Your job contains 1 sequence.
>013511
MAYGGGVPAAMSGLASASASTIKQVKLERESELRIEVGEMPLRLRLLNGNAEIYGTELPP
EIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHAKASP
SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA
TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG
MVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG
GVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIG
ADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLA
PSPGMLPSKYLIAGTLTWLET
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013511
(441 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2084938 - symbol:CLPS3 "CLP-similar protein 3"... 1644 4.5e-169 1
TAIR|locus:2178072 - symbol:CLPS5 "CLP1-similar protein 5... 1105 5.9e-112 1
DICTYBASE|DDB_G0285507 - symbol:clp1 "pre-mRNA cleavage c... 880 4.1e-88 1
UNIPROTKB|F1NA64 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 865 1.6e-86 1
UNIPROTKB|Q5ZJL4 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 863 2.6e-86 1
UNIPROTKB|Q92989 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 851 4.9e-85 1
UNIPROTKB|Q4R7R3 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 851 4.9e-85 1
MGI|MGI:2138968 - symbol:Clp1 "CLP1, cleavage and polyade... 850 6.2e-85 1
RGD|1307679 - symbol:Clp1 "cleavage and polyadenylation f... 850 6.2e-85 1
UNIPROTKB|A2VE01 - symbol:CLP1 "Polyribonucleotide 5'-hyd... 848 1.0e-84 1
UNIPROTKB|E2R321 - symbol:CLP1 "Uncharacterized protein" ... 848 1.0e-84 1
UNIPROTKB|F2Z5N4 - symbol:CLP1 "Uncharacterized protein" ... 848 1.0e-84 1
UNIPROTKB|Q66JK4 - symbol:clp1 "Polyribonucleotide 5'-hyd... 839 9.1e-84 1
UNIPROTKB|Q6NS21 - symbol:clp1 "Polyribonucleotide 5'-hyd... 835 2.4e-83 1
UNIPROTKB|B4MRZ9 - symbol:cbc "Protein CLP1 homolog" spec... 797 2.6e-79 1
UNIPROTKB|B4KML2 - symbol:cbc "Protein CLP1 homolog" spec... 774 7.1e-77 1
UNIPROTKB|B4GGT6 - symbol:cbc "Protein CLP1 homolog" spec... 765 6.3e-76 1
UNIPROTKB|Q28ZT4 - symbol:cbc "Protein CLP1 homolog" spec... 765 6.3e-76 1
FB|FBgn0033842 - symbol:cbc "crowded by cid" species:7227... 762 1.3e-75 1
UNIPROTKB|B4QEE3 - symbol:cbc "Protein CLP1 homolog" spec... 762 1.3e-75 1
UNIPROTKB|B4JVN0 - symbol:cbc "Protein CLP1 homolog" spec... 761 1.7e-75 1
UNIPROTKB|B4MCL6 - symbol:cbc "Protein CLP1 homolog" spec... 759 2.7e-75 1
WB|WBGene00010304 - symbol:clpf-1 species:6239 "Caenorhab... 758 3.5e-75 1
UNIPROTKB|B4HQJ2 - symbol:cbc "Protein CLP1 homolog" spec... 757 4.5e-75 1
UNIPROTKB|B4P4H2 - symbol:cbc "Protein CLP1 homolog" spec... 757 4.5e-75 1
UNIPROTKB|B3MGZ0 - symbol:cbc "Protein CLP1 homolog" spec... 750 2.5e-74 1
UNIPROTKB|B3NRK6 - symbol:cbc "Protein CLP1 homolog" spec... 733 1.6e-72 1
POMBASE|SPAC22H10.05c - symbol:SPAC22H10.05c "mRNA cleava... 468 5.4e-55 2
ASPGD|ASPL0000054763 - symbol:AN0161 species:162425 "Emer... 374 4.6e-46 3
SGD|S000005776 - symbol:CLP1 "Component of the cleavage a... 372 2.8e-34 1
UNIPROTKB|A4QQE0 - symbol:CLP1 "Protein CLP1" species:242... 362 3.2e-33 1
CGD|CAL0000231 - symbol:orf19.6931 species:5476 "Candida ... 274 1.7e-26 2
UNIPROTKB|Q59ST8 - symbol:CLP1 "Protein CLP1" species:237... 274 1.7e-26 2
TAIR|locus:2183830 - symbol:AT5G11010 species:3702 "Arabi... 168 1.0e-09 2
UNIPROTKB|Q6BQV7 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 166 4.9e-09 1
UNIPROTKB|A8WQV9 - symbol:nol-9 "Polynucleotide 5'-hydrox... 155 5.8e-08 1
UNIPROTKB|G3V7B0 - symbol:Nol9 "Protein Nol9" species:101... 156 6.7e-08 1
MGI|MGI:1921285 - symbol:Nol9 "nucleolar protein 9" speci... 145 1.1e-06 1
UNIPROTKB|Q4IR18 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 144 1.3e-06 2
UNIPROTKB|Q5SY16 - symbol:NOL9 "Polynucleotide 5'-hydroxy... 144 1.4e-06 1
UNIPROTKB|E2R0I7 - symbol:NOL9 "Uncharacterized protein" ... 139 3.1e-06 1
POMBASE|SPCC830.03 - symbol:grc3 "polynucleotide kinase G... 145 3.4e-06 2
UNIPROTKB|E1BPN0 - symbol:NOL9 "Polynucleotide 5'-hydroxy... 138 6.1e-06 1
UNIPROTKB|I3LBV6 - symbol:NOL9 "Uncharacterized protein" ... 135 1.3e-05 1
WB|WBGene00010709 - symbol:nol-9 species:6239 "Caenorhabd... 132 2.0e-05 1
UNIPROTKB|Q9U3B6 - symbol:nol-9 "Polynucleotide 5'-hydrox... 132 2.0e-05 1
SGD|S000003958 - symbol:GRC3 "Polynucleotide kinase prese... 132 2.5e-05 1
DICTYBASE|DDB_G0277945 - symbol:nol9 "NUC156 family prote... 131 6.0e-05 2
UNIPROTKB|P0CM78 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 129 6.5e-05 1
UNIPROTKB|P0CM79 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 129 6.5e-05 1
UNIPROTKB|Q6CQ06 - symbol:GRC3 "Polynucleotide 5'-hydroxy... 126 0.00011 1
TAIR|locus:2178062 - symbol:AT5G39920 "AT5G39920" species... 101 0.00012 1
>TAIR|locus:2084938 [details] [associations]
symbol:CLPS3 "CLP-similar protein 3" species:3702
"Arabidopsis thaliana" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005849 "mRNA cleavage
factor complex" evidence=ISS;IPI] [GO:0006777 "Mo-molybdopterin
cofactor biosynthetic process" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006397 "mRNA processing"
evidence=RCA;IMP] [GO:0009908 "flower development" evidence=IMP]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA;IMP] [GO:0048827 "phyllome development"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006397 GO:GO:0010228
GO:GO:0009908 EMBL:AC011437 eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 GO:GO:0005849
GO:GO:0048827 ProtClustDB:CLSN2684287 EMBL:AY062866 EMBL:AY128751
IPI:IPI00524800 RefSeq:NP_187119.1 RefSeq:NP_974220.1
UniGene:At.27208 SMR:Q9SR06 IntAct:Q9SR06 STRING:Q9SR06
EnsemblPlants:AT3G04680.1 EnsemblPlants:AT3G04680.2 GeneID:819626
KEGG:ath:AT3G04680 TAIR:At3g04680 InParanoid:Q9SR06
Genevestigator:Q9SR06 Uniprot:Q9SR06
Length = 444
Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
Identities = 310/443 (69%), Positives = 373/443 (84%)
Query: 1 MAYGG-GVPXXXXXXXXXXXXTIKQVKLERESELRIEVGEMPLRLRLLNGNAEIYGTELP 59
MAYGG + +KQVKLERESELRIEV E PLRLR++NG AEI+G+ELP
Sbjct: 1 MAYGGPSMNPPALSGAVPGSANLKQVKLERESELRIEVSEEPLRLRVVNGTAEIFGSELP 60
Query: 60 PEIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXX 119
PEIW TFPPR+KFAVFTWY ATIEMDG ETDYTADETPMVSY+NV+A+L+ RR
Sbjct: 61 PEIWRTFPPRMKFAVFTWYGATIEMDGVTETDYTADETPMVSYINVHAILDARRRFAKAS 120
Query: 120 XXXXXXXXQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179
QGPRVIVVGPTDSGKSTL++MLLSWAAK GW+PTFVDLD+GQG+ITIPG IA
Sbjct: 121 TSNDPESSQGPRVIVVGPTDSGKSTLTKMLLSWAAKQGWRPTFVDLDVGQGSITIPGSIA 180
Query: 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAA 239
A PIE+P+DPVEG PL+M LVY++GHA+P+ NVELYK LVKELAQ+LE+QF GN ESRAA
Sbjct: 181 AAPIEMPLDPVEGFPLDMALVYYYGHASPNMNVELYKALVKELAQVLEKQFVGNPESRAA 240
Query: 240 GMVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299
GMVINTMGWIEG+GYELLLHAIDTF A+VVLVLGQEKLFS L+DVL+++ NVDVVKL KS
Sbjct: 241 GMVINTMGWIEGIGYELLLHAIDTFNASVVLVLGQEKLFSRLKDVLRSKSNVDVVKLHKS 300
Query: 300 GGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPI 359
GGVV+R +VR+++R+++I+EYFYGL+ +LSP+AN ++FSD V+RIGGGPQAP+SALP
Sbjct: 301 GGVVARVKEVRKRSRNFKIQEYFYGLSKELSPYANTSSFSDLQVFRIGGGPQAPKSALPA 360
Query: 360 GADPVANPLRIVPVNVD-QELLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITY 418
G+ V+NPLR+ PVN+D ++LLH VLAVSYA++ DQIISSNV+GF++VT V+ Q+K ITY
Sbjct: 361 GSTSVSNPLRVTPVNIDDRDLLHSVLAVSYAEEPDQIISSNVSGFVYVTEVNVQKKKITY 420
Query: 419 LAPSPGMLPSKYLIAGTLTWLET 441
LAPSPG LPSK L+AG+L WLE+
Sbjct: 421 LAPSPGTLPSKLLVAGSLAWLES 443
>TAIR|locus:2178072 [details] [associations]
symbol:CLPS5 "CLP1-similar protein 5" species:3702
"Arabidopsis thaliana" [GO:0005525 "GTP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006777 "Mo-molybdopterin
cofactor biosynthetic process" evidence=IEA] EMBL:CP002688
GenomeReviews:BA000015_GR eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 InterPro:IPR010655 Pfam:PF06807 EMBL:AB010077
EMBL:AY954872 IPI:IPI00548866 RefSeq:NP_198809.2 UniGene:At.55267
ProteinModelPortal:Q9FLE2 SMR:Q9FLE2 IntAct:Q9FLE2 STRING:Q9FLE2
EnsemblPlants:AT5G39930.1 GeneID:833990 KEGG:ath:AT5G39930
TAIR:At5g39930 InParanoid:Q9FLE2 OMA:EYISCET PhylomeDB:Q9FLE2
ProtClustDB:CLSN2684287 Genevestigator:Q9FLE2 Uniprot:Q9FLE2
Length = 424
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 226/420 (53%), Positives = 298/420 (70%)
Query: 22 IKQVKLERESELRIEVGEM-PLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
I++VKLE++SELRIE+ PLRLRLL+G AEI+G ELP E+W+TFPP + FAVFTWY A
Sbjct: 6 IRRVKLEKQSELRIELQPTSPLRLRLLDGKAEIFGYELPHEVWITFPPLMTFAVFTWYGA 65
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
TIE+DG +Y + ETPMV+Y+ ++ L+ +R+ +GPRVI+VG DS
Sbjct: 66 TIEIDGITGNEYISCETPMVNYLGLHNSLQVQRHRVTSSTRDSASSQEGPRVIIVGDIDS 125
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL++MLL+WA K GWKPTFVDL++GQ +ITIPG IAA PI++ +DPVEG PL+ L+
Sbjct: 126 GKSTLAKMLLNWAVKDGWKPTFVDLNVGQSSITIPGTIAAAPIKMLVDPVEGFPLDKALI 185
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
++FG PS N+ LY+ LV+ELA+ L+ +F+ NAESRA+GMVI+TMG+I GY LLLHA
Sbjct: 186 HYFGLTNPSVNLRLYRTLVEELARELKEEFSANAESRASGMVIDTMGFIVREGYALLLHA 245
Query: 261 IDTFKANVVLVLGQE-KLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
I TF A++V+V+GQE KL L+ LK + N+ V+ L+KS GV SR+S R+ R+ I+
Sbjct: 246 IRTFNASLVIVVGQEEKLVYDLKKNLKFKKNLQVLNLEKSEGVFSRSSDFRKTLRNSNIQ 305
Query: 320 EYFYGLTNDLSPHANVANFSDFLVYRIGG-GPQAPRSALPIGADPVANPLRIVPVNVDQE 378
YFYG+TNDL+ + FSD VYRIG SA G DP L+I V +D+
Sbjct: 306 NYFYGVTNDLTVYTKTVKFSDVQVYRIGDFRVSGSTSAHQRGNDP----LKITLVTIDEH 361
Query: 379 LLHLVLAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTW 438
L++ VLA+SYA DQIISS VAGF+ + NVD + ITY++PS LPSK LI GTLTW
Sbjct: 362 LVNKVLAISYAIKPDQIISSIVAGFVCIKNVDISEERITYVSPSAAELPSKILILGTLTW 421
>DICTYBASE|DDB_G0285507 [details] [associations]
symbol:clp1 "pre-mRNA cleavage complex subunit"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] dictyBase:DDB_G0285507
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
EMBL:AAFI02000079 GO:GO:0006397 eggNOG:COG5623 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_638095.1
ProteinModelPortal:Q54N48 STRING:Q54N48 EnsemblProtists:DDB0235305
GeneID:8625143 KEGG:ddi:DDB_G0285507 InParanoid:Q54N48
ProtClustDB:CLSZ2728913 Uniprot:Q54N48
Length = 459
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 182/417 (43%), Positives = 264/417 (63%)
Query: 27 LERESELRIEVG-EMPLRLRLLNGNAEIYGTELP-PEIWLTFPPRLKFAVFTWYEATIEM 84
LE ELR E+ + ++L+ G AE +GTEL +++ K AVFTW IE+
Sbjct: 50 LEITQELRYEIDFDQNGWMKLIEGTAECFGTELSLNKVYKL--SGTKGAVFTWTGCKIEI 107
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
+ Y ++TPM Y V L+ R GPRVI+VGPTDSGKS+
Sbjct: 108 TNNCQP-YIGEKTPMPQYAGVYQELDAFR-----VSILDEPKKSGPRVIIVGPTDSGKSS 161
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
LS++LL+++A+ G++P FVDLD GQG+ITIPG I+A I+ P+D EG+ +PL +F+G
Sbjct: 162 LSKILLAYSARSGYQPLFVDLDPGQGSITIPGTISAAHIQNPLDIEEGLAGGIPLAHFYG 221
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
H + N +L+K L K LA +++Q + + SR +G + NT GWI+G+GY++LL ID F
Sbjct: 222 HTSLDVNPDLFKALCKNLASFIDKQLDSSNISRISGFIANTCGWIDGLGYKILLQNIDVF 281
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
KAN+++V+ EKL+S + + N + ++KL KSGGV R R+K R RI+EYF
Sbjct: 282 KANLIIVMDNEKLYSDISSHYSQKDNSIKIIKLPKSGGVFIRPPVFRKKTRMNRIKEYFN 341
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G+ ++LSPH V +F D +YR GGGP AP SALPIG +PL+I V ++ H +
Sbjct: 342 GINDNLSPHYIVLDFKDVSIYRTGGGPAAPASALPIGTSSQIDPLQITEVYPSLDMCHSI 401
Query: 384 LAVSYAKDADQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
A+SYAK A I SNVAGF++V+++D + K IT ++P+PG LPS++L+ GTL W+E
Sbjct: 402 FAISYAKQASNIFHSNVAGFLYVSDIDMETKKITVISPAPGPLPSRFLLLGTLKWME 458
