Query 013511
Match_columns 441
No_of_seqs 434 out of 2219
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2749 mRNA cleavage and poly 100.0 2.1E-96 5E-101 697.9 41.7 411 23-440 2-415 (415)
2 COG5623 CLP1 Predicted GTPase 100.0 4.3E-71 9.4E-76 513.7 32.3 404 23-440 2-424 (424)
3 COG1126 GlnQ ABC-type polar am 100.0 5.7E-35 1.2E-39 263.2 1.0 199 98-322 1-236 (240)
4 COG1125 OpuBA ABC-type proline 100.0 7.5E-33 1.6E-37 254.5 6.0 200 99-324 1-238 (309)
5 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-32 2.4E-37 252.1 3.4 207 97-327 6-250 (263)
6 COG4555 NatA ABC-type Na+ tran 100.0 6.4E-30 1.4E-34 227.6 9.6 183 99-307 1-216 (245)
7 COG1135 AbcC ABC-type metal io 100.0 6E-31 1.3E-35 248.7 2.1 204 99-326 1-246 (339)
8 COG3842 PotA ABC-type spermidi 100.0 1.4E-30 3E-35 255.9 4.6 202 97-327 3-241 (352)
9 COG3839 MalK ABC-type sugar tr 100.0 1.7E-30 3.7E-35 253.9 3.6 201 98-327 2-238 (338)
10 COG1117 PstB ABC-type phosphat 100.0 2.6E-30 5.6E-35 232.2 3.9 202 97-325 5-251 (253)
11 COG1116 TauB ABC-type nitrate/ 100.0 2.6E-30 5.6E-35 239.5 -0.2 170 98-295 2-205 (248)
12 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-29 3.9E-34 238.2 5.1 186 99-309 2-223 (345)
13 PF06807 Clp1: Pre-mRNA cleava 100.0 6.4E-28 1.4E-32 222.6 14.3 186 247-441 1-195 (195)
14 COG1120 FepC ABC-type cobalami 100.0 5.6E-30 1.2E-34 241.4 -0.9 198 99-323 2-237 (258)
15 COG2884 FtsE Predicted ATPase 100.0 1.5E-28 3.2E-33 217.1 8.0 184 99-305 1-218 (223)
16 COG1124 DppF ABC-type dipeptid 99.9 1.1E-28 2.3E-33 226.9 1.9 189 97-307 1-225 (252)
17 COG1137 YhbG ABC-type (unclass 99.9 7.3E-29 1.6E-33 220.6 0.7 204 97-326 2-240 (243)
18 COG3638 ABC-type phosphate/pho 99.9 1.2E-28 2.7E-33 225.0 1.9 197 98-322 2-244 (258)
19 COG1341 Predicted GTPase or GT 99.9 1.3E-24 2.8E-29 213.6 30.0 343 40-437 9-382 (398)
20 COG3840 ThiQ ABC-type thiamine 99.9 3.3E-28 7.1E-33 213.3 3.3 180 99-308 1-214 (231)
21 COG0410 LivF ABC-type branched 99.9 5.9E-28 1.3E-32 220.5 2.9 200 97-321 1-234 (237)
22 COG1122 CbiO ABC-type cobalt t 99.9 4.7E-28 1E-32 227.8 2.2 186 98-307 2-222 (235)
23 COG1136 SalX ABC-type antimicr 99.9 3.3E-28 7.2E-33 225.1 0.4 180 100-302 2-220 (226)
24 COG4175 ProV ABC-type proline/ 99.9 4.2E-28 9E-33 229.3 0.7 187 120-326 45-269 (386)
25 COG0411 LivG ABC-type branched 99.9 5.5E-28 1.2E-32 222.4 0.4 201 97-322 2-248 (250)
26 PRK11650 ugpC glycerol-3-phosp 99.9 1.3E-27 2.7E-32 239.6 1.2 184 98-309 2-220 (356)
27 COG1131 CcmA ABC-type multidru 99.9 1.7E-27 3.7E-32 232.6 1.8 182 99-307 4-220 (293)
28 TIGR02314 ABC_MetN D-methionin 99.9 6.7E-28 1.5E-32 239.9 -1.3 188 99-308 1-225 (343)
29 PRK11432 fbpC ferric transport 99.9 1.2E-27 2.5E-32 239.3 0.3 186 96-309 3-222 (351)
30 PRK13537 nodulation ABC transp 99.9 2.8E-27 6E-32 233.0 1.1 185 97-308 5-222 (306)
31 TIGR03265 PhnT2 putative 2-ami 99.9 2.3E-27 5E-32 237.4 0.2 184 97-308 2-219 (353)
32 PRK09452 potA putrescine/sperm 99.9 4.3E-27 9.3E-32 236.9 0.9 186 95-308 10-229 (375)
33 PRK13536 nodulation factor exp 99.9 6.5E-27 1.4E-31 233.1 0.9 185 96-307 38-255 (340)
34 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 6.8E-27 1.5E-31 219.5 0.7 196 97-323 2-236 (254)
35 COG4152 ABC-type uncharacteriz 99.9 3.7E-26 8E-31 209.1 5.3 179 99-307 2-213 (300)
36 COG4525 TauB ABC-type taurine 99.9 6.9E-26 1.5E-30 200.8 4.6 182 98-306 2-217 (259)
37 PRK11607 potG putrescine trans 99.9 1.8E-26 3.9E-31 232.7 0.6 185 97-309 17-235 (377)
38 PRK11000 maltose/maltodextrin 99.9 1.9E-26 4.1E-31 232.5 0.3 182 99-308 3-218 (369)
39 TIGR00960 3a0501s02 Type II (G 99.9 1.5E-26 3.4E-31 216.7 -0.4 181 99-301 1-215 (216)
40 PRK10851 sulfate/thiosulfate t 99.9 2E-26 4.4E-31 230.6 -0.2 181 100-308 3-221 (353)
41 TIGR03258 PhnT 2-aminoethylpho 99.9 1.9E-26 4.1E-31 231.3 -0.4 182 100-309 6-224 (362)
42 PRK11614 livF leucine/isoleuci 99.9 6.9E-26 1.5E-30 215.4 2.7 188 96-308 2-221 (237)
43 TIGR01186 proV glycine betaine 99.9 8.7E-26 1.9E-30 226.1 3.0 172 115-308 7-214 (363)
44 PRK11153 metN DL-methionine tr 99.9 3.5E-26 7.5E-31 228.6 0.0 187 99-307 1-224 (343)
45 TIGR01288 nodI ATP-binding ABC 99.9 5.9E-26 1.3E-30 223.6 1.5 183 98-307 3-218 (303)
46 cd03266 ABC_NatA_sodium_export 99.9 9E-26 1.9E-30 211.8 2.6 181 99-304 1-216 (218)
47 cd03261 ABC_Org_Solvent_Resist 99.9 3.6E-26 7.8E-31 217.1 -0.3 182 102-307 3-220 (235)
48 COG4559 ABC-type hemin transpo 99.9 6.8E-26 1.5E-30 203.5 1.5 197 99-322 1-238 (259)
49 PRK09536 btuD corrinoid ABC tr 99.9 3.8E-26 8.3E-31 231.4 -0.4 199 98-323 2-237 (402)
50 cd03263 ABC_subfamily_A The AB 99.9 1.7E-25 3.6E-30 210.3 3.6 182 101-307 2-215 (220)
51 cd03259 ABC_Carb_Solutes_like 99.9 1.7E-25 3.7E-30 209.2 3.7 177 101-305 2-212 (213)
52 PRK15079 oligopeptide ABC tran 99.9 5.8E-26 1.3E-30 225.6 0.1 190 97-308 6-246 (331)
53 cd03218 ABC_YhbG The ABC trans 99.9 1.6E-25 3.5E-30 212.1 3.0 182 101-307 2-216 (232)
54 COG1123 ATPase components of v 99.9 1.9E-25 4.1E-30 228.6 3.5 190 96-308 277-514 (539)
55 PRK09493 glnQ glutamine ABC tr 99.9 9.4E-26 2E-30 214.8 0.9 185 99-307 1-219 (240)
56 TIGR03522 GldA_ABC_ATP gliding 99.9 9.6E-26 2.1E-30 221.8 0.6 182 100-308 3-216 (301)
57 cd03258 ABC_MetN_methionine_tr 99.9 1.4E-25 3.1E-30 212.7 1.5 187 99-307 1-224 (233)
58 PRK13643 cbiO cobalt transport 99.9 1E-25 2.2E-30 220.3 -0.0 187 99-308 1-228 (288)
59 cd03265 ABC_DrrA DrrA is the A 99.9 1.8E-25 4E-30 210.1 1.8 179 102-307 3-215 (220)
60 TIGR03411 urea_trans_UrtD urea 99.9 2.7E-25 5.8E-30 212.0 2.8 184 99-307 2-225 (242)
61 COG1101 PhnK ABC-type uncharac 99.9 3.3E-25 7.3E-30 199.4 3.0 203 99-323 1-249 (263)
62 PRK10895 lipopolysaccharide AB 99.9 2.8E-25 6.1E-30 211.7 2.6 201 98-324 2-236 (241)
63 PRK11264 putative amino-acid A 99.9 1.7E-25 3.7E-30 214.3 1.1 186 98-307 2-227 (250)
64 PRK11831 putative ABC transpor 99.9 1.3E-25 2.8E-30 217.5 0.2 186 98-307 6-227 (269)
65 cd03294 ABC_Pro_Gly_Bertaine T 99.9 7.9E-25 1.7E-29 212.0 5.6 183 101-307 26-244 (269)
66 TIGR01188 drrA daunorubicin re 99.9 4.9E-25 1.1E-29 216.9 4.1 168 115-307 7-207 (302)
67 cd03268 ABC_BcrA_bacitracin_re 99.9 2.2E-25 4.7E-30 207.7 1.3 175 102-304 3-206 (208)
68 cd03301 ABC_MalK_N The N-termi 99.9 4.3E-25 9.4E-30 206.4 3.3 176 102-305 3-212 (213)
69 TIGR00972 3a0107s01c2 phosphat 99.9 1.6E-25 3.4E-30 214.3 0.3 184 99-307 1-226 (247)
70 PRK11022 dppD dipeptide transp 99.9 1.5E-25 3.3E-30 222.3 0.2 189 98-308 2-238 (326)
71 PRK10070 glycine betaine trans 99.9 6.4E-25 1.4E-29 222.3 4.4 202 99-324 28-267 (400)
72 TIGR02673 FtsE cell division A 99.9 2.4E-25 5.2E-30 208.3 1.2 179 99-300 1-213 (214)
73 COG3845 ABC-type uncharacteriz 99.9 1E-24 2.2E-29 217.8 5.2 221 98-345 3-267 (501)
74 PRK13647 cbiO cobalt transport 99.9 1.4E-25 2.9E-30 217.9 -1.1 187 98-308 3-222 (274)
75 cd03224 ABC_TM1139_LivF_branch 99.9 5.6E-25 1.2E-29 206.9 3.0 182 101-307 2-215 (222)
76 cd03264 ABC_drug_resistance_li 99.9 2.6E-25 5.7E-30 207.6 0.6 176 102-305 3-210 (211)
77 COG4598 HisP ABC-type histidin 99.9 2.3E-24 5E-29 188.7 6.4 201 98-322 5-252 (256)
78 TIGR03415 ABC_choXWV_ATP choli 99.9 9E-25 2E-29 219.8 4.4 183 103-309 28-250 (382)
79 PRK14242 phosphate transporter 99.9 3.5E-25 7.6E-30 212.6 1.4 186 97-307 4-231 (253)
80 PRK10908 cell division protein 99.9 2.6E-25 5.7E-30 209.3 0.3 181 99-303 1-216 (222)
81 cd03260 ABC_PstB_phosphate_tra 99.9 2.2E-25 4.7E-30 210.5 -0.3 182 101-307 2-223 (227)
82 COG1129 MglA ABC-type sugar tr 99.9 6.7E-25 1.4E-29 223.2 3.2 185 96-306 5-227 (500)
83 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3E-25 6.4E-30 208.3 0.4 178 101-301 2-217 (218)
84 PRK11629 lolD lipoprotein tran 99.9 2.9E-25 6.3E-30 210.6 0.4 187 97-306 3-227 (233)
85 PRK14248 phosphate ABC transpo 99.9 5E-25 1.1E-29 213.3 2.0 205 95-324 17-265 (268)
86 cd03226 ABC_cobalt_CbiO_domain 99.9 2.1E-25 4.6E-30 207.4 -0.6 173 102-302 2-204 (205)
87 PRK13631 cbiO cobalt transport 99.9 2.4E-25 5.2E-30 220.3 -0.3 191 95-308 17-260 (320)
88 PRK11300 livG leucine/isoleuci 99.9 4.6E-25 1E-29 211.9 1.7 201 98-324 4-253 (255)
89 cd03262 ABC_HisP_GlnQ_permease 99.9 3.7E-25 7.9E-30 206.9 0.9 176 102-301 3-212 (213)
90 TIGR03410 urea_trans_UrtE urea 99.9 5E-25 1.1E-29 208.5 1.8 182 102-308 3-216 (230)
91 cd03257 ABC_NikE_OppD_transpor 99.9 7E-25 1.5E-29 207.0 2.8 184 99-304 1-226 (228)
92 cd03293 ABC_NrtD_SsuB_transpor 99.9 6.1E-25 1.3E-29 206.5 2.4 176 102-306 3-216 (220)
93 PRK14268 phosphate ABC transpo 99.9 4.4E-25 9.5E-30 212.5 1.4 203 97-324 10-255 (258)
94 cd03215 ABC_Carb_Monos_II This 99.9 7.1E-25 1.5E-29 200.1 2.7 163 98-301 3-181 (182)
95 cd03296 ABC_CysA_sulfate_impor 99.9 5.7E-25 1.2E-29 209.4 2.1 180 100-307 3-220 (239)
96 PRK13652 cbiO cobalt transport 99.9 3E-25 6.6E-30 215.8 0.2 187 98-308 2-222 (277)
97 PRK10744 pstB phosphate transp 99.9 4.9E-25 1.1E-29 212.5 1.6 205 95-324 9-257 (260)
98 cd03269 ABC_putative_ATPase Th 99.9 3.4E-25 7.4E-30 206.7 0.5 173 102-304 3-208 (210)
99 PRK13638 cbiO cobalt transport 99.9 4.3E-25 9.3E-30 214.1 1.1 186 99-308 1-220 (271)
100 PRK13651 cobalt transporter AT 99.9 2.4E-25 5.3E-30 218.9 -0.7 187 100-309 3-250 (305)
101 PRK14267 phosphate ABC transpo 99.9 1.2E-24 2.7E-29 208.8 4.2 187 98-308 3-232 (253)
102 PRK13641 cbiO cobalt transport 99.9 3.1E-25 6.7E-30 216.8 -0.0 185 100-307 3-228 (287)
103 PRK13637 cbiO cobalt transport 99.9 3E-25 6.5E-30 216.8 -0.1 185 100-307 3-228 (287)
104 PRK10575 iron-hydroxamate tran 99.9 3.3E-25 7.1E-30 214.2 0.1 191 91-307 3-231 (265)
105 PRK14256 phosphate ABC transpo 99.9 5.6E-25 1.2E-29 211.0 1.6 202 99-324 4-249 (252)
106 PRK14273 phosphate ABC transpo 99.9 8.7E-25 1.9E-29 210.0 2.9 186 97-307 5-232 (254)
107 PRK11308 dppF dipeptide transp 99.9 3E-25 6.4E-30 220.3 -0.4 190 97-308 3-239 (327)
108 TIGR02315 ABC_phnC phosphonate 99.9 8.5E-25 1.8E-29 208.6 2.7 186 99-308 1-230 (243)
109 PRK14247 phosphate ABC transpo 99.9 1.1E-24 2.4E-29 208.8 3.3 184 98-307 2-228 (250)
110 COG4604 CeuD ABC-type enteroch 99.9 1.2E-24 2.6E-29 193.3 3.2 199 99-324 1-235 (252)
111 PRK11247 ssuB aliphatic sulfon 99.9 4.9E-25 1.1E-29 211.8 0.7 179 97-306 10-216 (257)
112 PRK10584 putative ABC transpor 99.9 5.9E-25 1.3E-29 207.7 1.1 185 97-304 4-226 (228)
113 PRK15112 antimicrobial peptide 99.9 6.3E-25 1.4E-29 212.5 1.3 188 98-307 3-233 (267)
114 PRK14239 phosphate transporter 99.9 8E-25 1.7E-29 209.9 2.0 186 98-308 4-231 (252)
115 PRK13650 cbiO cobalt transport 99.9 3.8E-25 8.1E-30 215.3 -0.4 185 99-307 4-223 (279)
116 cd03219 ABC_Mj1267_LivG_branch 99.9 6.8E-25 1.5E-29 208.3 1.3 182 101-307 2-226 (236)
117 PRK14270 phosphate ABC transpo 99.9 7.1E-25 1.5E-29 210.2 1.4 202 98-324 3-248 (251)
118 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 1.1E-24 2.4E-29 207.0 2.7 181 99-307 1-215 (236)
119 PRK13646 cbiO cobalt transport 99.9 3.6E-25 7.8E-30 216.2 -0.8 186 100-308 3-230 (286)
120 PRK10619 histidine/lysine/argi 99.9 5.7E-25 1.2E-29 211.6 0.5 203 98-324 4-254 (257)
121 cd03256 ABC_PhnC_transporter A 99.9 2.2E-24 4.8E-29 205.4 4.6 184 101-307 2-228 (241)
122 PRK13634 cbiO cobalt transport 99.9 2.7E-25 5.9E-30 217.5 -1.9 185 100-307 3-229 (290)
123 PRK11124 artP arginine transpo 99.9 6.5E-25 1.4E-29 209.3 0.7 185 99-307 2-224 (242)
124 PRK11144 modC molybdate transp 99.9 4.2E-25 9.2E-30 221.6 -0.7 183 99-308 1-213 (352)
125 PRK14241 phosphate transporter 99.9 1.3E-24 2.9E-29 209.2 2.7 189 99-308 4-237 (258)
126 PRK15093 antimicrobial peptide 99.9 6.1E-25 1.3E-29 218.6 0.3 189 98-308 2-243 (330)
127 PRK14272 phosphate ABC transpo 99.9 1.6E-24 3.4E-29 207.9 3.1 202 99-324 4-249 (252)
128 PRK13635 cbiO cobalt transport 99.9 6.2E-25 1.3E-29 213.8 0.3 186 98-307 4-223 (279)
129 cd03292 ABC_FtsE_transporter F 99.9 5.3E-25 1.1E-29 205.9 -0.3 177 102-301 3-213 (214)
130 PRK11248 tauB taurine transpor 99.9 1.2E-24 2.6E-29 209.1 2.1 176 99-305 1-212 (255)
131 PRK14238 phosphate transporter 99.9 1.5E-24 3.2E-29 210.4 2.7 186 97-307 22-249 (271)
132 TIGR02211 LolD_lipo_ex lipopro 99.9 7.3E-25 1.6E-29 206.1 0.2 181 100-303 2-220 (221)
133 cd03295 ABC_OpuCA_Osmoprotecti 99.9 1.4E-24 3E-29 207.1 2.1 181 102-307 3-219 (242)
134 TIGR03740 galliderm_ABC gallid 99.9 2.4E-24 5.2E-29 202.9 3.7 177 102-308 3-208 (223)
135 PRK14265 phosphate ABC transpo 99.9 1.6E-24 3.6E-29 210.3 2.4 194 93-308 14-253 (274)
136 cd03225 ABC_cobalt_CbiO_domain 99.9 9E-25 2E-29 204.0 0.5 172 102-294 2-207 (211)
137 TIGR02769 nickel_nikE nickel i 99.9 8.6E-25 1.9E-29 211.3 0.3 187 99-307 2-234 (265)
138 PRK14243 phosphate transporter 99.9 1.8E-24 3.9E-29 208.9 2.6 190 96-307 7-242 (264)
139 PRK09473 oppD oligopeptide tra 99.9 6.6E-25 1.4E-29 218.1 -0.5 190 97-308 10-246 (330)
140 PRK14249 phosphate ABC transpo 99.9 1.4E-24 3E-29 208.2 1.7 202 98-324 3-248 (251)
141 PRK14245 phosphate ABC transpo 99.9 1.2E-24 2.6E-29 208.5 1.2 189 97-307 1-228 (250)
142 PRK13636 cbiO cobalt transport 99.9 7.8E-25 1.7E-29 213.6 -0.1 187 98-308 4-226 (283)
143 PRK13632 cbiO cobalt transport 99.9 9E-25 2E-29 211.9 -0.0 188 95-307 3-225 (271)
144 cd03233 ABC_PDR_domain1 The pl 99.9 1.8E-24 3.9E-29 200.7 1.8 177 100-304 4-200 (202)
145 KOG0058 Peptide exporter, ABC 99.9 6.9E-24 1.5E-28 220.4 6.3 183 99-307 465-685 (716)
146 COG2274 SunT ABC-type bacterio 99.9 1.9E-24 4E-29 231.8 2.1 187 100-312 472-695 (709)
147 PRK14259 phosphate ABC transpo 99.9 1.4E-24 3E-29 210.4 0.9 190 97-308 11-248 (269)
148 PRK14262 phosphate ABC transpo 99.9 3E-24 6.4E-29 205.8 3.2 186 98-308 2-229 (250)
149 TIGR03005 ectoine_ehuA ectoine 99.9 1E-24 2.2E-29 209.3 -0.1 183 101-307 2-230 (252)
150 PRK14274 phosphate ABC transpo 99.9 1.7E-24 3.7E-29 208.5 1.3 187 96-307 9-237 (259)
151 PRK14235 phosphate transporter 99.9 1.8E-24 3.9E-29 209.3 1.3 186 97-307 17-245 (267)
152 PRK13644 cbiO cobalt transport 99.9 1.3E-24 2.9E-29 211.0 0.3 184 99-307 1-218 (274)
153 COG4987 CydC ABC-type transpor 99.9 2.9E-24 6.4E-29 216.1 2.7 197 99-321 336-569 (573)
154 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.2E-24 2.7E-29 203.1 -0.1 173 102-304 3-209 (211)
155 PRK13633 cobalt transporter AT 99.9 1.7E-24 3.7E-29 210.9 0.8 187 97-307 2-227 (280)
156 PRK14240 phosphate transporter 99.9 2.3E-24 5E-29 206.5 1.7 184 99-307 3-228 (250)
157 PRK10771 thiQ thiamine transpo 99.9 2.4E-24 5.1E-29 204.2 1.6 195 99-324 1-229 (232)
158 PRK14254 phosphate ABC transpo 99.9 3.4E-24 7.4E-29 209.1 2.7 204 96-324 36-282 (285)
159 PRK13639 cbiO cobalt transport 99.9 1.1E-24 2.4E-29 211.6 -0.8 185 99-307 1-220 (275)
160 PRK14251 phosphate ABC transpo 99.9 2.5E-24 5.4E-29 206.4 1.5 186 98-308 3-230 (251)
161 PRK14255 phosphate ABC transpo 99.9 2.8E-24 6.1E-29 206.2 1.9 186 98-308 4-231 (252)
162 cd03213 ABCG_EPDR ABCG transpo 99.9 2.7E-24 5.8E-29 198.3 1.6 169 100-304 4-192 (194)
163 cd03230 ABC_DR_subfamily_A Thi 99.9 1.9E-24 4.2E-29 195.6 0.6 156 103-301 4-172 (173)
164 PRK14250 phosphate ABC transpo 99.9 1.7E-24 3.7E-29 206.3 0.2 182 99-307 3-215 (241)
165 COG4181 Predicted ABC-type tra 99.9 7.3E-24 1.6E-28 184.3 4.1 184 98-304 5-226 (228)
166 PRK14275 phosphate ABC transpo 99.9 3.4E-24 7.4E-29 209.3 2.2 186 97-307 37-264 (286)
167 cd03297 ABC_ModC_molybdenum_tr 99.9 3.2E-24 6.9E-29 200.8 1.8 175 104-305 5-213 (214)
168 PRK14253 phosphate ABC transpo 99.9 4E-24 8.7E-29 204.7 2.5 184 98-307 2-227 (249)
169 PRK10253 iron-enterobactin tra 99.9 2.7E-24 5.8E-29 207.9 1.0 185 97-307 5-227 (265)
170 PRK14269 phosphate ABC transpo 99.9 3.5E-24 7.6E-29 204.8 1.7 182 99-307 2-224 (246)
171 cd03246 ABCC_Protease_Secretio 99.9 2.9E-24 6.3E-29 194.5 1.0 157 102-301 3-172 (173)
172 PRK14261 phosphate ABC transpo 99.9 6.2E-24 1.3E-28 203.9 3.2 187 97-308 4-232 (253)
173 PRK13640 cbiO cobalt transport 99.9 2E-24 4.3E-29 210.6 -0.3 188 97-308 3-227 (282)
174 PRK14257 phosphate ABC transpo 99.9 3.9E-24 8.6E-29 212.3 1.8 204 98-324 79-326 (329)
175 COG0444 DppD ABC-type dipeptid 99.9 3.3E-24 7.2E-29 205.5 1.1 187 100-308 2-238 (316)
176 PRK14236 phosphate transporter 99.9 6E-24 1.3E-28 206.2 2.7 188 95-307 21-250 (272)
177 PRK14237 phosphate transporter 99.9 4E-24 8.6E-29 206.9 1.4 188 96-308 17-246 (267)
178 PRK13648 cbiO cobalt transport 99.9 2.2E-24 4.8E-29 208.9 -0.4 187 97-307 5-225 (269)
179 cd03229 ABC_Class3 This class 99.9 1.6E-24 3.5E-29 197.0 -1.4 158 102-294 3-174 (178)
180 PRK11231 fecE iron-dicitrate t 99.9 2.6E-24 5.7E-29 206.8 -0.2 197 99-322 2-235 (255)
181 PRK09984 phosphonate/organopho 99.9 1.1E-23 2.3E-28 203.3 4.0 202 98-325 3-252 (262)
182 cd03232 ABC_PDR_domain2 The pl 99.9 5.2E-24 1.1E-28 196.1 1.6 168 100-304 4-190 (192)
183 PRK13543 cytochrome c biogenes 99.9 6.2E-24 1.4E-28 198.9 2.1 172 97-294 9-210 (214)
184 PRK13649 cbiO cobalt transport 99.9 3.4E-24 7.3E-29 208.9 0.1 185 100-307 3-228 (280)
185 COG4148 ModC ABC-type molybdat 99.9 3.5E-23 7.6E-28 192.9 6.8 179 104-308 5-213 (352)
186 TIGR01277 thiQ thiamine ABC tr 99.9 1.1E-23 2.4E-28 197.1 3.4 176 101-306 2-211 (213)
187 cd03235 ABC_Metallic_Cations A 99.9 4.3E-24 9.2E-29 199.8 0.6 165 102-294 2-205 (213)
188 TIGR01978 sufC FeS assembly AT 99.9 5.9E-24 1.3E-28 202.7 1.5 182 101-307 2-228 (243)
189 COG4988 CydD ABC-type transpor 99.9 9.5E-24 2.1E-28 215.4 3.0 196 100-322 321-552 (559)
190 cd03251 ABCC_MsbA MsbA is an e 99.9 4.6E-24 9.9E-29 202.4 0.5 180 102-307 3-219 (234)
191 PRK14271 phosphate ABC transpo 99.9 9.2E-24 2E-28 205.2 2.6 208 96-329 18-269 (276)
192 cd03247 ABCC_cytochrome_bd The 99.9 3.9E-24 8.5E-29 194.5 -0.3 162 102-304 3-176 (178)
193 KOG0055 Multidrug/pheromone ex 99.9 1.4E-23 3.1E-28 229.4 3.8 185 99-309 350-572 (1228)
194 PRK14260 phosphate ABC transpo 99.9 8E-24 1.7E-28 203.9 1.6 189 98-308 6-238 (259)
195 cd03228 ABCC_MRP_Like The MRP 99.9 7.7E-24 1.7E-28 191.3 1.3 153 102-294 3-167 (171)
196 cd03267 ABC_NatA_like Similar 99.9 3.3E-23 7.2E-28 196.9 5.7 166 115-305 35-235 (236)
197 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 3.6E-23 7.8E-28 195.1 5.8 168 100-305 23-223 (224)
198 KOG0057 Mitochondrial Fe/S clu 99.9 1.4E-23 3E-28 211.4 3.1 197 100-324 352-585 (591)
199 cd03234 ABCG_White The White s 99.9 1.3E-23 2.8E-28 198.3 2.7 179 100-305 4-225 (226)
200 PRK14264 phosphate ABC transpo 99.9 2E-23 4.2E-28 205.7 3.9 205 95-324 41-302 (305)
201 PRK13645 cbiO cobalt transport 99.9 6.7E-24 1.4E-28 207.7 0.5 186 99-307 6-234 (289)
202 PRK11701 phnK phosphonate C-P 99.9 7E-24 1.5E-28 204.2 0.5 186 98-307 5-235 (258)
203 PRK14246 phosphate ABC transpo 99.9 1.6E-23 3.4E-28 201.6 2.7 188 96-307 7-235 (257)
204 PRK10419 nikE nickel transport 99.9 6E-24 1.3E-28 205.8 -0.3 188 98-307 2-235 (268)
205 cd03245 ABCC_bacteriocin_expor 99.9 4.7E-24 1E-28 200.4 -1.1 178 101-304 4-218 (220)
206 PRK13548 hmuV hemin importer A 99.9 6.1E-24 1.3E-28 204.6 -0.3 183 99-307 2-224 (258)
207 PRK10762 D-ribose transporter 99.9 1E-23 2.2E-28 221.7 1.3 185 98-307 3-224 (501)
208 TIGR02142 modC_ABC molybdenum 99.9 3.1E-23 6.8E-28 208.3 4.7 178 104-307 4-215 (354)
209 PRK14263 phosphate ABC transpo 99.9 3.9E-23 8.5E-28 199.2 5.2 190 96-307 5-239 (261)
210 TIGR03873 F420-0_ABC_ATP propo 99.9 1.1E-23 2.3E-28 202.6 1.3 182 101-308 3-221 (256)
211 PRK13642 cbiO cobalt transport 99.9 8.4E-24 1.8E-28 205.7 0.4 185 99-307 4-223 (277)
212 cd03289 ABCC_CFTR2 The CFTR su 99.9 1.1E-23 2.4E-28 204.0 1.2 197 101-324 4-236 (275)
213 PRK15439 autoinducer 2 ABC tra 99.9 3.2E-24 7E-29 225.7 -2.8 186 97-307 9-223 (510)
214 PRK09700 D-allose transporter 99.9 1.4E-23 3.1E-28 221.1 1.7 185 98-307 4-228 (510)
215 cd03300 ABC_PotA_N PotA is an 99.9 2.7E-23 5.9E-28 196.9 3.4 178 102-307 3-214 (232)
216 TIGR00968 3a0106s01 sulfate AB 99.9 1.9E-23 4.1E-28 198.7 2.0 178 102-307 3-214 (237)
217 PRK10261 glutathione transport 99.9 1.3E-23 2.7E-28 225.9 0.9 189 97-307 311-547 (623)
218 PRK14266 phosphate ABC transpo 99.9 1.7E-23 3.6E-28 200.6 1.6 201 99-324 3-247 (250)
219 cd03252 ABCC_Hemolysin The ABC 99.9 2.4E-23 5.2E-28 197.9 2.4 180 102-307 3-219 (237)
220 PRK13538 cytochrome c biogenes 99.9 1.4E-23 3.1E-28 195.0 0.8 158 99-275 1-188 (204)
221 TIGR01184 ntrCD nitrate transp 99.9 7.3E-23 1.6E-27 193.8 5.7 159 121-306 3-197 (230)
222 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.1E-23 2.5E-28 196.0 -0.0 182 99-306 6-205 (207)
223 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.8E-23 3.9E-28 227.7 1.5 184 100-310 452-670 (686)
224 TIGR03608 L_ocin_972_ABC putat 99.9 1.4E-23 3.1E-28 195.1 0.5 169 103-293 2-205 (206)
225 cd03299 ABC_ModC_like Archeal 99.9 3.1E-23 6.7E-28 196.9 2.8 177 102-307 3-213 (235)
226 TIGR02323 CP_lyasePhnK phospho 99.9 1.4E-23 3E-28 201.5 0.4 186 98-307 2-232 (253)
227 PRK11176 lipid transporter ATP 99.9 2.3E-23 5E-28 223.0 2.0 185 100-310 342-564 (582)
228 PRK13549 xylose transporter AT 99.9 1.7E-23 3.7E-28 220.2 1.0 186 97-307 3-226 (506)
229 PRK14244 phosphate ABC transpo 99.9 3.8E-23 8.3E-28 198.2 3.0 181 102-307 8-231 (251)
230 COG4161 ArtP ABC-type arginine 99.9 4.2E-23 9.1E-28 177.9 2.8 197 100-322 3-240 (242)
231 COG1132 MdlB ABC-type multidru 99.9 4.5E-23 9.8E-28 220.0 3.6 196 100-322 329-561 (567)
232 COG4619 ABC-type uncharacteriz 99.9 9.5E-23 2E-27 176.8 4.9 172 99-294 3-207 (223)
233 PRK10938 putative molybdenum t 99.9 1.8E-23 3.8E-28 219.4 0.3 185 99-307 3-218 (490)
234 PRK10247 putative ABC transpor 99.9 3.9E-23 8.4E-28 195.0 2.4 183 97-306 5-220 (225)
235 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 2.5E-23 5.4E-28 227.5 1.2 185 99-310 477-697 (710)
236 cd03231 ABC_CcmA_heme_exporter 99.9 1.8E-23 3.9E-28 193.8 0.0 168 102-293 3-197 (201)
237 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.6E-23 5.5E-28 197.8 0.9 180 102-307 3-220 (238)
238 PRK14252 phosphate ABC transpo 99.9 2.5E-23 5.4E-28 201.1 0.8 203 97-324 14-262 (265)
239 COG1123 ATPase components of v 99.9 2.7E-23 5.7E-28 212.9 0.7 190 98-309 4-240 (539)
240 PRK11174 cysteine/glutathione 99.9 4.7E-23 1E-27 220.8 2.6 195 100-322 350-581 (588)
241 PRK11160 cysteine/glutathione 99.9 1.7E-23 3.8E-28 223.2 -1.1 196 99-320 338-569 (574)
242 cd03217 ABC_FeS_Assembly ABC-t 99.9 2.6E-23 5.7E-28 192.6 0.2 170 102-307 3-188 (200)
243 cd03254 ABCC_Glucan_exporter_l 99.9 2.2E-23 4.8E-28 197.0 -0.3 180 101-307 4-220 (229)
244 cd03244 ABCC_MRP_domain2 Domai 99.9 1.9E-23 4.2E-28 196.4 -0.9 180 101-306 4-219 (221)
245 PRK14258 phosphate ABC transpo 99.9 6.3E-23 1.4E-27 197.9 2.6 185 98-307 6-239 (261)
246 PRK10261 glutathione transport 99.9 3.4E-23 7.4E-28 222.6 0.7 190 96-307 9-252 (623)
247 TIGR02770 nickel_nikD nickel i 99.9 1.3E-22 2.7E-27 192.2 4.4 165 121-307 4-209 (230)
248 cd03223 ABCD_peroxisomal_ALDP 99.9 4.1E-23 8.8E-28 185.7 0.7 151 102-301 3-164 (166)
249 TIGR01193 bacteriocin_ABC ABC- 99.9 4.7E-23 1E-27 225.3 1.0 184 99-309 473-693 (708)
250 TIGR01257 rim_protein retinal- 99.9 6.3E-23 1.4E-27 238.2 2.0 188 96-308 1934-2154(2272)
251 PRK11288 araG L-arabinose tran 99.9 4.8E-23 1E-27 216.6 0.6 183 98-305 3-221 (501)
252 PRK09544 znuC high-affinity zi 99.9 5.2E-23 1.1E-27 197.2 0.8 186 98-322 3-217 (251)
253 TIGR02982 heterocyst_DevA ABC 99.9 2.8E-23 6.1E-28 195.3 -1.1 178 101-301 3-218 (220)
254 cd03253 ABCC_ATM1_transporter 99.9 5.2E-23 1.1E-27 195.4 0.5 179 102-307 3-218 (236)
255 PRK13547 hmuV hemin importer A 99.9 2.9E-23 6.3E-28 201.2 -1.3 183 99-307 1-238 (272)
256 cd03288 ABCC_SUR2 The SUR doma 99.9 4.7E-23 1E-27 198.3 -0.0 201 98-324 18-255 (257)
257 PRK10418 nikD nickel transport 99.9 1E-22 2.2E-27 195.6 2.2 182 99-307 4-224 (254)
258 PRK15134 microcin C ABC transp 99.9 7.6E-23 1.7E-27 216.4 1.4 189 96-307 272-509 (529)
259 CHL00131 ycf16 sulfate ABC tra 99.9 1.2E-22 2.5E-27 194.9 2.5 191 96-309 4-237 (252)
260 cd03248 ABCC_TAP TAP, the Tran 99.9 1.6E-23 3.4E-28 197.7 -3.5 179 97-301 9-225 (226)
261 TIGR02203 MsbA_lipidA lipid A 99.8 7.8E-23 1.7E-27 218.4 0.2 185 100-310 331-553 (571)
262 PRK13539 cytochrome c biogenes 99.8 7.6E-23 1.6E-27 190.5 0.0 156 99-275 2-186 (207)
263 TIGR00958 3a01208 Conjugate Tr 99.8 1.2E-22 2.5E-27 221.9 1.5 184 99-309 478-698 (711)
264 TIGR03375 type_I_sec_LssB type 99.8 9.7E-23 2.1E-27 222.3 0.8 185 99-309 463-684 (694)
265 PRK15134 microcin C ABC transp 99.8 1.4E-22 3E-27 214.4 1.9 189 97-307 3-240 (529)
266 cd03216 ABC_Carb_Monos_I This 99.8 9.3E-23 2E-27 182.8 0.3 146 102-303 3-161 (163)
267 PRK13545 tagH teichoic acids e 99.8 4.3E-22 9.4E-27 204.8 5.2 180 91-307 13-226 (549)
268 COG4674 Uncharacterized ABC-ty 99.8 5.6E-23 1.2E-27 182.4 -1.2 202 98-325 4-246 (249)
269 PRK10790 putative multidrug tr 99.8 1.1E-22 2.3E-27 218.2 0.7 196 100-322 341-572 (592)
270 PRK15177 Vi polysaccharide exp 99.8 3.3E-21 7.1E-26 180.3 10.3 152 121-307 5-186 (213)
271 cd03214 ABC_Iron-Siderophores_ 99.8 5.8E-23 1.3E-27 187.1 -1.5 162 103-304 3-178 (180)
272 COG4608 AppF ABC-type oligopep 99.8 2.8E-22 6.2E-27 188.3 3.0 164 98-307 3-193 (268)
273 PRK09580 sufC cysteine desulfu 99.8 2.8E-22 6.1E-27 191.8 3.0 184 99-307 1-229 (248)
274 PRK13657 cyclic beta-1,2-gluca 99.8 1.4E-22 3E-27 217.2 0.5 197 99-322 334-567 (588)
275 TIGR01846 type_I_sec_HlyB type 99.8 2.1E-22 4.5E-27 219.6 1.9 198 99-322 455-689 (694)
276 PRK10982 galactose/methyl gala 99.8 1.9E-22 4.1E-27 211.5 1.4 180 103-307 2-217 (491)
277 COG4167 SapF ABC-type antimicr 99.8 1.1E-21 2.3E-26 172.5 5.8 205 97-324 2-256 (267)
278 TIGR01257 rim_protein retinal- 99.8 1.8E-22 3.8E-27 234.5 1.1 186 98-308 927-1144(2272)
279 PRK11819 putative ABC transpor 99.8 4.9E-22 1.1E-26 211.3 4.2 168 98-303 5-239 (556)
280 PRK13540 cytochrome c biogenes 99.8 7E-23 1.5E-27 189.7 -2.0 158 99-275 1-186 (200)
281 TIGR02324 CP_lyasePhnL phospho 99.8 1.5E-22 3.3E-27 190.7 -0.1 177 99-294 1-222 (224)
282 TIGR02633 xylG D-xylose ABC tr 99.8 2.4E-22 5.1E-27 211.3 1.4 183 100-307 2-224 (500)
283 PRK13549 xylose transporter AT 99.8 4.7E-22 1E-26 209.3 3.1 189 97-307 257-488 (506)
284 cd03250 ABCC_MRP_domain1 Domai 99.8 3.9E-22 8.4E-27 185.3 1.9 158 101-294 2-200 (204)
285 PRK10789 putative multidrug tr 99.8 2.6E-22 5.6E-27 214.1 0.6 198 100-323 314-548 (569)
286 TIGR01189 ccmA heme ABC export 99.8 2E-22 4.3E-27 186.4 -0.3 155 102-275 3-186 (198)
287 PRK09700 D-allose transporter 99.8 7.2E-22 1.6E-26 208.1 3.9 183 97-306 263-491 (510)
288 TIGR03269 met_CoM_red_A2 methy 99.8 2.6E-22 5.7E-27 211.9 0.5 189 97-307 277-511 (520)
289 KOG0055 Multidrug/pheromone ex 99.8 7.6E-22 1.6E-26 216.0 3.9 185 100-310 988-1210(1228)
290 PRK15056 manganese/iron transp 99.8 8.4E-22 1.8E-26 191.2 3.6 182 99-307 6-224 (272)
291 PRK03695 vitamin B12-transport 99.8 6.6E-22 1.4E-26 189.3 2.6 175 102-307 3-216 (248)
292 TIGR03269 met_CoM_red_A2 methy 99.8 4.7E-22 1E-26 210.0 1.2 183 101-307 2-252 (520)
293 TIGR01192 chvA glucan exporter 99.8 6.8E-22 1.5E-26 211.4 1.8 198 99-323 334-568 (585)
294 KOG0056 Heavy metal exporter H 99.8 1.3E-21 2.9E-26 193.9 3.5 189 99-314 537-762 (790)
295 PRK15064 ABC transporter ATP-b 99.8 2.5E-21 5.3E-26 205.0 5.7 170 99-306 1-235 (530)
296 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 2.1E-21 4.6E-26 206.3 5.1 168 98-303 3-237 (552)
297 PRK13546 teichoic acids export 99.8 9.6E-21 2.1E-25 182.7 9.1 156 115-307 38-226 (264)
298 TIGR01842 type_I_sec_PrtD type 99.8 4.8E-22 1E-26 211.1 0.0 184 99-308 316-537 (544)
299 TIGR02204 MsbA_rel ABC transpo 99.8 6.5E-22 1.4E-26 211.6 0.9 184 100-309 338-559 (576)
300 PRK15064 ABC transporter ATP-b 99.8 6.9E-22 1.5E-26 209.2 0.6 173 98-306 318-518 (530)
301 cd03237 ABC_RNaseL_inhibitor_d 99.8 5.7E-21 1.2E-25 182.5 6.8 141 123-294 19-189 (246)
302 TIGR02868 CydC thiol reductant 99.8 3.9E-22 8.4E-27 211.2 -1.5 158 99-275 334-528 (529)
303 PLN03130 ABC transporter C fam 99.8 8.8E-22 1.9E-26 229.5 1.3 185 99-309 1237-1457(1622)
304 PLN03232 ABC transporter C fam 99.8 6.9E-22 1.5E-26 229.9 0.3 186 99-310 1234-1455(1495)
305 COG1134 TagH ABC-type polysacc 99.8 1.1E-20 2.4E-25 174.4 8.0 175 99-309 24-232 (249)
306 COG0396 sufC Cysteine desulfur 99.8 5.6E-21 1.2E-25 174.3 5.8 201 98-322 2-244 (251)
307 cd03222 ABC_RNaseL_inhibitor T 99.8 6.2E-21 1.4E-25 172.7 6.1 129 102-294 3-145 (177)
308 TIGR02633 xylG D-xylose ABC tr 99.8 2.7E-21 5.9E-26 203.3 4.1 186 97-304 255-483 (500)
309 cd03290 ABCC_SUR1_N The SUR do 99.8 3.5E-21 7.7E-26 180.7 4.1 171 102-294 3-214 (218)
310 TIGR01166 cbiO cobalt transpor 99.8 2.6E-21 5.5E-26 177.8 2.9 144 116-275 7-186 (190)
311 TIGR00957 MRP_assoc_pro multi 99.8 1.6E-21 3.5E-26 227.2 1.8 186 99-310 1284-1505(1522)
312 PTZ00265 multidrug resistance 99.8 2.2E-21 4.8E-26 224.2 2.8 197 100-322 1166-1462(1466)
313 TIGR02857 CydD thiol reductant 99.8 5.5E-22 1.2E-26 210.0 -2.5 172 99-293 320-528 (529)
314 cd03291 ABCC_CFTR1 The CFTR su 99.8 4.9E-21 1.1E-25 186.2 4.1 185 97-324 37-258 (282)
315 PRK13541 cytochrome c biogenes 99.8 1.2E-21 2.7E-26 180.7 -0.3 153 100-275 2-182 (195)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.8 4.7E-21 1E-25 168.2 3.0 126 103-294 4-140 (144)
317 PRK10762 D-ribose transporter 99.8 4.8E-21 1E-25 201.4 3.7 181 97-307 255-478 (501)
318 COG1119 ModF ABC-type molybden 99.8 2.6E-21 5.7E-26 178.3 1.4 188 95-306 27-255 (257)
319 PTZ00243 ABC transporter; Prov 99.8 2.4E-21 5.2E-26 225.5 1.2 186 99-310 1308-1530(1560)
320 PRK11819 putative ABC transpor 99.8 4E-21 8.7E-26 204.3 2.4 169 97-303 322-522 (556)
321 COG4172 ABC-type uncharacteriz 99.8 8.4E-21 1.8E-25 184.9 4.3 168 121-309 305-512 (534)
322 COG4133 CcmA ABC-type transpor 99.8 6.6E-21 1.4E-25 168.7 3.2 159 99-276 2-190 (209)
323 TIGR01187 potA spermidine/putr 99.8 6.4E-21 1.4E-25 189.4 3.1 150 134-307 1-184 (325)
324 PRK13409 putative ATPase RIL; 99.8 5.8E-21 1.2E-25 203.2 2.8 161 97-294 338-527 (590)
325 PLN03211 ABC transporter G-25; 99.8 2.2E-20 4.7E-25 201.2 7.2 177 102-308 71-291 (659)
326 TIGR03771 anch_rpt_ABC anchore 99.8 2E-20 4.4E-25 176.2 6.2 156 124-307 1-195 (223)
327 COG4107 PhnK ABC-type phosphon 99.8 5.9E-20 1.3E-24 160.4 8.2 188 96-307 3-235 (258)
328 cd03236 ABC_RNaseL_inhibitor_d 99.8 1.3E-20 2.7E-25 180.9 3.7 170 103-294 4-212 (255)
329 PRK11147 ABC transporter ATPas 99.8 8.2E-21 1.8E-25 204.8 2.1 173 97-306 317-520 (635)
330 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 8.8E-21 1.9E-25 201.6 2.2 170 97-303 320-520 (552)
331 PRK10535 macrolide transporter 99.8 4.9E-21 1.1E-25 206.7 -0.1 186 98-306 3-225 (648)
332 PRK10636 putative ABC transpor 99.8 8.8E-21 1.9E-25 204.3 1.0 171 97-303 310-506 (638)
333 COG4586 ABC-type uncharacteriz 99.8 1.3E-19 2.8E-24 168.9 8.2 170 114-307 37-240 (325)
334 PRK11288 araG L-arabinose tran 99.8 2.3E-20 4.9E-25 196.3 3.5 180 99-306 257-478 (501)
335 PRK10938 putative molybdenum t 99.8 7.2E-21 1.6E-25 199.6 -0.3 185 96-305 257-484 (490)
336 PRK10982 galactose/methyl gala 99.8 7.6E-21 1.6E-25 199.5 -0.8 181 97-304 248-471 (491)
337 PRK10522 multidrug transporter 99.8 1.1E-20 2.3E-25 200.8 -0.0 182 99-307 322-532 (547)
338 TIGR01271 CFTR_protein cystic 99.8 2.1E-20 4.6E-25 217.3 2.0 185 99-310 1217-1437(1490)
339 PRK11147 ABC transporter ATPas 99.8 7.3E-20 1.6E-24 197.4 5.5 182 98-304 2-233 (635)
340 PTZ00265 multidrug resistance 99.8 3.5E-20 7.5E-25 214.3 2.8 173 99-294 382-652 (1466)
341 TIGR01194 cyc_pep_trnsptr cycl 99.8 3E-20 6.4E-25 197.7 2.0 181 99-305 337-551 (555)
342 COG4172 ABC-type uncharacteriz 99.8 7.3E-20 1.6E-24 178.4 4.3 233 96-345 3-286 (534)
343 PRK15439 autoinducer 2 ABC tra 99.8 1.4E-19 3.1E-24 190.6 6.9 180 97-306 266-485 (510)
344 PRK10636 putative ABC transpor 99.8 4.3E-20 9.4E-25 198.9 2.8 181 99-304 1-226 (638)
345 COG4618 ArpD ABC-type protease 99.8 7.6E-20 1.6E-24 183.0 2.9 181 101-307 336-554 (580)
346 cd00267 ABC_ATPase ABC (ATP-bi 99.8 4.3E-20 9.4E-25 164.4 0.6 137 104-294 4-153 (157)
347 TIGR00955 3a01204 The Eye Pigm 99.8 1.9E-19 4E-24 193.5 4.9 167 115-308 39-251 (617)
348 PRK13409 putative ATPase RIL; 99.8 8E-20 1.7E-24 194.5 1.9 170 104-294 78-284 (590)
349 COG5265 ATM1 ABC-type transpor 99.8 1.4E-19 3E-24 177.4 2.1 184 100-310 263-483 (497)
350 PLN03073 ABC transporter F fam 99.8 2.3E-19 5.1E-24 194.4 2.7 168 97-303 506-703 (718)
351 COG0488 Uup ATPase components 99.7 8E-19 1.7E-23 182.8 5.8 150 97-276 1-210 (530)
352 TIGR00956 3a01205 Pleiotropic 99.7 9.2E-20 2E-24 210.5 -1.4 195 99-324 759-1001(1394)
353 TIGR00954 3a01203 Peroxysomal 99.7 4E-19 8.6E-24 192.2 3.3 161 98-294 450-651 (659)
354 PLN03140 ABC transporter G fam 99.7 6.9E-18 1.5E-22 194.7 8.8 178 115-325 179-432 (1470)
355 KOG0059 Lipid exporter ABCA1 a 99.7 2.6E-18 5.6E-23 190.9 3.9 188 98-309 563-783 (885)
356 TIGR00956 3a01205 Pleiotropic 99.7 8E-18 1.7E-22 194.5 7.5 179 115-324 75-304 (1394)
357 PLN03140 ABC transporter G fam 99.7 1.9E-18 4.2E-23 199.2 1.6 181 115-325 894-1119(1470)
358 TIGR00957 MRP_assoc_pro multi 99.7 3.2E-18 6.9E-23 199.8 3.4 171 99-308 636-845 (1522)
359 KOG0054 Multidrug resistance-a 99.7 4.1E-18 8.8E-23 190.9 3.9 186 99-310 1138-1359(1381)
360 PLN03130 ABC transporter C fam 99.7 7.2E-18 1.6E-22 196.9 5.5 172 99-309 614-824 (1622)
361 COG4136 ABC-type uncharacteriz 99.7 1.6E-18 3.5E-23 147.9 -1.1 156 99-275 2-194 (213)
362 PLN03232 ABC transporter C fam 99.7 7.3E-18 1.6E-22 196.5 3.0 172 100-309 615-824 (1495)
363 COG0488 Uup ATPase components 99.7 5.3E-17 1.1E-21 169.3 8.0 165 97-294 319-509 (530)
364 cd03238 ABC_UvrA The excision 99.7 4.1E-17 9E-22 147.6 5.2 137 114-294 8-161 (176)
365 TIGR01271 CFTR_protein cystic 99.7 4.8E-17 1E-21 189.5 6.9 155 115-308 440-631 (1490)
366 PLN03073 ABC transporter F fam 99.7 9.1E-18 2E-22 182.1 0.0 186 96-303 174-420 (718)
367 COG4778 PhnL ABC-type phosphon 99.6 3.6E-17 7.7E-22 142.5 1.9 177 99-294 4-225 (235)
368 cd03278 ABC_SMC_barmotin Barmo 99.6 5.9E-16 1.3E-20 143.0 7.1 154 122-300 16-194 (197)
369 COG4615 PvdE ABC-type sideroph 99.6 4.6E-17 9.9E-22 158.5 -1.8 185 99-310 322-534 (546)
370 COG4138 BtuD ABC-type cobalami 99.6 1.1E-15 2.3E-20 134.0 5.6 176 122-322 18-229 (248)
371 KOG0061 Transporter, ABC super 99.6 8.6E-16 1.9E-20 164.1 5.5 168 115-308 44-255 (613)
372 PTZ00243 ABC transporter; Prov 99.6 1.5E-15 3.3E-20 177.3 6.5 154 115-307 674-864 (1560)
373 KOG0054 Multidrug resistance-a 99.5 5E-15 1.1E-19 166.3 6.1 172 99-309 518-727 (1381)
374 cd03270 ABC_UvrA_I The excisio 99.5 3E-15 6.5E-20 141.3 3.7 63 226-294 134-211 (226)
375 COG4178 ABC-type uncharacteriz 99.5 1.3E-14 2.7E-19 151.2 6.3 166 97-281 390-579 (604)
376 cd03279 ABC_sbcCD SbcCD and ot 99.5 3.7E-14 8E-19 132.7 5.6 72 223-302 117-211 (213)
377 PF00005 ABC_tran: ABC transpo 99.5 4.9E-16 1.1E-20 134.7 -7.3 110 121-246 3-135 (137)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.4 8E-14 1.7E-18 132.9 4.2 67 226-298 155-237 (243)
379 KOG2750 Uncharacterized conser 99.4 2.2E-12 4.8E-17 130.6 14.2 141 128-275 206-351 (587)
380 KOG0066 eIF2-interacting prote 99.4 1E-13 2.2E-18 136.6 4.4 153 96-275 583-760 (807)
381 COG1245 Predicted ATPase, RNas 99.4 2.3E-13 4.9E-18 135.1 6.8 168 97-294 340-529 (591)
382 cd03271 ABC_UvrA_II The excisi 99.4 1.8E-13 3.9E-18 131.3 5.9 166 121-294 13-244 (261)
383 KOG0927 Predicted transporter 99.4 2E-13 4.4E-18 138.1 6.4 161 97-284 387-575 (614)
384 KOG0065 Pleiotropic drug resis 99.4 2.1E-13 4.5E-18 150.5 6.6 181 115-326 805-1031(1391)
385 COG1129 MglA ABC-type sugar tr 99.4 3.2E-13 7E-18 138.1 7.1 162 121-304 277-481 (500)
386 cd03240 ABC_Rad50 The catalyti 99.4 3.8E-13 8.2E-18 125.0 6.8 153 124-294 18-195 (204)
387 cd03283 ABC_MutS-like MutS-lik 99.3 7E-12 1.5E-16 115.9 11.7 124 124-275 20-147 (199)
388 KOG2355 Predicted ABC-type tra 99.3 6.8E-13 1.5E-17 119.3 1.1 183 99-304 13-228 (291)
389 cd03273 ABC_SMC2_euk Eukaryoti 99.2 2.4E-12 5.1E-17 123.5 2.8 65 226-296 163-243 (251)
390 cd03274 ABC_SMC4_euk Eukaryoti 99.2 2.3E-12 5.1E-17 120.3 1.5 52 239-296 151-204 (212)
391 KOG0060 Long-chain acyl-CoA tr 99.2 3.9E-11 8.5E-16 122.5 9.7 162 98-276 432-627 (659)
392 COG4170 SapD ABC-type antimicr 99.2 4.6E-12 1E-16 114.3 2.5 177 113-307 19-242 (330)
393 KOG0927 Predicted transporter 99.2 8.4E-12 1.8E-16 126.5 4.3 168 99-294 75-292 (614)
394 COG2401 ABC-type ATPase fused 99.2 5E-11 1.1E-15 117.4 9.3 163 101-275 379-567 (593)
395 COG3845 ABC-type uncharacteriz 99.1 4.6E-11 9.9E-16 120.4 5.4 187 97-306 255-485 (501)
396 cd03275 ABC_SMC1_euk Eukaryoti 99.1 1.5E-10 3.2E-15 110.8 8.2 63 228-296 154-233 (247)
397 cd03280 ABC_MutS2 MutS2 homolo 99.1 2.3E-10 4.9E-15 106.0 8.8 143 122-303 20-169 (200)
398 PRK00635 excinuclease ABC subu 99.1 1.5E-10 3.2E-15 134.0 9.1 75 227-307 807-900 (1809)
399 cd03276 ABC_SMC6_euk Eukaryoti 99.1 3.1E-11 6.8E-16 111.5 2.8 68 226-299 106-193 (198)
400 PRK00349 uvrA excinuclease ABC 99.1 1.5E-10 3.3E-15 128.4 7.8 75 227-307 828-921 (943)
401 KOG0062 ATPase component of AB 99.1 8.8E-12 1.9E-16 125.6 -2.1 159 100-281 81-261 (582)
402 cd03243 ABC_MutS_homologs The 99.1 1.4E-09 3.1E-14 100.8 12.1 125 122-276 22-151 (202)
403 COG1245 Predicted ATPase, RNas 99.1 2.9E-10 6.2E-15 113.4 7.6 152 126-294 97-286 (591)
404 KOG0062 ATPase component of AB 99.1 1.8E-10 3.8E-15 116.4 6.1 180 99-305 362-560 (582)
405 cd03277 ABC_SMC5_euk Eukaryoti 99.0 2.1E-10 4.6E-15 107.2 5.8 66 226-296 123-207 (213)
406 TIGR00630 uvra excinuclease AB 99.0 5.3E-10 1.2E-14 123.8 8.1 75 227-307 826-919 (924)
407 TIGR02858 spore_III_AA stage I 98.9 3.4E-09 7.5E-14 102.2 10.0 134 130-294 112-255 (270)
408 KOG0064 Peroxisomal long-chain 98.9 9.3E-10 2E-14 111.4 6.1 143 121-282 500-676 (728)
409 KOG0065 Pleiotropic drug resis 98.9 3.4E-09 7.3E-14 117.8 10.9 164 121-309 133-347 (1391)
410 cd03284 ABC_MutS1 MutS1 homolo 98.9 1.2E-08 2.6E-13 95.6 11.6 127 121-281 23-158 (216)
411 PF03205 MobB: Molybdopterin g 98.9 5.1E-09 1.1E-13 91.2 6.9 48 130-177 1-49 (140)
412 cd03282 ABC_MSH4_euk MutS4 hom 98.8 3.1E-08 6.8E-13 91.9 12.1 34 121-154 21-54 (204)
413 cd03227 ABC_Class2 ABC-type Cl 98.8 1.1E-08 2.3E-13 91.6 8.4 52 237-294 99-153 (162)
414 cd03281 ABC_MSH5_euk MutS5 hom 98.8 2.6E-08 5.5E-13 93.2 11.1 116 130-275 30-153 (213)
415 cd03287 ABC_MSH3_euk MutS3 hom 98.8 6.2E-08 1.3E-12 91.0 11.8 132 121-282 23-160 (222)
416 cd03239 ABC_SMC_head The struc 98.8 1.1E-07 2.3E-12 86.4 12.6 52 237-294 116-170 (178)
417 cd00820 PEPCK_HprK Phosphoenol 98.7 2.1E-09 4.5E-14 88.6 0.1 33 116-150 4-36 (107)
418 PRK07721 fliI flagellum-specif 98.6 9.1E-08 2E-12 98.3 9.3 156 116-306 148-336 (438)
419 smart00534 MUTSac ATPase domai 98.6 8.5E-07 1.8E-11 81.1 13.0 115 132-277 2-123 (185)
420 TIGR03238 dnd_assoc_3 dnd syst 98.6 2.1E-08 4.6E-13 102.2 2.6 56 110-181 15-71 (504)
421 cd03285 ABC_MSH2_euk MutS2 hom 98.6 2.2E-07 4.7E-12 87.5 8.7 32 121-152 22-53 (222)
422 cd03241 ABC_RecN RecN ATPase i 98.6 3.4E-07 7.3E-12 89.1 10.3 58 237-300 192-251 (276)
423 KOG0063 RNAse L inhibitor, ABC 98.5 1.6E-07 3.4E-12 93.4 6.8 145 127-295 365-531 (592)
424 TIGR01069 mutS2 MutS2 family p 98.5 5.1E-07 1.1E-11 99.2 10.5 128 122-278 314-447 (771)
425 COG3910 Predicted ATPase [Gene 98.5 1.3E-06 2.9E-11 78.1 10.9 158 128-306 36-210 (233)
426 PRK08533 flagellar accessory p 98.5 6.8E-07 1.5E-11 84.6 9.3 43 126-169 21-64 (230)
427 PRK00635 excinuclease ABC subu 98.5 8.4E-07 1.8E-11 103.6 11.5 73 229-309 1699-1792(1809)
428 PF02463 SMC_N: RecF/RecN/SMC 98.4 3E-07 6.5E-12 86.2 5.6 55 240-300 161-217 (220)
429 cd03286 ABC_MSH6_euk MutS6 hom 98.4 2E-06 4.4E-11 80.5 11.0 33 121-153 22-54 (218)
430 PRK13695 putative NTPase; Prov 98.3 1.2E-05 2.7E-10 72.5 13.4 29 131-159 2-30 (174)
431 cd03242 ABC_RecF RecF is a rec 98.3 1.1E-06 2.3E-11 85.3 6.5 36 239-275 212-248 (270)
432 cd01120 RecA-like_NTPases RecA 98.3 4.7E-06 1E-10 73.3 10.1 38 131-168 1-38 (165)
433 cd01130 VirB11-like_ATPase Typ 98.3 6.2E-07 1.3E-11 82.0 3.4 40 125-176 21-60 (186)
434 COG0178 UvrA Excinuclease ATPa 98.2 3.9E-06 8.4E-11 89.7 9.6 73 229-309 822-915 (935)
435 PRK06067 flagellar accessory p 98.2 2.2E-05 4.8E-10 74.4 12.2 42 126-167 22-63 (234)
436 cd01124 KaiC KaiC is a circadi 98.1 4.4E-06 9.5E-11 75.9 6.3 42 131-172 1-42 (187)
437 PRK10416 signal recognition pa 98.1 5E-06 1.1E-10 82.3 6.3 43 127-169 112-154 (318)
438 PRK14723 flhF flagellar biosyn 98.0 8.2E-05 1.8E-09 80.9 14.7 47 122-168 178-226 (767)
439 TIGR00750 lao LAO/AO transport 98.0 9.2E-06 2E-10 80.0 6.4 48 122-169 27-74 (300)
440 cd00009 AAA The AAA+ (ATPases 98.0 3E-05 6.6E-10 66.2 8.3 28 127-154 17-44 (151)
441 TIGR01425 SRP54_euk signal rec 98.0 8E-05 1.7E-09 76.2 12.5 41 129-169 100-140 (429)
442 PRK12726 flagellar biosynthesi 97.9 1.4E-05 3.1E-10 79.9 6.2 47 123-169 200-246 (407)
443 PRK04296 thymidine kinase; Pro 97.9 0.00012 2.7E-09 67.1 11.6 35 129-163 2-36 (190)
444 cd01128 rho_factor Transcripti 97.9 2.8E-05 6.1E-10 74.3 7.1 29 124-152 11-39 (249)
445 KOG0066 eIF2-interacting prote 97.9 3.2E-06 6.9E-11 84.4 0.6 34 122-155 283-316 (807)
446 PRK06995 flhF flagellar biosyn 97.9 1.9E-05 4.1E-10 82.0 6.3 46 122-167 249-296 (484)
447 PRK00409 recombination and DNA 97.9 6.8E-05 1.5E-09 82.9 11.0 120 129-277 327-451 (782)
448 PF03029 ATP_bind_1: Conserved 97.9 1.2E-05 2.5E-10 76.5 4.1 39 134-172 1-39 (238)
449 TIGR01026 fliI_yscN ATPase Fli 97.9 1.6E-05 3.5E-10 81.9 5.2 41 124-176 158-198 (440)
450 cd03114 ArgK-like The function 97.8 2.7E-05 5.8E-10 68.5 5.1 39 131-169 1-39 (148)
451 PF13555 AAA_29: P-loop contai 97.8 2.4E-05 5.1E-10 57.8 3.7 25 128-152 22-46 (62)
452 KOG0063 RNAse L inhibitor, ABC 97.8 6.2E-05 1.4E-09 75.3 7.7 138 126-275 97-272 (592)
453 TIGR03499 FlhF flagellar biosy 97.8 3.4E-05 7.3E-10 75.3 5.8 42 127-168 192-235 (282)
454 PRK00889 adenylylsulfate kinas 97.8 3.6E-05 7.8E-10 69.5 5.4 40 127-166 2-41 (175)
455 PRK00300 gmk guanylate kinase; 97.8 3.2E-05 6.9E-10 71.6 5.1 26 127-152 3-28 (205)
456 PRK09862 putative ATP-dependen 97.7 1.3E-05 2.8E-10 83.8 2.4 61 103-179 188-248 (506)
457 PF00488 MutS_V: MutS domain V 97.7 0.0002 4.4E-09 67.9 10.1 131 122-282 36-172 (235)
458 PRK11889 flhF flagellar biosyn 97.7 4.6E-05 1E-09 76.6 6.0 42 128-169 240-281 (436)
459 TIGR00064 ftsY signal recognit 97.7 4.9E-05 1.1E-09 73.7 5.9 42 126-167 69-110 (272)
460 PRK09825 idnK D-gluconate kina 97.7 3E-05 6.5E-10 70.3 4.2 25 128-152 2-26 (176)
461 cd02025 PanK Pantothenate kina 97.7 3.6E-05 7.7E-10 72.4 4.7 22 131-152 1-22 (220)
462 TIGR00235 udk uridine kinase. 97.7 3.1E-05 6.8E-10 71.9 4.3 26 127-152 4-29 (207)
463 TIGR03018 pepcterm_TyrKin exop 97.7 0.0022 4.8E-08 59.5 16.6 46 127-172 33-80 (207)
464 PRK09183 transposase/IS protei 97.7 5E-05 1.1E-09 73.1 5.6 42 122-164 96-137 (259)
465 TIGR02655 circ_KaiC circadian 97.7 7.8E-05 1.7E-09 78.3 7.5 154 126-295 18-190 (484)
466 TIGR00176 mobB molybdopterin-g 97.7 5.5E-05 1.2E-09 67.1 5.4 48 131-178 1-48 (155)
467 PRK09270 nucleoside triphospha 97.7 3.5E-05 7.6E-10 72.8 4.2 33 127-171 31-63 (229)
468 PRK14722 flhF flagellar biosyn 97.7 0.00012 2.5E-09 73.9 7.9 47 122-168 130-178 (374)
469 PRK09435 membrane ATPase/prote 97.7 6.4E-05 1.4E-09 74.7 5.7 43 128-170 55-97 (332)
470 PTZ00132 GTP-binding nuclear p 97.7 0.00011 2.4E-09 68.5 7.1 28 238-265 171-204 (215)
471 TIGR00554 panK_bact pantothena 97.7 3.2E-05 6.9E-10 75.4 3.5 25 128-152 61-85 (290)
472 cd02023 UMPK Uridine monophosp 97.7 4.7E-05 1E-09 70.1 4.5 34 131-166 1-34 (198)
473 PRK05480 uridine/cytidine kina 97.6 6.8E-05 1.5E-09 69.7 5.3 38 127-166 4-41 (209)
474 PRK10078 ribose 1,5-bisphospho 97.6 3.9E-05 8.4E-10 70.1 3.5 24 129-152 2-25 (186)
475 smart00382 AAA ATPases associa 97.6 4.7E-05 1E-09 64.4 3.8 25 129-153 2-26 (148)
476 PRK06793 fliI flagellum-specif 97.6 0.00011 2.5E-09 75.2 7.1 64 99-178 130-193 (432)
477 PF00448 SRP54: SRP54-type pro 97.6 0.00025 5.5E-09 65.4 8.7 38 131-168 3-40 (196)
478 PRK06893 DNA replication initi 97.6 0.00034 7.4E-09 66.1 9.7 38 128-165 38-75 (229)
479 PRK03846 adenylylsulfate kinas 97.6 8E-05 1.7E-09 68.7 5.3 27 127-153 22-48 (198)
480 PRK06002 fliI flagellum-specif 97.6 1.6E-05 3.4E-10 81.6 0.5 62 99-176 139-200 (450)
481 PRK10751 molybdopterin-guanine 97.6 0.00011 2.4E-09 66.1 5.9 40 128-167 5-44 (173)
482 PRK05703 flhF flagellar biosyn 97.6 9E-05 2E-09 76.3 5.7 44 126-169 218-263 (424)
483 PRK13768 GTPase; Provisional 97.6 0.00011 2.4E-09 70.6 5.7 42 131-172 4-45 (253)
484 PRK06731 flhF flagellar biosyn 97.6 6.6E-05 1.4E-09 72.5 4.1 43 127-169 73-115 (270)
485 PRK06526 transposase; Provisio 97.6 0.00046 1E-08 66.2 9.9 37 126-162 95-131 (254)
486 PRK05541 adenylylsulfate kinas 97.6 0.00013 2.8E-09 65.8 5.8 38 126-163 4-41 (176)
487 KOG1534 Putative transcription 97.5 7.1E-05 1.5E-09 68.2 3.6 45 131-175 5-49 (273)
488 TIGR03263 guanyl_kin guanylate 97.5 6.7E-05 1.4E-09 67.9 3.4 24 129-152 1-24 (180)
489 PRK12727 flagellar biosynthesi 97.5 0.00015 3.2E-09 75.7 5.9 43 126-168 347-391 (559)
490 TIGR03015 pepcterm_ATPase puta 97.5 0.0011 2.5E-08 63.7 11.9 24 129-152 43-66 (269)
491 PRK13830 conjugal transfer pro 97.5 0.0016 3.5E-08 72.7 14.5 38 130-167 457-495 (818)
492 PRK08903 DnaA regulatory inact 97.5 0.00032 6.9E-09 66.0 7.7 39 127-165 40-78 (227)
493 TIGR02788 VirB11 P-type DNA tr 97.5 4.8E-05 1E-09 75.2 2.2 40 123-174 138-177 (308)
494 cd03115 SRP The signal recogni 97.5 0.00018 3.8E-09 64.8 5.6 39 131-169 2-40 (173)
495 cd03116 MobB Molybdenum is an 97.5 0.00018 4E-09 64.0 5.5 48 130-177 2-49 (159)
496 PRK05399 DNA mismatch repair p 97.5 0.0011 2.3E-08 74.3 12.6 31 121-152 600-630 (854)
497 cd02019 NK Nucleoside/nucleoti 97.5 0.00018 3.8E-09 54.6 4.5 33 131-165 1-33 (69)
498 TIGR00767 rho transcription te 97.4 3.5E-05 7.5E-10 77.7 0.2 53 99-152 130-191 (415)
499 TIGR00959 ffh signal recogniti 97.4 0.001 2.2E-08 68.4 10.9 40 130-169 100-140 (428)
500 KOG1533 Predicted GTPase [Gene 97.4 0.00017 3.6E-09 66.9 4.4 43 132-174 5-47 (290)
No 1
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-96 Score=697.88 Aligned_cols=411 Identities=57% Similarity=0.953 Sum_probs=396.5
Q ss_pred EEEEeCCCCeEEEEEcC-eeEEEEEEeeeEEEeceecCCCCeEEeCCCCeEEEEeeeCcEEEEeeccceeeeeCCCCchh
Q 013511 23 KQVKLERESELRIEVGE-MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVS 101 (441)
Q Consensus 23 ~~~~l~~~~e~r~e~~~-~~~~i~l~~G~aeifG~eL~~~~~~~~~~~~~~~i~t~~g~~l~i~g~~~~~y~~~~~~ml~ 101 (441)
+.+.|++++|||||+.. +++.++|++|.|||||+||+.+++|+|+.+.|++||||+||+|+++|.++.+|++.+|||..
