+|+..++ |+++|+|||+|||+|||||||||+||+||||||||++||
T Consensus 241 ~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q 320 (382)
T 1r53_A 241 MLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNGENIYFSVPFKSVATISQEQ 320 (382)
T ss_dssp HHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CBCCCCSCSEETTEECSSCEEEEEEECCC-------
T ss_pred HHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceeecCcCccCccccccCCCeEEEEEEECCcccccccc
Confidence 9999999999999999999999999999999999974321 579999999999999999999999999999999999999
Q ss_pred cccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCcc
Q 013510 366 NTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLF 417 (441)
Q Consensus 366 ~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~ 417 (441)
+|||+++++++++++||||||++|||+||+|||+||||||++|++++++...
T Consensus 321 ~TVd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~~~~ 372 (382)
T 1r53_A 321 KTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADALLIQKARDFSR 372 (382)
T ss_dssp ----------------CCCSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccccccCcchhhccCCCCcccccchHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 9999999999999999999999999999999999999999999999876543
No 2
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=100.00 E-value=6.9e-151 Score=1129.98 Aligned_cols=357 Identities=39% Similarity=0.606 Sum_probs=342.9
Q ss_pred ccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013510 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (441)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa 133 (441)
+||||++|||||||||||++||||||||||||+||+++||.||+||||||++++|||+|.|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 80 (365)
T 1um0_A 1 MNTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDDKVEITSGVFEDFSTGTPIG 80 (365)
T ss_dssp CCEECSSSEEEECCSCCSSEEEEEEECCCBTCBCCHHHHHHHHHHHTTCCSSCCCHHHHSCEEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 013510 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (441)
Q Consensus 134 ~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~ 213 (441)
++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 81 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~rVAaGAiAk~~L~~-~gI~i~~~v~~iG~ 159 (365)
T 1um0_A 81 FLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGGGRSSARESAIRVAAGAFAKMLLRE-IGIVCESGIIEIGG 159 (365)
T ss_dssp EEEECCCSCCCCCCCCTTBCCTTSTHHHHHHHHCCCCCCCTTCSTHHHHHHHHHHHHHHHHHHHH-TTEEEEEEEEEETT
T ss_pred EEEEcCCCCCCchhhccCCCCCCCcchhhHhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 59999999999999
Q ss_pred eecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEe------CCCCcCCcccCchHHH
Q 013510 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRN------CPRGLGSPVFDKLEAE 287 (441)
Q Consensus 214 i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~g------vP~GLG~p~fdkLda~ 287 (441)
|+.. ..+|+++++|+|||||++++++|+++|+++|++||||||+|||+++| ||+|||+|+|||||++
T Consensus 160 i~~~-------~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~gDSiGGvve~v~~g~~~~~~vP~GLG~pvfdkLda~ 232 (365)
T 1um0_A 160 IKAK-------NYDFNHALKSEIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAK 232 (365)
T ss_dssp EECS-------SCCHHHHHHSTTCBSCHHHHHHHHHHHHHHHHTTCCBCEEEEEEEEESSTTCCCCSCCSBTTTBCHHHH
T ss_pred EecC-------cCCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcccccCcCCCCCCCcccccchHH
Confidence 9863 23478899999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccc
Q 013510 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNT 367 (441)
Q Consensus 288 LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~T 367 (441)
||+||||||||||||||+||++++|+|||+||+|+ + +| ++|||+|||+|||||||||+||+||||||||++||+|
T Consensus 233 LA~A~msI~AvKGvEiG~GF~~a~~~GSe~nD~~~-~-~g---~~tN~aGGi~GGISnG~pIv~r~a~KPt~SI~~~q~T 307 (365)
T 1um0_A 233 IAEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMD-Q-KG---FLSNRSGGVLGGMSNGEEIIVRVHFKPTPSIFQPQRT 307 (365)
T ss_dssp HHHHHHTSTTEEEEEETTGGGGGGSBHHHHCCCEE-T-TE---ESCCTTTTEETTEECSSCEEEEEEECCCSCCSSCEEE
T ss_pred HHHHhcCccceeeEEeccchhhhhcccccccchhc-c-CC---CcccCccCccccccCCCcEEEEEEECCCccccccccc
Confidence 99999999999999999999999999999999997 3 33 4999999999999999999999999999999999999
Q ss_pred cccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhc
Q 013510 368 VTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 424 (441)
Q Consensus 368 Vd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~ 424 (441)
||++++++++.++||||||++|||+||+|||+||||||++|++++++ +..++..|+
T Consensus 308 Vd~~~~~~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~~~~~~-~~~~~~~~~ 363 (365)
T 1um0_A 308 IDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVLLNLTSK-IEYLKTIYN 363 (365)
T ss_dssp EBTTSCEEEECCCSCCCSCTHHHHHHHHHHHHHHHHHHHHHHGGGSB-HHHHHHHHT
T ss_pred eecCCCEeeeccCCCCCcccccccHHHHHHHHHHHHHHHHHHHhhhh-ccccccccc
Confidence 99999999999999999999999999999999999999999999976 455554443
No 3
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=100.00 E-value=5e-151 Score=1133.63 Aligned_cols=360 Identities=40% Similarity=0.624 Sum_probs=272.6
Q ss_pred ccccccceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEE
Q 013510 54 GSAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIH 133 (441)
Q Consensus 54 ~ntfG~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa 133 (441)
+||||++|||||||||||++||||||||||||+||+||||.||+||| ||++++|||+|+|+|+||||||+|+||||||+