>UNIPROTKB|F1NA64 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9031 "Gallus gallus" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=IEA] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=IEA] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=IEA] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=IEA] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 GeneTree:ENSGT00390000000344
OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 IPI:IPI00603182 EMBL:AADN02050749
Ensembl:ENSGALT00000011921 Uniprot:F1NA64
Length = 425
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 179/422 (42%), Positives = 261/422 (61%)
Query: 22 IKQVKLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
+ + +LERE+ELR EV +++ LL G AE++GTEL TF K AVFTW+
Sbjct: 12 VAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAGAKVAVFTWHGC 71
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
T+++ G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD
Sbjct: 72 TVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEREDE------RGPRVMVVGPTDV 125
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKST+ R+LL++A +LG +PTFV+LD+GQG+++IPG + A IE P D EG L+ PLV
Sbjct: 126 GKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSLQAPLV 185
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FG TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA
Sbjct: 186 YHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHA 245
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
F+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIR
Sbjct: 246 ASAFEVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDDRIR 302
Query: 320 EYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQEL 379
EYFYG PHA FSD +Y++G P P S LP+G N L++VPV +++
Sbjct: 303 EYFYGFRGCFYPHAFDVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDM 361
Query: 380 LHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTW 438
+H +L+VS A D IS ++VAGFI VT VD +R+ T L+P+P LP +L+ + +
Sbjct: 362 VHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIRF 421
Query: 439 LE 440
++
Sbjct: 422 MD 423
>UNIPROTKB|Q5ZJL4 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9031 "Gallus gallus" [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0000214
"tRNA-intron endonuclease complex" evidence=ISS] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423 CTD:10978
eggNOG:COG5623 HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AJ720420
IPI:IPI00603182 RefSeq:NP_001012292.1 UniGene:Gga.2011
ProteinModelPortal:Q5ZJL4 STRING:Q5ZJL4 GeneID:423131
KEGG:gga:423131 InParanoid:Q5ZJL4 NextBio:20825645 Uniprot:Q5ZJL4
Length = 425
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 179/422 (42%), Positives = 261/422 (61%)
Query: 22 IKQVKLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
+ + +LERE+ELR EV +++ LL G AE++GTEL TF K AVFTW+
Sbjct: 12 VAKFELERETELRFEVEASQTVQMELLTGMAEVFGTELTRNKKFTFDAGAKVAVFTWHGC 71
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
T+++ G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD
Sbjct: 72 TVQLSGRTEVAYVSKDTPMLLYLNTHTALEQIRRQAEREDE------RGPRVMVVGPTDV 125
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKST+ R+LL++A +LG +PTFV+LD+GQG+++IPG + A IE P D EG L+ PLV
Sbjct: 126 GKSTVCRLLLNYAVRLGRRPTFVELDVGQGSVSIPGTMGALYIERPADVEEGFSLQAPLV 185
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FG TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA
Sbjct: 186 YHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHA 245
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
F+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIR
Sbjct: 246 ASAFEVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDDRIR 302
Query: 320 EYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQEL 379
EYFYG PHA FSD +Y++G P P S LP+G N L++VPV +++
Sbjct: 303 EYFYGFRGCFYPHAFDVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDM 361
Query: 380 LHLVLAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTW 438
+H +L+VS A D IS ++VAGFI VT VD +R+ T L+P+P LP +L+ + +
Sbjct: 362 VHHLLSVSMADSPDDNISETSVAGFIVVTGVDLERQVFTVLSPAPRPLPKNFLLIMDIRF 421
Query: 439 LE 440
++
Sbjct: 422 MD 423
>UNIPROTKB|Q92989 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9606 "Homo sapiens" [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IDA]
[GO:0051733 "polydeoxyribonucleotide kinase activity" evidence=IDA]
[GO:0051736 "ATP-dependent polyribonucleotide 5'-hydroxyl-kinase
activity" evidence=IDA] [GO:0005524 "ATP binding" evidence=TAS]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=IDA] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] Reactome:REACT_71
GO:GO:0005524 GO:GO:0005654 EMBL:CH471076 Reactome:REACT_1675
GO:GO:0035087 GO:GO:0030423 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 CTD:10978 eggNOG:COG5623
HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF GO:GO:0000214
GO:GO:0046404 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:U73524 EMBL:AK300232
EMBL:AK313007 EMBL:BC000446 IPI:IPI00024381 IPI:IPI00908312
RefSeq:NP_001136069.1 RefSeq:NP_006822.1 UniGene:Hs.523687
ProteinModelPortal:Q92989 SMR:Q92989 IntAct:Q92989 STRING:Q92989
PhosphoSite:Q92989 DMDM:13431366 PaxDb:Q92989 PRIDE:Q92989
DNASU:10978 Ensembl:ENST00000302731 Ensembl:ENST00000525602
Ensembl:ENST00000533682 GeneID:10978 KEGG:hsa:10978 UCSC:uc001nkw.3
UCSC:uc010rjw.2 GeneCards:GC11P057425 HGNC:HGNC:16999 MIM:608757
neXtProt:NX_Q92989 PharmGKB:PA162382477 HOVERGEN:HBG000921
InParanoid:Q92989 PhylomeDB:Q92989 Reactome:REACT_78
GenomeRNAi:10978 NextBio:41710 ArrayExpress:Q92989 Bgee:Q92989
CleanEx:HS_CLP1 Genevestigator:Q92989 GermOnline:ENSG00000172409
Uniprot:Q92989
Length = 425
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|Q4R7R3 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9541 "Macaca fascicularis" [GO:0000214 "tRNA-intron
endonuclease complex" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AB168751
ProteinModelPortal:Q4R7R3 SMR:Q4R7R3 PRIDE:Q4R7R3 Uniprot:Q4R7R3
Length = 425
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSVQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>MGI|MGI:2138968 [details] [associations]
symbol:Clp1 "CLP1, cleavage and polyadenylation factor I
subunit" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISO]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=ISO] [GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=ISO] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISO] MGI:MGI:2138968 GO:GO:0005524 GO:GO:0006397
GO:GO:0035087 GO:GO:0030423 CTD:10978 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP OrthoDB:EOG4K0QNF GO:GO:0000214 GO:GO:0046404
GO:GO:0051736 GO:GO:0051733 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 HOVERGEN:HBG000921 EMBL:AK077647 EMBL:BC003237
IPI:IPI00116934 RefSeq:NP_598601.1 UniGene:Mm.21583
ProteinModelPortal:Q99LI9 SMR:Q99LI9 IntAct:Q99LI9 STRING:Q99LI9
PhosphoSite:Q99LI9 PRIDE:Q99LI9 DNASU:98985
Ensembl:ENSMUST00000028475 Ensembl:ENSMUST00000165219 GeneID:98985
KEGG:mmu:98985 InParanoid:Q99LI9 NextBio:353735 Bgee:Q99LI9
Genevestigator:Q99LI9 GermOnline:ENSMUSG00000027079 Uniprot:Q99LI9
Length = 425
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>RGD|1307679 [details] [associations]
symbol:Clp1 "cleavage and polyadenylation factor I subunit 1"
species:10116 "Rattus norvegicus" [GO:0000214 "tRNA-intron
endonuclease complex" evidence=ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISO;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO;ISS]
[GO:0035087 "siRNA loading onto RISC involved in RNA interference"
evidence=ISO;ISS] [GO:0046404 "ATP-dependent
polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA]
[GO:0051733 "polydeoxyribonucleotide kinase activity"
evidence=ISO;ISS] [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=ISO;ISS] RGD:1307679
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
EMBL:CH473949 CTD:10978 eggNOG:COG5623 GeneTree:ENSGT00390000000344
HOGENOM:HOG000231935 KO:K14399 OMA:GFSVQAP OrthoDB:EOG4K0QNF
GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:BC087130
IPI:IPI00193975 RefSeq:NP_001009599.1 UniGene:Rn.144332
ProteinModelPortal:Q5PQL4 SMR:Q5PQL4 STRING:Q5PQL4
Ensembl:ENSRNOT00000009726 GeneID:311166 KEGG:rno:311166
UCSC:RGD:1307679 InParanoid:Q5PQL4 NextBio:663086
Genevestigator:Q5PQL4 Uniprot:Q5PQL4
Length = 425
Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGYGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDVEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|A2VE01 [details] [associations]
symbol:CLP1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:9913 "Bos taurus" [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0006388
"tRNA splicing, via endonucleolytic cleavage and ligation"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
[GO:0051733 "polydeoxyribonucleotide kinase activity" evidence=ISS]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=ISS]
[GO:0046404 "ATP-dependent polydeoxyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423
EMBL:BC133499 IPI:IPI00689141 RefSeq:NP_001075182.1
UniGene:Bt.15752 ProteinModelPortal:A2VE01 STRING:A2VE01
Ensembl:ENSBTAT00000008507 GeneID:506507 KEGG:bta:506507 CTD:10978
eggNOG:COG5623 GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935
InParanoid:A2VE01 KO:K14399 OMA:GFSVQAP OrthoDB:EOG4K0QNF
NextBio:20867633 GO:GO:0000214 GO:GO:0046404 GO:GO:0051736
GO:GO:0051733 GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807
Uniprot:A2VE01
Length = 425
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|E2R321 [details] [associations]
symbol:CLP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=IEA] [GO:0035087
"siRNA loading onto RISC involved in RNA interference"
evidence=IEA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 CTD:10978 GeneTree:ENSGT00390000000344
KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:AAEX03011434
RefSeq:XP_852672.1 Ensembl:ENSCAFT00000012481 GeneID:610161
KEGG:cfa:610161 NextBio:20895728 Uniprot:E2R321
Length = 425
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|F2Z5N4 [details] [associations]
symbol:CLP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051736 "ATP-dependent polyribonucleotide
5'-hydroxyl-kinase activity" evidence=IEA] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=IEA] [GO:0035087
"siRNA loading onto RISC involved in RNA interference"
evidence=IEA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IEA] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=IEA]
[GO:0000214 "tRNA-intron endonuclease complex" evidence=IEA]
GO:GO:0035087 GO:GO:0030423 GeneTree:ENSGT00390000000344 KO:K14399
OMA:GFSVQAP GO:GO:0000214 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:CU914175 RefSeq:XP_003122764.1
UniGene:Ssc.18662 ProteinModelPortal:F2Z5N4
Ensembl:ENSSSCT00000014399 GeneID:100520541 KEGG:ssc:100520541
Uniprot:F2Z5N4
Length = 425
Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
Identities = 175/418 (41%), Positives = 261/418 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR EV ++L LL G AEI+GTEL TF K AVFTW+ ++++
Sbjct: 16 ELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAGAKVAVFTWHGCSLQL 75
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G E Y + +TPM+ Y+N + LE R +GPRV+VVGPTD GKST
Sbjct: 76 SGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEE------RGPRVMVVGPTDVGKST 129
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
+ R+LL++A +LG +PT+V+LD+GQG+++IPG + A IE P D EG ++ PLVY FG