T Consensus 2 ~~~~L~k~sElRiev~~~~~l~l~lvsG~AEIFGtEL~~~~~ytF~~~~k~aifTw~Gctlev~G~t~~~YVs~eTpM~~ 81 (415)
T KOG2749|consen 2 KEIVLEKESELRIEVEETQPLQLRLVSGLAEIFGTELALEKWYTFPNGMKVAIFTWQGCTLEVEGTTEVEYVSDETPMVL 81 (415)
T ss_pred CceEecCCCeEEEEEcCCCcEEEEEeccchhhhccccccCCceecCCCceEEEEEEeccEEEEeccccceEecCCCChhh
Confidence 45899999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
|.|+|+.+++.|..+.+. -..||+++|+||.++|||||||+|+|||+|.||+|+|||+||+||.+++||++++.
T Consensus 82 ylNlH~ale~~R~~~e~~------~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~ 155 (415)
T KOG2749|consen 82 YLNLHAALEKRRMQAEEE------SSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAI 155 (415)
T ss_pred hhhHHHHHHHHhhhhhhh------hccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhhe
Confidence 999999999988665432 46799999999999999999999999999999999999999999999999999999
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCCCCCCchhHHHHHHHH
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAI 261 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~~~lD~~~~~~l~~li 261 (441)
+++.+++..+|+....|+.++||+.|+.+|+.+|...+++|++.+.++++.+.+.|++++|+|+++|+++.++..|.++|
T Consensus 156 ~i~~~~D~~eGf~l~~pLV~~FG~~sp~~N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~~egy~~llhai 235 (415)
T KOG2749|consen 156 PIEMPLDVIEGFSLTAPLVYNFGLTSPSTNLELYKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIEGEGYAALLHAI 235 (415)
T ss_pred ecccccchhhCcccCCceeeeccCCCCCcCHHHHHHHHHHHHHHHHHHhccCchhcccceEEeccceeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcC-CCCCCCceeEEeecCc
Q 013511 262 DTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYG-LTNDLSPHANVANFSD 340 (441)
Q Consensus 262 ~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g-~~~~l~p~~~~~~~~~ 340 (441)
++|+.+.|||++|++|+++|.+.+.....+.++++||+|++++|+.+.+++.|...+++|||| .+++|+|+++.++|+|
T Consensus 236 ~~f~v~vviVLg~ErLy~~lkk~~~~~~~v~vv~lpKsgGv~~Rs~~~r~~~r~~~I~eYFYG~~~~~lsP~t~~Vkf~D 315 (415)
T KOG2749|consen 236 KAFEVDVVIVLGQERLYSSLKKDLPPKKNVRVVKLPKSGGVVARSKEVRRKLRGRSIREYFYGSVRNELSPFTFNVKFSD 315 (415)
T ss_pred HHcCccEEEEeccHHHHHHHHhhccccccceEEEecCCCCeEeehHHHHHHHhhhhHHHhcccccCCcccceeEeeecce
Confidence 999999999999999999999998877899999999999999999999999999999999999 4559999999999999
Q ss_pred eEEEEEcCCCCCCCcCccCCCCCCCCCceEEecCCChhccccEEEEEecCChhh-hhccCceEEEEEEEeecCCCeEEEE
Q 013511 341 FLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQ-IISSNVAGFIFVTNVDTQRKTITYL 419 (441)
Q Consensus 341 l~~~~~~~~~~~p~s~lp~g~~~~~~~~~~~~v~~s~~l~~~ilav~~~~~~~~-~~~~~v~Gf~~V~~Vd~~~~~~~il 419 (441)
+++||+| ++.+|+|+||.|.+.+.+++++.+|+++.+|+|+|||||.|+.+|| +..|+|+||++|++||.+++++++|
T Consensus 316 l~v~rig-a~~~p~S~lp~g~~~e~~~~k~~~vt~~~~l~h~vLAiS~A~~~ed~Vi~S~V~Gfv~VteVd~~~~kit~l 394 (415)
T KOG2749|consen 316 LTVYRIG-APQAPDSCLPLGMTRENNQLKLVPVTITERLQHHVLAISFAEEPEDNVIKSPVAGFVLVTEVDLEKRKITVL 394 (415)
T ss_pred EEEEEec-CCCCCccccccccccccCceEEEecccCHHHheeeEEEEecccchhhhhcCcceeEEEEEeccchheeEEEe
Confidence 9999999 6799999999999999999999999999999999999999998887 9999999999999999999999999
Q ss_pred ccCCCCCCCceEEeecccccc
Q 013511 420 APSPGMLPSKYLIAGTLTWLE 440 (441)
Q Consensus 420 ~P~~~~lp~~~li~g~~~~~~ 440 (441)
+|+|++||+++||+|+++|+|
T Consensus 395 sP~p~~LPsk~Li~g~l~~~e 415 (415)
T KOG2749|consen 395 SPVPRTLPSKALILGDLKWLE 415 (415)
T ss_pred cCCCCCCCcceEEeeeeeecC
Confidence 999999999999999999997
No 2
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-71 Score=513.72 Aligned_cols=404 Identities=31% Similarity=0.502 Sum_probs=357.0
Q ss_pred EEEEeCCCCeEEEEEcC-eeEEEEEEeeeEEEeceecCCCCeEEeCCCCeEEEEeeeCcEEEEeeccceeeeeCCCCchh
Q 013511 23 KQVKLERESELRIEVGE-MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVS 101 (441)
Q Consensus 23 ~~~~l~~~~e~r~e~~~-~~~~i~l~~G~aeifG~eL~~~~~~~~~~~~~~~i~t~~g~~l~i~g~~~~~y~~~~~~ml~ 101 (441)
.++.|++++||||||.. +.++|+|+||.|||||+||+.+.||+| ++.|++||||+||++.++|.+...|+++.+||..
T Consensus 2 ~ei~ipk~~ewriev~e~~kl~v~vvSG~aEifGtELa~~~~Y~F-~n~K~~Iyt~~gc~L~veg~~~~~yv~~~tpm~~ 80 (424)
T COG5623 2 MEIRIPKNQEWRIEVNETQKLKVMVVSGLAEIFGTELANERWYAF-RNTKTFIYTFSGCKLKVEGACDLQYVSDTTPMPL 80 (424)
T ss_pred ceeEcCCCCeeEEEeCCCccEEEEEeecchhhhchhhccCCceee-eeeeeeEEEEeccEEEEecCccceeeecCcchhh
Confidence 46789999999999998 899999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+|+.+++.|. . + .+.|++++|+|++.+||||+|++|.+||+|.+++|+|+++||+|.-..+||++++.
T Consensus 81 i~Nlhf~lek~rm--~-----n--~e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~Qp~~~~PG~iSa~ 151 (424)
T COG5623 81 IFNLHFFLEKRRM--F-----N--YEKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAI 151 (424)
T ss_pred hhhHHHHHHhhcc--c-----c--cccCCEEEEECCCcCCceeHHHHHHHHHHHhcCCceEEecCCCCcccccCcccccc
Confidence 9999999999862 2 2 35899999999999999999999999999999999999999999999999999988
Q ss_pred eccCcCCCCCCC------------CcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCC--C
Q 013511 182 PIELPIDPVEGI------------PLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTM--G 247 (441)
Q Consensus 182 ~~~~~~~~~~~~------------~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~--~ 247 (441)
+++.-++...+. ....|+.+.||..++.||..+|.....+|...+.++++..++.|.++++.|++ +
T Consensus 152 h~~~ilD~q~~~wGqSltsGaTll~~K~Plv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl~~d~r~sgC~vdTpSIs 231 (424)
T COG5623 152 HVDAILDCQEGLWGQSLTSGATLLRLKNPLVFNFGLTEITENMELYDLQTSKLQEAVKARNHLVEDLRLSGCPVDTPSIS 231 (424)
T ss_pred chhhhhhhhcccccccccccchhhhccCceEEecccCccccCHHHHHHHHHHHHHHHHhhhccCccceeecCccCCcchh
Confidence 776655544332 34688999999999999999999999999999999999999999999999994 5
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcCCCC
Q 013511 248 WIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTN 327 (441)
Q Consensus 248 ~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g~~~ 327 (441)
.+|..-++....+|++|+.+.|+|++++++|+.+...+.....-.|+++++.+++++++.+..+..+...+++||||..+
T Consensus 232 qldEnla~~~htiI~~f~vnivvVlgsErLy~s~k~~~~~~~~n~iffiskldG~~~ve~e~~rslQrrsI~~YFyGs~~ 311 (424)
T COG5623 232 QLDENLAAFYHTIIKRFEVNIVVVLGSERLYHSLKVIAEKLMINRIFFISKLDGFVEVEKEVGRSLQRRSISRYFYGSVN 311 (424)
T ss_pred hhhHHHHHHHHHHHHheeeeEEEEEcchHHHHHHHHHHhHHhhhheeeecccCCeeehHHHHHHHHHHhHHHHHhcccCC
Confidence 67776667777799999999999999999999998776544333477889999999999988889999999999999655
Q ss_pred -CCCceeEEeecCceEEEEEcCCCCCCCcCccCCCCCCCCCceEEecCCChhccccEEEEEecCChhh---hhccCceEE
Q 013511 328 -DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSYAKDADQ---IISSNVAGF 403 (441)
Q Consensus 328 -~l~p~~~~~~~~~l~~~~~~~~~~~p~s~lp~g~~~~~~~~~~~~v~~s~~l~~~ilav~~~~~~~~---~~~~~v~Gf 403 (441)
+|+|+++.++..++.+|+. +...++-+++|.|.......+.-..+ .-|+|+|+||+.|...+| +..|+|+||
T Consensus 312 ~~lsP~t~~Vdy~~lvv~~~-e~~~~nvs~~~~G~~e~~~~v~t~~~---~vlqnsIlais~a~e~eDqATV~~SpIlGy 387 (424)
T COG5623 312 NELSPFTFNVDYKWLVVRIG-EMYVANVSALPLGSTEKVGCVETSDV---EVLQNSILAISEAREIEDQATVAGSPILGY 387 (424)
T ss_pred CccCceEEeecceEEEEEEe-ecccCccccccccceeeeeeEecccH---HHhhhheeeeehhhhccccceecCCceeEE
Confidence 9999999999999999885 35667889999987532222211111 237899999999987666 999999999
Q ss_pred EEEEEeecCCCeEEEEccCCCCCCCceEEeecccccc
Q 013511 404 IFVTNVDTQRKTITYLAPSPGMLPSKYLIAGTLTWLE 440 (441)
Q Consensus 404 ~~V~~Vd~~~~~~~il~P~~~~lp~~~li~g~~~~~~ 440 (441)
++|.+||+-|+++++|+|+|++||+++||+|+.||.|
T Consensus 388 v~v~~v~~~krklriL~pvP~~lps~alI~g~~k~~E 424 (424)
T COG5623 388 VVVINVGAFKRKLRILCPVPRLLPSTALIQGDLKHVE 424 (424)
T ss_pred EEEEEchhhhhceeEeccCCCCCCcceeeeecccccC
Confidence 9999999999999999999999999999999999987
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-35 Score=263.22 Aligned_cols=199 Identities=20% Similarity=0.303 Sum_probs=159.8
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|++|+|++. .++++ +|+++.+|++++||||+|||||||+|||.++ ..|++|+|.++|.
T Consensus 1 ~mi~i~~l~K~fg~~--~VLkg--i~l~v~~Gevv~iiGpSGSGKSTlLRclN~L------------E~~~~G~I~i~g~ 64 (240)
T COG1126 1 MMIEIKNLSKSFGDK--EVLKG--ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL------------EEPDSGSITVDGE 64 (240)
T ss_pred CeEEEEeeeEEeCCe--EEecC--cceeEcCCCEEEEECCCCCCHHHHHHHHHCC------------cCCCCceEEECCE
Confidence 478899999999987 57765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeecc-CcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------------HHHHHHHHHHHhccCcc
Q 013511 178 IAATPIE-LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------------VKELAQMLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------------~~~l~~~~~~~ls~g~~ 235 (441)
......+ ..++.+.|++|| ...+|+|+|+.+|+.+.... +.+-++.++.+|||||+
T Consensus 65 ~~~~~~~~~~~R~~vGmVFQ--~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQq 142 (240)
T COG1126 65 DVGDKKDILKLRRKVGMVFQ--QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQ 142 (240)
T ss_pred eccchhhHHHHHHhcCeecc--cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHH
Confidence 5532211 123344555555 45799999999999886432 12335678889999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+++ +++|| |++|||+....+++.++++..+ |.+++||+ |.-+.+.+|||.++ +.|.+
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHE-----M~FAr~VadrviFm---d~G~i 214 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHE-----MGFAREVADRVIFM---DQGKI 214 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEech-----hHHHHHhhheEEEe---eCCEE
Confidence 99987 99999 9999999999999999999866 99999999 88777889999999 88878
Q ss_pred eeCChH--HHHHHHHHHHHHHh
Q 013511 303 VSRNSK--VRQKARSYRIREYF 322 (441)
Q Consensus 303 v~~~~~--~~~~~r~~~~~~yf 322 (441)
++.+++ .....++++.++|+
T Consensus 215 ie~g~p~~~f~~p~~~R~~~FL 236 (240)
T COG1126 215 IEEGPPEEFFDNPKSERTRQFL 236 (240)
T ss_pred EEecCHHHHhcCCCCHHHHHHH
Confidence 777642 23333445555554
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.97 E-value=7.5e-33 Score=254.47 Aligned_cols=200 Identities=18% Similarity=0.323 Sum_probs=164.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|++|.|+++ .++++ +||++.+|++++++||+||||||++|+|.++ +.|++|+|.++|..
T Consensus 1 MI~~~nvsk~y~~~--~av~~--v~l~I~~gef~vliGpSGsGKTTtLkMINrL------------iept~G~I~i~g~~ 64 (309)
T COG1125 1 MIEFENVSKRYGNK--KAVDD--VNLTIEEGEFLVLIGPSGSGKTTTLKMINRL------------IEPTSGEILIDGED 64 (309)
T ss_pred CceeeeeehhcCCc--eeeee--eeEEecCCeEEEEECCCCCcHHHHHHHHhcc------------cCCCCceEEECCee
Confidence 68899999999976 56665 9999999999999999999999999999999 99999999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------------------HHHHHHHHHHHhccCccc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------------------VKELAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------------------~~~l~~~~~~~ls~g~~~ 236 (441)
+.......++. .++|..+...+|+|+|+.+|+.+.... -.++.++++.+|||||+|
T Consensus 65 i~~~d~~~LRr--~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQ 142 (309)
T COG1125 65 ISDLDPVELRR--KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQ 142 (309)
T ss_pred cccCCHHHHHH--hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhh
Confidence 64433223444 455555667899999999999875332 124567888999999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+.+ +++|| +++|||..+..+.+.+.+++. .|||++||| ++++++++|++.++ +.|.+
T Consensus 143 RVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-----idEA~kLadri~vm---~~G~i 214 (309)
T COG1125 143 RVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-----IDEALKLADRIAVM---DAGEI 214 (309)
T ss_pred HHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-----HHHHHhhhceEEEe---cCCeE
Confidence 9875 99999 999999999999888888764 399999999 99999999999999 99999
Q ss_pred eeCChHHH--HHHHHHHHHHHhcC
Q 013511 303 VSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 303 v~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+..+.+.. +.+.+..++++|-.
T Consensus 215 ~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 215 VQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred EEeCCHHHHHhCccHHHHHHHhcc
Confidence 98886433 34455566665533
No 5
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.1e-32 Score=252.11 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=172.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+.+++++++++|+++ .++++ ++|++.+|++++|+||+|||||||+|+|.|+ +.|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~~--~Ild~--v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl------------l~P~~GeI~i~G 69 (263)
T COG1127 6 EPLIEVRGVTKSFGDR--VILDG--VDLDVPRGEILAILGGSGSGKSTLLRLILGL------------LRPDKGEILIDG 69 (263)
T ss_pred cceEEEeeeeeecCCE--EEecC--ceeeecCCcEEEEECCCCcCHHHHHHHHhcc------------CCCCCCeEEEcC
Confidence 5678999999999987 46655 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHHH--------HH--------------HHHHHHHHhccC
Q 013511 177 CIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVLV--------KE--------------LAQMLERQFNGN 233 (441)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------~~--------------l~~~~~~~ls~g 233 (441)
..+....+... ..+..+++.+|...+|.++|+.||+.|..+.. .+ .++.++.+||||
T Consensus 70 ~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGG 149 (263)
T COG1127 70 EDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGG 149 (263)
T ss_pred cchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcch
Confidence 87655444221 22333555566678999999999999865431 11 246778899999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+++|+++ +++|| |+++||.+...+.++|++++.. |++++||| +......||++.++ .+
T Consensus 150 M~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHD-----l~s~~~i~Drv~~L---~~ 221 (263)
T COG1127 150 MRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-----LDSLLTIADRVAVL---AD 221 (263)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECC-----hHHHHhhhceEEEE---eC
Confidence 9998875 99999 9999999999999999999864 99999999 99999999999999 99
Q ss_pred CCeeeCCh-HHHHHHHHHHHHHHhcCCCC
Q 013511 300 GGVVSRNS-KVRQKARSYRIREYFYGLTN 327 (441)
Q Consensus 300 g~vv~~~~-~~~~~~r~~~~~~yf~g~~~ 327 (441)
|+++..++ ++.....+..+++||.|.+.
T Consensus 222 gkv~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 222 GKVIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred CEEEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 99998887 45556677889999999654
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.96 E-value=6.4e-30 Score=227.58 Aligned_cols=183 Identities=19% Similarity=0.214 Sum_probs=152.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.+++|+|+.. ..++++ +||++++|++++|+|||||||||++|+|+++ +.|++|.++++|++
T Consensus 1 Ml~v~~l~K~y~~~-v~Avrd--VSF~ae~Gei~GlLG~NGAGKTT~LRmiatl------------L~P~~G~v~idg~d 65 (245)
T COG4555 1 MLEVTDLTKSYGSK-VQAVRD--VSFEAEEGEITGLLGENGAGKTTLLRMIATL------------LIPDSGKVTIDGVD 65 (245)
T ss_pred CeeeeehhhhccCH-Hhhhhh--eeEEeccceEEEEEcCCCCCchhHHHHHHHh------------ccCCCceEEEeecc
Confidence 67788999999884 457776 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH--------------------HHHHHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV--------------------KELAQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------------------~~l~~~~~~~ls~g~~~r~ 238 (441)
. ...|...++.++..+....+|..+|++||+.|+.++. .+..++....+|.|++||+
T Consensus 66 ~---~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV 142 (245)
T COG4555 66 T---VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKV 142 (245)
T ss_pred c---ccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHH
Confidence 4 3334333334443344567899999999999986541 1223455567999999987
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
++ +++|| +++||......+.+.|++++.. .||+++|. |+++.++||++.++ +.|.++..
T Consensus 143 ~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~-----m~EvealCDrvivl---h~Gevv~~ 214 (245)
T COG4555 143 AIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHI-----MQEVEALCDRVIVL---HKGEVVLE 214 (245)
T ss_pred HHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEeccc-----HHHHHHhhheEEEE---ecCcEEEc
Confidence 65 99999 9999999999999999999863 99999999 99998999999999 99999988
Q ss_pred Ch
Q 013511 306 NS 307 (441)
Q Consensus 306 ~~ 307 (441)
+.
T Consensus 215 gs 216 (245)
T COG4555 215 GS 216 (245)
T ss_pred CC
Confidence 76
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=6e-31 Score=248.67 Aligned_cols=204 Identities=17% Similarity=0.205 Sum_probs=166.8
Q ss_pred chhHHHHHHHHhhh---hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLEGR---RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~---~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
|+++++++|.|.+. ...++++ +||++.+|++++|+|.+|||||||+|++.++ -.|++|+|.++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~--vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L------------e~PtsG~v~v~ 66 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDD--VSLEIPKGEIFGIIGYSGAGKSTLLRLINLL------------ERPTSGSVFVD 66 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeecc--ceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc------------CCCCCceEEEc
Confidence 57788899988763 2357765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcC---CCCCCCCcccceEEEecccCccCCHHHHHHH--------------------HHHHHHHHHHHhcc
Q 013511 176 GCIAATPIELPI---DPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------------VKELAQMLERQFNG 232 (441)
Q Consensus 176 G~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------------~~~l~~~~~~~ls~ 232 (441)
|.++.......+ +.+.++. +|...++...|+.+|++|.+.. +.+.+++++..|||
T Consensus 67 G~di~~l~~~~Lr~~R~~IGMI--FQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSG 144 (339)
T COG1135 67 GQDLTALSEAELRQLRQKIGMI--FQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSG 144 (339)
T ss_pred CEecccCChHHHHHHHhhccEE--eccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCc
Confidence 988766544433 3334554 4555789999999999997653 12345678889999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
||+||+++ |+.|| |+.|||...+.+++++++++.. ||+++||+ |+-..++|++|.|| .
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-----m~Vvk~ic~rVavm---~ 216 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-----MEVVKRICDRVAVL---D 216 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-----HHHHHHHhhhheEe---e
Confidence 99999887 99999 9999999999999999999865 99999999 88888899999999 9
Q ss_pred CCCeeeCChH--HHHHHHHHHHHHHhcCCC
Q 013511 299 SGGVVSRNSK--VRQKARSYRIREYFYGLT 326 (441)
Q Consensus 299 ~g~vv~~~~~--~~~~~r~~~~~~yf~g~~ 326 (441)
.|.+++.++. ....+++...++++....
T Consensus 217 ~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 217 QGRLVEEGTVSEVFANPKHAITQEFIGETL 246 (339)
T ss_pred CCEEEEeccHHHhhcCcchHHHHHHHHhhc
Confidence 9999999873 334455666677665543
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=1.4e-30 Score=255.88 Aligned_cols=202 Identities=18% Similarity=0.259 Sum_probs=159.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++++.|++|.|++. .++++ +||++.+||+++++||||||||||+|+|+|+ .+|++|+|.++|
T Consensus 3 ~~~l~i~~v~k~yg~~--~av~~--isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf------------e~p~~G~I~l~G 66 (352)
T COG3842 3 KPALEIRNVSKSFGDF--TAVDD--ISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF------------EQPSSGEILLDG 66 (352)
T ss_pred CceEEEEeeeeecCCe--eEEec--ceeeecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECC
Confidence 4567889999999955 57766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------------HHHHHHHHHHHhccCcc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------------VKELAQMLERQFNGNAE 235 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------------~~~l~~~~~~~ls~g~~ 235 (441)
..+.... ..++.+.+.+|...+|+|+||.+|+.|+++. +..++++++.+|||||+
T Consensus 67 ~~i~~lp----p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQq 142 (352)
T COG3842 67 EDITDVP----PEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQ 142 (352)
T ss_pred EECCCCC----hhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHH
Confidence 8764421 2234455566667899999999999998762 22356778889999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +++|| .+.||..-++.+..-++++..+ +.|++||| -.+++..+|++.|| +.|.
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHD-----qeEAl~msDrI~Vm---~~G~ 214 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD-----QEEALAMSDRIAVM---NDGR 214 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECC-----HHHHhhhccceEEc---cCCc
Confidence 99886 99999 8999987766665555555432 77888999 77888899999999 9999
Q ss_pred eeeCChHHH--HHHHHHHHHHHhcCCCC
Q 013511 302 VVSRNSKVR--QKARSYRIREYFYGLTN 327 (441)
Q Consensus 302 vv~~~~~~~--~~~r~~~~~~yf~g~~~ 327 (441)
+...+++.. ..+.+.. -..|.|..+
T Consensus 215 I~Q~gtP~eiY~~P~~~f-VA~FiG~~N 241 (352)
T COG3842 215 IEQVGTPEEIYERPATRF-VADFIGESN 241 (352)
T ss_pred eeecCCHHHHhhCcchHH-HHHHhCcce
Confidence 988886433 3333333 445667544
No 9
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.7e-30 Score=253.85 Aligned_cols=201 Identities=17% Similarity=0.244 Sum_probs=159.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++.|++|.|++.. ++++ +|+++++||+++++||||||||||||+|+|+ .+|++|+|.++|.
T Consensus 2 ~~i~l~~v~K~yg~~~--~l~~--i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL------------e~~~~G~I~i~g~ 65 (338)
T COG3839 2 AELELKNVRKSFGSFE--VLKD--VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL------------EEPTSGEILIDGR 65 (338)
T ss_pred cEEEEeeeEEEcCCce--eeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCE
Confidence 4678899999999853 6765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------------HHHHHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------------VKELAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------------~~~l~~~~~~~ls~g~~~r 237 (441)
+... .-+.++++.+.+|...+|+|+||++|+.|.++. +..+.++.+..|||||+||
T Consensus 66 ~vt~----l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQR 141 (338)
T COG3839 66 DVTD----LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR 141 (338)
T ss_pred ECCC----CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHH
Confidence 6533 223345566666667899999999999998754 2345677788899999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +++|| .+.||..-+..+...|+++.. .++|++||| -.++...+|++.|+ +.|.+.
T Consensus 142 VAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHD-----q~EAmtladri~Vm---~~G~i~ 213 (338)
T COG3839 142 VALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHD-----QVEAMTLADRIVVM---NDGRIQ 213 (338)
T ss_pred HHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCC-----HHHHHhhCCEEEEE---eCCeee
Confidence 886 89999 899999877777777777653 388888999 77788899999999 688888
Q ss_pred eCChHHH--HHHHHHHHHHHhcCCCC
Q 013511 304 SRNSKVR--QKARSYRIREYFYGLTN 327 (441)
Q Consensus 304 ~~~~~~~--~~~r~~~~~~yf~g~~~ 327 (441)
+.+.+.. ..+.+ ..-.-|.|.+.
T Consensus 214 Q~g~p~ely~~P~n-~fVA~FiG~p~ 238 (338)
T COG3839 214 QVGTPLELYERPAN-LFVAGFIGSPP 238 (338)
T ss_pred ecCChHHHhhCccc-hhhhhhcCChh
Confidence 8776433 22222 33445667654
No 10
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.6e-30 Score=232.19 Aligned_cols=202 Identities=17% Similarity=0.256 Sum_probs=164.8
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-----CCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-----QGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-----~G~ 171 (441)
.+.+++.|+++.|+++ .++++ +++.+.++.+++++||+|||||||+|+|..+ .|.- .|+
T Consensus 5 ~~~~~~~~l~~yYg~~--~aL~~--i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm------------ndl~~~~r~~G~ 68 (253)
T COG1117 5 IPAIEVRDLNLYYGDK--HALKD--INLDIPKNKVTALIGPSGCGKSTLLRCLNRM------------NDLIPGARVEGE 68 (253)
T ss_pred cceeEecceeEEECch--hhhcc--CceeccCCceEEEECCCCcCHHHHHHHHHhh------------cccCcCceEEEE
Confidence 3457788999999977 57766 9999999999999999999999999999998 4444 399
Q ss_pred ccCCceeeeeeccC--cCCCCCCCCcccceEEEecccCccCCHHHHHHHH-----------------HHHHHHHHHH---
Q 013511 172 ITIPGCIAATPIEL--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV-----------------KELAQMLERQ--- 229 (441)
Q Consensus 172 i~~~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~-----------------~~l~~~~~~~--- 229 (441)
|.++|..+....-+ .++.+.|++||.|. -|+ +|+.||+.++.+.. ..|++.+..+
T Consensus 69 v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn--PFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~ 145 (253)
T COG1117 69 VLLDGKNIYDPKVDVVELRRRVGMVFQKPN--PFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHK 145 (253)
T ss_pred EEECCeeccCCCCCHHHHHHHheeeccCCC--CCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhC
Confidence 99999877654222 34556788888774 466 89999999986541 1233444333
Q ss_pred ----hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 230 ----FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 230 ----ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
|||||+||.++ |++|| ++.|||.+...+.++|.+++.+ +||++||+ |.++.+.+|+..+
T Consensus 146 sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHn-----mqQAaRvSD~taF 220 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHN-----MQQAARVSDYTAF 220 (253)
T ss_pred CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCC-----HHHHHHHhHhhhh
Confidence 79999999876 99999 9999999999999999999987 99999999 9999999999999
Q ss_pred EEecCCCCeeeCCh--HHHHHHHHHHHHHHhcCC
Q 013511 294 VKLQKSGGVVSRNS--KVRQKARSYRIREYFYGL 325 (441)
Q Consensus 294 l~l~~~g~vv~~~~--~~~~~~r~~~~~~yf~g~ 325 (441)
+ ..|.+++.++ .....++++..++|..|.
T Consensus 221 f---~~G~LvE~g~T~~iF~~P~~~~TedYisGr 251 (253)
T COG1117 221 F---YLGELVEFGPTDKIFTNPKHKRTEDYISGR 251 (253)
T ss_pred h---cccEEEEEcCHHhhhcCccHHHHHHHhccC
Confidence 9 7999999886 344567788889998774
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.6e-30 Score=239.51 Aligned_cols=170 Identities=19% Similarity=0.269 Sum_probs=138.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++.++++++.|+.. .++++ +||++.+||+|+|+||+|||||||+|+|+|+ .+|++|+|.++|.
T Consensus 2 ~~l~i~~v~~~f~~~--~vl~~--i~L~v~~GEfvsilGpSGcGKSTLLriiAGL------------~~p~~G~V~~~g~ 65 (248)
T COG1116 2 ALLEIEGVSKSFGGV--EVLED--INLSVEKGEFVAILGPSGCGKSTLLRLIAGL------------EKPTSGEVLLDGR 65 (248)
T ss_pred ceEEEEeeEEEeCce--EEecc--ceeEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCc
Confidence 356677888888874 67776 9999999999999999999999999999999 9999999999996
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH--------------------HHHHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV--------------------KELAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------------------~~l~~~~~~~ls~g~~~r 237 (441)
.. ..+ ....++.|| ...+|++.|+.+|+.+..... ....+.++.+|||||+||
T Consensus 66 ~v----~~p-~~~~~~vFQ--~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQR 138 (248)
T COG1116 66 PV----TGP-GPDIGYVFQ--EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQR 138 (248)
T ss_pred cc----CCC-CCCEEEEec--cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHH
Confidence 44 222 123445544 457999999999999876531 124567788899999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
+++ |++|| ++.||...+..+.+.+.++.. .||+++||| ++++..++|||.++.
T Consensus 139 VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd-----i~EAv~LsdRivvl~ 205 (248)
T COG1116 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD-----VDEAVYLADRVVVLS 205 (248)
T ss_pred HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC-----HHHHHhhhCEEEEec
Confidence 987 99999 999999888777776666532 399999999 999999999998883
No 12
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.8e-29 Score=238.19 Aligned_cols=186 Identities=18% Similarity=0.239 Sum_probs=150.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+.+.|+++.|+.. .++++ ++++++.|+.++++||||||||||+|+|+|+ ..|++|.|.++|..
T Consensus 2 ~i~i~~~~~~~~~~--~a~~d--i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL------------e~p~~G~I~~~~~~ 65 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDD--ISLDIKSGELVALLGPSGAGKSTLLRIIAGL------------ETPDAGRIRLNGRV 65 (345)
T ss_pred ceeehhhhhhcccc--ccccc--ceeeecCCcEEEEECCCCCcHHHHHHHHhCc------------CCCCCceEEECCEe
Confidence 56788999999987 46654 9999999999999999999999999999999 99999999999984
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------------------HHHHHHHHHHHhccCccc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------------------VKELAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------------------~~~l~~~~~~~ls~g~~~ 236 (441)
........ ...+.++|.+|...+|+|+|+.+|++|+... ++.++++++..|||||+|
T Consensus 66 l~D~~~~~-~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQ 144 (345)
T COG1118 66 LFDVSNLA-VRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQ 144 (345)
T ss_pred ccchhccc-hhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHH
Confidence 43322211 1223455556666799999999999998632 234667888999999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ |++|| ++.||..-+..+.+-++++... +++++||| .+++++++|+|.++ ++|.+
T Consensus 145 RVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD-----~eea~~ladrvvvl---~~G~I 216 (345)
T COG1118 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHD-----QEEALELADRVVVL---NQGRI 216 (345)
T ss_pred HHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCC-----HHHHHhhcceEEEe---cCCee
Confidence 9886 99999 9999998777777666666432 77778999 89999999999999 89998
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
...++..
T Consensus 217 eqvg~p~ 223 (345)
T COG1118 217 EQVGPPD 223 (345)
T ss_pred eeeCCHH
Confidence 8777644
No 13
>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.
Probab=99.95 E-value=6.4e-28 Score=222.57 Aligned_cols=186 Identities=39% Similarity=0.673 Sum_probs=120.1
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEEEe-CC-chhhHHHHHHhcCC---CCeEEEEecCCCCeeeCChHHHHHHHHHHHHHH
Q 013511 247 GWIEGVGYELLLHAIDTFKANVVLVL-GQ-EKLFSMLRDVLKNR---PNVDVVKLQKSGGVVSRNSKVRQKARSYRIREY 321 (441)
Q Consensus 247 ~~lD~~~~~~l~~li~~~~~~~Vivi-~h-~~l~~~l~~~~~~~---~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~y 321 (441)
||+++.|.+.+.++++.+++++||++ ++ ++++.++...+... ..+.++++++++++..+++..++..|..++++|
T Consensus 1 GWvkG~G~~lL~~ii~~~~pt~vv~l~~~~~~~~~~l~~~~~~~~~~~~v~vv~l~~s~g~~~~~~~~~~~~R~~~i~~Y 80 (195)
T PF06807_consen 1 GWVKGLGLELLSHIIRAFEPTHVVVLSGSPERLYPDLKRDLPNKKSGWTVNVVKLPKSGGVVERSKLFARDLRELRIRSY 80 (195)
T ss_dssp --------HHHHHHHHHTT--EEEEE--SS-CHHHHHHHHHHHHH---GGGEEEE---TT-----HHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCEEEEECCCchhhhhhhhHhhhcccccceEEEEEecCCCCCcccCHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999 66 67888777665322 227799999999999999999999999999999
Q ss_pred hcCCCC-CCCceeEEeecCceEEEEEcCCCCCCCcCccCCCCCCCCCceEEecCCChhccccEEEEEe-cCChhhhhccC
Q 013511 322 FYGLTN-DLSPHANVANFSDFLVYRIGGGPQAPRSALPIGADPVANPLRIVPVNVDQELLHLVLAVSY-AKDADQIISSN 399 (441)
Q Consensus 322 f~g~~~-~l~p~~~~~~~~~l~~~~~~~~~~~p~s~lp~g~~~~~~~~~~~~v~~s~~l~~~ilav~~-~~~~~~~~~~~ 399 (441)
|++... .|+|+...++|+++++|++ ..+.++||.+.... +.+.+....|.|+|+||++ +.+.+++..++
T Consensus 81 F~~~~~~~l~p~~~~~~l~~~~p~~v----~~~~~~l~~~~~~~-----~~~~~i~~~L~~sival~~~~~~~~~~~~~~ 151 (195)
T PF06807_consen 81 FYGCQRNPLSPHSFTVPLSDLTPYRV----PFPDSALPIGMHSD-----VPPSHILAALNGSIVALCSPASSPEDPLDSN 151 (195)
T ss_dssp HH--TTT-B--EEEEEECCC-EEEEE----CCCCT---T---S------EEE---HHHHTTEEEEEESS-TT--HHTTS-
T ss_pred HhhccccCCCCcccccchhHCcEEEe----eccccccccccccc-----cCHHHHHHHhhhcEEEEEecccCCCCcccCe
Confidence 999765 8999999999999999998 56889999865432 2333346789999999999 77788899999
Q ss_pred ceEEEEEEEeecCCCeEEEEccCCCC-C-CCceEEeeccccccC
Q 013511 400 VAGFIFVTNVDTQRKTITYLAPSPGM-L-PSKYLIAGTLTWLET 441 (441)
Q Consensus 400 v~Gf~~V~~Vd~~~~~~~il~P~~~~-l-p~~~li~g~~~~~~~ 441 (441)
|+||++|++||+++++++||+|.|++ | |.++|++|+++|+++
T Consensus 152 ~~G~~~Vr~VD~~~~~l~iLtP~p~~~L~~~~~Lv~g~i~~p~~ 195 (195)
T PF06807_consen 152 CLGFGIVRSVDEEKRKLYILTPVPGERLEPVNVLVLGSIELPDC 195 (195)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSSS------SEEEEEE------
T ss_pred eEEEEEEEEEECCCCEEEEEcCCChhhcCCCCEEEEcCCcccCC
Confidence 99999999999999999999999998 9 999999999999985
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.95 E-value=5.6e-30 Score=241.41 Aligned_cols=198 Identities=16% Similarity=0.147 Sum_probs=154.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+++++|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|+.
T Consensus 2 ~L~~~~ls~~y~~~--~il~~--ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~------------l~p~~G~V~l~g~~ 65 (258)
T COG1120 2 MLEVENLSFGYGGK--PILDD--LSFSIPKGEITGILGPNGSGKSTLLKCLAGL------------LKPKSGEVLLDGKD 65 (258)
T ss_pred eeEEEEEEEEECCe--eEEec--ceEEecCCcEEEEECCCCCCHHHHHHHHhcc------------CCCCCCEEEECCCc
Confidence 56778999999865 56665 9999999999999999999999999999999 99999999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------------------HHHHHHHHHHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------------------LVKELAQMLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------------------~~~~l~~~~~~~ls~g~ 234 (441)
+.....+.+....++..| .......+||.|-+.+++. .+.+++++....|||||
T Consensus 66 i~~~~~kelAk~ia~vpQ--~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGe 143 (258)
T COG1120 66 IASLSPKELAKKLAYVPQ--SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGE 143 (258)
T ss_pred hhhcCHHHHhhhEEEecc--CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhH
Confidence 655443333333333322 2233444566665554321 13445667777899999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+.+ +++|| |++||...+..+++++++++.+ +||++.|| ++.+.++||++.++ ++|
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHD-----lN~A~ryad~~i~l---k~G 215 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHD-----LNLAARYADHLILL---KDG 215 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---ECC
Confidence 988765 99999 9999999999999999999733 89999999 99999999999999 999
Q ss_pred CeeeCChHHHHHHHHHHHHHHhc
Q 013511 301 GVVSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 301 ~vv~~~~~~~~~~r~~~~~~yf~ 323 (441)
.++..+.+.. ....+.+++.|.
T Consensus 216 ~i~a~G~p~e-vlT~e~l~~Vyg 237 (258)
T COG1120 216 KIVAQGTPEE-VLTEENLREVYG 237 (258)
T ss_pred eEEeecCcch-hcCHHHHHHHhC
Confidence 9998887532 356677788774
No 15
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.95 E-value=1.5e-28 Score=217.13 Aligned_cols=184 Identities=21% Similarity=0.244 Sum_probs=147.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|++|+|.+. ..++++ +||++.+||++.|+||+|||||||+|+|.+. ..|+.|+|.++|++
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~--vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~------------e~pt~G~i~~~~~d 65 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRD--VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE------------ERPTRGKILVNGHD 65 (223)
T ss_pred CeeehhhhhhcCCC-chhhhC--ceEeecCceEEEEECCCCCCHHHHHHHHHhh------------hcCCCceEEECCee
Confidence 67899999999887 468876 9999999999999999999999999999999 99999999999998
Q ss_pred eeeeccCcCCC-CCCCCcccceEEEecccCccCCHHHHHHHH--------------------HHHHHHHHHHhccCccce
Q 013511 179 AATPIELPIDP-VEGIPLEMPLVYFFGHATPSNNVELYKVLV--------------------KELAQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------------------~~l~~~~~~~ls~g~~~r 237 (441)
......+.++. ++.++..+|+..+..+.|+.||++|.+... ..-+..++..||+|++||
T Consensus 66 l~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQR 145 (223)
T COG2884 66 LSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQR 145 (223)
T ss_pred cccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHH
Confidence 86655544331 233444555668899999999999976531 112345567799999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+++ ||.|| |+.|||.....+++++++++. ++|++.||| ..-..+...++..+ ..|.++.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-----~~lv~~~~~rvl~l---~~Grl~~ 217 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-----LELVNRMRHRVLAL---EDGRLVR 217 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-----HHHHHhccCcEEEE---eCCEEEe
Confidence 987 99999 999999999999999999985 499999999 43333345676666 7777764
Q ss_pred C
Q 013511 305 R 305 (441)
Q Consensus 305 ~ 305 (441)
.
T Consensus 218 d 218 (223)
T COG2884 218 D 218 (223)
T ss_pred c
Confidence 3
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.1e-28 Score=226.86 Aligned_cols=189 Identities=18% Similarity=0.208 Sum_probs=150.9
Q ss_pred CCchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 97 TPMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
++|++++|+++.|+... ..++++ +||++.+||+++|+|++|||||||+|+|+|+ ..|++|+|.+
T Consensus 1 ~~~l~v~nl~~~y~~~~~~~~~l~~--VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl------------~~p~~G~I~~ 66 (252)
T COG1124 1 MTLLSVRNLSIVYGGGKFAFHALNN--VSLEIERGETLGIVGESGSGKSTLARLLAGL------------EKPSSGSILL 66 (252)
T ss_pred CceEEEeceEEEecCCcchhhhhcc--eeEEecCCCEEEEEcCCCCCHHHHHHHHhcc------------cCCCCceEEE
Confidence 35788899999997763 126655 9999999999999999999999999999999 9999999999
Q ss_pred Cceeeeeecc-CcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------H----------HHHHHHHHHHhccCc
Q 013511 175 PGCIAATPIE-LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------V----------KELAQMLERQFNGNA 234 (441)
Q Consensus 175 ~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~----------~~l~~~~~~~ls~g~ 234 (441)
+|........ .......++.||.|...+-+..|+.+-+.-.... + ..+.++++.+|||||
T Consensus 67 ~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ 146 (252)
T COG1124 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQ 146 (252)
T ss_pred CCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhH
Confidence 9965432211 1223445688888877777777776644322221 1 234567778899999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+++ ||+|| ++.||...+..+++++.+++.+ +.++++|| +.-+...|||+.|| ++|
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHd-----l~~v~~~cdRi~Vm---~~G 218 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHD-----LALVEHMCDRIAVM---DNG 218 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCc-----HHHHHHHhhheeee---eCC
Confidence 999887 99999 9999999999999999888754 89999999 88888889999999 999
Q ss_pred CeeeCCh
Q 013511 301 GVVSRNS 307 (441)
Q Consensus 301 ~vv~~~~ 307 (441)
.+++..+
T Consensus 219 ~ivE~~~ 225 (252)
T COG1124 219 QIVEIGP 225 (252)
T ss_pred eEEEeec
Confidence 9998765
No 17
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=7.3e-29 Score=220.61 Aligned_cols=204 Identities=15% Similarity=0.191 Sum_probs=167.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++...|++|+|+++. +.+ ++||++++||+|+++|||||||||.+.++.|+ ..|++|.|.++|
T Consensus 2 ~~~L~a~~l~K~y~kr~--Vv~--~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl------------v~~d~G~i~ld~ 65 (243)
T COG1137 2 MSTLVAENLAKSYKKRK--VVN--DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL------------VRPDSGKILLDD 65 (243)
T ss_pred CcEEEehhhhHhhCCee--eee--eeeEEEcCCcEEEEECCCCCCceeEEEEEEEE------------EecCCceEEECC
Confidence 34677899999999874 554 49999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHH-------------HH---------HHHHHHHhccCc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVK-------------EL---------AQMLERQFNGNA 234 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~-------------~l---------~~~~~~~ls~g~ 234 (441)
.++....- ..+.+.|++|.+|....|..+|+++|+........ .| .+.....||||+
T Consensus 66 ~diT~lPm-~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGE 144 (243)
T COG1137 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGE 144 (243)
T ss_pred cccccCCh-HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccch
Confidence 87643221 12355788888888899999999999987543311 11 222334599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
++|+.+ +++|| ++++||.....+.++++.++.. -|++++|+ ..+.+.+|||.+++ ..|.
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHN-----VREtL~i~dRaYIi---~~G~ 216 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHN-----VRETLDICDRAYII---SDGK 216 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEcccc-----HHHHHhhhheEEEE---ecCe
Confidence 988765 99999 9999999999999999999865 88889999 88888999999999 8999
Q ss_pred eeeCChHHHHHHHHHHHHHHhcCCC
Q 013511 302 VVSRNSKVRQKARSYRIREYFYGLT 326 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf~g~~ 326 (441)
+...+++.. ...+...+++|.|..
T Consensus 217 vla~G~p~e-i~~n~~Vr~~YLG~~ 240 (243)
T COG1137 217 VLAEGSPEE-IVNNEDVRRVYLGEN 240 (243)
T ss_pred EEecCCHHH-HhcChhhhhhccccc
Confidence 999887554 356778899998854
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.2e-28 Score=224.97 Aligned_cols=197 Identities=18% Similarity=0.225 Sum_probs=156.0
Q ss_pred CchhHHHHHHHH-hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVL-EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~-~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.|++++|+++.| ++. .++++ ++|++++||+|+|+|++|||||||+|+|.|+ .||++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~~~--~aL~~--Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl------------~d~t~G~i~~~g 65 (258)
T COG3638 2 MMIEVKNLSKTYPGGH--QALKD--VNLEINQGEMVAIIGPSGAGKSTLLRSLNGL------------VDPTSGEILFNG 65 (258)
T ss_pred ceEEEeeeeeecCCCc--eeeee--EeEEeCCCcEEEEECCCCCcHHHHHHHHhcc------------cCCCcceEEecc
Confidence 578899999999 554 57766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcC---CCCCCCCcccceEEEecccCccCCHHHHHHH----------------------------HHHHHHH
Q 013511 177 CIAATPIELPI---DPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------------------------VKELAQM 225 (441)
Q Consensus 177 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------------------------~~~l~~~ 225 (441)
..+.....+.+ +.+.|+.|| ...+.+.+++.+|+..++.. +.+.+-.
T Consensus 66 ~~i~~~~~k~lr~~r~~iGmIfQ--~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q 143 (258)
T COG3638 66 VQITKLKGKELRKLRRDIGMIFQ--QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143 (258)
T ss_pred cchhccchHHHHHHHHhceeEec--cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Confidence 76654443322 233455544 44789999999999876321 1122334
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCe
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
....|||||+||+++ ++.|| .+.|||...+.+++++++++.. |||+.-|+ ++-+.++|+|+
T Consensus 144 ra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-----vdlA~~Y~~Ri 218 (258)
T COG3638 144 RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYADRI 218 (258)
T ss_pred HhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-----HHHHHHHHhhh
Confidence 456799999999887 88999 8999999999999999998743 88888899 88788899998
Q ss_pred EEEEecCCCCeeeCChHHHHHHHHHHHHHHh
Q 013511 292 DVVKLQKSGGVVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf 322 (441)
.-+ +.|+++..++... ..++.+.+.|
T Consensus 219 igl---~~G~ivfDg~~~e--l~~~~~~~iY 244 (258)
T COG3638 219 IGL---KAGRIVFDGPASE--LTDEALDEIY 244 (258)
T ss_pred eEe---cCCcEEEeCChhh--hhHHHHHHHh
Confidence 888 9999999887543 4455555544
No 19
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=213.61 Aligned_cols=343 Identities=23% Similarity=0.301 Sum_probs=231.0
Q ss_pred eeEEEEEEeeeEEEeceecCCCCeEEeCCCCeEEEEeeeCcEEEEeeccceeeeeCCCCchhHHHHHHHHhhhhhhhccC
Q 013511 40 MPLRLRLLNGNAEIYGTELPPEIWLTFPPRLKFAVFTWYEATIEMDGTPETDYTADETPMVSYVNVNAVLEGRRNHAKAS 119 (441)
Q Consensus 40 ~~~~i~l~~G~aeifG~eL~~~~~~~~~~~~~~~i~t~~g~~l~i~g~~~~~y~~~~~~ml~~~nl~~~~~~~~~~~l~~ 119 (441)
++.++.+..|.+++.|-....|..|+....+.+..- .++.+.. -. -.++++.-..+.
T Consensus 9 ~~~~~~v~~g~vri~~~~~~~~~~~~~~~~r~~~~~-------~ve~P~d---~~-----~~~e~i~~~~~~-------- 65 (398)
T COG1341 9 GPGALLVAPGAVRILGLREVEGGALSVARVRTTYHQ-------LVEVPED---RS-----EPLEEIADTWES-------- 65 (398)
T ss_pred CccceEeeCCeEEEeeeeEecCCcceeeeecceecc-------cccCchH---hh-----hHHHHHhhcccc--------
Confidence 899999999999999999999998877555443321 1111100 00 001122111111
Q ss_pred CCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccce
Q 013511 120 PSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPL 199 (441)
Q Consensus 120 ~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~ 199 (441)
.+.....-.+++|+||.+||||||.++|+|.++.+|+++.++|+|++|.+|.+||+++......+......+ .+..
T Consensus 66 --~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l--~~~~ 141 (398)
T COG1341 66 --KSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSEL--EPFT 141 (398)
T ss_pred --cchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHc--Cccc
Confidence 223345667999999999999999999999999999999999999999999999999988776654432222 3445
Q ss_pred EEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCCCCCCc-hhHHHHHHHHHHcCCCEEEEeCCchhh
Q 013511 200 VYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEG-VGYELLLHAIDTFKANVVLVLGQEKLF 278 (441)
Q Consensus 200 ~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~~~lD~-~~~~~l~~li~~~~~~~Vivi~h~~l~ 278 (441)
.+|+|..||..+...+...+.+|.+...+. ..++|+||+||+.+ .+.+.+.++++..+++.|+.++.+.+.
T Consensus 142 ~~FvG~isP~~~~~~~i~~v~rL~~~a~~~--------~~~ilIdT~GWi~G~~g~elk~~li~~ikP~~Ii~l~~~~~~ 213 (398)
T COG1341 142 LYFVGSISPQGFPGRYIAGVARLVDLAKKE--------ADFILIDTDGWIKGWGGLELKRALIDAIKPDLIIALERANEL 213 (398)
T ss_pred eEEEeccCCCCChHHHHHHHHHHHHHhhcc--------CCEEEEcCCCceeCchHHHHHHHHHhhcCCCEEEEecccccc
Confidence 689999999999999988888887765542 45789999999998 889999999999999999999888666
Q ss_pred HHHHHHhcCCCCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcCCCCCCCceeEEeecCceEEEEEc--CCCCCC---
Q 013511 279 SMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGLTNDLSPHANVANFSDFLVYRIG--GGPQAP--- 353 (441)
Q Consensus 279 ~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g~~~~l~p~~~~~~~~~l~~~~~~--~~~~~p--- 353 (441)
..+.+.. .+.+ .++. ......+++++|+..|.+.+++||++.. ..+++++++.+.-.- .+...+
T Consensus 214 ~~l~~~~--~~~~-~~~~--~~~~~~~sR~ER~~~R~e~~~ryf~~~~------~~~v~~~~~~i~g~~if~~~~i~~~~ 282 (398)
T COG1341 214 SPLLEGV--ESIV-YLKV--PDAVAPRSREERKELREEKYRRYFEGSK------IRTVDLDDVRIQGTPIFQGEPIDDEE 282 (398)
T ss_pred chhhhcc--cCce-EEec--cccccccChhHHHHHHHHHHHHhccCCc------eEEecchhceeecccccCCCccchhH
Confidence 6554432 1222 2333 3345677889999999999999999842 223333333222110 011100
Q ss_pred -------------------CcCccCCCCCC-----CCCceEEecCCChhccccEEEEEecCChhhhhccCceEEEEEEEe
Q 013511 354 -------------------RSALPIGADPV-----ANPLRIVPVNVDQELLHLVLAVSYAKDADQIISSNVAGFIFVTNV 409 (441)
Q Consensus 354 -------------------~s~lp~g~~~~-----~~~~~~~~v~~s~~l~~~ilav~~~~~~~~~~~~~v~Gf~~V~~V 409 (441)
+...-+..+.. .+.-.+ .+-++..+.|-++++...+ +.++|.++|+.|
T Consensus 283 ~~~l~~~i~~~~l~~~~~~~~~~~V~~d~~~~~r~~~~~~~-~~v~~~~l~gll~gl~d~~-------~~~iGlGvl~~I 354 (398)
T COG1341 283 EKLLEKLIKKGILHAEKCGGRPYVVKSDLEEGPRLVSGNDV-RVVPSEELKGLLVGLIDND-------GFCIGLGVLRRI 354 (398)
T ss_pred HHhhhhhhhhccccceecCCceEEEeecccccceeecCCcE-EEEChhHhccceEEEecCC-------CcEEEEEEEEEe
Confidence 00000000000 000011 1112345666777776553 467999999999
Q ss_pred ecCCCeEEEEccCCCCCCC-ceEEeeccc
Q 013511 410 DTQRKTITYLAPSPGMLPS-KYLIAGTLT 437 (441)
Q Consensus 410 d~~~~~~~il~P~~~~lp~-~~li~g~~~ 437 (441)
|..+++++|+||. .+.++ +.+++|.+|
T Consensus 355 d~~~~~~~i~t~~-~~~~~i~~i~~Gr~r 382 (398)
T COG1341 355 DFKENELTIYTRV-DDIGEIREIRLGRIR 382 (398)
T ss_pred eccCceEEEEecc-cccCceEEEEEEEEE
Confidence 9999999999999 34443 557777765
No 20
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=3.3e-28 Score=213.35 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=144.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+.+.++.+.|+...-. +++++..|++|+|+||+|||||||+++++|+ ..|.+|+|.++|.+
T Consensus 1 ~l~L~~V~~~y~~~~~~------fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF------------~~P~~G~i~i~g~d 62 (231)
T COG3840 1 MLALDDVRFSYGHLPMR------FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF------------ETPASGEILINGVD 62 (231)
T ss_pred CccccceEEeeCcceEE------EEEeecCCcEEEEECCCCccHHHHHHHHHhc------------cCCCCceEEEcCee
Confidence 34556666777664311 6778899999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------H---------HHHHHHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------L---------VKELAQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~---------~~~l~~~~~~~ls~g~~~r~ 238 (441)
.... .|. ++-+.+.++...+|.|+|+.+|+.++.. . +..+.++++..|||||+||+
T Consensus 63 ~t~~--~P~--~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRv 138 (231)
T COG3840 63 HTAS--PPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRV 138 (231)
T ss_pred cCcC--Ccc--cCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHH
Confidence 5321 122 2334445666789999999999988632 1 23345677788999999998
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +++|| ++.|||.-+..+++++.++..+ |++++||. .+++.++++++.++ .+|++..
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~-----~~Da~~ia~~~~fl---~~Gri~~ 210 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH-----PEDAARIADRVVFL---DNGRIAA 210 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC-----HHHHHHhhhceEEE---eCCEEEe
Confidence 86 99999 9999999999999999888643 99999999 88888899999999 8999988
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.+..
T Consensus 211 ~g~~ 214 (231)
T COG3840 211 QGST 214 (231)
T ss_pred eccH
Confidence 7753
No 21
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=5.9e-28 Score=220.51 Aligned_cols=200 Identities=19% Similarity=0.182 Sum_probs=160.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+|..|+.. .++++ +||++.+|++++|+|+||+|||||+|+|+|+ .++.+|+|.+.|
T Consensus 1 ~~mL~v~~l~~~YG~~--~~L~g--vsl~v~~Geiv~llG~NGaGKTTlLkti~Gl------------~~~~~G~I~~~G 64 (237)
T COG0410 1 APMLEVENLSAGYGKI--QALRG--VSLEVERGEIVALLGRNGAGKTTLLKTIMGL------------VRPRSGRIIFDG 64 (237)
T ss_pred CCceeEEeEeecccce--eEEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeeEEECC
Confidence 3689999999999985 57766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------HHH-------H---HHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------VKE-------L---AQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------~~~-------l---~~~~~~~ls~g~~~ 236 (441)
.++...... ...+.|+.+.++....|+.+||+||+.+.... +++ | .++....||||++|
T Consensus 65 ~dit~~p~~-~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQ 143 (237)
T COG0410 65 EDITGLPPH-ERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQ 143 (237)
T ss_pred eecCCCCHH-HHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHH
Confidence 887543322 23467888888888999999999999875322 111 1 12222359999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
..++ |++|| +.+|-|.-.+.+.++|++++.+ +|+++.++ ...+++.+|+.+|+ .+|++
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn-----~~~Al~iaDr~yvl---e~Gri 215 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQN-----ARFALEIADRGYVL---ENGRI 215 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEecc-----HHHHHHhhCEEEEE---eCCEE
Confidence 6654 99999 8999999999999999999854 89999998 88888899999999 99999
Q ss_pred eeCChHHHHHHHHHHHHHH
Q 013511 303 VSRNSKVRQKARSYRIREY 321 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~y 321 (441)
+..++......+....+.|
T Consensus 216 v~~G~~~eL~~~~~v~~~y 234 (237)
T COG0410 216 VLSGTAAELLADPDVREAY 234 (237)
T ss_pred EEecCHHHHhcCHHHHHHh
Confidence 9988754433333333334
No 22
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.7e-28 Score=227.82 Aligned_cols=186 Identities=23% Similarity=0.351 Sum_probs=154.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. ..++++ +|+++.+|++++|+|+||||||||+++|+|+ +.|.+|.|.++|.
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~--v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL------------l~p~~G~v~~~g~ 66 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKD--VSLEIEKGERVLLIGPNGSGKSTLLKLLNGL------------LKPTSGEVLVDGL 66 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeee--eEEEECCCCEEEEECCCCCCHHHHHHHHcCc------------CcCCCCEEEECCe
Confidence 456677888888765 457765 9999999999999999999999999999999 9999999999997
Q ss_pred eeee-eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------------HHHHHHHHHHHhccCccc
Q 013511 178 IAAT-PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------------VKELAQMLERQFNGNAES 236 (441)
Q Consensus 178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------------~~~l~~~~~~~ls~g~~~ 236 (441)
.... .....++.+.++.||+|...||.. |+.+.++|+... +.++.++.+..||+||+|
T Consensus 67 ~~~~~~~~~~~~~~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkq 145 (235)
T COG1122 67 DTSSEKSLLELRQKVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQ 145 (235)
T ss_pred eccchhhHHHhhcceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCccee
Confidence 6532 222345667889999998888774 888888886432 112234555679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +|+|| |++||+.+++.+++++++++.+ +||++||+ ++.....+|++.++ +.|.+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd-----~~~~~~~ad~v~vl---~~G~i 217 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHD-----LELVLEYADRVVVL---DDGKI 217 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCc-----HHHHHhhCCEEEEE---ECCEE
Confidence 9887 99999 9999999999999999999755 89999999 88888889999999 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..+.
T Consensus 218 ~~~g~ 222 (235)
T COG1122 218 LADGD 222 (235)
T ss_pred eecCC
Confidence 87775
No 23
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=3.3e-28 Score=225.09 Aligned_cols=180 Identities=20% Similarity=0.248 Sum_probs=137.6
Q ss_pred hhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 100 VSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 100 l~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+++.|+++.|... ...++++ ++|++++||+++|+||+|||||||+++|.++ ..|++|.+.++|+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~--v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l------------d~pt~G~v~i~g~ 67 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKD--VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL------------DKPTSGEVLINGK 67 (226)
T ss_pred cEEeeeEEEeccCCcceEeccc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCceEEECCE
Confidence 4456666666432 2356765 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH----------HHHHHHhccCc
Q 013511 178 IAATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA----------QMLERQFNGNA 234 (441)
Q Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~----------~~~~~~ls~g~ 234 (441)
........... .+..++|.+|..++++++|+.||+.+.... ...+. +..+.+|||||
T Consensus 68 d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGq 147 (226)
T COG1136 68 DLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQ 147 (226)
T ss_pred EcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHH
Confidence 76544332211 223456666667899999999999864321 11111 14467899999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+++ ++.|| |+.||....+.+++++++++.+ +||++|||.. ....|||+..+ ++|
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~------lA~~~dr~i~l---~dG 218 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE------LAKYADRVIEL---KDG 218 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH------HHHhCCEEEEE---eCC
Confidence 999987 99999 9999999999999999999643 9999999932 22468998888 777
Q ss_pred Ce
Q 013511 301 GV 302 (441)
Q Consensus 301 ~v 302 (441)
++
T Consensus 219 ~~ 220 (226)
T COG1136 219 KI 220 (226)
T ss_pred ee
Confidence 63
No 24
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=4.2e-28 Score=229.29 Aligned_cols=187 Identities=16% Similarity=0.275 Sum_probs=149.8
Q ss_pred CCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCC--CCCCCCccc
Q 013511 120 PSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPID--PVEGIPLEM 197 (441)
Q Consensus 120 ~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~--~~~~~~~~~ 197 (441)
+++||++.+||+..|+|=+|||||||+|+|.++ .+|+.|+|.++|.+++......++ .+..+.+.+
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL------------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL------------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhcc------------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 458999999999999999999999999999999 999999999999987665443322 122344445
Q ss_pred ceEEEecccCccCCHHHHHHH--------------------HHHHHHHHHHHhccCccceeee----------EEEeC-C
Q 013511 198 PLVYFFGHATPSNNVELYKVL--------------------VKELAQMLERQFNGNAESRAAG----------MVINT-M 246 (441)
Q Consensus 198 ~~~~~~g~~tv~en~~~~~~~--------------------~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~ 246 (441)
|...+++|.|+.+|..|++.. +..+.+.++.+||||++||+.+ |++|| +
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 556899999999999987532 2345678888999999999875 99999 9
Q ss_pred CCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHHH--HHHHHHHHHHH
Q 013511 247 GWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVR--QKARSYRIREY 321 (441)
Q Consensus 247 ~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~--~~~r~~~~~~y 321 (441)
+.|||.-+..+.+-+.+++. .|||++||| |++++++.+|+.+| ++|.++..+.++. ..+.+..+++|
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD-----LdEAlriG~rIaim---kdG~ivQ~Gtp~eIl~~PAndYV~~F 264 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHD-----LDEALRIGDRIAIM---KDGEIVQVGTPEEILLNPANDYVRDF 264 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecC-----HHHHHhccceEEEe---cCCeEEEeCCHHHHHcCccHHHHHHH
Confidence 99999776666555555542 489999999 99999999999999 9999999987443 44556677788
Q ss_pred hcCCC
Q 013511 322 FYGLT 326 (441)
Q Consensus 322 f~g~~ 326 (441)
+.+.+
T Consensus 265 v~~v~ 269 (386)
T COG4175 265 VRNVD 269 (386)
T ss_pred HhcCC
Confidence 77754
No 25
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=5.5e-28 Score=222.37 Aligned_cols=201 Identities=17% Similarity=0.226 Sum_probs=160.1
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++++.+++++|++. .|+++ +||++.+|++++||||||||||||+++|+|. +.|++|+|.+.|
T Consensus 2 ~~lL~v~~l~k~FGGl--~Al~~--Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~------------~~P~~G~v~~~G 65 (250)
T COG0411 2 TPLLEVRGLSKRFGGL--TAVND--VSLEVRPGEIVGLIGPNGAGKTTLFNLITGF------------YKPSSGTVIFRG 65 (250)
T ss_pred CceeeeccceeecCCE--EEEec--eeEEEcCCeEEEEECCCCCCceeeeeeeccc------------ccCCCceEEECC
Confidence 4678899999999997 57765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH--------------------------------HHHHH
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV--------------------------------KELAQ 224 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------------------------------~~l~~ 224 (441)
..+...... ...+.|+.-.+|....|+++|+.||+....... .+.++
T Consensus 66 ~~it~l~p~-~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~ 144 (250)
T COG0411 66 RDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD 144 (250)
T ss_pred cccCCCCHH-HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc
Confidence 866433221 123456766777778999999999998753210 11233
Q ss_pred HHHHHhccCccceee----------eEEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCC
Q 013511 225 MLERQFNGNAESRAA----------GMVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~----------~lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
.....|+.|++++.. +|++|| .+++.+...+.+.++|++++.+ +|+++.|+ |.-+.++||+
T Consensus 145 ~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-----M~~Vm~l~dr 219 (250)
T COG0411 145 RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-----MKLVMGLADR 219 (250)
T ss_pred chhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-----cHHHhhhccE
Confidence 444568888886654 499999 8999999999999999999853 89999999 9999999999
Q ss_pred eEEEEecCCCCeeeCChHHHHHHHHHHHHHHh
Q 013511 291 VDVVKLQKSGGVVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf 322 (441)
+.|+ ..|.++..+++..-.....-++.|.
T Consensus 220 i~Vl---~~G~~IAeG~P~eV~~dp~VieAYL 248 (250)
T COG0411 220 IVVL---NYGEVIAEGTPEEVRNNPRVIEAYL 248 (250)
T ss_pred EEec---cCCcCcccCCHHHHhcCHHhHHHhc
Confidence 9999 9999999887665433333444443
No 26
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.3e-27 Score=239.61 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=147.5
Q ss_pred CchhHHHHHHHH-hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVL-EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~-~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+|++++|+++.| ++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ..|++|+|.++|
T Consensus 2 ~~l~i~~l~~~~~~~~--~~l~~--vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl------------~~p~~G~I~~~g 65 (356)
T PRK11650 2 AGLKLQAVRKSYDGKT--QVIKG--IDLDVADGEFIVLVGPSGCGKSTLLRMVAGL------------ERITSGEIWIGG 65 (356)
T ss_pred CEEEEEeEEEEeCCCC--EEEee--eeEEEcCCCEEEEECCCCCcHHHHHHHHHCC------------CCCCceEEEECC
Confidence 357788888888 543 46665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------------HHHHHHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------------VKELAQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------------~~~l~~~~~~~ls~g~~~ 236 (441)
....... + .+..+.+.++...+|+++|+.+|+.+..+. +..+.++....||+||+|
T Consensus 66 ~~i~~~~--~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~Q 141 (356)
T PRK11650 66 RVVNELE--P--ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQ 141 (356)
T ss_pred EECCCCC--H--HHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHH
Confidence 7553211 1 123455555666899999999999876431 112334556779999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +|+|| +++||...++.+.+.++++.. .++|++||+ +.++.+.||++.++ ++|++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-----~~ea~~l~D~i~vl---~~G~i 213 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD-----QVEAMTLADRVVVM---NGGVA 213 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCEE
Confidence 9876 99999 999999999999998888743 389999999 88888899999999 89999
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
++.++..
