RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013510
(441 letters)
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A
{Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Length = 382
Score = 667 bits (1723), Expect = 0.0
Identities = 198/368 (53%), Positives = 248/368 (67%), Gaps = 8/368 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RRRPGQS+++TPR E D
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KYG+++ GG
Sbjct: 62 RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQ---- 230
GR+SARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E L
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181
Query: 231 ---VESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAE 287
+RCPD A M+ I+ R DS+GGVVTC+VRN P GLG P FDKLEA
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241
Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTD-EFGNIRTRTNRSGGIQGGISNG 346
LA AM+S+PA+KGFE+GSGF G + GS+HND FY + E +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301
Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
E I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM ALVL D
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361
Query: 407 LMAQHAQC 414
L+ Q A+
Sbjct: 362 LLIQKARD 369
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta
tetrameric PROT protein structure initiative; 2.80A
{Campylobacter jejuni} SCOP: d.258.1.1
Length = 370
Score = 646 bits (1669), Expect = 0.0
Identities = 142/360 (39%), Positives = 200/360 (55%), Gaps = 10/360 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R+ G S+ TPRKE+D
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRK-GGSKFATPRKESD 60
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
++ SGV EG TTG PI + V N + DY + +RP+HAD TY KYG+R +GG
Sbjct: 61 KAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGG 120
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE++ RVA GAVA +L++F + + V V + E + + +
Sbjct: 121 GRSSARESVARVAGGAVAAMLLREF-DICVQSGVFGVGTFVSN---LKEEEFDFEFAKKS 176
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294
+ C DP+ I R DSVG V V GLG ++DKL+++LA A+M
Sbjct: 177 EIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMG 236
Query: 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIA 354
+ A K E+G G + + GS +ND + + +N SGGI GGISNGE + ++
Sbjct: 237 INAVKAVEIGEGINASKMRGSCNNDALK-----DGKFLSNHSGGILGGISNGENLILKTY 291
Query: 355 FKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQC 414
FKPT +I KQ ++ + + +GRHDPCV R + AMV LVL D L+ +
Sbjct: 292 FKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLLNASAN 351
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET:
FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB:
1umf_A
Length = 365
Score = 634 bits (1637), Expect = 0.0
Identities = 137/365 (37%), Positives = 198/365 (54%), Gaps = 19/365 (5%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR+ G++ TPRKE D
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SGV E +TGTPI + N R DY + +RPSHAD TY KYG+R +GG
Sbjct: 62 KVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE+ RVA GA AK +L++ G + + + + + + +
Sbjct: 122 GRSSARESAIRVAAGAFAKMLLREI-GIVCESGIIEIGG-------IKAKNYDFNHALKS 173
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDKLEAEL 288
+ D E E AI DS+GGV R+ P GLG ++ KL+A++
Sbjct: 174 EIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKI 233
Query: 289 AKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348
A+AMM L K E+G G + L GSE+ND +NRSGG+ GG+SNGE
Sbjct: 234 AEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQK-----GFLSNRSGGVLGGMSNGEE 288
Query: 349 INMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLM 408
I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++ALVL D ++
Sbjct: 289 IIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVL 348
Query: 409 AQHAQ 413
Sbjct: 349 LNLTS 353
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 582 bits (1502), Expect = 0.0
Identities = 123/387 (31%), Positives = 183/387 (47%), Gaps = 19/387 (4%)
Query: 58 GTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCK 117
R T GESHG + +I+G P + +S D+ L RRR G R + E D +
Sbjct: 2 NAMLRWQTAGESHGEALVAMIEGLPAGVRISTDDIVSALARRRLGYGRGARMKFEQDKVR 61