Sbjct: 130 VCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSIQAPLVYHFG 189
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY + LA + ++ N + +G VINT GW++G GY+ L+HA F
Sbjct: 190 STTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQALVHAASAF 249
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VV+VL QE+L++ L+ ++ P+ V V L KSGGVV R+ R++ R RIREYFY
Sbjct: 250 EVDVVVVLDQERLYNELK---RDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFY 306
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G PHA FSD +Y++G P P S LP+G N L++VPV ++++H +
Sbjct: 307 GFRGCFYPHAFNVKFSDVKIYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMVHHL 365
Query: 384 LAVSYAKDADQIIS-SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+VS A+ ++ +S ++VAGFI VT+VD + + T L+P+P LP +L+ + +++
Sbjct: 366 LSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMD 423
>UNIPROTKB|Q66JK4 [details] [associations]
symbol:clp1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0000214
"tRNA-intron endonuclease complex" evidence=ISS] [GO:0006388 "tRNA
splicing, via endonucleolytic cleavage and ligation" evidence=ISS]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=ISS] [GO:0035087 "siRNA loading onto RISC
involved in RNA interference" evidence=ISS] [GO:0051733
"polydeoxyribonucleotide kinase activity" evidence=ISS] [GO:0051736
"ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity"
evidence=ISS] GO:GO:0005524 GO:GO:0006397 GO:GO:0035087
GO:GO:0030423 CTD:10978 eggNOG:COG5623 GeneTree:ENSGT00390000000344
HOGENOM:HOG000231935 KO:K14399 OrthoDB:EOG4K0QNF GO:GO:0000214
GO:GO:0046404 GO:GO:0051736 GO:GO:0051733 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 EMBL:CR848531 EMBL:BC080880
RefSeq:NP_001008002.1 UniGene:Str.3967 ProteinModelPortal:Q66JK4
STRING:Q66JK4 Ensembl:ENSXETT00000015427 GeneID:493364
KEGG:xtr:493364 Xenbase:XB-GENE-1008970 InParanoid:Q66JK4
OMA:GENQWER Bgee:Q66JK4 Uniprot:Q66JK4
Length = 437
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 172/420 (40%), Positives = 263/420 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR+EV G P+R+ L++G AE++GTEL TFPP + A+FTW+ T+++
Sbjct: 26 ELERETELRLEVEGTDPVRVELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTWHGCTVQL 85
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G+P+ Y + +TPM+ Y+N LE R +GPRV+V GP+D GKST
Sbjct: 86 WGSPDVAYVSRDTPMLLYLNTQVGLEQMR------AQAEREGERGPRVLVAGPSDVGKST 139
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
L R+LL++A + G +PT V+LD+GQG++++PG + A +E P D EG + PLVY FG
Sbjct: 140 LCRLLLNYAVRRGRRPTLVELDVGQGSVSVPGTVGALCVERPADVEEGFSAQAPLVYHFG 199
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY L LA + + + N + +G +INT GW++G GY+ L+HA F
Sbjct: 200 STTPGTNIKLYNKLTSRLAHVFNLRCDSNRRASVSGCLINTCGWVKGSGYQALIHAASAF 259
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VVLVL QE+L++ D+L++ P+ V + L KSGG R+ + R+++R R+REYFY
Sbjct: 260 EVDVVLVLDQERLYN---DLLRDLPHFVRTLLLPKSGGASERSKECRRESRDQRVREYFY 316
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G L PHA FS+ VY++G P P S LP+G N L++VPV +++ H +
Sbjct: 317 GPRGSLYPHAFEIKFSEVRVYKVGA-PSIPDSCLPLGMSQEDNQLKLVPVTPGRDMAHHL 375
Query: 384 LAVSYAKD--ADQIISS-NVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+V A++ I +VAGFI +T VDT+R+T+T L+P+P LP L+ + +++
Sbjct: 376 LSVVPLDGGGAEEGIEERSVAGFIVITGVDTERQTLTVLSPAPRPLPKCVLLIMDIRFMD 435
>UNIPROTKB|Q6NS21 [details] [associations]
symbol:clp1 "Polyribonucleotide 5'-hydroxyl-kinase Clp1"
species:8355 "Xenopus laevis" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0006388 "tRNA splicing, via
endonucleolytic cleavage and ligation" evidence=ISS] [GO:0030423
"targeting of mRNA for destruction involved in RNA interference"
evidence=ISS] [GO:0035087 "siRNA loading onto RISC involved in RNA
interference" evidence=ISS] [GO:0051733 "polydeoxyribonucleotide
kinase activity" evidence=ISS] [GO:0051736 "ATP-dependent
polyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0006397 GO:GO:0035087 GO:GO:0030423 CTD:10978
KO:K14399 GO:GO:0000214 GO:GO:0046404 GO:GO:0051736 GO:GO:0051733
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 EMBL:BC070530
RefSeq:NP_001084787.1 UniGene:Xl.30457 ProteinModelPortal:Q6NS21
IntAct:Q6NS21 GeneID:431824 KEGG:xla:431824 Xenbase:XB-GENE-1008976
Uniprot:Q6NS21
Length = 439
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 172/420 (40%), Positives = 263/420 (62%)
Query: 26 KLERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
+LERE+ELR+EV G P+R+ L++G AE++GTEL TFPP + A+FTW+ T+++
Sbjct: 28 ELERETELRLEVEGTDPVRVELVSGLAEVFGTELTRNKKYTFPPGSRAAIFTWHGCTVQL 87
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G+P+ Y + +TPM+ Y+N LE R +GPRV+V GP+D GKST
Sbjct: 88 WGSPDMAYVSRDTPMLLYLNTQVGLEQMR------VQAEREGERGPRVLVAGPSDVGKST 141
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
L R+LL++A + G +PT V+LD+GQG++++PG + A +E P D EG + PLVY FG
Sbjct: 142 LCRLLLNYAVRRGRRPTLVELDVGQGSVSVPGTMGALCVERPADVEEGFSAQAPLVYHFG 201
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
TP N++LY L LA + + + N + +G +INT GW++G GY+ L+HA F
Sbjct: 202 STTPGTNIKLYNKLTSRLAHVFNLRCDSNRRASVSGCLINTCGWVKGSGYQALIHAASAF 261
Query: 265 KANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
+ +VVLVL QE+L++ D+L++ P+ V + L KSGG R+ + R+++R R+REYFY
Sbjct: 262 EVDVVLVLDQERLYN---DLLRDLPHFVRTLLLPKSGGASERSKECRRESRDQRVREYFY 318
Query: 324 GLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLV 383
G L PHA FS+ VY++G P P S LP+G N L++VPV +++ H +
Sbjct: 319 GPRGSLYPHAFEIKFSEVRVYKVGA-PTIPDSCLPLGMSQEDNQLKLVPVTPGRDMAHHL 377
Query: 384 LAVSYAK--DADQIISS-NVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440
L+V A++ I +VAGFI +T VDT+R+T+T L+P+P LP L+ + +++
Sbjct: 378 LSVVPLDGGSAEEGIEERSVAGFIVITGVDTERQTLTLLSPAPRPLPKCVLLIMDIRFMD 437
>UNIPROTKB|B4MRZ9 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7260 "Drosophila
willistoni" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH963850
eggNOG:COG5623 KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_002063902.1 STRING:B4MRZ9 EnsemblMetazoa:FBtr0246572
GeneID:6640990 KEGG:dwi:Dwil_GK15921 FlyBase:FBgn0217923
InParanoid:B4MRZ9 Uniprot:B4MRZ9
Length = 425
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 172/411 (41%), Positives = 246/411 (59%)
Query: 27 LERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
LE +SELR E+ + +++ L+NG AE++GTEL + F K A+FT+ + +
Sbjct: 13 LESDSELRFEIEQKDVKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGCVLHV 72
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G + Y + ETPMV YVN +A LE R GP +VVGP D GKST
Sbjct: 73 QGKMDVCYVSKETPMVQYVNCHAALEQFRQEAEEKDAC------GPVAMVVGPMDVGKST 126
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
L R+LL++A ++G +P + D+D+GQGAI IPG +A IE P EG P PLVY FG
Sbjct: 127 LCRILLNYAVRVGRRPLYADIDVGQGAIAIPGNVATILIERPASIEEGFPKTAPLVYHFG 186
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
H +PS N LY +V ++A++ +GN ++++G+++NT GW++G GY LLHA +
Sbjct: 187 HKSPSGNSVLYNAVVSKMAEVTLNSLSGNKRTQSSGIIVNTCGWVKGSGYAHLLHAARAY 246
Query: 265 KANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
A + VL QE+L++ +LRDV PNV VV L KSGGVV R+ ++R ++R RI+EYFY
Sbjct: 247 GAKAIFVLDQERLYNELLRDV---PPNVHVVLLPKSGGVVERSKELRHESRDQRIKEYFY 303
Query: 324 G-LTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHL 382
G + P + F D +Y+IG P P S +PIG N ++V V Q LLH
Sbjct: 304 GNIRAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTQSLLHH 362
Query: 383 VLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
+LA+S+A++ D +I +NVAGF VTNVD R+ + L+P P LP L+
Sbjct: 363 ILALSFAENTDDDVIGTNVAGFCCVTNVDMDRQAVMLLSPQPRPLPPNALL 413
>UNIPROTKB|B4KML2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7230 "Drosophila
mojavensis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH933808
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002006924.1
EnsemblMetazoa:FBtr0172061 GeneID:6581179 KEGG:dmo:Dmoj_GI21336
FlyBase:FBgn0144066 InParanoid:B4KML2 Uniprot:B4KML2
Length = 425
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 164/415 (39%), Positives = 250/415 (60%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K+ L+ +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 9 KEYILDADSELRFEIEQKDAKVFVTLISGFAELFGTELVKKKKYEFGIGAKVAIFTYQGC 68
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+++ G + Y + ETPM+ Y+N +A LE R +GP ++VVGP D
Sbjct: 69 VLQVTGKMDVCYISKETPMIQYINCHAALEQFRTDAEEHDK------RGPVILVVGPMDV 122
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQGAI+IPG IA IE P EG PLV
Sbjct: 123 GKSTLCRILLNYAVRVGRRPLYADLDVGQGAISIPGNIATILIERPASVEEGFAKTAPLV 182
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ + + N ++++G+++NT GW++G GY+ LLHA
Sbjct: 183 YHFGHKSPSGNSVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGYGYKHLLHA 242
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRP-NVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
++A + VL QE+L++ D+L++ P NV VV L KSGGVV R ++R ++R RI+
Sbjct: 243 ARAYRARAIFVLDQERLYN---DLLRDVPSNVHVVLLPKSGGVVERTKELRHESREQRIK 299
Query: 320 EYFYG-LTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG + P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 300 EYFYGNMRTPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKKKVVAVTPTSS 358
Query: 379 LLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
LLH +L +S+A+ D+ +I +NVAGF VT VD +R+++ L+P P LP L+
Sbjct: 359 LLHHILTLSFAESTDENVIGTNVAGFCCVTEVDMERQSVMLLSPQPRPLPPNALL 413
>UNIPROTKB|B4GGT6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7234 "Drosophila
persimilis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH479183
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002017867.1
EnsemblMetazoa:FBtr0182686 GeneID:6592646 KEGG:dpe:Dper_GL17071
FlyBase:FBgn0154675 Uniprot:B4GGT6
Length = 425
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 168/411 (40%), Positives = 242/411 (58%)
Query: 27 LERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
LE +SELR E+ + ++ L+NG AE++GTEL + F K A+FT+ + +
Sbjct: 13 LEADSELRFEIEQKDAKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGCVLHV 72
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G + Y + ETPMV YVN +A LE R +GP +VVGPTD GKST
Sbjct: 73 TGKMDVCYISKETPMVQYVNCHAALEQFRTEAEEKDR------RGPVAMVVGPTDVGKST 126
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
L R+LL++A ++G +P + DLD+GQGAI I G +A IE P EG P PLVY FG
Sbjct: 127 LCRILLNYAVRVGRRPLYADLDVGQGAIAISGNVATILIERPASVEEGFPKTAPLVYHFG 186
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
H +PS N LY +V ++A++ + NGN ++++G+++NT GW++G GY LLHA +
Sbjct: 187 HKSPSGNSVLYNAVVSKMAEVTLQSLNGNKRTKSSGIIVNTCGWVKGHGYAHLLHAARAY 246
Query: 265 KANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
A + VL QE+L++ +LRDV + V VV L KSGGVV R+ ++R + R RI+EYFY
Sbjct: 247 GACAIFVLDQERLYNELLRDVPSS---VHVVLLPKSGGVVERSKELRHECRDQRIKEYFY 303
Query: 324 GLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHL 382
G P + F + +Y+IG P P S +PIG N ++V V L+H
Sbjct: 304 GNARAPFYPFSFEVKFQELRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHH 362
Query: 383 VLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
VLA+S+A+ D +I +N+AGF VT VD +R+ + L+P P LP L+
Sbjct: 363 VLALSFAESVDDDVIGTNIAGFCCVTEVDMERQVVMLLSPQPRPLPPNALL 413
>UNIPROTKB|Q28ZT4 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:46245 "Drosophila
pseudoobscura pseudoobscura" [GO:0000214 "tRNA-intron endonuclease
complex" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006388 "tRNA splicing, via endonucleolytic
cleavage and ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397