T Consensus 214 ~~~g~~~ 220 (356)
T PRK11650 214 EQIGTPV 220 (356)
T ss_pred EEECCHH
Confidence 8877643
No 27
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=1.7e-27 Score=232.64 Aligned_cols=182 Identities=16% Similarity=0.242 Sum_probs=147.9
Q ss_pred chhHHHHHHHHh-hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLE-GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~-~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++++.|+++.|+ +. .++++ +||++++|++++++||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 4 ~i~~~~l~k~~~~~~--~~l~~--vs~~i~~Gei~gllG~NGAGKTTllk~l~gl------------~~p~~G~i~i~G~ 67 (293)
T COG1131 4 VIEVRNLTKKYGGDK--TALDG--VSFEVEPGEIFGLLGPNGAGKTTLLKILAGL------------LKPTSGEILVLGY 67 (293)
T ss_pred eeeecceEEEeCCCC--EEEec--eeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEEcCE
Confidence 456789999999 45 57765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHH-----------HHH---------HHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVK-----------ELA---------QMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~-----------~l~---------~~~~~~ls~g~~~r 237 (441)
..... ....+..+++.++...+++++|++||+.++..+.. ++. +.....+|+|++||
T Consensus 68 ~~~~~---~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqr 144 (293)
T COG1131 68 DVVKE---PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQR 144 (293)
T ss_pred eCccC---HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHH
Confidence 54221 11222334555555579999999999998765421 111 23346699999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| +++||+.++..++++|++++.+ +|+++||. +.++...||++.++ ++|.++
T Consensus 145 l~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~-----l~e~~~~~d~v~il---~~G~~~ 216 (293)
T COG1131 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI-----LEEAEELCDRVIIL---NDGKII 216 (293)
T ss_pred HHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCc-----HHHHHHhCCEEEEE---eCCEEE
Confidence 775 99999 9999999999999999999753 89999999 88888889999999 999999
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 217 ~~g~ 220 (293)
T COG1131 217 AEGT 220 (293)
T ss_pred EeCC
Confidence 8874
No 28
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=6.7e-28 Score=239.92 Aligned_cols=188 Identities=18% Similarity=0.215 Sum_probs=147.0
Q ss_pred chhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|+++.|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~--vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl------------~~p~~G~I~i~G 66 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNN--VSLHVPAGQIYGVIGASGAGKSTLIRCVNLL------------ERPTSGSVIVDG 66 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECC
Confidence 56778888888531 1247766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCcc
Q 013511 177 CIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAE 235 (441)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~ 235 (441)
..........+ ..+..+.+.++...++++.|+.+|+.+.... +. ++.+.+...||+||+
T Consensus 67 ~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqk 146 (343)
T TIGR02314 67 QDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQK 146 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 86533211111 1122344445555788889999999875421 11 123455678999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| +++||+...+.+++++++++. -+||++||+ ++.+.+.||++.++ +.|.
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-----~~~v~~~~d~v~vl---~~G~ 218 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-----MDVVKRICDCVAVI---SNGE 218 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 99876 99999 999999999999999999854 389999999 88888889999999 8999
Q ss_pred eeeCChH
Q 013511 302 VVSRNSK 308 (441)
Q Consensus 302 vv~~~~~ 308 (441)
+++.++.
T Consensus 219 iv~~g~~ 225 (343)
T TIGR02314 219 LIEQGTV 225 (343)
T ss_pred EEEEcCH
Confidence 9987763
No 29
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=1.2e-27 Score=239.30 Aligned_cols=186 Identities=17% Similarity=0.212 Sum_probs=150.3
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
+++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ .+|++|+|.++
T Consensus 3 ~~~~l~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~~~ 66 (351)
T PRK11432 3 QKNFVVLKNITKRFGSN--TVIDN--LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL------------EKPTEGQIFID 66 (351)
T ss_pred CCcEEEEEeEEEEECCe--EEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHHCC------------CCCCceEEEEC
Confidence 45678889999999764 46765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------H---------HHHHHHHHHHhccCcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------V---------KELAQMLERQFNGNAE 235 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~---------~~l~~~~~~~ls~g~~ 235 (441)
|..+... + ..+..+.+.++...+|+++|+.+|+.+.... + ..+.++....||+||+
T Consensus 67 g~~i~~~---~-~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~ 142 (351)
T PRK11432 67 GEDVTHR---S-IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQ 142 (351)
T ss_pred CEECCCC---C-HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 9755321 1 1223455555556789999999999986431 1 1223455678999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +++|| +++||...++.+.+.++++.. .++|++||+ ..++.+++|++.++ +.|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-----~~e~~~laD~i~vm---~~G~ 214 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD-----QSEAFAVSDTVIVM---NKGK 214 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCE
Confidence 99876 99999 999999999999999988743 389999999 88888899999999 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
++..++..
T Consensus 215 i~~~g~~~ 222 (351)
T PRK11432 215 IMQIGSPQ 222 (351)
T ss_pred EEEEcCHH
Confidence 98877643
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.93 E-value=2.8e-27 Score=233.01 Aligned_cols=185 Identities=15% Similarity=0.208 Sum_probs=147.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 5 ~~~i~i~~l~k~~~~~--~~l~~--vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl------------~~p~~G~v~i~G 68 (306)
T PRK13537 5 VAPIDFRNVEKRYGDK--LVVDG--LSFHVQRGECFGLLGPNGAGKTTTLRMLLGL------------THPDAGSISLCG 68 (306)
T ss_pred CceEEEEeEEEEECCe--EEEec--ceEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECC
Confidence 3578889999999764 47766 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~ 236 (441)
....... ...+..+++.++...+|+.+|+.+|+.++... +.++ .+.....||+|++|
T Consensus 69 ~~~~~~~---~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 145 (306)
T PRK13537 69 EPVPSRA---RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKR 145 (306)
T ss_pred Eecccch---HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHH
Confidence 7543211 11123344555555788889999999875432 1111 12334569999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+++ +|+|| +++||+.++..+.++|++++. .+|++++|+ +.++.+.||++.++ ++|+++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~-----l~e~~~~~d~i~il---~~G~i~ 217 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHF-----MEEAERLCDRLCVI---EEGRKI 217 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 8775 99999 999999999999999999854 399999999 88888899999999 899998
Q ss_pred eCChH
Q 013511 304 SRNSK 308 (441)
Q Consensus 304 ~~~~~ 308 (441)
..++.
T Consensus 218 ~~g~~ 222 (306)
T PRK13537 218 AEGAP 222 (306)
T ss_pred EECCH
Confidence 87753
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.93 E-value=2.3e-27 Score=237.44 Aligned_cols=184 Identities=17% Similarity=0.212 Sum_probs=148.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ .+|++|+|.++|
T Consensus 2 ~~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl------------~~p~~G~I~i~g 65 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAF--TALKD--ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL------------ERQTAGTIYQGG 65 (353)
T ss_pred CcEEEEEEEEEEeCCe--EEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHCC------------CCCCceEEEECC
Confidence 3567888999999764 35665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~ 236 (441)
...... .+ .++.+.+.++...+|+++|+.+|+.+.... +. .+.++....||+||+|
T Consensus 66 ~~~~~~--~~--~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~Q 141 (353)
T TIGR03265 66 RDITRL--PP--QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQ 141 (353)
T ss_pred EECCCC--CH--HHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHH
Confidence 755321 11 123455555666899999999999886431 11 1234556779999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +++|| +++||...++.+.+.++++.. .++|++||+ +.++...+|++.++ ++|++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd-----~~ea~~l~d~i~vl---~~G~i 213 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD-----QEEALSMADRIVVM---NHGVI 213 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 9876 99999 999999999999999988743 389999999 88888899999999 89999
Q ss_pred eeCChH
Q 013511 303 VSRNSK 308 (441)
Q Consensus 303 v~~~~~ 308 (441)
+..++.
T Consensus 214 ~~~g~~ 219 (353)
T TIGR03265 214 EQVGTP 219 (353)
T ss_pred EEEcCH
Confidence 887764
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=4.3e-27 Score=236.87 Aligned_cols=186 Identities=17% Similarity=0.287 Sum_probs=149.7
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
...+++++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|++|+|.+
T Consensus 10 ~~~~~L~l~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl------------~~p~~G~I~~ 73 (375)
T PRK09452 10 SLSPLVELRGISKSFDGK--EVISN--LDLTINNGEFLTLLGPSGCGKTTVLRLIAGF------------ETPDSGRIML 73 (375)
T ss_pred cCCceEEEEEEEEEECCe--EEEee--eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEE
Confidence 445678899999999764 35655 9999999999999999999999999999999 9999999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCc
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNA 234 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~ 234 (441)
+|...... + ..+..+.+.++...+|+++|+.+|+.+.... +. .+.++....||+||
T Consensus 74 ~g~~i~~~---~-~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq 149 (375)
T PRK09452 74 DGQDITHV---P-AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ 149 (375)
T ss_pred CCEECCCC---C-HHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 99754221 1 1123455555556799999999999876421 11 22345567799999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+||+++ +|+|| +++||...++.+.+.|+++.. .++|++||+ ..++...+|++.++ ++|
T Consensus 150 ~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-----~~ea~~laDri~vl---~~G 221 (375)
T PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-----QEEALTMSDRIVVM---RDG 221 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECC
Confidence 999876 99999 999999999999999988743 389999999 88888889999999 899
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
+++..++.
T Consensus 222 ~i~~~g~~ 229 (375)
T PRK09452 222 RIEQDGTP 229 (375)
T ss_pred EEEEEcCH
Confidence 99887763
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.92 E-value=6.5e-27 Score=233.09 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=147.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 38 ~~~~i~i~nl~k~y~~~--~~l~~--is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl------------~~p~~G~i~i~ 101 (340)
T PRK13536 38 STVAIDLAGVSKSYGDK--AVVNG--LSFTVASGECFGLLGPNGAGKSTIARMILGM------------TSPDAGKITVL 101 (340)
T ss_pred CceeEEEEEEEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCceEEEEC
Confidence 34578999999999865 47765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH---------HHHHHHhccCcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA---------QMLERQFNGNAE 235 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~---------~~~~~~ls~g~~ 235 (441)
|...... .......+.+.++...+++.+|+.+|+.++... ..++. +.....||+|++
T Consensus 102 G~~~~~~---~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~k 178 (340)
T PRK13536 102 GVPVPAR---ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMK 178 (340)
T ss_pred CEECCcc---hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHH
Confidence 9754321 111223455555556788899999999865321 11111 223356999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+.+ +|+|| +++||+.++..+.++|++++. .+||+++|+ +..+.+.||++.++ ++|.+
T Consensus 179 qrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~-----l~e~~~~~d~i~il---~~G~i 250 (340)
T PRK13536 179 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF-----MEEAERLCDRLCVL---EAGRK 250 (340)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 98775 99999 999999999999999999853 399999999 88888899999999 89999
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..++
T Consensus 251 ~~~g~ 255 (340)
T PRK13536 251 IAEGR 255 (340)
T ss_pred EEEcC
Confidence 87775
No 34
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.8e-27 Score=219.46 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=142.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.+.|
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~--i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl------------l~p~~G~i~~~g 65 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLED--ISLSVEKGEITALIGPNGAGKSTLLKAILGL------------LKPSSGEIKIFG 65 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeec--cEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCcceEEEcc
Confidence 4678899999999975 37876 9999999999999999999999999999999 999999999988
Q ss_pred eeeeeeccCcCCCCCCCCcccceE--EEecccCccCCHHHHHH---------------H---------HHHHHHHHHHHh
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLV--YFFGHATPSNNVELYKV---------------L---------VKELAQMLERQF 230 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~tv~en~~~~~~---------------~---------~~~l~~~~~~~l 230 (441)
........ ...++|.+|.. .+-.-.||+|-+.++.. . +.++.++...+|
T Consensus 66 ~~~~~~~~-----~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~L 140 (254)
T COG1121 66 KPVRKRRK-----RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGEL 140 (254)
T ss_pred cccccccc-----CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccccc
Confidence 64321110 11122333321 11112466665554310 1 223445556679
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
||||+||+-+ +++|| +.++|+.++..+.++|++++.+ +|++++|| +....+.+|+|..+
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHD-----L~~v~~~~D~vi~L--- 212 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHD-----LGLVMAYFDRVICL--- 212 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----cHHhHhhCCEEEEE---
Confidence 9999998765 99999 9999999999999999999875 99999999 99888999998888
Q ss_pred CCCCeeeCChHHHHHHHHHHHHHHhc
Q 013511 298 KSGGVVSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 298 ~~g~vv~~~~~~~~~~r~~~~~~yf~ 323 (441)
++.+...++.+.. .+.+.+..-|.
T Consensus 213 -n~~~~~~G~~~~~-~~~~~l~~~~g 236 (254)
T COG1121 213 -NRHLIASGPPEEV-LTEENLEKAFG 236 (254)
T ss_pred -cCeeEeccChhhc-cCHHHHHHHhC
Confidence 4556666654332 23334444443
No 35
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.7e-26 Score=209.15 Aligned_cols=179 Identities=17% Similarity=0.234 Sum_probs=149.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++.+++|+|+++ .|+++ +||++.+|++.+++|+|||||||.+|+|+|+ +.|++|.|+++|..
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~--isf~v~~G~i~GllG~NGAGKTTtfRmILgl------------le~~~G~I~~~g~~ 65 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDN--ISFEVPPGEIFGLLGPNGAGKTTTFRMILGL------------LEPTEGEITWNGGP 65 (300)
T ss_pred ceEEecchhccCce--eeecc--eeeeecCCeEEEeecCCCCCccchHHHHhcc------------CCccCceEEEcCcc
Confidence 57789999999998 57765 9999999999999999999999999999999 99999999999964
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHHH---------HHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELAQ---------MLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~~---------~~~~~ls~g~~~r~ 238 (441)
.... .. ..++|.+....+|+.+|+.|.+.|+..+ +..+.+ .....||.|.+|++
T Consensus 66 ~~~~----~~--~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKI 139 (300)
T COG4152 66 LSQE----IK--NRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKI 139 (300)
T ss_pred hhhh----hh--hhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHH
Confidence 4322 22 2355666677899999999999887654 122222 23356898888875
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
.+ +|+|| +++|||.+.+.+.+.+.+++.. +||+++|. |+.+.++||++.++ +.|..|-.
T Consensus 140 QfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~-----Me~vEeLCD~llmL---~kG~~V~~ 211 (300)
T COG4152 140 QFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHR-----MEHVEELCDRLLML---KKGQTVLY 211 (300)
T ss_pred HHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecch-----HHHHHHHhhhhhee---cCCceEEe
Confidence 43 99999 9999999999999999999865 99999999 99999999999998 88988888
Q ss_pred Ch
Q 013511 306 NS 307 (441)
Q Consensus 306 ~~ 307 (441)
++
T Consensus 212 G~ 213 (300)
T COG4152 212 GT 213 (300)
T ss_pred cc
Confidence 76
No 36
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.9e-26 Score=200.82 Aligned_cols=182 Identities=19% Similarity=0.306 Sum_probs=144.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+.+.+++..|+++...++++ +|+++.+|+.|+++||+|||||||+++++|+ .+|..|.|.++|.
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~--vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf------------~~P~~G~i~l~~r 67 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALED--VSLTIASGELVVVLGPSGCGKTTLLNLIAGF------------VTPSRGSIQLNGR 67 (259)
T ss_pred ceeehhheEEecCCcchhhhhc--cceeecCCCEEEEEcCCCccHHHHHHHHhcC------------cCcccceEEECCE
Confidence 4566778888888876567776 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH-----------HHH---------HHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV-----------KEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~-----------~~l---------~~~~~~~ls~g~~~r 237 (441)
.+..+ ..+++++||.+ .+++++++.||++|+++.. .++ .+++.-+||||++||
T Consensus 68 ~i~gP-----gaergvVFQ~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR 140 (259)
T COG4525 68 RIEGP-----GAERGVVFQNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR 140 (259)
T ss_pred eccCC-----CccceeEeccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH
Confidence 55332 23467887776 6899999999999987641 111 123334599999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+.+ +++|| ++.+|...++.+.+++-++.. ..++++||+ +++++-+++++.|+ -|.+|+++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~-----ieEAlflatrLvvl-sp~pgRvv 214 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHD-----IEEALFLATRLVVL-SPGPGRVV 214 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEecc-----HHHHHhhhheeEEe-cCCCceee
Confidence 876 99999 999998877777766655432 378888999 88888788888776 55678888
Q ss_pred eCC
Q 013511 304 SRN 306 (441)
Q Consensus 304 ~~~ 306 (441)
.+-
T Consensus 215 ~~~ 217 (259)
T COG4525 215 ERL 217 (259)
T ss_pred Eec
Confidence 764
No 37
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.8e-26 Score=232.68 Aligned_cols=185 Identities=19% Similarity=0.285 Sum_probs=146.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|++++|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ .+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~~--~~l~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~i~g 80 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQ--HAVDD--VSLTIYKGEIFALLGASGCGKSTLLRMLAGF------------EQPTAGQIMLDG 80 (377)
T ss_pred CceEEEEeEEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECC
Confidence 4578889999999764 46665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~ 236 (441)
...... .+ .+..+.+.++...+|+++|+.+|+.+.... +. .+.++....||+||+|
T Consensus 81 ~~i~~~--~~--~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~Q 156 (377)
T PRK11607 81 VDLSHV--PP--YQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQ 156 (377)
T ss_pred EECCCC--CH--HHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 754221 11 223444555555789999999999876431 11 1224455679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +++|| +++||...++.+.+.++++. ..++|++||+ ..++..++|++.++ ++|++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-----~~ea~~laDri~vl---~~G~i 228 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-----QEEAMTMAGRIAIM---NRGKF 228 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHhCCEEEEE---eCCEE
Confidence 9876 99999 99999999888877766653 2389999999 88888899999999 89999
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
+..++..
T Consensus 229 ~~~g~~~ 235 (377)
T PRK11607 229 VQIGEPE 235 (377)
T ss_pred EEEcCHH
Confidence 8877643
No 38
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.92 E-value=1.9e-26 Score=232.46 Aligned_cols=182 Identities=19% Similarity=0.265 Sum_probs=143.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 3 ~l~i~~l~~~~~~~--~vl~~--vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl------------~~p~~G~I~~~g~~ 66 (369)
T PRK11000 3 SVTLRNVTKAYGDV--VISKD--INLDIHEGEFVVFVGPSGCGKSTLLRMIAGL------------EDITSGDLFIGEKR 66 (369)
T ss_pred EEEEEEEEEEeCCe--EEEee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECCEE
Confidence 46677888888764 36665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~ 238 (441)
.... .+ ....+.+.++...+|+++|+.+|+.++... +.+ +.++....||+||+||+
T Consensus 67 i~~~--~~--~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRv 142 (369)
T PRK11000 67 MNDV--PP--AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 (369)
T ss_pred CCCC--CH--hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 4211 11 123355555555788999999999875421 111 12334467999999998
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| +++||+..++.+.++|+++.. .++|++||+ +..+...||++.++ ++|.++.
T Consensus 143 aLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd-----~~~~~~~~d~i~vl---~~G~i~~ 214 (369)
T PRK11000 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-----QVEAMTLADKIVVL---DAGRVAQ 214 (369)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 76 99999 999999999999999988742 389999999 77777889999999 8898887
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.++.
T Consensus 215 ~g~~ 218 (369)
T PRK11000 215 VGKP 218 (369)
T ss_pred EcCH
Confidence 7653
No 39
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.92 E-value=1.5e-26 Score=216.72 Aligned_cols=181 Identities=20% Similarity=0.232 Sum_probs=134.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~ 66 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDN--LNFHITKGEMVFLVGHSGAGKSTFLKLILGI------------EKPTRGKIRFNGQD 66 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEe
Confidence 455677777785421236665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 179 AATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
......... .....+.+.++...+++..|+.+|+.+.... +.+ ..+.....||+||+||
T Consensus 67 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 146 (216)
T TIGR00960 67 LTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQR 146 (216)
T ss_pred hhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 422111100 0112344445555678888999998764211 111 1233446799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +......||++.++ ++|.
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~-----~~~~~~~~d~i~~l---~~G~ 215 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD-----INLVETYRHRTLTL---SRGR 215 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCc
Confidence 775 99999 999999999999999998753 389999999 76666678998888 6664
No 40
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.91 E-value=2e-26 Score=230.64 Aligned_cols=181 Identities=17% Similarity=0.255 Sum_probs=144.1
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|...
T Consensus 3 L~i~~l~~~~~~~--~~l~~--isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl------------~~p~~G~I~i~g~~i 66 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLND--ISLDIPSGQMVALLGPSGSGKTTLLRIIAGL------------EHQTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEeCCe--EEEEE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEEC
Confidence 5567777888664 46665 9999999999999999999999999999999 999999999999755
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------HH---------HHHHHHHHHhccCcc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------VK---------ELAQMLERQFNGNAE 235 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------~~---------~l~~~~~~~ls~g~~ 235 (441)
... .+ .+..+.+.++...+|+++|+.+|+.+.... +. .+.++....||+||+
T Consensus 67 ~~~--~~--~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~ 142 (353)
T PRK10851 67 SRL--HA--RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQK 142 (353)
T ss_pred CCC--CH--HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 321 11 123455555556789999999999875321 11 122344567999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| +++||...++.+.+.++++.. .++|++||+ +.++.+.||++.++ +.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd-----~~ea~~~~Dri~vl---~~G~ 214 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHD-----QEEAMEVADRVVVM---SQGN 214 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 99876 99999 999999999999999988753 389999999 88888899999999 8899
Q ss_pred eeeCChH
Q 013511 302 VVSRNSK 308 (441)
Q Consensus 302 vv~~~~~ 308 (441)
+++.++.
T Consensus 215 i~~~g~~ 221 (353)
T PRK10851 215 IEQAGTP 221 (353)
T ss_pred EEEEcCH
Confidence 9887753
No 41
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.91 E-value=1.9e-26 Score=231.30 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=144.2
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC--CcccCCce
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ--GAITIPGC 177 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~--G~i~~~G~ 177 (441)
+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++ |+|.++|.
T Consensus 6 l~~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl------------~~p~~~~G~i~~~g~ 69 (362)
T TIGR03258 6 IRIDHLRVAYGAN--TVLDD--LSLEIEAGELLALIGKSGCGKTTLLRAIAGF------------VKAAGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEECCe--EEEee--eEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCEEEEECCE
Confidence 3456777778654 46765 9999999999999999999999999999999 99999 99999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..... .+ ....+.+.++...+|+++|+.+|+.+.... +.+ +.++....||+||+||
T Consensus 70 ~~~~~--~~--~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QR 145 (362)
T TIGR03258 70 DLTHA--PP--HKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQR 145 (362)
T ss_pred ECCCC--CH--HHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHH
Confidence 54211 11 123345555556789999999999876431 111 2344566799999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC----CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA----NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~----~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+++ +++|| +++||+..++.+.+.|+++.. .++|++||+ +.++...+|++.++ ++|++
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-----~~ea~~l~dri~vl---~~G~i 217 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-----QDDALTLADKAGIM---KDGRL 217 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 876 99999 999999999999998887643 389999999 88888889999999 89999
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
+..++..
T Consensus 218 ~~~g~~~ 224 (362)
T TIGR03258 218 AAHGEPQ 224 (362)
T ss_pred EEEcCHH
Confidence 8887643
No 42
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.9e-26 Score=215.36 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=142.3
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
+++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++
T Consensus 2 ~~~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~ 65 (237)
T PRK11614 2 EKVMLSFDKVSAHYGKI--QALHE--VSLHINQGEIVTLIGANGAGKTTLLGTLCGD------------PRATSGRIVFD 65 (237)
T ss_pred CccEEEEEeEEEeeCCc--eeeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCceEEEC
Confidence 35678889999999754 46665 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHHHH----------HHHHHHHhccCccc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVKEL----------AQMLERQFNGNAES 236 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~~l----------~~~~~~~ls~g~~~ 236 (441)
|.......... .....+.+.++...+|+..|+.+|+.+... .+.++ .+.....||+|++|
T Consensus 66 g~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~q 144 (237)
T PRK11614 66 GKDITDWQTAK-IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQ 144 (237)
T ss_pred CEecCCCCHHH-HHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHH
Confidence 97542211000 012234444554567777899998876321 01111 12233458999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+.+ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|+++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~ 216 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQN-----ANQALKLADRGYVL---ENGHVV 216 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCc-----HHHHHhhCCEEEEE---eCCEEE
Confidence 8765 99999 999999999999999988743 389999999 77777789999999 889888
Q ss_pred eCChH
Q 013511 304 SRNSK 308 (441)
Q Consensus 304 ~~~~~ 308 (441)
..++.
T Consensus 217 ~~~~~ 221 (237)
T PRK11614 217 LEDTG 221 (237)
T ss_pred eeCCH
Confidence 77653
No 43
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=8.7e-26 Score=226.09 Aligned_cols=172 Identities=17% Similarity=0.285 Sum_probs=136.8
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCC--CCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPID--PVEG 192 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~--~~~~ 192 (441)
.++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..+.......+. .+..
T Consensus 7 ~~l~~--vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl------------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~ 72 (363)
T TIGR01186 7 KGVND--ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL------------IEPTAGQIFIDGENIMKQSPVELREVRRKK 72 (363)
T ss_pred eeEEe--eEEEEcCCCEEEEECCCCChHHHHHHHHhCC------------CCCCceEEEECCEECCcCCHHHHHHHHhCc
Confidence 35655 9999999999999999999999999999999 999999999999765432111110 0234
Q ss_pred CCcccceEEEecccCccCCHHHHHHH-----------H---------HHHHHHHHHHhccCccceeee----------EE
Q 013511 193 IPLEMPLVYFFGHATPSNNVELYKVL-----------V---------KELAQMLERQFNGNAESRAAG----------MV 242 (441)
Q Consensus 193 ~~~~~~~~~~~g~~tv~en~~~~~~~-----------~---------~~l~~~~~~~ls~g~~~r~~~----------lI 242 (441)
+.+.++...+|+++|+.+|+.+.... + ..+.++....||+||+||+++ +|
T Consensus 73 i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 55555556789999999999875431 1 112345567799999999876 99
Q ss_pred EeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 243 INT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 243 lDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|| +++||+..++.+.+.+.+++ ..+||++||+ +..+.+.||++.++ ++|.++..+..
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-----~~ea~~~~drI~vl---~~G~iv~~g~~ 214 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-----LDEAIRIGDRIVIM---KAGEIVQVGTP 214 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCEEEeeCCH
Confidence 999 99999999999999998874 2499999999 88888899999999 89999887753
No 44
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3.5e-26 Score=228.61 Aligned_cols=187 Identities=21% Similarity=0.260 Sum_probs=142.6
Q ss_pred chhHHHHHHHHh--hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLE--GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~--~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|++++|+++.|+ +....++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~--vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl------------~~p~~G~I~~~g 66 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNN--VSLHIPAGEIFGVIGASGAGKSTLIRCINLL------------ERPTSGRVLVDG 66 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCceEEEECC
Confidence 466788888886 211246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCcc
Q 013511 177 CIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~ 235 (441)
........... ..+..+.+.++...+|+.+|+.+|+.+.... +.+ +.+.....||+||+
T Consensus 67 ~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 146 (343)
T PRK11153 67 QDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQK 146 (343)
T ss_pred EECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHH
Confidence 75432111111 0122344444545678889999999875321 111 12334467999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| +++||+..++.+.++|++++. .+||+++|+ +....+.||++.++ ++|.
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~-----~~~i~~~~d~v~~l---~~G~ 218 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE-----MDVVKRICDRVAVI---DAGR 218 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 98876 99999 999999999999999998843 389999999 77777789999999 8898
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..++
T Consensus 219 i~~~g~ 224 (343)
T PRK11153 219 LVEQGT 224 (343)
T ss_pred EEEEcC
Confidence 887765
No 45
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.91 E-value=5.9e-26 Score=223.58 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=142.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 3 ~~i~~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 66 (303)
T TIGR01288 3 VAIDLVGVSKSYGDK--VVVND--LSFTIARGECFGLLGPNGAGKSTIARMLLGM------------ISPDRGKITVLGE 66 (303)
T ss_pred cEEEEEeEEEEeCCe--EEEcc--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCE
Confidence 367788899888764 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..... ....+..+.+.++...+++.+|+.+|+.++... +.+ ..+.....||+||+||
T Consensus 67 ~~~~~---~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qr 143 (303)
T TIGR01288 67 PVPSR---ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRR 143 (303)
T ss_pred ECccc---HHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHH
Confidence 54211 111123344445555678889999998754321 111 1123345799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|.++.
T Consensus 144 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~-----~~~~~~~~d~i~~l---~~G~i~~ 215 (303)
T TIGR01288 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHF-----MEEAERLCDRLCVL---ESGRKIA 215 (303)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 775 99999 999999999999999998843 399999999 87777789999999 8888887
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 216 ~g~ 218 (303)
T TIGR01288 216 EGR 218 (303)
T ss_pred EcC
Confidence 665
No 46
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.91 E-value=9e-26 Score=211.81 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=137.3
Q ss_pred chhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|++++|+++.|++.. ..++++ ++|++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~--~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g 66 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDG--VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL------------LEPDAGFATVDG 66 (218)
T ss_pred CeEEEEEEEecCCCCccceeecc--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCCceEEECC
Confidence 355677888886531 136655 9999999999999999999999999999999 899999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------H---------HHHHHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------V---------KELAQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~---------~~l~~~~~~~ls~g~~~ 236 (441)
...... .......+.+.++...+|+..|+.+|+.++... + ....+.....||+||+|
T Consensus 67 ~~~~~~---~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 143 (218)
T cd03266 67 FDVVKE---PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQ 143 (218)
T ss_pred EEcccC---HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHH
Confidence 754321 111122344444445678888999998764321 1 11224455679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+++ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +......+|++.++ ++|.++
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~-----~~~~~~~~d~i~~l---~~G~i~ 215 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHI-----MQEVERLCDRVVVL---HRGRVV 215 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhcCEEEEE---ECCEEe
Confidence 8775 99999 999999999999999998853 399999999 76666778998888 788775
Q ss_pred e
Q 013511 304 S 304 (441)
Q Consensus 304 ~ 304 (441)
.
T Consensus 216 ~ 216 (218)
T cd03266 216 Y 216 (218)
T ss_pred e
Confidence 4
No 47
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.6e-26 Score=217.05 Aligned_cols=182 Identities=19% Similarity=0.262 Sum_probs=136.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~~ 66 (235)
T cd03261 3 LRGLTKSFGGR--TVLKG--VDLDVRRGEILAIIGPSGSGKSTLLRLIVGL------------LRPDSGEVLIDGEDISG 66 (235)
T ss_pred EEEEEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccc
Confidence 45666677643 36655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccC-cCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCccceee
Q 013511 182 PIEL-PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAESRAA 239 (441)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~~r~~ 239 (441)
.... .......+.+.++...+|+.+|+.+|+.+.... +.+ ..+.....||+||+||++
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHH
Confidence 1110 011123344445555678888999998764221 111 112334569999999877
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +......||++.++ ++|.++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~-----~~~~~~~~d~v~~l---~~G~i~~~ 218 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-----LDTAFAIADRIAVL---YDGKIVAE 218 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC-----HHHHHHhcCEEEEE---ECCeEEEe
Confidence 5 99999 999999999999999998742 489999999 77777789999998 78888776
Q ss_pred Ch
Q 013511 306 NS 307 (441)
Q Consensus 306 ~~ 307 (441)
++
T Consensus 219 g~ 220 (235)
T cd03261 219 GT 220 (235)
T ss_pred cC
Confidence 54
No 48
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=6.8e-26 Score=203.49 Aligned_cols=197 Identities=17% Similarity=0.190 Sum_probs=147.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++..|+++...+++ .++ ++|+++.+||+++|+||||||||||+|.|+|+ +.|++|++.++|..
T Consensus 1 mi~a~nls~~~~Gr~--ll~--~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe------------l~p~~G~v~~~g~~ 64 (259)
T COG4559 1 MIRAENLSYSLAGRR--LLD--GVSLDLRPGEVLAILGPNGAGKSTLLKALSGE------------LSPDSGEVTLNGVP 64 (259)
T ss_pred CeeeeeeEEEeecce--ecc--CcceeccCCcEEEEECCCCccHHHHHHHhhCc------------cCCCCCeEeeCCcC
Confidence 566778888888775 454 49999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----------------HH-----HHHHHHHHHHHhccCccc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----------------VL-----VKELAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----------------~~-----~~~l~~~~~~~ls~g~~~ 236 (441)
........+.....+..|... +-...|+.|-+.+++ .. +..++.+....||||++|
T Consensus 65 l~~~~~~~lA~~raVlpQ~s~--laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQ 142 (259)
T COG4559 65 LNSWPPEELARHRAVLPQNSS--LAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQ 142 (259)
T ss_pred hhhCCHHHHHHHhhhcccCcc--cccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHH
Confidence 654433222222333222211 111123444433321 11 234566777889999999
Q ss_pred eeee----------------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 237 RAAG----------------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 237 r~~~----------------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|+.+ +++|| ++.||...+...+++.++|..+ .|+++-|| |+-+..+||++.++
T Consensus 143 RVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD-----LNLAA~YaDrivll--- 214 (259)
T COG4559 143 RVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD-----LNLAAQYADRIVLL--- 214 (259)
T ss_pred HHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc-----chHHHHhhheeeee---
Confidence 9765 89999 9999999999999999999765 77777899 88777899999999
Q ss_pred CCCCeeeCChHHHHHHHHHHHHHHh
Q 013511 298 KSGGVVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 298 ~~g~vv~~~~~~~~~~r~~~~~~yf 322 (441)
..|+++..+.+.. .++.+.++..|
T Consensus 215 ~~Grv~a~g~p~~-vlt~Etl~~vy 238 (259)
T COG4559 215 HQGRVIASGSPQD-VLTDETLERVY 238 (259)
T ss_pred eCCeEeecCCHHH-hcCHHHHHHHh
Confidence 8999999987654 35677777766
No 49
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.91 E-value=3.8e-26 Score=231.38 Aligned_cols=199 Identities=14% Similarity=0.140 Sum_probs=150.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|++++|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.
T Consensus 2 ~~L~~~nls~~y~~~--~vL~~--vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl------------l~p~sG~I~l~G~ 65 (402)
T PRK09536 2 PMIDVSDLSVEFGDT--TVLDG--VDLSVREGSLVGLVGPNGAGKTTLLRAINGT------------LTPTAGTVLVAGD 65 (402)
T ss_pred ceEEEeeEEEEECCE--EEEEe--eEEEECCCCEEEEECCCCchHHHHHHHHhcC------------CCCCCcEEEECCE
Confidence 577888999999765 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHH---------HHHHHHHHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVK---------ELAQMLERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~---------~l~~~~~~~ls~g 233 (441)
.........+.. .+.+..+...++..+|+.+|+.+... .+. ++.++....||+|
T Consensus 66 ~i~~~~~~~~~~--~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgG 143 (402)
T PRK09536 66 DVEALSARAASR--RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGG 143 (402)
T ss_pred EcCcCCHHHHhc--ceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHH
Confidence 543211112222 23444444456777899998865321 011 1223445679999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
|+||+.+ +|+|| +++||+..+..+++++++++. .+||+++|+ +..+.+.||++.++ ++|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHd-----l~~~~~~adrii~l---~~G 215 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHD-----LDLAARYCDELVLL---ADG 215 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHhCCEEEEE---ECC
Confidence 9998776 99999 999999999999999998853 399999999 88888899999999 899
Q ss_pred CeeeCChHHHHHHHHHHHHHHhc
Q 013511 301 GVVSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 301 ~vv~~~~~~~~~~r~~~~~~yf~ 323 (441)
+++..++... ......+++.|.
T Consensus 216 ~iv~~G~~~e-v~~~~~l~~~~~ 237 (402)
T PRK09536 216 RVRAAGPPAD-VLTADTLRAAFD 237 (402)
T ss_pred EEEEecCHHH-HhCcHHHHHHhC
Confidence 9888765332 123345555553
No 50
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=1.7e-25 Score=210.28 Aligned_cols=182 Identities=14% Similarity=0.174 Sum_probs=137.5
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++.+..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|....
T Consensus 2 ~~~~l~~~~~~~~~~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~ 67 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDD--LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE------------LRPTSGTAYINGYSIR 67 (220)
T ss_pred EEEeeEEEeCCCCceeecc--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEecc
Confidence 3467777776521246765 9999999999999999999999999999999 8999999999997543
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
.. .... ...+.+.++...+++..|+.+|+.+.... +.+ ..+.....||+||+||+++
T Consensus 68 ~~-~~~~--~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 144 (220)
T cd03263 68 TD-RKAA--RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSL 144 (220)
T ss_pred cc-hHHH--hhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHH
Confidence 21 1111 12233444444677788999998764321 111 1233345699999998776
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|+..++.+.++++++..+ +||+++|+ +....+.||++.++ ++|.++..++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~g~i~~~~~ 215 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHS-----MDEAEALCDRIAIM---SDGKLRCIGS 215 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHhcCEEEEE---ECCEEEecCC
Confidence 99999 9999999999999999988654 89999999 77776778999888 8888887654
No 51
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.7e-25 Score=209.24 Aligned_cols=177 Identities=18% Similarity=0.265 Sum_probs=133.9
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~ 65 (213)
T cd03259 2 ELKGLSKTYGSV--RALDD--LSLTVEPGEFLALLGPSGCGKTTLLRLIAGL------------ERPDSGEILIDGRDVT 65 (213)
T ss_pred eeeeeEEEeCCe--eeecc--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEcC
Confidence 356777777653 46665 9999999999999999999999999999999 9999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
.. .. ....+.+.++...++...|+.+|+.+.... +.+ ..+.....||+||+||+.+
T Consensus 66 ~~--~~--~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~l 141 (213)
T cd03259 66 GV--PP--ERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVAL 141 (213)
T ss_pred cC--ch--hhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHH
Confidence 21 11 122344444444577788999998764221 111 1223345699999998775
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.||++.++ ++|.++..
T Consensus 142 a~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~~~~d~v~~l---~~G~i~~~ 212 (213)
T cd03259 142 ARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD-----QEEALALADRIAVM---NEGRIVQV 212 (213)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-----HHHHHHhcCEEEEE---ECCEEEec
Confidence 99999 99999999999999999874 3489999999 76666789999888 77777643
No 52
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.91 E-value=5.8e-26 Score=225.58 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=146.2
Q ss_pred CCchhHHHHHHHHhhh-----------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 97 TPMVSYVNVNAVLEGR-----------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~-----------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
.+|++++|+++.|+.. ...++++ +||++.+|++++|+|+||||||||+++|+|+ +
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl------------~ 71 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDG--VTLRLYEGETLGVVGESGCGKSTFARAIIGL------------V 71 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEee--EEEEEcCCCEEEEECCCCCCHHHHHHHHHCC------------C
Confidence 4678888888888531 1346665 9999999999999999999999999999999 9
Q ss_pred cCCCCcccCCceeeeeeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------H----------
Q 013511 166 DIGQGAITIPGCIAATPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------V---------- 219 (441)
Q Consensus 166 dp~~G~i~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------~---------- 219 (441)
.|.+|+|.++|......... .+....++.+|.+...+++.+|+.+|+.+.... +
T Consensus 72 ~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~ 151 (331)
T PRK15079 72 KATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL 151 (331)
T ss_pred CCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999865322111 122234455555544578889999998653211 0
Q ss_pred HHHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHh
Q 013511 220 KELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVL 285 (441)
Q Consensus 220 ~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~ 285 (441)
.+..+.+...||+||+||+.+ +|+|| +++||...+..+.+++++++. .++|++||| +..+.
T Consensus 152 ~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd-----l~~~~ 226 (331)
T PRK15079 152 PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD-----LAVVK 226 (331)
T ss_pred hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHH
Confidence 112234456799999999876 99999 999999999999999988753 399999999 88887
Q ss_pred cCCCCeEEEEecCCCCeeeCChH
Q 013511 286 KNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 286 ~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+.||++.+| ..|.+++.++.
T Consensus 227 ~~~dri~vl---~~G~ive~g~~ 246 (331)
T PRK15079 227 HISDRVLVM---YLGHAVELGTY 246 (331)
T ss_pred HhCCEEEEE---ECCEEEEEcCH
Confidence 889999999 88999987753
No 53
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.91 E-value=1.6e-25 Score=212.08 Aligned_cols=182 Identities=17% Similarity=0.211 Sum_probs=136.9
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~ 65 (232)
T cd03218 2 RAENLSKRYGKR--KVVNG--VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL------------VKPDSGKILLDGQDIT 65 (232)
T ss_pred eEEEEEEEeCCE--Eeecc--ceeEecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEecc
Confidence 345677777654 36655 9999999999999999999999999999999 9999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccceeee
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRAAG 240 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~~ 240 (441)
....... .+..+.+.++...+|+.+|+.+|+.+.... +..+ .+.....||+||+||+++
T Consensus 66 ~~~~~~~-~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 66 KLPMHKR-ARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cCCHhHH-HhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 2111110 112344445555678888999998764321 1111 122335699999998775
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|.++..++
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 216 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHN-----VRETLSITDRAYII---YEGKVLAEGT 216 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCeEEEEeC
Confidence 99999 999999999999999988753 389999999 77777789999998 8888876654
No 54
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.9e-25 Score=228.63 Aligned_cols=190 Identities=19% Similarity=0.229 Sum_probs=157.1
Q ss_pred CCCchhHHHHHHHHhhh---------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 96 ETPMVSYVNVNAVLEGR---------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~---------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
..|++++.|+++.|... ...++++ +||++.+||+++|+|++|||||||.|+|+|+ +.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~--VSf~l~~GE~lglVGeSGsGKSTlar~i~gL------------~~ 342 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDD--VSFDLREGETLGLVGESGSGKSTLARILAGL------------LP 342 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeee--eeeEecCCCEEEEECCCCCCHHHHHHHHhCC------------CC
Confidence 56788899999999741 2355655 9999999999999999999999999999999 99
Q ss_pred CCCCcccCCceeeeeeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHHH------------H----------HH
Q 013511 167 IGQGAITIPGCIAATPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------V----------KE 221 (441)
Q Consensus 167 p~~G~i~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~----------~~ 221 (441)
|++|.|.+.|... ..... ....+..+.||+|...+.+++|+.+++.-.... + ..
T Consensus 343 P~~G~i~~~g~~~-~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~ 421 (539)
T COG1123 343 PSSGSIIFDGQDL-DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE 421 (539)
T ss_pred CCCceEEEeCccc-ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH
Confidence 9999999999762 21121 233456789999999999999998887543321 1 12
Q ss_pred HHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcC
Q 013511 222 LAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKN 287 (441)
Q Consensus 222 l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~ 287 (441)
+.++++.+|||||+||+++ +|+|| ++.||+..+..+.+++++++.+ +.++++|| |......
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD-----l~vV~~i 496 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD-----LAVVRYI 496 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC-----HHHHHhh
Confidence 4567778899999999887 99999 9999999999999999988754 89999999 8888889
Q ss_pred CCCeEEEEecCCCCeeeCChH
Q 013511 288 RPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 288 ~~~v~vl~l~~~g~vv~~~~~ 308 (441)
||+|.|| +.|.+|+.++.
T Consensus 497 ~drv~vm---~~G~iVE~G~~ 514 (539)
T COG1123 497 ADRVAVM---YDGRIVEEGPT 514 (539)
T ss_pred CceEEEE---ECCeEEEeCCH
Confidence 9999999 99999999863
No 55
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=9.4e-26 Score=214.85 Aligned_cols=185 Identities=19% Similarity=0.275 Sum_probs=138.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~--~il~~--~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~ 64 (240)
T PRK09493 1 MIEFKNVSKHFGPT--QVLHN--IDLNIDQGEVVVIIGPSGSGKSTLLRCINKL------------EEITSGDLIVDGLK 64 (240)
T ss_pred CEEEEeEEEEECCe--EEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEE
Confidence 35567777777653 36665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCccce
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..............+.+.++...+++..|+.+|+.+.... +.+ ..+.....||+|++||
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (240)
T PRK09493 65 VNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQR 144 (240)
T ss_pred CCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHH
Confidence 4221000011123344555555677788999998764210 111 1123335699999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+++ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++ ++|+++.
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~~ 216 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHE-----IGFAEKVASRLIFI---DKGRIAE 216 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEe
Confidence 765 99999 999999999999999988743 489999999 77776789999998 8898887
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 217 ~g~ 219 (240)
T PRK09493 217 DGD 219 (240)
T ss_pred eCC
Confidence 665
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.91 E-value=9.6e-26 Score=221.81 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=142.8
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+++.|++++|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~--~~l~~--is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl------------~~~~~G~i~i~g~~~ 66 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDE--VSFEAQKGRIVGFLGPNGAGKSTTMKIITGY------------LPPDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEECCE--EEEEE--eEEEEeCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEc
Confidence 4567788888654 46765 9999999999999999999999999999999 999999999999754
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceee
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAA 239 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~ 239 (441)
... +......+.+.++...+++.+|+.+|+.++... +.+ ..++....||+|++||+.
T Consensus 67 ~~~---~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 143 (301)
T TIGR03522 67 LQN---PKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVG 143 (301)
T ss_pred ccC---hHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHH
Confidence 321 111123344555555688889999999764421 111 123344669999999876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+ +|+|| +++||+.+++.+.+++++++.. +||+++|+ +.+..+.||++.++ ++|.++..++
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~-----l~~~~~~~d~i~~l---~~G~i~~~g~ 215 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHI-----MQEVEAICDRVIII---NKGKIVADKK 215 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCEEEEeCC
Confidence 5 99999 9999999999999999998644 89999999 88888889999999 8999887765
Q ss_pred H
Q 013511 308 K 308 (441)
Q Consensus 308 ~ 308 (441)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 3
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.4e-25 Score=212.66 Aligned_cols=187 Identities=18% Similarity=0.215 Sum_probs=140.7
Q ss_pred chhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~--~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g 66 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKD--VSLSVPKGEIFGIIGRSGAGKSTLIRCINGL------------ERPTSGSVLVDG 66 (233)
T ss_pred CeEEecceEEccCCCCceeeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECC
Confidence 466788998887541 136665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCcc
Q 013511 177 CIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 177 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~ 235 (441)
........... .....+.+.++...+|+.+|+.+|+.+.... +.+ +.+.....||+||+
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 146 (233)
T cd03258 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQK 146 (233)
T ss_pred EEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHH
Confidence 75432111000 0123344555555678889999998764211 111 12233456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| ++++|+..++.+.++++++. ..+||+++|+ +....+.+|++.++ ++|+
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-----~~~~~~~~d~i~~l---~~G~ 218 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE-----MEVVKRICDRVAVM---EKGE 218 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 88765 99999 99999999999999998874 2389999999 77776788999888 8888
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..++
T Consensus 219 i~~~~~ 224 (233)
T cd03258 219 VVEEGT 224 (233)
T ss_pred EEEecC
Confidence 887654
No 58
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1e-25 Score=220.33 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=140.8
Q ss_pred chhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
|++++|+++.|+... ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~--vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~ 66 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFD--IDLEVKKGSYTALIGHTGSGKSTLLQHLNGL------------LQPTEGKVTVG 66 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceee--eEEEEcCCCEEEEECCCCChHHHHHHHHhcC------------CCCCCcEEEEC
Confidence 456677888886321 136765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeec--c--CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH----------HHHHHHHHh
Q 013511 176 GCIAATPI--E--LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE----------LAQMLERQF 230 (441)
Q Consensus 176 G~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~----------l~~~~~~~l 230 (441)
|....... . .......++.++.+...+|. .|+.+|+.+.... +.+ +.+.....|
T Consensus 67 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L 145 (288)
T PRK13643 67 DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL 145 (288)
T ss_pred CEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccC
Confidence 98653110 0 01222345555655445565 5999999875421 111 112233458
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|+||+||+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +..+.+.||++.++
T Consensus 146 SgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd-----~~~~~~~~dri~~l--- 217 (288)
T PRK13643 146 SGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL-----MDDVADYADYVYLL--- 217 (288)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhCCEEEEE---
Confidence 9999998776 99999 999999999999999988753 399999999 87777789999999
Q ss_pred CCCCeeeCChH
Q 013511 298 KSGGVVSRNSK 308 (441)
Q Consensus 298 ~~g~vv~~~~~ 308 (441)
++|.++..++.
T Consensus 218 ~~G~i~~~g~~ 228 (288)
T PRK13643 218 EKGHIISCGTP 228 (288)
T ss_pred ECCEEEEECCH
Confidence 89999887753
No 59
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1.8e-25 Score=210.08 Aligned_cols=179 Identities=16% Similarity=0.200 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.....
T Consensus 3 ~~~~~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~ 66 (220)
T cd03265 3 VENLVKKYGDF--EAVRG--VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL------------LKPTSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEECCE--Eeeec--eeEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEecCc
Confidence 45666667653 36655 9999999999999999999999999999999 89999999999964421
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
. .......+.+.++...+++..|+.+|+.+.... +.+ ..+.....||+||+||+++
T Consensus 67 ~---~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 143 (220)
T cd03265 67 E---PREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIA 143 (220)
T ss_pred C---hHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHH
Confidence 1 111122344444445677888999998764321 111 1223345699999998776
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +......|+++.++ ++|.++..+.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 215 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY-----MEEAEQLCDRVAII---DHGRIIAEGT 215 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCEEEEeCC
Confidence 99999 999999999999999988742 389999999 77777789999888 8888876543
No 60
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=2.7e-25 Score=211.98 Aligned_cols=184 Identities=16% Similarity=0.209 Sum_probs=140.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|..
T Consensus 2 ~i~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~ 65 (242)
T TIGR03411 2 ILYLEGLSVSFDGF--KALND--LSLYVDPGELRVIIGPNGAGKTTMMDVITGK------------TRPDEGSVLFGGTD 65 (242)
T ss_pred eEEEEeeEEEcCCe--EEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEECCee
Confidence 56778899888754 46765 9999999999999999999999999999999 99999999999964
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-------------------HHHHH---------HHHHHHHh
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------------LVKEL---------AQMLERQF 230 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------------~~~~l---------~~~~~~~l 230 (441)
........ ....++.+.++...+|+.+|+.+|+.++.. .+..+ .+.....|
T Consensus 66 ~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (242)
T TIGR03411 66 LTGLPEHQ-IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLL 144 (242)
T ss_pred cCCCCHHH-HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 32111000 112235555555578888999999876421 01111 12233468
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+|++||+.+ +|+|| ++++|+..++.+.++++++... +||+++|+ +......||++.++ +
T Consensus 145 S~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~ 216 (242)
T TIGR03411 145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHD-----MEFVRSIADKVTVL---H 216 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHhCCEEEEE---E
Confidence 9999988765 99999 9999999999999999988644 89999999 77777789999998 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|+++..+.
T Consensus 217 ~g~~~~~~~ 225 (242)
T TIGR03411 217 QGSVLAEGS 225 (242)
T ss_pred CCeEEeeCC
Confidence 888887665
No 61
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=3.3e-25 Score=199.43 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=146.9
Q ss_pred chhHHHHHHHHhhh---hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLEGR---RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~---~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
|+++.|+.+.|.+. ...++++ +++++.+|++|.|+|.||||||||+++|+|+ +.|++|+|.++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~--~sL~I~~g~FvtViGsNGAGKSTlln~iaG~------------l~~t~G~I~Id 66 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNG--LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD------------LKPTSGQILID 66 (263)
T ss_pred CcccccceeeecCCChhHHHHHhc--CceeecCCceEEEEcCCCccHHHHHHHhhCc------------cccCCceEEEC
Confidence 34455555544321 1245654 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------HH------------------HHHHHHH
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------VK------------------ELAQMLE 227 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------~~------------------~l~~~~~ 227 (441)
|.++.............-+||.|....++.+|++||+.++... .. .......
T Consensus 67 g~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i 146 (263)
T COG1101 67 GVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRI 146 (263)
T ss_pred ceecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChh
Confidence 9876543322222222346789988999999999999886432 00 1112223
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--C-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--N-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
..|||||+|-+++ +++|| |+.|||...+.++++-+++-. . +.+++||. |++++.+.+|..+
T Consensus 147 glLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn-----m~~Al~yG~RlIm 221 (263)
T COG1101 147 GLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN-----MEDALDYGNRLIM 221 (263)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc-----HHHHHhhCCeEEE
Confidence 4589999986654 99999 999999988888777665522 2 77888999 9999999999988
Q ss_pred EEecCCCCeeeCC-hHHHHHHHHHHHHHHhc
Q 013511 294 VKLQKSGGVVSRN-SKVRQKARSYRIREYFY 323 (441)
Q Consensus 294 l~l~~~g~vv~~~-~~~~~~~r~~~~~~yf~ 323 (441)
+ ++|.++.+- .+++..+....+-+.|.
T Consensus 222 L---h~G~IvlDv~g~~k~~L~v~dli~~F~ 249 (263)
T COG1101 222 L---HSGKIVLDVTGEEKASLTVLDLIQMFE 249 (263)
T ss_pred E---eCCeEEEEcccccccCCcHHHHHHHHH
Confidence 8 899887543 24444444445555554
No 62
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=2.8e-25 Score=211.72 Aligned_cols=201 Identities=15% Similarity=0.224 Sum_probs=146.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 65 (241)
T PRK10895 2 ATLTAKNLAKAYKGR--RVVED--VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI------------VPRDAGNIIIDDE 65 (241)
T ss_pred ceEEEeCcEEEeCCE--EEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCE
Confidence 467788999999754 46665 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCccc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~~ 236 (441)
......... ..+..+.+.++...+++.+|+.+|+.++... +.+ +.+.....||+|++|
T Consensus 66 ~~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (241)
T PRK10895 66 DISLLPLHA-RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERR 144 (241)
T ss_pred ECCCCCHHH-HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHH
Confidence 542211000 0122344555555677788999998764210 111 122334569999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++ +.|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~-----~~~~~~~~d~v~~l---~~G~i~ 216 (241)
T PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN-----VRETLAVCERAYIV---SQGHLI 216 (241)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcC-----HHHHHHhcCEEEEE---eCCeEE
Confidence 8775 99999 999999999999999888753 389999999 76676788999888 888888
Q ss_pred eCChHHHHHHHHHHHHHHhcC
Q 013511 304 SRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 304 ~~~~~~~~~~r~~~~~~yf~g 324 (441)
..++.... .......++|.+
T Consensus 217 ~~~~~~~~-~~~~~~~~~~~~ 236 (241)
T PRK10895 217 AHGTPTEI-LQDEHVKRVYLG 236 (241)
T ss_pred eeCCHHHH-hcChhHhHhhcC
Confidence 76653221 122335555544
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.90 E-value=1.7e-25 Score=214.34 Aligned_cols=186 Identities=18% Similarity=0.238 Sum_probs=140.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|++|+|.++|.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 65 (250)
T PRK11264 2 SAIEVKNLVKKFHGQ--TVLHG--IDLEVKPGEVVAIIGPSGSGKTTLLRCINLL------------EQPEAGTIRVGDI 65 (250)
T ss_pred CcEEEeceEEEECCe--eeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCE
Confidence 467888999988754 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeecc------CcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH---------HHHHHHHh
Q 013511 178 IAATPIE------LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL---------AQMLERQF 230 (441)
Q Consensus 178 ~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l---------~~~~~~~l 230 (441)
....... ........+.+.++...+++..|+.+|+.+.... +.++ .+.....|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 145 (250)
T PRK11264 66 TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRL 145 (250)
T ss_pred EccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhC
Confidence 5432100 0011122344555555677788999998753210 1111 12234569
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|+||+||+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.|+++.++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~-----~~~~~~~~d~i~~l--- 217 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE-----MSFARDVADRAIFM--- 217 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE---
Confidence 9999998765 99999 999999999999999988753 389999999 77666778999999
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|+++..++
T Consensus 218 ~~G~i~~~~~ 227 (250)
T PRK11264 218 DQGRIVEQGP 227 (250)
T ss_pred ECCEEEEeCC
Confidence 8888887665
No 64
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.90 E-value=1.3e-25 Score=217.52 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=141.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 69 (269)
T PRK11831 6 NLVDMRGVSFTRGNR--CIFDN--ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ------------IAPDHGEILFDGE 69 (269)
T ss_pred ceEEEeCeEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCE
Confidence 578889999988754 36665 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCcc
Q 013511 178 IAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~ 235 (441)
.......... .....+.+.++...+|+.+|+.+|+.+.... +.. +.+.....||+||+
T Consensus 70 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~ 149 (269)
T PRK11831 70 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMA 149 (269)
T ss_pred EccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 5422111111 0122344444555678888999998764211 011 11223456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.|+++.++ ++|.
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-----~~~~~~~~d~v~~l---~~G~ 221 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD-----VPEVLSIADHAYIV---ADKK 221 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC-----HHHHHHhhCEEEEE---ECCE
Confidence 98775 99999 999999999999999998742 389999999 77777788999888 7888
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..++
T Consensus 222 i~~~g~ 227 (269)
T PRK11831 222 IVAHGS 227 (269)
T ss_pred EEEeCC
Confidence 887664
No 65
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.9e-25 Score=211.99 Aligned_cols=183 Identities=15% Similarity=0.220 Sum_probs=139.9
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
.+.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|....
T Consensus 26 ~~~~~~~~~~~~--~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl------------~~p~~G~i~i~g~~~~ 89 (269)
T cd03294 26 SKEEILKKTGQT--VGVND--VSLDVREGEIFVIMGLSGSGKSTLLRCINRL------------IEPTSGKVLIDGQDIA 89 (269)
T ss_pred hhhhhhhhcCCc--eEeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEEcc
Confidence 567999999876 46665 9999999999999999999999999999999 9999999999997543
Q ss_pred eeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCcccee
Q 013511 181 TPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRA 238 (441)
Q Consensus 181 ~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~ 238 (441)
........ ....+.+.++...+|...|+.+|+.+.... +.++ .+.....||+||+||+
T Consensus 90 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 169 (269)
T cd03294 90 AMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRV 169 (269)
T ss_pred ccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHH
Confidence 21111110 112344555555678888999998764211 1111 1223346999999987
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.||++.++ +.|.++.
T Consensus 170 ~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~-----~~~~~~~~d~v~~l---~~G~i~~ 241 (269)
T cd03294 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD-----LDEALRLGDRIAIM---KDGRLVQ 241 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE---ECCEEEE
Confidence 75 99999 99999999999999998874 2499999999 77777789999888 7888877
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 242 ~g~ 244 (269)
T cd03294 242 VGT 244 (269)
T ss_pred eCC
Confidence 654
No 66
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.90 E-value=4.9e-25 Score=216.93 Aligned_cols=168 Identities=16% Similarity=0.211 Sum_probs=132.1
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|....... ... ...+.
T Consensus 7 ~~l~~--vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~~-~~~--~~~i~ 69 (302)
T TIGR01188 7 KAVDG--VNFKVREGEVFGFLGPNGAGKTTTIRMLTTL------------LRPTSGTARVAGYDVVREP-RKV--RRSIG 69 (302)
T ss_pred eEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEcccCH-HHH--HhhcE
Confidence 36655 9999999999999999999999999999999 9999999999997542211 111 22344
Q ss_pred cccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee----------EEEe
Q 013511 195 LEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 195 ~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~----------lIlD 244 (441)
+.++...+++.+|+.+|+.++... +.+ ..+.....||+||+||+++ +|+|
T Consensus 70 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 149 (302)
T TIGR01188 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149 (302)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 444555678889999999875321 111 1233445699999999876 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 245 T-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
| +++||+..++.+.+++++++. .+||+++|+ +....+.||++.++ ++|.++..++
T Consensus 150 EPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~-----~~~~~~~~d~v~~l---~~G~i~~~g~ 207 (302)
T TIGR01188 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHY-----MEEADKLCDRIAII---DHGRIIAEGT 207 (302)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE---ECCEEEEECC
Confidence 9 999999999999999998853 399999999 88887889999999 8899887665
No 67
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.90 E-value=2.2e-25 Score=207.74 Aligned_cols=175 Identities=16% Similarity=0.253 Sum_probs=133.4
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~ 66 (208)
T cd03268 3 TNDLTKTYGKK--RVLDD--ISLHVKKGEIYGFLGPNGAGKTTTMKIILGL------------IKPDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEECCe--EeEee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCCcccc
Confidence 45666666543 46655 9999999999999999999999999999999 89999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------HH---------HHHHHHHHHhccCccceeee-----
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------VK---------ELAQMLERQFNGNAESRAAG----- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------~~---------~l~~~~~~~ls~g~~~r~~~----- 240 (441)
. ... ...+.+.++...+++..|+.+|+.++... +. ...+.....||+||+||+++
T Consensus 67 ~--~~~--~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 142 (208)
T cd03268 67 N--IEA--LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALL 142 (208)
T ss_pred h--HHH--HhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHh
Confidence 1 111 12344444444678888999998775321 11 12344556799999998765
Q ss_pred -----EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 241 -----MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 241 -----lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+|+|| +++||+..++.+.+++++++. .+||+++|+ +......+|++.++ +.|.++.
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~-----~~~~~~~~d~v~~l---~~g~i~~ 206 (208)
T cd03268 143 GNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL-----LSEIQKVADRIGII---NKGKLIE 206 (208)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHhcCEEEEE---ECCEEEe
Confidence 99999 999999999999999988753 489999999 77666778999888 7777664
No 68
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.90 E-value=4.3e-25 Score=206.43 Aligned_cols=176 Identities=18% Similarity=0.264 Sum_probs=133.5
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~v~~~g~~~~~ 66 (213)
T cd03301 3 LENVTKRFGNV--TALDD--LNLDIADGEFVVLLGPSGCGKTTTLRMIAGL------------EEPTSGRIYIGGRDVTD 66 (213)
T ss_pred EEeeEEEECCe--eeeec--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECCc
Confidence 45677777654 35655 9999999999999999999999999999999 89999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
.. . ....+.+.++...++...|+.+|+.++... +.. ..+.....||+||+||+++
T Consensus 67 ~~--~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 67 LP--P--KDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred CC--c--ccceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHH
Confidence 11 1 112345555555677788999998764211 111 1123335699999998765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+|+|| ++++|+..++.+.++++++. ..+||+++|+ +......++++.++ ++|.++..
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~-----~~~~~~~~d~i~~l---~~g~~~~~ 212 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD-----QVEAMTMADRIAVM---NDGQIQQI 212 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCeEEEE---ECCEEEec
Confidence 99999 99999999999999998874 3489999999 77666778998888 78877654
No 69
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=1.6e-25 Score=214.29 Aligned_cols=184 Identities=15% Similarity=0.188 Sum_probs=136.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-----CCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-----QGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-----~G~i~ 173 (441)
|++++|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ +.|. +|+|.
T Consensus 1 ~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~~~~~~G~i~ 64 (247)
T TIGR00972 1 AIEIENLNLFYGEK--EALKN--INLDIPKNQVTALIGPSGCGKSTLLRSLNRM------------NDLVPGVRIEGKVL 64 (247)
T ss_pred CEEEEEEEEEECCe--eeecc--eeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCcCCCCceEEE
Confidence 34566777777654 35655 9999999999999999999999999999999 8888 99999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH-------------HHHHHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE-------------LAQMLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~-------------l~~~~~~ 228 (441)
++|................+.+.++...+++ .|+.+|+.+.... +.. ..+....
T Consensus 65 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 143 (247)
T TIGR00972 65 FDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL 143 (247)
T ss_pred ECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc
Confidence 9997543210011111233444444445677 8999998764211 111 1122234
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+||+||+.+ +|+|| +++||+..++.+.+++++++.. +||+++|+ +....+.||++.++
T Consensus 144 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l-- 216 (247)
T TIGR00972 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHN-----MQQAARISDRTAFF-- 216 (247)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecC-----HHHHHHhCCEEEEE--
Confidence 689999998765 99999 9999999999999999887544 89999999 77777789999998
Q ss_pred cCCCCeeeCCh
Q 013511 297 QKSGGVVSRNS 307 (441)
Q Consensus 297 ~~~g~vv~~~~ 307 (441)
++|+++..++
T Consensus 217 -~~G~i~~~~~ 226 (247)
T TIGR00972 217 -YDGELVEYGP 226 (247)
T ss_pred -ECCEEEEeCC
Confidence 8898887765
No 70
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.5e-25 Score=222.35 Aligned_cols=189 Identities=13% Similarity=0.129 Sum_probs=142.3
Q ss_pred CchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc----CCCCc
Q 013511 98 PMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD----IGQGA 171 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld----p~~G~ 171 (441)
++++++|+++.|+..+ ..++++ +||++.+|++++|+|+||||||||+++|+|+ ++ |++|+
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl------------l~~~~~~~~G~ 67 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDR--ISYSVKQGEVVGIVGESGSGKSVSSLAIMGL------------IDYPGRVMAEK 67 (326)
T ss_pred ceEEEeCeEEEECCCCccEEEEee--eEEEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCCCCcceE
Confidence 3577888888886532 247766 9999999999999999999999999999999 76 47899
Q ss_pred ccCCceeeeeeccCcC----CCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH------------HH
Q 013511 172 ITIPGCIAATPIELPI----DPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE------------LA 223 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~------------l~ 223 (441)
|.++|..+........ ....++.+|.+...+++.+++.+++...... +.+ ..
T Consensus 68 i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l 147 (326)
T PRK11022 68 LEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL 147 (326)
T ss_pred EEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH
Confidence 9999986532211111 1123455565544577778877655432110 111 12
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
+.+...||+||+||+++ +|+|| +++||...+..+++++++++. .++|++||+ +..+.+.+|
T Consensus 148 ~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd-----l~~~~~~ad 222 (326)
T PRK11022 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD-----LALVAEAAH 222 (326)
T ss_pred hCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCC
Confidence 34556799999999876 99999 999999999999999998853 389999999 887777899
Q ss_pred CeEEEEecCCCCeeeCChH
Q 013511 290 NVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 290 ~v~vl~l~~~g~vv~~~~~ 308 (441)
++.+| +.|++++.++.
T Consensus 223 ri~vm---~~G~ive~g~~ 238 (326)
T PRK11022 223 KIIVM---YAGQVVETGKA 238 (326)
T ss_pred EEEEE---ECCEEEEECCH
Confidence 99999 89999988763
No 71
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.4e-25 Score=222.33 Aligned_cols=202 Identities=14% Similarity=0.236 Sum_probs=150.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+++..++.+.|+.. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 28 ~~~~~~~~~~~~~~--~~L~~--isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl------------~~p~sG~I~i~G~~ 91 (400)
T PRK10070 28 GLSKEQILEKTGLS--LGVKD--ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL------------IEPTRGQVLIDGVD 91 (400)
T ss_pred cccHHHHHhhcCCe--EEEEe--EEEEEcCCCEEEEECCCCchHHHHHHHHHcC------------CCCCCCEEEECCEE
Confidence 46677888888654 46765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccc
Q 013511 179 AATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~ 236 (441)
+.......+. .+..+.+.++...+|+++|+.+|+.+.... +.+ +.+.....||+||+|
T Consensus 92 i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~Q 171 (400)
T PRK10070 92 IAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQ 171 (400)
T ss_pred CCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHH
Confidence 5322111110 112345555555788899999999875321 111 123445679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +..+.+.||++.++ ++|.+
T Consensus 172 Rv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd-----~~~~~~~~Dri~vL---~~G~i 243 (400)
T PRK10070 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD-----LDEAMRIGDRIAIM---QNGEV 243 (400)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC-----HHHHHHhCCEEEEE---ECCEE
Confidence 9876 99999 99999999999999998874 2389999999 88777889999999 88888
Q ss_pred eeCChHHH--HHHHHHHHHHHhcC
Q 013511 303 VSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 303 v~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+..++... .......+++|+.+
T Consensus 244 ~~~g~~~~l~~~~~~~~v~~~~~~ 267 (400)
T PRK10070 244 VQVGTPDEILNNPANDYVRTFFRG 267 (400)
T ss_pred EecCCHHHHHhCcccHHHHHHHhc
Confidence 87765322 22223345555544
No 72
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.90 E-value=2.4e-25 Score=208.29 Aligned_cols=179 Identities=21% Similarity=0.250 Sum_probs=132.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|+++.|++. ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~-~~il~~--is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~ 65 (214)
T TIGR02673 1 MIEFHNVSKAYPGG-VAALHD--VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA------------LTPSRGQVRIAGED 65 (214)
T ss_pred CEEEEeeeEEeCCC-ceeecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEE
Confidence 45667888888421 146665 9999999999999999999999999999999 89999999999975
Q ss_pred eeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccce
Q 013511 179 AATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r 237 (441)
......... .....+.+.++...+|+..|+.+|+.+.... +.++ .+.....||+||+||
T Consensus 66 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 145 (214)
T TIGR02673 66 VNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR 145 (214)
T ss_pred cccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH
Confidence 432111000 1122344444555677788999998764211 1111 123345799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+++ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++ +.|
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~-----~~~~~~~~d~i~~l---~~G 213 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD-----LSLVDRVAHRVIIL---DDG 213 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCEEEEe---cCC
Confidence 776 99999 999999999999999998742 489999999 77776778998888 554
No 73
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=1e-24 Score=217.77 Aligned_cols=221 Identities=18% Similarity=0.253 Sum_probs=163.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+.+++.+++|.|++. .|.++ +||++.+|++.+|+|.||||||||+++|.|+ +.|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~~~--~And~--V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~------------~~P~~GeI~v~G~ 66 (501)
T COG3845 3 PALEMRGITKRFPGV--VANDD--VSLSVKKGEIHALLGENGAGKSTLMKILFGL------------YQPDSGEIRVDGK 66 (501)
T ss_pred ceEEEeccEEEcCCE--EecCc--eeeeecCCcEEEEeccCCCCHHHHHHHHhCc------------ccCCcceEEECCE
Confidence 346778999999964 56655 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCC-CCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHHH---------HHHHhccC
Q 013511 178 IAATPIELPID-PVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQM---------LERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~~---------~~~~ls~g 233 (441)
...- ..|.+ .+.|+++.+|+..+++.+|+.||+.++... ++++.++ ....||-|
T Consensus 67 ~v~~--~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG 144 (501)
T COG3845 67 EVRI--KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVG 144 (501)
T ss_pred Eecc--CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcc
Confidence 6532 22222 235666667777899999999999887531 2222222 22458899
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
++||+.+ ||+|| |+-|.|...+.+.++++.++.. +||++||. |.++.+.||++.|+ ..|
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHK-----L~Ev~~iaDrvTVL---R~G 216 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHK-----LKEVMAIADRVTVL---RRG 216 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc-----HHHHHHhhCeeEEE---eCC
Confidence 9998876 99999 8999999999999999999765 99999999 99999999999999 777
Q ss_pred CeeeCChHHHHHHHHHHHHHHhcCCC-------CCCCceeEEeecCceEEEE
Q 013511 301 GVVSRNSKVRQKARSYRIREYFYGLT-------NDLSPHANVANFSDFLVYR 345 (441)
Q Consensus 301 ~vv~~~~~~~~~~r~~~~~~yf~g~~-------~~l~p~~~~~~~~~l~~~~ 345 (441)
.++..-.+ ........+.+...|.. ..-.|....+.+.++++..