T Consensus 1 gntfG~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRr-G~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~ 79 (370)
T 1sq1_A 1 MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESDKAQVLSGVFEGYTTGHPIA 79 (370)
T ss_dssp CCEECSSSEEEEECCGGGSCEEEEEECCCSSCBCCHHHHHHHHHHTT-C-----------CCEEECSSEETTEECSSCEE
T ss_pred CCcCcceeEEEeeccCCCCeeEEEEecCCCCCccCHHHHHHHHHHhc-CCCCCCCCCCCCCeeEEeecccCCEeCCCCeE
Confidence 48999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCccccccCCCCCcccccccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEEEEEeec
Q 013510 134 VFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHN 213 (441)
Q Consensus 134 ~~I~N~D~~s~dY~~~~~~pRPGHAD~t~~~KYg~rD~rGGgRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~v~~IG~ 213 (441)
++|+|+||+|+||+++++.||||||||||++|||+|||||||||||||||+||||||||||||++ +||+|.|||++||+
T Consensus 80 ~~I~N~d~~s~dy~~~~~~~RPGHAD~t~~~KYG~rD~RgggRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~v~~iG~ 158 (370)
T 1sq1_A 80 IVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLRE-FDICVQSGVFGVGT 158 (370)
T ss_dssp EEEC----------------------------------------CCCTHHHHHHHHHHHHHHHHT-TTCEEEEEEEEETT
T ss_pred EEEecCCCCCCchhhhcCCCCCCCcchhhhhhcCCccccCcchhhHHHHHHHHHHHHHHHHHHHH-CCcEEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred eecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhc
Q 013510 214 VVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM 293 (441)
Q Consensus 214 i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~alm 293 (441)
|+... +....+|+++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+|||||++||+|||
T Consensus 159 i~~~~---~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~~k~~gDS~GGvve~v~~gvP~GLG~pvfdkLda~LA~Alm 235 (370)
T 1sq1_A 159 FVSNL---KEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALM 235 (370)
T ss_dssp EECCS---CGGGSCHHHHHHSTTCBSCTTTHHHHHHHHHHHHHTTCCCCEEEEEEEESCCBSCSBTTTBCHHHHHHHHHH
T ss_pred EecCC---CcCccCHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEcCCCCCCCcccccchHHHHHHhc
Confidence 98642 123455888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccccccccccCCc
Q 013510 294 SLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKK 373 (441)
Q Consensus 294 SIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k~q~TVd~~~~ 373 (441)
|||||||||||+||++++|+|||+||+| + +|++ +|||+|||+|||||||||+||+||||||||++||+|||++++
T Consensus 236 SI~AvKGvEiG~GF~~a~~~GSe~nD~~--~-~g~~--~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~~q~TVd~~~~ 310 (370)
T 1sq1_A 236 GINAVKAVEIGEGINASKMRGSCNNDAL--K-DGKF--LSNHSGGILGGISNGENLILKTYFKPTPSIFAKQESIDKFGN 310 (370)
T ss_dssp TSTTEEEEEETTGGGGGGSCHHHHCCCC--S-SSSC--SCCTTCSEETTEEBSSCEEEEEEECCCC--------------
T ss_pred CccceeEEEeccchhhhhcccccccccc--c-CCcc--ccccCCCccccccCCCcEEEEEEecCCccccccccceecCCC
Confidence 9999999999999999999999999999 3 3544 999999999999999999999999999999999999999999
Q ss_pred eeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhc
Q 013510 374 ETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQ 424 (441)
Q Consensus 374 e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~ 424 (441)
++++.++||||||++|||+||+|||+||||||++|++++++ +..++..|.
T Consensus 311 ~~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~~-~~~~~~~~~ 360 (370)
T 1sq1_A 311 NLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLLNASAN-LNNLKNAYG 360 (370)
T ss_dssp -------CCSCSCTHHHHHHHHHHHHHHHHHHHHHHTGGGS-HHHHHHHTC
T ss_pred EeeeccCCCCCceeecccHHHHHHHHHHHHHHHHHHHhhhh-hhccchhhe
Confidence 99999999999999999999999999999999999998876 566655554
No 4
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=100.00 E-value=6.4e-151 Score=1144.26 Aligned_cols=367 Identities=34% Similarity=0.473 Sum_probs=257.1
Q ss_pred cceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeC
Q 013510 59 TYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPN 138 (441)
Q Consensus 59 ~~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N 138 (441)
++|||||||||||++||||||||||||+||+|+||.||+||||||++++|||+|.|+|+||||||+|+||||||+++|+|
T Consensus 3 ~~fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~l~I~N 82 (398)
T 4ecd_A 3 AMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVRLLTGVRHGLTLGSPVAIEIAN 82 (398)
T ss_dssp CCCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHTTCCCBCC------CCCEEEEESEETTEECSSCEEEEEEC
T ss_pred ceEEEEeeecCCCCeeEEEEccCCCCCccCHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcccCCCcCCCCeEEEEEc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC---------CCcccc-------ccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 013510 139 TDQRG---------HDYSEM-------SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (441)
Q Consensus 139 ~D~~s---------~dY~~~-------~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~lL~~~~G 201 (441)
+||+| .||+++ ++.||||||||||++|||++||||| |||||||||+||||||||||||++.+|
T Consensus 83 ~d~~~w~~~m~~~s~dy~~~~~~~~~~~~~pRPGHAD~t~~~KYG~~D~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 162 (398)
T 4ecd_A 83 TEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLTGMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFG 162 (398)
T ss_dssp ----------------------------------------------------------CCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCccchhhhccCCccChhhhhhhcccccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99986 599998 6899999999999999999999999 999999999999999999999998459