EMBL:CM000071 GenomeReviews:CM000071_GR eggNOG:COG5623 KO:K14399
OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_001360953.1
ProteinModelPortal:Q28ZT4 GeneID:4804382 KEGG:dpo:Dpse_GA19268
FlyBase:FBgn0079265 InParanoid:Q28ZT4 Uniprot:Q28ZT4
Length = 425
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 168/411 (40%), Positives = 242/411 (58%)
Query: 27 LERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEM 84
LE +SELR E+ + ++ L+NG AE++GTEL + F K A+FT+ + +
Sbjct: 13 LEADSELRFEIEQKDAKVLVTLVNGFAELFGTELVKKKKYEFGMGAKVAIFTYQGCVLHV 72
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
G + Y + ETPMV YVN +A LE R +GP +VVGPTD GKST
Sbjct: 73 TGKMDVCYISKETPMVQYVNCHAALEQFRTEAEEKDR------RGPVAMVVGPTDVGKST 126
Query: 145 LSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204
L R+LL++A ++G +P + DLD+GQGAI I G +A IE P EG P PLVY FG
Sbjct: 127 LCRILLNYAVRVGRRPLYADLDVGQGAIAISGNVATILIERPASVEEGFPKTAPLVYHFG 186
Query: 205 HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTF 264
H +PS N LY +V ++A++ + NGN ++++G+++NT GW++G GY LLHA +
Sbjct: 187 HKSPSGNSVLYNAVVSKMAEVTLQSLNGNKRTKSSGIIVNTCGWVKGHGYAHLLHAARAY 246
Query: 265 KANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFY 323
A + VL QE+L++ +LRDV + V VV L KSGGVV R+ ++R + R RI+EYFY
Sbjct: 247 GACAIFVLDQERLYNELLRDVPSS---VHVVLLPKSGGVVERSKELRHECRDQRIKEYFY 303
Query: 324 GLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHL 382
G P + F + +Y+IG P P S +PIG N ++V V L+H
Sbjct: 304 GNARAPFYPFSFEVKFQELRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPALIHH 362
Query: 383 VLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
VLA+S+A+ D +I +N+AGF VT VD +R+ + L+P P LP L+
Sbjct: 363 VLALSFAESVDDDVIGTNIAGFCCVTEVDMERQVVMLLSPQPRPLPPNALL 413
>FB|FBgn0033842 [details] [associations]
symbol:cbc "crowded by cid" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0022008 "neurogenesis" evidence=IMP] EMBL:AE013599
GO:GO:0005524 GO:GO:0022008 GO:GO:0006397 eggNOG:COG5623
GeneTree:ENSGT00390000000344 KO:K14399 OMA:GFSVQAP GO:GO:0000214
GO:GO:0006388 InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
EMBL:AY061187 RefSeq:NP_610876.1 UniGene:Dm.601
ProteinModelPortal:Q7K284 SMR:Q7K284 STRING:Q7K284 PaxDb:Q7K284
PRIDE:Q7K284 EnsemblMetazoa:FBtr0087701 GeneID:36494
KEGG:dme:Dmel_CG5970 UCSC:CG5970-RA CTD:36494 FlyBase:FBgn0033842
InParanoid:Q7K284 PhylomeDB:Q7K284 GenomeRNAi:36494 NextBio:798847
Bgee:Q7K284 Uniprot:Q7K284
Length = 423
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 170/415 (40%), Positives = 242/415 (58%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 7 KDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGC 66
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV YVN +A LE R GP +VVGP D
Sbjct: 67 VLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRY------GPVAMVVGPMDV 120
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQG+I I G +A IE P + EG PLV
Sbjct: 121 GKSTLCRILLNYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLV 180
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ + N N ++++G++INT GW++G GY LLHA
Sbjct: 181 YHFGHKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHA 240
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV K V VV L KSGGVV R+ ++R +AR RI+
Sbjct: 241 AKAYGACAIFVLDQERLYNELLRDVPKG---VHVVLLPKSGGVVERSKELRHEARDQRIK 297
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG T P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 298 EYFYGNTRAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPA 356
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H VLA+S+A+ D +I +NVAGF VT VD +R+ + L+P P LP L+
Sbjct: 357 LIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALL 411
>UNIPROTKB|B4QEE3 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7240 "Drosophila
simulans" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CM000362
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002081348.1
EnsemblMetazoa:FBtr0225667 GeneID:6734325 KEGG:dsi:Dsim_GD25757
FlyBase:FBgn0197038 Uniprot:B4QEE3
Length = 423
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 170/415 (40%), Positives = 242/415 (58%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 7 KDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGC 66
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV YVN +A LE R GP +VVGP D
Sbjct: 67 VLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRY------GPVAMVVGPMDV 120
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQG+I I G +A IE P + EG PLV
Sbjct: 121 GKSTLCRILLNYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLV 180
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ + N N ++++G++INT GW++G GY LLHA
Sbjct: 181 YHFGHKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHA 240
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV K V VV L KSGGVV R+ ++R +AR RI+
Sbjct: 241 AKAYGACAIFVLDQERLYNELLRDVPKG---VHVVLLPKSGGVVERSKELRHEARDQRIK 297
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG T P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 298 EYFYGNTRAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPA 356
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H VLA+S+A+ D +I +NVAGF VT VD +R+ + L+P P LP L+
Sbjct: 357 LIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALL 411
>UNIPROTKB|B4JVN0 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7222 "Drosophila
grimshawi" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH916375
eggNOG:COG5623 KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_001995426.1 STRING:B4JVN0 EnsemblMetazoa:FBtr0158565
GeneID:6568947 KEGG:dgr:Dgri_GH23151 FlyBase:FBgn0130608
InParanoid:B4JVN0 Uniprot:B4JVN0
Length = 425
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 163/415 (39%), Positives = 245/415 (59%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
++ LE +SELR E+ + ++ LL G AE++GTEL + F K A+FT+
Sbjct: 9 REYTLEADSELRFEIEQKNAKVLVTLLTGFAELFGTELVKKKKYEFGVGAKVAIFTYQGC 68
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
I + G + Y + ETPMV Y+N +A LE R +GP V++VGP D
Sbjct: 69 VIHVSGQMDVCYISKETPMVQYINCHAALEQFR------LEAEQRDKRGPSVLIVGPMDV 122
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQGAI++ G +A IE P +G PLV
Sbjct: 123 GKSTLCRILLNYAVRVGRRPLYADLDVGQGAISVAGNVATILIERPASIEDGFAKTAPLV 182
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ + + N ++++G+++NT GW++G GYE LLHA
Sbjct: 183 YHFGHKSPSGNSVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGSGYEHLLHA 242
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRP-NVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
++A + VL QE+L++ D+L++ P NV VV L KSGGVV R+ +R ++R RI+
Sbjct: 243 ARAYRARAIFVLDQERLYN---DLLRDVPANVHVVLLPKSGGVVERSKGLRHESREQRIK 299
Query: 320 EYFYG-LTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 300 EYFYGNARTPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKKKVVAVTATPA 358
Query: 379 LLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
LLH +L +S+A+ D +I +N+AGF VT VD +R+++ L+P P LP L+
Sbjct: 359 LLHHILTLSFAESTDDDVIGTNIAGFCCVTEVDMERQSVMLLSPQPRPLPPNALL 413
>UNIPROTKB|B4MCL6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7244 "Drosophila
virilis" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 eggNOG:COG5623
KO:K14399 OMA:GFSVQAP GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ EMBL:CH940659
RefSeq:XP_002058869.1 STRING:B4MCL6 EnsemblMetazoa:FBtr0235606
GeneID:6635342 KEGG:dvi:Dvir_GJ19681 FlyBase:FBgn0206823
InParanoid:B4MCL6 Uniprot:B4MCL6
Length = 425
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 164/415 (39%), Positives = 245/415 (59%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
++ LE +SELR E+ + ++ L+ G AE++GTEL + F K A+FT+
Sbjct: 9 REYVLEADSELRFEIEQKDAKVLVTLVTGFAELFGTELVKKKKYEFGVGAKVAIFTYQGC 68
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV Y+N +A LE R +GP V++VGP D
Sbjct: 69 VLHVSGKMDVCYISKETPMVQYINCHAALEQFRMEAEERDK------RGPVVLIVGPMDV 122
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQGAI+I G +A IE P EG PLV
Sbjct: 123 GKSTLCRILLNYAVRVGRRPLYADLDVGQGAISISGNVATILIERPASVEEGFTKTAPLV 182
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +P N LY +V ++A++ + + N ++++G+++NT GW++G GY LLHA
Sbjct: 183 YHFGHKSPGANNVLYNAVVSKMAEVTLQSLDANKRTKSSGIIVNTCGWVKGSGYAHLLHA 242
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRP-NVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
++A V VL QE+L++ D+L++ P NV VV L KSGGVV R+ ++R ++R R++
Sbjct: 243 ARAYRARAVFVLDQERLYN---DLLRDVPSNVHVVLLPKSGGVVERSKELRHESREQRVK 299
Query: 320 EYFYGLTND-LSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG T P + F D +Y+IG P P S +PIG N ++VPV
Sbjct: 300 EYFYGNTRTPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKKKVVPVTPTPS 358
Query: 379 LLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
LLH +L +S+A+ D +I +NVAGF VT VD R+++ L+P P LP L+
Sbjct: 359 LLHHILTLSFAESTDDDVIGTNVAGFCCVTEVDMDRQSVMLLSPQPRPLPPNALL 413
>WB|WBGene00010304 [details] [associations]
symbol:clpf-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040015 "negative regulation of multicellular
organism growth" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006397
GO:GO:0040035 GO:GO:0040015 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 EMBL:Z34801 PIR:T22973
RefSeq:NP_001040858.1 ProteinModelPortal:P52874 SMR:P52874
DIP:DIP-27405N IntAct:P52874 MINT:MINT-1083690 STRING:P52874
PaxDb:P52874 EnsemblMetazoa:F59A2.4a GeneID:175442
KEGG:cel:CELE_F59A2.4 UCSC:F59A2.4a CTD:175442 WormBase:F59A2.4a
InParanoid:P52874 NextBio:888178 ArrayExpress:P52874 Uniprot:P52874
Length = 428
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 158/423 (37%), Positives = 248/423 (58%)
Query: 22 IKQVKLERESELRIEVGE-MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
+++ L+ + ELR G+ + L L+ G AEI+GTEL TFP + + A FTW A
Sbjct: 6 VQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPAKSRVAAFTWKGA 65
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
TIE+ GT E+ Y A+ TPMV Y+N++A +E R +GPR+++VGPTD
Sbjct: 66 TIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREEQAAGNSNKAKGPRLLLVGPTDV 125
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GK+T+SR+L +++ + G P FV+LD+GQ ++++PG +AA ++ D ++G P+V
Sbjct: 126 GKTTVSRILCNYSVRQGRTPIFVELDVGQNSVSVPGTVAAVLVQKTADVIDGFERNQPIV 185
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
+ FGH +PS N+ LY+ L KE+A L Q N E++ GM+INT GW++G GY+ ++ A
Sbjct: 186 FNFGHTSPSANLSLYEALFKEMATTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKA 245
Query: 261 IDTFKANVVLVLGQEKLFSMLRDVLKNRPN-VDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
F+ +VV+VL E+L+S D+ K P V + + KSGGV R ++R K R +
Sbjct: 246 ASAFEVDVVIVLDHERLYS---DLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVH 302
Query: 320 EYFYGL-TNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
YFYG N+L P +F D + +IG Q P S LP G + + ++V + +
Sbjct: 303 RYFYGTRANNLYPFTFDVSFDDVTLCKIGA-EQLPDSCLPFGMEVENHETKLVIMEPSAD 361
Query: 379 LLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLT 437
+ H + A S + AD+ ++ S V GF VT VD +++T++ L P +PSK L+ +T
Sbjct: 362 IKHHLFAFSRSTKADENVLKSPVFGFCLVTEVDLEKRTMSILCPQR-TIPSKVLVFSDIT 420
Query: 438 WLE 440
L+
Sbjct: 421 HLD 423
>UNIPROTKB|B4HQJ2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7238 "Drosophila
sechellia" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH480816
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_002033714.1
EnsemblMetazoa:FBtr0203260 GeneID:6609009 KEGG:dse:Dsec_GM20275
FlyBase:FBgn0175158 Uniprot:B4HQJ2
Length = 423
