RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 013510
(441 letters)
>d1r53a_ d.258.1.1 (A:) Chorismate synthase, AroC {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 371
Score = 419 bits (1079), Expect = e-146
Identities = 199/368 (54%), Positives = 254/368 (69%), Gaps = 8/368 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
S FG FRVTT+GESH VGCI+DG PP + L+EAD+Q L RRRPGQS+++TPR E D
Sbjct: 2 STFGKLFRVTTYGESHCKSVGCIVDGVPPGMSLTEADIQPQLTRRRPGQSKLSTPRDEKD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SG G T GTPI + + N DQR HDYS+M RPSHAD TY KYG+++ GG
Sbjct: 62 RVEIQSGTEFGKTLGTPIAMMIKNEDQRPHDYSDMDKFPRPSHADFTYSEKYGIKASSGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEM------LTL 228
GR+SARETIGRVA GA+A+K L Q + EI+A+V+Q + + D D E +T
Sbjct: 122 GRASARETIGRVASGAIAEKFLAQNSNVEIVAFVTQIGEIKMNRDSFDPEFQHLLNTITR 181
Query: 229 DQVES-NIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAE 287
++V+S +RCPD A M+ I+ R DS+GGVVTC+VRN P GLG P FDKLEA
Sbjct: 182 EKVDSMGPIRCPDASVAGLMVKEIEKYRGNKDSIGGVVTCVVRNLPTGLGEPCFDKLEAM 241
Query: 288 LAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEF-GNIRTRTNRSGGIQGGISNG 346
LA AM+S+PA+KGFE+GSGF G + GS+HND FY ++ +RT+TN SGG+QGGISNG
Sbjct: 242 LAHAMLSIPASKGFEIGSGFQGVSVPGSKHNDPFYFEKETNRLRTKTNNSGGVQGGISNG 301
Query: 347 EIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQ 406
E I + FK +TI ++Q T T + +E L A+GRHDP V PRA+P+VEAM ALVL D
Sbjct: 302 ENIYFSVPFKSVATISQEQKTATYDGEEGILAAKGRHDPAVTPRAIPIVEAMTALVLADA 361
Query: 407 LMAQHAQC 414
L+ Q A+
Sbjct: 362 LLIQKARD 369
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 400 bits (1028), Expect = e-138
Identities = 132/378 (34%), Positives = 190/378 (50%), Gaps = 22/378 (5%)
Query: 60 YFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIY 119
Y R T GESHG G+ I++G P +PLSE ++ +L RR+ G R + E DT +I
Sbjct: 4 YLRFLTAGESHGKGLTAILEGIPANLPLSEEEINHELRRRQRGYGRGGRMKIEKDTAEIL 63
Query: 120 SGVSEGVTTGTPIHVFVPNTDQRGHDY-----------SEMSVAYRPSHADATYDMKYGV 168
SGV G T G+PI +F+ N D RP HAD + +KY
Sbjct: 64 SGVRFGKTLGSPIALFIRNRDWENWKEKMAIEGEPSPSVVPFTRPRPGHADLSGGIKYNQ 123
Query: 169 RSVQG-GGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPE-------DV 220
R ++ R+SARET RVA GAV KK L +F G +I ++V + E
Sbjct: 124 RDLRNILERASARETAARVAVGAVCKKFLSEF-GIKIGSFVVSIGQKEVEELKDKSYFAN 182
Query: 221 VDHEMLTLDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPV 280
+ + ++ E + +R P PE E+ ID V+ +G+S+GGV N P GLGS +
Sbjct: 183 PEKLLSYHEKAEDSELRIPFPEKDEEFKTYIDEVKEKGESLGGVFEVFALNVPPGLGSHI 242
Query: 281 F--DKLEAELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGG 338
+++ +A+AMMS+ A KG E+G GF GS+ +DE E +N GG
Sbjct: 243 QWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQVHDEIGWSEGKGYFRHSNNLGG 302
Query: 339 IQGGISNGEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAM 398
+GGI+NG I +R+A KP T+ +V E KE + R D VP A + EAM