Q ss_pred eEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCccc
Q 013510 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF 281 (441)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~f 281 (441)
|+|.|||++||+|+++....+....+++++++|+|||||++++++|+++|++||++||||||+|||+|+|||+|||||+|
T Consensus 163 I~i~s~v~~iG~i~~~~~~~~~~~~~~~~~~~~~~rc~d~~~~~~m~~~I~~ak~~gDS~GGvve~v~~gvP~GLG~pvf 242 (398)
T 4ecd_A 163 IRTVAHVVALGGVQTNPDLPLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYVE 242 (398)
T ss_dssp CEEEEEEEEETTEECCSSSCCCCGGGHHHHHHSTTSCSCHHHHHHHHHHHHTC--CGGGCCEEEEEEEESCCSCCBCSSS
T ss_pred eEEEEEEEEEcCEEcccccCCCCHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEEcCCCCCCCCcc
Confidence 99999999999998753211234566788999999999999999999999999999999999999999999999999999
Q ss_pred --CchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCC
Q 013510 282 --DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (441)
Q Consensus 282 --dkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (441)
||||++||+||||||||||||||+||++++|+|||+||+|+++++|.++|+|||+|||+|||||||||+||+||||||
T Consensus 243 ~d~kLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 322 (398)
T 4ecd_A 243 SDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGGIEGGMSNGQVIRVRGAMKPIP 322 (398)
T ss_dssp STTSHHHHHHHHHHTSTTEEEEEETTTTTC-------------------------CCCSEETTEECSSCEEEEEEECC--
T ss_pred cccChhHHHHHHhcCcCceeeEEecchHhhhhccccccccceeecCCCceeecccCCcCccccccCCCcEEEEEEecCcc
Confidence 999999999999999999999999999999999999999997654569999999999999999999999999999999
Q ss_pred cccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcC
Q 013510 360 TIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425 (441)
Q Consensus 360 SI~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 425 (441)
||++||+|||++++|.+...+||||||++|||+||+|||+||||||++|++|++|+++|++++|+.
T Consensus 323 SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLad~~L~~~g~d~~~e~~~~~~~ 388 (398)
T 4ecd_A 323 SIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAMVRLTLAKYALDKFGGDSVAETRRNLES 388 (398)
T ss_dssp -----------------------CCBCSHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHH
T ss_pred cccccccceecCCCCeeeccCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999999988888889999999999999999999999999999999999999999998865
No 5
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=100.00 E-value=1.9e-149 Score=1130.65 Aligned_cols=363 Identities=34% Similarity=0.466 Sum_probs=346.5
Q ss_pred eEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCCC
Q 013510 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 61 ~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~D 140 (441)
|||||||||||++||||||||||||+||+++||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+|
T Consensus 1 fr~tT~GESHG~alg~vIdG~PaGl~l~~~dIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N~d 80 (388)
T 1qxo_A 1 MRYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSGVRHGKTTGAPITMDVINKD 80 (388)
T ss_dssp CEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHCSTTCCTHHHHCCCCCEEEESEETTEECSSCEEEEEECGG
T ss_pred CeEeecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCcCCCCCCeeEEeecccCCccCCCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC---------CCCcc-cc---ccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEEEE
Q 013510 141 QR---------GHDYS-EM---SVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILA 206 (441)
Q Consensus 141 ~~---------s~dY~-~~---~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s 206 (441)
|+ |+||+ ++ ++.||||||||||++|||+|||||| |||||||||+||||||||||||++ +||+|.|
T Consensus 81 ~~~w~~~ms~~s~dy~~~~~~~~~~~RPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a 159 (388)
T 1qxo_A 81 HQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRFDDLRNSLERSSARETTMRVAVGAVAKRLLAE-LDMEIAN 159 (388)
T ss_dssp GGGGTTTTCSSCCCGGGTTTTCCCSCCTTSSHHHHHHHHTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHH-TTCEEEE
T ss_pred hhhhhhhcccCCccchhhhhcccCCCCCCccchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHh-CCcEEEE
Confidence 99 88999 55 6899999999999999999999999 999999999999999999999999 7999999
Q ss_pred EEEEeeceecCCCCCCccccc-HhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCccc--Cc
Q 013510 207 YVSQAHNVVLPEDVVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DK 283 (441)
Q Consensus 207 ~v~~IG~i~~~~~~~~~~~~~-~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~f--dk 283 (441)
||++||+|+.... ......+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+| ||
T Consensus 160 ~v~~iG~i~~~~~-~~~~~~~~~~~~~~~~~~cpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pvf~d~k 238 (388)
T 1qxo_A 160 HVVVFGGKEIDVP-ENLTVAEIKQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRK 238 (388)
T ss_dssp EEEEETTEECCCC-SSCCHHHHHHHHHTSTTCCSCGGGHHHHHHHHHHHHHTTCCBCEEEEEEEESCCTTCSCSSSGGGC
T ss_pred EEEEEeCEEcCcc-cccchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCcCCccccccc
Confidence 9999999986421 0011223 678999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCCcccc
Q 013510 284 LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTSTIGR 363 (441)
Q Consensus 284 Lda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtpSI~k 363 (441)
||++||+||||||||||||||+||++++|+|||+||+|+++++++++++|||+|||+|||||||||+||+||||||||++
T Consensus 239 Lda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~tN~aGGI~GGISnG~pIv~r~a~KPt~SI~~ 318 (388)