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 169/415 (40%), Positives = 241/415 (58%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 7 KDYTLESDSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGC 66
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV YVN +A LE R GP +VVGP D
Sbjct: 67 VLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDRY------GPVAMVVGPMDV 120
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQG+I I G +A IE P + EG PLV
Sbjct: 121 GKSTLCRILLNYAVRVGRRPLYADLDVGQGSIAISGSVATILIERPANVEEGFAKTAPLV 180
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ + N N ++++G++INT GW++G GY LLHA
Sbjct: 181 YHFGHKSPSGNSVLYNAVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHA 240
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV K V VV L KSGGVV R+ ++R +AR RI+
Sbjct: 241 AKAYGACAIFVLDQERLYNELLRDVPKE---VHVVLLPKSGGVVERSKELRHEARDQRIK 297
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 298 EYFYGNARAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPA 356
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H VLA+S+A+ D +I +NVAGF VT VD +R+ + L+P P LP L+
Sbjct: 357 LIHHVLALSFAESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALL 411
>UNIPROTKB|B4P4H2 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7245 "Drosophila
yakuba" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CM000158
eggNOG:COG5623 KO:K14399 GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4VHHNQ
RefSeq:XP_002090899.1 STRING:B4P4H2 EnsemblMetazoa:FBtr0259877
GeneID:6529944 KEGG:dya:Dyak_GE13359 FlyBase:FBgn0231038
Uniprot:B4P4H2
Length = 423
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 168/415 (40%), Positives = 241/415 (58%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 7 KDYTLEADSELRFEIEQKDAKVLVSLVSGFAELFGTELVKKKQYEFGMGAKVAIFTYQGC 66
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV YVN +A LE R GP +VVGP D
Sbjct: 67 VLHVSGKMDVCYISKETPMVQYVNCHAALEQFRMEAEEKDR------HGPVAMVVGPMDV 120
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQG+I I G +A IE P + EG PLV
Sbjct: 121 GKSTLCRILLNYAVRVGRRPLYADLDVGQGSIAIAGSVATILIERPANVEEGFAKTAPLV 180
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +PS N LY +V ++A++ N N ++++G+++NT GW++G GY LLHA
Sbjct: 181 YHFGHKSPSGNSILYNAVVSKMAEVTLHSLNSNKRTKSSGIIVNTCGWVKGSGYAHLLHA 240
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV K V VV L KSGGVV R+ ++R +AR RI+
Sbjct: 241 AKAYGACAIFVLDQERLYNELLRDVPKG---VHVVLLPKSGGVVERSKELRHEARDQRIK 297
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 298 EYFYGNARAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPA 356
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H VLA+S+A+ D++I +NVAGF VT VD +R+ + L+P P LP L+
Sbjct: 357 LIHHVLALSFAESVEDEVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALL 411
>UNIPROTKB|B3MGZ0 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7217 "Drosophila
ananassae" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH902619
eggNOG:COG5623 KO:K14399 GO:GO:0000214 GO:GO:0006388
InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_001961086.1 STRING:B3MGZ0
EnsemblMetazoa:FBtr0115882 GeneID:6494046 KEGG:dan:Dana_GF11182
FlyBase:FBgn0088222 InParanoid:B3MGZ0 OrthoDB:EOG4VHHNQ
Uniprot:B3MGZ0
Length = 425
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 165/415 (39%), Positives = 242/415 (58%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ + ++ L++G AE++GTEL + F K A+FT+
Sbjct: 9 KDYTLESDSELRFEIEQKDAKVLVTLISGFAELFGTELVKKKKYEFGVGAKVAIFTYQGC 68
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV Y+N +A LE R +GP +VVGP D
Sbjct: 69 VLHVSGKMDVCYISKETPMVQYLNCHAALEQFRTDAEDKDQ------RGPVAMVVGPMDV 122
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQGAI I G +A IE P +G P PLV
Sbjct: 123 GKSTLCRILLNYAVRVGRRPLYADLDVGQGAIAISGNVATILIERPASVEDGFPKTAPLV 182
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +P N LY +V ++A++ + N N ++++G++INT GW++G GY LLHA
Sbjct: 183 YHFGHKSPGGNSVLYNSVVSKMAEVTLQSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHA 242
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV + V+VV L KSGGVV R+ ++R ++R R++
Sbjct: 243 AQAYGACAIFVLDQERLYNELLRDVPQG---VNVVLLPKSGGVVERSKELRHESRDLRMK 299
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG P + F D +Y+IG P P S +PIG N ++V V
Sbjct: 300 EYFYGNPRAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPIGMKAEDNKTKVVAVTPTPA 358
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H +LA+S+A+ D +I SNVAGF VT VD +R+ + L+P P LP L+
Sbjct: 359 LIHHILALSFAESVEDDVIGSNVAGFCCVTEVDMERQAVMVLSPQPRPLPPNSLL 413
>UNIPROTKB|B3NRK6 [details] [associations]
symbol:cbc "Protein CLP1 homolog" species:7220 "Drosophila
erecta" [GO:0000214 "tRNA-intron endonuclease complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006388 "tRNA splicing, via endonucleolytic cleavage and
ligation" evidence=ISS] GO:GO:0005524 GO:GO:0006397 EMBL:CH954179
KO:K14399 GO:GO:0000214 GO:GO:0006388 InterPro:IPR010655
Pfam:PF06807 OrthoDB:EOG4VHHNQ RefSeq:XP_001975758.1
EnsemblMetazoa:FBtr0142542 GeneID:6549640 KEGG:der:Dere_GG22488
FlyBase:FBgn0114659 Uniprot:B3NRK6
Length = 423
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 164/415 (39%), Positives = 236/415 (56%)
Query: 23 KQVKLERESELRIEVGEMPLRL--RLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEA 80
K LE +SELR E+ ++ L++G AE++GTEL + F K A+FT+
Sbjct: 7 KDYTLEADSELRFEIEHKDAKVLVSLVSGFAELFGTELVKKKQYEFGVGAKVAIFTYQGC 66
Query: 81 TIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDS 140
+ + G + Y + ETPMV YVN + LE R GP +VVGP D
Sbjct: 67 VLHVSGKMDVCYISKETPMVQYVNCHTALEQFRMEAEEKDR------HGPVAMVVGPMDV 120
Query: 141 GKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200
GKSTL R+LL++A ++G +P + DLD+GQG+I I G +A IE P + EG PLV
Sbjct: 121 GKSTLCRILLNYAVRVGRRPLYADLDVGQGSIAISGNVATILIERPANVEEGFSKTAPLV 180
Query: 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHA 260
Y FGH +P N LY +V ++A++ N N ++++G++INT GW++G GY LLHA
Sbjct: 181 YHFGHKSPGANSILYNAVVSKMAEVTLHSLNSNKRTKSSGIIINTCGWVKGSGYAHLLHA 240
Query: 261 IDTFKANVVLVLGQEKLFS-MLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIR 319
+ A + VL QE+L++ +LRDV K V VV L KSGGVV R+ + R +AR R++
Sbjct: 241 AKAYGACAIFVLDQERLYNELLRDVPKG---VHVVLLPKSGGVVERSKEQRHEARDQRVK 297
Query: 320 EYFYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQE 378
EYFYG P + F D +Y+IG P P S +P+G N ++V V
Sbjct: 298 EYFYGNARAPFYPFSFEVKFQDLRLYKIGA-PPLPDSCMPLGMKAEDNKTKVVAVTPTPA 356
Query: 379 LLHLVLAVSYAKDA-DQIISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLI 432
L+H VLA+S+++ D +I +NVAGF VT VD +R+ + L+P P LP L+
Sbjct: 357 LIHHVLALSFSESVEDDVIGTNVAGFCCVTEVDMERQAVMLLSPQPRPLPPNALL 411
>POMBASE|SPAC22H10.05c [details] [associations]
symbol:SPAC22H10.05c "mRNA cleavage and
polyadenylation specificity factor complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISO] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006379 "mRNA cleavage" evidence=ISO] [GO:0031124 "mRNA 3'-end
processing" evidence=ISO] PomBase:SPAC22H10.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0006378 GO:GO:0006379
eggNOG:COG5623 HOGENOM:HOG000231935 KO:K14399 OMA:GFSVQAP
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N PIR:T38207
RefSeq:NP_593741.1 ProteinModelPortal:Q10299 STRING:Q10299
EnsemblFungi:SPAC22H10.05c.1 GeneID:2541907 KEGG:spo:SPAC22H10.05c
NextBio:20802994 GO:GO:0005849 Uniprot:Q10299
Length = 456
Score = 468 (169.8 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 115/355 (32%), Positives = 198/355 (55%)
Query: 22 IKQVKLERESELRIEVGEMPLRLRLLNGNAEIYGTELP--PEIWLTFPPRLKFAVFTWYE 79
+K++ + +E E R EV E +++RL++GNAE +GTEL P T R+K A++TW
Sbjct: 1 MKEIFIPKECEWRFEVDEPAIQIRLVSGNAEYFGTELALGPPYHFT---RVKGAIYTWQG 57
Query: 80 ATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTD 139
T+E++G P +Y A+ETPM +Y+N++ LEG R GP V ++GP
Sbjct: 58 CTLEVEGEPSVEYVAEETPMSTYLNLHFALEGLRLQAENAAANDESSY-GPCVCLIGPRS 116
Query: 140 SGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA--TPIELPIDPVEGI---- 193
GK+++ ++L S+A K P V+LD Q + +PG I+A L I +G
Sbjct: 117 CGKTSVLKILESYALKQSRHPICVNLDPTQPMLALPGSISAFHNATILDIQDADGFGAST 176
Query: 194 ---PL----EMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTM 246
P ++PLVY FG +P +N +LYK+ + LA + + + + ++R +G +++T
Sbjct: 177 STGPTHVLAKVPLVYNFGLDSPLDNPKLYKLSLSRLALAVHSRMSQSKDARVSGCLVDTS 236
Query: 247 GWIEGVG-YELLLHAIDT-FKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304
E Y+ +LH+I T F+ N+++VLG E+L+S ++ + + VVK+ SGG +
Sbjct: 237 SIQENAEKYQDILHSIITDFRINIIIVLGSERLYSSMKRKYADATWLSVVKVSSSGGCID 296
Query: 305 RNSKVRQKARSYRIREYFYGLTN-DLSPHANVANFSDFLVYRI-GGGPQAPRSAL 357
R + Q+ ++ I++YFYG LSP + + + + +VYR+ P+S++
Sbjct: 297 REEEWIQQFQARCIKQYFYGDDRMPLSPLSMIVDSTQLVVYRVLEASESGPKSSV 351
Score = 117 (46.2 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 26/65 (40%), Positives = 40/65 (61%)
Query: 379 LLHLVLAVS-YAKDADQ--IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGT 435
L + +LAVS +D D+ ++ S + G++FV++VD + +T L+P P LPS LI GT
Sbjct: 392 LQNSILAVSSVGEDEDEATVVDSCIIGYVFVSDVDDVKNRMTLLSPVPEQLPSNALIMGT 451
Query: 436 LTWLE 440
W E
Sbjct: 452 CKWQE 456
>ASPGD|ASPL0000054763 [details] [associations]
symbol:AN0161 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0006397 eggNOG:COG5623 HOGENOM:HOG000231935
KO:K14399 InterPro:IPR010655 Pfam:PF06807 EMBL:AACD01000005
RefSeq:XP_657765.1 GeneID:2875940 KEGG:ani:AN0161.2 OMA:WRFEVAF
OrthoDB:EOG4FFH9N Uniprot:Q5BH19
Length = 546
Score = 374 (136.7 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 95/305 (31%), Positives = 162/305 (53%)
Query: 24 QVKLERESELRIEVG-EMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATI 82
Q+ L SE R EV +R++LL G AE++GTEL P TF K A++TW+ T+
Sbjct: 24 QINLSAGSEWRFEVAFGTTVRVKLLTGTAELFGTELAPSQTYTFSGT-KAAIYTWHGCTL 82
Query: 83 E---------MDGTP-------------ETDYTADETPMVSYVNVNAVLEGRRNHXXXXX 120
E +DGT +++Y A+ETPMV Y NV+ LEG R
Sbjct: 83 EVSAGDAVSGLDGTTSASGRGGLGAGGCQSEYIAEETPMVEYANVHFALEGLR------A 136
Query: 121 XXXXXXXQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180
GPRV+++GP D+GK++LS++L ++A K+G +P V+LD +G +++PG ++A
Sbjct: 137 EAKASGRDGPRVLILGPEDAGKTSLSKILTAYAVKVGREPIVVNLDPTEGMLSVPGTVSA 196
Query: 181 TPIELPIDPVEG-----------IPLEMPLVYFFGHATPSN-NVELYKVLVKELAQMLER 228
T +D EG +P+++PLVYF+ P +++ +V LA +
Sbjct: 197 TAFRAMLDVEEGWGSSPMSGPSAVPVKLPLVYFYPIVNPLEAEGSVFRPIVSRLALSVMG 256
Query: 229 QFNGNAESRAAGMVINTMGWIEG--VG-YELLLHAIDTFKANVVLVLGQEKLFSMLRDVL 285
+ + +++ G++++T G + G E++ H + F +LV+G E+L+S++
Sbjct: 257 RMAEDEDAKETGIIVDTPGILSQSRAGALEMINHIVTEFSITTILVIGSERLYSLMMKSY 316
Query: 286 KNRPN 290
N+P+
Sbjct: 317 DNKPS 321
Score = 178 (67.7 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 42/154 (27%), Positives = 80/154 (51%)
Query: 186 PIDPVEGIPLEMPLVYFFGHATPSN-NVELYKVLVKELAQMLERQFNGNAESRAAGMVIN 244
P+ +P+++PLVYF+ P +++ +V LA + + + +++ G++++
Sbjct: 213 PMSGPSAVPVKLPLVYFYPIVNPLEAEGSVFRPIVSRLALSVMGRMAEDEDAKETGIIVD 272
Query: 245 TMGWIEG--VG-YELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPN----------- 290
T G + G E++ H + F +LV+G E+L+S++ N+P+
Sbjct: 273 TPGILSQSRAGALEMINHIVTEFSITTILVIGSERLYSLMMKSYDNKPSSSASSAASDER 332
Query: 291 VDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYG 324
+ VVKL KSGG V R++ + R +IR YF+G
Sbjct: 333 ISVVKLSKSGGCVDRDAAFMKAVRESQIRTYFFG 366
Score = 102 (41.0 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 367 PLRIVPVNVDQELLHLVLAVSYAKDAD---QIISSNVAGFIFVTNVDTQRKTITYLAPSP 423
PL+ VP L + +LA+++A +I ++ GF++V +VD++R I LAP
Sbjct: 464 PLKKVPGPAPSALANTLLAITHASPTSSPSEIRDASTMGFLYVADVDSERGKIRVLAPVG 523
Query: 424 GMLPSKYLIAG 434
G +PS+ +I G
Sbjct: 524 GRVPSRAIIWG 534