Sbjct: 303 TEGGITNGMPIVVRVAMKPIPTLKNPLRSVDIETKEEMKAGKERTDIVAVPAASVVGEAM 362
Query: 399 VALVLMDQLMAQHAQCHL 416
+A+VL D L+ + +
Sbjct: 363 LAIVLADALLEKLGGDFM 380
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 393 bits (1010), Expect = e-135
Identities = 124/374 (33%), Positives = 180/374 (48%), Gaps = 17/374 (4%)
Query: 62 RVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETDTCKIYSG 121
R T GESHG + II+G P +PL+ D+ DL RR+ G R + E D SG
Sbjct: 2 RYLTAGESHGPRLTAIIEGIPAGLPLTAEDINEDLRRRQGGYGRGGRMKIENDQVVFTSG 61
Query: 122 VSEGVTTGTPIHVFVPNTDQRGHDYSEMS-------------VAYRPSHADATYDMKYGV 168
V G TTG PI + V N D + + RP HAD +KY
Sbjct: 62 VRHGKTTGAPITMDVINKDHQKWLDIMSAEDIEDRLKSKRKITHPRPGHADLVGGIKYRF 121
Query: 169 RSVQ-GGGRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLT 227
++ RSSARET RVA GAVAK++L + EI +V +
Sbjct: 122 DDLRNSLERSSARETTMRVAVGAVAKRLLAEL-DMEIANHVVVFGGKEIDVPENLTVAEI 180
Query: 228 LDQVESNIVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVF--DKLE 285
+ + V + E +++ ID ++ GD++GGVV +V P GLGS V KL+
Sbjct: 181 KQRAAQSEVSIVNQEREQEIKDYIDQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLD 240
Query: 286 AELAKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISN 345
A LA+A++S+ A KG E G GF + GS+ DE + RTN GG +GG++N
Sbjct: 241 ARLAQAVVSINAFKGVEFGLGFEAGYRKGSQVMDEILWSKEDGYTRRTNNLGGFEGGMTN 300
Query: 346 GEIINMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMD 405
G+ I +R KP T+ + +V E E R DP +P A ++EA+VA VL
Sbjct: 301 GQPIVVRGVMKPIPTLYKPLMSVDIETHEPYKATVERSDPTALPAAGMVMEAVVATVLAQ 360
Query: 406 QLMAQHAQCHLFPI 419
+++ + + +L +
Sbjct: 361 EILEKFSSDNLEEL 374
>d1sq1a_ d.258.1.1 (A:) Chorismate synthase, AroC {Campylobacter
jejuni [TaxId: 197]}
Length = 360
Score = 388 bits (998), Expect = e-134
Identities = 142/359 (39%), Positives = 197/359 (54%), Gaps = 10/359 (2%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ FGT + T+FGESHG VGCIIDG P + E +Q +LD+R+ G S+ TPRKE+D
Sbjct: 2 NTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELDKRKGG-SKFATPRKESD 60
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
++ SGV EG TTG PI + V N + DY + +RP+HAD TY KYG+R +GG
Sbjct: 61 KAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPAHADFTYFYKYGIRDHRGG 120
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE++ RVA GAVA +L++F V + E + + +
Sbjct: 121 GRSSARESVARVAGGAVAAMLLREFDICVQSGVFG----VGTFVSNLKEEEFDFEFAKKS 176
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMS 294
+ C DP+ I R DSVG V V GLG ++DKL+++LA A+M
Sbjct: 177 EIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGLGEVLYDKLDSKLAHALMG 236
Query: 295 LPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEIINMRIA 354
+ A K E+G G + + GS +ND +F +N SGGI GGISNGE + ++
Sbjct: 237 INAVKAVEIGEGINASKMRGSCNNDALKDGKF-----LSNHSGGILGGISNGENLILKTY 291
Query: 355 FKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLMAQHAQ 413
FKPT +I KQ ++ + + +GRHDPCV R + AMV LVL D L+ +