T 1qxo_A 239 LDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTNGQPIVVRGVMKPIPTLYK 318 (388)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCCSCCSS
T ss_pred chHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999876544699999999999999999999999999999999999
Q ss_pred cccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcC
Q 013510 364 KQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425 (441)
Q Consensus 364 ~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 425 (441)
||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 319 ~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvlaD~~L~~~~~d~~~e~~~~~~~ 380 (388)
T 1qxo_A 319 PLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQEILEKFSSDNLEELKEAVAK 380 (388)
T ss_dssp CEEEECTTTCCEEEECCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHSCCSBHHHHHHHHHH
T ss_pred cccceecCCCEeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998864
No 6
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=100.00 E-value=8.3e-149 Score=1130.38 Aligned_cols=364 Identities=35% Similarity=0.499 Sum_probs=336.7
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCC
Q 013510 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 60 ~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~ 139 (441)
||||||||||||++||||||||||||+||+|+||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+
T Consensus 1 mfr~tT~GESHG~alg~VIdG~PaGl~l~~edIq~eL~RRrpG~~r~~t~R~E~D~v~IlSGV~~G~TtGtPI~~~I~N~ 80 (407)
T 2o11_A 1 MLRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLSGIRHGSTLGGPIAIEIGNT 80 (407)
T ss_dssp CCEEEEECCTTSSEEEEEEESCCBTCBCCHHHHHHHHHHHTCCCC---------CCEEEEESEETTEECSSCEEEEEECT
T ss_pred CeEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC------CC---Ccc----ccc----cCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCC
Q 013510 140 DQR------GH---DYS----EMS----VAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAG 201 (441)
Q Consensus 140 D~~------s~---dY~----~~~----~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~lL~~~~G 201 (441)
||+ |+ ||+ +++ +.||||||||||++|||+|||||| |||||||||+||||||||||||++.+|
T Consensus 81 D~~~w~~~ms~~~~dy~~~~~~~~~~~~~~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~~~G 160 (407)
T 2o11_A 81 EWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGMLKYGFDDARPVLERASARETAARVAAGTVARAFLRQALG 160 (407)
T ss_dssp THHHHTTTTCSSCCCHHHHHTCGGGCCCCSCCTTSSHHHHHHHHTCSSSHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhhhhcccccccCcchhhhhhhhcccCCCCCCccchhhHhhcCCcccCCccccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999 55 898 555 799999999999999999999999 999999999999999999999988459
Q ss_pred eEEEEEEEEeeceecCCCCCCcccccHhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcc-
Q 013510 202 TEILAYVSQAHNVVLPEDVVDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV- 280 (441)
Q Consensus 202 I~I~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~- 280 (441)
|+|.|||++||+|+....+. ....+++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|+
T Consensus 161 I~i~a~v~~iG~i~~~~~~~-~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv~ 239 (407)
T 2o11_A 161 VEVLSHVISIGASAPYEGPP-PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTS 239 (407)
T ss_dssp CEEEEEEEEETTCCCCCSCC-CCGGGHHHHHHSTTCCSSHHHHHHHHHHHHHHHHHTCCCCEEEEEEEESCCTTCSCSSS
T ss_pred cEEEEEEEEEeCEEcccccc-cchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCCCCcc
Confidence 99999999999998642000 0234578899999999999999999999999999999999999999999999999999
Q ss_pred -cCchHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccCC
Q 013510 281 -FDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPTS 359 (441)
Q Consensus 281 -fdkLda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPtp 359 (441)
|||||++||+||||||||||||||+||++++|+|||+||+|+++++| ++|+|||+|||+|||||||||+||+||||||
T Consensus 240 ~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g-~~~~TN~aGGI~GGISnG~pIv~r~a~KPt~ 318 (407)
T 2o11_A 240 GDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNRAGGLEGGMTNGQPLRVRAAMKPIS 318 (407)
T ss_dssp GGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTS-CBCSCCTTTTEETTEECSSCEEEEEEECCCS
T ss_pred cccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCC-ceecCcCccCcccccCCCCcEEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999875444 9999999999999999999999999999999
Q ss_pred cccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcC
Q 013510 360 TIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425 (441)
Q Consensus 360 SI~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 425 (441)
||++||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 319 SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~ 384 (407)
T 2o11_A 319 TVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVALVLARAALEKFGGDSLAETQRNIAA 384 (407)
T ss_dssp CCTTTCEEECTTTCCEEECCCSCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHH
T ss_pred cccccccceecCCCeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888764
No 7
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=100.00 E-value=1.2e-147 Score=1120.14 Aligned_cols=365 Identities=36% Similarity=0.530 Sum_probs=298.3
Q ss_pred ceEEeeeecccCCeeeEEeecCCCCccCCHHHHHHHhhhcCCCCCCCCCCCCCCCeEEEEecccCCcccCCcEEEEEeCC
Q 013510 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 60 ~~r~ttfGESHG~aig~VIdG~PaGl~i~~e~I~~eL~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGaPIa~~I~N~ 139 (441)