Score = 37 (18.1 bits), Expect = 4.6e-46, Sum P(3) = 4.6e-46
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 326 TN-DLSPHANVANFSDFLVY 344
TN LSPHA +F +Y
Sbjct: 385 TNVTLSPHAQQLDFDAIALY 404
>SGD|S000005776 [details] [associations]
symbol:CLP1 "Component of the cleavage and polyadenylation
factor I (CF I)" species:4932 "Saccharomyces cerevisiae"
[GO:0006378 "mRNA polyadenylation" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IPI] [GO:0006379 "mRNA cleavage"
evidence=IDA] [GO:0031124 "mRNA 3'-end processing" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] SGD:S000005776 GO:GO:0005524 EMBL:BK006948
GO:GO:0006378 GO:GO:0006379 eggNOG:COG5623
GeneTree:ENSGT00390000000344 HOGENOM:HOG000231935 KO:K14399
OMA:GFSVQAP InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N
GO:GO:0005849 EMBL:Z75158 EMBL:AY558048 PIR:S67147
RefSeq:NP_014893.1 PDB:2NPI PDBsum:2NPI ProteinModelPortal:Q08685
SMR:Q08685 DIP:DIP-1487N IntAct:Q08685 MINT:MINT-394953
STRING:Q08685 PaxDb:Q08685 PeptideAtlas:Q08685 EnsemblFungi:YOR250C
GeneID:854424 KEGG:sce:YOR250C CYGD:YOR250c
EvolutionaryTrace:Q08685 NextBio:976637 Genevestigator:Q08685
GermOnline:YOR250C Uniprot:Q08685
Length = 445
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 125/441 (28%), Positives = 219/441 (49%)
Query: 27 LERESELRIEV-GEMPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMD 85
+ + S+ +I++ E L +++ +G EI+GTEL + TF KF ++ E +
Sbjct: 28 IPKGSDWQIDLKAEGKLIVKVNSGIVEIFGTELAVDDEYTFQ-NWKFPIYAVEETELLWK 86
Query: 86 GTPETDYTADETP--MVSYV-NVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGK 142
T T P + Y+ N++ +LE R +GPRV++VG + +GK
Sbjct: 87 CPDLTTNTITVKPNHTMKYIYNLHFMLEKIR----------MSNFEGPRVVIVGGSQTGK 136
Query: 143 STLSRMLLSWAAKLG-WKPTFVDLDIGQGAITIPGCIAATPIELPID---PVEGIPL--- 195
++LSR L S+A K ++P +++LD Q T+PGCI+ATPI +D P G L
Sbjct: 137 TSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSG 196
Query: 196 ------EMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWI 249
+ P+V FG + N +LY + +L Q++ ++ + + + R +G +++T I
Sbjct: 197 ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS-I 255
Query: 250 EGVGYEL--LLHAIDTFKANVVLVLGQEK--LFSMLRDVL-KNRPNVDVVKLQKSGGVVS 304
+ L L H I+ N++LVL E L+ ++ N ++ + K GV +
Sbjct: 256 SQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVSA 315
Query: 305 RNSKVRQKARSYRIREYFYG-LTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADP 363
+ ++ + IREYFYG L LSP+A ++ D +++ P + D
Sbjct: 316 VDDVYKRSLQRTSIREYFYGSLDTALSPYAIGVDYEDLTIWK-------PSNVF----DN 364
Query: 364 VANPLRIVPVNVD-QELLHLVLAVSYA-KDADQ--IISSNVAGFIFVTNVDTQRKTITYL 419
+ + PV + L H ++A+++A + ADQ +I S + GF +T V+ +R+ + L
Sbjct: 365 EVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVL 424
Query: 420 APSPGMLPSKYLIAGTLTWLE 440
P PG LPSK +I + +LE
Sbjct: 425 LPVPGRLPSKAMILTSYRYLE 445
>UNIPROTKB|A4QQE0 [details] [associations]
symbol:CLP1 "Protein CLP1" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] GO:GO:0005634
GO:GO:0006397 EMBL:CM001236 eggNOG:COG5623 KO:K14399
InterPro:IPR010655 Pfam:PF06807 OrthoDB:EOG4FFH9N
RefSeq:XP_003719167.1 STRING:A4QQE0 GeneID:2678970
KEGG:mgr:MGG_08804 Uniprot:A4QQE0
Length = 455
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 114/435 (26%), Positives = 202/435 (46%)
Query: 27 LERESELRIEVGE-MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMD 85
LE E R V + + L G AE GTEL + T +K + +W+ A + ++
Sbjct: 23 LEPRQEYRFSVSHGASITITLTRGTAERDGTELALNVAYTLSG-VKSKILSWHGANLSIE 81
Query: 86 GTPETDYTA--DETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKS 143
G + + A D+ +++N++A L+ R GPRV+V G T G++
Sbjct: 82 GITDHESVAGPDDAANTAHLNLHAFLQRSREAAARNNGGGRSAPHGPRVLVAGKTGCGRT 141
Query: 144 TLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPID----------PVEG- 192
+L R L +WA + G +P VD D G+G +T+PG ++A +D P G
Sbjct: 142 SLVRTLAAWATRTGAQPMVVDADPGEGLLTLPGTLSAAVFGTVMDVASEGGWGAAPSSGP 201
Query: 193 --IPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIE 250
+P+++PLV+++G + +LYK +V ++ + + + R+AGM+I+T ++E
Sbjct: 202 SAVPVKLPLVFYYGRRRVEEDRDLYKGVVNSISSAISARAADDPAVRSAGMLIDTPPYVE 261
Query: 251 GVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVR 310
G G ++L+H + N+++ + L + L NV + S + ++S V
Sbjct: 262 GKGADVLIHIAEELNVNIIVTIDTPSLHTELTQRFSGVKNV--LGEHVSVVALDKSSGVM 319
Query: 311 QKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANP--L 368
++ + + A + S F ++ A ++ P +D A P L
Sbjct: 320 ERDEGFLQHMGEASIKEYFFGDAKIT-LSPF-TQQVAFDELAIYTS-PEASDYSAEPGAL 376
Query: 369 RIVPVNVDQELLHLVLAVSYAKDAD---QIISSNVAGFIFVTNVDTQRKTITYLAPSPGM 425
+P + E+ H VLA+ A D +I + V+GF++V VD +R+ + LAP G
Sbjct: 377 ERIPQPLP-EMAHWVLAMMDAAPNDPPHKIRYAPVSGFVYVAAVDKERRRMKILAPVSGR 435
Query: 426 LPSKYLIAGTLTWLE 440
L K L+ G W E
Sbjct: 436 LGDKPLVWGK--WPE 448
>CGD|CAL0000231 [details] [associations]
symbol:orf19.6931 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
CGD:CAL0000231 GO:GO:0005524 GO:GO:0005634 GO:GO:0042493
GO:GO:0006397 EMBL:AACQ01000148 EMBL:AACQ01000147 eggNOG:COG5623
KO:K14399 InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_712695.1
RefSeq:XP_712732.1 ProteinModelPortal:Q59ST8 STRING:Q59ST8
GeneID:3645628 GeneID:3645681 KEGG:cal:CaO19.14193
KEGG:cal:CaO19.6931 Uniprot:Q59ST8
Length = 489
Score = 274 (101.5 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 85/337 (25%), Positives = 160/337 (47%)
Query: 42 LRLRLLNGNAEIYGTELP--PEIWLTFPPRLKFAVFTWYEATIE------------MDGT 87
L+ ++L G EI GTEL EI L+ ++ T +A IE + +
Sbjct: 39 LKFKVLTGIVEINGTELANNTEIQLSGTKTYLYSPVT--DAVIEYVLVENKDDLSLVSAS 96
Query: 88 PE--TDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQ--GPRVIVVGPTDSGKS 143
E +Y +DE+ M S +N++ LE +R + Q GP+V+++G SGK+
Sbjct: 97 DEGFVEYLSDESNMDSILNLHMYLESKRQYTKDYNFSSSIDQQQSGPKVLIIGSKYSGKT 156
Query: 144 TLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIE--LPIDPVEGIPL------ 195
T+S++L ++A K+ P V+L G +PG + ATPI ++ G L
Sbjct: 157 TVSKILSAYANKMNNTPVLVNLQPRDGVFALPGSLTATPISDSFDVESCNGYGLTTTSGT 216
Query: 196 -----EMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIE 250
+ P+V FG A ++NV+ YK+L+++L + + + + + +G++I+T +
Sbjct: 217 LVHNPKQPIVKNFGMADFNDNVDFYKLLIEKLGIAVLSRLDQDLNIKNSGVIIDTPA-LT 275
Query: 251 GVGYELLLHAIDTFKANVVLVLGQEKL-FSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309
++++ + F + ++V+G E+L + + ++++KL KS G + +
Sbjct: 276 SKNFDIVESMVSNFLIDNIIVIGNERLAIELTKKFAYKSTQLNIIKLNKSSGCIEVEDRF 335
Query: 310 RQKARSYRIREYFYG-LTNDLSPHANVANFSDFLVYR 345
+ + I+EYF G LSP S +Y+
Sbjct: 336 IRLQQEQTIKEYFNGNFKTRLSPFKTDIELSGLKIYK 372
Score = 81 (33.6 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 383 VLAVSYAKDADQ-----IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLT 437
++A+++ + D+ +++++V G+I V+ D Q+K + L P PG+ P LI+ +
Sbjct: 427 IVAITHLPNNDKKLGKDLLNTSVLGYIHVSKFDDQKKRLKVLFPFPGVFPKNVLISTNIG 486
Query: 438 WLE 440
+ E
Sbjct: 487 YNE 489
>UNIPROTKB|Q59ST8 [details] [associations]
symbol:CLP1 "Protein CLP1" species:237561 "Candida albicans
SC5314" [GO:0042493 "response to drug" evidence=IMP] CGD:CAL0000231
GO:GO:0005524 GO:GO:0005634 GO:GO:0042493 GO:GO:0006397
EMBL:AACQ01000148 EMBL:AACQ01000147 eggNOG:COG5623 KO:K14399
InterPro:IPR010655 Pfam:PF06807 RefSeq:XP_712695.1
RefSeq:XP_712732.1 ProteinModelPortal:Q59ST8 STRING:Q59ST8
GeneID:3645628 GeneID:3645681 KEGG:cal:CaO19.14193
KEGG:cal:CaO19.6931 Uniprot:Q59ST8
Length = 489
Score = 274 (101.5 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 85/337 (25%), Positives = 160/337 (47%)
Query: 42 LRLRLLNGNAEIYGTELP--PEIWLTFPPRLKFAVFTWYEATIE------------MDGT 87
L+ ++L G EI GTEL EI L+ ++ T +A IE + +
Sbjct: 39 LKFKVLTGIVEINGTELANNTEIQLSGTKTYLYSPVT--DAVIEYVLVENKDDLSLVSAS 96
Query: 88 PE--TDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQ--GPRVIVVGPTDSGKS 143
E +Y +DE+ M S +N++ LE +R + Q GP+V+++G SGK+
Sbjct: 97 DEGFVEYLSDESNMDSILNLHMYLESKRQYTKDYNFSSSIDQQQSGPKVLIIGSKYSGKT 156
Query: 144 TLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIE--LPIDPVEGIPL------ 195
T+S++L ++A K+ P V+L G +PG + ATPI ++ G L
Sbjct: 157 TVSKILSAYANKMNNTPVLVNLQPRDGVFALPGSLTATPISDSFDVESCNGYGLTTTSGT 216
Query: 196 -----EMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIE 250
+ P+V FG A ++NV+ YK+L+++L + + + + + +G++I+T +
Sbjct: 217 LVHNPKQPIVKNFGMADFNDNVDFYKLLIEKLGIAVLSRLDQDLNIKNSGVIIDTPA-LT 275
Query: 251 GVGYELLLHAIDTFKANVVLVLGQEKL-FSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309
++++ + F + ++V+G E+L + + ++++KL KS G + +
Sbjct: 276 SKNFDIVESMVSNFLIDNIIVIGNERLAIELTKKFAYKSTQLNIIKLNKSSGCIEVEDRF 335
Query: 310 RQKARSYRIREYFYG-LTNDLSPHANVANFSDFLVYR 345
+ + I+EYF G LSP S +Y+
Sbjct: 336 IRLQQEQTIKEYFNGNFKTRLSPFKTDIELSGLKIYK 372
Score = 81 (33.6 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 383 VLAVSYAKDADQ-----IISSNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLT 437
++A+++ + D+ +++++V G+I V+ D Q+K + L P PG+ P LI+ +
Sbjct: 427 IVAITHLPNNDKKLGKDLLNTSVLGYIHVSKFDDQKKRLKVLFPFPGVFPKNVLISTNIG 486
Query: 438 WLE 440
+ E
Sbjct: 487 YNE 489
>TAIR|locus:2183830 [details] [associations]
symbol:AT5G11010 species:3702 "Arabidopsis thaliana"
[GO:0005525 "GTP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006777 "Mo-molybdopterin cofactor biosynthetic
process" evidence=IEA] GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0005730 GO:GO:0006364 EMBL:AL365234
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731
EMBL:AY070379 EMBL:AY096562 EMBL:AF412075 IPI:IPI00524172
IPI:IPI00531789 PIR:T50810 RefSeq:NP_568243.1 RefSeq:NP_850805.1
RefSeq:NP_974765.1 UniGene:At.26406 UniGene:At.65836
ProteinModelPortal:Q8VYP6 SMR:Q8VYP6 PaxDb:Q8VYP6 PRIDE:Q8VYP6
EnsemblPlants:AT5G11010.2 EnsemblPlants:AT5G11010.3 GeneID:830968
KEGG:ath:AT5G11010 TAIR:At5g11010 HOGENOM:HOG000237585
InParanoid:Q8VYP6 OMA:TPERCFF PhylomeDB:Q8VYP6
ProtClustDB:CLSN2689597 Genevestigator:Q8VYP6 Uniprot:Q8VYP6
Length = 368
Score = 168 (64.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 41/133 (30%), Positives = 73/133 (54%)
Query: 133 IVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEG 192
+V GP +SGKST SR L+ + + ++D D+GQ T PG ++ T ++ I +
Sbjct: 33 LVCGPKNSGKSTFSRNLVEVLLQRYKRVAYLDTDVGQPEFTAPGFLSLTIVDKSILESDW 92
Query: 193 -IP-LEMP-LVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAA-GMVINTMGW 248
+P ++ P +F+G + + + Y V L + F ++E++ +VINT GW
Sbjct: 93 TVPCVKTPERCFFYGDVSSKRDPKAYLRYVYTLFDYYQLHFCKSSENKTELPLVINTPGW 152
Query: 249 IEGVGYELLLHAI 261
++G+GYELL+ +
Sbjct: 153 VKGIGYELLVDVL 165
Score = 39 (18.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 402 GFIFVTNVDTQRKTITYLAPSPGMLPSK 429
G V +DT+R + + P P L K
Sbjct: 307 GLGIVRGIDTERGILYVITPVPENLVEK 334
>UNIPROTKB|Q6BQV7 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:284592 "Debaryomyces hansenii CBS767" [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] GO:GO:0005524
GO:GO:0005730 GO:GO:0006364 EMBL:CR382137 GenomeReviews:CR382137_GR
eggNOG:COG1341 OrthoDB:EOG4ZPJ45 GO:GO:0051731 OMA:MIIGNKN
RefSeq:XP_459413.2 GeneID:2902894 KEGG:dha:DEHA2E01892g
HOGENOM:HOG000248705 Uniprot:Q6BQV7
Length = 680
Score = 166 (63.5 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 53/200 (26%), Positives = 93/200 (46%)
Query: 132 VIVVGPTDSGKSTLSRMLLSWAAKLGWKP-TFVDLDIGQGAITIPGCIAATPIELPIDPV 190
++++G +SGKSTLS+ LL+ +++DLD GQ ++P C++ T PI +
Sbjct: 264 IMIIGNKNSGKSTLSKTLLNSLILANQNTVSYLDLDPGQSEFSMPYCLSLTNHSKPIIGM 323
Query: 191 EGIPL----EMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTM 246
+P E + +++G TP + Y ++K L R+++ R ++INT
Sbjct: 324 N-VPKVSGDEDSVSHYYGFTTPQSQPSQYVSIIKALF----REYDQVYRPRGHHLIINTP 378