T Consensus 217 kvvgt~~~-~~~~t~~ela~lMvG~~v~~~~~~~~~~pg~~vL~V~~L~v~~ 267 (501)
T COG3845 217 KVVGTVDP-VAETTEEELAELMVGREVVLRVVKPPSTPGEVVLEVEDLSVKD 267 (501)
T ss_pred eEEeeecC-CCCCCHHHHHHHhcCCccccccccCCCCCCCeEEEEeeeEeec
Confidence 66543220 01112223344444431 1344555666666666543
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.4e-25 Score=217.88 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=139.8
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|+.. ..++++ +||++.+|++++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 67 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKG--LSLSIPEGSKTALLGPNGAGKSTLLLHLNGI------------YLPQRGRVKVMGR 67 (274)
T ss_pred ceEEEEEEEEEeCCC-Ceeeee--EEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCceEEEECCE
Confidence 367778888888532 136765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..............++.++.+...+ ...|+.+|+.+.... +.+ ..++....||+|++||
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qr 146 (274)
T PRK13647 68 EVNAENEKWVRSKVGLVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKR 146 (274)
T ss_pred ECCCCCHHHHHhhEEEEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHH
Confidence 5422111111222344445432223 356999999764321 111 1233446799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+.+ +|+|| ++++|+..++.+.+++++++. .+||+++|+ ++...+.||++.++ +.|+++.
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~-----~~~~~~~~d~i~~l---~~G~i~~ 218 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD-----VDLAAEWADQVIVL---KEGRVLA 218 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 775 99999 999999999999999998853 399999999 87777789999999 8898887
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.++.
T Consensus 219 ~g~~ 222 (274)
T PRK13647 219 EGDK 222 (274)
T ss_pred ECCH
Confidence 6653
No 75
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.90 E-value=5.6e-25 Score=206.91 Aligned_cols=182 Identities=19% Similarity=0.179 Sum_probs=136.5
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~ 65 (222)
T cd03224 2 EVENLNAGYGKS--QILFG--VSLTVPEGEIVALLGRNGAGKTTLLKTIMGL------------LPPRSGSIRFDGRDIT 65 (222)
T ss_pred EEeeEEeecCCe--eEeee--eeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcC
Confidence 356777777654 36665 9999999999999999999999999999999 9999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------HHHHH----------HHHHHHhccCccceeee-
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------VKELA----------QMLERQFNGNAESRAAG- 240 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~~~l~----------~~~~~~ls~g~~~r~~~- 240 (441)
....... ....+.+.++...+|+.+|+.+|+.+.... +..+. +.....||+|++||+++
T Consensus 66 ~~~~~~~-~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 66 GLPPHER-ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred CCCHHHH-HhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHH
Confidence 2111011 122344445555678888999998764221 11111 22234599999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.|+++.++ ++|.++..++
T Consensus 145 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 215 (222)
T cd03224 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQN-----ARFALEIADRAYVL---ERGRVVLEGT 215 (222)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhccEEEEe---eCCeEEEeCC
Confidence 99999 999999999999999988753 499999999 77777789999888 7888876654
No 76
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.6e-25 Score=207.63 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=131.7
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. .++++ +||++.+| +++|+||||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~~~~~~~~~--~~l~~--vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~ 65 (211)
T cd03264 3 LENLTKRYGKK--RALDG--VSLTLGPG-MYGLLGPNGAGKTTLMRILATL------------TPPSSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEECCE--EEEcc--eeEEEcCC-cEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCCcccc
Confidence 34556666543 35655 99999999 9999999999999999999999 99999999999965422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~r~~~- 240 (441)
.. ... ...+.+.++...+|+.+|+.+|+.+.... +. .+.+.....||+||+||+++
T Consensus 66 ~~-~~~--~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 66 QP-QKL--RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred ch-HHH--HhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHH
Confidence 11 111 22344444445678888999998764221 11 11233445699999998776
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.+|++.++ ++|.++..
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~-----~~~~~~~~d~i~~l---~~g~i~~~ 210 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHI-----VEDVESLCNQVAVL---NKGKLVFE 210 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHhCCEEEEE---ECCEEEec
Confidence 99999 999999999999999998854 489999999 77666678999888 78877643
No 77
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=2.3e-24 Score=188.72 Aligned_cols=201 Identities=15% Similarity=0.202 Sum_probs=150.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+.+++.|+||+|+.. .++++ +|++..+|+++.|+|.+|||||||+|||.=+ ..|..|.|.++|.
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKG--vSL~A~~GdVisIIGsSGSGKSTfLRCiN~L------------E~P~~G~I~v~ge 68 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKG--VSLQANAGDVISIIGSSGSGKSTFLRCINFL------------EKPSAGSIRVNGE 68 (256)
T ss_pred cceehhHHHhhcccc--hhhcc--eeeecCCCCEEEEecCCCCchhHHHHHHHhh------------cCCCCceEEECCe
Confidence 457889999999998 46655 9999999999999999999999999999988 9999999999998
Q ss_pred eeeeeccCc-----CCC------CCCCCcccceEEEecccCccCCHHHHHH----------------H-----HHHHHHH
Q 013511 178 IAATPIELP-----IDP------VEGIPLEMPLVYFFGHATPSNNVELYKV----------------L-----VKELAQM 225 (441)
Q Consensus 178 ~~~~~~~~~-----~~~------~~~~~~~~~~~~~~g~~tv~en~~~~~~----------------~-----~~~l~~~ 225 (441)
.+....... .+. +..+.+.++...++.|+|+.+|+.-... + +.+-.+.
T Consensus 69 ei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 69 EIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 775433221 111 1123344555678999999999743210 0 1112345
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
++..|||||+||+++ +++|| |+.|||+-.-.++..++++... |.+++||+ |.-+...+..|.
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHE-----M~FAR~Vss~v~ 223 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE-----MGFARDVSSHVI 223 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeee-----hhHHHhhhhheE
Confidence 667799999999887 99999 9999999888888999888654 89999999 776666778877
Q ss_pred EEEecCCCCeeeCChHHH--HHHHHHHHHHHh
Q 013511 293 VVKLQKSGGVVSRNSKVR--QKARSYRIREYF 322 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~~--~~~r~~~~~~yf 322 (441)
++ ..|.+-+.+++.. ..++..++++|.
T Consensus 224 fL---h~G~iEE~G~P~qvf~nP~S~RlkqFl 252 (256)
T COG4598 224 FL---HQGKIEEEGPPEQVFGNPQSPRLKQFL 252 (256)
T ss_pred Ee---ecceecccCChHHHhcCCCCHHHHHHH
Confidence 77 7777766766432 223344445443
No 78
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=9e-25 Score=219.81 Aligned_cols=183 Identities=14% Similarity=0.210 Sum_probs=142.0
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee----
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI---- 178 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~---- 178 (441)
.++.+.|+.. .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 28 ~~~~~~~g~~--~~l~~--vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl------------~~p~~G~I~idG~~~~~~ 91 (382)
T TIGR03415 28 EEILDETGLV--VGVAN--ASLDIEEGEICVLMGLSGSGKSSLLRAVNGL------------NPVSRGSVLVKDGDGSID 91 (382)
T ss_pred HHHHHhhCCE--EEEEe--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEECCEecccc
Confidence 5678888776 46665 9999999999999999999999999999999 99999999999952
Q ss_pred eeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccc
Q 013511 179 AATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~ 236 (441)
........+. ....+.+.++...+|++.|+.+|+.++... ..+ +.+.....||+||+|
T Consensus 92 i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~Q 171 (382)
T TIGR03415 92 VANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQ 171 (382)
T ss_pred cccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 2111111111 112455555556789999999999876421 111 123445679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+.+ +|+|| +++||+..+..+.+.+.+++. .+||++||+ ++.+.+++|++.++ ++|++
T Consensus 172 RV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd-----l~e~~~l~DrI~vl---~~G~i 243 (382)
T TIGR03415 172 RVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD-----LDEALKIGNRIAIM---EGGRI 243 (382)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 8876 99999 999999999999999988753 399999999 88888899999999 89999
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
+..++..
T Consensus 244 v~~g~~~ 250 (382)
T TIGR03415 244 IQHGTPE 250 (382)
T ss_pred EEecCHH
Confidence 8877643
No 79
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.5e-25 Score=212.57 Aligned_cols=186 Identities=14% Similarity=0.162 Sum_probs=137.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~ 171 (441)
.|++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ .+ |++|+
T Consensus 4 ~~~l~~~~l~~~~~~~--~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~ 67 (253)
T PRK14242 4 PPKMEARGLSFFYGDF--QALHD--ISLEFEQNQVTALIGPSGCGKSTFLRCLNRM------------NDLIPGARVEGE 67 (253)
T ss_pred CcEEEEeeeEEEECCe--eeecc--eeEEEeCCCEEEEECCCCCCHHHHHHHHHhh------------cccCCCCCCceE
Confidence 4678899999999754 46765 9999999999999999999999999999998 54 58999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHHH-------------HH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELAQ-------------ML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~~-------------~~ 226 (441)
|.++|................+.+.++...+|. .|+.+|+.+.... +..+.+ ..
T Consensus 68 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (253)
T PRK14242 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHES 146 (253)
T ss_pred EEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC
Confidence 999997543210011111223444444445666 4999998764211 111111 11
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+||+||+.+ +|+|| +++||+..++.+.++|++++.. +||+++|+ +....+.||++.++
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~-----~~~~~~~~d~v~~l 221 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN-----MQQAARVSDVTAFF 221 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEec-----HHHHHHhCCEEEEE
Confidence 24589999998765 99999 9999999999999999988543 89999999 77777789999998
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
+.|.++..+.
T Consensus 222 ---~~G~i~~~g~ 231 (253)
T PRK14242 222 ---YMGKLIEVGP 231 (253)
T ss_pred ---ECCEEEEeCC
Confidence 7888877654
No 80
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=2.6e-25 Score=209.30 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=133.7
Q ss_pred chhHHHHHHHH-hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVL-EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~-~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
|++++|+++.| ++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~~~--~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 64 (222)
T PRK10908 1 MIRFEHVSKAYLGGR--QALQG--VTFHMRPGEMAFLTGHSGAGKSTLLKLICGI------------ERPSAGKIWFSGH 64 (222)
T ss_pred CEEEEeeEEEecCCC--eEEee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCE
Confidence 35567777777 332 46665 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccc
Q 013511 178 IAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAES 236 (441)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~ 236 (441)
.......... .....+.+.++...+++..|+.+|+.+.... +.++ .+.....||+||+|
T Consensus 65 ~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (222)
T PRK10908 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144 (222)
T ss_pred EcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHH
Confidence 5432111110 0112344444445667778999998764211 1111 12334569999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +......||++.++ ++|.++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHD-----IGLISRRSYRMLTL---SDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEc
Confidence 8775 99999 999999999999999998753 389999999 77666778999888 677654
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.90 E-value=2.2e-25 Score=210.52 Aligned_cols=182 Identities=15% Similarity=0.200 Sum_probs=134.7
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec-----cCCCCcccCC
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL-----DIGQGAITIP 175 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl-----dp~~G~i~~~ 175 (441)
+++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ + .|.+|+|.++
T Consensus 2 ~~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~~~~~~G~i~~~ 65 (227)
T cd03260 2 ELRDLNVYYGDK--HALKD--ISLDIPKGEITALIGPSGCGKSTLLRLLNRL------------NDLIPGAPDEGEVLLD 65 (227)
T ss_pred EEEEEEEEcCCc--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------cccccCCCCCeEEEEC
Confidence 345677777654 46665 9999999999999999999999999999999 8 8999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH---------HHH--HHHhcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA---------QML--ERQFNG 232 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~---------~~~--~~~ls~ 232 (441)
|................+.+.++...+| ..|+.+|+.+.... +.++. +.. ...||+
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 144 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSG 144 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCH
Confidence 9754221100011122344444444566 68999998764211 11111 122 367999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||+||+++ +|+|| +++||+..++.+.++|+++..+ +||+++|+ +....+.||++.++ ++|
T Consensus 145 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~G 216 (227)
T cd03260 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHN-----MQQAARVADRTAFL---LNG 216 (227)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEecc-----HHHHHHhCCEEEEE---eCC
Confidence 99998775 99999 9999999999999999998554 89999999 77777789999998 788
Q ss_pred CeeeCCh
Q 013511 301 GVVSRNS 307 (441)
Q Consensus 301 ~vv~~~~ 307 (441)
.++..++
T Consensus 217 ~i~~~g~ 223 (227)
T cd03260 217 RLVEFGP 223 (227)
T ss_pred EEEEecC
Confidence 8876543
No 82
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.90 E-value=6.7e-25 Score=223.16 Aligned_cols=185 Identities=18% Similarity=0.245 Sum_probs=150.1
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.++++++.|++|+|++. .|+++ +||++.+||+++++|.||||||||+|+|+|. ..|++|+|.++
T Consensus 5 ~~~ll~~~~i~K~FggV--~AL~~--v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv------------~~p~~G~I~~~ 68 (500)
T COG1129 5 TPPLLELRGISKSFGGV--KALDG--VSLTVRPGEVHALLGENGAGKSTLMKILSGV------------YPPDSGEILID 68 (500)
T ss_pred ccceeeeecceEEcCCc--eeecc--ceeEEeCceEEEEecCCCCCHHHHHHHHhCc------------ccCCCceEEEC
Confidence 35578899999999987 58876 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHHHH-----------H--------HHH-----HHHHHHHh
Q 013511 176 GCIAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------V--------KEL-----AQMLERQF 230 (441)
Q Consensus 176 G~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~--------~~l-----~~~~~~~l 230 (441)
|...... .+. ....|+...+|...+++++|+.||+.++... + .++ .+.....|
T Consensus 69 G~~~~~~--sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~L 146 (500)
T COG1129 69 GKPVAFS--SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDL 146 (500)
T ss_pred CEEccCC--CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhC
Confidence 9755321 121 2345676777777899999999999765321 1 111 22334457
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|.+++|.+.+ +|+|| |+.|+....+.+.+++++++.+ .||+++|. |++++++||++.|+
T Consensus 147 siaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHr-----l~Ei~~i~DritVl--- 218 (500)
T COG1129 147 SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHR-----LDEVFEIADRITVL--- 218 (500)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCc-----HHHHHHhcCEEEEE---
Confidence 7778776554 99999 9999999999999999999876 89999999 99999999999999
Q ss_pred CCCCeeeCC
Q 013511 298 KSGGVVSRN 306 (441)
Q Consensus 298 ~~g~vv~~~ 306 (441)
++|..+...
T Consensus 219 RDG~~v~~~ 227 (500)
T COG1129 219 RDGRVVGTR 227 (500)
T ss_pred eCCEEeeec
Confidence 888877543
No 83
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.90 E-value=3e-25 Score=208.28 Aligned_cols=178 Identities=18% Similarity=0.219 Sum_probs=131.0
Q ss_pred hHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 101 SYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 101 ~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++.|+++.|++.+ ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~--~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~ 67 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKG--VSLSIEKGEFVAIVGPSGSGKSTLLNILGGL------------DRPTSGEVRVDGTD 67 (218)
T ss_pred eEeeeEEEecCCCcceeEEee--eEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC------------cCCCceeEEECCEe
Confidence 3567777776421 246665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcC-C-CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccc
Q 013511 179 AATPIELPI-D-PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~ 236 (441)
......... . ....+.+.++...+|+.+|+.+|+.+.... +.+ ..+.....||+||+|
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 147 (218)
T cd03255 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQ 147 (218)
T ss_pred hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHH
Confidence 432111000 0 112344555555678888999998764321 111 123344679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +.... .||++.++ +.|.
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~-~~d~v~~l---~~G~ 217 (218)
T cd03255 148 RVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD-----PELAE-YADRIIEL---RDGK 217 (218)
T ss_pred HHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC-----HHHHh-hhcEEEEe---eCCc
Confidence 8765 99999 999999999999999998853 389999999 65554 78998888 6664
No 84
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-25 Score=210.56 Aligned_cols=187 Identities=14% Similarity=0.161 Sum_probs=136.7
Q ss_pred CCchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 97 TPMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
.+|+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~ 68 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHN--VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL------------DTPTSGDVIF 68 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEe--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEE
Confidence 35788889999886421 246765 9999999999999999999999999999999 9999999999
Q ss_pred CceeeeeeccCcC--CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhcc
Q 013511 175 PGCIAATPIELPI--DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNG 232 (441)
Q Consensus 175 ~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~ 232 (441)
+|........... .....+.+.++...+|+.+|+.+|+.+.... +.+ +.+.....||+
T Consensus 69 ~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSg 148 (233)
T PRK11629 69 NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSG 148 (233)
T ss_pred CCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCH
Confidence 9975432111100 0112344445555678888999998763210 111 12233456999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
||+||+++ +|+|| +++||+..++.+.+++++++ ..+||+++|+ ++.... ++++.++ +
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~-----~~~~~~-~~~~~~l---~ 219 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD-----LQLAKR-MSRQLEM---R 219 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHh-hCEEEEE---E
Confidence 99998765 99999 99999999999999999874 2489999999 655544 3577666 6
Q ss_pred CCCeeeCC
Q 013511 299 SGGVVSRN 306 (441)
Q Consensus 299 ~g~vv~~~ 306 (441)
+|.++...
T Consensus 220 ~G~i~~~~ 227 (233)
T PRK11629 220 DGRLTAEL 227 (233)
T ss_pred CCEEEEEe
Confidence 78776543
No 85
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5e-25 Score=213.34 Aligned_cols=205 Identities=14% Similarity=0.204 Sum_probs=145.9
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQ 169 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~ 169 (441)
...+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++ |++
T Consensus 17 ~~~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~ 80 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEK--RAVND--ISMDIEKHAVTALIGPSGCGKSTFLRSINRM------------NDLIPSARSE 80 (268)
T ss_pred CCCceEEEEEEEEEeCCc--eeeec--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------ccccCCCCCc
Confidence 344688899999999754 46765 9999999999999999999999999999998 54 689
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-------------HH
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-------------AQ 224 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-------------~~ 224 (441)
|+|.++|................+.+.++...+|+. |+.+|+.+.... +... .+
T Consensus 81 G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred eEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHh
Confidence 999999975432111000112234444444455654 888888754210 1111 11
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.....||+|++||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ +....+.|+++.
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~-----~~~~~~~~d~v~ 234 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN-----MQQALRVSDRTA 234 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeC-----HHHHHHhCCEEE
Confidence 2234599999988765 99999 999999999999999998854 389999999 777777899999
Q ss_pred EEEecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 293 VVKLQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
++ ++|.++..+.... ...+...+++||.+
T Consensus 235 ~l---~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 265 (268)
T PRK14248 235 FF---LNGDLVEYDQTEQIFTSPKQQKTEDYING 265 (268)
T ss_pred EE---ECCEEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 98 8888887765322 11223445566644
No 86
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.90 E-value=2.1e-25 Score=207.38 Aligned_cols=173 Identities=15% Similarity=0.155 Sum_probs=127.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. ..++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|.....
T Consensus 2 ~~~l~~~~~~~-~~~l~~--v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~ 66 (205)
T cd03226 2 IENISFSYKKG-TEILDD--LSLDLYAGEIIALTGKNGAGKTTLAKILAGL------------IKESSGSILLNGKPIKA 66 (205)
T ss_pred cccEEEEeCCc-Cceeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEhhh
Confidence 35667777541 136665 9999999999999999999999999999999 99999999999975421
Q ss_pred eccCcCCCCCCCCcccceEE-EecccCccCCHHHHHHH-------HHHH---------HHHHHHHhccCccceeee----
Q 013511 182 PIELPIDPVEGIPLEMPLVY-FFGHATPSNNVELYKVL-------VKEL---------AQMLERQFNGNAESRAAG---- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-~~g~~tv~en~~~~~~~-------~~~l---------~~~~~~~ls~g~~~r~~~---- 240 (441)
... ...+.+.++... .+...|+.+|+.++... +.++ .+.....||+||+||+.+
T Consensus 67 ---~~~--~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 141 (205)
T cd03226 67 ---KER--RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred ---HHh--hcceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHH
Confidence 111 123333333321 23356999998764321 1111 123345699999998775
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcC-C-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFK-A-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~-~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+|+|| +++||+..++.+.++++++. . .+||+++|+ +....+.||++.++ ++|.+
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~G~i 204 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHD-----YEFLAKVCDRVLLL---ANGAI 204 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 99999 99999999999999999884 2 389999999 77766778999888 67665
No 87
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.4e-25 Score=220.32 Aligned_cols=191 Identities=16% Similarity=0.205 Sum_probs=143.7
Q ss_pred CCCCchhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 95 DETPMVSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
...++++++|+++.|+... ..++++ +||++.+|++++|+|+||||||||+++|+|+ +.|.+|+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl------------~~p~~G~ 82 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNN--ISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL------------IKSKYGT 82 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCe
Confidence 3456889999999996421 247766 9999999999999999999999999999999 9999999
Q ss_pred ccCCceeeeeec----------------cCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---
Q 013511 172 ITIPGCIAATPI----------------ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE--- 221 (441)
Q Consensus 172 i~~~G~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~--- 221 (441)
|.++|....... ...++...++.++.+...+|. .|+.+|+.+.... +.+
T Consensus 83 I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~ 161 (320)
T PRK13631 83 IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLN 161 (320)
T ss_pred EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHH
Confidence 999997643210 001122234445554334565 4999998764321 111
Q ss_pred -------HHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHH
Q 013511 222 -------LAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSML 281 (441)
Q Consensus 222 -------l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l 281 (441)
+.+.....||+||+||+++ +|+|| +++||+..+..+.+++++++. .+||+++|+ +
T Consensus 162 ~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd-----~ 236 (320)
T PRK13631 162 KMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT-----M 236 (320)
T ss_pred HcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----H
Confidence 1122234599999998876 99999 999999999999999988743 399999999 7
Q ss_pred HHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 282 RDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 282 ~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+...+.||++.++ +.|.++..++.
T Consensus 237 ~~~~~~adri~vl---~~G~i~~~g~~ 260 (320)
T PRK13631 237 EHVLEVADEVIVM---DKGKILKTGTP 260 (320)
T ss_pred HHHHHhCCEEEEE---ECCEEEEeCCH
Confidence 7777789999999 89999887753
No 88
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.6e-25 Score=211.94 Aligned_cols=201 Identities=15% Similarity=0.178 Sum_probs=147.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~ 67 (255)
T PRK11300 4 PLLSVSGLMMRFGGL--LAVNN--VNLEVREQEIVSLIGPNGAGKTTVFNCLTGF------------YKPTGGTILLRGQ 67 (255)
T ss_pred ceEEEeeEEEEECCE--EEEEe--eeeEEcCCeEEEEECCCCCCHHHHHHHHhCC------------cCCCcceEEECCE
Confidence 478888999988754 46665 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------------------------HHH---------HH
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------------------------LVK---------EL 222 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------------------------~~~---------~l 222 (441)
......... ..+.++.+.++...+|+.+|+.+|+.+... .+. .+
T Consensus 68 ~~~~~~~~~-~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 146 (255)
T PRK11300 68 HIEGLPGHQ-IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146 (255)
T ss_pred ECCCCCHHH-HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh
Confidence 542211000 112334444455567888899998876321 011 11
Q ss_pred HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCC
Q 013511 223 AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNR 288 (441)
Q Consensus 223 ~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~ 288 (441)
.+.....||+||+||+++ +|+|| +++||+..++.+.++|.+++. .+||+++|+ +......|
T Consensus 147 ~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~-----~~~~~~~~ 221 (255)
T PRK11300 147 ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD-----MKLVMGIS 221 (255)
T ss_pred hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC-----HHHHHHhC
Confidence 123334689999988765 99999 999999999999999988742 389999999 77777789
Q ss_pred CCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcC
Q 013511 289 PNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 289 ~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g 324 (441)
|++.++ ++|+++..++.... .....+.+.|++
T Consensus 222 d~i~~l---~~g~i~~~~~~~~~-~~~~~~~~~~~~ 253 (255)
T PRK11300 222 DRIYVV---NQGTPLANGTPEEI-RNNPDVIKAYLG 253 (255)
T ss_pred CEEEEE---ECCeEEecCCHHHH-hhChHHHHHHcc
Confidence 999998 88988877653321 122234555544
No 89
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=3.7e-25 Score=206.86 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=130.5
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (213)
T cd03262 3 IKNLHKSFGDF--HVLKG--IDLTVKKGEVVVIIGPSGSGKSTLLRCINLL------------EEPDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEECCe--EeecC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCc
Confidence 45666667653 35655 9999999999999999999999999999999 99999999999975421
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCccceeee
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
...........+.+.++...+++..|+.+|+.++... +.+ +.+.....||+|++||+++
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHH
Confidence 0000011123455555555678888999998764210 111 1123335699999988765
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+|+|| ++++|+.+++.+.+++++++. .+||+++|+ +....+.||++.++ +.|.
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~-----~~~~~~~~d~i~~l---~~g~ 212 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHE-----MGFAREVADRVIFM---DDGR 212 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCc
Confidence 99999 999999999999999998753 489999999 77777789999888 5554
No 90
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.90 E-value=5e-25 Score=208.46 Aligned_cols=182 Identities=18% Similarity=0.162 Sum_probs=136.2
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 3 VSNLNVYYGQS--HILRG--VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL------------LPVKSGSIRLDGEDITK 66 (230)
T ss_pred EEeEEEEeCCe--EEecc--eeeEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEECCC
Confidence 45677777653 46655 9999999999999999999999999999999 99999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HHHH----------HHHHHHHhccCccceeee---
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VKEL----------AQMLERQFNGNAESRAAG--- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~~l----------~~~~~~~ls~g~~~r~~~--- 240 (441)
...... ....+.+.++...+|+..|+.+|+.++... ..++ .+.....||+|++||+++
T Consensus 67 ~~~~~~-~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 67 LPPHER-ARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred CCHHHH-HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 111110 122344444555678888999998764211 1111 122334589999988765
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|+|| ++++|+..++.+.+++.++.. .+||+++|+ +....+.|+++.++ +.|.++..++.
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~~~~d~v~~l---~~g~i~~~~~~ 216 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQY-----LDFARELADRYYVM---ERGRVVASGAG 216 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEECCH
Confidence 99999 999999999999999988743 489999999 77777789999998 88888876653
No 91
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.90 E-value=7e-25 Score=207.04 Aligned_cols=184 Identities=18% Similarity=0.173 Sum_probs=133.6
Q ss_pred chhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
|+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g 66 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDD--VSFSIKKGETLGLVGESGSGKSTLARAILGL------------LKPTSGSIIFDG 66 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecC--ceeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECC
Confidence 355678888886531 136655 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccC-cCCCCCCCCcccceE--EEecccCccCCHHHHHHH---------HH----HH----------HHHHHHHh
Q 013511 177 CIAATPIEL-PIDPVEGIPLEMPLV--YFFGHATPSNNVELYKVL---------VK----EL----------AQMLERQF 230 (441)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~~~~~~~--~~~g~~tv~en~~~~~~~---------~~----~l----------~~~~~~~l 230 (441)
......... ....+..+.+.++.. .+++.+|+.+|+.+.... .. ++ .+.....|
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (228)
T cd03257 67 KDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHEL 146 (228)
T ss_pred EEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhc
Confidence 754321100 011122344434333 466778999988653211 01 11 11223458
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
|+||+||+.+ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +......||++.++
T Consensus 147 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l-- 219 (228)
T cd03257 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHD-----LGVVAKIADRVAVM-- 219 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCeEEEE--
Confidence 9999998765 99999 999999999999999988753 489999999 77666689999888
Q ss_pred cCCCCeee
Q 013511 297 QKSGGVVS 304 (441)
Q Consensus 297 ~~~g~vv~ 304 (441)
++|.++.
T Consensus 220 -~~G~i~~ 226 (228)
T cd03257 220 -YAGKIVE 226 (228)
T ss_pred -eCCEEEe
Confidence 7787654
No 92
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.1e-25 Score=206.54 Aligned_cols=176 Identities=20% Similarity=0.235 Sum_probs=132.5
Q ss_pred HHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 102 YVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 102 ~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|...
T Consensus 3 ~~~l~~~~~~~~~~~~il~~--vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~ 68 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALED--ISLSVEEGEFVALVGPSGCGKSTLLRIIAGL------------ERPTSGEVLVDGEPV 68 (220)
T ss_pred EEEEEEEcCCCCcceEEEec--eeEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEC
Confidence 456677776411 146665 9999999999999999999999999999999 899999999999644
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccceee
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRAA 239 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~ 239 (441)
.. . ...+.+.++...+++..|+.+|+.+.... +.++ .+.....||+||+||+.
T Consensus 69 ~~-----~--~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~ 141 (220)
T cd03293 69 TG-----P--GPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVA 141 (220)
T ss_pred cc-----c--cCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHH
Confidence 21 1 12344444545678888999998764321 1111 12233569999999876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecC--CCCee
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK--SGGVV 303 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~--~g~vv 303 (441)
+ +|+|| +++||+..++.+.++++++. ..+||+++|+ +......||++.++ + +|.++
T Consensus 142 la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~~~G~i~ 213 (220)
T cd03293 142 LARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD-----IDEAVFLADRVVVL---SARPGRIV 213 (220)
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-----HHHHHHhCCEEEEE---ECCCCEEE
Confidence 5 99999 99999999999999998873 2489999999 76666778998888 6 67776
Q ss_pred eCC
Q 013511 304 SRN 306 (441)
Q Consensus 304 ~~~ 306 (441)
+..
T Consensus 214 ~~~ 216 (220)
T cd03293 214 AEV 216 (220)
T ss_pred EEE
Confidence 543
No 93
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.4e-25 Score=212.54 Aligned_cols=203 Identities=14% Similarity=0.207 Sum_probs=145.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~ 171 (441)
.+++++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++| .+|+
T Consensus 10 ~~~l~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl------------~~~~~~~~~~G~ 73 (258)
T PRK14268 10 QPQIKVENLNLWYGEK--QALKN--VSMQIPKNSVTALIGPSGCGKSTFIRCLNRM------------NDLIKNCRIEGK 73 (258)
T ss_pred ceeEEEeeeEEEeCCe--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCcccCCCcceE
Confidence 4578889999988754 46765 9999999999999999999999999999998 764 7999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHHH-------------HHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELAQ-------------MLE 227 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~~-------------~~~ 227 (441)
|.++|................+.+.++...+|. .|+.+|+.+.... +.++.+ ...
T Consensus 74 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 152 (258)
T PRK14268 74 VSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPA 152 (258)
T ss_pred EEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh
Confidence 999997543211001111223444444445666 7999999764321 111111 223
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++
T Consensus 153 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~-----~~~~~~~~d~i~~l- 226 (258)
T PRK14268 153 LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN-----MQQAARISDYTGFF- 226 (258)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECC-----HHHHHHhCCEEEEE-
Confidence 4699999988775 99999 999999999999999998754 389999999 77777789999999
Q ss_pred ecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 296 LQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 296 l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+.|.++..+.... ...+...+++|+.+
T Consensus 227 --~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK14268 227 --LMGELIEFGQTRQIFHNPREKSTEDYITG 255 (258)
T ss_pred --ECCEEEEeCCHHHHhcCCCCHHHHHHhhc
Confidence 8888887665321 11222345555544
No 94
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=7.1e-25 Score=200.11 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=125.5
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|++++|+++.| ++++ ++|++++|++++|+||||||||||+|+|+|+ ++|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~------~l~~--vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 62 (182)
T cd03215 3 PVLEVRGLSVKG------AVRD--VSFEVRAGEIVGIAGLVGNGQTELAEALFGL------------RPPASGEITLDGK 62 (182)
T ss_pred cEEEEeccEEEe------eecc--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCE
Confidence 467778887766 4544 9999999999999999999999999999999 9999999999996
Q ss_pred eeeeeccCcCCCCCCCCcccce---EEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEe
Q 013511 178 IAATPIELPIDPVEGIPLEMPL---VYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlD 244 (441)
........ ......+.+.++. ..++...|+.+|+.++.. ||+||+||+++ +|+|
T Consensus 63 ~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 63 PVTRRSPR-DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------LSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred ECCccCHH-HHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------cCHHHHHHHHHHHHHccCCCEEEEC
Confidence 54221100 0111233333333 346777899998876432 88888887654 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 245 T-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
| ++++|+..++.+.++++++.. .++|+++|+ +....+.|+++.++ ++|.
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~-----~~~~~~~~d~v~~l---~~G~ 181 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE-----LDELLGLCDRILVM---YEGR 181 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEe---cCCc
Confidence 9 999999999999999998743 499999999 77676778998888 6664
No 95
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=5.7e-25 Score=209.35 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=138.0
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|...
T Consensus 3 l~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~ 66 (239)
T cd03296 3 IEVRNVSKRFGDF--VALDD--VSLDIPSGELVALLGPSGSGKTTLLRLIAGL------------ERPDSGTILFGGEDA 66 (239)
T ss_pred EEEEeEEEEECCE--Eeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEC
Confidence 5667788888653 46665 9999999999999999999999999999999 999999999999754
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------HHH---------HHHHHHHHhccCcc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------VKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------~~~---------l~~~~~~~ls~g~~ 235 (441)
... .. ....+.+.++...+++..|+.+|+.+.... +.+ +.+.....||+||+
T Consensus 67 ~~~--~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 142 (239)
T cd03296 67 TDV--PV--QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQR 142 (239)
T ss_pred CcC--Cc--cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHH
Confidence 211 11 123344555555677788999998764210 111 11233456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|.
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~-----~~~~~~~~d~i~~l---~~G~ 214 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD-----QEEALEVADRVVVM---NKGR 214 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCe
Confidence 98775 99999 999999999999999998742 389999999 77666789999888 7888
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..++
T Consensus 215 i~~~~~ 220 (239)
T cd03296 215 IEQVGT 220 (239)
T ss_pred EEEecC
Confidence 887665
No 96
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-25 Score=215.81 Aligned_cols=187 Identities=19% Similarity=0.266 Sum_probs=138.8
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++.+ .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 2 ~~l~~~~l~~~~~~~~-~~l~~--vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 66 (277)
T PRK13652 2 HLIETRDLCYSYSGSK-EALNN--INFIAPRNSRIAVIGPNGAGKSTLFRHFNGI------------LKPTSGSVLIRGE 66 (277)
T ss_pred ceEEEEEEEEEeCCCC-ceeeE--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCE
Confidence 4677888988885322 36765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..............++.++.+...++ ..|+.+|+.+.... +.+ ..++....||+||+||
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr 145 (277)
T PRK13652 67 PITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR 145 (277)
T ss_pred ECCcCCHHHHHhheEEEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH
Confidence 54321111112223344444322334 57999998754321 111 1122345699999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+.+ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.||++.++ +.|.++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-----~~~~~~~~drv~~l---~~G~i~ 217 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ-----LDLVPEMADYIYVM---DKGRIV 217 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---ECCeEE
Confidence 765 99999 999999999999999988743 389999999 77777789999999 889888
Q ss_pred eCChH
Q 013511 304 SRNSK 308 (441)
Q Consensus 304 ~~~~~ 308 (441)
..++.
T Consensus 218 ~~g~~ 222 (277)
T PRK13652 218 AYGTV 222 (277)
T ss_pred EECCH
Confidence 77653
No 97
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=4.9e-25 Score=212.46 Aligned_cols=205 Identities=15% Similarity=0.176 Sum_probs=145.4
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQ 169 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~ 169 (441)
....++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +. |++
T Consensus 9 ~~~~~l~~~~l~~~~~~~--~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~p~~p~~ 72 (260)
T PRK10744 9 TAPSKIQVRNLNFYYGKF--HALKN--INLDIAKNQVTAFIGPSGCGKSTLLRTFNRM------------YELYPEQRAE 72 (260)
T ss_pred CCCceEEEEEEEEEeCCe--EEeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cccCCCCCcc
Confidence 345578888999999754 46765 9999999999999999999999999999998 65 579
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHHHH-------------H
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKELA-------------Q 224 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l~-------------~ 224 (441)
|+|.++|................+.+.++...+|+ .|+.+|+.+... .+.++. +
T Consensus 73 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 73 GEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred eEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHh
Confidence 99999997542110011111223444444445666 799999875421 111111 1
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.....||+||+||+++ +|+|| +++||+..++.+.+++++++.. +||+++|+ +......+|++.
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~-----~~~~~~~~d~i~ 226 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN-----MQQAARCSDYTA 226 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHHhCCEEE
Confidence 1223489999998775 99999 9999999999999999988544 89999999 776667899999
Q ss_pred EEEecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 293 VVKLQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
++ ++|.++..+.... .......+.+||.+
T Consensus 227 ~l---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 257 (260)
T PRK10744 227 FM---YLGELIEFGNTDTIFTKPAKKQTEDYITG 257 (260)
T ss_pred EE---ECCEEEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 98 8898887665322 11122445566654
No 98
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=3.4e-25 Score=206.69 Aligned_cols=173 Identities=16% Similarity=0.181 Sum_probs=130.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (210)
T cd03269 3 VENVTKRFGRV--TALDD--ISFSVEKGEIFGLLGPNGAGKTTTIRMILGI------------ILPDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEECCE--EEEee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCCchhH
Confidence 45666666543 35655 9999999999999999999999999999999 89999999999964321
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
. ....+.+.++...++...|+.+|+.++... +.+ ..+.....||+||+||+.+
T Consensus 67 ----~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 67 ----A--ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred ----H--HHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHH
Confidence 1 122344444444677778999998764321 111 1123345699999998765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+|+|| ++++|+..++.+.++++++.. .+|++++|+ +....+.||++.++ ++|.++.
T Consensus 141 ~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~g~i~~ 208 (210)
T cd03269 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ-----MELVEELCDRVLLL---NKGRAVL 208 (210)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCC-----HHHHHHhhhEEEEE---eCCEEEe
Confidence 99999 999999999999999988743 389999999 66666678998888 7787764
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.3e-25 Score=214.13 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=134.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 1 ml~~~~l~~~~~~~--~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 64 (271)
T PRK13638 1 MLATSDLWFRYQDE--PVLKG--LNLDFSLSPVTGLVGANGCGKSTLFMNLSGL------------LRPQKGAVLWQGKP 64 (271)
T ss_pred CeEEEEEEEEcCCc--ccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCccEEEECCEE
Confidence 46677888888754 46665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEE-EecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccce
Q 013511 179 AATPIELPIDPVEGIPLEMPLVY-FFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r 237 (441)
..............+.+.++... ++...++.+|+.++... +..+ .+.....||+|++||
T Consensus 65 i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr 144 (271)
T PRK13638 65 LDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKR 144 (271)
T ss_pred cccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHH
Confidence 42110000011122333333222 22345677777654211 1111 122335699999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|.++.
T Consensus 145 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~-----~~~~~~~~d~i~~l---~~G~i~~ 216 (271)
T PRK13638 145 VAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD-----IDLIYEISDAVYVL---RQGQILT 216 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 775 99999 999999999999999998753 389999999 77776789999998 8888887
Q ss_pred CChH
Q 013511 305 RNSK 308 (441)
Q Consensus 305 ~~~~ 308 (441)
.++.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 7653
No 100
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.4e-25 Score=218.92 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=139.5
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~--vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl------------~~p~~G~i~~~g 68 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDN--VSVEINQGEFIAIIGQTGSGKTTFIEHLNAL------------LLPDTGTIEWIF 68 (305)
T ss_pred EEEEEEEEEECCCCCccccceee--eEEEEeCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEEec
Confidence 55677777775432 136765 9999999999999999999999999999999 999999999988
Q ss_pred eeeeeec------------------------cCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH-
Q 013511 177 CIAATPI------------------------ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK- 220 (441)
Q Consensus 177 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~- 220 (441)
....... ........++.+|.+...++. .|+.+|+.+.... +.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~ 147 (305)
T PRK13651 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE-QTIEKDIIFGPVSMGVSKEEAKKRAAK 147 (305)
T ss_pred eecccccccccccccccccccccccccccchHHHHHhceEEEeeCccccccc-ccHHHHHHhhHHHcCCCHHHHHHHHHH
Confidence 6431100 001122235555655444554 6999999865321 11
Q ss_pred ---------HHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhh
Q 013511 221 ---------ELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLF 278 (441)
Q Consensus 221 ---------~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~ 278 (441)
.+.++....||+||+||+++ +|+|| +++||+.+++.+.+++++++. .+||+++|+
T Consensus 148 ~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd--- 224 (305)
T PRK13651 148 YIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD--- 224 (305)
T ss_pred HHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC---
Confidence 12234456799999998876 99999 999999999999999988753 399999999
Q ss_pred HHHHHHhcCCCCeEEEEecCCCCeeeCChHH
Q 013511 279 SMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 279 ~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~ 309 (441)
++.+.+.||++.++ ++|.++..++..
T Consensus 225 --~~~~~~~adrv~vl---~~G~i~~~g~~~ 250 (305)
T PRK13651 225 --LDNVLEWTKRTIFF---KDGKIIKDGDTY 250 (305)
T ss_pred --HHHHHHhCCEEEEE---ECCEEEEECCHH
Confidence 87777889999999 889988776533
No 101
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.2e-24 Score=208.78 Aligned_cols=187 Identities=18% Similarity=0.212 Sum_probs=140.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.| .+|+|
T Consensus 3 ~~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~~~~~~G~i 66 (253)
T PRK14267 3 FAIETVNLRVYYGSN--HVIKG--VDLKIPQNGVFALMGPSGCGKSTLLRTFNRL------------LELNEEARVEGEV 66 (253)
T ss_pred ceEEEEeEEEEeCCe--eeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCcccCCCCceEE
Confidence 367778888888754 46765 9999999999999999999999999999999 876 49999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-------------HHHHHH-------------HHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------LVKELA-------------QML 226 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------~~~~l~-------------~~~ 226 (441)
.++|................+.+.++...+|+..|+.+|+.+... .+.++. +..
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (253)
T PRK14267 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDY 146 (253)
T ss_pred EECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccC
Confidence 999975431000111112234444555567888899999876421 011111 122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+|++||+++ +|+|| +++||+..++.+.++|+++... +||+++|+ +....+.||++.++
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l 221 (253)
T PRK14267 147 PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHS-----PAQAARVSDYVAFL 221 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECC-----HHHHHhhCCEEEEE
Confidence 35699999988775 99999 9999999999999999988543 89999999 77777789999998
Q ss_pred EecCCCCeeeCChH
Q 013511 295 KLQKSGGVVSRNSK 308 (441)
Q Consensus 295 ~l~~~g~vv~~~~~ 308 (441)
++|.++..++.
T Consensus 222 ---~~G~i~~~~~~ 232 (253)
T PRK14267 222 ---YLGKLIEVGPT 232 (253)
T ss_pred ---ECCEEEEeCCH
Confidence 88888877653
No 102
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.1e-25 Score=216.82 Aligned_cols=185 Identities=19% Similarity=0.282 Sum_probs=136.8
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl------------~~p~~G~i~~~g 68 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDN--ISFELEEGSFVALVGHTGSGKSTLMQHFNAL------------LKPSSGTITIAG 68 (287)
T ss_pred EEEEEEEEEcCCCCCccccceee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECC
Confidence 55678888886321 246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeecc----CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH----------HHHHHHHhc
Q 013511 177 CIAATPIE----LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL----------AQMLERQFN 231 (441)
Q Consensus 177 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l----------~~~~~~~ls 231 (441)
........ .......++.++.+...++ ..|+.+|+.+.... +.++ .+.....||
T Consensus 69 ~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (287)
T PRK13641 69 YHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELS 147 (287)
T ss_pred EECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCC
Confidence 75421100 0111123344444322344 47999998764321 1111 122234599
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
+||+||+++ +|+|| +++||+.+++.+.+++++++. .+||+++|+ +..+.+.||++.++ +
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~-----~~~~~~~~d~v~~l---~ 219 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN-----MDDVAEYADDVLVL---E 219 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---E
Confidence 999998876 99999 999999999999999998853 399999999 88877889999999 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
.|.++..++
T Consensus 220 ~G~i~~~g~ 228 (287)
T PRK13641 220 HGKLIKHAS 228 (287)
T ss_pred CCEEEEeCC
Confidence 888887665
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-25 Score=216.83 Aligned_cols=185 Identities=19% Similarity=0.270 Sum_probs=138.2
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++.|+++.|+... ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~--vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl------------~~p~~G~i~~~g 68 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDN--VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL------------LKPTSGKIIIDG 68 (287)
T ss_pred EEEEEEEEECCCCCccccceeee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCccEEEECC
Confidence 45667777775421 246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeecc--CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH-----------HHHHHHHhcc
Q 013511 177 CIAATPIE--LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL-----------AQMLERQFNG 232 (441)
Q Consensus 177 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l-----------~~~~~~~ls~ 232 (441)
........ .......++.++.+...++ ..|+.+|+.++... +.++ .+.....||+
T Consensus 69 ~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSg 147 (287)
T PRK13637 69 VDITDKKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSG 147 (287)
T ss_pred EECCCcCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCH
Confidence 75532110 0112234455555433344 46999999865321 1111 1223456999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
||+||+++ +|+|| +++||+..+..+.++++++.. .+||++||+ +....+.||++.++ +
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-----~~~~~~~~drv~~l---~ 219 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-----MEDVAKLADRIIVM---N 219 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---E
Confidence 99998776 99999 999999999999999998853 399999999 88777789999999 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|.++..++
T Consensus 220 ~G~i~~~g~ 228 (287)
T PRK13637 220 KGKCELQGT 228 (287)
T ss_pred CCEEEEECC
Confidence 899887765
No 104
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.3e-25 Score=214.24 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=143.7
Q ss_pred eeeeCCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 91 DYTADETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 91 ~y~~~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+|.....+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|
T Consensus 3 ~~~~~~~~~l~i~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G 66 (265)
T PRK10575 3 EYTNHSDTTFALRNVSFRVPGR--TLLHP--LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH------------QPPSEG 66 (265)
T ss_pred cccCCCCceEEEeeEEEEECCE--EEEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCC
Confidence 5666667789999999999754 46765 9999999999999999999999999999999 899999
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHH---------HHHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKEL---------AQML 226 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l---------~~~~ 226 (441)
+|.++|........... ...+.+.++...+++.+|+.+|+.+... .+..+ .+..
T Consensus 67 ~i~~~g~~~~~~~~~~~--~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 144 (265)
T PRK10575 67 EILLDAQPLESWSSKAF--ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL 144 (265)
T ss_pred EEEECCEehhhCCHHHH--hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC
Confidence 99999975422111111 1233444443345677788888865310 01111 1222
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
...||+|++||+.+ +|+|| +++||+..++.+.++|+++. ..+||+++|+ +....+.||++.
T Consensus 145 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~-----~~~i~~~~d~i~ 219 (265)
T PRK10575 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD-----INMAARYCDYLV 219 (265)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEE
Confidence 34589999988765 99999 99999999999999998874 2489999999 777777899998
Q ss_pred EEEecCCCCeeeCCh
Q 013511 293 VVKLQKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l~~~g~vv~~~~ 307 (441)
++ ++|+++..++
T Consensus 220 ~l---~~G~i~~~~~ 231 (265)
T PRK10575 220 AL---RGGEMIAQGT 231 (265)
T ss_pred EE---ECCeEEEecC
Confidence 88 7888876654
No 105
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5.6e-25 Score=211.05 Aligned_cols=202 Identities=14% Similarity=0.180 Sum_probs=144.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc--C---CCCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD--I---GQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld--p---~~G~i~ 173 (441)
.+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++ | ++|+|.
T Consensus 4 ~l~~~nl~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~v~ 67 (252)
T PRK14256 4 KVKLEQLNVHFGKN--HAVKD--VSMDFPENSVTAIIGPSGCGKSTVLRSINRM------------HDLVPSARVTGKIL 67 (252)
T ss_pred EEEEEEEEEEeCCe--eEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------ccCCCCCCCceEEE
Confidence 35667888888653 46765 9999999999999999999999999999998 75 3 589999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHHH-------------HHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELAQ-------------MLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~~-------------~~~~ 228 (441)
++|................+.+.++...+|+..|+.+|+.+.... +..+.+ ....
T Consensus 68 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14256 68 LDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAM 147 (252)
T ss_pred ECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcC
Confidence 999754321111111123344445555678888999998753211 111111 1123
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+||+||+++ +|+|| ++++|+..++.+.++++++... +||+++|+ +....+.||++.++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l-- 220 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN-----MQQAARVSDYTAFF-- 220 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC-----HHHHHhhCCEEEEE--
Confidence 489999988765 99999 9999999999999999988544 88999999 77777789999998
Q ss_pred cCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 297 QKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 297 ~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
.+|.++..++... .......+++||.+
T Consensus 221 -~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14256 221 -YMGDLVECGETKKIFTTPEKKQTEDYITG 249 (252)
T ss_pred -ECCEEEEeCCHHHHHhCCCcHHHHHHHhh
Confidence 8888887765322 22233456777765
No 106
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.7e-25 Score=209.99 Aligned_cols=186 Identities=13% Similarity=0.154 Sum_probs=138.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~ 171 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++| .+|+
T Consensus 5 ~~~l~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~ 68 (254)
T PRK14273 5 EAIIETENLNLFYTDF--KALNN--INIKILKNSITALIGPSGCGKSTFLRTLNRM------------NDLVEGIKIEGN 68 (254)
T ss_pred CceEEEeeeEEEeCCc--eeecc--eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccCCcCCCCceE
Confidence 3478889999988764 36665 9999999999999999999999999999999 776 4899
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~ 226 (441)
|.++|..+..........+..+.+.++...+| ..|+.+|+.+.... +.... +..
T Consensus 69 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 147 (254)
T PRK14273 69 VIYEGKNIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTN 147 (254)
T ss_pred EEECCEecccccccHHHHhhceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCC
Confidence 99999754211000011123344444444455 48999999764321 11111 111
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+||+||+++ +|+|| +++||+..++.+.++|++++.. +||+++|+ +......+|++.++
T Consensus 148 ~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~-----~~~~~~~~d~i~~l 222 (254)
T PRK14273 148 ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHN-----MQQAGRISDRTAFF 222 (254)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 23589999988775 99999 9999999999999999998644 89999999 77776789999998
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 223 ---~~G~i~~~g~ 232 (254)
T PRK14273 223 ---LNGCIEEESS 232 (254)
T ss_pred ---ECCEEEEeCC
Confidence 8898887765
No 107
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3e-25 Score=220.30 Aligned_cols=190 Identities=16% Similarity=0.136 Sum_probs=145.0
Q ss_pred CCchhHHHHHHHHhhh--------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 97 TPMVSYVNVNAVLEGR--------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~--------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
.++++++|+++.|+.. ...++++ +||++.+|++++|+|+||||||||+++|+|+ +.|.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl------------~~p~ 68 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDG--VSFTLERGKTLAVVGESGCGKSTLARLLTMI------------ETPT 68 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEee--eEEEECCCCEEEEECCCCCcHHHHHHHHHcC------------CCCC
Confidence 3577888888888531 1246765 9999999999999999999999999999999 8999
Q ss_pred CCcccCCceeeeeeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHH----------HH
Q 013511 169 QGAITIPGCIAATPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKE----------LA 223 (441)
Q Consensus 169 ~G~i~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~----------l~ 223 (441)
+|+|.++|..+...... .+....++.+|.+...+++.+++.+++..... .+.+ ..
T Consensus 69 ~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~ 148 (327)
T PRK11308 69 GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHY 148 (327)
T ss_pred CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHh
Confidence 99999999765332111 12233455566655567788888877653211 1111 12
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
+.+...||+||+||+++ ||+|| +++||...+..+++++++++. .+||++||| +..+.+.||
T Consensus 149 ~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-----l~~~~~~ad 223 (327)
T PRK11308 149 DRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD-----LSVVEHIAD 223 (327)
T ss_pred cCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCC
Confidence 33445799999999876 99999 999999999999999988753 399999999 887777899
Q ss_pred CeEEEEecCCCCeeeCChH
Q 013511 290 NVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 290 ~v~vl~l~~~g~vv~~~~~ 308 (441)
++.+| ..|.+++.++.
T Consensus 224 rv~vm---~~G~ive~g~~ 239 (327)
T PRK11308 224 EVMVM---YLGRCVEKGTK 239 (327)
T ss_pred EEEEE---ECCEEEEECCH
Confidence 99999 89999988763
No 108
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.90 E-value=8.5e-25 Score=208.59 Aligned_cols=186 Identities=17% Similarity=0.202 Sum_probs=137.7
Q ss_pred chhHHHHHHHHh-hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLE-GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~-~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
|+++.|+++.|+ +. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~~~--~il~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~ 64 (243)
T TIGR02315 1 MLEVENLSKVYPNGK--QALKN--INLNINPGEFVAIIGPSGAGKSTLLRCINRL------------VEPSSGSILLEGT 64 (243)
T ss_pred CeEEEeeeeecCCCc--ceeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCccEEEECCE
Confidence 456788888887 43 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcC-CCCCCCCcccceEEEecccCccCCHHHHH---------------H----HHHHH---------HHHHHH
Q 013511 178 IAATPIELPI-DPVEGIPLEMPLVYFFGHATPSNNVELYK---------------V----LVKEL---------AQMLER 228 (441)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~---------------~----~~~~l---------~~~~~~ 228 (441)
.......... .....+.+.++...+++.+|+.+|+.+.. . .+.++ .+....
T Consensus 65 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred EhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 5422111000 01223444444446777789999886421 0 01111 122334
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.||+||+||+++ +|+|| ++++|+..++.+.++|+++. ..+||+++|+ +....+.||++.++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~-----~~~~~~~~d~v~~l 219 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKKYADRIVGL 219 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCeEEEE
Confidence 699999998776 99999 99999999999999998874 2489999999 77776789999888
Q ss_pred EecCCCCeeeCChH
Q 013511 295 KLQKSGGVVSRNSK 308 (441)
Q Consensus 295 ~l~~~g~vv~~~~~ 308 (441)
++|.++..+..
T Consensus 220 ---~~G~i~~~~~~ 230 (243)
T TIGR02315 220 ---KAGEIVFDGAP 230 (243)
T ss_pred ---ECCEEEecCCH
Confidence 78888876653
No 109
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-24 Score=208.80 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=138.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.| .+|+|
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~~~~~~G~i 65 (250)
T PRK14247 2 NKIEIRDLKVSFGQV--EVLDG--VNLEIPDNTITALMGPSGSGKSTLLRVFNRL------------IELYPEARVSGEV 65 (250)
T ss_pred ceEEEEeeEEEECCe--eeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCCCCceEE
Confidence 467788888888764 36665 9999999999999999999999999999999 763 69999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------HHHHH-------------HHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------VKELA-------------QML 226 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------~~~l~-------------~~~ 226 (441)
.++|..+....... .+..+.+.++...+++..|+.+|+.+.... +.++. +..
T Consensus 66 ~~~g~~i~~~~~~~--~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 66 YLDGQDIFKMDVIE--LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred EECCEECCcCCHHH--HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99997543211111 123344444544567889999999764311 11111 122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+|++||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +......||++.++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l 218 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF-----PQQAARISDYVAFL 218 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE
Confidence 34689999988765 99999 999999999999999998754 389999999 77766788999998
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
+.|.++..++
T Consensus 219 ---~~G~i~~~g~ 228 (250)
T PRK14247 219 ---YKGQIVEWGP 228 (250)
T ss_pred ---ECCeEEEECC
Confidence 8888877655
No 110
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.2e-24 Score=193.30 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=143.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|++|.|+++ .++++ +|+++.+|.++.++||||||||||+.+++.+ +..++|+|+++|..
T Consensus 1 MI~i~nv~K~y~~~--~vl~~--isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL------------~~~d~G~i~i~g~~ 64 (252)
T COG4604 1 MITIENVSKSYGTK--VVLDD--VSLDIPKGGITSIIGPNGAGKSTLLSMMSRL------------LKKDSGEITIDGLE 64 (252)
T ss_pred CeeehhhhHhhCCE--Eeecc--ceeeecCCceeEEECCCCccHHHHHHHHHHh------------ccccCceEEEeeee
Confidence 67889999999997 46655 9999999999999999999999999999999 99999999999998
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH--------------------H--HHHHHHHHHHHHhccCccc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK--------------------V--LVKELAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~--------------------~--~~~~l~~~~~~~ls~g~~~ 236 (441)
......+.+..+..+- -+...+--.+||+|-+.|++ . .+..+.+++..+|||||+|
T Consensus 65 ~~~~~s~~LAk~lSIL--kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQ 142 (252)
T COG4604 65 LTSTPSKELAKKLSIL--KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQ 142 (252)
T ss_pred cccCChHHHHHHHHHH--HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhh
Confidence 7655443322211111 11112222334444333321 0 1356778899999999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+-+ +++|| .+.||-...-.++++++++.. .+|+++-|| ++.+..++|.+.-+ |+|.+
T Consensus 143 RAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHD-----INfAS~YsD~IVAl---K~G~v 214 (252)
T COG4604 143 RAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD-----INFASCYSDHIVAL---KNGKV 214 (252)
T ss_pred hhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEec-----ccHHHhhhhheeee---cCCEE
Confidence 9765 89999 899998766666666655432 255555688 66666678888888 99999
Q ss_pred eeCChHHHHHHHHHHHHHHhcC
Q 013511 303 VSRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~yf~g 324 (441)
+..+++.. ..+.+.+++.|.-
T Consensus 215 v~~G~~~e-ii~~~~L~eiydm 235 (252)
T COG4604 215 VKQGSPDE-IIQPEILSEIYDM 235 (252)
T ss_pred EecCCHHH-hcCHHHHHHHhcC
Confidence 99887543 3455667777754
No 111
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.90 E-value=4.9e-25 Score=211.81 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=137.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 10 ~~~l~i~~l~~~~~~~--~il~~--isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl------------~~p~~G~i~~~g 73 (257)
T PRK11247 10 GTPLLLNAVSKRYGER--TVLNQ--LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL------------ETPSAGELLAGT 73 (257)
T ss_pred CCcEEEEEEEEEECCc--ceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECC
Confidence 3567888999888764 46665 9999999999999999999999999999999 999999999988
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHHHHhccCccceeee--
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLERQFNGNAESRAAG-- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~~~ls~g~~~r~~~-- 240 (441)
.... .. ...+.+.++...+++..|+.+|+.+... .+.+ ..+.....||+||+||+.+
T Consensus 74 ~~~~-----~~--~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~lar 146 (257)
T PRK11247 74 APLA-----EA--REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALAR 146 (257)
T ss_pred EEHH-----Hh--hCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 5421 11 1223444444467788899999875321 1111 1233446799999998775
Q ss_pred --------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 241 --------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 241 --------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|+|| +++||+..++.+.++|+++. ..+||+++|+ +....+.||++.++ ++|.++..+
T Consensus 147 aL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd-----~~~~~~~~d~i~~l---~~G~i~~~~ 216 (257)
T PRK11247 147 ALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD-----VSEAVAMADRVLLI---EEGKIGLDL 216 (257)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEeec
Confidence 99999 99999999999999998863 2489999999 77666778999888 777776543
No 112
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.90 E-value=5.9e-25 Score=207.71 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=136.0
Q ss_pred CCchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 97 TPMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
.+|+++.|+++.|++.+ ..++++ +||++.+|++++|+||||||||||+++|+|+ ++|++|+|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl------------~~p~~G~i~~ 69 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTG--VELVVKRGETIALIGESGSGKSTLLAILAGL------------DDGSSGEVSL 69 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEec--cEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCeeEEE
Confidence 35788899999987532 136665 9999999999999999999999999999999 9999999999
Q ss_pred CceeeeeeccCcC--CCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHH---------HHHHHHHHhcc
Q 013511 175 PGCIAATPIELPI--DPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKE---------LAQMLERQFNG 232 (441)
Q Consensus 175 ~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~---------l~~~~~~~ls~ 232 (441)
+|........... .....+.+.++...+++..|+.+|+.+... .+.+ ..+.....||+
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 149 (228)
T PRK10584 70 VGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSG 149 (228)
T ss_pred CCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCH
Confidence 9975432111000 011234444455567788899999875321 0111 12234456999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|++||+.+ +|+|| +++||+..++.+.++++++. ..+||+++|+ +... ..+|++.++ +
T Consensus 150 Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~-~~~d~i~~l---~ 220 (228)
T PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD-----LQLA-ARCDRRLRL---V 220 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHH-HhCCEEEEE---E
Confidence 99988765 99999 99999999999999998874 2389999999 5544 348998888 7
Q ss_pred CCCeee
Q 013511 299 SGGVVS 304 (441)
Q Consensus 299 ~g~vv~ 304 (441)
+|.+++
T Consensus 221 ~g~i~~ 226 (228)
T PRK10584 221 NGQLQE 226 (228)
T ss_pred CCEEEe
Confidence 777654
No 113
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.90 E-value=6.3e-25 Score=212.51 Aligned_cols=188 Identities=16% Similarity=0.139 Sum_probs=135.7
Q ss_pred CchhHHHHHHHHhhh-------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 98 PMVSYVNVNAVLEGR-------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~-------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+|+++.|+++.|+.. ...++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl------------~~p~~G 68 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKP--LSFTLREGQTLAIIGENGSGKSTLAKMLAGM------------IEPTSG 68 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeee--eeEEecCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCCC
Confidence 578889999988631 1246765 9999999999999999999999999999999 999999
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHHH----------HHHHHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKEL----------AQMLER 228 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l----------~~~~~~ 228 (441)
+|.++|...............++.++.+..++++..|+.+|+.+... .+.++ .+....
T Consensus 69 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 148 (267)
T PRK15112 69 ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPH 148 (267)
T ss_pred EEEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCch
Confidence 99999975421110011111233333332234566677766654211 01111 122235
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.||+||+||+++ +|+|| +++||+..++.+.++|+++. ..+||+++|+ +......||++.++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~-----~~~~~~~~d~i~~l 223 (267)
T PRK15112 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH-----LGMMKHISDQVLVM 223 (267)
T ss_pred hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC-----HHHHHHhcCEEEEE
Confidence 699999998776 99999 99999999999999999874 2389999999 77777779999988
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 224 ---~~G~i~~~~~ 233 (267)
T PRK15112 224 ---HQGEVVERGS 233 (267)
T ss_pred ---ECCEEEecCC
Confidence 7888877654
No 114
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8e-25 Score=209.92 Aligned_cols=186 Identities=16% Similarity=0.192 Sum_probs=137.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc--C---CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD--I---GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld--p---~~G~i 172 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ .+ | .+|+|
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~p~~~~~G~i 67 (252)
T PRK14239 4 PILQVSDLSVYYNKK--KALNS--VSLDFYPNEITALIGPSGSGKSTLLRSINRM------------NDLNPEVTITGSI 67 (252)
T ss_pred ceEEEEeeEEEECCe--eeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------cccCCCCCccceE
Confidence 477888999888754 36655 9999999999999999999999999999997 54 5 48999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------H----HHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------V----KELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~----~~l~-------------~~~~ 227 (441)
.++|.............+..+.+.++...+|. .|+.+|+.+.... . ..+. +...
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (252)
T PRK14239 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA 146 (252)
T ss_pred EECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc
Confidence 99997542211111111223444444445665 7999998764211 1 1111 1222
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+++ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +....+.||++.++
T Consensus 147 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l- 220 (252)
T PRK14239 147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS-----MQQASRISDRTGFF- 220 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECC-----HHHHHHhCCEEEEE-
Confidence 4589999988765 99999 999999999999999998854 389999999 77777789999999
Q ss_pred ecCCCCeeeCChH
Q 013511 296 LQKSGGVVSRNSK 308 (441)
Q Consensus 296 l~~~g~vv~~~~~ 308 (441)
++|+++..++.
T Consensus 221 --~~G~i~~~g~~ 231 (252)
T PRK14239 221 --LDGDLIEYNDT 231 (252)
T ss_pred --ECCEEEEeCCH
Confidence 88888877653
No 115
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.8e-25 Score=215.34 Aligned_cols=185 Identities=21% Similarity=0.269 Sum_probs=138.1
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
|+++.|+++.|++.. ..++++ +||++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 69 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLND--VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL------------LEAESGQIIIDGD 69 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCE
Confidence 677788888886421 236765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~r 237 (441)
..............++.++.+. .++...|+.+|+.+.... +. .+.+.....||+||+||
T Consensus 70 ~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qr 148 (279)
T PRK13650 70 LLTEENVWDIRHKIGMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQR 148 (279)
T ss_pred ECCcCcHHHHHhhceEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 5532111112223344444432 245567999999765321 11 12233345699999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +... ..||++.++ ++|.++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~-----~~~~-~~~dri~~l---~~G~i~ 219 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD-----LDEV-ALSDRVLVM---KNGQVE 219 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHH-HhCCEEEEE---ECCEEE
Confidence 775 99999 999999999999999988743 399999999 6666 469999888 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 220 ~~g~ 223 (279)
T PRK13650 220 STST 223 (279)
T ss_pred EECC
Confidence 7665
No 116
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.89 E-value=6.8e-25 Score=208.31 Aligned_cols=182 Identities=18% Similarity=0.212 Sum_probs=136.0
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~ 65 (236)
T cd03219 2 EVRGLTKRFGGL--VALDD--VSFSVRPGEIHGLIGPNGAGKTTLFNLISGF------------LRPTSGSVLFDGEDIT 65 (236)
T ss_pred eeeeeEEEECCE--EEecC--ceEEecCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCceEEECCEECC
Confidence 346777777653 36665 9999999999999999999999999999999 8999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------------HHHH---------HHHHHHHh
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------------VKEL---------AQMLERQF 230 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------------~~~l---------~~~~~~~l 230 (441)
....... .+..+.+.++...+|+.+|+.+|+.+.... +.++ .+.....|
T Consensus 66 ~~~~~~~-~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (236)
T cd03219 66 GLPPHEI-ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGEL 144 (236)
T ss_pred CCCHHHH-HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhC
Confidence 2110000 122344545555678889999998764321 1111 12233569
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|+||+||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +......||++.++
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~-----~~~~~~~~d~i~~l--- 216 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD-----MDVVMSLADRVTVL--- 216 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhCCEEEEE---
Confidence 9999998765 99999 99999999999999998875 2489999999 77777789999998
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|.++..++
T Consensus 217 ~~G~i~~~~~ 226 (236)
T cd03219 217 DQGRVIAEGT 226 (236)
T ss_pred eCCEEEeecC
Confidence 8888876554
No 117
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=7.1e-25 Score=210.24 Aligned_cols=202 Identities=12% Similarity=0.147 Sum_probs=144.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ .+| .+|+|
T Consensus 3 ~~l~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~~~~~~G~i 66 (251)
T PRK14270 3 IKMESKNLNLWYGEK--QALND--INLPIYENKITALIGPSGCGKSTFLRCLNRM------------NDLISNVKIEGEV 66 (251)
T ss_pred cEEEEEEeEEEECCe--eeeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------cCcccCCCCccEE
Confidence 577888998888754 36665 9999999999999999999999999999998 765 78999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~~ 227 (441)
.++|................+.+.++...+|+ .|+.+|+.+.... +.++. +...
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14270 67 LLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSA 145 (251)
T ss_pred EECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc
Confidence 99997543211011111223444444445666 7999998764321 01111 1223
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+++ +|+|| +++||+..+..+.++++++.. .+||+++|+ +....+.|+++.++
T Consensus 146 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~-----~~~~~~~~d~v~~l- 219 (251)
T PRK14270 146 LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN-----MQQASRVSDYTAFF- 219 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcC-----HHHHHHhcCEEEEE-
Confidence 4589999988765 99999 999999999999999998753 488999999 77766789999999
Q ss_pred ecCCCCeeeCChHHHH--HHHHHHHHHHhcC
Q 013511 296 LQKSGGVVSRNSKVRQ--KARSYRIREYFYG 324 (441)
Q Consensus 296 l~~~g~vv~~~~~~~~--~~r~~~~~~yf~g 324 (441)
++|+++..++.... ......+++||..
T Consensus 220 --~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14270 220 --LMGDLIEFNKTEKIFLEPQKKETEDYISG 248 (251)
T ss_pred --ECCeEEEeCCHHHHhcCCCChHHHHhhcc
Confidence 88998877653322 1122445566543
No 118
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.89 E-value=1.1e-24 Score=206.97 Aligned_cols=181 Identities=15% Similarity=0.194 Sum_probs=135.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~ 64 (236)
T TIGR03864 1 ALEVAGLSFAYGAR--RALDD--VSFTVRPGEFVALLGPNGAGKSTLFSLLTRL------------YVAQEGQISVAGHD 64 (236)
T ss_pred CEEEEeeEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEE
Confidence 34566777777653 36665 9999999999999999999999999999999 89999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~ 238 (441)
...... .....+.+.++...++...|+.+|+.++... +.++ .+.....||+|++||+
T Consensus 65 i~~~~~---~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl 141 (236)
T TIGR03864 65 LRRAPR---AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRV 141 (236)
T ss_pred cccCCh---hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 432111 1112344444444566778999998764321 1111 1223456999999987
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| ++++|+..++.+.++++++. ..+||+++|+ +.... .||++.++ ++|.++.