+|||||||||||++||||||||||||+||+|+||.||+||||||++++|||+|+|+|+||||||+|+||||||+++|+|+
T Consensus 8 ~fr~tT~GESHG~alg~vIdG~PaGl~l~~edIq~~L~RRrpG~~r~~t~R~E~D~v~IlSGv~~G~TtGtPI~~~I~N~ 87 (401)
T 1q1l_A 8 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEILSGVRFGKTLGSPIALFIRNR 87 (401)
T ss_dssp SCEEEEECCTTSSEEEEEEECCCBTCBCCHHHHHHHHHHHHTTCC------CCSCCEEEEESEETTEECSSCEEEEEECS
T ss_pred eEEEEecccCCCCeeEEEEecCCCCCccCHHHHHHHHHhhCCCCCCCCCCCCCCCeeEEeecccCCccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----------ccccccCCCCCcccccccccccCCCCCCC-chhhHHHHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 013510 140 DQRGHD-----------YSEMSVAYRPSHADATYDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAY 207 (441)
Q Consensus 140 D~~s~d-----------Y~~~~~~pRPGHAD~t~~~KYg~rD~rGG-gRsSaReTa~rVaAGaIAk~lL~~~~GI~I~s~ 207 (441)
||.+|. |....+.||||||||||++|||+|||||| |||||||||+||||||||||||++ +||+|.||
T Consensus 88 Dy~~~~~~m~~~~~~~~~~~~~t~pRPGHAD~t~~~KYG~rD~RgglgRsSaRETa~RVAaGAiAk~~L~~-~GI~i~a~ 166 (401)
T 1q1l_A 88 DWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQRDLRNILERASARETAARVAVGAVCKKFLSE-FGIKIGSF 166 (401)
T ss_dssp CC-------------------------------CTTTTTCSSTHHHHHHHSGGGHHHHHHHHHHHHHHHHT-TTCEEEEE
T ss_pred CHHHHHhhccccccccccccccCCCCCCCcchhhhhhcCCccccCccccchHHHHHHHHHHHHHHHHHHHH-CCeEEEEE
Confidence 766531 11122349999999999999999999999 999999999999999999999999 79999999
Q ss_pred EEEeeceecCCC------CCCccccc-HhhhhcCcCCCCCHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCc-
Q 013510 208 VSQAHNVVLPED------VVDHEMLT-LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSP- 279 (441)
Q Consensus 208 v~~IG~i~~~~~------~~~~~~~~-~~~~~~~~vrc~d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p- 279 (441)
|++||+|+.... +.+....+ ++++++|+|||||++++++|+++|+++|++||||||+|||+|+|||+|||+|
T Consensus 167 v~~iG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rcpd~~~~~~m~~~I~~ak~~GDS~GGvvevv~~gvP~GLG~pv 246 (401)
T 1q1l_A 167 VVSIGQKEVEELKDKSYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHI 246 (401)
T ss_dssp EEEETTEECGGGSSGGGGGCHHHHHHHHHHHTTSTTCCSCGGGHHHHHHHHHHHHTTTCCBCEEEEEEEESCCTTCSCSS
T ss_pred EEEEcCEEcccccccccccCCCchhhHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEecCCCCCCCcc
Confidence 999999986310 00001223 6788999999999999999999999999999999999999999999999999
Q ss_pred ccCc-hHHHHHHHhccCCcccEEEecccccccccCCCccccceeecCCCceeeccCCCccccccccCCCceEEEEEeccC
Q 013510 280 VFDK-LEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIAFKPT 358 (441)
Q Consensus 280 ~fdk-Lda~LA~almSIpAVKGVEfG~GF~~a~~~GSe~nD~~~~~~~g~i~~~TN~aGGI~GGISnG~pIv~rva~KPt 358 (441)
+||| ||++||+||||||||||||||+||++++++|||+||+|+++++++++|+|||+|||+|||||||||+||+|||||
T Consensus 247 ~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~TN~aGGI~GGISnG~pIv~r~a~KPt 326 (401)
T 1q1l_A 247 QWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGGTEGGITNGMPIVVRVAMKPI 326 (401)
T ss_dssp SGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEESCCTTTTEETTEECSSCEEEEEEECCC
T ss_pred cccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeecCcCccCcccccCCCCcEEEEEEeCCC
Confidence 7998 999999999999999999999999999999999999998765457999999999999999999999999999999
Q ss_pred CcccccccccccCCceeeeecCCccccccccchhHHHHHHHHHHHHHHHHHHhcccCccccchhhcC
Q 013510 359 STIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425 (441)
Q Consensus 359 pSI~k~q~TVd~~~~e~~~~~~gRhDpCivpRA~pVvEAm~AlvLaD~~L~~~~~~~~~~~~~~~~~ 425 (441)
|||++||+|||+++++.+++++||||||++|||+||+|||+||||||++|+++++|+++|++++|+.
T Consensus 327 ~SI~~~q~TVd~~~~e~~~~~~gRhDpCvvprA~pV~EAm~AlvLaD~~L~~~~~d~~~e~~~~~~~ 393 (401)
T 1q1l_A 327 PTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAMLAIVLADALLEKLGGDFMEEVKKRFED 393 (401)
T ss_dssp CC------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCSBHHHHHHHHHH
T ss_pred ccccccccceecCCCeeeeecCCCCCcccccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998864
No 8
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=75.40 E-value=1.3 Score=37.02 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=23.7
Q ss_pred HHHHHHHhccCCcccEEEeccccccccc
Q 013510 285 EAELAKAMMSLPATKGFEVGSGFAGTFL 312 (441)
Q Consensus 285 da~LA~almSIpAVKGVEfG~GF~~a~~ 312 (441)
.+-||+.||.||.||+|-||.-|=....
T Consensus 38 ~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (94)
T 2k1h_A 38 QPEFINRLFEIEGVKSIFYVLDFISIDK 65 (94)
T ss_dssp SCHHHHHHHTSTTEEEEEEETTEEEEEE
T ss_pred CCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 4679999999999999999987765544
No 9
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=74.81 E-value=1.2 Score=37.03 Aligned_cols=29 Identities=7% Similarity=0.036 Sum_probs=24.6
Q ss_pred hHHHHHHHhccCCcccEEEeccccccccc
Q 013510 284 LEAELAKAMMSLPATKGFEVGSGFAGTFL 312 (441)
Q Consensus 284 Lda~LA~almSIpAVKGVEfG~GF~~a~~ 312 (441)
..+-||+.||.||.||+|-||.=|=....
T Consensus 37 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 65 (91)
T 1pqx_A 37 SQPAFINDILKVEGVKSIFHVMDFISVDK 65 (91)
T ss_dssp SCCHHHHHHHHSTTEEEEEEETTEEEEEE
T ss_pred cCCHHHHHhhCCCCeeEEEEeCCEEEEec
Confidence 34779999999999999999988766554
No 10
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=72.62 E-value=0.94 Score=38.76 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=24.7
Q ss_pred hHHHHHHHhccCCcccEEEeccccccccc
Q 013510 284 LEAELAKAMMSLPATKGFEVGSGFAGTFL 312 (441)
Q Consensus 284 Lda~LA~almSIpAVKGVEfG~GF~~a~~ 312 (441)
..+-||+.||.||.||+|-||.-|=....