Query: 247 GWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG---GVV 303
GWI+G G ELL N +++L + D + N N+ + Q S G+
Sbjct: 379 GWIKGYGKELLNELTAFINPNQLILLSN----NTDNDNMDNSDNLSGLTFQNSRCFQGIY 434
Query: 304 SRNSKVRQKARSYRIREYFY 323
+ + R Y YF+
Sbjct: 435 QTSKYSPFQLRMYNKLSYFH 454
>UNIPROTKB|A8WQV9 [details] [associations]
symbol:nol-9 "Polynucleotide 5'-hydroxyl-kinase nol-9"
species:6238 "Caenorhabditis briggsae" [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] GO:GO:0005524
GO:GO:0005730 GO:GO:0006364 InterPro:IPR010655 Pfam:PF06807
EMBL:HE601298 eggNOG:COG1341 GO:GO:0051731 EnsemblMetazoa:CBG01769
WormBase:CBG01769 HOGENOM:HOG000016406 Uniprot:A8WQV9
Length = 548
Score = 155 (59.6 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 57/221 (25%), Positives = 105/221 (47%)
Query: 132 VIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV-DLDIGQGAITIPGCIAATPIELPI-DP 189
++ +G +GKS L R L++ G++ +V D DIGQ T GCI+ T + P+ D
Sbjct: 182 ILPIGHKGAGKSNLMRNLVNRCLSNGYEHVYVLDCDIGQSEFTPNGCISLTKVTSPLLDK 241
Query: 190 VEGIPLE-MPLVYFFGHATPS-NNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
G + YF+G T + NN++ Y ++ + L +F +E + ++N+MG
Sbjct: 242 PYGHQKKTFDNSYFYGDITVNDNNIDHYM----DIFERLFNKFKLISEPGSV-CIVNSMG 296
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKL--QKSGGVVSR 305
WI G E+L I + ++ + + +++ + R K VV++ S GV+
Sbjct: 297 WIVDEGAEILDGIIRVIEPDLCVEIFRDQ--TEARYSFKEFEKCKVVEIFANNSVGVIGL 354
Query: 306 NSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRI 346
++ + A +R G + L P +A+F+ YR+
Sbjct: 355 PNQKKLPAPLHR-ELTITGYFSSLLPRPTIASFASVPPYRL 394
>UNIPROTKB|G3V7B0 [details] [associations]
symbol:Nol9 "Protein Nol9" species:10116 "Rattus
norvegicus" [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA]
[GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity"
evidence=IEA] RGD:1566167 InterPro:IPR010655 Pfam:PF06807
EMBL:CH473968 CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP
RefSeq:XP_001076353.1 RefSeq:XP_233702.4 UniGene:Rn.162134
Ensembl:ENSRNOT00000013535 GeneID:313744 KEGG:rno:313744
NextBio:666739 Uniprot:G3V7B0
Length = 714
Score = 156 (60.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 46/149 (30%), Positives = 71/149 (47%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P +++ G D GKST SR+L++ +++ D+GQ T PGCI+ I P+
Sbjct: 316 PVILLCGACDIGKSTFSRILINHLLNSIPGVDYLECDLGQTEFTPPGCISLLNITEPLLG 375
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P +VYF G N E Y +VK + + +R+F ++INTMG
Sbjct: 376 PPYTHQRKPQKMVYF-GKTNCHNEYENYIEIVKYVFRDYKREFP---------LIINTMG 425
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEK 276
W+ G G LL+ I N V+ L ++
Sbjct: 426 WVSGDGLLLLVDLIRVLSPNYVVQLTSDR 454
>MGI|MGI:1921285 [details] [associations]
symbol:Nol9 "nucleolar protein 9" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISO] MGI:MGI:1921285 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:CH466594 GO:GO:0000460 InterPro:IPR010655
Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731 EMBL:AL611927 CTD:79707
GeneTree:ENSGT00390000012406 OMA:TISQGQP HOVERGEN:HBG058105
EMBL:AK014568 EMBL:AK042581 EMBL:AK046761 EMBL:AK050948
EMBL:AK157398 EMBL:BC024877 EMBL:BC125432 EMBL:BC132099
IPI:IPI00625464 IPI:IPI00649815 IPI:IPI00874324
RefSeq:NP_001153071.1 RefSeq:NP_083003.2 UniGene:Mm.275803
ProteinModelPortal:Q3TZX8 SMR:Q3TZX8 STRING:Q3TZX8
PhosphoSite:Q3TZX8 PaxDb:Q3TZX8 PRIDE:Q3TZX8
Ensembl:ENSMUST00000084116 Ensembl:ENSMUST00000103197
Ensembl:ENSMUST00000105663 GeneID:74035 KEGG:mmu:74035
UCSC:uc008vzc.2 UCSC:uc008vzd.2 UCSC:uc008vzf.2 InParanoid:Q3TZX8
NextBio:339594 Bgee:Q3TZX8 Genevestigator:Q3TZX8 Uniprot:Q3TZX8
Length = 714
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 43/149 (28%), Positives = 71/149 (47%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P +++ G D GKST +R+L++ +++ D+GQ T PGC+A I P+
Sbjct: 316 PVILLCGACDIGKSTFNRILINQLLNSIPGVDYLECDLGQTEFTPPGCVALLTITEPLLG 375
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P +VY+ G N+ E Y +VK + + +R+F ++INTMG
Sbjct: 376 PPYTHQRKPQRMVYY-GKMNCYNDYENYIDIVKYVFRDYKREFP---------LIINTMG 425
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEK 276
W+ G LL+ I N V+ L ++
Sbjct: 426 WVSDNGLRLLVDLIRVLSPNYVVQLYSDR 454
>UNIPROTKB|Q4IR18 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:229533 "Gibberella zeae PH-1" [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISS] GO:GO:0005524 GO:GO:0005730 GO:GO:0006364
eggNOG:COG1341 GO:GO:0051731 ProteinModelPortal:Q4IR18 PRIDE:Q4IR18
EnsemblFungi:FGSG_00340T0 Uniprot:Q4IR18
Length = 720
Score = 144 (55.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 53/218 (24%), Positives = 89/218 (40%)
Query: 85 DGTPETDYTADETPMVSYVNVNAVLEGRRNHXXXXXXXXXXXXQGPRVIVVGPTDSGKST 144
+ T E YT+++ P + V N ++ GP +GKST
Sbjct: 235 ESTFEIIYTSEDAPKKCIIQ-KLVSPPEWNKKLSSLVATSRKKPSLSTLICGPKSAGKST 293
Query: 145 LSRMLLSW-----AAKLGWKPTFV-DLDIGQGAITIPGCIAATPIELP------IDP-VE 191
SR+ L+ + K G + + DLD GQ PG ++ + P P ++
Sbjct: 294 FSRLFLNGLLTDRSQKQGARSVVILDLDPGQPEYAPPGTLSLVFVTKPNLGTPFTHPSLK 353
Query: 192 GIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEG 251
+ + ATP+ N +LY +L + ++G A +++NT GWI+G
Sbjct: 354 NSAFTVVRSHSMASATPAPNPDLYLACATDLFDTYSKHYSG------APLIVNTPGWIQG 407
Query: 252 VGYELLLHAIDTFKANVVLVL---GQEKLFSMLRDVLK 286
G +LL I+ K VL + G ++ + LR K
Sbjct: 408 TGLDLLSSLIEKIKPQEVLYMSEAGPDEAVNALRAATK 445
Score = 45 (20.9 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 398 SNVAGFIFVTNVDTQRKTITYLAPSP 423
S G + + +DT+ +T+ + P P
Sbjct: 589 SRTIGLVLLRGIDTKSETLQLVTPIP 614
>UNIPROTKB|Q5SY16 [details] [associations]
symbol:NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=TAS] [GO:0000460 "maturation of
5.8S rRNA" evidence=IMP] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=IDA] [GO:0005730 "nucleolus"
evidence=TAS] GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341
GO:GO:0051731 EMBL:AL591866 CTD:79707 OMA:TISQGQP EMBL:AK026976
EMBL:AK289653 EMBL:BC009257 EMBL:BC012439 EMBL:BC063639
EMBL:BC094836 EMBL:BC105095 EMBL:BC110849 EMBL:BC112278
IPI:IPI00002902 RefSeq:NP_078930.3 UniGene:Hs.59425
ProteinModelPortal:Q5SY16 SMR:Q5SY16 STRING:Q5SY16
PhosphoSite:Q5SY16 DMDM:73921242 SWISS-2DPAGE:Q5SY16 PaxDb:Q5SY16
PeptideAtlas:Q5SY16 PRIDE:Q5SY16 DNASU:79707
Ensembl:ENST00000377705 GeneID:79707 KEGG:hsa:79707 UCSC:uc001ans.3
GeneCards:GC01M006581 HGNC:HGNC:26265 neXtProt:NX_Q5SY16
PharmGKB:PA142671256 HOGENOM:HOG000113821 HOVERGEN:HBG058105
InParanoid:Q5SY16 OrthoDB:EOG45HRWZ PhylomeDB:Q5SY16 ChiTaRS:NOL9
GenomeRNAi:79707 NextBio:69023 Bgee:Q5SY16 CleanEx:HS_NOL9
Genevestigator:Q5SY16 GermOnline:ENSG00000162408 Uniprot:Q5SY16
Length = 702
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 42/134 (31%), Positives = 66/134 (49%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P ++V G D GKST +R L++ +++ D+GQ T PGCI+ I P+
Sbjct: 300 PVILVCGSQDVGKSTFNRYLINHLLNSLPCVDYLECDLGQTEFTPPGCISLLNITEPVLG 359
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P + +VY+ G + NN E Y +VK + F+ A R + +++NTMG
Sbjct: 360 PPFTHLRTPQKMVYY-GKPSCKNNYENYIDIVKYV-------FS--AYKRESPLIVNTMG 409
Query: 248 WIEGVGYELLLHAI 261
W+ G LL+ I
Sbjct: 410 WVSDQGLLLLIDLI 423
>UNIPROTKB|E2R0I7 [details] [associations]
symbol:NOL9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807
GO:GO:0051731 GeneTree:ENSGT00390000012406 OMA:TISQGQP
EMBL:AAEX03003905 Ensembl:ENSCAFT00000031165 Uniprot:E2R0I7
Length = 520
Score = 139 (54.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 51/186 (27%), Positives = 85/186 (45%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P ++V G D GKST +R L++ +++ D+GQ T PGCI+ I PI
Sbjct: 118 PVILVCGSQDVGKSTFNRYLINQLLNSISCIDYLECDLGQTEFTPPGCISLLNITEPILG 177
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P +VY+ G + NN E Y ++K + +R+ + +++NTMG
Sbjct: 178 PPFTHQRTPQKMVYY-GKPSCKNNYENYIEIIKYVFSSYKRE---------SPLIVNTMG 227
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN- 306
W+ G LL+ I + V+ FS R K PN+ + G+ +++
Sbjct: 228 WVSDKGLLLLIDLIRLLSPSHVVQ------FSSGRS--KYMPNLTPDYVDDMDGLYTKSK 279
Query: 307 SKVRQK 312
S+VR +
Sbjct: 280 SRVRNR 285
>POMBASE|SPCC830.03 [details] [associations]
symbol:grc3 "polynucleotide kinase Grc3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000448 "cleavage in
ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006363 "termination of
RNA polymerase I transcription" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=ISO;ISS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0030702 "chromatin silencing at centromere"
evidence=IMP] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0031618 "nuclear centromeric heterochromatin"
evidence=IDA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISO;ISS] [GO:0097356 "perinucleolar compartment"
evidence=IDA] PomBase:SPCC830.03 GO:GO:0005524 GO:GO:0005730
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0016887 GO:GO:0030702
GO:GO:0031618 GO:GO:0000448 GO:GO:0006363 GO:GO:0031508
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 KO:K06947
GO:GO:0051731 OrthoDB:EOG4NW2TR OMA:IAFRENE EMBL:AB027930
PIR:T41629 RefSeq:NP_588473.1 EnsemblFungi:SPCC830.03.1
GeneID:2539329 KEGG:spo:SPCC830.03 NextBio:20800494 GO:GO:0097356
Uniprot:Q9UU96
Length = 736
Score = 145 (56.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 48/160 (30%), Positives = 75/160 (46%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPID- 188
PR++V GP SGKS+ SR + + + ++DLD GQ + G I+ I P+
Sbjct: 332 PRLMVCGPKGSGKSSFSRYITNRLLQQYRHIAYLDLDPGQPEVVPSGHISLYYINSPLQG 391
Query: 189 PVEG---IPLEMPLVYFFGHATPSNNVELYKVLVKEL-AQMLERQFNGN-AESRAAGMVI 243
PV P M L G +P + + Y V L A+ + FN ++ ++I
Sbjct: 392 PVFARMLFPTYM-LRLHLGDISPQKDPDHYIACVTRLFAEYKDYIFNQEISQKEIIPLII 450
Query: 244 NTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRD 283
N GWI G G ELL +D + V+ + +E + S R+
Sbjct: 451 NCPGWIRGGGAELLSSIVDICQPTEVVYMSREDMKSSHRE 490
Score = 40 (19.1 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 57 ELPPEIWLTFPPRLKFA 73
E+ PE W +F +L F+
Sbjct: 307 EITPESWCSFSNQLLFS 323
>UNIPROTKB|E1BPN0 [details] [associations]
symbol:NOL9 "Polynucleotide 5'-hydroxyl-kinase NOL9"
species:9913 "Bos taurus" [GO:0000460 "maturation of 5.8S rRNA"
evidence=ISS] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 GO:GO:0051731
EMBL:AAFC03030715 IPI:IPI00714831 RefSeq:NP_001193528.1
UniGene:Bt.103226 Ensembl:ENSBTAT00000022240 GeneID:523474
KEGG:bta:523474 CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP
NextBio:20873752 Uniprot:E1BPN0
Length = 694
Score = 138 (53.6 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 41/149 (27%), Positives = 69/149 (46%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P ++V G D GKST +R L++ +++ D+GQ T PGCI+ I P+
Sbjct: 292 PVILVCGCQDIGKSTFNRYLINQLLNSVSCVDYLECDLGQTEFTPPGCISLLNITEPVLG 351
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P +VY+ G + NN E Y ++K + +R+ + ++INTMG
Sbjct: 352 PPFTHQRTPQKMVYY-GKTSCKNNFENYIEVIKYVFSSYKRE---------SPLIINTMG 401
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEK 276
W+ G LL+ I + V+ ++
Sbjct: 402 WVADQGLLLLIDLIRLLSPSHVVQFSSDR 430
>UNIPROTKB|I3LBV6 [details] [associations]
symbol:NOL9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051731 "polynucleotide 5'-hydroxyl-kinase activity"
evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IEA]
GO:GO:0000460 InterPro:IPR010655 Pfam:PF06807 GO:GO:0051731
CTD:79707 GeneTree:ENSGT00390000012406 OMA:TISQGQP EMBL:FP236215
RefSeq:XP_003127589.2 Ensembl:ENSSSCT00000027328 GeneID:100518312
KEGG:ssc:100518312 Uniprot:I3LBV6