T Consensus 142 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~-~~d~i~~l---~~G~i~~ 212 (236)
T TIGR03864 142 EIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL-----VDEIE-ADDRLVVL---HRGRVLA 212 (236)
T ss_pred HHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-----hhhHh-hCCEEEEE---eCCeEEE
Confidence 65 99999 99999999999999998874 2489999999 66664 48999998 8888887
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 213 ~~~ 215 (236)
T TIGR03864 213 DGA 215 (236)
T ss_pred eCC
Confidence 665
No 119
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=3.6e-25 Score=216.25 Aligned_cols=186 Identities=18% Similarity=0.294 Sum_probs=138.8
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl------------~~p~~G~i~~~g 68 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHD--VNTEFEQGKYYAIVGQTGSGKSTLIQNINAL------------LKPTTGTVTVDD 68 (286)
T ss_pred EEEEEEEEEECCCCccccCceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECC
Confidence 45667777775321 246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeecc----CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH----------HHHHHHHHhc
Q 013511 177 CIAATPIE----LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE----------LAQMLERQFN 231 (441)
Q Consensus 177 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~----------l~~~~~~~ls 231 (441)
........ ...+...++.++.+...+|. .|+.+|+.+.... +.+ ..+.....||
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (286)
T PRK13646 69 ITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMS 147 (286)
T ss_pred EECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 75532111 01222345555654334555 4899999764321 111 1122345699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ +|+|| ++++|+.++..+.+++++++ ..+||+++|+ ++...+.||++.++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~-----~~~~~~~~dri~~l--- 219 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-----MNEVARYADEVIVM--- 219 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHHhCCEEEEE---
Confidence 999998775 99999 99999999999999999874 2499999999 77777789999999
Q ss_pred CCCCeeeCChH
Q 013511 298 KSGGVVSRNSK 308 (441)
Q Consensus 298 ~~g~vv~~~~~ 308 (441)
+.|.++..++.
T Consensus 220 ~~G~i~~~g~~ 230 (286)
T PRK13646 220 KEGSIVSQTSP 230 (286)
T ss_pred ECCEEEEECCH
Confidence 88988877653
No 120
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.89 E-value=5.7e-25 Score=211.64 Aligned_cols=203 Identities=13% Similarity=0.176 Sum_probs=147.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++++|+++.|+++ .++++ ++|++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~ 67 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKG--VSLQANAGDVISIIGSSGSGKSTFLRCINFL------------EKPSEGSIVVNGQ 67 (257)
T ss_pred ccEEEeeeEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCE
Confidence 457788999998764 36665 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeec---------cC-c-CCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHHHH----------H
Q 013511 178 IAATPI---------EL-P-IDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKELA----------Q 224 (441)
Q Consensus 178 ~~~~~~---------~~-~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l~----------~ 224 (441)
...... .. . ......+.+.++...+++.+|+.+|+.+... .+.++. +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 68 TINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred EcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 542100 00 0 0112334555555567888999999875321 111111 2
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
.....||+|++||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ +......||++
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~-----~~~~~~~~d~i 222 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE-----MGFARHVSSHV 222 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEE
Confidence 2235689999988765 99999 999999999999999998853 389999999 77666679999
Q ss_pred EEEEecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 292 DVVKLQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
.++ +.|+++..++... .......++.|+.|
T Consensus 223 ~~l---~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 254 (257)
T PRK10619 223 IFL---HQGKIEEEGAPEQLFGNPQSPRLQQFLKG 254 (257)
T ss_pred EEE---ECCEEEEeCCHHHhhhCccCHHHHHHhhc
Confidence 988 7898887765322 11112344566655
No 121
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.2e-24 Score=205.39 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=135.8
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. ..++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~~-~~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~ 66 (241)
T cd03256 2 EVENLSKTYPNG-KKALKD--VSLSINPGEFVALIGPSGAGKSTLLRCLNGL------------VEPTSGSVLIDGTDIN 66 (241)
T ss_pred EEeeEEEecCCc-cEEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCCceEEECCEecc
Confidence 346777777651 136665 9999999999999999999999999999999 8999999999997543
Q ss_pred eeccC-cCCCCCCCCcccceEEEecccCccCCHHHHHH-------------------HHHHHH---------HHHHHHhc
Q 013511 181 TPIEL-PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------------LVKELA---------QMLERQFN 231 (441)
Q Consensus 181 ~~~~~-~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------------~~~~l~---------~~~~~~ls 231 (441)
..... .......+.+.++...+|+..|+.+|+.+... .+.++. +.....||
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 146 (241)
T cd03256 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLS 146 (241)
T ss_pred ccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCC
Confidence 21100 00112234455555567788899999865210 011111 12234599
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +......||++.++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~-----~~~~~~~~d~v~~l--- 218 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQ-----VDLAREYADRIVGL--- 218 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---
Confidence 999998775 99999 99999999999999999874 2489999999 77777789999999
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|.++..++
T Consensus 219 ~~G~i~~~~~ 228 (241)
T cd03256 219 KDGRIVFDGP 228 (241)
T ss_pred ECCEEEeecC
Confidence 7888887665
No 122
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.7e-25 Score=217.49 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=137.8
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++++|+++.|+... ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g 68 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYD--VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL------------LQPTSGTVTIGE 68 (290)
T ss_pred EEEEEEEEEECCCCcccccceee--EEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECC
Confidence 45667777775321 246765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeec-c---CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH----------HHHHHHHHhc
Q 013511 177 CIAATPI-E---LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE----------LAQMLERQFN 231 (441)
Q Consensus 177 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~----------l~~~~~~~ls 231 (441)
....... . .......++.++.+...++. .|+.+|+.+.... +.+ +.+.....||
T Consensus 69 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 147 (290)
T PRK13634 69 RVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELS 147 (290)
T ss_pred EECccccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCC
Confidence 7542110 0 01122234555554334554 6999999765321 111 1122345699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ +|+|| +++||+..+..+.++++++.. .+||+++|+ +....+.||++.++
T Consensus 148 gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd-----~~~~~~~~drv~~l--- 219 (290)
T PRK13634 148 GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS-----MEDAARYADQIVVM--- 219 (290)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---
Confidence 999998776 99999 999999999999999998843 389999999 88777789999999
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|+++..++
T Consensus 220 ~~G~i~~~g~ 229 (290)
T PRK13634 220 HKGTVFLQGT 229 (290)
T ss_pred ECCEEEEECC
Confidence 8898887665
No 123
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.5e-25 Score=209.34 Aligned_cols=185 Identities=16% Similarity=0.205 Sum_probs=137.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ..|.+|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~ 65 (242)
T PRK11124 2 SIQLNGINCFYGAH--QALFD--ITLDCPQGETLVLLGPSGAGKSSLLRVLNLL------------EMPRSGTLNIAGNH 65 (242)
T ss_pred EEEEEeeEEEECCe--eeEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEe
Confidence 45667888888654 46665 9999999999999999999999999999999 89999999999975
Q ss_pred eeee--cc-Cc-CCCCCCCCcccceEEEecccCccCCHHHHHH------------HHH---------HHHHHHHHHhccC
Q 013511 179 AATP--IE-LP-IDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVK---------ELAQMLERQFNGN 233 (441)
Q Consensus 179 ~~~~--~~-~~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~---------~l~~~~~~~ls~g 233 (441)
.... .. .. ......+.+.++...+|..+|+.+|+.+... .+. .+.+.....||+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 145 (242)
T PRK11124 66 FDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGG 145 (242)
T ss_pred cccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHH
Confidence 4100 00 00 0112234555555567888899999864210 011 1123334569999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
++||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +......+|++.++ ++|
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~-----~~~~~~~~d~i~~l---~~g 217 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE-----VEVARKTASRVVYM---ENG 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCEEEEE---ECC
Confidence 9988765 99999 999999999999999998753 489999999 66666678999888 788
Q ss_pred CeeeCCh
Q 013511 301 GVVSRNS 307 (441)
Q Consensus 301 ~vv~~~~ 307 (441)
.++..++
T Consensus 218 ~i~~~~~ 224 (242)
T PRK11124 218 HIVEQGD 224 (242)
T ss_pred EEEEeCC
Confidence 8877665
No 124
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.2e-25 Score=221.56 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=139.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++ |+++.|++. . . + +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 1 ~l~~-~l~k~~~~~--~-~-~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~~~g~~ 61 (352)
T PRK11144 1 MLEL-NFKQQLGDL--C-L-T--VNLTLPAQGITAIFGRSGAGKTSLINAISGL------------TRPQKGRIVLNGRV 61 (352)
T ss_pred CeEE-EEEEEeCCE--E-E-E--EEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEE
Confidence 3444 677777653 1 2 3 8999999999999999999999999999999 99999999999975
Q ss_pred eeeeccC--cCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHH---------HHHHHHHHHhccCccceeee--
Q 013511 179 AATPIEL--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVK---------ELAQMLERQFNGNAESRAAG-- 240 (441)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~---------~l~~~~~~~ls~g~~~r~~~-- 240 (441)
....... ....+..+.+.++...+|+++|+.+|+.+... .+. .+.++....||+||+||+++
T Consensus 62 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 62 LFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred ccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 4321100 01112345555555678999999999986532 111 12234446699999999876
Q ss_pred --------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 --------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 --------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|+|| +++||+..++.+.++|+++.. .++|++||+ +..+.+.||++.++ ++|.++..++.
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd-----~~~~~~~~d~i~~l---~~G~i~~~g~~ 213 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS-----LDEILRLADRVVVL---EQGKVKAFGPL 213 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecC-----HHHHHHhCCEEEEE---eCCEEEEecCH
Confidence 99999 999999999999999988743 389999999 77777889999999 88998877653
No 125
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.3e-24 Score=209.18 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=138.2
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i~ 173 (441)
++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.| .+|+|.
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl------------~~~~~~~~~~G~I~ 67 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVED--VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM------------HEVIPGARVEGEVL 67 (258)
T ss_pred cEEEeeEEEEECCE--eeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------CCcccCCCcceEEE
Confidence 56778888888754 46765 9999999999999999999999999999998 764 699999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QMLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~~~ 228 (441)
++|................+.+.++...+|+..|+.+|+.+.... +.++. +....
T Consensus 68 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (258)
T PRK14241 68 LDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGG 147 (258)
T ss_pred ECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 999754211001111123345555555678888999998764211 11111 11224
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+|++||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++.-
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~-----~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 148 GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN-----MQQAARVSDQTAFFNL 222 (258)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEEec
Confidence 589999988775 99999 999999999999999998853 389999999 7777778999888821
Q ss_pred ---cCCCCeeeCChH
Q 013511 297 ---QKSGGVVSRNSK 308 (441)
Q Consensus 297 ---~~~g~vv~~~~~ 308 (441)
.++|++++.++.
T Consensus 223 ~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 223 EATGKPGRLVEIDDT 237 (258)
T ss_pred ccCCCCceEEecCCH
Confidence 126888877653
No 126
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=6.1e-25 Score=218.62 Aligned_cols=189 Identities=10% Similarity=0.104 Sum_probs=142.5
Q ss_pred CchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc----CCCCc
Q 013511 98 PMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD----IGQGA 171 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld----p~~G~ 171 (441)
+|++++|+++.|... ...++++ +||++.+|++++|+|+||||||||+|+|+|+ +. |++|+
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~--vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl------------~~~~~~~~~G~ 67 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDR--VSMTLTEGEIRGLVGESGSGKSLIAKAICGV------------TKDNWRVTADR 67 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEee--eEEEECCCCEEEEECCCCCCHHHHHHHHHcc------------CCCCCCCcceE
Confidence 467788888888421 1246765 9999999999999999999999999999998 65 58899
Q ss_pred ccCCceeeeeeccCcC----CCCCCCCcccceEEEecccCccCCHHHHHH-----------------HHHH---------
Q 013511 172 ITIPGCIAATPIELPI----DPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------------LVKE--------- 221 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------------~~~~--------- 221 (441)
|.++|..+........ ....++.+|.+..++++.+|+.+|+..... .+.+
T Consensus 68 i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 68 MRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred EEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 9999976532211111 123455666665556777888777753210 0111
Q ss_pred ---HHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHH
Q 013511 222 ---LAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDV 284 (441)
Q Consensus 222 ---l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~ 284 (441)
..+.+...||+||+||+.+ +|+|| +++||...+..+.+++++++. .+||++||+ +..+
T Consensus 148 ~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHd-----l~~v 222 (330)
T PRK15093 148 HKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD-----LQML 222 (330)
T ss_pred hHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHH
Confidence 1133445799999999876 99999 999999999999999998753 389999999 8888
Q ss_pred hcCCCCeEEEEecCCCCeeeCChH
Q 013511 285 LKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 285 ~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
.+.||++.+| ..|.+++.++.
T Consensus 223 ~~~~dri~vm---~~G~ive~g~~ 243 (330)
T PRK15093 223 SQWADKINVL---YCGQTVETAPS 243 (330)
T ss_pred HHhCCEEEEE---ECCEEEEECCH
Confidence 8889999999 89999988753
No 127
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-24 Score=207.89 Aligned_cols=202 Identities=15% Similarity=0.227 Sum_probs=144.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-----CCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-----QGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-----~G~i~ 173 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|. +|+|.
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~~~~~~G~i~ 67 (252)
T PRK14272 4 LLSAQDVNIYYGDK--QAVKN--VNLDVQRGTVNALIGPSGCGKTTFLRAINRM------------HDLTPGARVTGRIL 67 (252)
T ss_pred EEEEeeeEEEECCE--Eeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCcCCCCceeEE
Confidence 56677888888654 46665 9999999999999999999999999999999 7764 89999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HH----HH-------------HHHHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VK----EL-------------AQMLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~----~l-------------~~~~~~ 228 (441)
++|................+.+.++...+|+..|+.+|+.+.... .. ++ .+....
T Consensus 68 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 147 (252)
T PRK14272 68 LDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPAT 147 (252)
T ss_pred ECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcc
Confidence 999754321001111123345555555678888999998754311 00 11 011224
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+||+||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +......||++.++
T Consensus 148 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l-- 220 (252)
T PRK14272 148 GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN-----MHQAARVSDTTSFF-- 220 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHHhCCEEEEE--
Confidence 589999988765 99999 999999999999999998864 388999999 77666779999999
Q ss_pred cCCCCeeeCChHHHH--HHHHHHHHHHhcC
Q 013511 297 QKSGGVVSRNSKVRQ--KARSYRIREYFYG 324 (441)
Q Consensus 297 ~~~g~vv~~~~~~~~--~~r~~~~~~yf~g 324 (441)
++|+++..++.... .......+.|+.+
T Consensus 221 -~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 249 (252)
T PRK14272 221 -LVGDLVEHGPTDQLFTNPRDERTEAYVSG 249 (252)
T ss_pred -ECCEEEEeCCHHHHHhCcCcHHHHHHHhc
Confidence 88988877653321 1112234556654
No 128
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=6.2e-25 Score=213.76 Aligned_cols=186 Identities=19% Similarity=0.273 Sum_probs=138.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~--vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~------------~~p~~G~i~~~g~ 69 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKD--VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL------------LLPEAGTITVGGM 69 (279)
T ss_pred ceEEEEEEEEEeCCCCccceee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECCE
Confidence 4678889998886432247765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~r 237 (441)
..............++.++.+. .++...|+.+|+.+.... +. .+.+.....||+|++||
T Consensus 70 ~i~~~~~~~~~~~i~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 148 (279)
T PRK13635 70 VLSEETVWDVRRQVGMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR 148 (279)
T ss_pred ECCcCcHHHHhhheEEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH
Confidence 6532111111222233333331 244557999998764211 11 11223345699999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +.... .|+++.++ .+|.++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~-----~~~~~-~~d~i~~l---~~G~i~ 219 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD-----LDEAA-QADRVIVM---NKGEIL 219 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHHH-cCCEEEEE---ECCEEE
Confidence 765 99999 999999999999999998753 389999999 66665 48999999 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 220 ~~g~ 223 (279)
T PRK13635 220 EEGT 223 (279)
T ss_pred EECC
Confidence 7665
No 129
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.89 E-value=5.3e-25 Score=205.92 Aligned_cols=177 Identities=18% Similarity=0.187 Sum_probs=130.1
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++.+ .++++ +||++.+|++++|+||||||||||+++|+|+ ++|++|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~-~~l~~--~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~~ 67 (214)
T cd03292 3 FINVTKTYPNGT-AALDG--INISISAGEFVFLVGPSGAGKSTLLKLIYKE------------ELPTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEeCCCc-eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEccc
Confidence 456666674321 36655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCc-CCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee
Q 013511 182 PIELP-IDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 182 ~~~~~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
..... ......+.+.++...+|+..|+.+|+.++... +.+ ..+.....||+||+||+++
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAI 147 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHH
Confidence 11000 01122344555555688889999999775321 111 1123345699999998765
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++ +.|.
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~-----~~~~~~~~d~i~~l---~~G~ 213 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA-----KELVDTTRHRVIAL---ERGK 213 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCc
Confidence 99999 999999999999999998743 489999999 66666678998888 5554
No 130
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.2e-24 Score=209.07 Aligned_cols=176 Identities=18% Similarity=0.296 Sum_probs=132.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 1 ml~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 64 (255)
T PRK11248 1 MLQISHLYADYGGK--PALED--INLTLESGELLVVLGPSGCGKTTLLNLIAGF------------VPYQHGSITLDGKP 64 (255)
T ss_pred CEEEEEEEEEeCCe--eeEee--eeEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEE
Confidence 45567777777653 36655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~ 238 (441)
... .....++ .++...+++..|+.+|+.+.... +.++ .+.....||+|++||+
T Consensus 65 ~~~-----~~~~~~~--v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl 137 (255)
T PRK11248 65 VEG-----PGAERGV--VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137 (255)
T ss_pred CCC-----CCCcEEE--EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHH
Confidence 421 1112233 33444567778999998764211 1111 1233456999999987
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecC--CCCe
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK--SGGV 302 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~--~g~v 302 (441)
.+ +|+|| +++||+..++.+.++|+++. ..+||+++|+ +......||++.++ + .|.+
T Consensus 138 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~-----~~~~~~~~d~i~~l---~~~~G~i 209 (255)
T PRK11248 138 GIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD-----IEEAVFMATELVLL---SPGPGRV 209 (255)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCCcEE
Confidence 65 99999 99999999999999999873 3489999999 77776788998887 4 4666
Q ss_pred eeC
Q 013511 303 VSR 305 (441)
Q Consensus 303 v~~ 305 (441)
++.
T Consensus 210 ~~~ 212 (255)
T PRK11248 210 VER 212 (255)
T ss_pred EEE
Confidence 554
No 131
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.5e-24 Score=210.38 Aligned_cols=186 Identities=12% Similarity=0.131 Sum_probs=138.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~ 171 (441)
.+|++++|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ +. |++|+
T Consensus 22 ~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl------------~~~~~~~~~~G~ 85 (271)
T PRK14238 22 KVVFDTQNLNLWYGED--HALKN--INLDIHENEVTAIIGPSGCGKSTYIKTLNRM------------VELVPSVKTTGK 85 (271)
T ss_pred ceEEEEeeeEEEECCc--ceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------ccCCCCCCCcee
Confidence 4589999999999764 46665 9999999999999999999999999999999 76 68999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------H----HHHH-------------HHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------V----KELA-------------QML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~----~~l~-------------~~~ 226 (441)
|.++|................+.+.++...+|. .|+.+|+.+.... . .+.. +..
T Consensus 86 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 164 (271)
T PRK14238 86 ILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN 164 (271)
T ss_pred EEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC
Confidence 999997542110000111223444444445665 4999998753211 0 1101 112
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+|++||+++ +|+|| ++++|+..++.+.++|+++... +||+++|+ +....+.||++.++
T Consensus 165 ~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~-----~~~i~~~~d~i~~l 239 (271)
T PRK14238 165 AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN-----MQQAARISDKTAFF 239 (271)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcC-----HHHHHHhCCEEEEE
Confidence 23589999988765 99999 9999999999999999888644 89999999 77777789999998
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 240 ---~~G~i~~~g~ 249 (271)
T PRK14238 240 ---LNGYVNEYDD 249 (271)
T ss_pred ---ECCEEEEeCC
Confidence 8888887665
No 132
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.89 E-value=7.3e-25 Score=206.07 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=131.7
Q ss_pred hhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 100 VSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 100 l~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++++|+++.|++.. ..++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~--isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~ 67 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKG--VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL------------DNPTSGEVLFNGQ 67 (221)
T ss_pred EEEEeeeEEccCCCcceEeEee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCE
Confidence 45677888886421 236665 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcC-C-CCCCCCcccceEEEecccCccCCHHHHHH-----------HHHH---------HHHHHHHHhccCcc
Q 013511 178 IAATPIELPI-D-PVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~---------l~~~~~~~ls~g~~ 235 (441)
.......... . ....+.+.++...+++..|+.+|+.+... .+.+ ..+.....||+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 147 (221)
T TIGR02211 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGER 147 (221)
T ss_pred EhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHH
Confidence 5432111110 0 01234444555567888899999876321 0111 12233456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +.... .+|++.++ ++|.
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~-----~~~~~-~~d~v~~l---~~G~ 218 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD-----LELAK-KLDRVLEM---KDGQ 218 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHh-hcCEEEEE---eCCE
Confidence 98775 99999 99999999999999998874 2489999999 65553 46998888 6776
Q ss_pred ee
Q 013511 302 VV 303 (441)
Q Consensus 302 vv 303 (441)
++
T Consensus 219 i~ 220 (221)
T TIGR02211 219 LF 220 (221)
T ss_pred ec
Confidence 54
No 133
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-24 Score=207.12 Aligned_cols=181 Identities=18% Similarity=0.346 Sum_probs=136.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~-~~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 67 (242)
T cd03295 3 FENVTKRYGGG-KKAVNN--LNLEIAKGEFLVLIGPSGSGKTTTMKMINRL------------IEPTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEeCCc-ceEeee--eEEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCeEcCc
Confidence 45667777651 136655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH-----------HHHHHHHHhccCccceee
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE-----------LAQMLERQFNGNAESRAA 239 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~-----------l~~~~~~~ls~g~~~r~~ 239 (441)
..... ....+.+.++...+++..|+.+|+.++... +.+ +.+.....||+|++||++
T Consensus 68 ~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~ 145 (242)
T cd03295 68 QDPVE--LRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVG 145 (242)
T ss_pred CChHH--hhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHH
Confidence 11111 122344555555678889999998764211 111 223334569999999876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+ +|+|| ++++|+..++.+.++++++. ..+||+++|+ +....+.+|++.++ ++|+++..
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~-----~~~~~~~~d~i~~l---~~G~i~~~ 217 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-----IDEAFRLADRIAIM---KNGEIVQV 217 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEEEEe
Confidence 5 99999 99999999999999999874 2489999999 77666789999988 88888876
Q ss_pred Ch
Q 013511 306 NS 307 (441)
Q Consensus 306 ~~ 307 (441)
++
T Consensus 218 ~~ 219 (242)
T cd03295 218 GT 219 (242)
T ss_pred cC
Confidence 55
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.89 E-value=2.4e-24 Score=202.93 Aligned_cols=177 Identities=16% Similarity=0.225 Sum_probs=134.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 l~~v~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 3 TKNLSKRFGKQ--TAVNN--ISLTVPKNSVYGLLGPNGAGKSTLLKMITGI------------LRPTSGEIIFDGHPWTR 66 (223)
T ss_pred EEeEEEEECCE--EEEee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEeccc
Confidence 45666666543 35655 9999999999999999999999999999999 99999999999964321
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------H---------HHHHHHHHHHhccCccceeee-----
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------V---------KELAQMLERQFNGNAESRAAG----- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------~---------~~l~~~~~~~ls~g~~~r~~~----- 240 (441)
.. ...+.+.++...+++..|+.+|+.++... + ....+.....||+|++||+++
T Consensus 67 ---~~---~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~ 140 (223)
T TIGR03740 67 ---KD---LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALL 140 (223)
T ss_pred ---cc---cccEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHh
Confidence 11 12344444444567778999998764321 1 122344556799999988765
Q ss_pred -----EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 -----MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 -----lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|+|| ++++|+..++.+.+++++++. .+||+++|+ +......|+++.++ ++|.++..++.
T Consensus 141 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~g~i~~~~~~ 208 (223)
T TIGR03740 141 NHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI-----LSEVQQLADHIGII---SEGVLGYQGKI 208 (223)
T ss_pred cCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHhcCEEEEE---eCCEEEEecCh
Confidence 99999 999999999999999998853 389999999 77766789999888 78888776653
No 135
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.6e-24 Score=210.30 Aligned_cols=194 Identities=11% Similarity=0.127 Sum_probs=140.6
Q ss_pred eeCCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----
Q 013511 93 TADETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI----- 167 (441)
Q Consensus 93 ~~~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp----- 167 (441)
+....+|+++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|
T Consensus 14 ~~~~~~~l~~~nl~~~~~~~--~~l~~--vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl------------~~~~~~~~ 77 (274)
T PRK14265 14 INPDHSVFEVEGVKVFYGGF--LALVD--VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM------------NDLIPGAK 77 (274)
T ss_pred cCCCCceEEEeeEEEEeCCe--EEEee--eeeEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cccccCCC
Confidence 44556799999999999764 46765 9999999999999999999999999999998 653
Q ss_pred CCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------HHHH-------------HH
Q 013511 168 GQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------VKEL-------------AQ 224 (441)
Q Consensus 168 ~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------~~~l-------------~~ 224 (441)
.+|+|.++|................+.+.++...+|. .|+.+|+.+.... +... .+
T Consensus 78 ~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (274)
T PRK14265 78 VEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156 (274)
T ss_pred cCceEEECCEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhc
Confidence 5899999997542110011111223444444445565 4889988764210 1111 11
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.....||+|++||+++ +|+|| +++||+..++.+.++|++++.. +||+++|+ +....+.||++.
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~-----~~~~~~~~d~i~ 231 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN-----MQQASRVADWTA 231 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEE
Confidence 2224489999988775 99999 9999999999999999988544 89999999 777777899998
Q ss_pred EEEe------cCCCCeeeCChH
Q 013511 293 VVKL------QKSGGVVSRNSK 308 (441)
Q Consensus 293 vl~l------~~~g~vv~~~~~ 308 (441)
+++- .+.|.+++.++.
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred EEecccccccccCceEEEeCCH
Confidence 8820 026888887663
No 136
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=9e-25 Score=203.97 Aligned_cols=172 Identities=21% Similarity=0.221 Sum_probs=125.1
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++....++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.....
T Consensus 2 ~~~l~~~~~~~~~~il~~--vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 67 (211)
T cd03225 2 LKNLSFSYPDGARPALDD--ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL------------LGPTSGEVLVDGKDLTK 67 (211)
T ss_pred ceeEEEecCCCCeeeecc--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEEccc
Confidence 456677776521246655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEE-EecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccceeee
Q 013511 182 PIELPIDPVEGIPLEMPLVY-FFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRAAG 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~~ 240 (441)
...... ...+.+.++... .+...|+.+|+.+.... +.++ .+.....||+||+||+++
T Consensus 68 ~~~~~~--~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 145 (211)
T cd03225 68 LSLKEL--RRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAI 145 (211)
T ss_pred CCHHHH--HhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHH
Confidence 111111 123444444322 24567999998764211 1111 122334599999998775
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+|+|| +++||+..++.+.++++++.. .+||+++|+ +......||++.++
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~-----~~~~~~~~d~i~~l 207 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD-----LDLLLELADRVIVL 207 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 99999 999999999999999988754 389999999 77776778998888
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.89 E-value=8.6e-25 Score=211.35 Aligned_cols=187 Identities=19% Similarity=0.192 Sum_probs=135.5
Q ss_pred chhHHHHHHHHhhh-------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 99 MVSYVNVNAVLEGR-------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 99 ml~~~nl~~~~~~~-------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
|++++|+++.|+.. ...++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~ 67 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTN--VSLSIEEGETVGLLGRSGCGKSTLARLLLGL------------EKPAQGT 67 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeC--ceeEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcE
Confidence 45566777777521 1246765 9999999999999999999999999999999 9999999
Q ss_pred ccCCceeeeeeccCcC-CCCCCCCcccce--EEEecccCccCCHHHHHHH------------HHH----------HHHHH
Q 013511 172 ITIPGCIAATPIELPI-DPVEGIPLEMPL--VYFFGHATPSNNVELYKVL------------VKE----------LAQML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~-~~~~~~~~~~~~--~~~~g~~tv~en~~~~~~~------------~~~----------l~~~~ 226 (441)
|.++|........... .....+.+.++. ..+++..|+.+|+.+.... +.+ +.+..
T Consensus 68 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 68 VSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred EEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 9999975432111110 011223343333 2456778898887543210 111 11233
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
...||+|++||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +......||++.
T Consensus 148 ~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~-----~~~~~~~~d~i~ 222 (265)
T TIGR02769 148 PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD-----LRLVQSFCQRVA 222 (265)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-----HHHHHHHhcEEE
Confidence 45699999988775 99999 99999999999999998874 2489999999 777767889998
Q ss_pred EEEecCCCCeeeCCh
Q 013511 293 VVKLQKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l~~~g~vv~~~~ 307 (441)
++ +.|.++..++
T Consensus 223 ~l---~~G~i~~~g~ 234 (265)
T TIGR02769 223 VM---DKGQIVEECD 234 (265)
T ss_pred EE---eCCEEEEECC
Confidence 88 7888887765
No 138
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-24 Score=208.94 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=136.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G 170 (441)
..+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ +. |++|
T Consensus 7 ~~~~l~i~~v~~~~~~~--~il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G 70 (264)
T PRK14243 7 TETVLRTENLNVYYGSF--LAVKN--VWLDIPKNQITAFIGPSGCGKSTILRCFNRL------------NDLIPGFRVEG 70 (264)
T ss_pred CceEEEEeeeEEEECCE--EEeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------hcccCCCCCce
Confidence 34578889999998764 46665 9999999999999999999999999999998 65 4789
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----------HHHH-------------HHHHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----------VKEL-------------AQMLE 227 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----------~~~l-------------~~~~~ 227 (441)
+|.++|................+.+.++...+|+ .|+.+|+.+.... ..++ .+...
T Consensus 71 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 149 (264)
T PRK14243 71 KVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSG 149 (264)
T ss_pred EEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCc
Confidence 9999997542110011111223444444445565 4888988764210 1111 11122
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| +++||+..++.+.++++++... +||+++|+ +....+.||++.+++
T Consensus 150 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~-----~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 150 LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN-----MQQAARVSDMTAFFN 224 (264)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEEe
Confidence 3489999988765 99999 9999999999999999988644 89999999 777778899998882
Q ss_pred e------cCCCCeeeCCh
Q 013511 296 L------QKSGGVVSRNS 307 (441)
Q Consensus 296 l------~~~g~vv~~~~ 307 (441)
- -..|.+++.++
T Consensus 225 ~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDR 242 (264)
T ss_pred cccccccccCceEEEeCC
Confidence 0 01688887765
No 139
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.89 E-value=6.6e-25 Score=218.06 Aligned_cols=190 Identities=14% Similarity=0.173 Sum_probs=144.4
Q ss_pred CCchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCc
Q 013511 97 TPMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~ 171 (441)
.+++++.|+++.|... ...++++ +||++.+|++++|+|+||||||||+++|+|+ ++|. +|+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl------------~~p~~~~sG~ 75 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVND--LNFSLRAGETLGIVGESGSGKSQTAFALMGL------------LAANGRIGGS 75 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEee--eEEEEcCCCEEEEECCCCchHHHHHHHHHcC------------CCCCCCCCeE
Confidence 4578888998888531 2346765 9999999999999999999999999999999 8886 999
Q ss_pred ccCCceeeeeeccCcC---C-CCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH------------H
Q 013511 172 ITIPGCIAATPIELPI---D-PVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL------------A 223 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l------------~ 223 (441)
|.++|..+.......+ + ...++.+|.+...+++.+++.+|+...... +.++ .
T Consensus 76 I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~ 155 (330)
T PRK09473 76 ATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM 155 (330)
T ss_pred EEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh
Confidence 9999986533221111 1 234555666555678888888776432211 1111 1
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
+.+...||+||+||+.+ +|+|| +++||...+..+.+++++++. .++|++||| +..+.+.+|
T Consensus 156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-----l~~~~~~~D 230 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD-----LGVVAGICD 230 (330)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHhCC
Confidence 22456799999999876 99999 999999999999999988853 389999999 887777899
Q ss_pred CeEEEEecCCCCeeeCChH
Q 013511 290 NVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 290 ~v~vl~l~~~g~vv~~~~~ 308 (441)
++.+| +.|.+++.++.
T Consensus 231 ri~vm---~~G~ive~g~~ 246 (330)
T PRK09473 231 KVLVM---YAGRTMEYGNA 246 (330)
T ss_pred EEEEE---ECCEEEEECCH
Confidence 99999 89999988763
No 140
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-24 Score=208.17 Aligned_cols=202 Identities=16% Similarity=0.219 Sum_probs=143.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-----CCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-----QGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-----~G~i 172 (441)
++++++|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++|. +|+|
T Consensus 3 ~~l~~~~l~~~~~~~--~il~~--~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~v 66 (251)
T PRK14249 3 PKIKIRGVNFFYHKH--QVLKN--INMDFPERQITAIIGPSGCGKSTLLRALNRM------------NDIVSGARLEGAV 66 (251)
T ss_pred ceEEEEEEEEEECCe--eEecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCccccCCcccEE
Confidence 456777888888653 36665 9999999999999999999999999999999 8886 6999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-------------HHHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-------------AQMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-------------~~~~~ 227 (441)
.++|................+.+.++...+|+. |+.+|+.+.... +... .+...
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 145 (251)
T PRK14249 67 LLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSG 145 (251)
T ss_pred EECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCc
Confidence 999975422111111112334444444456664 899998764321 1100 11122
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++
T Consensus 146 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~-----~~~~~~~~d~i~~l- 219 (251)
T PRK14249 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHN-----MQQAARASDWTGFL- 219 (251)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHhhCCEEEEE-
Confidence 3489999988765 99999 999999999999999998853 399999999 77777788999998
Q ss_pred ecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 296 LQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 296 l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+.|.++..++... .......+.+|+.+
T Consensus 220 --~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14249 220 --LTGDLVEYGRTGEIFSRPRDKRTEDYITG 248 (251)
T ss_pred --eCCeEEEeCCHHHHHhCCCChHHHHHHhc
Confidence 8888877665322 22233445666654
No 141
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.2e-24 Score=208.53 Aligned_cols=189 Identities=15% Similarity=0.159 Sum_probs=136.6
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC--CCCcccC
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI--GQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp--~~G~i~~ 174 (441)
++|++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+.-. ..| .+|+|.+
T Consensus 1 ~~~l~~~~~~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~---------~~~~~~~G~i~~ 67 (250)
T PRK14245 1 TVKIDARDVNFWYGDF--HALKG--ISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL---------IPATRLEGEIRI 67 (250)
T ss_pred CcEEEEEEEEEEECCE--eEEee--eeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc---------cCCCCCceEEEE
Confidence 4678888999888764 36665 9999999999999999999999999999996100 133 5899999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHHH-------------HHHHH
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELAQ-------------MLERQ 229 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~~-------------~~~~~ 229 (441)
+|................+.+.++...+++ .|+.+|+.+.... +.++.+ .....
T Consensus 68 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 68 DGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred CCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 997553211000111223444444444565 5899998754210 111111 12235
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
||+||+||+++ +|+|| +++||+..++.+.++++++... +||+++|+ +....+.||++.++
T Consensus 147 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~-----~~~~~~~~d~v~~l--- 218 (250)
T PRK14245 147 LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN-----MQQAARVSDKTAFF--- 218 (250)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHhhCCEEEEE---
Confidence 89999988765 99999 9999999999999999988544 89999999 77777789999998
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
+.|+++..+.
T Consensus 219 ~~G~~~~~~~ 228 (250)
T PRK14245 219 YMGEMVEYDD 228 (250)
T ss_pred ECCEEEEECC
Confidence 8898887765
No 142
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=7.8e-25 Score=213.56 Aligned_cols=187 Identities=18% Similarity=0.183 Sum_probs=139.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++.+ .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~~-~~l~~--vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl------------~~p~~G~i~i~g~ 68 (283)
T PRK13636 4 YILKVEELNYNYSDGT-HALKG--ININIKKGEVTAILGGNGAGKSTLFQNLNGI------------LKPSSGRILFDGK 68 (283)
T ss_pred ceEEEEeEEEEeCCCC-eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCccEEEECCE
Confidence 4788899999996322 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccC--cCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCcc
Q 013511 178 IAATPIEL--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 178 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~ 235 (441)
.+...... .+....++.++.+...+ ...|+.+|+.+.... +.. +.+.....||+|++
T Consensus 69 ~~~~~~~~~~~~~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~ 147 (283)
T PRK13636 69 PIDYSRKGLMKLRESVGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQK 147 (283)
T ss_pred ECCCCcchHHHHHhhEEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHH
Confidence 65211000 11222334444432223 346899998764221 111 12333456999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+.+ +|+|| +++||+.+++.+.++++++.. .+||+++|+ +......||++.++ ++|.
T Consensus 148 qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~-----~~~~~~~~dri~~l---~~G~ 219 (283)
T PRK13636 148 KRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD-----IDIVPLYCDNVFVM---KEGR 219 (283)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHHhCCEEEEE---ECCE
Confidence 88765 99999 999999999999999988743 399999999 87777789999999 8899
Q ss_pred eeeCChH
Q 013511 302 VVSRNSK 308 (441)
Q Consensus 302 vv~~~~~ 308 (441)
++..++.
T Consensus 220 i~~~g~~ 226 (283)
T PRK13636 220 VILQGNP 226 (283)
T ss_pred EEEeCCH
Confidence 8887753
No 143
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9e-25 Score=211.86 Aligned_cols=188 Identities=18% Similarity=0.262 Sum_probs=137.5
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
.+.+|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+++|+|+ ++|++|+|.+
T Consensus 3 ~~~~~l~~~nl~~~~~~~~~~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~ 68 (271)
T PRK13632 3 NKSVMIKVENVSFSYPNSENNALKN--VSFEINEGEYVAILGHNGSGKSTISKILTGL------------LKPQSGEIKI 68 (271)
T ss_pred CcceEEEEEeEEEEcCCCCccceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEE
Confidence 3456888999999995322246765 9999999999999999999999999999999 9999999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceE-EEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccC
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLV-YFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGN 233 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g 233 (441)
+|........... ...+.+.++.. .+|...|+.+|+.+.... +.++ .+.....||+|
T Consensus 69 ~g~~i~~~~~~~~--~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 146 (271)
T PRK13632 69 DGITISKENLKEI--RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGG 146 (271)
T ss_pred CCEecCcCCHHHH--hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHH
Confidence 9975422111111 22333333332 145567999998764221 1111 12223469999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
|+||+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +.... .||++.++ ++
T Consensus 147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~-~~d~v~~l---~~ 217 (271)
T PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD-----MDEAI-LADKVIVF---SE 217 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec-----hhHHh-hCCEEEEE---EC
Confidence 9988765 99999 999999999999999998742 489999999 55553 68999888 88
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|.++..+.
T Consensus 218 G~i~~~g~ 225 (271)
T PRK13632 218 GKLIAQGK 225 (271)
T ss_pred CEEEEecC
Confidence 88876654
No 144
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.8e-24 Score=200.73 Aligned_cols=177 Identities=16% Similarity=0.107 Sum_probs=133.6
Q ss_pred hhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc---CCCCcccC
Q 013511 100 VSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD---IGQGAITI 174 (441)
Q Consensus 100 l~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld---p~~G~i~~ 174 (441)
+.++|++|.|+.. ...++++ ++|++.+|++++|+||||||||||+++|+|+ ++ |.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~~~~G~i~i 69 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKD--FSGVVKPGEMVLVLGRPGSGCSTLLKALANR------------TEGNVSVEGDIHY 69 (202)
T ss_pred EEEEccEEEeccCCCCceeeee--EEEEECCCcEEEEECCCCCCHHHHHHHhccc------------CCCCCCcceEEEE
Confidence 4567888888643 2246665 9999999999999999999999999999999 88 88999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEe
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlD 244 (441)
+|...... ... ....+.+.++...+++.+|+.+|+.++.... .+.....||+|++||+.+ +|+|
T Consensus 70 ~g~~~~~~-~~~--~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~LS~Ge~qrl~laral~~~p~llllD 143 (202)
T cd03233 70 NGIPYKEF-AEK--YPGEIIYVSEEDVHFPTLTVRETLDFALRCK---GNEFVRGISGGERKRVSIAEALVSRASVLCWD 143 (202)
T ss_pred CCEECccc-hhh--hcceEEEEecccccCCCCcHHHHHhhhhhhc---cccchhhCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence 99754321 111 1223444454456788889999988764321 445567899999988765 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcCC---CEEE-EeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 245 T-MGWIEGVGYELLLHAIDTFKA---NVVL-VLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~~---~~Vi-vi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
| ++++|+..++.+.++++++.. .+++ +++|+ .....+.||++.++ ++|+++.
T Consensus 144 EPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~-----~~~~~~~~d~i~~l---~~G~i~~ 200 (202)
T cd03233 144 NSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA-----SDEIYDLFDKVLVL---YEGRQIY 200 (202)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC-----HHHHHHhCCeEEEE---ECCEEEe
Confidence 9 999999999999999998743 2444 45666 55556678999888 7888764
No 145
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.9e-24 Score=220.44 Aligned_cols=183 Identities=21% Similarity=0.315 Sum_probs=144.8
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++|++|+|..+. ..++++ +||++++|++|++|||||+||||++.+|.++ .||.+|+|.+||.
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~--lsfti~pGe~vALVGPSGsGKSTiasLL~rf------------Y~PtsG~IllDG~ 530 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKN--LSFTIRPGEVVALVGPSGSGKSTIASLLLRF------------YDPTSGRILLDGV 530 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcC--ceeeeCCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCCeEEECCe
Confidence 477899999998764 346765 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----H---HHHH----------HHH-------HHHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----V---KELA----------QML-------ERQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----~---~~l~----------~~~-------~~~ls~ 232 (441)
++.......++...+++-|.| -+|. .|++||+.++... + .+.+ +.+ ...|||
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEP--vLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEP--VLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccc--eeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 775443333444444444554 4555 5999999886431 1 1111 111 125999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
|||||+++ ||+|| |+.||.++...+.+.+.+...+ ||++|.|. |..+ +.+|+|.|+ ++|
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHR-----LSTV-~~Ad~Ivvi---~~G 678 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHR-----LSTV-RHADQIVVI---DKG 678 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehh-----hhHh-hhccEEEEE---cCC
Confidence 99999887 99999 9999999999999999877655 99999999 7665 578999999 999
Q ss_pred CeeeCCh
Q 013511 301 GVVSRNS 307 (441)
Q Consensus 301 ~vv~~~~ 307 (441)
.+++.+.
T Consensus 679 ~V~E~G~ 685 (716)
T KOG0058|consen 679 RVVEMGT 685 (716)
T ss_pred eEEeccc
Confidence 9999985
No 146
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.89 E-value=1.9e-24 Score=231.77 Aligned_cols=187 Identities=18% Similarity=0.264 Sum_probs=144.0
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|++++|+.....++++ +|+++++|++++|+|+||||||||+|+|.|+ .+|.+|+|.++|.+.
T Consensus 472 I~~~nvsf~y~~~~~~vL~~--isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl------------y~p~~G~I~~dg~dl 537 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLED--LSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL------------YKPQQGRILLDGVDL 537 (709)
T ss_pred EEEEEEEEEeCCCCcchhhc--eeEEeCCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEeH
Confidence 67889999998876567866 9999999999999999999999999999999 999999999999877
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------HHH--H---HHHHH--------------HHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------VKE--L---AQMLE--------------RQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------~~~--l---~~~~~--------------~~ls~g~ 234 (441)
.......++...+ +..+..++ .+-|++||+.+.... +.. + .+-+. ..|||||
T Consensus 538 ~~i~~~~lR~~ig--~V~Q~~~L-f~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ 614 (709)
T COG2274 538 NDIDLASLRRQVG--YVLQDPFL-FSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ 614 (709)
T ss_pred HhcCHHHHHhhee--EEcccchh-hcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence 5443334444444 44444444 445999999875321 110 0 11111 2389999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|||+++ +|+|| |++||+...+.+.+.+.+.... |+|+++|. +.. .+.||++.|+ +.|.+
T Consensus 615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHR-----l~t-i~~adrIiVl---~~Gki 685 (709)
T COG2274 615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR-----LST-IRSADRIIVL---DQGKI 685 (709)
T ss_pred HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEcc-----chH-hhhccEEEEc---cCCce
Confidence 998775 99999 9999999999999999888743 88888898 443 3678999999 99999
Q ss_pred eeCChHHHHH
Q 013511 303 VSRNSKVRQK 312 (441)
Q Consensus 303 v~~~~~~~~~ 312 (441)
++.++.+...
T Consensus 686 v~~gs~~ell 695 (709)
T COG2274 686 VEQGSHEELL 695 (709)
T ss_pred eccCCHHHHH
Confidence 9999855433
No 147
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.4e-24 Score=210.35 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=136.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~ 171 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++ |++|+
T Consensus 11 ~~~l~i~nl~~~~~~~--~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~~~p~~G~ 74 (269)
T PRK14259 11 NIIISLQNVTISYGTF--EAVKN--VFCDIPRGKVTALIGPSGCGKSTVLRSLNRM------------NDLIEGCSLKGR 74 (269)
T ss_pred CceEEEEeEEEEECCE--EEEcc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccccCCCCCceE
Confidence 3578889999999764 36765 9999999999999999999999999999998 76 58999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHHHH-------------HHHHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKELA-------------QMLER 228 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~l~-------------~~~~~ 228 (441)
|.++|.............+..+.+.++...+|+ .|+.+|+.+... .+.++. +....
T Consensus 75 v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 153 (269)
T PRK14259 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGY 153 (269)
T ss_pred EEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcc
Confidence 999997542110011111123444444445666 499999875421 111111 11224
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+|++||+++ +|+|| +++||+..++.+.++|++++.. +||+++|+ +......||++.++.-
T Consensus 154 ~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~-----~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 154 SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN-----MQQAVRVSDMTAFFNA 228 (269)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEEec
Confidence 589999988765 99999 9999999999999999988543 89999999 7777778999988831
Q ss_pred --------cCCCCeeeCChH
Q 013511 297 --------QKSGGVVSRNSK 308 (441)
Q Consensus 297 --------~~~g~vv~~~~~ 308 (441)
.+.|.+++.+..
T Consensus 229 ~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 229 EEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred cccccccccccceEEEeCCH
Confidence 112456776653
No 148
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3e-24 Score=205.77 Aligned_cols=186 Identities=13% Similarity=0.205 Sum_probs=137.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++| .+|+|
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl------------~~~~~~~~~~G~i 65 (250)
T PRK14262 2 PIIEIENFSAYYGEK--KAVKN--VTMKIFKNQITAIIGPSGCGKTTLLRSINRM------------NDHIPGFRVEGKI 65 (250)
T ss_pred ceEEEEeeEEEeCCc--eeEee--eeEeecCCCEEEEECCCCCCHHHHHHHHhcc------------ccCCCCCCcceEE
Confidence 477888998888753 46665 9999999999999999999999999999998 763 89999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH-------------HHHHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE-------------LAQMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~-------------l~~~~~ 227 (441)
.++|................+.+.++...++. .|+.+|+.+.... +.. +.+...
T Consensus 66 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (250)
T PRK14262 66 YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPG 144 (250)
T ss_pred EECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh
Confidence 99997543210000011223444444445566 7999998764211 011 112233
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| ++++|..+++.+.++|+++... +||+++|+ +......+|++.++
T Consensus 145 ~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~-----~~~~~~~~d~i~~l- 218 (250)
T PRK14262 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHN-----IGQAIRIADYIAFM- 218 (250)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCC-----HHHHHHhCCEEEEE-
Confidence 5689999988765 99999 9999999999999999987543 89999999 77666788999998
Q ss_pred ecCCCCeeeCChH
Q 013511 296 LQKSGGVVSRNSK 308 (441)
Q Consensus 296 l~~~g~vv~~~~~ 308 (441)
+.|+++..+..
T Consensus 219 --~~G~i~~~g~~ 229 (250)
T PRK14262 219 --YRGELIEYGPT 229 (250)
T ss_pred --ECCEEEEecCH
Confidence 88888876653
No 149
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.89 E-value=1e-24 Score=209.28 Aligned_cols=183 Identities=21% Similarity=0.249 Sum_probs=136.6
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..+.
T Consensus 2 ~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 2 RFSDVTKRFGIL--TVLDG--LNFSVAAGEKVALIGPSGSGKSTILRILMTL------------EPIDEGQIQVEGEQLY 65 (252)
T ss_pred EEEEEEEEeCCe--eEEee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEcc
Confidence 345677777643 36655 9999999999999999999999999999999 9999999999997553
Q ss_pred eec--cC---c------CCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHH---------HHHHHHH
Q 013511 181 TPI--EL---P------IDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKE---------LAQMLER 228 (441)
Q Consensus 181 ~~~--~~---~------~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~---------l~~~~~~ 228 (441)
... .. + ......+.+.++...+|+..|+.+|+.+... .+.+ +.+....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 145 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPA 145 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChh
Confidence 211 00 0 0112334455555567888899999876321 0111 1223345
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.||+|++||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.+|++.++
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l 220 (252)
T TIGR03005 146 QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE-----MGFAREFADRVCFF 220 (252)
T ss_pred hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-----HHHHHHhcCEEEEE
Confidence 699999988765 99999 99999999999999998874 2489999999 77776789999998
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
+.|.+++.++
T Consensus 221 ---~~G~i~~~g~ 230 (252)
T TIGR03005 221 ---DKGRIVEQGK 230 (252)
T ss_pred ---ECCEEEEeCC
Confidence 8888887665
No 150
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.7e-24 Score=208.52 Aligned_cols=187 Identities=13% Similarity=0.164 Sum_probs=138.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc--C---CCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD--I---GQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld--p---~~G 170 (441)
.++|++++|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++ | .+|
T Consensus 9 ~~~~l~i~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~p~~~~~G 72 (259)
T PRK14274 9 KQEVYQINGMNLWYGQH--HALKN--INLSIPENEVTAIIGPSGCGKSTFIKTLNLM------------IQMVPNVKLTG 72 (259)
T ss_pred CCceEEEeeEEEEECCe--eeEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------ccCCCCCCCce
Confidence 35688999999999764 46765 9999999999999999999999999999999 76 3 589
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHHH-------------H
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELAQ-------------M 225 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~~-------------~ 225 (441)
+|.++|.............+..+.+.++...+|+. |+.+|+.+.... +..+.+ .
T Consensus 73 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 73 EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred EEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 99999975421100101112234444444455654 899998764321 111111 1
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
....||+||+||+++ +|+|| +++||+..+..+.++|++++.. +||+++|+ +....+.||++.+
T Consensus 152 ~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~-----~~~~~~~~d~i~~ 226 (259)
T PRK14274 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN-----MQQAARVSDQTAF 226 (259)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC-----HHHHHHhCCEEEE
Confidence 123489999988765 99999 9999999999999999998644 89999999 7777778999999
Q ss_pred EEecCCCCeeeCCh
Q 013511 294 VKLQKSGGVVSRNS 307 (441)
Q Consensus 294 l~l~~~g~vv~~~~ 307 (441)
+ ++|.++..++
T Consensus 227 l---~~G~i~~~g~ 237 (259)
T PRK14274 227 F---YMGELVECND 237 (259)
T ss_pred E---ECCEEEEECC
Confidence 8 8899887765
No 151
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-24 Score=209.32 Aligned_cols=186 Identities=16% Similarity=0.187 Sum_probs=137.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~ 171 (441)
.+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++| .+|+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~ 80 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFD--VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM------------NDTIDGCRVTGK 80 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEE--EEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------cccccCCCCceE
Confidence 3478889999999754 46765 9999999999999999999999999999999 764 8999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------HHHHH-------------HH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------VKELA-------------QM 225 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------~~~l~-------------~~ 225 (441)
|.++|.............+..+.+.++...+|. .|+.+|+.+.... +..+. +.
T Consensus 81 I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (267)
T PRK14235 81 ITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHE 159 (267)
T ss_pred EEECCEECcccccchHHHhhceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 999997542110011111223444444334565 4899998764210 11111 11
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
....||+||+||+++ +|+|| +++||+..++.+.++|+++... +||+++|+ +......||++.+
T Consensus 160 ~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~-----~~~~~~~~d~v~~ 234 (267)
T PRK14235 160 PGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHS-----MQQAARVSQRTAF 234 (267)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcC-----HHHHHhhCCEEEE
Confidence 234589999998765 99999 9999999999999999988544 89999999 7777678899988
Q ss_pred EEecCCCCeeeCCh
Q 013511 294 VKLQKSGGVVSRNS 307 (441)
Q Consensus 294 l~l~~~g~vv~~~~ 307 (441)
+ +.|.++..+.
T Consensus 235 l---~~G~i~~~g~ 245 (267)
T PRK14235 235 F---HLGNLVEVGD 245 (267)
T ss_pred E---ECCEEEEeCC
Confidence 8 7888887765
No 152
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.3e-24 Score=210.96 Aligned_cols=184 Identities=17% Similarity=0.221 Sum_probs=134.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|+++.|++.+ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 1 ml~~~~l~~~~~~~~-~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 65 (274)
T PRK13644 1 MIRLENVSYSYPDGT-PALEN--INLVIKKGEYIGIIGKNGSGKSTLALHLNGL------------LRPQKGKVLVSGID 65 (274)
T ss_pred CEEEEEEEEEcCCCC-ceeee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEE
Confidence 455677888885322 36765 9999999999999999999999999999999 99999999999975
Q ss_pred eeeecc-CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 179 AATPIE-LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
...... .......++.++.+... +...|+.+|+.+.... +.+ ..+.....||+||+||
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 144 (274)
T PRK13644 66 TGDFSKLQGIRKLVGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQC 144 (274)
T ss_pred CCccccHHHHHhheEEEEEChhhh-cccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHH
Confidence 432110 11112233444443222 3447999998764321 111 1123345699999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+++ +|+|| ++++|+.++..+.+++++++. .+||+++|+ +... ..||++.++ +.|+++.
T Consensus 145 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~-----~~~~-~~~d~v~~l---~~G~i~~ 215 (274)
T PRK13644 145 VALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN-----LEEL-HDADRIIVM---DRGKIVL 215 (274)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHH-hhCCEEEEE---ECCEEEE
Confidence 775 99999 999999999999999988753 399999999 6665 459999998 8898887
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 216 ~g~ 218 (274)
T PRK13644 216 EGE 218 (274)
T ss_pred ECC
Confidence 665
No 153
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.9e-24 Score=216.13 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=148.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|+++...++++ +||++++||+++|+|++|||||||+.+|+|. +||+||+|+++|..
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~--~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~------------~~~~~G~i~~~g~~ 401 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKN--FNLTLAQGEKVAILGRSGSGKSTLLQLLAGA------------WDPQQGSITLNGVE 401 (573)
T ss_pred eeeeccceeecCCCccchhhc--cceeecCCCeEEEECCCCCCHHHHHHHHHhc------------cCCCCCeeeECCcC
Confidence 678999999999987788976 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~~~-----------~~~ls~g 233 (441)
.....+..+ ++.+.+..|..++|. .|+++|+.+.... +.++.... .++||||
T Consensus 402 ~~~l~~~~~--~e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 402 IASLDEQAL--RETISVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred hhhCChhhH--HHHHhhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 654433222 233444455555554 5899998764211 12222222 2459999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC-CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK-ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~-~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
++||.++ +|+|| |.+||+...+.+++++.+.. ..+++++||. +... +.+|+|.++ ++|.
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHr-----L~~l-e~~drIivl---~~Gk 549 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHR-----LRGL-ERMDRIIVL---DNGK 549 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecc-----cccH-hhcCEEEEE---ECCe
Confidence 9998775 99999 99999998888877776654 4599999999 5444 467999999 9999
Q ss_pred eeeCChHHHHHHHHHHHHHH
Q 013511 302 VVSRNSKVRQKARSYRIREY 321 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~y 321 (441)
+++.+....-..++..+++.
T Consensus 550 iie~G~~~~Ll~~~g~~~~l 569 (573)
T COG4987 550 IIEEGTHAELLANNGRYKRL 569 (573)
T ss_pred eeecCCHHhhhccccHHHHH
Confidence 99988754433344444443
No 154
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-24 Score=203.06 Aligned_cols=173 Identities=20% Similarity=0.268 Sum_probs=129.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.. . ++||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~---~---~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl------------~~~~~G~i~~~g~~~~~ 64 (211)
T cd03298 3 LDKIRFSYGEQP---M---HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF------------ETPQSGRVLINGVDVTA 64 (211)
T ss_pred EEeEEEEeCCEe---c---ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEcCc
Confidence 456666665431 1 38999999999999999999999999999999 99999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
. . . .+..+.+.++...+|+..|+.+|+.+... .+.. ..+.....||+|++||+++
T Consensus 65 ~-~-~--~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia 140 (211)
T cd03298 65 A-P-P--ADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALA 140 (211)
T ss_pred C-C-H--hHccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHH
Confidence 1 1 1 11234444555567888899999875321 1111 1123345699999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++ ++|.++.
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~~~~d~i~~l---~~G~i~~ 209 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ-----PEDAKRLAQRVVFL---DNGRIAA 209 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHhhhCEEEEE---ECCEEee
Confidence 99999 999999999999999998742 389999999 77776788999888 7777654
No 155
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.7e-24 Score=210.88 Aligned_cols=187 Identities=17% Similarity=0.273 Sum_probs=138.6
Q ss_pred CCchhHHHHHHHHhhhh----hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 97 TPMVSYVNVNAVLEGRR----NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~----~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
++|+++.|+++.|+..+ ..++++ +||++.+|++++|+|+||||||||+++|+|+ ++|.+|+|
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i 67 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLALDD--VNLEVKKGEFLVILGRNGSGKSTIAKHMNAL------------LIPSEGKV 67 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCcceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceE
Confidence 46788999999996421 247765 9999999999999999999999999999999 99999999
Q ss_pred cCCceeeeeecc-CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhc
Q 013511 173 TIPGCIAATPIE-LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFN 231 (441)
Q Consensus 173 ~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls 231 (441)
.++|........ .......++.++.+...+++ .++.+|+.+.... +.. +.+.....||
T Consensus 68 ~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS 146 (280)
T PRK13633 68 YVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLS 146 (280)
T ss_pred EECCEeccccccHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCC
Confidence 999975432110 11122234444544333443 5788887664211 111 1223345699
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ +|+|| +++||+..++.+.+++++++ ..+||+++|+ +..... ||++.++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~-----~~~~~~-~d~v~~l--- 217 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY-----MEEAVE-ADRIIVM--- 217 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----hHHHhc-CCEEEEE---
Confidence 999998775 99999 99999999999999999874 2389999999 776654 8999998
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|.++..++
T Consensus 218 ~~G~i~~~g~ 227 (280)
T PRK13633 218 DSGKVVMEGT 227 (280)
T ss_pred ECCEEEEecC
Confidence 8888887665
No 156
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-24 Score=206.53 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=134.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i~ 173 (441)
++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++| .+|+|.
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~~~~~~G~i~ 66 (250)
T PRK14240 3 KISVKDLDLFYGDF--QALKK--INLDIEENQVTALIGPSGCGKSTFLRTLNRM------------NDLIPSVKIEGEVL 66 (250)
T ss_pred eEEEEEEEEEECCc--eeeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccccCCCCCceEEE
Confidence 35567788888654 36655 9999999999999999999999999999998 652 689999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HH----HHH-------------HHHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VK----ELA-------------QMLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~----~l~-------------~~~~~ 228 (441)
++|.............+..+.+.++...++. .|+.+|+.+.... .. ++. +....
T Consensus 67 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14240 67 LDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSAL 145 (250)
T ss_pred ECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCC
Confidence 9997543210000011223444444445666 7999998764311 11 111 11223
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+||+||+++ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +....+.++++.++
T Consensus 146 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~-----~~~~~~~~d~v~~l-- 218 (250)
T PRK14240 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN-----MQQASRISDKTAFF-- 218 (250)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeC-----HHHHHhhCCEEEEE--
Confidence 489999988765 99999 9999999999999999988544 89999999 77777789999888
Q ss_pred cCCCCeeeCCh
Q 013511 297 QKSGGVVSRNS 307 (441)
Q Consensus 297 ~~~g~vv~~~~ 307 (441)
++|+++..+.
T Consensus 219 -~~G~i~~~~~ 228 (250)
T PRK14240 219 -LNGEIVEFGD 228 (250)
T ss_pred -ECCEEEEeCC
Confidence 8898887765
No 157
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=2.4e-24 Score=204.21 Aligned_cols=195 Identities=19% Similarity=0.284 Sum_probs=141.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. . . ++||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~--~--~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~ 62 (232)
T PRK10771 1 MLKLTDITWLYHHL--P--M--RFDLTVERGERVAILGPSGAGKSTLLNLIAGF------------LTPASGSLTLNGQD 62 (232)
T ss_pred CeEEEEEEEEECCc--c--c--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCee
Confidence 35567777777642 1 1 38999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHH---------HHHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKE---------LAQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~---------l~~~~~~~ls~g~~~r~ 238 (441)
.... . . ....+.+.++...+++.+|+.+|+.+... .+.+ ..+.....||+||+||+
T Consensus 63 ~~~~-~-~--~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 138 (232)
T PRK10771 63 HTTT-P-P--SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRV 138 (232)
T ss_pred cCcC-C-h--hhccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHH
Confidence 4221 1 1 12334555555567888899999875311 0111 12233346999999887
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| ++++|+.+++.+.++++++.. .+||+++|+ +......|+++.++ ++|.++.
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~g~i~~ 210 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS-----LEDAARIAPRSLVV---ADGRIAW 210 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHhCCEEEEE---ECCEEEE
Confidence 65 99999 999999999999999988742 389999999 77666778999888 7888887
Q ss_pred CChHHHHHHHHHHHHHHhcC
Q 013511 305 RNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 305 ~~~~~~~~~r~~~~~~yf~g 324 (441)
.++.... .+...+.+.|.+
T Consensus 211 ~g~~~~~-~~~~~~~~~~~~ 229 (232)
T PRK10771 211 DGPTDEL-LSGKASASALLG 229 (232)
T ss_pred eCCHHHH-HhChhHHHHhhc
Confidence 7653221 123344555544
No 158
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.4e-24 Score=209.13 Aligned_cols=204 Identities=16% Similarity=0.222 Sum_probs=144.3
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G 170 (441)
..+|+++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ +. |.+|
T Consensus 36 ~~~~l~i~~l~~~~~~~--~il~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~~~~~~p~~G 99 (285)
T PRK14254 36 GETVIEARDLNVFYGDE--QALDD--VSMDIPENQVTAMIGPSGCGKSTFLRCINRM------------NDLIDAARVEG 99 (285)
T ss_pred CCceEEEEEEEEEECCE--eeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCcccCCCCce
Confidence 35688999999999764 46765 9999999999999999999999999999998 76 6899
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHHHH-------------HHHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKELA-------------QMLE 227 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~l~-------------~~~~ 227 (441)
+|.++|................+.+.++...+|+. |+.+|+.+... .+..+. +...
T Consensus 100 ~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 178 (285)
T PRK14254 100 ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSG 178 (285)
T ss_pred EEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCc
Confidence 99999975421100111112234444444345664 89999876421 111111 2223
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE-EE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD-VV 294 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~-vl 294 (441)
..||+||+||+++ +|+|| +++||+..++.+.++|+++..+ +||+++|+ +..+.+.++++. ++
T Consensus 179 ~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~-----~~~i~~~~dri~v~l 253 (285)
T PRK14254 179 LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN-----MQQAARISDKTAVFL 253 (285)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHhhcCEEEEEe
Confidence 4699999998765 99999 9999999999999999998544 89999999 777777889864 45
Q ss_pred EecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 295 KLQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 295 ~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
++|+++..++... .......+++||..
T Consensus 254 ---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 282 (285)
T PRK14254 254 ---TGGELVEFDDTDKIFENPESQRVEDYITG 282 (285)
T ss_pred ---eCCEEEEeCCHHHHHhCcCCHHHHHHhhh
Confidence 6788887665322 12223345566543
No 159
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.1e-24 Score=211.65 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=136.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++++|+++.|++.+ .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~~-~~l~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g~~ 65 (275)
T PRK13639 1 ILETRDLKYSYPDGT-EALKG--INFKAEKGEMVALLGPNGAGKSTLFLHFNGI------------LKPTSGEVLIKGEP 65 (275)
T ss_pred CEEEEEEEEEeCCCC-eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEE
Confidence 355677788885322 36665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccC--cCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccc
Q 013511 179 AATPIEL--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~ 236 (441)
+...... ......++.++.+...++ ..|+.+|+.+.... +.+ +.+.....||+||+|
T Consensus 66 ~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~q 144 (275)
T PRK13639 66 IKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKK 144 (275)
T ss_pred CccccchHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHH
Confidence 4211110 111223344444322334 46899998764211 111 123344669999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+.+ +|+|| ++++|+..+..+.++++++.. .+||+++|+ +....+.||++.++ ++|.++
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~-----~~~~~~~~d~i~~l---~~G~i~ 216 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD-----VDLVPVYADKVYVM---SDGKII 216 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 8765 99999 999999999999999998853 389999999 77777789999999 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 217 ~~g~ 220 (275)
T PRK13639 217 KEGT 220 (275)
T ss_pred EeCC
Confidence 7765
No 160
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.5e-24 Score=206.41 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=137.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~i 172 (441)
+|+++.|+++.|+.. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++ |.+|+|
T Consensus 3 ~~l~~~~l~~~~~~~--~~l~~--~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~p~~~~~G~v 66 (251)
T PRK14251 3 NIISAKDVHLSYGNY--EALHG--ISLDFEEKELTALIGPSGCGKSTFLRCLNRM------------NDDIENIKITGEI 66 (251)
T ss_pred ceEEEEeeEEEECCe--eeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc------------cccccCCCcceEE
Confidence 367788999888754 46665 9999999999999999999999999999998 76 479999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-------------HHHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-------------AQMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-------------~~~~~ 227 (441)
.++|................+.+.++...+|. .|+.+|+.+.... +..+ .+...
T Consensus 67 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14251 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA 145 (251)
T ss_pred EECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh
Confidence 99997542111110111233444444445564 6999998764211 1111 12233
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.++++.++
T Consensus 146 ~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~-----~~~~~~~~d~i~~l- 219 (251)
T PRK14251 146 QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN-----LQQAGRISDQTAFL- 219 (251)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECC-----HHHHHhhcCEEEEE-
Confidence 4689999988765 99999 999999999999999998753 389999999 77777778999888
Q ss_pred ecCCCCeeeCChH
Q 013511 296 LQKSGGVVSRNSK 308 (441)
Q Consensus 296 l~~~g~vv~~~~~ 308 (441)
+.|+++..++.
T Consensus 220 --~~G~i~~~~~~ 230 (251)
T PRK14251 220 --MNGDLIEAGPT 230 (251)
T ss_pred --ECCEEEEeCCH
Confidence 88888877653
No 161
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-24 Score=206.17 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=136.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc--C---CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD--I---GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld--p---~~G~i 172 (441)
+|++++|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ .+ | .+|+|
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~i 67 (252)
T PRK14255 4 KIITSSDVHLFYGKF--EALKG--IDLDFNQNEITALIGPSGCGKSTYLRTLNRM------------NDLIPGVTITGNV 67 (252)
T ss_pred ceEEEEeEEEEECCe--eEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cccCCCCCcccEE
Confidence 477888999988753 46765 9999999999999999999999999999997 54 4 48999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------H-HH---H-------------HHHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------V-KE---L-------------AQMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~-~~---l-------------~~~~~ 227 (441)
.++|................+.+.++...+|+ .|+.+|+.+.... . .. . .+...
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 146 (252)
T PRK14255 68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146 (252)
T ss_pred EEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCc
Confidence 99997542210111111223444444445566 6999998764211 0 01 0 11122
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| +++||+..++.+.++++++..+ +||+++|+ +....+.||++.++
T Consensus 147 ~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~-----~~~~~~~~d~i~~l- 220 (252)
T PRK14255 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS-----MHQASRISDKTAFF- 220 (252)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECC-----HHHHHHhCCEEEEE-
Confidence 3589999988775 99999 9999999999999999888543 89999999 77776789999998
Q ss_pred ecCCCCeeeCChH
Q 013511 296 LQKSGGVVSRNSK 308 (441)
Q Consensus 296 l~~~g~vv~~~~~ 308 (441)
++|.++..++.
T Consensus 221 --~~G~i~~~~~~ 231 (252)
T PRK14255 221 --LTGNLIEFADT 231 (252)
T ss_pred --ECCEEEEeCCH
Confidence 88888877653
No 162
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=2.7e-24 Score=198.29 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=129.7
Q ss_pred hhHHHHHHHHhhh----hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCccc
Q 013511 100 VSYVNVNAVLEGR----RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAIT 173 (441)
Q Consensus 100 l~~~nl~~~~~~~----~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~ 173 (441)
+++.|+++.|+.. ...++++ ++|++.+|++++|+||||||||||+++|+|+ + +|.+|+|.