T Consensus 47 ~~SPLA~~LF~i~gVk~Vf~g~dFITVtK 75 (107)
T 2ltm_A 47 FRSPLARQLFRIEGVKSVFFGPDSITVTK 75 (107)
Confidence 45779999999999999999988866644
No 11
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=68.13 E-value=4 Score=42.09 Aligned_cols=77 Identities=25% Similarity=0.259 Sum_probs=49.5
Q ss_pred EeeeecccCCeeeEEeecCCCCccC--CHHH-HHHHhhh--------------------cCCCCCCCCCCCCCCC-eEEE
Q 013510 63 VTTFGESHGGGVGCIIDGCPPRIPL--SEAD-MQVDLDR--------------------RRPGQSRITTPRKETD-TCKI 118 (441)
Q Consensus 63 ~ttfGESHG~aig~VIdG~PaGl~i--~~e~-I~~eL~R--------------------RrpG~~r~~t~R~E~D-~v~I 118 (441)
.---|.|-|..|-||+.|||+||== ..|. |+.+|.. +++|.---.-...+.+ .+.-
T Consensus 220 ak~~GDS~GGvvevv~~gvP~GLG~pv~fdkrLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~ 299 (401)
T 1q1l_A 220 VKEKGESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFR 299 (401)
T ss_dssp HHTTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTCCCEEEETTTEEEE
T ss_pred HHHhCCCCceEEEEEEecCCCCCCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeee
Confidence 3346999999999999999999953 4677 7777653 3444211111100111 2211
Q ss_pred ----EecccCCcccCCcEEEEEeCC
Q 013510 119 ----YSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 119 ----lSGv~~G~TtGaPIa~~I~N~ 139 (441)
-.|+.-|.|+|.||-+.+-=+
T Consensus 300 ~TN~aGGI~GGISnG~pIv~r~a~K 324 (401)
T 1q1l_A 300 HSNNLGGTEGGITNGMPIVVRVAMK 324 (401)
T ss_dssp SCCTTTTEETTEECSSCEEEEEEEC
T ss_pred cCcCccCcccccCCCCcEEEEEEeC
Confidence 247789999999999987544
No 12
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=63.04 E-value=2.1 Score=44.16 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=48.6
Q ss_pred eeeecccCCeeeEEeecCCCCccCCH---HHHHHHhhh--------------------cCCCCCCCCCCCCCCCeE----
Q 013510 64 TTFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDR--------------------RRPGQSRITTPRKETDTC---- 116 (441)
Q Consensus 64 ttfGESHG~aig~VIdG~PaGl~i~~---e~I~~eL~R--------------------RrpG~~r~~t~R~E~D~v---- 116 (441)
---|.|-|..|-||+.|||+||==-. +.|+.+|.. +++|.---.-...+.+.+
T Consensus 213 k~~GDS~GGvvevv~~gvP~GLG~pv~~f~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~g~~~~T 292 (407)
T 2o11_A 213 KKDGDTLGGVVEAVALGLPVGLGSFTSGDHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDGVVRST 292 (407)
T ss_dssp HHHTCCCCEEEEEEEESCCTTCSCSSSGGGSHHHHHHHHHHTSTTEEEEEETTHHHHTTSCHHHHSCCCBCCTTSCBCSC
T ss_pred HhcCCCCceEEEEEEecCCCCCCCCcccccchhHHHHHHhcCcCceeeEEeccchhhhhccccccccceeecCCCceecC
Confidence 34699999999999999999996543 567777653 233311000000011111
Q ss_pred EEEecccCCcccCCcEEEEEeCC
Q 013510 117 KIYSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 117 ~IlSGv~~G~TtGaPIa~~I~N~ 139 (441)
.--.|+.-|.|+|.||-+.+-=+
T Consensus 293 N~aGGI~GGISnG~pIv~r~a~K 315 (407)
T 2o11_A 293 NRAGGLEGGMTNGQPLRVRAAMK 315 (407)
T ss_dssp CTTTTEETTEECSSCEEEEEEEC
T ss_pred cCccCcccccCCCCcEEEEEEeC
Confidence 11268889999999999987544
No 13
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=62.43 E-value=4.8 Score=41.36 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=48.3
Q ss_pred eeeecccCCeeeEEeecCCCCccCCH---HHHHHHhhh--------------------cCCCCCCCCCCCCCCC-eEEEE
Q 013510 64 TTFGESHGGGVGCIIDGCPPRIPLSE---ADMQVDLDR--------------------RRPGQSRITTPRKETD-TCKIY 119 (441)
Q Consensus 64 ttfGESHG~aig~VIdG~PaGl~i~~---e~I~~eL~R--------------------RrpG~~r~~t~R~E~D-~v~Il 119 (441)
---|.|-|..|-||+.|||+||==-. +.|+.+|.. +++|.---.-...+.+ .+.-.