Length = 694
Score = 135 (52.6 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 50/186 (26%), Positives = 84/186 (45%)
Query: 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-- 187
P ++V G D GKST R L++ +++ D+GQ T PGC++ I P+
Sbjct: 292 PVILVCGSQDVGKSTFIRYLMNQLLNSIPCIDYLECDLGQTEFTPPGCVSLLNITEPVLG 351
Query: 188 DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMG 247
P +VY+ G + +N E Y ++K + +R+ A +++NTMG
Sbjct: 352 PPFTHQRTPQKMVYY-GKTSCKDNFENYIEIIKYVFSSYKRE---------APLIVNTMG 401
Query: 248 WIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN- 306
W+ G LL+ I + V+ FS R K PN+ + G+ +++
Sbjct: 402 WVADKGLLLLVDLIRLLSPSHVVQ------FSSSRS--KYMPNLTPDYVDDMDGLYTKSK 453
Query: 307 SKVRQK 312
SKVR +
Sbjct: 454 SKVRNR 459
>WB|WBGene00010709 [details] [associations]
symbol:nol-9 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] GO:GO:0005524 GO:GO:0040010
GO:GO:0005730 GO:GO:0000003 GO:GO:0006974 GO:GO:0006364
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731
GeneTree:ENSGT00390000012406 HOGENOM:HOG000016406 EMBL:Z83114
RefSeq:NP_001255744.1 RefSeq:NP_001255745.1
ProteinModelPortal:Q9U3B6 SMR:Q9U3B6 PaxDb:Q9U3B6
EnsemblMetazoa:K09B11.2a.1 EnsemblMetazoa:K09B11.2a.2 GeneID:187190
KEGG:cel:CELE_K09B11.2 UCSC:K09B11.2 CTD:187190 WormBase:K09B11.2a
WormBase:K09B11.2b InParanoid:Q9U3B6 OMA:PALQCIG NextBio:934418
ArrayExpress:Q9U3B6 Uniprot:Q9U3B6
Length = 549
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 52/223 (23%), Positives = 98/223 (43%)
Query: 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV-DLDIGQGAITIPGCIAATPIELP 186
Q ++ +G +GKS L R L++ G++ +V D DIGQ T GC++ T + P
Sbjct: 182 QRTTILPIGHKGAGKSNLMRSLVNRCLSNGYEHVYVLDCDIGQSEFTPCGCLSLTKVTSP 241
Query: 187 I--DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVIN 244
I P +F+G T ++ LY ++ + L +F +E + +IN
Sbjct: 242 ILGKPHGHQRASFENSFFYGDITV-RDINLYM----DIFERLFNKFKVISEPGSV-CIIN 295
Query: 245 TMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304
+MGW+ G E+L + + + +++ + + + + N+ + S GV+
Sbjct: 296 SMGWVTDEGAEILDGITRVTDPELFVEIFRDQTEARYQFLNRAEHNIVEIFANNSIGVIG 355
Query: 305 RNSKVRQKARSYRIREY-FYGLTNDLSPHANVANFSDFLVYRI 346
+ R A IRE G + P ++A+F Y++
Sbjct: 356 LPPQKRLPAAL--IRELTIVGYFSSRLPRPSLASFPKVAPYKL 396
>UNIPROTKB|Q9U3B6 [details] [associations]
symbol:nol-9 "Polynucleotide 5'-hydroxyl-kinase nol-9"
species:6239 "Caenorhabditis elegans" [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] GO:GO:0005524 GO:GO:0040010 GO:GO:0005730
GO:GO:0000003 GO:GO:0006974 GO:GO:0006364 InterPro:IPR010655
Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731
GeneTree:ENSGT00390000012406 HOGENOM:HOG000016406 EMBL:Z83114
RefSeq:NP_001255744.1 RefSeq:NP_001255745.1
ProteinModelPortal:Q9U3B6 SMR:Q9U3B6 PaxDb:Q9U3B6
EnsemblMetazoa:K09B11.2a.1 EnsemblMetazoa:K09B11.2a.2 GeneID:187190
KEGG:cel:CELE_K09B11.2 UCSC:K09B11.2 CTD:187190 WormBase:K09B11.2a
WormBase:K09B11.2b InParanoid:Q9U3B6 OMA:PALQCIG NextBio:934418
ArrayExpress:Q9U3B6 Uniprot:Q9U3B6
Length = 549
Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 52/223 (23%), Positives = 98/223 (43%)
Query: 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV-DLDIGQGAITIPGCIAATPIELP 186
Q ++ +G +GKS L R L++ G++ +V D DIGQ T GC++ T + P
Sbjct: 182 QRTTILPIGHKGAGKSNLMRSLVNRCLSNGYEHVYVLDCDIGQSEFTPCGCLSLTKVTSP 241
Query: 187 I--DPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVIN 244
I P +F+G T ++ LY ++ + L +F +E + +IN
Sbjct: 242 ILGKPHGHQRASFENSFFYGDITV-RDINLYM----DIFERLFNKFKVISEPGSV-CIIN 295
Query: 245 TMGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304
+MGW+ G E+L + + + +++ + + + + N+ + S GV+
Sbjct: 296 SMGWVTDEGAEILDGITRVTDPELFVEIFRDQTEARYQFLNRAEHNIVEIFANNSIGVIG 355
Query: 305 RNSKVRQKARSYRIREY-FYGLTNDLSPHANVANFSDFLVYRI 346
+ R A IRE G + P ++A+F Y++
Sbjct: 356 LPPQKRLPAAL--IRELTIVGYFSSRLPRPSLASFPKVAPYKL 396
>SGD|S000003958 [details] [associations]
symbol:GRC3 "Polynucleotide kinase present on rDNA"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA;IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IPI] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051731 "polynucleotide 5'-hydroxyl-kinase
activity" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0016310 "phosphorylation"
evidence=IEA] SGD:S000003958 GO:GO:0005524 EMBL:BK006945
GO:GO:0006364 GO:GO:0006363 GO:GO:0030874 InterPro:IPR010655
Pfam:PF06807 eggNOG:COG1341 HOGENOM:HOG000112809 KO:K06947
OrthoDB:EOG4ZPJ45 GO:GO:0051731 OMA:MIIGNKN EMBL:Z73140 EMBL:X81985
PIR:S64786 RefSeq:NP_013065.1 ProteinModelPortal:Q07845 SMR:Q07845
STRING:Q07845 EnsemblFungi:YLL035W GeneID:850624 KEGG:sce:YLL035W
CYGD:YLL035w NextBio:966529 Genevestigator:Q07845
GermOnline:YLL035W Uniprot:Q07845
Length = 632
Score = 132 (51.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 45/155 (29%), Positives = 75/155 (48%)
Query: 131 RVIVVGPTDSGKSTLSRMLLS-WAAKLGWKPT------FVDLDIGQGAITIPGCIA---- 179
R++V+G +SGKST R+LL + + T ++DLD GQ ++P I+
Sbjct: 241 RIMVIGGKNSGKSTFLRLLLEKFTQDIRDSTTSQEELVYLDLDPGQPEYSLPDSISLNKI 300
Query: 180 -ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQ-FNGNAESR 237
++PI L +G + L ++ G ++P + Y +L LE Q F G +
Sbjct: 301 LSSPISLGQHLCQGSNFQTLLQFYAGSSSPQDEPTSYLNCADKLIDHLEEQAFFGTS--- 357
Query: 238 AAGMVINTMGWIEGVGYELLLHAIDTFKANVVLVL 272
++N GWI+G G ++L H I +K +L L
Sbjct: 358 ----LLNLPGWIKGFGMQILNHIIRKYKPTHLLFL 388
>DICTYBASE|DDB_G0277945 [details] [associations]
symbol:nol9 "NUC156 family protein" species:44689
"Dictyostelium discoideum" [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0051731
"polynucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=IEA;ISS] [GO:0000460
"maturation of 5.8S rRNA" evidence=ISS] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016301 "kinase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] dictyBase:DDB_G0277945 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0000460
InterPro:IPR010655 Pfam:PF06807 eggNOG:COG1341 GO:GO:0051731
RefSeq:XP_642025.1 ProteinModelPortal:Q54Z27 PRIDE:Q54Z27
EnsemblProtists:DDB0237577 GeneID:8621236 KEGG:ddi:DDB_G0277945
InParanoid:Q54Z27 OMA:LIRSIDM Uniprot:Q54Z27
Length = 683
Score = 131 (51.2 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 42/152 (27%), Positives = 72/152 (47%)
Query: 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPID 188
G ++ G + GKST +R+L++ K F++ D GQ T G ++ I++
Sbjct: 270 GLSILTCGERNVGKSTFNRILINKLLKKYTHIIFIETDTGQTEFTPSGIMS---IDIINS 326
Query: 189 PVEGIPL----EMPLV-YFFGHATPSNNVELYKVLVKEL---AQMLERQFNGNAESRAAG 240
P+ G P PL YFFG +P NN E + L +L ++++Q+
Sbjct: 327 PLLGPPFTHCKNNPLKSYFFGDTSPKNNPEYFLNLSFQLIDCCNLIKQQYPN------IP 380
Query: 241 MVINTMGWIEGVGYELLLHAIDTFKANVVLVL 272
+++NT GW++ +G L I FK ++ L
Sbjct: 381 IILNTNGWLKSLGLHLTQEIIKYFKPTSIVQL 412
Score = 42 (19.8 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 42 LRLRLLNGNAEIYGTELPPEIWLTFP 67
++ R + G+ E+YG + P+ +P
Sbjct: 113 IQARSIIGSVEVYGYTITPQSTTYYP 138
>UNIPROTKB|P0CM78 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:214684 "Cryptococcus neoformans var. neoformans JEC21"
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0051731
"polynucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0005730 GO:GO:0006364 GO:GO:0051731
EMBL:AE017344 RefSeq:XP_570592.1 UniGene:Fne.7249
ProteinModelPortal:P0CM78 GeneID:3256885 KEGG:cne:CND04240
Uniprot:P0CM78
Length = 744
Score = 129 (50.5 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 46/161 (28%), Positives = 71/161 (44%)
Query: 114 NHXXXXXXXXXXXXQGPRV-IVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172
+H Q P V +V GP SGKST +R LL+ + K +++ D+GQG
Sbjct: 308 SHAISSLSSSDVNLQTPFVGLVKGPKRSGKSTFARALLNNLLRRFRKVAWLECDLGQGEF 367
Query: 173 TIPGCIAATPIELPIDPVEGIPLEMPLV----YFFGHATPSNNVELYKVLVKELAQMLER 228
G A + + P G P PL+ ++ G TP + Y V ++ L + +
Sbjct: 368 ---GSGAVVGLWILDKPALGPPFTHPLLPSRSHYLGTYTPLTCPDEYLVAIRHLIEHYKY 424
Query: 229 QFNGNAESRA------------AGMVINTMGWIEGVGYELL 257
+ +E A +VINT GW++G+G ELL
Sbjct: 425 ELQYTSEYSALHTTVHDKISTHVPLVINTQGWMKGLGEELL 465
>UNIPROTKB|P0CM79 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:283643 "Cryptococcus neoformans var. neoformans B-3501A"
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0051731
"polynucleotide 5'-hydroxyl-kinase activity" evidence=ISS]
GO:GO:0005524 GO:GO:0005730 GO:GO:0006364 GO:GO:0051731
EMBL:AAEY01000019 RefSeq:XP_776161.1 ProteinModelPortal:P0CM79
GeneID:4935597 KEGG:cnb:CNBD2080 Uniprot:P0CM79
Length = 744
Score = 129 (50.5 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 46/161 (28%), Positives = 71/161 (44%)
Query: 114 NHXXXXXXXXXXXXQGPRV-IVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172
+H Q P V +V GP SGKST +R LL+ + K +++ D+GQG
Sbjct: 308 SHAISSLSSSDVNLQTPFVGLVKGPKRSGKSTFARALLNNLLRRFRKVAWLECDLGQGEF 367
Query: 173 TIPGCIAATPIELPIDPVEGIPLEMPLV----YFFGHATPSNNVELYKVLVKELAQMLER 228
G A + + P G P PL+ ++ G TP + Y V ++ L + +
Sbjct: 368 ---GSGAVVGLWILDKPALGPPFTHPLLPSRSHYLGTYTPLTCPDEYLVAIRHLIEHYKY 424
Query: 229 QFNGNAESRA------------AGMVINTMGWIEGVGYELL 257
+ +E A +VINT GW++G+G ELL
Sbjct: 425 ELQYTSEYSALHTTVHDKISTHVPLVINTQGWMKGLGEELL 465
>UNIPROTKB|Q6CQ06 [details] [associations]
symbol:GRC3 "Polynucleotide 5'-hydroxyl-kinase GRC3"
species:284590 "Kluyveromyces lactis NRRL Y-1140" [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0051731 "polynucleotide
5'-hydroxyl-kinase activity" evidence=ISS] GO:GO:0005524
GO:GO:0005730 GO:GO:0006364 InterPro:IPR010655 Pfam:PF06807
eggNOG:COG1341 HOGENOM:HOG000112809 KO:K06947 OrthoDB:EOG4ZPJ45
GO:GO:0051731 OMA:MIIGNKN EMBL:CR382125 RefSeq:XP_453983.1
ProteinModelPortal:Q6CQ06 STRING:Q6CQ06 GeneID:2894158
GenomeReviews:CR382125_GR KEGG:kla:KLLA0E00815g Uniprot:Q6CQ06
Length = 631
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 57/212 (26%), Positives = 97/212 (45%)
Query: 128 QGPRVIVVGPTDSGKSTLSRML----LSWAAKLGWKPT-FVDLDIGQGAITIPGCIAATP 182
Q RV+V+G +SGKSTL R+L L L ++ ++D+D GQ + P I+
Sbjct: 246 QDMRVMVIGGKNSGKSTLMRLLVQKFLHSNNDLSYEAIHYLDIDPGQPEYSPPESISWNK 305
Query: 183 IELPIDPVEGIPL---EMPLV--YFFGHATPSNNVELYKVLVKELAQMLERQ-FNGNAES 236
++ P G L + +F G ++P + E Y V+ L + + + F G +
Sbjct: 306 VD-PKSMSLGQHLCQGRFTTIKQHFIGSSSPQDWPETYSNAVESLLKEWQTENFMGTS-- 362
Query: 237 RAAGMVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQEKL-FSM---LRDVLKN--RPN 290
+N GWI+G G +++ HA+D FK ++ L L FS + D R
Sbjct: 363 -----FLNIPGWIKGFGVKIINHALDHFKPTHIIFLSYNGLPFSSEIKVPDAFSTTQRST 417
Query: 291 VDVVKLQKSGGVVSRN-SKVRQKARSYRIREY 321
+ LQ V ++ S Q+ + +IR++
Sbjct: 418 YKPIILQLHSPAVGKHISHALQRFNAAKIRQF 449
>TAIR|locus:2178062 [details] [associations]
symbol:AT5G39920 "AT5G39920" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002688 InterPro:IPR010655 Pfam:PF06807
IPI:IPI00519077 RefSeq:NP_198808.1 UniGene:At.55266
ProteinModelPortal:F4KFW6 SMR:F4KFW6 EnsemblPlants:AT5G39920.1
GeneID:833989 KEGG:ath:AT5G39920 Uniprot:F4KFW6
Length = 107
Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 398 SNVAGFIFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTW 438
S VAG + + NVD + TY++PS LPSK I G LTW
Sbjct: 64 SIVAGIVCIKNVDIGEERFTYVSPSAAELPSKIFILGALTW 104
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 441 417 0.00082 118 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 52
No. of states in DFA: 603 (64 KB)
Total size of DFA: 237 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.46u 0.22s 32.68t Elapsed: 00:00:01
Total cpu time: 32.48u 0.22s 32.70t Elapsed: 00:00:01
Start: Sat May 11 00:13:45 2013 End: Sat May 11 00:13:46 2013