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~--~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl------------~~~~~~~G~i~ 69 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKN--VSGKAKPGELTAIMGPSGAGKSTLLNALAGR------------RTGLGVSGEVL 69 (194)
T ss_pred EEEEeeEEEEecCCCcccccceec--ceEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCceEEE
Confidence 3456777777542 1246665 9999999999999999999999999999999 8 99999999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEE
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVI 243 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIl 243 (441)
++|..... . .....+.+.++...+++..|+.+|+.+.... ..||+|++||+.+ +|+
T Consensus 70 ~~g~~~~~---~--~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~---------~~LS~G~~qrv~laral~~~p~illl 135 (194)
T cd03213 70 INGRPLDK---R--SFRKIIGYVPQDDILHPTLTVRETLMFAAKL---------RGLSGGERKRVSIALELVSNPSLLFL 135 (194)
T ss_pred ECCEeCch---H--hhhheEEEccCcccCCCCCcHHHHHHHHHHh---------ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99975432 1 1222344444444677788999988764321 1799999988765 999
Q ss_pred eC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHH-HHhcCCCCeEEEEecCCCCeee
Q 013511 244 NT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLR-DVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 244 DE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~-~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|| ++++|...++.+.++++++.. .++|+++|+ +. ...+.+|++.++ ++|.++.
T Consensus 136 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~-----~~~~~~~~~d~v~~l---~~G~i~~ 192 (194)
T cd03213 136 DEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ-----PSSEIFELFDKLLLL---SQGRVIY 192 (194)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----chHHHHHhcCEEEEE---eCCEEEe
Confidence 99 999999999999999998753 389999999 54 455578999888 7777654
No 163
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.9e-24 Score=195.61 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=119.7
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
.|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|......
T Consensus 4 ~~l~~~~~~~--~~l~~--~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~~ 67 (173)
T cd03230 4 RNLSKRYGKK--TALDD--ISLTVEKGEIYGLLGPNGAGKTTLIKIILGL------------LKPDSGEIKVLGKDIKKE 67 (173)
T ss_pred EEEEEEECCe--eeeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEEcccc
Confidence 4455555443 35655 9999999999999999999999999999999 899999999999754321
Q ss_pred ccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCCc
Q 013511 183 IELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIEG 251 (441)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~ 251 (441)
. . .....+.+.++...+++..|+.+|+. ||+||+||+++ +|+|| ++++|+
T Consensus 68 ~-~--~~~~~i~~~~q~~~~~~~~tv~~~~~----------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 68 P-E--EVKRRIGYLPEEPSLYENLTVRENLK----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred h-H--hhhccEEEEecCCccccCCcHHHHhh----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 1 1 11233444444445677778888764 78888877654 99999 999999
Q ss_pred hhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 252 VGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 252 ~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
..++.+.++++++.. .++|+++|+ .......++++.++ ++|+
T Consensus 129 ~~~~~l~~~l~~~~~~g~tiii~th~-----~~~~~~~~d~i~~l---~~g~ 172 (173)
T cd03230 129 ESRREFWELLRELKKEGKTILLSSHI-----LEEAERLCDRVAIL---NNGR 172 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCC-----HHHHHHhCCEEEEE---eCCC
Confidence 999999999998853 489999999 66665678998888 6654
No 164
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.7e-24 Score=206.34 Aligned_cols=182 Identities=18% Similarity=0.219 Sum_probs=135.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 66 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKD--ISVKFEGGAIYTIVGPSGAGKSTLIKLINRL------------IDPTEGSILIDGVD 66 (241)
T ss_pred eEEEEeEEEEeCCe--eeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEE
Confidence 46677888888654 36655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-------HHHH----------HHHHHHHHhccCccceeee-
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------LVKE----------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------~~~~----------l~~~~~~~ls~g~~~r~~~- 240 (441)
........ ....+.+.++...+|+ .|+.+|+.+... .+.. +.+.....||+||+||+.+
T Consensus 67 i~~~~~~~--~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 67 IKTIDVID--LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred hhhcChHH--hhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 43211111 1223444444445565 588888765321 1111 1223334699999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.||++.++ ++|.++..+.
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 215 (241)
T PRK14250 144 RTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN-----MEQAKRIGDYTAFL---NKGILVEYAK 215 (241)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc-----HHHHHHhCCEEEEE---eCCEEEEeCC
Confidence 99999 99999999999999998874 2489999999 77766789999998 8888887665
No 165
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=7.3e-24 Score=184.30 Aligned_cols=184 Identities=17% Similarity=0.177 Sum_probs=139.7
Q ss_pred CchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 98 PMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.+++++++++..+... ..++++ +++.+++||.++|+||+|||||||+-+|+|+ -+|++|+|.+.
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~--V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL------------d~~ssGeV~l~ 70 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKG--VELVVKRGETVAIVGPSGSGKSTLLAVLAGL------------DDPSSGEVRLL 70 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeec--ceEEecCCceEEEEcCCCCcHHhHHHHHhcC------------CCCCCceEEEc
Confidence 3678899999887643 345655 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHHH-----------HHH---------HHHHHHHhccC
Q 013511 176 GCIAATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVLV-----------KEL---------AQMLERQFNGN 233 (441)
Q Consensus 176 G~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~-----------~~l---------~~~~~~~ls~g 233 (441)
|+......++... ....+.|.++...+++++|..||+.+...+- .++ ...++.+||+|
T Consensus 71 G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGG 150 (228)
T COG4181 71 GQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGG 150 (228)
T ss_pred CcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCch
Confidence 9877544332111 1233555666667899999999998765431 111 13456789999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
++||+++ ++-|| |+.||...-+.+.+++-.++.+ +.|++||| -.- ..-|+|..-+ .+
T Consensus 151 EQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD-----~~L-A~Rc~R~~r~---~~ 221 (228)
T COG4181 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHD-----PQL-AARCDRQLRL---RS 221 (228)
T ss_pred HHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCC-----HHH-HHhhhheeee---ec
Confidence 9999876 99999 9999998888888888777643 88889999 222 2347776666 78
Q ss_pred CCeee
Q 013511 300 GGVVS 304 (441)
Q Consensus 300 g~vv~ 304 (441)
|++++
T Consensus 222 G~l~~ 226 (228)
T COG4181 222 GRLVE 226 (228)
T ss_pred ceecc
Confidence 87764
No 166
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.4e-24 Score=209.30 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=138.0
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~ 171 (441)
.+++++.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ .+ |++|+
T Consensus 37 ~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl------------~~~~p~~~~~G~ 100 (286)
T PRK14275 37 KPHVVAKNFSIYYGEF--EAVKK--VNADILSKYVTAIIGPSGCGKSTFLRAINRM------------NDLIPSCHTTGA 100 (286)
T ss_pred ceEEEEeeeEEEECCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cccCCCCCCceE
Confidence 4567888999888754 36665 9999999999999999999999999999997 54 48999
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-------------HHHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-------------AQML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-------------~~~~ 226 (441)
|.++|.............+..+.+.++...+|+. |+.+|+.+.... +..+ .+..
T Consensus 101 I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 179 (286)
T PRK14275 101 LMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKN 179 (286)
T ss_pred EEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCC
Confidence 9999975422111111112334444444456664 999998764321 1111 1222
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+||+||+.+ +|+|| +++||+..++.+.+++++++.. +||+++|+ +....+.||++.++
T Consensus 180 ~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~-----~~~~~~~~d~i~~L 254 (286)
T PRK14275 180 ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN-----MQQASRVSDYTMFF 254 (286)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHHhCCEEEEE
Confidence 35699999998775 99999 9999999999999999988644 89999999 77766789999988
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
+.|.++..++
T Consensus 255 ---~~G~i~~~g~ 264 (286)
T PRK14275 255 ---YEGVLVEHAP 264 (286)
T ss_pred ---ECCEEEEeCC
Confidence 7888887765
No 167
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=3.2e-24 Score=200.80 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=131.5
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeec
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPI 183 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~ 183 (441)
|++|+|++.. + + +||++.+ ++++|+||||||||||+++|+|+ ++|++|+|.++|.......
T Consensus 5 ~l~~~~~~~~--~--~--vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~~ 65 (214)
T cd03297 5 DIEKRLPDFT--L--K--IDFDLNE-EVTGIFGASGAGKSTLLRCIAGL------------EKPDGGTIVLNGTVLFDSR 65 (214)
T ss_pred eeeEecCCee--e--C--ceEEEcc-eeEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEeccccc
Confidence 8899998853 2 4 9999999 99999999999999999999999 9999999999997543111
Q ss_pred cC-cC-CCCCCCCcccceEEEecccCccCCHHHHHHH---------HHHH---------HHHHHHHhccCccceeee---
Q 013511 184 EL-PI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------VKEL---------AQMLERQFNGNAESRAAG--- 240 (441)
Q Consensus 184 ~~-~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~~~l---------~~~~~~~ls~g~~~r~~~--- 240 (441)
.. .. .....+.+.++...++...|+.+|+.+.... +.++ .+.....||+|++||+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a 145 (214)
T cd03297 66 KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARA 145 (214)
T ss_pred chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHH
Confidence 00 01 1123345555555677788999998764321 1111 122335699999988765
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+|+|| +++||+..++.+.++++++.. .+||+++|+ +......|+++.++ +.|.++..
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~~~ 213 (214)
T cd03297 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD-----LSEAEYLADRIVVM---EDGRLQYI 213 (214)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC-----HHHHHHhcCEEEEE---ECCEEEec
Confidence 99999 999999999999999988742 489999999 66666778999888 77877643
No 168
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4e-24 Score=204.75 Aligned_cols=184 Identities=14% Similarity=0.149 Sum_probs=136.5
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ .+| .+|+|
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~v 65 (249)
T PRK14253 2 NKFNIENLDLFYGEN--QALKS--INLPIPARQVTALIGPSGCGKSTLLRCLNRM------------NDLIEGVKITGKL 65 (249)
T ss_pred CeEEEeccEEEECCe--eeeec--ceEEecCCCEEEEECCCCCCHHHHHHHHHhh------------cccccCCCCceEE
Confidence 467788999988754 46765 9999999999999999999999999999999 775 58999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------H----HHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------V----KELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~----~~l~-------------~~~~ 227 (441)
.++|....... .....+..+.+.++...+|+ .|+.+|+.+.... . .... +...
T Consensus 66 ~~~g~~~~~~~-~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (249)
T PRK14253 66 TMDGEDIYGNI-DVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143 (249)
T ss_pred EECCEEccccc-chHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc
Confidence 99997542110 11111223444444445666 7899988754211 0 1111 1112
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+.+ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++
T Consensus 144 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~~~~d~i~~l- 217 (249)
T PRK14253 144 FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS-----MQQARRISDRTAFF- 217 (249)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC-----HHHHHHhCCEEEEE-
Confidence 3589999988765 99999 999999999999999999854 489999999 77777789999999
Q ss_pred ecCCCCeeeCCh
Q 013511 296 LQKSGGVVSRNS 307 (441)
Q Consensus 296 l~~~g~vv~~~~ 307 (441)
++|.++..++
T Consensus 218 --~~G~i~~~g~ 227 (249)
T PRK14253 218 --LMGELVEHDD 227 (249)
T ss_pred --ECCEEEEeCC
Confidence 8898887665
No 169
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.88 E-value=2.7e-24 Score=207.90 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=138.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
..++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g 68 (265)
T PRK10253 5 VARLRGEQLTLGYGKY--TVAEN--LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL------------MTPAHGHVWLDG 68 (265)
T ss_pred ccEEEEEEEEEEECCE--EEeee--cceEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCcEEEECC
Confidence 3467788888888754 46665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----------H----HHHH---------HHHHHHHHhcc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----------V----LVKE---------LAQMLERQFNG 232 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----------~----~~~~---------l~~~~~~~ls~ 232 (441)
............ ..+.+.++...+++..|+.+|+.+.. . .+.. +.++....||+
T Consensus 69 ~~~~~~~~~~~~--~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~ 146 (265)
T PRK10253 69 EHIQHYASKEVA--RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSG 146 (265)
T ss_pred EEhhhCCHHHHh--hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCh
Confidence 754221111111 22344444445667778888876521 0 1111 11233356999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|++||+.+ +|+|| ++++|+..++.+.++|+++.. .+||+++|+ +....+.||++.++ +
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~-----~~~~~~~~d~i~~l---~ 218 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD-----LNQACRYASHLIAL---R 218 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---E
Confidence 99988765 99999 999999999999999988742 389999999 77777889999998 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|+++..++
T Consensus 219 ~G~i~~~g~ 227 (265)
T PRK10253 219 EGKIVAQGA 227 (265)
T ss_pred CCEEEEeCC
Confidence 888887665
No 170
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.5e-24 Score=204.84 Aligned_cols=182 Identities=12% Similarity=0.158 Sum_probs=136.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc---CCCCcccCC
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD---IGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld---p~~G~i~~~ 175 (441)
+++++|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++ |.+|+|.++
T Consensus 2 ~~~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~G~i~~~ 65 (246)
T PRK14269 2 IAKTTNLNLFYGKK--QALFD--INMQIEQNKITALIGASGCGKSTFLRCFNRM------------NDKIAKIDGLVEIE 65 (246)
T ss_pred ceeeeeeEEEECCE--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCCceEEEEC
Confidence 45678888888753 46665 9999999999999999999999999999998 64 689999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------H----HHHHHH-------------HHHHH
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------L----VKELAQ-------------MLERQ 229 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~----~~~l~~-------------~~~~~ 229 (441)
|........... +..+.+.++...+|. .|+.+|+.+... . +.++.+ .....
T Consensus 66 g~~i~~~~~~~~--~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 142 (246)
T PRK14269 66 GKDVKNQDVVAL--RKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALA 142 (246)
T ss_pred CEecccCCHHHH--hhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCccc
Confidence 976532111111 223444444445665 699999876421 0 111111 12234
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
||+||+||+++ +|+|| ++++|+..+..+.++++++... +||+++|+ +....+.+|++.++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~-----~~~~~~~~d~i~~l--- 214 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN-----MQQGKRVADYTAFF--- 214 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHhhCcEEEEE---
Confidence 89999988765 99999 9999999999999999887544 89999999 77777789999998
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
+.|+++..+.
T Consensus 215 ~~G~i~~~g~ 224 (246)
T PRK14269 215 HLGELIEFGE 224 (246)
T ss_pred ECCEEEEECC
Confidence 8899887765
No 171
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.88 E-value=2.9e-24 Score=194.46 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=116.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+..++++ +++++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~~~~l~~--~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~ 68 (173)
T cd03246 3 VENVSFRYPGAEPPVLRN--VSFSIEPGESLAIIGPSGSGKSTLARLILGL------------LRPTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEcCCCCCcceee--eEEEECCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCeEEECCEEccc
Confidence 345666665422246655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD 250 (441)
...... ...+.+.++...+|+ .|+.+|+ ||+|++||+.+ +|+|| ++++|
T Consensus 69 ~~~~~~--~~~i~~~~q~~~~~~-~tv~~~l-----------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD 128 (173)
T cd03246 69 WDPNEL--GDHVGYLPQDDELFS-GSIAENI-----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLD 128 (173)
T ss_pred CCHHHH--HhheEEECCCCcccc-CcHHHHC-----------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccC
Confidence 111111 122333334334555 4777776 77888777654 99999 99999
Q ss_pred chhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 251 GVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+..++.+.+++++++. .+||+++|+ +... ..||++.++ ++|.
T Consensus 129 ~~~~~~l~~~l~~~~~~~~tii~~sh~-----~~~~-~~~d~v~~l---~~G~ 172 (173)
T cd03246 129 VEGERALNQAIAALKAAGATRIVIAHR-----PETL-ASADRILVL---EDGR 172 (173)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHH-HhCCEEEEE---ECCC
Confidence 9999999999988753 389999999 5544 468998888 5654
No 172
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.2e-24 Score=203.94 Aligned_cols=187 Identities=15% Similarity=0.154 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc--C---CCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD--I---GQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld--p---~~G~ 171 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++ | .+|+
T Consensus 4 ~~~i~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~ 67 (253)
T PRK14261 4 EIILSTKNLNLWYGEK--HALYD--ITISIPKNRVTALIGPSGCGKSTLLRCFNRM------------NDLIPGCRITGD 67 (253)
T ss_pred cceEEEeeeEEEECCe--eeeee--eEEEECCCcEEEEECCCCCCHHHHHHHHhcc------------ccCCCCCCcceE
Confidence 3578888999888754 46765 9999999999999999999999999999998 65 3 4899
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-------------HHHH
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-------------AQML 226 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-------------~~~~ 226 (441)
|.++|................+.+.++...+|. .|+.+|+.+.... +.++ .+..
T Consensus 68 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 146 (253)
T PRK14261 68 ILYNGENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS 146 (253)
T ss_pred EEECCEEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC
Confidence 999997543210011111223444444445666 4999998764321 1111 1122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+|++||+.+ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +....+.+|++.++
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~-----~~~~~~~~d~v~~l 221 (253)
T PRK14261 147 ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN-----MQQAARVSDYTGFM 221 (253)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcC-----HHHHHhhCCEEEEE
Confidence 34589999988765 99999 9999999999999999988543 89999999 77776789999988
Q ss_pred EecCCCCeeeCChH
Q 013511 295 KLQKSGGVVSRNSK 308 (441)
Q Consensus 295 ~l~~~g~vv~~~~~ 308 (441)
++|+++..++.
T Consensus 222 ---~~G~i~~~g~~ 232 (253)
T PRK14261 222 ---YLGKLIEFDKT 232 (253)
T ss_pred ---ECCEEEEcCCH
Confidence 88888876653
No 173
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2e-24 Score=210.60 Aligned_cols=188 Identities=20% Similarity=0.286 Sum_probs=137.8
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC---Cccc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ---GAIT 173 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~---G~i~ 173 (441)
.+|+++.|+++.|++....++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+ |+|.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~--v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~------------~~p~~g~~G~i~ 68 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALND--ISFSIPRGSWTALIGHNGSGKSTISKLINGL------------LLPDDNPNSKIT 68 (282)
T ss_pred CceEEEEEEEEEcCCCCccceee--EEEEEcCCCEEEEECCCCCcHHHHHHHHhcc------------cCCCCCCCcEEE
Confidence 34778888998886432246765 9999999999999999999999999999999 88987 8999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccC
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGN 233 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g 233 (441)
++|...............++.++.+. .++...|+.+|+.+.... +.++ .+.....||+|
T Consensus 69 i~g~~~~~~~~~~~~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G 147 (282)
T PRK13640 69 VDGITLTAKTVWDIREKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGG 147 (282)
T ss_pred ECCEECCcCCHHHHHhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHH
Confidence 99975422111111122334334331 245567999999764221 1111 12334569999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
++||+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +... ..||++.++ ++
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-----~~~~-~~~d~i~~l---~~ 218 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-----IDEA-NMADQVLVL---DD 218 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHH-HhCCEEEEE---EC
Confidence 9988765 99999 999999999999999988753 389999999 6655 368999988 89
Q ss_pred CCeeeCChH
Q 013511 300 GGVVSRNSK 308 (441)
Q Consensus 300 g~vv~~~~~ 308 (441)
|+++..++.
T Consensus 219 G~i~~~g~~ 227 (282)
T PRK13640 219 GKLLAQGSP 227 (282)
T ss_pred CEEEEeCCH
Confidence 998877653
No 174
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=3.9e-24 Score=212.32 Aligned_cols=204 Identities=15% Similarity=0.175 Sum_probs=146.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~i 172 (441)
.++++.|+++.|.+....++++ +||++.+|++++|+|+||||||||+++|+|+ .+ |.+|+|
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~--is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~------------~~~~~~~p~~G~I 144 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHD--LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL------------NDLIEGTSHEGEI 144 (329)
T ss_pred ceEEEEeeEEEecCCCceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccccCCCCCceEE
Confidence 4788889998886432346765 9999999999999999999999999999998 65 579999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~~ 227 (441)
.++|..+..........+..+.+.++...+| ..|+++|+.+.... ..... +...
T Consensus 145 ~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~ 223 (329)
T PRK14257 145 YFLGTNTRSKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAG 223 (329)
T ss_pred EECCEEccccccchHhhhccEEEEecCCccC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCc
Confidence 9999865321101111122344444433455 47999999864321 01111 1122
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+||+||+++ +|+|| +++||+...+.+.++|+++..+ +||+++|+ +..+.+.||++.++
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~-----l~~i~~~~Driivl- 297 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHS-----MAQAQRISDETVFF- 297 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE-
Confidence 3489999998876 99999 9999999999999999987654 99999999 88777779999999
Q ss_pred ecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 296 LQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 296 l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+.|.+++.+.... .......+.+|+.|
T Consensus 298 --~~G~i~e~g~~~~l~~~~~~~~~~~~~~~ 326 (329)
T PRK14257 298 --YQGWIEEAGETKTIFIHPKNKRTKDYISG 326 (329)
T ss_pred --ECCEEEEeCCHHHHhcCCCcHHHHHHhcc
Confidence 8999998876433 22233455666644
No 175
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.3e-24 Score=205.49 Aligned_cols=187 Identities=15% Similarity=0.179 Sum_probs=146.1
Q ss_pred hhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-C----CCCcc
Q 013511 100 VSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-I----GQGAI 172 (441)
Q Consensus 100 l~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-p----~~G~i 172 (441)
++++||+..|... ...++++ +||++++||+++|+|.+||||||+++.|+++ ++ | .+|+|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~--vs~~i~~GE~lgiVGESGsGKS~~~~aim~l------------lp~~~~~i~~G~i 67 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDG--VSFELKKGEILGIVGESGSGKSVLAKAIMGL------------LPKPNARIVGGEI 67 (316)
T ss_pred ceEeeeEEEEecCCccEEEEec--eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhc------------cCCCCCeEeeeEE
Confidence 3455666666442 2356765 9999999999999999999999999999999 76 3 46899
Q ss_pred cCCceeeeeeccCc---C-CCCCCCCcccceEEEecccCccCCHHHHHHH-------------------------HHHHH
Q 013511 173 TIPGCIAATPIELP---I-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------------------VKELA 223 (441)
Q Consensus 173 ~~~G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------------------~~~l~ 223 (441)
.++|..+.....+. + ..+.++.||.|...|.+.+++.+.+.-.... .++..
T Consensus 68 ~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~ 147 (316)
T COG0444 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL 147 (316)
T ss_pred EECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 99998765544332 2 2345678899888888888887654322111 01234
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
+.++.+|||||+||+.+ +|.|| |++||...+..+++++++++.+ ++|++||| |.-+.+.||
T Consensus 148 ~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHD-----l~vva~~aD 222 (316)
T COG0444 148 KSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHD-----LGVVAEIAD 222 (316)
T ss_pred hhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcc
Confidence 56677899999999876 99999 9999999999999999998742 99999999 988888999
Q ss_pred CeEEEEecCCCCeeeCChH
Q 013511 290 NVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 290 ~v~vl~l~~~g~vv~~~~~ 308 (441)
+|.|| ..|.+|+.++.
T Consensus 223 ri~VM---YaG~iVE~g~~ 238 (316)
T COG0444 223 RVAVM---YAGRIVEEGPV 238 (316)
T ss_pred eEEEE---ECcEEEEeCCH
Confidence 99999 99999999874
No 176
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6e-24 Score=206.21 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=139.3
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQ 169 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~ 169 (441)
+..+|++++|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ ++ |.+
T Consensus 21 ~~~~~l~~~nl~~~~~~~--~il~~--vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl------------~~~~~~~~~~ 84 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDK--QALFD--ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM------------NDLVDNCRIE 84 (272)
T ss_pred CCCcEEEEEEEEEEECCe--eEeee--EEEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------CCCccCCCCc
Confidence 345688899999999754 46665 9999999999999999999999999999999 76 479
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------H
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------Q 224 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~ 224 (441)
|+|.++|.............+..+.+.++...+|+. |+.+|+.+.... +.... +
T Consensus 85 G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 163 (272)
T PRK14236 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLH 163 (272)
T ss_pred eEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhh
Confidence 999999975422100111112334444444456665 999998764210 11111 1
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.....||+|++||+++ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +....+.||++.
T Consensus 164 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~-----~~~~~~~~d~i~ 238 (272)
T PRK14236 164 ENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHN-----MQQAARVSDYTA 238 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCC-----HHHHHhhCCEEE
Confidence 1224589999988775 99999 9999999999999999988544 88999999 777777899999
Q ss_pred EEEecCCCCeeeCCh
Q 013511 293 VVKLQKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l~~~g~vv~~~~ 307 (441)
++ ++|.++..++
T Consensus 239 ~l---~~G~i~~~g~ 250 (272)
T PRK14236 239 FM---YMGKLVEYGD 250 (272)
T ss_pred EE---ECCEEEecCC
Confidence 98 8888887665
No 177
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=4e-24 Score=206.90 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=138.6
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G 170 (441)
..+++++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +. |.+|
T Consensus 17 ~~~~l~~~nl~~~~~~~--~il~~--vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G 80 (267)
T PRK14237 17 EEIALSTKDLHVYYGKK--EAIKG--IDMQFEKNKITALIGPSGSGKSTYLRSLNRM------------NDTIDIARVTG 80 (267)
T ss_pred CCeEEEEeeEEEEECCe--eeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------cCccCCCCcce
Confidence 34478889999988654 46765 9999999999999999999999999999998 76 5799
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------H----HHHH-------------HH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------V----KELA-------------QM 225 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~----~~l~-------------~~ 225 (441)
+|.++|................+.+.++...+|. .|+.+|+.+.... . .++. +.
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 159 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHK 159 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcC
Confidence 9999997542110001111233444444445565 5999999764221 1 1111 11
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
....||+|++||+++ +|+|| +++||+..++.+.++|++++. .+||+++|+ +....+.||++.+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~-----~~~~~~~~d~i~~ 234 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHN-----MQQAARASDYTAF 234 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhcCEEEE
Confidence 223589999988765 99999 999999999999999998854 389999999 7777778999999
Q ss_pred EEecCCCCeeeCChH
Q 013511 294 VKLQKSGGVVSRNSK 308 (441)
Q Consensus 294 l~l~~~g~vv~~~~~ 308 (441)
+ +.|.++..++.
T Consensus 235 l---~~G~i~~~g~~ 246 (267)
T PRK14237 235 F---YLGDLIEYDKT 246 (267)
T ss_pred E---ECCEEEEeCCH
Confidence 9 88988877653
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.2e-24 Score=208.89 Aligned_cols=187 Identities=17% Similarity=0.235 Sum_probs=135.6
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++....++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~--isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~g 70 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKD--VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI------------EKVKSGEIFYNN 70 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECC
Confidence 45788899999997532236665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~ 236 (441)
...............++.++.+. .++...++.+|+.+.... +..+ .+.....||+|++|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 149 (269)
T PRK13648 71 QAITDDNFEKLRKHIGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQ 149 (269)
T ss_pred EECCcCCHHHHHhheeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHH
Confidence 75422111111122233333331 134556777777553211 1111 12233468999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +..... ||++.++ ++|.+
T Consensus 150 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~-----~~~~~~-~d~i~~l---~~G~i 220 (269)
T PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD-----LSEAME-ADHVIVM---NKGTV 220 (269)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----chHHhc-CCEEEEE---ECCEE
Confidence 8765 99999 999999999999999988742 389999999 665554 8999998 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..++
T Consensus 221 ~~~g~ 225 (269)
T PRK13648 221 YKEGT 225 (269)
T ss_pred EEecC
Confidence 87665
No 179
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.6e-24 Score=197.02 Aligned_cols=158 Identities=20% Similarity=0.236 Sum_probs=118.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (178)
T cd03229 3 LKNVSKRYGQK--TVLND--VSLNIEAGEIVALLGPSGSGKSTLLRCIAGL------------EEPDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEECCe--EEEee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEccc
Confidence 34555556543 35655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD 250 (441)
...........+.+.++...++...|+.+|+.+. ||+|++||+.+ +|+|| ++++|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD 132 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------LSGGQQQRVALARALAMDPDVLLLDEPTSALD 132 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 1100111123344444444567778888887653 77777776654 99999 99999
Q ss_pred chhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 251 GVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+.+++.+.++++++.. .++++++|+ +......+|++.++
T Consensus 133 ~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l 174 (178)
T cd03229 133 PITRREVRALLKSLQAQLGITVVLVTHD-----LDEAARLADRVVVL 174 (178)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE
Confidence 9999999999988753 489999999 66655578998887
No 180
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=2.6e-24 Score=206.80 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=142.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|++++|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~--~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~ 65 (255)
T PRK11231 2 TLRTENLTVGYGTK--RILND--LSLSLPTGKITALIGPNGCGKSTLLKCFARL------------LTPQSGTVFLGDKP 65 (255)
T ss_pred EEEEEeEEEEECCE--EEEee--eeeEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCCcEEEECCEE
Confidence 56677888888754 46665 9999999999999999999999999999999 89999999999974
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHH---------HHHHHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKEL---------AQMLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l---------~~~~~~~ls~g~ 234 (441)
......... ...+.+.++...+++..|+.+|+.+... .+..+ .+.....||+|+
T Consensus 66 ~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 143 (255)
T PRK11231 66 ISMLSSRQL--ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQ 143 (255)
T ss_pred hHHCCHHHH--hhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHH
Confidence 321111111 1223444444456667788888865310 11111 122334699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+++ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.|+++.++ ++|.
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~-----~~~~~~~~d~i~~l---~~G~ 215 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD-----LNQASRYCDHLVVL---ANGH 215 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----HHHHHHhcCEEEEE---ECCe
Confidence 988765 99999 999999999999999988743 389999999 77777789999998 8888
Q ss_pred eeeCChHHHHHHHHHHHHHHh
Q 013511 302 VVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf 322 (441)
++..+..... .....++++|
T Consensus 216 i~~~~~~~~~-~~~~~~~~~~ 235 (255)
T PRK11231 216 VMAQGTPEEV-MTPGLLRTVF 235 (255)
T ss_pred EEEEcCHHHh-cCHHHHHHHh
Confidence 8766543221 1234455655
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.88 E-value=1.1e-23 Score=203.32 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=146.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccC
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITI 174 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~ 174 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|+ +|+|.+
T Consensus 3 ~~l~~~nl~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~p~~~~~G~i~~ 66 (262)
T PRK09984 3 TIIRVEKLAKTFNQH--QALHA--VDLNIHHGEMVALLGPSGSGKSTLLRHLSGL------------ITGDKSAGSHIEL 66 (262)
T ss_pred cEEEEeeEEEEeCCe--EEEec--ceEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------CCCCCCCceEEEE
Confidence 578888999888754 46665 9999999999999999999999999999999 8775 599999
Q ss_pred Cceeeeeecc---CcCCCCCCCCcccceEEEecccCccCCHHHHHH-------------------HHHH---------HH
Q 013511 175 PGCIAATPIE---LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------------LVKE---------LA 223 (441)
Q Consensus 175 ~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------------~~~~---------l~ 223 (441)
+|........ ........+.+.++...+|+.+|+.+|+.+... .+.+ ..
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (262)
T PRK09984 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146 (262)
T ss_pred CCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 9975422110 000112234444455567788899999875310 0111 11
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
+.....||+|++||+.+ +|+|| +++||..+++.+.++|+++. ..+||+++|+ +....+.|+
T Consensus 147 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~-----~~~~~~~~d 221 (262)
T PRK09984 147 HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ-----VDYALRYCE 221 (262)
T ss_pred hCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCC
Confidence 22334589999988765 99999 99999999999999999885 2489999999 777677899
Q ss_pred CeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcCC
Q 013511 290 NVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGL 325 (441)
Q Consensus 290 ~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g~ 325 (441)
++.++ .+|.++..+.... .....+++.|.+.
T Consensus 222 ~i~~l---~~g~i~~~g~~~~--~~~~~~~~~~~~~ 252 (262)
T PRK09984 222 RIVAL---RQGHVFYDGSSQQ--FDNERFDHLYRSI 252 (262)
T ss_pred EEEEE---ECCEEEEeCCHHH--hccHHHHHHHhhh
Confidence 99998 7888877665332 2334556666553
No 182
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=5.2e-24 Score=196.08 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=127.2
Q ss_pred hhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCcccCC
Q 013511 100 VSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAITIP 175 (441)
Q Consensus 100 l~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~~~ 175 (441)
++++|+++.|++. ...++++ +||++.+|++++|+||||||||||+|+|+|+ . +|.+|+|.++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~~~G~i~~~ 69 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNN--ISGYVKPGTLTALMGESGAGKTTLLDVLAGR------------KTAGVITGEILIN 69 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEc--cEEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCCcceEEEEC
Confidence 4556777777541 1236655 9999999999999999999999999999997 4 4899999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT 245 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE 245 (441)
|.... .... ..+.+.++...++...|+.+|+.+.... ..||+|++||+.+ +|+||
T Consensus 70 g~~~~----~~~~--~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 70 GRPLD----KNFQ--RSTGYVEQQDVHSPNLTVREALRFSALL---------RGLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred CEehH----HHhh--hceEEecccCccccCCcHHHHHHHHHHH---------hcCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 97542 1111 2234444444577888999998764321 1799999988765 99999
Q ss_pred -CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHH-HHhcCCCCeEEEEecCC-CCeee
Q 013511 246 -MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLR-DVLKNRPNVDVVKLQKS-GGVVS 304 (441)
Q Consensus 246 -~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~-~~~~~~~~v~vl~l~~~-g~vv~ 304 (441)
++++|+..++.+.++++++.. .+||+++|+ +. ...+.+|++.++ ++ |.++.
T Consensus 135 P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~-----~~~~~~~~~d~i~~l---~~~g~i~~ 190 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQ-----PSASIFEKFDRLLLL---KRGGKTVY 190 (192)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcC-----ChHHHHhhCCEEEEE---cCCCeEEe
Confidence 999999999999999998753 489999999 55 245678998888 76 77664
No 183
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=6.2e-24 Score=198.87 Aligned_cols=172 Identities=18% Similarity=0.170 Sum_probs=132.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ +.|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g 72 (214)
T PRK13543 9 PPLLAAHALAFSRNEE--PVFGP--LDFHVDAGEALLVQGDNGAGKTTLLRVLAGL------------LHVESGQIQIDG 72 (214)
T ss_pred cceEEEeeEEEecCCc--eeeec--ceEEECCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCCeeEEECC
Confidence 3578899999999764 36655 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HHHH---------HHHHHHHhccCccceee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VKEL---------AQMLERQFNGNAESRAA 239 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~~l---------~~~~~~~ls~g~~~r~~ 239 (441)
..... .. ....+.+.++...+++..|+.+|+.++... ...+ .+.....||+|++||++
T Consensus 73 ~~i~~---~~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 147 (214)
T PRK13543 73 KTATR---GD--RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLA 147 (214)
T ss_pred EEccc---hh--hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHH
Confidence 75421 11 112344444445677778999998764321 1111 12333569999998876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+ +|+|| ++++|+..++.+.++++++.. .+||+++|+ +....+.|+++.++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~~~i~~l 210 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG-----AYAAPPVRTRMLTL 210 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----hhhhhhhcceEEEE
Confidence 5 99999 999999999999999987643 389999999 77777788988776
No 184
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=3.4e-24 Score=208.86 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=133.5
Q ss_pred hhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 100 VSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 100 l~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~p~~G~i~~~g 68 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFD--VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL------------HVPTQGSVRVDD 68 (280)
T ss_pred EEEEEEEEEcCCCCccccceeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECC
Confidence 45667777776421 236665 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeecc--C--cCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH----------HHHHHHHhc
Q 013511 177 CIAATPIE--L--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL----------AQMLERQFN 231 (441)
Q Consensus 177 ~~~~~~~~--~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l----------~~~~~~~ls 231 (441)
........ . ......++.++.+...++. .|+.+|+.+.... +..+ .+.....||
T Consensus 69 ~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 147 (280)
T PRK13649 69 TLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELS 147 (280)
T ss_pred EEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 75432110 0 1111223333332123444 5899998764221 1111 112234599
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
+||+||+.+ +|+|| +++||+..++.+.++|++++. .+||+++|+ +......||++.++ +
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l---~ 219 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL-----MDDVANYADFVYVL---E 219 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc-----HHHHHHhCCEEEEE---E
Confidence 999988765 99999 999999999999999998753 499999999 77776789999998 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|.++..++
T Consensus 220 ~G~i~~~g~ 228 (280)
T PRK13649 220 KGKLVLSGK 228 (280)
T ss_pred CCEEEEeCC
Confidence 888877654
No 185
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.5e-23 Score=192.92 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=146.6
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeec
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPI 183 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~ 183 (441)
|+.+++++. +++ ++|+...-.+++|.|++|||||||+|+|+|+ ..|++|.|.++|.......
T Consensus 5 ~~~~~lG~~---~l~---a~~~~p~~GvTAlFG~SGsGKTslin~IaGL------------~rPdeG~I~lngr~L~Ds~ 66 (352)
T COG4148 5 NFRQRLGNF---ALD---ANFTLPARGITALFGPSGSGKTSLINMIAGL------------TRPDEGRIELNGRVLVDAE 66 (352)
T ss_pred ehhhhcCce---EEE---EeccCCCCceEEEecCCCCChhhHHHHHhcc------------CCccccEEEECCEEeeccc
Confidence 455666664 333 5676666579999999999999999999999 9999999999998764432
Q ss_pred cC-cC-CCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHHHHHHHhccCccceeee-------
Q 013511 184 EL-PI-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQMLERQFNGNAESRAAG------- 240 (441)
Q Consensus 184 ~~-~~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~~~~~~ls~g~~~r~~~------- 240 (441)
.. .+ ..++.++|.+|+..+|+|+||+.|+.|+... ++.|.++++.+||||++||+++
T Consensus 67 k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~ 146 (352)
T COG4148 67 KGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA 146 (352)
T ss_pred CCcccChhhheeeeEeeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence 22 11 1234566777788999999999999987543 4567789999999999999987
Q ss_pred ---EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 ---MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 ---lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+++|| .+.||..-+.+++-.++++..+ -|+.++|. +++..+++|++.++ ++|.|...++.
T Consensus 147 P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS-----~~Ev~RLAd~vV~l---e~GkV~A~g~~ 213 (352)
T COG4148 147 PELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS-----LDEVLRLADRVVVL---ENGKVKASGPL 213 (352)
T ss_pred CCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecC-----HHHHHhhhheEEEe---cCCeEEecCcH
Confidence 99999 8999998888999999888754 68889999 99999999999999 99999888763
No 186
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.88 E-value=1.1e-23 Score=197.05 Aligned_cols=176 Identities=19% Similarity=0.282 Sum_probs=132.0
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++ .+. ++||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|....
T Consensus 2 ~~~~l~~~~~~----~~~--~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~ 63 (213)
T TIGR01277 2 ALDKVRYEYEH----LPM--EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF------------IEPASGSIKVNDQSHT 63 (213)
T ss_pred eEEeeeEEeCC----cce--eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEEcc
Confidence 34677777753 223 48999999999999999999999999999999 9999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHH---------HHHHHHHHHhccCccceeee
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVK---------ELAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~---------~l~~~~~~~ls~g~~~r~~~ 240 (441)
.. ... ...+.+.++...+|..+|+.+|+.+... .+. ++.+.....||+||+||+.+
T Consensus 64 ~~--~~~--~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~l 139 (213)
T TIGR01277 64 GL--APY--QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVAL 139 (213)
T ss_pred cC--Chh--ccceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHH
Confidence 21 111 2234455555567888899999875311 111 11223345699999988765
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|+|| ++++|..+++.+.++|+++. ..+||+++|+ +......+|++.++ +.|+++..+
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~-----~~~~~~~~d~v~~l---~~g~i~~~~ 211 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH-----LSDARAIASQIAVV---SQGKIKVVS 211 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHhhcCeEEEE---ECCeEEEec
Confidence 99999 99999999999999999874 3489999999 66666678999888 788877653
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.88 E-value=4.3e-24 Score=199.76 Aligned_cols=165 Identities=18% Similarity=0.188 Sum_probs=121.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|....
T Consensus 2 ~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~~- 64 (213)
T cd03235 2 VEDLTVSYGGH--PVLED--VSFEVKPGEFLAIVGPNGAGKSTLLKAILGL------------LKPTSGSIRVFGKPLE- 64 (213)
T ss_pred cccceeEECCE--Eeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCCEEEECCccHH-
Confidence 46788888653 36665 9999999999999999999999999999999 9999999999996431
Q ss_pred eccCcCCCCCCCCcccceEEEe--cccCccCCHHHHHH---------------HHHH---------HHHHHHHHhccCcc
Q 013511 182 PIELPIDPVEGIPLEMPLVYFF--GHATPSNNVELYKV---------------LVKE---------LAQMLERQFNGNAE 235 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~--g~~tv~en~~~~~~---------------~~~~---------l~~~~~~~ls~g~~ 235 (441)
... ..+.+.++...++ ...|+.+|+.+... .+.+ ..+.....||+||+
T Consensus 65 ----~~~--~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~ 138 (213)
T cd03235 65 ----KER--KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQ 138 (213)
T ss_pred ----HHH--hheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHH
Confidence 111 1233333322222 23688888765311 0111 11223356999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC-C-CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK-A-NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~-~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
||+.+ +|+|| +++||+..++.+.++++++. . .+||+++|+ +....+.||++.++
T Consensus 139 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~-----~~~~~~~~d~i~~l 205 (213)
T cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHD-----LGLVLEYFDRVLLL 205 (213)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE
Confidence 98765 99999 99999999999999999875 2 489999999 77776788998888
No 188
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.88 E-value=5.9e-24 Score=202.74 Aligned_cols=182 Identities=15% Similarity=0.158 Sum_probs=132.7
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCcccCCcee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAITIPGCI 178 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~~~G~~ 178 (441)
+++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ + .|.+|+|.++|..
T Consensus 2 ~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~G~i~~~g~~ 65 (243)
T TIGR01978 2 KIKDLHVSVEDK--EILKG--VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH------------PSYEVTSGTILFKGQD 65 (243)
T ss_pred eEeeEEEEECCE--EEEec--cceEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCcceEEECCEe
Confidence 356777777653 46665 9999999999999999999999999999997 5 6899999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------HHHH----------HHHHHH-H
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------VKEL----------AQMLER-Q 229 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------~~~l----------~~~~~~-~ 229 (441)
....... .....++.+.++...+++.+|+.+|+.+.... +.++ .+.... .
T Consensus 66 ~~~~~~~-~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (243)
T TIGR01978 66 LLELEPD-ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEG 144 (243)
T ss_pred cCCCCHH-HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccC
Confidence 4221110 11122344444445677888888887653211 1111 111122 3
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcC-CCCeEEEE
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKN-RPNVDVVK 295 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~-~~~v~vl~ 295 (441)
||+||+||+++ +|+|| +++||+..++.+.+++++++. .+||+++|+ +...... ||++.++
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~-----~~~~~~~~~d~i~~l- 218 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY-----QRLLNYIKPDYVHVL- 218 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEec-----HHHHHhhcCCeEEEE-
Confidence 99999998765 99999 999999999999999998853 489999999 7766666 7999888
Q ss_pred ecCCCCeeeCCh
Q 013511 296 LQKSGGVVSRNS 307 (441)
Q Consensus 296 l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 219 --~~G~i~~~g~ 228 (243)
T TIGR01978 219 --LDGRIVKSGD 228 (243)
T ss_pred --eCCEEEEecC
Confidence 7888877654
No 189
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.5e-24 Score=215.41 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=149.0
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++.+|+++.|++.. .++++ ++|++++|+.++|+|+||||||||+++|+|+ +.|++|+|.++|...
T Consensus 321 i~~~~l~~~y~~g~-~~l~~--l~~t~~~g~~talvG~SGaGKSTLl~lL~G~------------~~~~~G~I~vng~~l 385 (559)
T COG4988 321 ISLENLSFRYPDGK-PALSD--LNLTIKAGQLTALVGASGAGKSTLLNLLLGF------------LAPTQGEIRVNGIDL 385 (559)
T ss_pred eeecceEEecCCCC-cccCC--ceeEecCCcEEEEECCCCCCHHHHHHHHhCc------------CCCCCceEEECCccc
Confidence 44569999998864 56654 9999999999999999999999999999999 999999999999876
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----HHH---------HHHH------HH----HHhccCcc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----VKE---------LAQM------LE----RQFNGNAE 235 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----~~~---------l~~~------~~----~~ls~g~~ 235 (441)
.......+ +..+.+..+.+++|. -|++||+.++... +.+ +.+. .. ..||+||+
T Consensus 386 ~~l~~~~~--~k~i~~v~Q~p~lf~-gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~ 462 (559)
T COG4988 386 RDLSPEAW--RKQISWVSQNPYLFA-GTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA 462 (559)
T ss_pred cccCHHHH--HhHeeeeCCCCcccc-ccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence 54433322 333444444445555 5999999887431 111 1111 11 23899999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+++ +++|| |++||.+..+.+.+.|.++..+ +++++||+ +... +.+|+|.++ ++|+++
T Consensus 463 QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHr-----l~~~-~~~D~I~vl---d~G~l~ 533 (559)
T COG4988 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR-----LEDA-ADADRIVVL---DNGRLV 533 (559)
T ss_pred HHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcC-----hHHH-hcCCEEEEe---cCCcee
Confidence 99775 99999 9999999999999999888655 99999999 6655 478999999 999999
Q ss_pred eCChHHHHHHHHHHHHHHh
Q 013511 304 SRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 304 ~~~~~~~~~~r~~~~~~yf 322 (441)
+.+...+-..+...+.++|
T Consensus 534 ~~g~~~~L~~~~~~y~~l~ 552 (559)
T COG4988 534 EQGTHEELSEKQGLYANLL 552 (559)
T ss_pred ccCCHHHHhhcCcHHHHHH
Confidence 9998666544555555555
No 190
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=4.6e-24 Score=202.38 Aligned_cols=180 Identities=22% Similarity=0.326 Sum_probs=129.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+..++++ ++|++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~~~~l~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~ 68 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRD--ISLDIPAGETVALVGPSGSGKSTLVNLIPRF------------YDVDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEeCCCCccceee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccCCCCEEEECCEEhhh
Confidence 455666665432235655 9999999999999999999999999999999 89999999999964422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHH-----------HHHHhccCccc
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQM-----------LERQFNGNAES 236 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~-----------~~~~ls~g~~~ 236 (441)
...... ...+.+.++...+++ .|+.+|+.++.. .. .++.+. ....||+|++|
T Consensus 69 ~~~~~~--~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q 145 (234)
T cd03251 69 YTLASL--RRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ 145 (234)
T ss_pred CCHHHH--HhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence 111111 123444444445665 589888876421 11 111111 12358999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|+.+ +|+|| +++||+..++.+.++++++... +||+++|+ +..... ||++.++ ++|.++.
T Consensus 146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~~-~d~v~~l---~~G~i~~ 216 (234)
T cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHR-----LSTIEN-ADRIVVL---EDGKIVE 216 (234)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC-----HHHHhh-CCEEEEe---cCCeEee
Confidence 8765 99999 9999999999999999988544 89999999 665544 8999988 8898877
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 217 ~~~ 219 (234)
T cd03251 217 RGT 219 (234)
T ss_pred eCC
Confidence 654
No 191
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.2e-24 Score=205.24 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=147.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G 170 (441)
..+++++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++| .+|
T Consensus 18 ~~~~l~i~nl~~~~~~~--~il~~--vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~p~~~~~~~G 81 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGK--TVLDQ--VSMGFPARAVTSLMGPTGSGKTTFLRTLNRM------------NDKVSGYRYSG 81 (276)
T ss_pred cCcEEEEeeEEEEECCE--EEeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------CCcCCCCCCce
Confidence 35688999999999764 46665 9999999999999999999999999999999 775 699
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QM 225 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~ 225 (441)
+|.++|..+.... ........+.+.++...+|+ .|+.+|+.+.... ...+. +.
T Consensus 82 ~i~~~g~~i~~~~-~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 159 (276)
T PRK14271 82 DVLLGGRSIFNYR-DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSD 159 (276)
T ss_pred EEEECCEEccccc-hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhC
Confidence 9999997543211 11111223344444445566 7999998764210 01111 11
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
....||+||+||+.+ +|+|| ++++|...++.+.+++++++.. +||+++|+ +......+|++.+
T Consensus 160 ~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~-----~~~~~~~~dri~~ 234 (276)
T PRK14271 160 SPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN-----LAQAARISDRAAL 234 (276)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEE
Confidence 134589999988765 99999 9999999999999999988543 89999999 7777778999999
Q ss_pred EEecCCCCeeeCChHHH--HHHHHHHHHHHhcCCCCCC
Q 013511 294 VKLQKSGGVVSRNSKVR--QKARSYRIREYFYGLTNDL 329 (441)
Q Consensus 294 l~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g~~~~l 329 (441)
+ +.|.++..++... ..........|+++..+++
T Consensus 235 l---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (276)
T PRK14271 235 F---FDGRLVEEGPTEQLFSSPKHAETARYVAGLSGDV 269 (276)
T ss_pred E---ECCEEEEeCCHHHHHhCcCcHHHHHHHhhcCCcc
Confidence 9 8888887665322 1112233456666644443
No 192
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.88 E-value=3.9e-24 Score=194.49 Aligned_cols=162 Identities=22% Similarity=0.299 Sum_probs=120.0
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+..++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~~~~~~~~~~~~~l~~--i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~~~~ 68 (178)
T cd03247 3 INNVSFSYPEQEQQVLKN--LSLELKQGEKIALLGRSGSGKSTLLQLLTGD------------LKPQQGEITLDGVPVSD 68 (178)
T ss_pred EEEEEEEeCCCCccceEE--EEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCEEEECCEEHHH
Confidence 345555665432235655 9999999999999999999999999999999 99999999999974422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD 250 (441)
. .... +..+.+.++...+++ .|+.+|+ ...||+||+||+.+ +|+|| ++++|
T Consensus 69 ~-~~~~--~~~i~~~~q~~~~~~-~tv~~~i--------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD 130 (178)
T cd03247 69 L-EKAL--SSLISVLNQRPYLFD-TTLRNNL--------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130 (178)
T ss_pred H-HHHH--HhhEEEEccCCeeec-ccHHHhh--------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 1 1111 122333333334554 5787776 45688888877654 99999 99999
Q ss_pred chhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 251 GVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+..++.+.++++++... +||+++|+ +.... .++++.++ ++|.+++
T Consensus 131 ~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~-~~d~~~~l---~~g~i~~ 176 (178)
T cd03247 131 PITERQLLSLIFEVLKDKTLIWITHH-----LTGIE-HMDKILFL---ENGKIIM 176 (178)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEecC-----HHHHH-hCCEEEEE---ECCEEEe
Confidence 99999999999887543 89999999 55443 58998888 7777764
No 193
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.4e-23 Score=229.44 Aligned_cols=185 Identities=20% Similarity=0.276 Sum_probs=150.5
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++|++++|..+. ..++++ +||.+++|+.|+|+|||||||||++++|.++ .||.+|+|.++|.
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g--~sl~i~~G~~valVG~SGsGKST~i~LL~Rf------------ydP~~G~V~idG~ 415 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKG--VSLKIPSGQTVALVGPSGSGKSTLIQLLARF------------YDPTSGEVLIDGE 415 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCC--eEEEeCCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCceEEEcCc
Confidence 578999999998865 456765 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------HHHHHHHHH-------HHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------VKELAQMLE-------RQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------~~~l~~~~~-------~~ls~ 232 (441)
++.....+.++...+++.|.| .+...|++||+.++... +..+.+.+. ..|||
T Consensus 416 di~~~~~~~lr~~iglV~QeP---vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 416 DIRNLNLKWLRSQIGLVSQEP---VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred cchhcchHHHHhhcCeeeech---hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 776554445555667777776 44557999999887511 111222221 13999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||+||+++ |++|| |++||+.....+.++|+..... |.|+++|+ |... +.+|++.++ +.|
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHR-----LStI-rnaD~I~v~---~~G 563 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHR-----LSTI-RNADKIAVM---EEG 563 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeee-----hhhh-hccCEEEEE---ECC
Confidence 99999886 99999 9999999999999999998754 77888999 7766 458999999 999
Q ss_pred CeeeCChHH
Q 013511 301 GVVSRNSKV 309 (441)
Q Consensus 301 ~vv~~~~~~ 309 (441)
.+++.+...
T Consensus 564 ~IvE~G~h~ 572 (1228)
T KOG0055|consen 564 KIVEQGTHD 572 (1228)
T ss_pred EEEEecCHH
Confidence 999998744
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=8e-24 Score=203.90 Aligned_cols=189 Identities=12% Similarity=0.145 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~i 172 (441)
+++++.|+++.|++. .++++ ++|++.+|++++|+|+||||||||+|+|+|+ +.| .+|+|
T Consensus 6 ~~l~~~~l~~~~~~~--~il~~--isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl------------~~~~~~~~~~G~i 69 (259)
T PRK14260 6 PAIKVKDLSFYYNTS--KAIEG--ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI------------SELEGPVKVEGVV 69 (259)
T ss_pred ceEEEEEEEEEECCe--Eeecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------cCcccCCccceEE
Confidence 356778888888654 36665 9999999999999999999999999999999 774 48999
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~~ 227 (441)
.++|................+.+.++...+|+ .|+.+|+.+.... ..+.. +...
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (259)
T PRK14260 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSA 148 (259)
T ss_pred EECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 99997543210110111223444444445666 7999998764210 11111 1222
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+++ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +......||++.++.
T Consensus 149 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~-----~~~i~~~~d~i~~l~ 223 (259)
T PRK14260 149 LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN-----MQQATRVSDFTAFFS 223 (259)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCeEEEEe
Confidence 4589999988765 99999 9999999999999999988544 89999999 887778899998883
Q ss_pred ecC--CCCeeeCChH
Q 013511 296 LQK--SGGVVSRNSK 308 (441)
Q Consensus 296 l~~--~g~vv~~~~~ 308 (441)
..+ .|.++..++.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 211 4888877653
No 195
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=7.7e-24 Score=191.32 Aligned_cols=153 Identities=24% Similarity=0.349 Sum_probs=111.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+..++++ ++|++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~~~~l~~--i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~------------~~~~~G~i~~~g~~~~~ 68 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKD--VSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL------------YDPTSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEcCCCCcccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCCEEEECCEEhhh
Confidence 345555665432235655 9999999999999999999999999999999 99999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceee----------eEEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAA----------GMVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~----------~lIlDE-~~~lD 250 (441)
....... ..+.+.++...++. .|+.||+ ||+|++||+. ++|+|| ++++|
T Consensus 69 ~~~~~~~--~~i~~~~~~~~~~~-~t~~e~l-----------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD 128 (171)
T cd03228 69 LDLESLR--KNIAYVPQDPFLFS-GTIRENI-----------------LSGGQRQRIAIARALLRDPPILILDEATSALD 128 (171)
T ss_pred cCHHHHH--hhEEEEcCCchhcc-chHHHHh-----------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 1111111 22333333334444 4777665 6777766655 499999 99999
Q ss_pred chhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 251 GVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+..++.+.++++++... +|++++|+ +..... ||++.++
T Consensus 129 ~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~~-~d~~~~l 167 (171)
T cd03228 129 PETEALILEALRALAKGKTVIVIAHR-----LSTIRD-ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecC-----HHHHHh-CCEEEEE
Confidence 99999999999988643 88999999 666555 8998887
No 196
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.88 E-value=3.3e-23 Score=196.87 Aligned_cols=166 Identities=17% Similarity=0.212 Sum_probs=123.8
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|...... .......+.
T Consensus 35 ~il~~--vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~~~~~~---~~~~~~~i~ 97 (236)
T cd03267 35 EALKG--ISFTIEKGEIVGFIGPNGAGKTTTLKILSGL------------LQPTSGEVRVAGLVPWKR---RKKFLRRIG 97 (236)
T ss_pred eeeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEcccc---chhhcccEE
Confidence 36665 9999999999999999999999999999999 899999999999753211 111122333
Q ss_pred ccc-ceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccceeee----------EEE
Q 013511 195 LEM-PLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRAAG----------MVI 243 (441)
Q Consensus 195 ~~~-~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~~----------lIl 243 (441)
+.+ +...++...|+.+|+.+.... +..+ .+.....||+|++||+.+ +|+
T Consensus 98 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 177 (236)
T cd03267 98 VVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFL 177 (236)
T ss_pred EEcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 332 223566778999988654321 1111 122335699999988754 999
Q ss_pred eC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 244 NT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 244 DE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
|| +++||+..++.+.++|+++.. .+||+++|+ +......||++.++ .+|.++..
T Consensus 178 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l---~~G~i~~~ 235 (236)
T cd03267 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY-----MKDIEALARRVLVI---DKGRLLYD 235 (236)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC-----HHHHHHhCCEEEEE---eCCEEEec
Confidence 99 999999999999999998742 399999999 66666678999888 77877643
No 197
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.88 E-value=3.6e-23 Score=195.06 Aligned_cols=168 Identities=17% Similarity=0.216 Sum_probs=129.4
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+.+.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|...
T Consensus 23 l~~~~~~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~p~~G~i~~~g~~~ 86 (224)
T cd03220 23 LGILGRKGEVGEF--WALKD--VSFEVPRGERIGLIGRNGAGKSTLLRLLAGI------------YPPDSGTVTVRGRVS 86 (224)
T ss_pred hhhhhhhhhcCCe--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEEc
Confidence 6788999999886 46765 9999999999999999999999999999999 999999999999753
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceee
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAA 239 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~ 239 (441)
... ... ..+++..|+.+|+.+.... ..+ ..+.....||+|++||++
T Consensus 87 ~~~-------~~~-------~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 152 (224)
T cd03220 87 SLL-------GLG-------GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLA 152 (224)
T ss_pred hhh-------ccc-------ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 210 001 1234557888887654221 111 112334679999999876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.++++.++ ++|.++..
T Consensus 153 laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~~~ 223 (224)
T cd03220 153 FAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD-----PSSIKRLCDRALVL---EKGKIRFD 223 (224)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEec
Confidence 5 99999 999999999999999988743 389999999 66666778998888 77877643
No 198
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-23 Score=211.44 Aligned_cols=197 Identities=18% Similarity=0.218 Sum_probs=150.0
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+++.|+|+.|+.++ .++++ +||++.+|+.|+|+|+|||||||++|+|.++ .| .+|+|.++|+++
T Consensus 352 I~F~dV~f~y~~k~-~iL~g--vsf~I~kGekVaIvG~nGsGKSTilr~LlrF------------~d-~sG~I~IdG~di 415 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKR-KVLKG--VSFTIPKGEKVAIVGSNGSGKSTILRLLLRF------------FD-YSGSILIDGQDI 415 (591)
T ss_pred EEEEeeEEEeCCCC-ceecc--eeEEecCCCEEEEECCCCCCHHHHHHHHHHH------------hc-cCCcEEECCeeH
Confidence 77899999999876 46655 9999999999999999999999999999999 89 999999999987
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------HHHH-------HHHHHHHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------VKEL-------AQMLERQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------~~~l-------~~~~~~~ls~g~ 234 (441)
.....+.++. .+++.+|...+|. -|+..|+.++... +.++ .......|||||
T Consensus 416 k~~~~~SlR~--~Ig~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 416 KEVSLESLRQ--SIGVVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred hhhChHHhhh--heeEeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 6554444443 3455566656665 4888898775211 1112 122234599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHc-CCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTF-KANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~-~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +++|| |+.||......+.+.+... ...|+|++-|+ +.-. ..+|+|.++ ++|.+
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~-----l~ll-~~~DkI~~l---~nG~v 563 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHR-----LDLL-KDFDKIIVL---DNGTV 563 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEec-----chhH-hcCCEEEEE---ECCee
Confidence 999876 99999 9999998887787777774 44599999898 5433 568999999 99999
Q ss_pred eeCChHHHHHHHHHHHHHHhcC
Q 013511 303 VSRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~yf~g 324 (441)
++.+.......+...+.+|...
T Consensus 564 ~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 564 KEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred EEeccHHHHhhhhhHHHHHhcc
Confidence 9999754433366667776654
No 199
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=1.3e-23 Score=198.32 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=133.7
Q ss_pred hhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc---CCCCcccC
Q 013511 100 VSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD---IGQGAITI 174 (441)
Q Consensus 100 l~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld---p~~G~i~~ 174 (441)
+.+.|++++|.+.+ ..++++ ++|++.+|++++|+||||||||||+|+|+|+ +. |.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~--vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~------------~~~~~~~~G~i~~ 69 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILND--VSLHVESGQVMAILGSSGSGKTTLLDAISGR------------VEGGGTTSGQILF 69 (226)
T ss_pred ceeecceeeeecCccccccccC--ceEEEcCCeEEEEECCCCCCHHHHHHHHhCc------------cCCCCCCceEEEE
Confidence 45678888886542 356765 9999999999999999999999999999999 88 89999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHH-HH---------HHHHHHh
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKE-LA---------QMLERQF 230 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~-l~---------~~~~~~l 230 (441)
+|..... . .....+.+.++...+|..+|+.+|+.+.... ... +. +.....|
T Consensus 70 ~g~~~~~---~--~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 144 (226)
T cd03234 70 NGQPRKP---D--QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGI 144 (226)
T ss_pred CCEECCh---H--HhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCc
Confidence 9974421 1 1223444555555678888999999764221 001 11 1112358
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHH-HHHhcCCCCeEEEEe
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSML-RDVLKNRPNVDVVKL 296 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l-~~~~~~~~~v~vl~l 296 (441)
|+|++||+++ +|+|| ++++|+..+..+.++++++.. .++|+++|+ + ....+.+|++.++
T Consensus 145 S~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~-----~~~~~~~~~d~i~~l-- 217 (226)
T cd03234 145 SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ-----PRSDLFRLFDRILLL-- 217 (226)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC-----CCHHHHHhCCEEEEE--
Confidence 9999988765 99999 999999999999999988743 389999998 5 3556678999888
Q ss_pred cCCCCeeeC
Q 013511 297 QKSGGVVSR 305 (441)
Q Consensus 297 ~~~g~vv~~ 305 (441)
+.|.++..
T Consensus 218 -~~G~i~~~ 225 (226)
T cd03234 218 -SSGEIVYS 225 (226)
T ss_pred -eCCEEEec
Confidence 78877653
No 200
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2e-23 Score=205.74 Aligned_cols=205 Identities=15% Similarity=0.201 Sum_probs=144.9
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQ 169 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~ 169 (441)
...+|+.+.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ +. |.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~--~iL~~--is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl------------~~~~~~~p~~ 104 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDD--HALKG--VSMDIPEKSVTALIGPSGCGKSTFLRCLNRM------------NDRIKAARID 104 (305)
T ss_pred CCCceEEEEEEEEEeCCe--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------ccccCCCCCc
Confidence 345578999999999764 46765 9999999999999999999999999999998 75 689
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------------HHHHH--
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------------VKELA-- 223 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------------~~~l~-- 223 (441)
|+|.++|................+.+.++...+|+ .|+.+|+.+.... +..+.
T Consensus 105 G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 183 (305)
T PRK14264 105 GSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQ 183 (305)
T ss_pred eEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHH
Confidence 99999997542110000011123444444434565 4888888764210 11111
Q ss_pred -----------HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHH
Q 013511 224 -----------QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSM 280 (441)
Q Consensus 224 -----------~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~ 280 (441)
+.....||+|++||+++ +|+|| +++||+..++.+.++|+++... +||+++|+
T Consensus 184 ~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~----- 258 (305)
T PRK14264 184 AALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN----- 258 (305)
T ss_pred cCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcC-----
Confidence 11234589999988765 99999 9999999999999999988544 89999999
Q ss_pred HHHHhcCCCCe-EEEEecCCCCeeeCChHHH--HHHHHHHHHHHhcC
Q 013511 281 LRDVLKNRPNV-DVVKLQKSGGVVSRNSKVR--QKARSYRIREYFYG 324 (441)
Q Consensus 281 l~~~~~~~~~v-~vl~l~~~g~vv~~~~~~~--~~~r~~~~~~yf~g 324 (441)
+......|+++ .++ +.|.++..++... .......+++||.+
T Consensus 259 ~~~i~~~~d~i~~~l---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 302 (305)
T PRK14264 259 MQQAARISDQTAVFL---TGGELVEYDDTDKIFENPESQRVEDYITG 302 (305)
T ss_pred HHHHHHhcCEEEEEe---cCCEEEEeCCHHHHHhCcccHHHHHHhcc
Confidence 77766788986 456 7888887765332 12223456677755
No 201
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.7e-24 Score=207.66 Aligned_cols=186 Identities=19% Similarity=0.259 Sum_probs=134.4
Q ss_pred chhHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~ 71 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNN--TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL------------IISETGQTIVG 71 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEEC
Confidence 356677888886532 136665 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeecc-----CcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH----------HHHHHHH
Q 013511 176 GCIAATPIE-----LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL----------AQMLERQ 229 (441)
Q Consensus 176 G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l----------~~~~~~~ 229 (441)
|........ .......++.++.+...++. .|+.+|+.+.... +.++ .+.....
T Consensus 72 g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~ 150 (289)
T PRK13645 72 DYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFE 150 (289)
T ss_pred CEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhh
Confidence 975421100 01111223333333222343 5888988764321 1111 1222356
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
||+||+||+.+ +|+|| +++||+..++.+.++++++. ..+||+++|+ +....+.||++.++
T Consensus 151 LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~-----~~~~~~~~d~i~~l- 224 (289)
T PRK13645 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN-----MDQVLRIADEVIVM- 224 (289)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE-
Confidence 99999998775 99999 99999999999999998874 2389999999 77777789999998
Q ss_pred ecCCCCeeeCCh
Q 013511 296 LQKSGGVVSRNS 307 (441)
Q Consensus 296 l~~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 225 --~~G~i~~~g~ 234 (289)
T PRK13645 225 --HEGKVISIGS 234 (289)
T ss_pred --ECCEEEEeCC
Confidence 8888877655
No 202
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.87 E-value=7e-24 Score=204.16 Aligned_cols=186 Identities=18% Similarity=0.153 Sum_probs=136.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~~--~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~ 68 (258)
T PRK11701 5 PLLSVRGLTKLYGPR--KGCRD--VSFDLYPGEVLGIVGESGSGKTTLLNALSAR------------LAPDAGEVHYRMR 68 (258)
T ss_pred ceEEEeeeEEEcCCc--eeeee--eeEEEeCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCc
Confidence 478889999999764 46665 9999999999999999999999999999999 9999999999997
Q ss_pred e-----eeeeccCc----CCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHH----------HHHHH
Q 013511 178 I-----AATPIELP----IDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKE----------LAQML 226 (441)
Q Consensus 178 ~-----~~~~~~~~----~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~----------l~~~~ 226 (441)
. ........ .....++.++.+...++...++.+|+.+... .+.+ ..+..
T Consensus 69 ~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4 32111100 0112334444433345566677777643210 0111 11222
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
...||+||+||+++ +|+|| +++||+...+.+.++++++.. .+||+++|+ +......||++.
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~-----~~~~~~~~d~i~ 223 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD-----LAVARLLAHRLL 223 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC-----HHHHHHhcCEEE
Confidence 34589999988775 99999 999999999999999988643 389999999 777767789998
Q ss_pred EEEecCCCCeeeCCh
Q 013511 293 VVKLQKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l~~~g~vv~~~~ 307 (441)
++ ++|.+++.++
T Consensus 224 ~l---~~g~i~~~~~ 235 (258)
T PRK11701 224 VM---KQGRVVESGL 235 (258)
T ss_pred EE---ECCEEEEeCC
Confidence 88 8888887664
No 203
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-23 Score=201.58 Aligned_cols=188 Identities=16% Similarity=0.199 Sum_probs=141.2
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
..||+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ .+|.+|+|.++
T Consensus 7 ~~~~i~~~~~~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~------------~~~~~G~v~~~ 70 (257)
T PRK14246 7 AEDVFNISRLYLYINDK--AILKD--ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL------------IEIYDSKIKVD 70 (257)
T ss_pred hhhheeeeeEEEecCCc--eeEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCcCceeEc
Confidence 45788999999999875 46665 9999999999999999999999999999999 99999998888
Q ss_pred ceeeeeecc----CcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHH
Q 013511 176 GCIAATPIE----LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QML 226 (441)
Q Consensus 176 G~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~ 226 (441)
|.+...... ........+.+.++...+|+..|+.+|+.+.... +..+. +..
T Consensus 71 G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (257)
T PRK14246 71 GKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP 150 (257)
T ss_pred CEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCC
Confidence 865321110 0111123344555555677888999998765221 01111 122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
...||+|++||+++ +|+|| +++||...++.+.+++.+++. .+||+++|+ +....+.|+++.++
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~-----~~~~~~~~d~v~~l 225 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN-----PQQVARVADYVAFL 225 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECC-----HHHHHHhCCEEEEE
Confidence 24588899888765 99999 999999999999999998754 399999999 77666789999888
Q ss_pred EecCCCCeeeCCh
Q 013511 295 KLQKSGGVVSRNS 307 (441)
Q Consensus 295 ~l~~~g~vv~~~~ 307 (441)
+.|.++..+.