T Consensus 208 k~~GDS~GGvvevv~~gvP~GLG~pvf~d~kLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~ 287 (388)
T 1qxo_A 208 KRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRR 287 (388)
T ss_dssp HHTTCCBCEEEEEEEESCCTTCSCSSSGGGCHHHHHHHHHHTSTTEEEEEETTGGGGGGSBGGGTSCCEEEETTTEEEES
T ss_pred HHhCCCCceEEEEEEecCCCCcCCcccccccchHHHHHHhcCcCceeEEEECcchhhhhccccccccceeecCCCCeeec
Confidence 34699999999999999999985432 347766653 3444211111110111 22222
Q ss_pred ----ecccCCcccCCcEEEEEeCCC
Q 013510 120 ----SGVSEGVTTGTPIHVFVPNTD 140 (441)
Q Consensus 120 ----SGv~~G~TtGaPIa~~I~N~D 140 (441)
.|+.-|.|+|.||-+.+-=+-
T Consensus 288 tN~aGGI~GGISnG~pIv~r~a~KP 312 (388)
T 1qxo_A 288 TNNLGGFEGGMTNGQPIVVRGVMKP 312 (388)
T ss_dssp CCTTTTEETTEECSSCEEEEEEECC
T ss_pred CcCccCcccccCCCCcEEEEEEeCC
Confidence 477899999999999875443
No 14
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=55.17 E-value=10 Score=38.67 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=46.4
Q ss_pred EeeeecccCCeeeEEeecCCCCc--cCCHHHHHHHhhh--------------------cCCCC--------CCCCCCCCC
Q 013510 63 VTTFGESHGGGVGCIIDGCPPRI--PLSEADMQVDLDR--------------------RRPGQ--------SRITTPRKE 112 (441)
Q Consensus 63 ~ttfGESHG~aig~VIdG~PaGl--~i~~e~I~~eL~R--------------------RrpG~--------~r~~t~R~E 112 (441)
.---|.|=|..|-||+.|||+|| ++ .+.|+.+|.. +++|. +++.|.+
T Consensus 196 ~k~~gDS~GGvve~v~~gvP~GLG~pv-fdkLda~LA~AlmSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~g~~~tN~-- 272 (370)
T 1sq1_A 196 ARNSKDSVGAAVFTKVSGMLIGLGEVL-YDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNH-- 272 (370)
T ss_dssp HHHTTCCCCEEEEEEEESCCBSCSBTT-TBCHHHHHHHHHHTSTTEEEEEETTGGGGGGSCHHHHCCCCSSSSCSCCT--
T ss_pred HHHhCCCCeEEEEEEEEcCCCCCCCcc-cccchHHHHHHhcCccceeEEEeccchhhhhcccccccccccCCcccccc--
Confidence 34469999999999999999999 33 3555555542 23331 1112222
Q ss_pred CCeEEEEecccCCcccCCcEEEEEeCC
Q 013510 113 TDTCKIYSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 113 ~D~v~IlSGv~~G~TtGaPIa~~I~N~ 139 (441)
-.|+.-|.|+|.||-+.+-=+
T Consensus 273 ------aGGI~GGISnG~pIv~r~a~K 293 (370)
T 1sq1_A 273 ------SGGILGGISNGENLILKTYFK 293 (370)
T ss_dssp ------TCSEETTEEBSSCEEEEEEEC
T ss_pred ------CCCccccccCCCcEEEEEEec
Confidence 268899999999999987544
No 15
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=56.69 E-value=3.2 Score=36.14 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.3
Q ss_pred HHHHHHHhc-cCCcccEEEeccccccccc
Q 013510 285 EAELAKAMM-SLPATKGFEVGSGFAGTFL 312 (441)
Q Consensus 285 da~LA~alm-SIpAVKGVEfG~GF~~a~~ 312 (441)
.+-||++|| .|+.||+|-||.-|=....
T Consensus 60 ~SPLA~~LF~~i~GV~~Vf~g~DFITVtK 88 (119)
T 2ltl_A 60 HSKLAQQIFLQCPGVESLMIGDDFLTINK 88 (119)
Confidence 466999999 9999999999998866655
No 16
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=42.66 E-value=26 Score=32.52 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCccccEEEEE------------------EEeCCCCcCCcccCchHHHHHHHhc--cCCcccEEEecc
Q 013510 246 KMIAAIDAVRVRGDSVGGVVTCI------------------VRNCPRGLGSPVFDKLEAELAKAMM--SLPATKGFEVGS 305 (441)
Q Consensus 246 ~m~~~I~~ar~~GDSlGGvve~~------------------~~gvP~GLG~p~fdkLda~LA~alm--SIpAVKGVEfG~ 305 (441)
+|.+++.++.++|-. +|-+. |.|||.-.| -++.+|+.|+-.=| ++| |-=|-|+.