Query: 118 IYSGVSEGVTTGTPIHVFVPNTDQRGHDYS----------------EMSVAYRPSHADAT 161
+ +GV G+T G+P+ + + NT+ RP HAD T
Sbjct: 62 LLTGVRHGLTLGSPVAIEIANTEWPKWTEVMSADALDHDLPREGRNAPLSRPRPGHADLT 121
Query: 162 YDMKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDV 220
KYG + RSSARET RVA G VAK+ L Q G +A+V V D+
Sbjct: 122 GMRKYGFDDARPVLERSSARETASRVALGEVAKQFLDQAFGIRTVAHVVALGGVQTNPDL 181
Query: 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV 280
L+ ++++ VR D E ++I I+ + D++GGV+ + P G+G+ V
Sbjct: 182 PLPTPDDLEALDASPVRTLDKEAEVRIIERINEAKKAADTLGGVIEVLAYGVPAGIGTYV 241
Query: 281 FD--KLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGG 338
+L+A LA A+M + A KG E+G GF GS+ +DE + G I +NR+GG
Sbjct: 242 ESDRRLDAALASAIMGIQAFKGVEIGDGFLAASRPGSQAHDEIVVNADGRIDRLSNRAGG 301
Query: 339 IQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAM 398
I+GG+SNG++I +R A KP +I + TV E+ R D VP A + EAM
Sbjct: 302 IEGGMSNGQVIRVRGAMKPIPSIPKALRTVDVLTGESAQAINQRSDSTAVPAASVVAEAM 361
Query: 399 VALVLMDQLMAQHAQCHLFPINPDLQG 425
V L L + + + +L+
Sbjct: 362 VRLTLAKYALDKFGGDSVAETRRNLES 388
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 570 bits (1472), Expect = 0.0
Identities = 127/376 (33%), Positives = 183/376 (48%), Gaps = 22/376 (5%)
Query: 61 FRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYS 120
R T GESHG + +++G + ++ AD+ L RRR G R E D + S
Sbjct: 2 LRWITAGESHGRALVAVVEGMVAGVHVTSADIADQLARRRLGYGRGARMTFERDAVTVLS 61
Query: 121 GVSEGVTTGTPIHVFVPNTDQRGH---------DYSEMS--------VAYRPSHADATYD 163
G+ G T G PI + + NT+ D +E++ RP HAD
Sbjct: 62 GIRHGSTLGGPIAIEIGNTEWPKWETVMAADPVDPAELADVARNAPLTRPRPGHADYAGM 121
Query: 164 MKYGVRSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 222
+KYG + R+SARET RVA G VA+ L+Q G E+L++V E
Sbjct: 122 LKYGFDDARPVLERASARETAARVAAGTVARAFLRQALGVEVLSHVISIGASAPYEG-PP 180
Query: 223 HEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF- 281
L ++++ VR D MIA I+A + GD++GGVV + P GLGS
Sbjct: 181 PRAEDLPAIDASPVRAYDKAAEADMIAQIEAAKKDGDTLGGVVEAVALGLPVGLGSFTSG 240
Query: 282 -DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 340
+L+++LA A+M + A KG E+G GF GS +DE Y G + TNR+GG++
Sbjct: 241 DHRLDSQLAAAVMGIQAIKGVEIGDGFQTARRRGSRAHDEMYPGPDG-VVRSTNRAGGLE 299
Query: 341 GGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVA 400
GG++NG+ + +R A KP ST+ R TV + + R D C VP A +VE MVA
Sbjct: 300 GGMTNGQPLRVRAAMKPISTVPRALATVDLATGDEAVAIHQRSDVCAVPAAGVVVETMVA 359
Query: 401 LVLMDQLMAQHAQCHL 416
LVL + + L
Sbjct: 360 LVLARAALEKFGGDSL 375
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 2.05A {Aquifex aeolicus} SCOP:
d.258.1.1
Length = 401
Score = 569 bits (1468), Expect = 0.0
Identities = 132/392 (33%), Positives = 190/392 (48%), Gaps = 22/392 (5%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
Y R T GESHG G+ I++G P +PLSE ++ +L RR+ G R + E D
Sbjct: 3 HMSLRYLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKD 62
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDY-----------SEMSVAYRPSHADATYD 163
T +I SGV G T G+PI +F+ N D RP HAD +
Sbjct: 63 TAEILSGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGG 122
Query: 164 MKYGVRSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVD 222
+KY R ++ R+SARET RVA GAV KK L +F G +I ++V + E
Sbjct: 123 IKYNQRDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKDK 181
Query: 223 HEMLT-------LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRG 275
++ E + +R P PE E+ ID V+ +G+S+GGV N P G
Sbjct: 182 SYFANPEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPG 241
Query: 276 LGSPVF--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRT 333
LGS + +++ +A+AMMS+ A KG E+G GF GS+ +DE E +
Sbjct: 242 LGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHS 301
Query: 334 NRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVP 393
N GG +GGI+NG I +R+A KP T+ +V E KE + R D VP A
Sbjct: 302 NNLGGTEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASV 361
Query: 394 MVEAMVALVLMDQLMAQHAQCHLFPINPDLQG 425
+ EAM+A+VL D L+ + + + +
Sbjct: 362 VGEAMLAIVLADALLEKLGGDFMEEVKKRFED 393
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate,
anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} SCOP: d.258.1.1
Length = 388
Score = 552 bits (1424), Expect = 0.0
Identities = 125/380 (32%), Positives = 181/380 (47%), Gaps = 17/380 (4%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
R T GESHG + II+G P +PL+ D+ DL RR+ G R + E D SG
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSG 61
Query: 122 VSEGVTTGTPIHVFVPNTDQRG-HDYSEMS------------VAYRPSHADATYDMKYGV 168
V G TTG PI + V N D + D RP HAD +KY
Sbjct: 62 VRHGKTTGAPITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRF 121
Query: 169 RSVQGG-GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLT 227
++ RSSARET RVA GAVAK++L + EI +V +
Sbjct: 122 DDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANHVVVFGGKEIDVPENLTVAEI 180
Query: 228 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV--FDKLE 285
+ + V + E +++ ID ++ GD++GGVV +V P GLGS V KL+
Sbjct: 181 KQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240
Query: 286 AELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISN 345
A LA+A++S+ A KG E G GF + GS+ DE + RTN GG +GG++N
Sbjct: 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTN 300
Query: 346 GEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMD 405
G+ I +R KP T+ + +V E E R DP +P A ++EA+VA VL
Sbjct: 301 GQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQ 360
Query: 406 QLMAQHAQCHLFPINPDLQG 425
+++ + + +L + +
Sbjct: 361 EILEKFSSDNLEELKEAVAK 380
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 56/219 (25%)
Query: 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSP- 279
+D E +I+ + + + D V+ D +++ + S
Sbjct: 7 MDFETGEHQYQYKDIL----SVFEDAFVDNFDCKDVQ-DMPKSILS--KEEIDHIIMSKD 59
Query: 280 -------VFDKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTR 332
+F L +K E+ F L N +F I+T
Sbjct: 60 AVSGTLRLFWTLL------------SKQEEMVQKFVEEVL---RINYKFLMSP---IKTE 101
Query: 333 TNRSGGIQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETEL---IARGRHDPCVVP 389
Q + I R + + K N V+R + +L + R V+
Sbjct: 102 QR-----QPSMMTRMYIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVL- 154
Query: 390 RAVPMVEAM--------VALVLMDQLMAQHAQCHLFPIN 420
++ + V + + +F +N
Sbjct: 155 -----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.23
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 423 LQGTMKL--PELEPAPA 437
LQ ++KL + APA
Sbjct: 25 LQASLKLYAD--DSAPA 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.48
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 45/117 (38%)
Query: 242 EY------AEKMI--AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMM 293
EY A+ M + ++ V RG ++ V PR EL ++
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAV-------PRD-----------ELGRSNY 1807
Query: 294 SLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIIN 350
+ A V + F S+ ++ + G R+G + EI+N
Sbjct: 1808 GMIAINPGRVAASF-------SQEALQYVVERVG------KRTGWLV------EIVN 1845
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.61A
{Clostridium acetobutylicum} SCOP: c.23.10.7
Length = 290
Score = 28.6 bits (63), Expect = 3.6
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 230 QVESNIVRCPDPEYAEKMIAAIDAVRVRGDS-----VGGVVTCIVRNCPRGLGSPVFDKL 284
Q ES+ + Y +K++ I+A+R + + G + + G G ++ +
Sbjct: 118 QGESDSLNGNYKVYYKKLLLIIEALRKELNVPDIPIIIGGLGDFLGKERFGKGCTEYNFI 177
Query: 285 EAELAKAMMSLPAT 298
EL K
Sbjct: 178 NKELQKFAFEQDNC 191
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 27.6 bits (62), Expect = 8.9
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 11/41 (26%)
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRP 155
T K++S TG + GH S R
Sbjct: 140 TLKVWS-----AVTGKCLRTL------VGHTGGVWSSQMRD 169
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 27.6 bits (62), Expect = 9.5
Identities = 3/48 (6%), Positives = 8/48 (16%), Gaps = 11/48 (22%)
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATY 162
+ +G + + S D+
Sbjct: 230 KISCFD-----GKSGEFLKYI------EDDQEPVQGGIFALSWLDSQK 266
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,821,496
Number of extensions: 431046
Number of successful extensions: 861
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 17
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)