Sbjct: 292 FKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASAMVRLVLADCLLLNASA 350
>d1um0a_ d.258.1.1 (A:) Chorismate synthase, AroC {Helicobacter
pylori [TaxId: 210]}
Length = 365
Score = 388 bits (998), Expect = e-134
Identities = 137/365 (37%), Positives = 195/365 (53%), Gaps = 19/365 (5%)
Query: 55 SAFGTYFRVTTFGESHGGGVGCIIDGCPPRIPLSEADMQVDLDRRRPGQSRITTPRKETD 114
+ G + R+TTFGESHG +G ++DG P I + A ++ ++ RR+ G++ TPRKE D
Sbjct: 2 NTLGRFLRLTTFGESHGDVIGGVLDGMPSGIKIDYALLENEMKRRQGGRNVFITPRKEDD 61
Query: 115 TCKIYSGVSEGVTTGTPIHVFVPNTDQRGHDYSEMSVAYRPSHADATYDMKYGVRSVQGG 174
+I SGV E +TGTPI + N R DY + +RPSHAD TY KYG+R +GG
Sbjct: 62 KVEITSGVFEDFSTGTPIGFLIHNQRARSKDYDNIKNLFRPSHADFTYFHKYGIRDFRGG 121
Query: 175 GRSSARETIGRVAPGAVAKKILKQFAGTEILAYVSQAHNVVLPEDVVDHEMLTLDQVESN 234
GRSSARE+ RVA GA AK +L++ + + + +
Sbjct: 122 GRSSARESAIRVAAGAFAKMLLREIGIVCESGIIEIGGI--------KAKNYDFNHALKS 173
Query: 235 IVRCPDPEYAEKMIAAIDAVRVRGDSVGGVVTCIVRNC------PRGLGSPVFDKLEAEL 288
+ D E E AI DS+GGV R+ P GLG ++ KL+A++
Sbjct: 174 EIFALDEEQEEAQKTAIQNAIKNHDSIGGVALIRARSIKTNQKLPIGLGQGLYAKLDAKI 233
Query: 289 AKAMMSLPATKGFEVGSGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQGGISNGEI 348
A+AMM L K E+G G + L GSE+ND F +NRSGG+ GG+SNGE
Sbjct: 234 AEAMMGLNGVKAVEIGKGVESSLLKGSEYNDLMDQKGF-----LSNRSGGVLGGMSNGEE 288
Query: 349 INMRIAFKPTSTIGRKQNTVTREKKETELIARGRHDPCVVPRAVPMVEAMVALVLMDQLM 408
I +R+ FKPT +I + Q T+ E E + +GRHDPC+ R + E+++ALVL D ++
Sbjct: 289 IIVRVHFKPTPSIFQPQRTIDINGNECECLLKGRHDPCIAIRGSVVCESLLALVLADMVL 348
Query: 409 AQHAQ 413
Sbjct: 349 LNLTS 353
>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella
flexneri [TaxId: 623]}
Length = 264
Score = 29.5 bits (65), Expect = 0.68
Identities = 12/55 (21%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 287 ELAKAMMSLPATKGFEVG-SGFAGTFLTGSEHNDEFYTDEFGNIRTRTNRSGGIQ 340
L KA+ A E + E D G++ R N S G +
Sbjct: 4 SLLKALSEADAIASSEQEVRQILLEEA--ARLQKEVRFDGLGSVLIRLNESTGPK 56
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB
{Staphylococcus aureus [TaxId: 1280]}
Length = 312
Score = 27.3 bits (59), Expect = 3.6
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 208 VSQAHNVVLPEDVVDHEMLTLDQVESNI 235
+ + +V P D+V+ E++ D V+ N+
Sbjct: 285 LERHIDVFAPNDIVNEELINNDHVDDNL 312
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 27.5 bits (59), Expect = 3.9
Identities = 11/65 (16%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 249 AAIDAVRVRGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAMMSLPATKGFEVGSGFA 308
A A+ GD C P+ D + +L K L
Sbjct: 17 EARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKF---LGCDVARVTNGARE 73
Query: 309 GTFLT 313
F
Sbjct: 74 AKFAV 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,607,514
Number of extensions: 75516
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 13
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)