T Consensus 56 ~l~~~~~~a~~~g~~---ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~--~l~G~dsLlSivqmP~Gvp-VatV~Id~ 129 (183)
T 1o4v_A 56 RMFEYAKNAEERGIE---VIIAGAGGAAHLPGMVASITHLPVIGVPVKTS--TLNGLDSLFSIVQMPGGVP-VATVAINN 129 (183)
T ss_dssp HHHHHHHHTTTTTCC---EEEEEEESSCCHHHHHHHHCSSCEEEEEECCT--TTTTHHHHHHHHTCCTTCC-CEECCTTC
T ss_pred HHHHHHHHHHhCCCc---EEEEecCcccccHHHHHhccCCCEEEeeCCCC--CCCcHHHHHHHhcCCCCCe-eEEEecCC
Confidence 456677777766654 22222 344555444 37899999999999 888 87788877
Q ss_pred cccccc
Q 013510 306 GFAGTF 311 (441)
Q Consensus 306 GF~~a~ 311 (441)
||.++-
T Consensus 130 ~~nAa~ 135 (183)
T 1o4v_A 130 AKNAGI 135 (183)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 776553
No 17
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=38.28 E-value=34 Score=35.08 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=45.4
Q ss_pred EeeeecccCCeeeEEeecCCCCcc--CCHHHHHHHhhh--------------------cCCCCCCCCCCCCCC--CeE--
Q 013510 63 VTTFGESHGGGVGCIIDGCPPRIP--LSEADMQVDLDR--------------------RRPGQSRITTPRKET--DTC-- 116 (441)
Q Consensus 63 ~ttfGESHG~aig~VIdG~PaGl~--i~~e~I~~eL~R--------------------RrpG~~r~~t~R~E~--D~v-- 116 (441)
.---|.|=|..|-||+.|||+||= + .+.|+.+|.. +++|.---.-...+. +.+
T Consensus 208 ak~~GDS~GGvvevv~~gvP~GLG~pv-fdkLda~LA~A~mSI~AvKGvEiG~GF~~a~~~GSe~nD~~~~~~~~g~~~~ 286 (382)
T 1r53_A 208 YRGNKDSIGGVVTCVVRNLPTGLGEPC-FDKLEAMLAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRT 286 (382)
T ss_dssp HHHTTCCCCEEEEEEEESCCTTCSBTT-TBCHHHHHHHHHHTSTTBCCCEETTTTGGGGSCHHHHHCSBC--------CB
T ss_pred HHHhCCCCceEEEEEEecCCCCCCCcc-cccchHHHHHHhcCccceeEEEeccchhhhhccccccccceeccccCCceee
Confidence 334599999999999999999984 3 3455555542 222210000000011 112
Q ss_pred --EEEecccCCcccCCcEEEEEeCC
Q 013510 117 --KIYSGVSEGVTTGTPIHVFVPNT 139 (441)
Q Consensus 117 --~IlSGv~~G~TtGaPIa~~I~N~ 139 (441)
.--.|+.-|.|+|.||-+.+-=+
T Consensus 287 ~TN~aGGI~GGISnG~pIv~r~a~K 311 (382)
T 1r53_A 287 KTNNSGGVQGGISNGENIYFSVPFK 311 (382)
T ss_dssp CCCCSCSEETTEECSSCEEEEEEEC
T ss_pred cCcCccCccccccCCCeEEEEEEEC
Confidence 22368999999999999987544
No 18
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=31.64 E-value=61 Score=29.83 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCccccEEEEE------------------EEeCCCCcCCcccCchHHHHHHHhccCCc--ccEEEec
Q 013510 245 EKMIAAIDAVRVRGDSVGGVVTCI------------------VRNCPRGLGSPVFDKLEAELAKAMMSLPA--TKGFEVG 304 (441)
Q Consensus 245 ~~m~~~I~~ar~~GDSlGGvve~~------------------~~gvP~GLG~p~fdkLda~LA~almSIpA--VKGVEfG 304 (441)
++|.+++.++.++|-. +|-+. |.|||.-.| .++.+|+.|+-.=|- ++ |-=|-||
T Consensus 49 ~~~~~~~~~a~~~g~~---ViIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~--~l~G~daLlS~vqmp-~GvpVatV~I~ 122 (174)
T 3lp6_A 49 EAMFSYARGAAARGLE---VIIAGAGGAAHLPGMVAAATPLPVIGVPVPLG--RLDGLDSLLSIVQMP-AGVPVATVSIG 122 (174)
T ss_dssp HHHHHHHHHHHHHTCC---EEEEEEESSCCHHHHHHHHCSSCEEEEEECCS--SGGGHHHHHHHHCCC-TTCCCEECCTT
T ss_pred HHHHHHHHHHHhCCCC---EEEEecCchhhhHHHHHhccCCCEEEeeCCCC--CCCCHHHHHHHhhCC-CCCeeEEEEcC
Confidence 3567788888887754 23222 345555444 278899999887773 33 3446677
Q ss_pred ccccccc
Q 013510 305 SGFAGTF 311 (441)
Q Consensus 305 ~GF~~a~ 311 (441)
.||.++-
T Consensus 123 ~~~nAa~ 129 (174)
T 3lp6_A 123 GAGNAGL 129 (174)
T ss_dssp CHHHHHH
T ss_pred cchHHHH
Confidence 7776653
No 19
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=22.03 E-value=2.9e+02 Score=21.69 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCccccEEEEEEEeCCCCcCCcccCchHHHHHHHhccCCcccEEEecc
Q 013510 240 DPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGS 305 (441)
Q Consensus 240 d~~~~~~m~~~I~~ar~~GDSlGGvve~~~~gvP~GLG~p~fdkLda~LA~almSIpAVKGVEfG~ 305 (441)
-+|+.+++.+.|++|...|-+ .|.+ + -|-|+ ..|...+-+.|-..|.|+.+..+.
T Consensus 14 ~~eA~~~l~~fl~~a~~~g~~---~v~I-I----HGkG~---GvLr~~V~~~L~~~~~V~~f~~a~ 68 (83)
T 2zqe_A 14 VAEALLEVDQALEEARALGLS---TLRL-L----HGKGT---GALRQAIREALRRDKRVESFADAP 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCS---EEEE-E----CCSTT---SHHHHHHHHHHHHCTTEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHCCCC---EEEE-E----ECCCc---hHHHHHHHHHHhcCCceeEEEEcC
Confidence 367888999999999999976 2333 3 45564 379999999999999999999864
No 20
>1zla_K Latent nuclear antigen; latency associated nuclear antigen (LANA), kaposi'S sarcoma herpes virus (KSHV), nucleosome core particle, chromatin; 2.90A {Xenopus laevis}
Probab=21.03 E-value=27 Score=22.52 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=9.7
Q ss_pred ccCCcccCCcEE
Q 013510 122 VSEGVTTGTPIH 133 (441)
Q Consensus 122 v~~G~TtGaPIa 133 (441)
++.|++||+|++
T Consensus 8 lrsgrstgaplt 19 (26)
T 1zla_K 8 LRSGRSTGAPLT 19 (26)
T ss_pred eecCcccCCccc
Confidence 467899999985
Done!