T Consensus 226 ---~~g~i~~~g~ 235 (257)
T PRK14246 226 ---YNGELVEWGS 235 (257)
T ss_pred ---ECCEEEEECC
Confidence 7888877665
No 204
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.87 E-value=6e-24 Score=205.75 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=137.0
Q ss_pred CchhHHHHHHHHhh-------hhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 98 PMVSYVNVNAVLEG-------RRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 98 ~ml~~~nl~~~~~~-------~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+|+++.|+++.|+. ....++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~sG 67 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNN--VSLSLKSGETVALLGRSGCGKSTLARLLVGL------------ESPSQG 67 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCc
Confidence 46778889888863 01246765 9999999999999999999999999999999 899999
Q ss_pred cccCCceeeeeeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHHH----------HHH
Q 013511 171 AITIPGCIAATPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKEL----------AQM 225 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l----------~~~ 225 (441)
+|.++|......... ......++.++.+...|++..++.+|+.+... .+.++ .+.
T Consensus 68 ~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 999999754321110 11122333334433346677888888754221 01111 122
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCe
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
....||+|++||+++ +|+|| +++||...++.+.++++++.. .+||+++|+ +....+.||++
T Consensus 148 ~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~-----~~~i~~~~d~i 222 (268)
T PRK10419 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHD-----LRLVERFCQRV 222 (268)
T ss_pred CCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECC-----HHHHHHhCCEE
Confidence 234589999988765 99999 999999999999999988742 489999999 77776789999
Q ss_pred EEEEecCCCCeeeCCh
Q 013511 292 DVVKLQKSGGVVSRNS 307 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~ 307 (441)
.++ ++|++++.++
T Consensus 223 ~~l---~~G~i~~~g~ 235 (268)
T PRK10419 223 MVM---DNGQIVETQP 235 (268)
T ss_pred EEE---ECCEEeeeCC
Confidence 888 7888877665
No 205
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.87 E-value=4.7e-24 Score=200.43 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=126.9
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++....++++ +||++.+|++++|+||||||||||+++|+|+ ..|.+|+|.++|....
T Consensus 4 ~~~~l~~~~~~~~~~~l~~--i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~ 69 (220)
T cd03245 4 EFRNVSFSYPNQEIPALDN--VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL------------YKPTSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEcCCCCcccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCeEEECCEEhH
Confidence 3456677775422246655 9999999999999999999999999999999 8999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----HHHH---------HHHHHHH-----------HHhccCcc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----VLVK---------ELAQMLE-----------RQFNGNAE 235 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----~~~~---------~l~~~~~-----------~~ls~g~~ 235 (441)
....... ...+.+.++...+++ .|+.+|+.++. ..+. .+.+... ..||+||+
T Consensus 70 ~~~~~~~--~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 70 QLDPADL--RRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred HCCHHHH--HhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHH
Confidence 1111111 122333333334554 58888875431 0111 1122211 37999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+.+ +|+|| +++||+..++.+.++++++..+ +||+++|+ +... +.||++.++ ++|.++
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~-----~~~~-~~~d~v~~l---~~g~i~ 217 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR-----PSLL-DLVDRIIVM---DSGRIV 217 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHH-HhCCEEEEE---eCCeEe
Confidence 98765 99999 9999999999999999998654 89999999 5543 578999888 778775
Q ss_pred e
Q 013511 304 S 304 (441)
Q Consensus 304 ~ 304 (441)
.
T Consensus 218 ~ 218 (220)
T cd03245 218 A 218 (220)
T ss_pred e
Confidence 4
No 206
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.87 E-value=6.1e-24 Score=204.58 Aligned_cols=183 Identities=19% Similarity=0.183 Sum_probs=134.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~--~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~p~~G~i~~~g~~ 65 (258)
T PRK13548 2 MLEARNLSVRLGGR--TLLDD--VSLTLRPGEVVAILGPNGAGKSTLLRALSGE------------LSPDSGEVRLNGRP 65 (258)
T ss_pred eEEEEeEEEEeCCe--eeeee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEE
Confidence 45667788888654 46665 9999999999999999999999999999999 89999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHHH---------HHHHHHHhccCcccee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKEL---------AQMLERQFNGNAESRA 238 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~l---------~~~~~~~ls~g~~~r~ 238 (441)
......... ...+.+.++...++...|+.+|+.+... .+..+ .+.....||+|++||+
T Consensus 66 ~~~~~~~~~--~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv 143 (258)
T PRK13548 66 LADWSPAEL--ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRV 143 (258)
T ss_pred cccCCHHHh--hhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 422111111 1233344444455567799998876421 11111 1222345899988653
Q ss_pred ----------------eeEEEeC-CCCCCchhHHHHHHHHHHcC-C--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 239 ----------------AGMVINT-MGWIEGVGYELLLHAIDTFK-A--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 239 ----------------~~lIlDE-~~~lD~~~~~~l~~li~~~~-~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
.++|+|| +++||+..++.+.++++++. . .+||+++|+ +....+.||++.++ +
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~ 215 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHD-----LNLAARYADRIVLL---H 215 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHhcCEEEEE---E
Confidence 4689999 99999999999999998875 2 389999999 77776789999988 7
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
.|.++..++
T Consensus 216 ~G~i~~~~~ 224 (258)
T PRK13548 216 QGRLVADGT 224 (258)
T ss_pred CCEEEeeCC
Confidence 888876654
No 207
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.87 E-value=1e-23 Score=221.67 Aligned_cols=185 Identities=15% Similarity=0.223 Sum_probs=141.2
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 3 ~~i~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~------------~~p~~G~i~~~g~ 66 (501)
T PRK10762 3 ALLQLKGIDKAFPGV--KALSG--AALNVYPGRVMALVGENGAGKSTMMKVLTGI------------YTRDAGSILYLGK 66 (501)
T ss_pred ceEEEeeeEEEeCCe--EEeee--eeEEEcCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCE
Confidence 578889999999764 46765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHH---------HHHHHHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKEL---------AQMLERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l---------~~~~~~~ls~g 233 (441)
.......... ....+.+.++...+++.+|+.+|+.++.. .+.++ .+.....||+|
T Consensus 67 ~~~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG 145 (501)
T PRK10762 67 EVTFNGPKSS-QEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIG 145 (501)
T ss_pred ECCCCCHHHH-HhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHH
Confidence 5421110000 11234444444467888999999876311 01111 12344679999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
|+||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ ++.....||++.++ ++|
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd-----~~~~~~~~d~i~~l---~~G 217 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHR-----LKEIFEICDDVTVF---RDG 217 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---eCC
Confidence 9998876 99999 999999999999999988743 389999999 77777789999998 788
Q ss_pred CeeeCCh
Q 013511 301 GVVSRNS 307 (441)
Q Consensus 301 ~vv~~~~ 307 (441)
.++..+.
T Consensus 218 ~i~~~~~ 224 (501)
T PRK10762 218 QFIAERE 224 (501)
T ss_pred EEEEecC
Confidence 8876544
No 208
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.87 E-value=3.1e-23 Score=208.29 Aligned_cols=178 Identities=17% Similarity=0.214 Sum_probs=134.8
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeec
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPI 183 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~ 183 (441)
|+++.|++.. + + +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.......
T Consensus 4 ~l~~~~~~~~---~-~--isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~~~g~~i~~~~ 65 (354)
T TIGR02142 4 RFSKRLGDFS---L-D--ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL------------TRPDEGEIVLNGRTLFDSR 65 (354)
T ss_pred EEEEEECCEE---E-E--EEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEECccCc
Confidence 4555665431 2 3 8999999999999999999999999999999 9999999999997653211
Q ss_pred c--CcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------HHH---------HHHHHHHHhccCccceeee---
Q 013511 184 E--LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------VKE---------LAQMLERQFNGNAESRAAG--- 240 (441)
Q Consensus 184 ~--~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~~~---------l~~~~~~~ls~g~~~r~~~--- 240 (441)
. .....+..+.+.++...+|+++|+.+|+.+.... +.+ +.++....||+||+||+++
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAra 145 (354)
T TIGR02142 66 KGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRA 145 (354)
T ss_pred cccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 1 0011123344555555788899999999875321 111 1233445699999999875
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.++++++.. .+||+++|+ +......+|++.++ ++|.++..++
T Consensus 146 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~-----~~~~~~~~d~i~~l---~~G~i~~~g~ 215 (354)
T TIGR02142 146 LLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHS-----LQEVLRLADRVVVL---EDGRVAAAGP 215 (354)
T ss_pred HHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---eCCEEEEECC
Confidence 99999 999999999999999988743 389999999 77777789999999 8898887765
No 209
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.9e-23 Score=199.25 Aligned_cols=190 Identities=13% Similarity=0.124 Sum_probs=137.7
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQG 170 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G 170 (441)
..+.+.++++++.|++. .++++ ++|++.+|++++|+|+||||||||+++|+|+ ++| .+|
T Consensus 5 ~~~~~~~~~~~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~~~~~~G 68 (261)
T PRK14263 5 APIVMDCKLDKIFYGNF--MAVRD--SHVPIRKNEITGFIGPSGCGKSTVLRSLNRM------------NDLVKGFRFEG 68 (261)
T ss_pred CCceEEEEeEEEEeCCE--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHcc------------cccccCCCCce
Confidence 34456667777778654 46665 9999999999999999999999999999999 775 799
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHHHHH-------------HHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKELAQ-------------MLE 227 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~l~~-------------~~~ 227 (441)
+|.++|................+.+.++...+| ..|+.+|+.+... .+.++.+ ...
T Consensus 69 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 147 (261)
T PRK14263 69 HVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSG 147 (261)
T ss_pred EEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 999999754321101111123344444444555 5899999976421 1111111 112
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..||+|++||+++ +|+|| +++||+..++.+.+++++++.. +||+++|+ +....+.||++.++.
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~-----~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN-----MQQAIRVADTTAFFS 222 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHHhCCEEEEEe
Confidence 3589999988765 99999 9999999999999999998543 88999999 777777899999884
Q ss_pred ec-----CCCCeeeCCh
Q 013511 296 LQ-----KSGGVVSRNS 307 (441)
Q Consensus 296 l~-----~~g~vv~~~~ 307 (441)
+. ..|++++.+.
T Consensus 223 ~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 223 VDISQGTRTGYLVEMGP 239 (261)
T ss_pred cccccccCCceEEEeCC
Confidence 22 2688888765
No 210
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.87 E-value=1.1e-23 Score=202.64 Aligned_cols=182 Identities=20% Similarity=0.169 Sum_probs=134.8
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|....
T Consensus 3 ~~~~l~~~~~~~--~il~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 3 RLSRVSWSAGGR--LIVDG--VDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA------------LRPDAGTVDLAGVDLH 66 (256)
T ss_pred eEEeEEEEECCE--EEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCCEEEECCEEcc
Confidence 345677777654 46665 9999999999999999999999999999999 9999999999997543
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHH---------HHHHHHHhccCccc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKEL---------AQMLERQFNGNAES 236 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l---------~~~~~~~ls~g~~~ 236 (441)
........ ..+.+.++...++...|+.+|+.++.. .+.++ .+.....||+|++|
T Consensus 67 ~~~~~~~~--~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q 144 (256)
T TIGR03873 67 GLSRRARA--RRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQ 144 (256)
T ss_pred cCCHHHHh--hheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHH
Confidence 21111111 123344443345667899999866310 01111 11223458999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
|+.+ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++ ++|.++
T Consensus 145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~ 216 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHD-----LNLAASYCDHVVVL---DGGRVV 216 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---eCCCEE
Confidence 8765 99999 999999999999999998853 389999999 77777789999999 889988
Q ss_pred eCChH
Q 013511 304 SRNSK 308 (441)
Q Consensus 304 ~~~~~ 308 (441)
..+..
T Consensus 217 ~~g~~ 221 (256)
T TIGR03873 217 AAGPP 221 (256)
T ss_pred EecCH
Confidence 77653
No 211
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.4e-24 Score=205.67 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=136.2
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
|+++.|+++.|++.+ ..++++ ++|++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~--v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~ 69 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNG--VSFSITKGEWVSIIGQNGSGKSTTARLIDGL------------FEEFEGKVKIDGE 69 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCCEEEECCE
Confidence 677888888886422 236765 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r 237 (441)
..............++.++.+. .++...|+.+|+.+.... +.. +.+.....||+|++||
T Consensus 70 ~i~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr 148 (277)
T PRK13642 70 LLTAENVWNLRRKIGMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQR 148 (277)
T ss_pred ECCcCCHHHHhcceEEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 5432111112222334344331 245567999999764221 111 1122234699999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +.... .||++.++ +.|+++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~-----~~~~~-~~d~i~~l---~~G~i~ 219 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD-----LDEAA-SSDRILVM---KAGEII 219 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHH-hCCEEEEE---ECCEEE
Confidence 765 99999 999999999999999988743 389999999 66664 58999999 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 220 ~~g~ 223 (277)
T PRK13642 220 KEAA 223 (277)
T ss_pred EeCC
Confidence 7665
No 212
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=1.1e-23 Score=204.01 Aligned_cols=197 Identities=17% Similarity=0.209 Sum_probs=138.0
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
+++|+++.|.+....++++ +||++.+|++++|+|+||||||||+++|+|+ ++ .+|+|.++|..+.
T Consensus 4 ~~~nls~~~~~~~~~~l~~--isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl------------~~-~~G~I~i~g~~i~ 68 (275)
T cd03289 4 TVKDLTAKYTEGGNAVLEN--ISFSISPGQRVGLLGRTGSGKSTLLSAFLRL------------LN-TEGDIQIDGVSWN 68 (275)
T ss_pred EEEEEEEEeCCCCCcceec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhhh------------cC-CCcEEEECCEEhh
Confidence 3456666774322246765 9999999999999999999999999999999 76 7899999997653
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----HHHH---------HHHHHHHHH-----------hccCccc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----VLVK---------ELAQMLERQ-----------FNGNAES 236 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----~~~~---------~l~~~~~~~-----------ls~g~~~ 236 (441)
......++ ..+.+.++...+|. .|+.+|+..+. ..+. ...+..... ||+|++|
T Consensus 69 ~~~~~~lr--~~i~~v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 69 SVPLQKWR--KAFGVIPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred hCCHHHHh--hhEEEECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 22111122 23444444445665 48999986432 1111 112222223 9999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|+++ +|+|| ++++|+...+.+.++|++.... +||+++|+ +.... .||++.++ ++|.+++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~-----~~~i~-~~dri~vl---~~G~i~~ 216 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHR-----IEAML-ECQRFLVI---EENKVRQ 216 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECC-----HHHHH-hCCEEEEe---cCCeEee
Confidence 8765 99999 9999999999999999986544 99999999 65544 58999999 8999999
Q ss_pred CChHHHHHHHHHHHHHHhcC
Q 013511 305 RNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 305 ~~~~~~~~~r~~~~~~yf~g 324 (441)
.+.......+...+++++..
T Consensus 217 ~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 217 YDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred cCCHHHHhhCcHHHHHHHhh
Confidence 88754432233444555443
No 213
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.87 E-value=3.2e-24 Score=225.74 Aligned_cols=186 Identities=15% Similarity=0.186 Sum_probs=143.0
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~g 72 (510)
T PRK15439 9 PPLLCARSISKQYSGV--EVLKG--IDFTLHAGEVHALLGGNGAGKSTLMKIIAGI------------VPPDSGTLEIGG 72 (510)
T ss_pred CceEEEEeEEEEeCCc--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECC
Confidence 3578899999999764 46765 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-------HHHHH---------HHHHHHHhccCccceeee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------LVKEL---------AQMLERQFNGNAESRAAG 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------~~~~l---------~~~~~~~ls~g~~~r~~~ 240 (441)
........... ....+.+.++...++..+|+.+|+.+... .+.++ .+.....||+||+||+.+
T Consensus 73 ~~~~~~~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 151 (510)
T PRK15439 73 NPCARLTPAKA-HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEI 151 (510)
T ss_pred EECCCCCHHHH-HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHH
Confidence 75421110000 11234444444567888999999876421 11111 233456799999999876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.++|+++.. .+||+++|+ +......||++.++ ++|.++..+.
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd-----~~~~~~~~d~i~~l---~~G~i~~~g~ 223 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHK-----LPEIRQLADRISVM---RDGTIALSGK 223 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEecC
Confidence 99999 999999999999999988743 389999999 77777789999998 7888877654
No 214
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.4e-23 Score=221.08 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=141.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl------------~~p~~G~i~~~g~ 67 (510)
T PRK09700 4 PYISMAGIGKSFGPV--HALKS--VNLTVYPGEIHALLGENGAGKSTLMKVLSGI------------HEPTKGTITINNI 67 (510)
T ss_pred ceEEEeeeEEEcCCe--EEeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------cCCCccEEEECCE
Confidence 578899999999764 36665 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------------HHHHH---------HHHHHHHh
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------------LVKEL---------AQMLERQF 230 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------------~~~~l---------~~~~~~~l 230 (441)
......... ..+..+.+.++...+++.+|+.+|+.+... .+.++ .++....|
T Consensus 68 ~i~~~~~~~-~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 146 (510)
T PRK09700 68 NYNKLDHKL-AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANL 146 (510)
T ss_pred ECCCCCHHH-HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhC
Confidence 542211000 011234444444467788899888865210 01111 13345679
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEec
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQ 297 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~ 297 (441)
|+||+||+.+ +|+|| +++||+..+..+.++|++++. .+||+++|+ +......||++.++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd-----~~~~~~~~d~v~~l--- 218 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-----LAEIRRICDRYTVM--- 218 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---
Confidence 9999999876 99999 999999999999999998753 389999999 77777789999999
Q ss_pred CCCCeeeCCh
Q 013511 298 KSGGVVSRNS 307 (441)
Q Consensus 298 ~~g~vv~~~~ 307 (441)
++|.++..+.
T Consensus 219 ~~G~i~~~g~ 228 (510)
T PRK09700 219 KDGSSVCSGM 228 (510)
T ss_pred ECCEEeeecc
Confidence 7888876654
No 215
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=2.7e-23 Score=196.92 Aligned_cols=178 Identities=18% Similarity=0.231 Sum_probs=134.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|++++|+++ .++++ +++++.+|++++|+|+||||||||+++|+|. ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~il~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~------------~~~~~G~i~~~g~~~~~ 66 (232)
T cd03300 3 LENVSKFYGGF--VALDG--VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF------------ETPTSGEILLDGKDITN 66 (232)
T ss_pred EEeEEEEeCCe--eeecc--ceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEcCc
Confidence 45666677654 35655 9999999999999999999999999999999 99999999999974422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HHHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LVKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
.. .. ...+.+.++...+|..+|+.+|+.+... .+.. +.+.....||+|++||+.+
T Consensus 67 ~~--~~--~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 67 LP--PH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred CC--hh--hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 11 11 2234444555567778899999875421 1111 1223335689999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +......||++.++ ++|.++..++
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~-----~~~~~~~~d~i~~l---~~G~~~~~~~ 214 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHD-----QEEALTMSDRIAVM---NKGKIQQIGT 214 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhcCEEEEE---ECCEEEecCC
Confidence 99999 999999999999999988753 499999999 76666778999888 8888887765
No 216
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.87 E-value=1.9e-23 Score=198.69 Aligned_cols=178 Identities=19% Similarity=0.270 Sum_probs=135.2
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +|+++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 i~~l~~~~~~~--~il~~--is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 3 IANISKRFGSF--QALDD--VNLEVPTGSLVALLGPSGSGKSTLLRIIAGL------------EQPDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEECCe--eeeee--EEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCceEEEECCEEcCc
Confidence 45666666653 36655 9999999999999999999999999999999 99999999999975421
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~~- 240 (441)
. . .....+.+.++...+|+..|+.+|+.+.... +.++ .+.....||+|++||+.+
T Consensus 67 ~---~-~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (237)
T TIGR00968 67 V---H-ARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALA 142 (237)
T ss_pred C---C-hhhcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHH
Confidence 1 1 1123455555555678888999998764321 1111 122234689999988754
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|..+++.+.++++++.. .+||+++|+ +....+.||++.++ ++|++++.++
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~-----~~~~~~~~d~i~~l---~~g~i~~~~~ 214 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHD-----QEEAMEVADRIVVM---SNGKIEQIGS 214 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHhhcCEEEEE---ECCEEEEecC
Confidence 99999 999999999999999998743 489999999 77667789999888 8888887665
No 217
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.3e-23 Score=225.94 Aligned_cols=189 Identities=18% Similarity=0.171 Sum_probs=144.4
Q ss_pred CCchhHHHHHHHHhhh---------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 97 TPMVSYVNVNAVLEGR---------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~---------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
.+|+++.|+++.|+.. ...++++ +||++.+|++++|+|+||||||||+|+|+|+ +.|
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~--vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl------------~~p 376 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEK--VSFDLWPGETLSLVGESGSGKSTTGRALLRL------------VES 376 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEee--eEeEEcCCCEEEEECCCCCCHHHHHHHHHcC------------CCC
Confidence 4689999999999621 1246765 9999999999999999999999999999999 999
Q ss_pred CCCcccCCceeeeeeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH----------H
Q 013511 168 GQGAITIPGCIAATPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE----------L 222 (441)
Q Consensus 168 ~~G~i~~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~----------l 222 (441)
.+|+|.++|......... ......++.+|.+...+++.+|+.+|+.+.... +.+ .
T Consensus 377 ~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~ 456 (623)
T PRK10261 377 QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456 (623)
T ss_pred CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHH
Confidence 999999999754321111 112223444454433578888999998653210 111 1
Q ss_pred HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCC
Q 013511 223 AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNR 288 (441)
Q Consensus 223 ~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~ 288 (441)
.+.....||+||+||+.+ +|+|| +++||+..+..+.++|++++. .+||++||+ +..+...|
T Consensus 457 ~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHd-----l~~v~~~~ 531 (623)
T PRK10261 457 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHD-----MAVVERIS 531 (623)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhC
Confidence 233445799999999876 99999 999999999999999988743 389999999 88887889
Q ss_pred CCeEEEEecCCCCeeeCCh
Q 013511 289 PNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 289 ~~v~vl~l~~~g~vv~~~~ 307 (441)
|++.++ +.|.+++.++
T Consensus 532 dri~vl---~~G~iv~~g~ 547 (623)
T PRK10261 532 HRVAVM---YLGQIVEIGP 547 (623)
T ss_pred CEEEEE---ECCEEEEecC
Confidence 999999 8899988765
No 218
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-23 Score=200.56 Aligned_cols=201 Identities=14% Similarity=0.230 Sum_probs=139.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCccc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~i~ 173 (441)
+++++|+++.|+++ .++++ ++|++.+|++++|+||||||||||+++|+|+ ++ |++|+|.
T Consensus 3 ~l~~~~v~~~~~~~--~~l~~--~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~~G~v~ 66 (250)
T PRK14266 3 RIEVENLNTYFDDA--HILKN--VNLDIPKNSVTALIGPSGCGKSTFIRTLNRM------------NDLIPGFRHEGHIY 66 (250)
T ss_pred EEEEEeEEEEeCCe--EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------hccCCCCCCccEEE
Confidence 45567777777653 36665 9999999999999999999999999999998 64 3889999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------HH----HHH-------------HHHHHH
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------LV----KEL-------------AQMLER 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------~~----~~l-------------~~~~~~ 228 (441)
++|................+.+.++...+|. .|+.+|+.+... .. ..+ .+....
T Consensus 67 ~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14266 67 LDGVDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSAL 145 (250)
T ss_pred ECCEEcccccccHHHHhhheEEEecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcc
Confidence 9997542210000111223444444445565 488998875321 01 111 111234
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||+|++||+++ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +......++++.++
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~-----~~~~~~~~~~i~~l-- 218 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN-----MQQATRVSKYTSFF-- 218 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECC-----HHHHHhhcCEEEEE--
Confidence 589999988765 99999 9999999999999999987544 89999999 77777778998888
Q ss_pred cCCCCeeeCChHHHH--HHHHHHHHHHhcC
Q 013511 297 QKSGGVVSRNSKVRQ--KARSYRIREYFYG 324 (441)
Q Consensus 297 ~~~g~vv~~~~~~~~--~~r~~~~~~yf~g 324 (441)
.+|.++..+..... .......++|+.+
T Consensus 219 -~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (250)
T PRK14266 219 -LNGEIIESGLTDQIFINPKDKRTEDYITG 247 (250)
T ss_pred -ECCeEEEeCCHHHHHhCCCChHHHHHhcc
Confidence 78888877653321 1122344556544
No 219
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.87 E-value=2.4e-23 Score=197.89 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=130.1
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|+.....++++ ++|++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~~~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~~~~ 68 (237)
T cd03252 3 FEHVRFRYKPDGPVILDN--ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF------------YVPENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEecCCCCccceec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCeehHh
Confidence 456666775322246655 9999999999999999999999999999999 89999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----HHHH---------HHH-----------HHHHHHhccCccc
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----VLVK---------ELA-----------QMLERQFNGNAES 236 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----~~~~---------~l~-----------~~~~~~ls~g~~~ 236 (441)
...... ...+.+.++...++. .|+.+|+.+.. ..+. ++. +.....||+||+|
T Consensus 69 ~~~~~~--~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q 145 (237)
T cd03252 69 ADPAWL--RRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ 145 (237)
T ss_pred cCHHHH--hhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence 111111 122344444444554 68888886531 1111 111 1123569999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|+.+ +|+|| +++||+..++.+.++++++... +||+++|+ +.... .|+++.++ ++|.++.
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~-----~~~~~-~~d~v~~l---~~G~i~~ 216 (237)
T cd03252 146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHR-----LSTVK-NADRIIVM---EKGRIVE 216 (237)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHH-hCCEEEEE---ECCEEEE
Confidence 8775 99999 9999999999999999988643 89999999 66553 58999888 8888887
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.++
T Consensus 217 ~~~ 219 (237)
T cd03252 217 QGS 219 (237)
T ss_pred EcC
Confidence 665
No 220
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=1.4e-23 Score=195.00 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=118.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|..
T Consensus 1 ~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~p~~G~v~~~g~~ 64 (204)
T PRK13538 1 MLEARNLACERDER--ILFSG--LSFTLNAGELVQIEGPNGAGKTSLLRILAGL------------ARPDAGEVLWQGEP 64 (204)
T ss_pred CeEEEEEEEEECCE--EEEec--ceEEECCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEE
Confidence 35566777777654 36655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------HH---------HHHHHHHHHhccCccceeee-
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------VK---------ELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------~~---------~l~~~~~~~ls~g~~~r~~~- 240 (441)
.... .. .....+.+..+...+++..|+.+|+.++... +. ...+.....||+|++||+++
T Consensus 65 ~~~~-~~--~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 65 IRRQ-RD--EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred cccc-hH--HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHH
Confidence 4221 11 1112334444444677888999998765421 11 11233445799999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCc
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~ 275 (441)
+|+|| ++++|+..++.+.+++++++ ..+||+++|+
T Consensus 142 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 188 (204)
T PRK13538 142 RLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQ 188 (204)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 99999 99999999999999999874 2489999999
No 221
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.87 E-value=7.3e-23 Score=193.75 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=122.8
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
++||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|...... ....++.++ ..
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~-----~~~~~~v~q--~~ 63 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGL------------AQPTSGGVILEGKQITEP-----GPDRMVVFQ--NY 63 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCCC-----ChhheEEec--Cc
Confidence 48999999999999999999999999999999 999999999999754211 111233333 34
Q ss_pred EEecccCccCCHHHHHH---------H----HHHH---------HHHHHHHhccCccceeee----------EEEeC-CC
Q 013511 201 YFFGHATPSNNVELYKV---------L----VKEL---------AQMLERQFNGNAESRAAG----------MVINT-MG 247 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~~---------~----~~~l---------~~~~~~~ls~g~~~r~~~----------lIlDE-~~ 247 (441)
.+++.+|+.+|+.++.. . +.++ .+.....||+|++||+.+ +|+|| ++
T Consensus 64 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 143 (230)
T TIGR01184 64 SLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143 (230)
T ss_pred ccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 57788899999876421 0 1111 123345699999998775 99999 99
Q ss_pred CCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 248 WIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 248 ~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+||+..++.+.++++++.. .+||+++|+ +....+.||++.++ ++|.++..+
T Consensus 144 gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~-----~~~~~~~~d~v~~l---~~G~i~~~~ 197 (230)
T TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHD-----VDEALLLSDRVVML---TNGPAANIG 197 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEEEE---eCCcEeccc
Confidence 9999999999999988742 389999999 77777789999988 788877554
No 222
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=1.1e-23 Score=196.02 Aligned_cols=182 Identities=17% Similarity=0.186 Sum_probs=130.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++.|+++.|+.....++++ ++|++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~--isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~g~~ 71 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKN--VSFKVKAGEKIGIVGRTGAGKSTLILALFRF------------LEAEEGKIEIDGID 71 (207)
T ss_pred eEEEEEEEEEeCCCCcccccC--ceEEECCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCeEEECCEE
Confidence 355566777775422246655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHHHH--HHHHHHhccCccceeee----------EE
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKELA--QMLERQFNGNAESRAAG----------MV 242 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~l~--~~~~~~ls~g~~~r~~~----------lI 242 (441)
......... ...+.+.++...+++ .|+.+|+.++.. .+.... +.....||+|++||+++ +|
T Consensus 72 ~~~~~~~~~--~~~i~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~lll 148 (207)
T cd03369 72 ISTIPLEDL--RSSLTIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLV 148 (207)
T ss_pred hHHCCHHHH--HhhEEEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 422111111 223444444445665 489888865321 111111 12234689999988765 99
Q ss_pred EeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 243 INT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 243 lDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+|| ++++|+..++.+.++++++... ++|+++|+ +..... +|++.++ ++|.++..+
T Consensus 149 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~-----~~~~~~-~d~v~~l---~~g~i~~~g 205 (207)
T cd03369 149 LDEATASIDYATDALIQKTIREEFTNSTILTIAHR-----LRTIID-YDKILVM---DAGEVKEYD 205 (207)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHhh-CCEEEEE---ECCEEEecC
Confidence 999 9999999999999999987543 88999999 665544 8999888 778776543
No 223
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.87 E-value=1.8e-23 Score=227.73 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=140.8
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|++++|++....++++ +||++++|++++|+|+||||||||+|+|+|+ .+|.+|+|.++|.+.
T Consensus 452 I~~~nvsf~Y~~~~~~vL~~--isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~i 517 (686)
T TIGR03797 452 IEVDRVTFRYRPDGPLILDD--VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF------------ETPESGSVFYDGQDL 517 (686)
T ss_pred EEEEEEEEEcCCCCccceee--eEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCEEc
Confidence 66788888886433457766 9999999999999999999999999999999 999999999999876
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHH---------HHHHHH-----------HHHhccCcc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVK---------ELAQML-----------ERQFNGNAE 235 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~---------~l~~~~-----------~~~ls~g~~ 235 (441)
.......++. .+.+.+|..++|. -|++||+.++.. .+. +..+.. ...||+||+
T Consensus 518 ~~~~~~~lr~--~i~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 518 AGLDVQAVRR--QLGVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred CcCCHHHHHh--ccEEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 4433333333 3445555556665 599999987521 111 111111 124899999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
||+++ +|+|| |+++|+...+.+.+.+++.+ .++|+++|+ +... +.+|++.++ ++|++++
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~-~T~IiItHr-----~~~i-~~~D~Iivl---~~G~iv~ 664 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK-VTRIVIAHR-----LSTI-RNADRIYVL---DAGRVVQ 664 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhC-CeEEEEecC-----hHHH-HcCCEEEEE---ECCEEEE
Confidence 99875 99999 99999999999999999884 588999999 5444 568999999 8999999
Q ss_pred CChHHH
Q 013511 305 RNSKVR 310 (441)
Q Consensus 305 ~~~~~~ 310 (441)
.++...
T Consensus 665 ~G~~~~ 670 (686)
T TIGR03797 665 QGTYDE 670 (686)
T ss_pred ECCHHH
Confidence 887443
No 224
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.87 E-value=1.4e-23 Score=195.09 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=122.6
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
+|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|......
T Consensus 2 ~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~~ 65 (206)
T TIGR03608 2 KNISKKFGDK--IILDD--LNLTIEKGKMYAIIGESGSGKSTLLNIIGLL------------EKFDSGQVYLNGKETPPL 65 (206)
T ss_pred cceEEEECCE--EEEec--eEEEEeCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEECCEEcccc
Confidence 4666677653 36655 9999999999999999999999999999999 999999999999753211
Q ss_pred ccCc--CCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee
Q 013511 183 IELP--IDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 183 ~~~~--~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~ 240 (441)
.... ......+.+.++...+|.+.|+.+|+.+.... +.+ ..+.....||+|++||+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~l 145 (206)
T TIGR03608 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVAL 145 (206)
T ss_pred chhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHH
Confidence 1100 01122344445555678888999998764211 111 1123345699999988765
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
+|+|| ++++|+..++.+.++++++.. .+||+++|+ +... ..|+++.+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~-----~~~~-~~~d~i~~ 205 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD-----PEVA-KQADRVIE 205 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHH-hhcCEEEe
Confidence 99999 999999999999999998753 388999999 4432 35777654
No 225
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=3.1e-23 Score=196.95 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=133.7
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. ++++ ++|++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~---~l~~--is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~------------~~p~~G~v~i~g~~~~~ 65 (235)
T cd03299 3 VENLSKDWKEF---KLKN--VSLEVERGDYFVILGPTGSGKSVLLETIAGF------------IKPDSGKILLNGKDITN 65 (235)
T ss_pred eEeEEEEeCCc---eeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEcCc
Confidence 34555566542 4655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee-
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~- 240 (441)
.. . ....+.+.++...+|+..|+.+|+.+.... +.+ +.++....||+|++||+++
T Consensus 66 ~~--~--~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 141 (235)
T cd03299 66 LP--P--EKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIA 141 (235)
T ss_pred CC--h--hHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHH
Confidence 11 1 123344555555678888999998764211 111 1223334689999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+++|| ++++|..+++.+.++++++.. .+||+++|+ +....+.||++.++ +.|+++..++
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 213 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-----FEEAWALADKVAIM---LNGKLIQVGK 213 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEEEEecC
Confidence 99999 999999999999999988743 499999999 77766778999888 7888887765
No 226
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.87 E-value=1.4e-23 Score=201.47 Aligned_cols=186 Identities=18% Similarity=0.158 Sum_probs=132.6
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~ 65 (253)
T TIGR02323 2 PLLQVSGLSKSYGGG--KGCRD--VSFDLYPGEVLGIVGESGSGKSTLLGCLAGR------------LAPDHGTATYIMR 65 (253)
T ss_pred ceEEEeeeEEEeCCc--eEeec--ceEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEEecc
Confidence 467788898888754 35655 9999999999999999999999999999999 9999999999985
Q ss_pred e-----eeeeccCc----CCCCCCCCcccceEEEecccCccCCHHHHH------------HHHHH----------HHHHH
Q 013511 178 I-----AATPIELP----IDPVEGIPLEMPLVYFFGHATPSNNVELYK------------VLVKE----------LAQML 226 (441)
Q Consensus 178 ~-----~~~~~~~~----~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------------~~~~~----------l~~~~ 226 (441)
. ........ .....++.++.+...++...++.+|+.... ..+.+ ..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 66 SGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3 21110000 011123333433223444556666653211 01111 12233
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
...||+||+||+++ +|+|| +++||+..++.+.++++++. ..+||+++|+ +......++++.
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~-----~~~~~~~~d~~~ 220 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD-----LGVARLLAQRLL 220 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcCEEE
Confidence 45699999998776 99999 99999999999999998863 2489999999 776666789988
Q ss_pred EEEecCCCCeeeCCh
Q 013511 293 VVKLQKSGGVVSRNS 307 (441)
Q Consensus 293 vl~l~~~g~vv~~~~ 307 (441)
++ +.|+++..++
T Consensus 221 ~l---~~G~i~~~~~ 232 (253)
T TIGR02323 221 VM---QQGRVVESGL 232 (253)
T ss_pred EE---ECCEEEEECC
Confidence 88 7888887664
No 227
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.87 E-value=2.3e-23 Score=223.00 Aligned_cols=185 Identities=22% Similarity=0.348 Sum_probs=139.9
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|++++|++....++++ +++++++|+.++|+|+||||||||+++|+|+ ++|.+|+|.++|...
T Consensus 342 i~~~~vsf~y~~~~~~il~~--i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl------------~~p~~G~I~i~g~~i 407 (582)
T PRK11176 342 IEFRNVTFTYPGKEVPALRN--INFKIPAGKTVALVGRSGSGKSTIANLLTRF------------YDIDEGEILLDGHDL 407 (582)
T ss_pred EEEEEEEEecCCCCCccccC--ceEEeCCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCceEEECCEEh
Confidence 66788888886543346765 9999999999999999999999999999999 999999999999765
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHHH---------HHHHH-----------HHHhccC
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVKE---------LAQML-----------ERQFNGN 233 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~~---------l~~~~-----------~~~ls~g 233 (441)
.......++ ..+.+.+|..++|. .|+++|+.++. ..+.+ +.+.. ...||||
T Consensus 408 ~~~~~~~~~--~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 408 RDYTLASLR--NQVALVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred hhcCHHHHH--hhceEEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 433222222 33555555556665 69999998742 11111 11111 1348999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| |++||+.....+.+.+.+...+ ++|+++|+ +.. .+.+|++.++ ++|+
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr-----~~~-~~~~D~Ii~l---~~g~ 555 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR-----LST-IEKADEILVV---EDGE 555 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc-----hHH-HHhCCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999888544 99999999 533 3568999888 8999
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.++...
T Consensus 556 i~e~g~~~~ 564 (582)
T PRK11176 556 IVERGTHAE 564 (582)
T ss_pred EEEeCCHHH
Confidence 999887443
No 228
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.7e-23 Score=220.17 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=141.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC--CCCcccC
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI--GQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp--~~G~i~~ 174 (441)
++|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++| ++|+|.+
T Consensus 3 ~~~l~~~nl~~~~~~~--~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~~~G~i~~ 66 (506)
T PRK13549 3 EYLLEMKNITKTFGGV--KALDN--VSLKVRAGEIVSLCGENGAGKSTLMKVLSGV------------YPHGTYEGEIIF 66 (506)
T ss_pred CceEEEeeeEEEeCCe--Eeecc--eeEEEeCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCeEEEE
Confidence 3578899999999764 46765 9999999999999999999999999999999 776 7999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------------HHHHH---------HHHHHHHhc
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------------LVKEL---------AQMLERQFN 231 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------------~~~~l---------~~~~~~~ls 231 (441)
+|.......... ..+..+.+.++...+++.+|+.+|+.+... .+.++ .+.....||
T Consensus 67 ~g~~~~~~~~~~-~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 145 (506)
T PRK13549 67 EGEELQASNIRD-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLG 145 (506)
T ss_pred CCEECCCCCHHH-HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCC
Confidence 997542111000 011234444444467788999999876421 01111 123345799
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
+||+||+.+ +|+|| +++||+..+..+.++|+++.. .+||+++|+ +......||++.++ +
T Consensus 146 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~-----~~~~~~~~d~v~~l---~ 217 (506)
T PRK13549 146 LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK-----LNEVKAISDTICVI---R 217 (506)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCc-----HHHHHHhcCEEEEE---E
Confidence 999999875 99999 999999999999999988743 389999999 77777789999998 7
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|.++..+.
T Consensus 218 ~G~i~~~~~ 226 (506)
T PRK13549 218 DGRHIGTRP 226 (506)
T ss_pred CCEEeeecc
Confidence 888876654
No 229
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.8e-23 Score=198.21 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=130.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-----CCCCcccCCc
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-----IGQGAITIPG 176 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-----p~~G~i~~~G 176 (441)
+.|+++.|++. .++++ ++|++.+|++++|+|+||||||||+|+|+|+ .. |.+|+|.++|
T Consensus 8 ~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~------------~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 8 VKNLNLWYGSK--QILFD--INLDIYKREVTAFIGPSGCGKSTFLRCFNRM------------NDFVPNCKVKGELDIDG 71 (251)
T ss_pred eeeEEEEECCe--eeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh------------cccCCCCCcceEEEECC
Confidence 45666666543 35655 9999999999999999999999999999998 65 4699999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------H----HHHHH-------------HHHHHHh
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------L----VKELA-------------QMLERQF 230 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~----~~~l~-------------~~~~~~l 230 (441)
.............+..+.+.++...+|.. |+.+|+.+... . +..+. +.....|
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 150 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFEL 150 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhC
Confidence 75422111101112234444444455654 88888875421 0 11111 1123468
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+||+||+++ +|+|| +++||+..++.+.++|++++.. +||+++|+ +....+.||++.++ +
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~-----~~~~~~~~d~i~~l---~ 222 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS-----MKQAKKVSDRVAFF---Q 222 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHhhcCEEEEE---E
Confidence 9999988765 99999 9999999999999999887543 89999999 77776789999999 8
Q ss_pred CCCeeeCCh
Q 013511 299 SGGVVSRNS 307 (441)
Q Consensus 299 ~g~vv~~~~ 307 (441)
+|.++..+.
T Consensus 223 ~G~i~~~~~ 231 (251)
T PRK14244 223 SGRIVEYNT 231 (251)
T ss_pred CCEEEEeCC
Confidence 888887654
No 230
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=4.2e-23 Score=177.88 Aligned_cols=197 Identities=17% Similarity=0.269 Sum_probs=151.0
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+.++|+++.|+.. .++.+ ++++...|+.+.++||+|+|||||+|.|.=+ .-|.+|++.+.|.-.
T Consensus 3 irv~~in~~yg~~--q~lfd--i~l~~~~getlvllgpsgagkssllr~lnll------------e~p~sg~l~ia~~~f 66 (242)
T COG4161 3 IQLNGINCFYGAH--QALFD--ITLDCPEGETLVLLGPSGAGKSSLLRVLNLL------------EMPRSGTLNIAGNHF 66 (242)
T ss_pred eEEcccccccccc--hheee--eeecCCCCCEEEEECCCCCchHHHHHHHHHH------------hCCCCCeEEeccccc
Confidence 4578899999987 46655 8999999999999999999999999999888 889999998877522
Q ss_pred e---eeccC---cCCCCCCCCcccceEEEecccCccCCHHHHHH----------------H-----HHHHHHHHHHHhcc
Q 013511 180 A---TPIEL---PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------------L-----VKELAQMLERQFNG 232 (441)
Q Consensus 180 ~---~~~~~---~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------------~-----~~~l~~~~~~~ls~ 232 (441)
. .+.++ .++...|++| +...+++|+|+.+|+--..- + +.+++++++-.|||
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvf--qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsg 144 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVF--QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSG 144 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhh--hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceeccc
Confidence 1 11111 1223344554 44578999999999743210 1 23345677778999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
||+||+++ +++|| ++.|||+-...+.++|+++..+ +-++++|+ .+-+.+.+.+|..+ ..
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthe-----v~va~k~as~vvym---e~ 216 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE-----VEVARKTASRVVYM---EN 216 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEee-----hhHHHhhhhheEee---ec
Confidence 99999987 99999 9999999999999999999876 66778999 66666778998888 89
Q ss_pred CCeeeCCh-HHHHHHHHHHHHHHh
Q 013511 300 GGVVSRNS-KVRQKARSYRIREYF 322 (441)
Q Consensus 300 g~vv~~~~-~~~~~~r~~~~~~yf 322 (441)
|++++.++ ......+.+.++.|.
T Consensus 217 g~ive~g~a~~ft~p~te~f~~yl 240 (242)
T COG4161 217 GHIVEQGDASCFTEPQTEAFKNYL 240 (242)
T ss_pred CeeEeecchhhccCccHHHHHHHh
Confidence 99999876 444556666777775
No 231
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.87 E-value=4.5e-23 Score=219.99 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=149.5
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+++.|++. ..++++ +||++++|++++|+||+|||||||+++|+++ .||.+|+|.++|.++
T Consensus 329 I~f~~vsf~y~~~-~~vl~~--is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~------------~~~~~G~I~idg~dI 393 (567)
T COG1132 329 IEFENVSFSYPGK-KPVLKD--ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL------------YDPTSGEILIDGIDI 393 (567)
T ss_pred EEEEEEEEEcCCC-CccccC--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCeEEECCEeh
Confidence 6788899999852 246765 9999999999999999999999999999999 999999999999887
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHH-----------HHHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQML-----------ERQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~-----------~~~ls~g~ 234 (441)
.......++...++. +|..++|. -|+++|+.++.. .+.+ +.... ...||+||
T Consensus 394 ~~i~~~~lr~~I~~V--~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ 470 (567)
T COG1132 394 RDISLDSLRKRIGIV--SQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470 (567)
T ss_pred hhcCHHHHHHhccEE--cccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence 655444444444444 45556777 799999998742 1111 11111 13599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+++|......+.+.++++..+ |+++++|. +.... .+|++.|+ ++|++
T Consensus 471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHR-----lsti~-~aD~IiVl---~~G~i 541 (567)
T COG1132 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHR-----LSTIK-NADRIIVL---DNGRI 541 (567)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEecc-----HhHHH-hCCEEEEE---ECCEE
Confidence 999876 99999 9999999999999999876655 88889999 75554 58999999 99999
Q ss_pred eeCChHHHHHHHHHHHHHHh
Q 013511 303 VSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~yf 322 (441)
++.+....-..+...+++.+
T Consensus 542 ~e~G~h~eLl~~~g~y~~l~ 561 (567)
T COG1132 542 VERGTHEELLAKGGLYARLY 561 (567)
T ss_pred EEecCHHHHHHcCCHHHHHH
Confidence 99997554333333444444
No 232
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=9.5e-23 Score=176.84 Aligned_cols=172 Identities=15% Similarity=0.211 Sum_probs=127.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++.++.+.-++. .++++ +||.+.+|++++|.||+|||||||+|+++++ ..|++|++++.|..
T Consensus 3 lle~kq~~y~a~~a--~il~~--isl~v~~Ge~iaitGPSG~GKStllk~va~L------------isp~~G~l~f~Ge~ 66 (223)
T COG4619 3 LLELKQVGYLAGDA--KILNN--ISLSVRAGEFIAITGPSGCGKSTLLKIVASL------------ISPTSGTLLFEGED 66 (223)
T ss_pred chHHHHHHhhcCCC--eeecc--eeeeecCCceEEEeCCCCccHHHHHHHHHhc------------cCCCCceEEEcCcc
Confidence 35566665444443 46655 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------HHH----------HHHHHHHHhccCccceee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------VKE----------LAQMLERQFNGNAESRAA 239 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------~~~----------l~~~~~~~ls~g~~~r~~ 239 (441)
........++ ..+.+..+...+||. |++||+.|.-.. ..+ ....-...||||++||++
T Consensus 67 vs~~~pea~R--q~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriA 143 (223)
T COG4619 67 VSTLKPEAYR--QQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIA 143 (223)
T ss_pred ccccChHHHH--HHHHHHHcCcccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHH
Confidence 5443222222 334555555678886 899999775322 111 123334579999999987
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcC-C-C-EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFK-A-N-VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~-~-~-~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+ |++|| |+.||+.+.+.+.++|-.+- . + .++.+||+ =++..+.++++.-+
T Consensus 144 liR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd-----~dqa~rha~k~itl 207 (223)
T COG4619 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHD-----KDQAIRHADKVITL 207 (223)
T ss_pred HHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecC-----hHHHhhhhheEEEe
Confidence 5 99999 99999999998888887764 3 2 88889999 56666777876555
No 233
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.86 E-value=1.8e-23 Score=219.36 Aligned_cols=185 Identities=9% Similarity=0.035 Sum_probs=135.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~------------~~p~~G~i~~~~~~ 66 (490)
T PRK10938 3 SLQISQGTFRLSDT--KTLQL--PSLTLNAGDSWAFVGANGSGKSALARALAGE------------LPLLSGERQSQFSH 66 (490)
T ss_pred eEEEEeEEEEcCCe--eeccc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCceEEECCcc
Confidence 67888999999764 36765 9999999999999999999999999999999 99999999988854
Q ss_pred eeeeccCcCCCCCCCCcccceEEEe------cccCccCCHHHHH---HHH---------HHHHHHHHHHhccCccceeee
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFF------GHATPSNNVELYK---VLV---------KELAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~------g~~tv~en~~~~~---~~~---------~~l~~~~~~~ls~g~~~r~~~ 240 (441)
.............++.++.+...++ ..+++.+|+.+.. ..+ ..+.+.....||+||+||+++
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 67 ITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred cccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHH
Confidence 3211100111112333333221111 1356777653211 111 122344556799999999876
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+..++.+.+++++++. .+||+++|+ +....+.||++.++ ++|.++..+.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~-----~~~~~~~~d~v~~l---~~G~i~~~~~ 218 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR-----FDEIPDFVQFAGVL---ADCTLAETGE 218 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHHHhhCCEEEEE---ECCEEEEeCC
Confidence 99999 999999999999999998853 389999999 77777889999999 7888877654
No 234
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=3.9e-23 Score=194.98 Aligned_cols=183 Identities=15% Similarity=0.185 Sum_probs=131.6
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|
T Consensus 5 ~~~i~~~~l~~~~~~~--~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g 68 (225)
T PRK10247 5 SPLLQLQNVGYLAGDA--KILNN--ISFSLRAGEFKLITGPSGCGKSTLLKIVASL------------ISPTSGTLLFEG 68 (225)
T ss_pred CceEEEeccEEeeCCc--eeeec--cEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCeEEECC
Confidence 4578899999999764 46765 9999999999999999999999999999999 899999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHHHH----------HHHHHHHhccCccce
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVKEL----------AQMLERQFNGNAESR 237 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~~l----------~~~~~~~ls~g~~~r 237 (441)
........... ...+.+.++...+|+ .|+.+|+.+... .+..+ .+.....||+|++||
T Consensus 69 ~~~~~~~~~~~--~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr 145 (225)
T PRK10247 69 EDISTLKPEIY--RQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQR 145 (225)
T ss_pred EEcCcCCHHHH--HhccEEEeccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHH
Confidence 64322111111 123444444445666 499999875321 11111 122334589999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +|+|| ++++|+..++.+.++++++. ..+||+++|+ +... ..||++.++ .++++.+
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~-----~~~~-~~~d~i~~l--~~~~~~~ 217 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD-----KDEI-NHADKVITL--QPHAGEM 217 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-----hHHH-HhCCEEEEE--ecccchH
Confidence 765 99999 99999999999999999874 3489999999 5554 358987776 2344444
Q ss_pred eCC
Q 013511 304 SRN 306 (441)
Q Consensus 304 ~~~ 306 (441)
+.+
T Consensus 218 ~~~ 220 (225)
T PRK10247 218 QEA 220 (225)
T ss_pred hhh
Confidence 433
No 235
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.86 E-value=2.5e-23 Score=227.55 Aligned_cols=185 Identities=15% Similarity=0.227 Sum_probs=140.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++....++++ +||++++|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|.+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~--isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~ 542 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIEN--FSLTLQPGQRVALVGGSGSGKSTIAKLVAGL------------YQPWSGEILFDGIP 542 (710)
T ss_pred eEEEEEEEEecCCCCCCcccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEe
Confidence 367788999997643457766 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHH---------HHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVK---------ELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~---------~l~~~~-----------~~~ls~g 233 (441)
........++ ..+.+.+|..++|. .|++||+.++.. .+. ++.+.. ...||||
T Consensus 543 i~~~~~~~lr--~~i~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGG 619 (710)
T TIGR03796 543 REEIPREVLA--NSVAMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGG 619 (710)
T ss_pred HHHCCHHHHH--hheeEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHH
Confidence 6433222233 33444555555664 599999976521 111 111111 1249999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
|+||+++ +|+|| |++||....+.+.+.+++. ..++|+++|+ +... +.+|++.++ ++|++
T Consensus 620 QrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~-~~T~IiitHr-----l~~i-~~~D~Iivl---~~G~i 689 (710)
T TIGR03796 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR-GCTCIIVAHR-----LSTI-RDCDEIIVL---ERGKV 689 (710)
T ss_pred HHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc-CCEEEEEecC-----HHHH-HhCCEEEEE---eCCEE
Confidence 9999876 99999 9999999999999999873 4588999999 5544 468999999 89999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
++.++...
T Consensus 690 ~~~G~~~~ 697 (710)
T TIGR03796 690 VQRGTHEE 697 (710)
T ss_pred EEecCHHH
Confidence 98887443
No 236
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.86 E-value=1.8e-23 Score=193.83 Aligned_cols=168 Identities=15% Similarity=0.131 Sum_probs=123.0
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ +.|++|+|.++|.....
T Consensus 3 i~~l~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (201)
T cd03231 3 ADELTCERDGR--ALFSG--LSFTLAAGEALQVTGPNGSGKTTLLRILAGL------------SPPLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEeCCc--eeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEeccc
Confidence 45666667553 35654 9999999999999999999999999999999 99999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHHHHHhccCccceeee-------
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQMLERQFNGNAESRAAG------- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~~~~ls~g~~~r~~~------- 240 (441)
. .. .....+.+.++...++++.|+.+|+.++.. .+.+ +.+.....||+|++||+++
T Consensus 67 ~-~~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 143 (201)
T cd03231 67 Q-RD--SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSG 143 (201)
T ss_pred c-cH--HhhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 1 11 112334444444567778899999876521 1111 1233446799999988765
Q ss_pred ---EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 241 ---MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 241 ---lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
+|+|| ++++|+..++.+.+++++++. .++|+++|+ .......++++.+
T Consensus 144 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~-----~~~~~~~~~~~~~ 197 (201)
T cd03231 144 RPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQ-----DLGLSEAGARELD 197 (201)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----chhhhhccceeEe
Confidence 99999 999999999999999988743 388999998 4444456666543
No 237
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.86 E-value=2.6e-23 Score=197.82 Aligned_cols=180 Identities=21% Similarity=0.260 Sum_probs=128.7
Q ss_pred HHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 102 YVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 102 ~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
+.|+++.|++.. ..++++ ++|++.+|++++|+|+||||||||+++|+|+ +.|.+|+|.++|....
T Consensus 3 i~~l~~~~~~~~~~~~l~~--i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~ 68 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKG--LSLTIPPGKTVALVGSSGCGKSTVVSLLERF------------YDPTSGEILLDGVDIR 68 (238)
T ss_pred EEEEEEecCCCCCccceec--eEEEecCCCEEEEEeCCCCCHHHHHHHHhcc------------CCCCCCEEEECCEehh
Confidence 456666665321 235655 9999999999999999999999999999999 8999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccCcc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGNAE 235 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g~~ 235 (441)
....... ...+.+.++...++. .|+.+|+.+... .. .++.+.+ ...||+|++
T Consensus 69 ~~~~~~~--~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 145 (238)
T cd03249 69 DLNLRWL--RSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK 145 (238)
T ss_pred hcCHHHH--HhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence 1111111 122444444444554 588888765310 11 1111111 246899999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ +.... .||++.++ ++|.++
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~-----~~~~~-~~d~v~~l---~~G~i~ 216 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHR-----LSTIR-NADLIAVL---QNGQVV 216 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHh-hCCEEEEE---ECCEEE
Confidence 88765 99999 999999999999999998763 389999999 66654 68999888 888888
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 217 ~~~~ 220 (238)
T cd03249 217 EQGT 220 (238)
T ss_pred EeCC
Confidence 7654
No 238
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=2.5e-23 Score=201.11 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=142.9
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQGA 171 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~G~ 171 (441)
..++++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++| ++|+
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~sG~ 77 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKN--INMMVHEKQVTALIGPSGCGKSTFLRCFNRM------------HDLYPGNHYEGE 77 (265)
T ss_pred CceEEEEEEEEEECCe--eeeee--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------cCCCCCCCcccE
Confidence 3467888999988754 46765 9999999999999999999999999999998 764 6899
Q ss_pred ccCCceeeeee-cc-CcCCCCCCCCcccceEEEecccCccCCHHHHHH------------HHHHHH-------------H
Q 013511 172 ITIPGCIAATP-IE-LPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKELA-------------Q 224 (441)
Q Consensus 172 i~~~G~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l~-------------~ 224 (441)
|.++|...... .. ........+.+.++...+|.. |+.+|+.+... .+.... +
T Consensus 78 i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 78 IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred EEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 99988643210 00 011112234444444455664 89999876421 111111 1
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.....||+|++||+.+ +|+|| ++++|+..++.+.+++++++.. +||+++|+ ++.....||++.
T Consensus 157 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~-----~~~~~~~~d~i~ 231 (265)
T PRK14252 157 DLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN-----MQQAARVSDYTA 231 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecC-----HHHHHHhCCEEE
Confidence 1223589999988765 99999 9999999999999999988644 89999999 777777899999
Q ss_pred EEEecCCCCeeeCChHHHHH--HHHHHHHHHhcC
Q 013511 293 VVKLQKSGGVVSRNSKVRQK--ARSYRIREYFYG 324 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~~~~--~r~~~~~~yf~g 324 (441)
++ +.|+++..+...... .....+++|+.+
T Consensus 232 ~l---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 262 (265)
T PRK14252 232 YM---YMGELIEFGATDTIFIKPKNKQTEDYITG 262 (265)
T ss_pred EE---ECCEEEEeCCHHHHHhCCCCHHHHHHHhh
Confidence 99 889888776533221 123345566644
No 239
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.86 E-value=2.7e-23 Score=212.89 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=148.6
Q ss_pred CchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC----CCc
Q 013511 98 PMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG----QGA 171 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~----~G~ 171 (441)
++++++||++.|.... ..++++ +||++.+||+++|+|.+||||||+++.|.|+ +++. +|+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~--vsf~v~~GE~lgIvGESGsGKSt~a~~i~gl------------l~~~~~~~~G~ 69 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRD--VSFEVEPGEILGIVGESGSGKSTLALALMGL------------LPEGGRITSGE 69 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeec--ceEEecCCcEEEEEcCCCCCHHHHHHHHhcc------------CCCCCcccceE
Confidence 4677788877775432 246765 9999999999999999999999999999999 8877 799
Q ss_pred ccCCceeeeeeccCcC----CCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-----------HH
Q 013511 172 ITIPGCIAATPIELPI----DPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL-----------AQ 224 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l-----------~~ 224 (441)
|.++|.+.......+. ..+.++.||.|...|-+.+++.+.+.-.... ..++ .+
T Consensus 70 I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~ 149 (539)
T COG1123 70 VILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRD 149 (539)
T ss_pred EEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhc
Confidence 9999986654443322 1334577888877777777776654321110 0011 13
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCC
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
+++++|||||+||+.+ ||.|| |++||...+..++++|+++..+ .++++||| +.-+.+.||+
T Consensus 150 ~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD-----l~Vva~~aDr 224 (539)
T COG1123 150 RYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD-----LGVVAELADR 224 (539)
T ss_pred cCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC-----HHHHHHhcCe
Confidence 4788999999999865 99999 9999999999999999999743 89999999 8888889999
Q ss_pred eEEEEecCCCCeeeCChHH
Q 013511 291 VDVVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~~~~ 309 (441)
+.|| +.|.+++.++..
T Consensus 225 v~Vm---~~G~iVE~G~~~ 240 (539)
T COG1123 225 VVVM---YKGEIVETGPTE 240 (539)
T ss_pred EEEE---ECCEEEEecCHH
Confidence 9999 999999998743
No 240
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=4.7e-23 Score=220.83 Aligned_cols=195 Identities=16% Similarity=0.213 Sum_probs=141.2
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+++.|.+. ..++++ +||++++|++++|+||+|||||||+++|+|+ . |.+|+|.++|.+.
T Consensus 350 i~~~~vsf~~~~~-~~vL~~--i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~------------~-p~~G~I~i~g~~i 413 (588)
T PRK11174 350 IEAEDLEILSPDG-KTLAGP--LNFTLPAGQRIALVGPSGAGKTSLLNALLGF------------L-PYQGSLKINGIEL 413 (588)
T ss_pred EEEEeeEEeccCC-Ceeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------C-CCCcEEEECCEec
Confidence 5567776544222 246765 9999999999999999999999999999999 8 9999999999866
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g~ 234 (441)
.......++ ..+.+.+|..++|. .|++||+.++.. .+ .++.... ...|||||
T Consensus 414 ~~~~~~~lr--~~i~~v~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQ 490 (588)
T PRK11174 414 RELDPESWR--KHLSWVGQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQ 490 (588)
T ss_pred ccCCHHHHH--hheEEecCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHH
Confidence 443322333 33445555556665 599999988621 11 1111111 12499999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |++||....+.+.+.++++.. .++|+++|. +... +.+|++.++ ++|++
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHr-----l~~i-~~aD~Iivl---~~G~i 561 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ-----LEDL-AQWDQIWVM---QDGQI 561 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-----hHHH-HhCCEEEEE---eCCeE
Confidence 999876 99999 999999999999999998855 499999999 5433 568999999 89999
Q ss_pred eeCChHHHHHHHHHHHHHHh
Q 013511 303 VSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~yf 322 (441)
++.++......+...+++.+
T Consensus 562 ~e~G~~~eL~~~~~~y~~l~ 581 (588)
T PRK11174 562 VQQGDYAELSQAGGLFATLL 581 (588)
T ss_pred eecCCHHHHHhcchHHHHHH
Confidence 99887544333333444443
No 241
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.86 E-value=1.7e-23 Score=223.24 Aligned_cols=196 Identities=21% Similarity=0.257 Sum_probs=144.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++....++++ +||++++|++++|+||||||||||+++|+|+ .+|.+|+|.++|..
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~--i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~------------~~p~~G~I~i~g~~ 403 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKG--LSLQIKAGEKVALLGRTGCGKSTLLQLLTRA------------WDPQQGEILLNGQP 403 (574)
T ss_pred eEEEEEEEEECCCCCCcceec--ceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEE
Confidence 477888999996532346765 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHH----------HHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQM----------LERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~----------~~~~ls~g~ 234 (441)
........++ ..+.+.+|..++|. .|++||+.++.. .+.+ +.+. -...||+||
T Consensus 404 i~~~~~~~~r--~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGq 480 (574)
T PRK11160 404 IADYSEAALR--QAISVVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGE 480 (574)
T ss_pred hhhCCHHHHH--hheeEEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHH
Confidence 5433222222 33444555556665 599999987531 1111 1111 113499999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+++|+...+.+.+.++++..+ ++|+++|+ +... +.+|++.++ ++|++
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr-----~~~~-~~~d~i~~l---~~G~i 551 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHR-----LTGL-EQFDRICVM---DNGQI 551 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC-----hhHH-HhCCEEEEE---eCCeE
Confidence 999876 99999 9999999999999999988654 99999999 5444 458999888 89999
Q ss_pred eeCChHHHHHHHHHHHHH
Q 013511 303 VSRNSKVRQKARSYRIRE 320 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~ 320 (441)
++.++......+...+++
T Consensus 552 ~~~g~~~~l~~~~g~y~~ 569 (574)
T PRK11160 552 IEQGTHQELLAQQGRYYQ 569 (574)
T ss_pred EEeCCHHHHHhcCcHHHH
Confidence 988874432223333444
No 242
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.86 E-value=2.6e-23 Score=192.63 Aligned_cols=170 Identities=16% Similarity=0.238 Sum_probs=125.3
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCcccCCceee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAITIPGCIA 179 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~~~G~~~ 179 (441)
+.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ . .|.+|+|.++|...
T Consensus 3 ~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~p~~G~i~~~g~~~ 66 (200)
T cd03217 3 IKDLHVSVGGK--EILKG--VNLTIKKGEVHALMGPNGSGKSTLAKTIMGH------------PKYEVTEGEILFKGEDI 66 (200)
T ss_pred EEEEEEEeCCE--Eeeec--cceEECCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCCCccEEEECCEEC
Confidence 45666666643 36655 9999999999999999999999999999997 5 68999999999754
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCC
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGW 248 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~ 248 (441)
....... ..+..+.+.++...+++..++.+++ ......||+|++||+++ +|+|| +++
T Consensus 67 ~~~~~~~-~~~~~i~~v~q~~~~~~~~~~~~~l-----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~ 134 (200)
T cd03217 67 TDLPPEE-RARLGIFLAFQYPPEIPGVKNADFL-----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG 134 (200)
T ss_pred CcCCHHH-HhhCcEEEeecChhhccCccHHHHH-----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3211111 1112244444444556666655443 22335789999887765 99999 999
Q ss_pred CCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhc-CCCCeEEEEecCCCCeeeCCh
Q 013511 249 IEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLK-NRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 249 lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~-~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+..++.+.++++++.. .+||+++|+ +....+ .+|++.++ ++|.+++.+.
T Consensus 135 LD~~~~~~l~~~L~~~~~~~~tiii~sh~-----~~~~~~~~~d~i~~l---~~G~i~~~~~ 188 (200)
T cd03217 135 LDIDALRLVAEVINKLREEGKSVLIITHY-----QRLLDYIKPDRVHVL---YDGRIVKSGD 188 (200)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecC-----HHHHHHhhCCEEEEE---ECCEEEEEcc
Confidence 999999999999998853 489999999 665555 68999888 7888887664
No 243
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.2e-23 Score=197.02 Aligned_cols=180 Identities=19% Similarity=0.309 Sum_probs=128.5
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
++.|+++.|++.+ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|....
T Consensus 4 ~~~~l~~~~~~~~-~~l~~--isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~ 68 (229)
T cd03254 4 EFENVNFSYDEKK-PVLKD--INFSIKPGETVAIVGPTGAGKTTLINLLMRF------------YDPQKGQILIDGIDIR 68 (229)
T ss_pred EEEEEEEecCCCC-ccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCEeHH
Confidence 3456666775321 35655 9999999999999999999999999999999 9999999999996442
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccCcc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGNAE 235 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g~~ 235 (441)
....... ...+.+.++...++.. |+.+|+.++.. .+ ..+.+.. ...||+||+
T Consensus 69 ~~~~~~~--~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 69 DISRKSL--RSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred HcCHHHH--hhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 2111111 2223344444455554 88888765411 11 1111111 246999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+.+ +|+|| +++||+..++.+.++++++... +||+++|+ +.... .|+++.++ ++|.++
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~-~~d~i~~l---~~g~~~ 216 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHR-----LSTIK-NADKILVL---DDGKII 216 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecC-----HHHHh-hCCEEEEE---eCCeEE
Confidence 88765 99999 9999999999999999988543 89999999 55543 48999888 888887
Q ss_pred eCCh
Q 013511 304 SRNS 307 (441)
Q Consensus 304 ~~~~ 307 (441)
..++
T Consensus 217 ~~~~ 220 (229)
T cd03254 217 EEGT 220 (229)
T ss_pred EeCC
Confidence 6554
No 244
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.86 E-value=1.9e-23 Score=196.35 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=127.8
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
+++|+++.|++....++++ +||++.+|++++|+||||||||||+|+|+|+ ..|.+|+|.++|....
T Consensus 4 ~~~~l~~~~~~~~~~~l~~--i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~ 69 (221)
T cd03244 4 EFKNVSLRYRPNLPPVLKN--ISFSIKPGEKVGIVGRTGSGKSSLLLALFRL------------VELSSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEecCCCCcccccc--eEEEECCCCEEEEECCCCCCHHHHHHHHHcC------------CCCCCCEEEECCEEhH
Confidence 3456666775432246655 9999999999999999999999999999999 8999999999997542
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------HHH-----HHHH-----------HHHHHhccCccc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------LVK-----ELAQ-----------MLERQFNGNAES 236 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------~~~-----~l~~-----------~~~~~ls~g~~~ 236 (441)
....... ...+.+.++...++. .|+.+|+.++.. ..+ +... .....||+|++|
T Consensus 70 ~~~~~~~--~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 70 KIGLHDL--RSRISIIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred hCCHHHH--hhhEEEECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 2111111 223344444444555 488888754310 011 1111 123468999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|+.+ +|+|| ++++|+..++.+.++++++... +||+++|+ +.... .|+++.++ ++|.++.
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~-~~d~i~~l---~~g~~~~ 217 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHR-----LDTII-DSDRILVL---DKGRVVE 217 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCC-----HHHHh-hCCEEEEE---ECCeEEe
Confidence 8765 99999 9999999999999999987544 89999999 55554 48998888 7787765
Q ss_pred CC
Q 013511 305 RN 306 (441)
Q Consensus 305 ~~ 306 (441)
.+
T Consensus 218 ~~ 219 (221)
T cd03244 218 FD 219 (221)
T ss_pred cC
Confidence 43
No 245
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.3e-23 Score=197.89 Aligned_cols=185 Identities=13% Similarity=0.152 Sum_probs=133.9
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-----CCcc
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-----QGAI 172 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-----~G~i 172 (441)
+++++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++|+ .|+|
T Consensus 6 ~~l~~~nl~~~~~~~--~il~~--is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl------------~~~~g~i~~~G~i 69 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ--KILEG--VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM------------NELESEVRVEGRV 69 (261)
T ss_pred ceEEEeeEEEEeCCe--eEeec--eEEEEcCCcEEEEECCCCCCHHHHHHHHhcc------------cCCCCCccccceE
Confidence 367778888888654 46665 9999999999999999999999999999999 7775 6788
Q ss_pred cCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHHH-------------HHHH
Q 013511 173 TIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKELA-------------QMLE 227 (441)
Q Consensus 173 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l~-------------~~~~ 227 (441)
.++|................+.+.++...+|+ .|+.+|+.+.... +.++. +...
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 148 (261)
T PRK14258 70 EFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSA 148 (261)
T ss_pred EECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 88776431110010111223444444445666 7999998764210 11111 1112
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
..||+||+||+++ +|+|| ++++|+..++.+.+++++++ ..+||+++|+ +....+.||++.+
T Consensus 149 ~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~-----~~~i~~~~d~i~~ 223 (261)
T PRK14258 149 LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN-----LHQVSRLSDFTAF 223 (261)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHhcCEEEE
Confidence 4589999988765 99999 99999999999999998863 2489999999 7777778999999
Q ss_pred EEecCC-----CCeeeCCh
Q 013511 294 VKLQKS-----GGVVSRNS 307 (441)
Q Consensus 294 l~l~~~-----g~vv~~~~ 307 (441)
+ ++ |.++..++
T Consensus 224 l---~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 224 F---KGNENRIGQLVEFGL 239 (261)
T ss_pred E---ccCCCcCceEEEeCC
Confidence 9 77 88887765
No 246
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.86 E-value=3.4e-23 Score=222.63 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=143.3
Q ss_pred CCCchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 96 ETPMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
..+|++++|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|.|.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~--is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl------------l~p~~G~i~ 74 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRN--LSFSLQRGETLAIVGESGSGKSVTALALMRL------------LEQAGGLVQ 74 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEe--eEEEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCCeEEE
Confidence 35689999999999632 1246765 9999999999999999999999999999999 999999999
Q ss_pred CCceeeee-------e---ccCc---C-CCCCCCCcccceEEEecccCccCCHHHHHHH------------HHHH-----
Q 013511 174 IPGCIAAT-------P---IELP---I-DPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKEL----- 222 (441)
Q Consensus 174 ~~G~~~~~-------~---~~~~---~-~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~l----- 222 (441)
++|..... . .... . ....++.+|.+...+++.+|+.+|+.+.... +.++
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 154 (623)
T PRK10261 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVR 154 (623)
T ss_pred ECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCC
Confidence 98863310 0 0000 0 1123444454433567888999999764321 1111
Q ss_pred -------HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHH
Q 013511 223 -------AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSML 281 (441)
Q Consensus 223 -------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l 281 (441)
.+.....||+||+||+.+ ||+|| |++||+..++.+.++++++.. .+||++||+ +
T Consensus 155 L~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHd-----l 229 (623)
T PRK10261 155 IPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD-----M 229 (623)
T ss_pred CCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-----H
Confidence 223345699999999876 99999 999999999999999998852 389999999 8
Q ss_pred HHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 282 RDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 282 ~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
..+.+.||++.++ ++|.+++.+.
T Consensus 230 ~~~~~~adri~vl---~~G~i~~~g~ 252 (623)
T PRK10261 230 GVVAEIADRVLVM---YQGEAVETGS 252 (623)
T ss_pred HHHHHhCCEEEEe---eCCeecccCC
Confidence 8887889999999 8898887654
No 247
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.86 E-value=1.3e-22 Score=192.15 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=121.8
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC----CCCcccCCceeeeeeccCcCCCCCCCCcc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI----GQGAITIPGCIAATPIELPIDPVEGIPLE 196 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp----~~G~i~~~G~~~~~~~~~~~~~~~~~~~~ 196 (441)
++||++.+|++++|+||||||||||+|+|+|+ ++| .+|+|.++|...... .......++.++
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q 69 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGL------------LPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQ 69 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCccCccccEEEECCEechhh--hhhhheeEEEec
Confidence 48999999999999999999999999999999 888 899999999754221 111112233333
Q ss_pred cceEEEecccCccCCHHHHHHH-----------HHH------------HHHHHHHHhccCccceeee----------EEE
Q 013511 197 MPLVYFFGHATPSNNVELYKVL-----------VKE------------LAQMLERQFNGNAESRAAG----------MVI 243 (441)
Q Consensus 197 ~~~~~~~g~~tv~en~~~~~~~-----------~~~------------l~~~~~~~ls~g~~~r~~~----------lIl 243 (441)
.+...++..+|+.+|+.+.... +.+ +.+.....||+|++||+++ +|+
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3322355667887776543211 111 1122345699999988775 999
Q ss_pred eC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 244 NT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 244 DE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
|| ++++|...++.+.++++++.. .+||+++|+ +......+|++.++ ++|.++..++
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 209 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD-----LGVVARIADEVAVM---DDGRIVERGT 209 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEeCC
Confidence 99 999999999999999988743 389999999 77777789999998 8888887655
No 248
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.86 E-value=4.1e-23 Score=185.68 Aligned_cols=151 Identities=19% Similarity=0.237 Sum_probs=113.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
++|+++.|++.+ .++++ ++|++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|.
T Consensus 3 ~~~~~~~~~~~~-~~l~~--i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~~~---- 63 (166)
T cd03223 3 LENLSLATPDGR-VLLKD--LSFEIKPGDRLLITGPSGTGKSSLFRALAGL------------WPWGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEcCCCC-eeeec--CeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCC----
Confidence 345555664321 35655 9999999999999999999999999999999 9999999998873
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD 250 (441)
..+.+.++...++ ..|+.+|+.+. ....||+|++||+.+ +|+|| ++++|
T Consensus 64 ---------~~i~~~~q~~~~~-~~tv~~nl~~~----------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD 123 (166)
T cd03223 64 ---------EDLLFLPQRPYLP-LGTLREQLIYP----------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALD 123 (166)
T ss_pred ---------ceEEEECCCCccc-cccHHHHhhcc----------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccC
Confidence 1122222322333 56888887653 246688888887665 99999 99999
Q ss_pred chhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 251 GVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+..++.+.+++++++ .++|+++|+ +... ..||++.++ ++++
T Consensus 124 ~~~~~~l~~~l~~~~-~tiiivsh~-----~~~~-~~~d~i~~l---~~~~ 164 (166)
T cd03223 124 EESEDRLYQLLKELG-ITVISVGHR-----PSLW-KFHDRVLDL---DGEG 164 (166)
T ss_pred HHHHHHHHHHHHHhC-CEEEEEeCC-----hhHH-hhCCEEEEE---cCCC
Confidence 999999999999884 588999999 4332 468998777 5554
No 249
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.86 E-value=4.7e-23 Score=225.29 Aligned_cols=184 Identities=14% Similarity=0.204 Sum_probs=140.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++++|+..+ .++++ +|+++++|++++|+|+||||||||+|+|+|+ .+|++|+|.++|.+
T Consensus 473 ~I~~~~vsf~y~~~~-~iL~~--isl~i~~G~~vaIvG~SGsGKSTLlklL~gl------------~~p~~G~I~idg~~ 537 (708)
T TIGR01193 473 DIVINDVSYSYGYGS-NILSD--ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF------------FQARSGEILLNGFS 537 (708)
T ss_pred cEEEEEEEEEcCCCC-cceec--eeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCcEEEECCEE
Confidence 366788888896432 46765 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-H-----HHHH---------HHHHH-----------HHHhcc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-V-----LVKE---------LAQML-----------ERQFNG 232 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-~-----~~~~---------l~~~~-----------~~~ls~ 232 (441)
........++ ..+.+.+|..++|. -|++||+.++. . .+.+ +.... ...||+
T Consensus 538 i~~~~~~~lr--~~i~~v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSg 614 (708)
T TIGR01193 538 LKDIDRHTLR--QFINYLPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISG 614 (708)
T ss_pred HHHcCHHHHH--HheEEEecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCH
Confidence 6433222333 33445555556665 49999998862 1 1111 11111 124899
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+||+++ +|+|| |+++|....+.+.+.+++++..++|+++|+ +... +.+|++.++ ++|+
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr-----~~~~-~~~D~i~~l---~~G~ 685 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHR-----LSVA-KQSDKIIVL---DHGK 685 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecc-----hHHH-HcCCEEEEE---ECCE
Confidence 99998876 99999 999999999999999988755699999999 5433 578999999 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
+++.++..
T Consensus 686 i~~~G~~~ 693 (708)
T TIGR01193 686 IIEQGSHD 693 (708)
T ss_pred EEEECCHH
Confidence 99888744
No 250
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=6.3e-23 Score=238.18 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=149.8
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.+.|++++|++|.|++....++++ +||.+.+|++++|+||||||||||+|+|+|+ +.|++|+|.++
T Consensus 1934 ~~~~L~v~nLsK~Y~~~~~~aL~~--ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl------------l~ptsG~I~i~ 1999 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGTSSPAVDR--LCVGVRPGECFGLLGVNGAGKTTTFKMLTGD------------TTVTSGDATVA 1999 (2272)
T ss_pred CCceEEEEEEEEEECCCCceEEEe--eEEEEcCCcEEEEECCCCCcHHHHHHHHhCC------------CCCCccEEEEC
Confidence 345899999999997633357866 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCcc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAE 235 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~ 235 (441)
|....... ...+..+++.++...+++.+|++||+.++... +. +..+.....||+|++
T Consensus 2000 G~~i~~~~---~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqK 2076 (2272)
T TIGR01257 2000 GKSILTNI---SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNK 2076 (2272)
T ss_pred CEECcchH---HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHH
Confidence 97652211 11123355555555788899999999876432 11 112344567999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+++ +|+|| ++++|+..++.++++|++++. .+||++||+ ++++.++||++.++ ++|++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~-----mee~e~lcDrV~IL---~~G~i 2148 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS-----MEECEALCTRLAIM---VKGAF 2148 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEE
Confidence 98765 99999 999999999999999998743 389999999 88888899999999 88888
Q ss_pred eeCChH
Q 013511 303 VSRNSK 308 (441)
Q Consensus 303 v~~~~~ 308 (441)
+..++.
T Consensus 2149 ~~~Gs~ 2154 (2272)
T TIGR01257 2149 QCLGTI 2154 (2272)
T ss_pred EEECCH
Confidence 877753
No 251
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.8e-23 Score=216.56 Aligned_cols=183 Identities=17% Similarity=0.235 Sum_probs=139.5
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
||+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~--~il~~--isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~I~~~g~ 66 (501)
T PRK11288 3 PYLSFDGIGKTFPGV--KALDD--ISFDCRAGQVHALMGENGAGKSTLLKILSGN------------YQPDAGSILIDGQ 66 (501)
T ss_pred ceEEEeeeEEEECCE--EEEee--eeEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCEEEECCE
Confidence 578889999999764 36765 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------------HHHHHH---------HHHHHHhccCc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------------LVKELA---------QMLERQFNGNA 234 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------------~~~~l~---------~~~~~~ls~g~ 234 (441)
..... ......+..+.+.++...+++.+|+.+|+.+... .+.++. +.....||+||
T Consensus 67 ~i~~~-~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (501)
T PRK11288 67 EMRFA-STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQ 145 (501)
T ss_pred ECCCC-CHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHH
Confidence 54211 0000112234444444567888899999876320 011111 23346799999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +......||++.++ +.|.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd-----~~~~~~~~d~i~~l---~~G~ 217 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHR-----MEEIFALCDAITVF---KDGR 217 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCE
Confidence 998876 99999 999999999999999998753 389999999 77777789999988 7787
Q ss_pred eeeC
Q 013511 302 VVSR 305 (441)
Q Consensus 302 vv~~ 305 (441)
++..
T Consensus 218 i~~~ 221 (501)
T PRK11288 218 YVAT 221 (501)
T ss_pred EEee
Confidence 7654
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.86 E-value=5.2e-23 Score=197.20 Aligned_cols=186 Identities=19% Similarity=0.252 Sum_probs=130.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 3 ~~l~~~~l~~~~~~~--~vl~~--vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~~~ 66 (251)
T PRK09544 3 SLVSLENVSVSFGQR--RVLSD--VSLELKPGKILTLLGPNGAGKSTLVRVVLGL------------VAPDEGVIKRNGK 66 (251)
T ss_pred cEEEEeceEEEECCc--eEEEe--EEEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCc
Confidence 467888998888764 36665 9999999999999999999999999999999 9999999988773
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecc--cCccCCHHHH--------HHH-----HHHHHHHHHHHhccCccceeee--
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGH--ATPSNNVELY--------KVL-----VKELAQMLERQFNGNAESRAAG-- 240 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~tv~en~~~~--------~~~-----~~~l~~~~~~~ls~g~~~r~~~-- 240 (441)
.. +.+.++...+++. .++.+|+.+. ... +.++.+.....||+||+||+++
T Consensus 67 ~~-------------i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 67 LR-------------IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred cC-------------EEEeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHH
Confidence 11 1111111122222 1333332211 111 1223344567799999988765
Q ss_pred --------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 --------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 --------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|+|| ++++|+..++.+.++++++. ..+||+++|+ +....+.|+++.++ +. +++..++.
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~-----~~~i~~~~d~i~~l---~~-~i~~~g~~ 204 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHD-----LHLVMAKTDEVLCL---NH-HICCSGTP 204 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-----HHHHHHhCCEEEEE---CC-ceEeeCCH
Confidence 99999 99999999999999998874 2489999999 77777789998887 44 56666543
Q ss_pred HHHHHHHHHHHHHh
Q 013511 309 VRQKARSYRIREYF 322 (441)
Q Consensus 309 ~~~~~r~~~~~~yf 322 (441)
... .....+.++|
T Consensus 205 ~~~-~~~~~~~~~~ 217 (251)
T PRK09544 205 EVV-SLHPEFISMF 217 (251)
T ss_pred HHH-hCCHHHHHHh
Confidence 221 2233455665
No 253
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.86 E-value=2.8e-23 Score=195.26 Aligned_cols=178 Identities=16% Similarity=0.236 Sum_probs=128.6
Q ss_pred hHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 101 SYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 101 ~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++.|+++.|+... ..++++ +||++.+|++++|+|+||||||||+++|+|+ +.|.+|+|.++|..
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~--vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~g~~ 68 (220)
T TIGR02982 3 SIRNLNHYYGHGSLRKQVLFD--INLEINPGEIVILTGPSGSGKTTLLTLIGGL------------RSVQEGSLKVLGQE 68 (220)
T ss_pred EEEEEEEEccCCCcceeEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEE
Confidence 3455666665321 246655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCc-CCCCCCCCcccceEEEecccCccCCHHHHHHH------------HHH---------HHHHHHHHhccCccc
Q 013511 179 AATPIELP-IDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------VKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------~~~---------l~~~~~~~ls~g~~~ 236 (441)
........ .....++.+.++...+|+..|+.+|+.+.... +.+ ..+.....||+|++|
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~q 148 (220)
T TIGR02982 69 LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQ 148 (220)
T ss_pred hHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHH
Confidence 42211000 01123445555555677888999998764321 111 123344569999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+.+ +|+|| ++++|...++.+.++++++.. .+||+++|+ +. ..+.||++.++ +.|.
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~-----~~-~~~~~d~v~~l---~~g~ 218 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHD-----NR-ILDVADRIVHM---EDGK 218 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HH-HHhhCCEEEEE---ECCE
Confidence 8765 99999 999999999999999988753 499999999 54 33578998888 6654
No 254
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5.2e-23 Score=195.42 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=127.9
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+ .++++ ++|++.+|++++|+||||||||||+++|+|+ +.|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~~-~~l~~--i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~v~~~g~~~~~ 67 (236)
T cd03253 3 FENVTFAYDPGR-PVLKD--VSFTIPAGKKVAIVGPSGSGKSTILRLLFRF------------YDVSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEeCCCC-ceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCEEEECCEEhhh
Confidence 445666664322 35654 9999999999999999999999999999999 89999999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccCccc
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGNAES 236 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g~~~ 236 (441)
..... ....+.+.++...+|. .|+.+|+.+... .+ .+..... ...||+|++|
T Consensus 68 ~~~~~--~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~ 144 (236)
T cd03253 68 VTLDS--LRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ 144 (236)
T ss_pred CCHHH--HHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence 11111 1223444444445664 688888865311 01 1111111 2369999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
|+++ +|+|| ++++|+..++.+.+++++++.. +||+++|+ +.... .|+++.++ ++|.++.
T Consensus 145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~-----~~~~~-~~d~~~~l---~~g~i~~ 215 (236)
T cd03253 145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHR-----LSTIV-NADKIIVL---KDGRIVE 215 (236)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCC-----HHHHH-hCCEEEEE---ECCEEEe
Confidence 8775 99999 9999999999999999887544 89999999 55553 48998888 7888876
Q ss_pred CCh
Q 013511 305 RNS 307 (441)
Q Consensus 305 ~~~ 307 (441)
.+.
T Consensus 216 ~~~ 218 (236)
T cd03253 216 RGT 218 (236)
T ss_pred eCC
Confidence 654
No 255
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=2.9e-23 Score=201.16 Aligned_cols=183 Identities=14% Similarity=0.131 Sum_probs=131.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC--------CC
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG--------QG 170 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~--------~G 170 (441)
|++++|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|+ +|
T Consensus 1 ml~~~nl~~~~~~~--~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~------------~~p~~~~~~~~~~G 64 (272)
T PRK13547 1 MLTADHLHVARRHR--AILRD--LSLRIEPGRVTALLGRNGAGKSTLLKALAGD------------LTGGGAPRGARVTG 64 (272)
T ss_pred CeEEEEEEEEECCE--eEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCcccccccCCce
Confidence 46677888888654 46665 9999999999999999999999999999999 8887 89
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHH---------HHHH
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKEL---------AQML 226 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l---------~~~~ 226 (441)
+|.++|...............++.++. ..++...|+.+|+.+... .+..+ .+..
T Consensus 65 ~i~~~g~~~~~~~~~~~~~~~~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (272)
T PRK13547 65 DVTLNGEPLAAIDAPRLARLRAVLPQA--AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD 142 (272)
T ss_pred EEEECCEEcccCCHHHHHhhcEEeccc--CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC
Confidence 999999754321111111112333333 233345788888765310 01111 1222
Q ss_pred HHHhccCccce-------------------eeeEEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHH
Q 013511 227 ERQFNGNAESR-------------------AAGMVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRD 283 (441)
Q Consensus 227 ~~~ls~g~~~r-------------------~~~lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~ 283 (441)
...||+|++|| ..++|+|| +++||+..++.+.++++++.. .+||+++|+ +..
T Consensus 143 ~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~-----~~~ 217 (272)
T PRK13547 143 VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD-----PNL 217 (272)
T ss_pred cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHH
Confidence 34588888754 34589999 999999999999999998743 389999999 777
Q ss_pred HhcCCCCeEEEEecCCCCeeeCCh
Q 013511 284 VLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 284 ~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
..+.||++.++ ++|.++..++
T Consensus 218 ~~~~~d~i~~l---~~G~i~~~g~ 238 (272)
T PRK13547 218 AARHADRIAML---ADGAIVAHGA 238 (272)
T ss_pred HHHhCCEEEEE---ECCeEEEecC
Confidence 76789999998 8888887665
No 256
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.85 E-value=4.7e-23 Score=198.32 Aligned_cols=201 Identities=16% Similarity=0.155 Sum_probs=137.5
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++++|+++.|+..+..++++ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~i~g~ 83 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKH--VKAYIKPGQKVGICGRTGSGKSSLSLAFFRM------------VDIFDGKIVIDGI 83 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeE--EEEEEcCCCEEEEECCCCCCHHHHHHHHHcc------------cCCCCCeEEECCE
Confidence 3567788888886532346765 9999999999999999999999999999999 8999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH--------HH-----HHHHHHHH-----------HHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK--------VL-----VKELAQML-----------ERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~--------~~-----~~~l~~~~-----------~~~ls~g 233 (441)
.......... ...+.+.++...+|. .|+.+|+.... .. +.++.+.. ...||+|
T Consensus 84 ~i~~~~~~~~--~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G 160 (257)
T cd03288 84 DISKLPLHTL--RSRLSIILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG 160 (257)
T ss_pred EhhhCCHHHH--hhhEEEECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence 5432111111 122333333334554 36666654310 00 11111211 1368999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
++||+++ +|+|| ++++|+..++.+.++++++... +||+++|+ +.... .|+++.++ +.|.
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~-----~~~~~-~~dri~~l---~~G~ 231 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHR-----VSTIL-DADLVLVL---SRGI 231 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecC-----hHHHH-hCCEEEEE---ECCE
Confidence 9988765 99999 9999999999999999887544 88999999 55554 38999998 8888
Q ss_pred eeeCChHHHH-HHHHHHHHHHhcC
Q 013511 302 VVSRNSKVRQ-KARSYRIREYFYG 324 (441)
Q Consensus 302 vv~~~~~~~~-~~r~~~~~~yf~g 324 (441)
++..++.... ......++++|.+
T Consensus 232 i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 232 LVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred EEEeCCHHHHHhccchHHHHHHhc
Confidence 8877653321 1122345555543
No 257
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.85 E-value=1e-22 Score=195.59 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=131.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC----CCCcccC
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI----GQGAITI 174 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp----~~G~i~~ 174 (441)
++++.|+++.| +. .++++ +||++.+|++++|+|+||||||||+++|+|+ +.| ++|+|.+
T Consensus 4 ~l~~~~l~~~~-~~--~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~~~~~~~~G~i~~ 66 (254)
T PRK10418 4 QIELRNIALQA-AQ--PLVHG--VSLTLQRGRVLALVGGSGSGKSLTCAAALGI------------LPAGVRQTAGRVLL 66 (254)
T ss_pred EEEEeCeEEEe-cc--ceecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCcCCEEEE
Confidence 56778888888 32 36665 9999999999999999999999999999999 888 8999999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHHHH------------HHHHHHHhccC
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVKEL------------AQMLERQFNGN 233 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~~l------------~~~~~~~ls~g 233 (441)
+|..... ........++.++.+...|.+..++.+|+..... .+.++ .+.....||+|
T Consensus 67 ~g~~i~~--~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G 144 (254)
T PRK10418 67 DGKPVAP--CALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGG 144 (254)
T ss_pred CCeeccc--cccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHH
Confidence 9975421 1111111233334332234445566665543211 11111 12233569999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
++||+++ +|+|| +++||+..++.+.++++++.. .+||+++|+ +......||++.++ ++
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~-----~~~~~~~~d~v~~l---~~ 216 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD-----MGVVARLADDVAVM---SH 216 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC-----HHHHHHhCCEEEEE---EC
Confidence 9998775 99999 999999999999999988732 389999999 77776789999888 78
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|.++..++
T Consensus 217 G~i~~~~~ 224 (254)
T PRK10418 217 GRIVEQGD 224 (254)
T ss_pred CEEEEecC
Confidence 88887665
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.85 E-value=7.6e-23 Score=216.40 Aligned_cols=189 Identities=17% Similarity=0.180 Sum_probs=140.3
Q ss_pred CCCchhHHHHHHHHhhh---------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 96 ETPMVSYVNVNAVLEGR---------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~---------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
..+|++++|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ +
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~--isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl------------~- 336 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN--ISFTLRPGETLGLVGESGSGKSTTGLALLRL------------I- 336 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHhCc------------C-
Confidence 45689999999999521 1246765 9999999999999999999999999999998 6
Q ss_pred CCCCcccCCceeeeeeccCc---CCCCCCCCcccceEEEecccCccCCHHHHHH-------------HHHHH--------
Q 013511 167 IGQGAITIPGCIAATPIELP---IDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------LVKEL-------- 222 (441)
Q Consensus 167 p~~G~i~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------~~~~l-------- 222 (441)
|.+|+|+++|.......... .....++.++.+...+++.+|+.+|+.+... .+.++
T Consensus 337 ~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 337 NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416 (529)
T ss_pred CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH
Confidence 58999999997543211111 1112233334332246778899999876421 01111
Q ss_pred --HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhc
Q 013511 223 --AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLK 286 (441)
Q Consensus 223 --~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~ 286 (441)
.+.....||+||+||+.+ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +..+..
T Consensus 417 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd-----~~~~~~ 491 (529)
T PRK15134 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD-----LHVVRA 491 (529)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCC-----HHHHHH
Confidence 122234699999999876 99999 999999999999999998742 389999999 777777
Q ss_pred CCCCeEEEEecCCCCeeeCCh
Q 013511 287 NRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 287 ~~~~v~vl~l~~~g~vv~~~~ 307 (441)
.||++.++ ++|.+++.++
T Consensus 492 ~~d~i~~l---~~G~i~~~~~ 509 (529)
T PRK15134 492 LCHQVIVL---RQGEVVEQGD 509 (529)
T ss_pred hcCeEEEE---ECCEEEEEcC
Confidence 89999999 8898887664
No 259
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.85 E-value=1.2e-22 Score=194.92 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=134.4
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
+.+|+++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+++|+|+.. ++|.+|+|.++
T Consensus 4 ~~~~l~~~~l~~~~~~~--~~l~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~----------~~~~~G~i~~~ 69 (252)
T CHL00131 4 NKPILEIKNLHASVNEN--EILKG--LNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA----------YKILEGDILFK 69 (252)
T ss_pred CCceEEEEeEEEEeCCE--Eeeec--ceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc----------CcCCCceEEEC
Confidence 34578889999888754 46765 999999999999999999999999999999610 36899999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------------------HHHHHH----------HHHH
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------------------LVKELA----------QMLE 227 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------------~~~~l~----------~~~~ 227 (441)
|.......... ....++.+.++...+++.+++.+|+.+... .+.++. +...
T Consensus 70 g~~~~~~~~~~-~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 70 GESILDLEPEE-RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred CEEcccCChhh-hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 97542211111 111233333343455666677766544211 011111 1122
Q ss_pred H-HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcC-CCCeE
Q 013511 228 R-QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKN-RPNVD 292 (441)
Q Consensus 228 ~-~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~-~~~v~ 292 (441)
. .||+|++||+.+ +|+|| ++++|+.+++.+.++|+++.. .+||+++|+ +...... +|++.
T Consensus 149 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~-----~~~~~~~~~d~i~ 223 (252)
T CHL00131 149 NEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY-----QRLLDYIKPDYVH 223 (252)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHhhhCCEEE
Confidence 2 499999988765 99999 999999999999999988743 489999999 5555444 79988
Q ss_pred EEEecCCCCeeeCChHH
Q 013511 293 VVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~ 309 (441)
++ ++|.++..+...
T Consensus 224 ~l---~~G~i~~~~~~~ 237 (252)
T CHL00131 224 VM---QNGKIIKTGDAE 237 (252)
T ss_pred EE---eCCEEEEecChh
Confidence 88 788888776543
No 260
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.85 E-value=1.6e-23 Score=197.68 Aligned_cols=179 Identities=17% Similarity=0.214 Sum_probs=128.0
Q ss_pred CCchhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 97 TPMVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.+|+++.|+++.|++.. ..++++ +++++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~G~i~~~ 74 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQD--VSFTLHPGEVTALVGPSGSGKSTVVALLENF------------YQPQGGQVLLD 74 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCcEEEEC
Confidence 35778888888886531 246665 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------H-----HHHH-----------HHHHHHHh
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------L-----VKEL-----------AQMLERQF 230 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~-----~~~l-----------~~~~~~~l 230 (441)
|......... .....+.+.++...+|. .|+.+|+.+... . +..+ .+.....|
T Consensus 75 g~~~~~~~~~--~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 151 (226)
T cd03248 75 GKPISQYEHK--YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQL 151 (226)
T ss_pred CCchHHcCHH--HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcC
Confidence 9644221111 11122334444344554 488888764211 0 0111 11223458
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecC
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK 298 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~ 298 (441)
|+|++||+.+ +|+|| +++||+..++.+.++++++... +||+++|+ +.... .||++.++ +
T Consensus 152 SgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~-----~~~~~-~~d~i~~l---~ 222 (226)
T cd03248 152 SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHR-----LSTVE-RADQILVL---D 222 (226)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECC-----HHHHH-hCCEEEEe---c
Confidence 9999988765 99999 9999999999999999987544 89999999 55554 48998888 6
Q ss_pred CCC
Q 013511 299 SGG 301 (441)
Q Consensus 299 ~g~ 301 (441)
+|.
T Consensus 223 ~g~ 225 (226)
T cd03248 223 GGR 225 (226)
T ss_pred CCc
Confidence 654
No 261
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.85 E-value=7.8e-23 Score=218.43 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=138.5
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|++++|++....++++ +++++++|++++|+|+||||||||+++|+|+ .+|.+|+|.++|...
T Consensus 331 i~~~~v~f~y~~~~~~il~~--inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl------------~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 331 VEFRNVTFRYPGRDRPALDS--ISLVIEPGETVALVGRSGSGKSTLVNLIPRF------------YEPDSGQILLDGHDL 396 (571)
T ss_pred EEEEEEEEEcCCCCCccccC--eeEEecCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCeEEECCEeH
Confidence 66788888886533346765 9999999999999999999999999999999 999999999999765
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------HH---------HHHHHHH-----------HHHhccC
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------LV---------KELAQML-----------ERQFNGN 233 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------~~---------~~l~~~~-----------~~~ls~g 233 (441)
.......++ ..+.+.+|..++|. .|+++|+.++.. .+ .++.... ...||+|
T Consensus 397 ~~~~~~~~~--~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 397 ADYTLASLR--RQVALVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HhcCHHHHH--hhceEEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 332222222 33455555555654 599999876631 11 1111111 1248999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| ++++|....+.+.+.+++...+ ++|++||+ .. ..+.||++.++ ++|+
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~-----~~-~~~~~D~ii~l---~~g~ 544 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR-----LS-TIEKADRIVVM---DDGR 544 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehh-----hH-HHHhCCEEEEE---eCCE
Confidence 9999876 99999 9999999999999999988554 99999999 43 23568999888 8899
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.+....
T Consensus 545 i~~~g~~~~ 553 (571)
T TIGR02203 545 IVERGTHNE 553 (571)
T ss_pred EEeeCCHHH
Confidence 888776443
No 262
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=7.6e-23 Score=190.54 Aligned_cols=156 Identities=19% Similarity=0.259 Sum_probs=117.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ .+|.+|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~ 65 (207)
T PRK13539 2 MLEGEDLACVRGGR--VLFSG--LSFTLAAGEALVLTGPNGSGKTTLLRLIAGL------------LPPAAGTIKLDGGD 65 (207)
T ss_pred EEEEEeEEEEECCe--EEEec--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEe
Confidence 46677888888653 46665 9999999999999999999999999999999 89999999999964
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------HHH---------HHHHHHHHhccCccceeee--
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------VKE---------LAQMLERQFNGNAESRAAG-- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------~~~---------l~~~~~~~ls~g~~~r~~~-- 240 (441)
... . .....+.+..+...+++..|+.+|+.+.... +.+ +.+.....||+|++||+++
T Consensus 66 ~~~----~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 140 (207)
T PRK13539 66 IDD----P-DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALAR 140 (207)
T ss_pred Ccc----h-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHH
Confidence 311 1 0122334444444567778999998664321 111 1123335699999988765
Q ss_pred --------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCc
Q 013511 241 --------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 241 --------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~ 275 (441)
+|+|| ++++|+..++.+.+++++++ ..+||+++|+
T Consensus 141 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 141 LLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 99999 99999999999999998873 2389999999
No 263
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.85 E-value=1.2e-22 Score=221.86 Aligned_cols=184 Identities=18% Similarity=0.241 Sum_probs=137.0
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++|++++|++.. ..++++ +||++++|++++|+||||||||||+++|+|+ ++|.+|+|.++|.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~--isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~idg~ 543 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKG--LTFTLHPGEVVALVGPSGSGKSTVAALLQNL------------YQPTGGQVLLDGV 543 (711)
T ss_pred eEEEEEEEEECCCCCCCccccC--ceEEEcCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCEEEECCE
Confidence 467889999996532 356765 9999999999999999999999999999999 9999999999998
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHH-----------HHHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQML-----------ERQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~-----------~~~ls~ 232 (441)
++.......++. .+.+.+|..++|. .|++||+.++.. .+.+ +.+.. ...||+
T Consensus 544 ~i~~~~~~~lr~--~i~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 544 PLVQYDHHYLHR--QVALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred EHHhcCHHHHHh--hceEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 664332222222 3445555556665 699999987521 1111 11111 125999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
||+||+++ +|+|| |+++|....+.+.+ ....+..++|+++|+ +... +.+|++.++ ++|.
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHr-----l~~i-~~aD~IivL---~~G~ 690 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHR-----LSTV-ERADQILVL---KKGS 690 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEecc-----HHHH-HhCCEEEEE---ECCE
Confidence 99999876 99999 99999988888877 433444599999999 5543 568999999 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
+++.++..
T Consensus 691 ive~Gt~~ 698 (711)
T TIGR00958 691 VVEMGTHK 698 (711)
T ss_pred EEEeeCHH
Confidence 99988744
No 264
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.85 E-value=9.7e-23 Score=222.33 Aligned_cols=185 Identities=17% Similarity=0.232 Sum_probs=141.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++++|++....++++ +||++++|++++|+|+||||||||+|+|+|+ .+|.+|+|.++|.+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~--i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl------------~~p~~G~I~idg~~ 528 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDN--VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL------------YQPTEGSVLLDGVD 528 (694)
T ss_pred eEEEEEEEEEeCCCCccceee--eeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEE
Confidence 366788888886543356765 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g 233 (441)
........++ ..+.+.+|..++|. .|++||+.++.. .+ .+..+.. ...||+|
T Consensus 529 l~~~~~~~lr--~~i~~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgG 605 (694)
T TIGR03375 529 IRQIDPADLR--RNIGYVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGG 605 (694)
T ss_pred hhhCCHHHHH--hccEEECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHH
Confidence 6433222232 33455555556665 599999987531 11 1111111 1249999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| |+++|+...+.+.+.++++..+ ++|+++|+ +... +.+|++.++ ++|+
T Consensus 606 QrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHr-----l~~~-~~~D~iivl---~~G~ 676 (694)
T TIGR03375 606 QRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHR-----TSLL-DLVDRIIVM---DNGR 676 (694)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHH-HhCCEEEEE---eCCE
Confidence 9998776 99999 9999999999999999988554 99999999 5443 578999999 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
+++.++..
T Consensus 677 i~e~G~~~ 684 (694)
T TIGR03375 677 IVADGPKD 684 (694)
T ss_pred EEeeCCHH
Confidence 99888643
No 265
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.85 E-value=1.4e-22 Score=214.42 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=138.5
Q ss_pred CCchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----CC
Q 013511 97 TPMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-----GQ 169 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-----~~ 169 (441)
++|+++.|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ +.| ++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~--isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~------------~~~~~~~~~~ 68 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVND--VSLQIEAGETLALVGESGSGKSVTALSILRL------------LPSPPVVYPS 68 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeec--eEEEEeCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCcCCccc
Confidence 3578899999999631 1246765 9999999999999999999999999999999 776 69
Q ss_pred CcccCCceeeeeeccCc---CC-CCCCCCcccceEEEecccCccCCHHHHHH------------HHHHH-----------
Q 013511 170 GAITIPGCIAATPIELP---ID-PVEGIPLEMPLVYFFGHATPSNNVELYKV------------LVKEL----------- 222 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~tv~en~~~~~~------------~~~~l----------- 222 (441)
|+|.++|.......... .+ ...++.+|.+...+++.+++.+|+.+... .+.++
T Consensus 69 G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 148 (529)
T PRK15134 69 GDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK 148 (529)
T ss_pred eEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH
Confidence 99999997653211111 11 12344444432235566777777653211 01111
Q ss_pred -HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcC
Q 013511 223 -AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKN 287 (441)
Q Consensus 223 -~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~ 287 (441)
.++....||+||+||+.+ +|+|| +++||+..++.+.+++++++ ..+||+++|+ +..+...
T Consensus 149 ~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-----~~~~~~~ 223 (529)
T PRK15134 149 RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN-----LSIVRKL 223 (529)
T ss_pred HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc-----HHHHHHh
Confidence 133445799999999876 99999 99999999999999999874 2489999999 7777778
Q ss_pred CCCeEEEEecCCCCeeeCCh
Q 013511 288 RPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 288 ~~~v~vl~l~~~g~vv~~~~ 307 (441)
||++.++ ++|.++..+.
T Consensus 224 ~dri~~l---~~G~i~~~g~ 240 (529)
T PRK15134 224 ADRVAVM---QNGRCVEQNR 240 (529)
T ss_pred cCEEEEE---ECCEEEEeCC
Confidence 9999998 7888877654
No 266
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.85 E-value=9.3e-23 Score=182.79 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=107.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ ++|++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~vl~~--i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~v~~~g~~~~~ 66 (163)
T cd03216 3 LRGITKRFGGV--KALDG--VSLSVRRGEVHALLGENGAGKSTLMKILSGL------------YKPDSGEILVDGKEVSF 66 (163)
T ss_pred EEEEEEEECCe--EEEee--eEEEEeCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEECCc
Confidence 45666667554 35655 9999999999999999999999999999999 99999999999964321
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceee----------eEEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAA----------GMVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~----------~lIlDE-~~~lD 250 (441)
..... .....+.+. +. ||+||+||++ ++|+|| ++++|
T Consensus 67 ~~~~~-~~~~~i~~~-------~q------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD 114 (163)
T cd03216 67 ASPRD-ARRAGIAMV-------YQ------------------------LSVGERQMVEIARALARNARLLILDEPTAALT 114 (163)
T ss_pred CCHHH-HHhcCeEEE-------Ee------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence 10000 001112111 11 5555555544 599999 99999
Q ss_pred chhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 251 GVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
...++.+.+++++++. .+||+++|+ +......++++.++ ++|+++
T Consensus 115 ~~~~~~l~~~l~~~~~~~~tiii~sh~-----~~~~~~~~d~~~~l---~~g~i~ 161 (163)
T cd03216 115 PAEVERLFKVIRRLRAQGVAVIFISHR-----LDEVFEIADRVTVL---RDGRVV 161 (163)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 9999999999998853 389999999 66666678999888 777765
No 267
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.85 E-value=4.3e-22 Score=204.75 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=135.7
Q ss_pred eeeeCCCCchhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 91 DYTADETPMVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 91 ~y~~~~~~ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.|...+.+|+++.|+++.|++.. ..++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+
T Consensus 13 ~y~~~~~~mL~lknL~~~~~~~~~~~IL~n--VSfsI~~GEivgIiGpNGSGKSTLLkiLaGL------------l~P~s 78 (549)
T PRK13545 13 KYKMYNKPFDKLKDLFFRSKDGEYHYALNN--ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV------------TMPNK 78 (549)
T ss_pred eccccccceeEEEEEEEecCCCccceEEee--eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC------------CCCCc
Confidence 44455667888899988887632 246765 9999999999999999999999999999999 99999
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------HH---------HHHHHHHHHH
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----------LV---------KELAQMLERQ 229 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----------~~---------~~l~~~~~~~ 229 (441)
|+|.++|...... . ...+++.+|+.+|+.+... .+ ....+.....
T Consensus 79 GeI~I~G~~~~i~----------~-----~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~ 143 (549)
T PRK13545 79 GTVDIKGSAALIA----------I-----SSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKT 143 (549)
T ss_pred eEEEECCEeeeEE----------e-----ccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCccc
Confidence 9999999642100 0 0123445677777654221 01 1122333456
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
||+||+||+++ +|+|| +++||+..++.+.++|++++. .+||+++|+ +....+.||++.++
T Consensus 144 LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHd-----l~~i~~l~DrIivL-- 216 (549)
T PRK13545 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS-----LSQVKSFCTKALWL-- 216 (549)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHhCCEEEEE--
Confidence 99999998765 99999 999999999999999988753 389999999 77777789999888
Q ss_pred cCCCCeeeCCh
Q 013511 297 QKSGGVVSRNS 307 (441)
Q Consensus 297 ~~~g~vv~~~~ 307 (441)
..|.++..+.
T Consensus 217 -~~GkIv~~G~ 226 (549)
T PRK13545 217 -HYGQVKEYGD 226 (549)
T ss_pred -ECCEEEEECC
Confidence 7888876654
No 268
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.85 E-value=5.6e-23 Score=182.41 Aligned_cols=202 Identities=16% Similarity=0.191 Sum_probs=153.3
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc-
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG- 176 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G- 176 (441)
+.+++.|++.+|++. .|+++ +||++.+|+.-+|+|||||||||++..|+|. ..|++|++.+.|
T Consensus 4 ~iL~~~~vsVsF~GF--~Aln~--ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK------------trp~~G~v~f~g~ 67 (249)
T COG4674 4 IILYLDGVSVSFGGF--KALND--LSFSVDPGELRVLIGPNGAGKTTLMDVITGK------------TRPQEGEVLFDGD 67 (249)
T ss_pred ceEEEeceEEEEcce--eeeee--eEEEecCCeEEEEECCCCCCceeeeeeeccc------------CCCCcceEEEcCc
Confidence 456778899999998 46755 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------------HH---------HHHHHHHH
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------------VK---------ELAQMLER 228 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------------~~---------~l~~~~~~ 228 (441)
.++....... ..+.|++-.+|....|..+|++||+.+.... ++ +..+....
T Consensus 68 ~dl~~~~e~~-IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~ 146 (249)
T COG4674 68 TDLTKLPEHR-IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA 146 (249)
T ss_pred hhhccCCHHH-HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh
Confidence 4443322221 2344666556666789999999999875321 11 12345556
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.||.||+|+..+ +++|| .+++.....+..-++++.++.. .|+|+.|| |.-...++++|.|+
T Consensus 147 ~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHD-----M~Fvr~~A~~VTVl-- 219 (249)
T COG4674 147 LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHD-----MGFVREIADKVTVL-- 219 (249)
T ss_pred hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEecc-----HHHHHHhhheeEEE--
Confidence 799999977654 99999 7888877788888999999876 88899999 77777789999999
Q ss_pred cCCCCeeeCChHHHHHHHHHHHHHHhcCC
Q 013511 297 QKSGGVVSRNSKVRQKARSYRIREYFYGL 325 (441)
Q Consensus 297 ~~~g~vv~~~~~~~~~~r~~~~~~yf~g~ 325 (441)
..|.+...++-..- .++.++.+.|.|.
T Consensus 220 -h~G~VL~EGsld~v-~~dp~ViEvYLGr 246 (249)
T COG4674 220 -HEGSVLAEGSLDEV-QNDPKVIEVYLGR 246 (249)
T ss_pred -eccceeecccHHHh-hcCcceEeeeccc
Confidence 88988877763332 2344444545453
No 269
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.85 E-value=1.1e-22 Score=218.23 Aligned_cols=196 Identities=18% Similarity=0.239 Sum_probs=143.7
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+++.|++. ..++++ ++|++++|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|...
T Consensus 341 i~~~~v~f~y~~~-~~il~~--i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~idg~~i 405 (592)
T PRK10790 341 IDIDNVSFAYRDD-NLVLQN--INLSVPSRGFVALVGHTGSGKSTLASLLMGY------------YPLTEGEIRLDGRPL 405 (592)
T ss_pred EEEEEEEEEeCCC-Cceeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCceEEECCEEh
Confidence 5667888888643 246765 9999999999999999999999999999999 999999999999765
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHH---------HHHHH-----------HHHhccCcc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKE---------LAQML-----------ERQFNGNAE 235 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~---------l~~~~-----------~~~ls~g~~ 235 (441)
.....+.++ ..+.+.+|...+|.. |+++|+.++.. .+.+ +.+.. ...||+||+
T Consensus 406 ~~~~~~~l~--~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 406 SSLSHSVLR--QGVAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred hhCCHHHHH--hheEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 433222222 334555555567765 99999988631 1111 11111 124899999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+++ +|+|| ++.+|+...+.+.+.+++... .++|+++|+ +.. .+.+|++.++ ++|+++
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr-----~~~-l~~~D~ii~l---~~G~i~ 553 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHR-----LST-IVEADTILVL---HRGQAV 553 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecc-----hHH-HHhCCEEEEE---ECCEEE
Confidence 99875 99999 999999999999999988754 499999999 543 3468999888 899999
Q ss_pred eCChHHHHHHHHHHHHHHh
Q 013511 304 SRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 304 ~~~~~~~~~~r~~~~~~yf 322 (441)
+.++......+...+++.+
T Consensus 554 ~~G~~~~L~~~~~~y~~l~ 572 (592)
T PRK10790 554 EQGTHQQLLAAQGRYWQMY 572 (592)
T ss_pred EEcCHHHHHhCCCHHHHHH
Confidence 9887443322333444444
No 270
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=3.3e-21 Score=180.30 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=117.5
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc-CCceeeeeeccCcCCCCCCCCcccce
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT-IPGCIAATPIELPIDPVEGIPLEMPL 199 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~-~~G~~~~~~~~~~~~~~~~~~~~~~~ 199 (441)
++||++.+|++++|+||||||||||+|+|+|+ +.|++|+|. ++|... + +. ..
T Consensus 5 ~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl------------~~~~sG~i~~~~~~~~------~------~~---~~ 57 (213)
T PRK15177 5 KTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL------------DAPDEGDFIGLRGDAL------P------LG---AN 57 (213)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCCCEEEecCcee------c------cc---cc
Confidence 49999999999999999999999999999999 899999996 666321 0 11 12
Q ss_pred EEEecccCccCCHHHHHHHH-----------------HHHHHHHHHHhccCccceeee----------EEEeC-CCCCCc
Q 013511 200 VYFFGHATPSNNVELYKVLV-----------------KELAQMLERQFNGNAESRAAG----------MVINT-MGWIEG 251 (441)
Q Consensus 200 ~~~~g~~tv~en~~~~~~~~-----------------~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~ 251 (441)
..+++.+|+.+|+.+..... ....+.....+|+|++||+++ +|+|| ++.+|+
T Consensus 58 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 58 SFILPGLTGEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred cccCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 34678889999987753310 111233456799999998765 99999 799999
Q ss_pred hhHHHHHHHHH-HcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 252 VGYELLLHAID-TFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 252 ~~~~~l~~li~-~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
..++.+.+.+. ..+..++|+++|+ +......||++.++ ++|.++..++
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~-----~~~~~~~~d~i~~l---~~G~i~~~~~ 186 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHN-----PRLIKEHCHAFGVL---LHGKITMCED 186 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECC-----HHHHHHhcCeeEEE---ECCeEEEeCC
Confidence 99888888764 4444578899999 77776789999988 7898887765
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.85 E-value=5.8e-23 Score=187.12 Aligned_cols=162 Identities=20% Similarity=0.226 Sum_probs=116.1
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|++|+|.++|......
T Consensus 3 ~~l~~~~~~~--~~l~~--~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~------------~~~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 3 ENLSVGYGGR--TVLDD--LSLSIEAGEIVGILGPNGAGKSTLLKTLAGL------------LKPSSGEILLDGKDLASL 66 (180)
T ss_pred eEEEEEECCe--eeEee--eEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEECCcC
Confidence 4555566543 36655 9999999999999999999999999999999 999999999999643211
Q ss_pred ccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeee----------EEEeC-CCCCCc
Q 013511 183 IELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAG----------MVINT-MGWIEG 251 (441)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~ 251 (441)
... .....+.+.++ .+-...+....+.....||+|++||+++ +|+|| ++++|+
T Consensus 67 ~~~--~~~~~i~~~~q--------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~ 130 (180)
T cd03214 67 SPK--ELARKIAYVPQ--------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI 130 (180)
T ss_pred CHH--HHHHHHhHHHH--------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 000 00111222222 0000011223344456799999988765 99999 999999
Q ss_pred hhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 252 VGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 252 ~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
..++.+.+++++++. .++|+++|+ +....+.+|++.++ .+|.++.
T Consensus 131 ~~~~~~~~~l~~~~~~~~~tiii~sh~-----~~~~~~~~d~~~~l---~~g~i~~ 178 (180)
T cd03214 131 AHQIELLELLRRLARERGKTVVMVLHD-----LNLAARYADRVILL---KDGRIVA 178 (180)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEe
Confidence 999999999998753 389999999 66666678999888 6777653
No 272
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.8e-22 Score=188.34 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=129.3
Q ss_pred CchhHHHHHHHHhhhh-------hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 98 PMVSYVNVNAVLEGRR-------NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~-------~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
+++++.|+.+.|.... ..|+++ |||++.+|++++|+|.||||||||.|+|+++ .+|++|
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~--Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L------------~~pt~G 68 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDG--VSFSIKEGETLGLVGESGCGKSTLGRLILGL------------EEPTSG 68 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecc--eeEEEcCCCEEEEEecCCCCHHHHHHHHHcC------------cCCCCc
Confidence 3556666666664321 356655 9999999999999999999999999999999 999999
Q ss_pred cccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------HHHHHHHHHHHhccCccceeee----
Q 013511 171 AITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------VKELAQMLERQFNGNAESRAAG---- 240 (441)
Q Consensus 171 ~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------~~~l~~~~~~~ls~g~~~r~~~---- 240 (441)
+|.+.|..+.... ..+........ -.+.+.+++.++||||+||+.+
T Consensus 69 ~i~f~g~~i~~~~------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 69 EILFEGKDITKLS------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred eEEEcCcchhhcc------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 9999996532111 11111111222 2345678889999999999876
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
++.|| ++.+|...+..+.+++++++.. +.++++|| +..+...+|++.|| ..|.+++.++
T Consensus 125 al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHD-----L~vv~~isdri~VM---y~G~iVE~g~ 193 (268)
T COG4608 125 ALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHD-----LSVVRYISDRIAVM---YLGKIVEIGP 193 (268)
T ss_pred hhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEE-----HHhhhhhcccEEEE---ecCceeEecC
Confidence 99999 9999998899999999988753 88999999 88888899999999 8999999886
No 273
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.85 E-value=2.8e-22 Score=191.78 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=124.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~~~G 176 (441)
|++++|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|+ + .|.+|+|.++|
T Consensus 1 ~i~~~nl~~~~~~~--~~l~~--isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl------------~~~~~~~G~i~~~g 64 (248)
T PRK09580 1 MLSIKDLHVSVEDK--AILRG--LNLEVRPGEVHAIMGPNGSGKSTLSATLAGR------------EDYEVTGGTVEFKG 64 (248)
T ss_pred CeEEEEEEEEeCCe--eeeec--ceeEEcCCCEEEEECCCCCCHHHHHHHHcCC------------ccCCCCceEEEECC
Confidence 45667888888754 36665 9999999999999999999999999999998 6 48999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH------------------HHHHHHHHH----------HHH-
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY------------------KVLVKELAQ----------MLE- 227 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~------------------~~~~~~l~~----------~~~- 227 (441)
.......... .....+.+.++...+++..+...+.... ...+..+.+ ...
T Consensus 65 ~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (248)
T PRK09580 65 KDLLELSPED-RAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN 143 (248)
T ss_pred CccccCCHHH-HhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC
Confidence 6442111000 1112333333333344433322221110 000111111 011
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcC-CCCeEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKN-RPNVDV 293 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~-~~~v~v 293 (441)
..||+||+||+++ +|+|| +++||...++.+.+++++++. .+||+++|+ +...... +|++.+
T Consensus 144 ~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~-----~~~~~~~~~d~i~~ 218 (248)
T PRK09580 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHY-----QRILDYIKPDYVHV 218 (248)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHhhhCCEEEE
Confidence 1599999988765 99999 999999999999999988753 389999999 5555444 788888
Q ss_pred EEecCCCCeeeCCh
Q 013511 294 VKLQKSGGVVSRNS 307 (441)
Q Consensus 294 l~l~~~g~vv~~~~ 307 (441)
+ ++|.++..++
T Consensus 219 l---~~g~i~~~g~ 229 (248)
T PRK09580 219 L---YQGRIVKSGD 229 (248)
T ss_pred E---ECCeEEEeCC
Confidence 8 7888877665
No 274
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.84 E-value=1.4e-22 Score=217.18 Aligned_cols=197 Identities=21% Similarity=0.305 Sum_probs=142.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++.+ .++++ +++++++|++++|+|+||||||||+|+|+|+ .+|.+|+|.++|..
T Consensus 334 ~I~~~~vsf~y~~~~-~iL~~--inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl------------~~p~~G~I~i~g~~ 398 (588)
T PRK13657 334 AVEFDDVSFSYDNSR-QGVED--VSFEAKPGQTVAIVGPTGAGKSTLINLLQRV------------FDPQSGRILIDGTD 398 (588)
T ss_pred eEEEEEEEEEeCCCC-ceecc--eeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------cCCCCCEEEECCEE
Confidence 366778888886432 46765 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHH----HH-------HHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQM----LE-------RQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~----~~-------~~ls~g 233 (441)
........++. .+.+.++..++|. .|+++|+.++.. .+ .++.+. +. ..||+|
T Consensus 399 i~~~~~~~~r~--~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 399 IRTVTRASLRR--NIAVVFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred hhhCCHHHHHh--heEEEecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 64332222222 3444555556665 599999987521 11 111111 11 238999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| ++++|+...+.+.+.+++...+ ++|++||+ +.. .+.+|++.++ ++|+
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr-----~~~-~~~~D~ii~l---~~G~ 546 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHR-----LST-VRNADRILVF---DNGR 546 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEec-----HHH-HHhCCEEEEE---ECCE
Confidence 9999876 99999 9999999999999999887544 89999999 443 3568999888 8899
Q ss_pred eeeCChHHHHHHHHHHHHHHh
Q 013511 302 VVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf 322 (441)
+++.+.......+...+++++
T Consensus 547 i~~~g~~~~l~~~~~~y~~l~ 567 (588)
T PRK13657 547 VVESGSFDELVARGGRFAALL 567 (588)
T ss_pred EEEeCCHHHHHHCCChHHHHH
Confidence 998876433222233344444
No 275
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.84 E-value=2.1e-22 Score=219.64 Aligned_cols=198 Identities=16% Similarity=0.241 Sum_probs=145.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++....++++ +|+++++|++++|+|+||||||||+|+|+|+ .+|.+|+|.++|..
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~--i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~------------~~p~~G~I~idg~~ 520 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSN--LNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL------------YTPQHGQVLVDGVD 520 (694)
T ss_pred eEEEEEEEEEcCCCCcccccc--ceEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCceEEECCEe
Confidence 367788899996543346765 9999999999999999999999999999999 99999999999986
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g 233 (441)
........++ ..+.+.++..++|. .|++||+.++.. .+ .++.... ...||+|
T Consensus 521 i~~~~~~~~r--~~i~~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 521 LAIADPAWLR--RQMGVVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred hhhCCHHHHH--HhCeEEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 5433222222 23444555556665 599999987421 11 1111111 1348999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| |+++|+...+.+.+.+++...+ ++|+++|+ +... +.+|++.++ ++|+
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----~~~~-~~~d~ii~l---~~G~ 668 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHR-----LSTV-RACDRIIVL---EKGQ 668 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCC-----hHHH-HhCCEEEEE---eCCE
Confidence 9998765 99999 9999999999999999988554 99999999 5544 468999999 8999
Q ss_pred eeeCChHHHHHHHHHHHHHHh
Q 013511 302 VVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf 322 (441)
+++.++......+...+++++
T Consensus 669 i~~~g~~~~l~~~~~~y~~l~ 689 (694)
T TIGR01846 669 IAESGRHEELLALQGLYARLW 689 (694)
T ss_pred EEEeCCHHHHHHcCChHHHHH
Confidence 998887443322334455544
No 276
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.9e-22 Score=211.55 Aligned_cols=180 Identities=12% Similarity=0.163 Sum_probs=134.5
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|......
T Consensus 2 ~nl~~~~~~~--~il~~--vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~~~~~ 65 (491)
T PRK10982 2 SNISKSFPGV--KALDN--VNLKVRPHSIHALMGENGAGKSTLLKCLFGI------------YQKDSGSILFQGKEIDFK 65 (491)
T ss_pred CceEEEeCCE--Eeeee--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCceEEEECCEECCCC
Confidence 4666777653 46665 9999999999999999999999999999999 999999999999754211
Q ss_pred ccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------------HHHHH---------HHHHHHHhccCccceee
Q 013511 183 IELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------------LVKEL---------AQMLERQFNGNAESRAA 239 (441)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------------~~~~l---------~~~~~~~ls~g~~~r~~ 239 (441)
.... ..+..+.+.++...++..+|+.+|+.+... .+.++ .+.....||+||+||+.
T Consensus 66 ~~~~-~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 66 SSKE-ALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred CHHH-HHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence 0000 011234444444457778899988865311 01111 12344679999999887
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +......||++.++ ++|.++..+
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~-----~~~~~~~~d~i~~l---~~G~i~~~~ 216 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHK-----MEEIFQLCDEITIL---RDGQWIATQ 216 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEEEeec
Confidence 6 99999 999999999999999988743 389999999 77777789999999 888888765
Q ss_pred h
Q 013511 307 S 307 (441)
Q Consensus 307 ~ 307 (441)
+
T Consensus 217 ~ 217 (491)
T PRK10982 217 P 217 (491)
T ss_pred C
Confidence 4
No 277
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.1e-21 Score=172.52 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=144.0
Q ss_pred CCchhHHHHHHHHhhh-------hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 97 TPMVSYVNVNAVLEGR-------RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~-------~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
++.+++.|++|.|..+ ...+.+. +||++++|+.++|+|.||||||||.|+|+|. +.|++
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~--vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm------------i~PTs 67 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKP--VSFTLREGQTLAIIGENGSGKSTLAKMLAGM------------IEPTS 67 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccc--eEEEecCCcEEEEEccCCCcHhHHHHHHhcc------------cCCCC
Confidence 3568899999988543 2234444 9999999999999999999999999999999 99999
Q ss_pred CcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH----------------------HHHHHHHH
Q 013511 170 GAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV----------------------KELAQMLE 227 (441)
Q Consensus 170 G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~----------------------~~l~~~~~ 227 (441)
|+|.++|................+.||.|...|-+.+.+.+-++..++.. -+.++.+.
T Consensus 68 G~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~ 147 (267)
T COG4167 68 GEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147 (267)
T ss_pred ceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccch
Confidence 99999997653221111223345778888777766665554443332221 11234556
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC----CCEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK----ANVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~----~~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
..|+.+|+||+++ +|.|| .+.||...+..+.+++-+++ ...|.| +++ +.-....+|.|.
T Consensus 148 ~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV-~Qh-----lG~iKHi~D~vi 221 (267)
T COG4167 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV-TQH-----IGMIKHISDQVL 221 (267)
T ss_pred hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEE-ech-----hhHhhhhcccEE
Confidence 7799999999875 88999 99999887777777666554 334444 544 444444679999
Q ss_pred EEEecCCCCeeeCChHHH------HHHHHHHHHHHhcC
Q 013511 293 VVKLQKSGGVVSRNSKVR------QKARSYRIREYFYG 324 (441)
Q Consensus 293 vl~l~~~g~vv~~~~~~~------~~~r~~~~~~yf~g 324 (441)
|| ..|.+++++.... .......+++||-.
T Consensus 222 VM---~EG~vvE~G~t~~v~a~P~~~~TkRlieShFg~ 256 (267)
T COG4167 222 VM---HEGEVVERGSTADVLASPLHELTKRLIESHFGE 256 (267)
T ss_pred EE---ecCceeecCChhhhhcCCccHHHHHHHHHHhcc
Confidence 99 8999999986322 12344566777744
No 278
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.84 E-value=1.8e-22 Score=234.52 Aligned_cols=186 Identities=12% Similarity=0.193 Sum_probs=147.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+.++++|+++.|++....++++ +++++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~--lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL------------l~PtsG~I~i~G~ 992 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDR--LNITFYENQITAFLGHNGAGKTTTLSILTGL------------LPPTSGTVLVGGK 992 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEe--eEEEEcCCcEEEEECCCCChHHHHHHHHhcC------------CCCCceEEEECCE
Confidence 4788999999996322357766 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHH---------HHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l---------~~~~~~~ls~g~~~r 237 (441)
.+.... .. .+..+++.++...+++.+|+.||+.++.+. +.++ .+.....||+||+||
T Consensus 993 dI~~~~-~~--~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQR 1069 (2272)
T TIGR01257 993 DIETNL-DA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRK 1069 (2272)
T ss_pred ECcchH-HH--HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 653211 11 123345555555688899999999886432 1111 123345799999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+++ +|+|| ++++|+..++.+.++|++++.. +||++||+ ++.+..+||++.++ ++|.++..
T Consensus 1070 LsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHd-----mdea~~laDrI~iL---~~GkL~~~ 1141 (2272)
T TIGR01257 1070 LSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH-----MDEADLLGDRIAII---SQGRLYCS 1141 (2272)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECC-----HHHHHHhCCEEEEE---ECCEEEEe
Confidence 876 99999 9999999999999999998644 89999999 88887889999999 88988877
Q ss_pred ChH
Q 013511 306 NSK 308 (441)
Q Consensus 306 ~~~ 308 (441)
++.
T Consensus 1142 Gs~ 1144 (2272)
T TIGR01257 1142 GTP 1144 (2272)
T ss_pred cCH
Confidence 653
No 279
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.84 E-value=4.9e-22 Score=211.28 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=130.9
Q ss_pred CchhHHHHHHHHh-hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVLE-GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~~-~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+|+++.|+++.|+ +. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.+++
T Consensus 5 ~~l~i~~l~~~y~~~~--~il~~--vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~------------~~p~~G~i~~~~ 68 (556)
T PRK11819 5 YIYTMNRVSKVVPPKK--QILKD--ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFEGEARPAP 68 (556)
T ss_pred EEEEEeeEEEEeCCCC--eeeeC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecC
Confidence 5888999999997 43 46765 9999999999999999999999999999999 999999998764
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH-------H-----------------------------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV-------K----------------------------- 220 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~-------~----------------------------- 220 (441)
. ..+.+.++...+++.+|+.+|+.+..... .
T Consensus 69 ~-------------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (556)
T PRK11819 69 G-------------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA 135 (556)
T ss_pred C-------------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 1 11223333334677788999886532100 0
Q ss_pred --------H---H--------HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEE
Q 013511 221 --------E---L--------AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVL 270 (441)
Q Consensus 221 --------~---l--------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vi 270 (441)
+ + .+.....||+||+||+.+ +|+|| +++||+.+.+.+.++++++. .+||
T Consensus 136 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~tvi 214 (556)
T PRK11819 136 ADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-GTVV 214 (556)
T ss_pred cCccchHHHHHHHHHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-CeEE
Confidence 0 0 012235699999998776 99999 99999999999999999986 4899
Q ss_pred EeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 271 VLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 271 vi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
++||+ +......||++.++ +.|.++
T Consensus 215 iisHd-----~~~~~~~~d~i~~l---~~g~i~ 239 (556)
T PRK11819 215 AVTHD-----RYFLDNVAGWILEL---DRGRGI 239 (556)
T ss_pred EEeCC-----HHHHHhhcCeEEEE---eCCEEE
Confidence 99999 77776788999888 778765
No 280
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=7e-23 Score=189.73 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=118.6
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ .+|++|+|.++|..
T Consensus 1 ml~~~~l~~~~~~~--~il~~--~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~v~~~g~~ 64 (200)
T PRK13540 1 MLDVIELDFDYHDQ--PLLQQ--ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL------------LNPEKGEILFERQS 64 (200)
T ss_pred CEEEEEEEEEeCCe--eEEee--eeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeeEEECCCc
Confidence 45567788888654 36765 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH------HHHH---------HHHHHHHHhccCccceeee---
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV------LVKE---------LAQMLERQFNGNAESRAAG--- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~------~~~~---------l~~~~~~~ls~g~~~r~~~--- 240 (441)
.... .......+.+.++...+++..|+.+|+.+... .+.+ +.+.....||+|++||+++
T Consensus 65 ~~~~---~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~lara 141 (200)
T PRK13540 65 IKKD---LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRL 141 (200)
T ss_pred cccC---HHHHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHH
Confidence 4211 01112234444444456678899999876421 1111 1223335699999988765
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCc
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~ 275 (441)
+|+|| ++++|+..++.+.+++++++ ..+||+++|+
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 186 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 99999 99999999999999999874 2489999998
No 281
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.84 E-value=1.5e-22 Score=190.73 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=124.2
Q ss_pred chhHHHHHHHHhhh-----hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 99 MVSYVNVNAVLEGR-----RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~~-----~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
|++++|+++.|+.. ...++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~------------~~~~~G~i~ 66 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKN--VSLTVNAGECVALSGPSGAGKSTLLKSLYAN------------YLPDSGRIL 66 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEec--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEE
Confidence 45677888888531 1246765 9999999999999999999999999999999 999999999
Q ss_pred CC--ce--eeeeeccCcC--CCCCCCCcccceEEEecccCccCCHHHHHHH-----------HHHHH----------HHH
Q 013511 174 IP--GC--IAATPIELPI--DPVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKELA----------QML 226 (441)
Q Consensus 174 ~~--G~--~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~l~----------~~~ 226 (441)
++ |. .......... .....+.+.++...+++.+|+.+|+.+.... +.++. +..
T Consensus 67 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 146 (224)
T TIGR02324 67 VRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLP 146 (224)
T ss_pred EecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCC
Confidence 97 42 1111000000 0112344444445678888998887653210 11111 122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
...||+|++||+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +......||++..
T Consensus 147 ~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~-----~~~~~~~~d~i~~ 221 (224)
T TIGR02324 147 PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD-----EEVRELVADRVMD 221 (224)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhcceeEe
Confidence 34589999988765 99999 999999999999999998753 389999999 5555556787654
Q ss_pred E
Q 013511 294 V 294 (441)
Q Consensus 294 l 294 (441)
+
T Consensus 222 ~ 222 (224)
T TIGR02324 222 V 222 (224)
T ss_pred c
Confidence 4
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.84 E-value=2.4e-22 Score=211.33 Aligned_cols=183 Identities=18% Similarity=0.200 Sum_probs=136.4
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC--CCCcccCCce
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI--GQGAITIPGC 177 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp--~~G~i~~~G~ 177 (441)
+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.| ++|+|.++|.
T Consensus 2 l~i~~l~~~~~~~--~il~~--isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~------------~~~~~~~G~i~~~g~ 65 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDG--IDLEVRPGECVGLCGENGAGKSTLMKILSGV------------YPHGTWDGEIYWSGS 65 (500)
T ss_pred EEEEeEEEEeCCe--Eeecc--eEEEEeCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCeEEEECCE
Confidence 4567888888654 36665 9999999999999999999999999999998 776 7999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------HHHHHH----------HHHHHHhcc
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------------LVKELA----------QMLERQFNG 232 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------------~~~~l~----------~~~~~~ls~ 232 (441)
......... .....+.+.++...+++.+|+.+|+.+... .+.++. +.....||+
T Consensus 66 ~~~~~~~~~-~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 144 (500)
T TIGR02633 66 PLKASNIRD-TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGG 144 (500)
T ss_pred ECCCCCHHH-HHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCH
Confidence 542211000 011234444444467788899988865321 011111 123457999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
||+||+.+ +|+|| +++||+..++.+.++|++++. .+||+++|+ +......||++.++ ++
T Consensus 145 G~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd-----~~~~~~~~d~i~~l---~~ 216 (500)
T TIGR02633 145 GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHK-----LNEVKAVCDTICVI---RD 216 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc-----HHHHHHhCCEEEEE---eC
Confidence 99998876 99999 999999999999999988743 389999999 77777789999998 78
Q ss_pred CCeeeCCh
Q 013511 300 GGVVSRNS 307 (441)
Q Consensus 300 g~vv~~~~ 307 (441)
|.++..+.
T Consensus 217 G~i~~~~~ 224 (500)
T TIGR02633 217 GQHVATKD 224 (500)
T ss_pred CeEeeecC
Confidence 88876554
No 283
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.7e-22 Score=209.28 Aligned_cols=189 Identities=15% Similarity=0.109 Sum_probs=137.1
Q ss_pred CCchhHHHHHHHHhh-hhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc-CCCCcccC
Q 013511 97 TPMVSYVNVNAVLEG-RRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD-IGQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~-~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld-p~~G~i~~ 174 (441)
.+|++++|+++.|+. ....++++ +||++.+|++++|+||||||||||+|+|+|+ +. |++|+|.+
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl------------~~~~~~G~i~~ 322 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDD--VSFSLRRGEILGIAGLVGAGRTELVQCLFGA------------YPGRWEGEIFI 322 (506)
T ss_pred CceEEEecCccccccccccccccc--eeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC------------CCCCCCcEEEE
Confidence 458999999999942 11246765 9999999999999999999999999999999 88 59999999
Q ss_pred Cceeeeeecc-CcCCCCCCCCcccce-EEEecccCccCCHHHHHH----------------HHHHH----------HHHH
Q 013511 175 PGCIAATPIE-LPIDPVEGIPLEMPL-VYFFGHATPSNNVELYKV----------------LVKEL----------AQML 226 (441)
Q Consensus 175 ~G~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~tv~en~~~~~~----------------~~~~l----------~~~~ 226 (441)
+|........ .......++.++.+. ..+++.+|+.+|+.+... .+.++ .+..
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 402 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA 402 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc
Confidence 9965421100 001112233333321 235677888888864310 01111 1223
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
...||+||+||+.+ +|+|| +++||+..++.+.+++++++. .+||++||+ +....+.||++.+
T Consensus 403 ~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd-----~~~~~~~~d~v~~ 477 (506)
T PRK13549 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSE-----LPEVLGLSDRVLV 477 (506)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCC-----HHHHHHhCCEEEE
Confidence 35699999999876 99999 999999999999999988753 389999999 8777788999988
Q ss_pred EEecCCCCeeeCCh
Q 013511 294 VKLQKSGGVVSRNS 307 (441)
Q Consensus 294 l~l~~~g~vv~~~~ 307 (441)
+ ++|.++..++
T Consensus 478 l---~~G~i~~~~~ 488 (506)
T PRK13549 478 M---HEGKLKGDLI 488 (506)
T ss_pred E---ECCEEEEEec
Confidence 8 7888875443
No 284
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.84 E-value=3.9e-22 Score=185.27 Aligned_cols=158 Identities=18% Similarity=0.265 Sum_probs=111.5
Q ss_pred hHHHHHHHHhhhh---hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 101 SYVNVNAVLEGRR---NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 101 ~~~nl~~~~~~~~---~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
++.|+++.|++.+ ..++++ +||++.+|++++|+||||||||||+++|+|+ .+|.+|+|.++|.
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~--~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~------------~~~~~G~i~~~g~ 67 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKD--INLEVPKGELVAIVGPVGSGKSSLLSALLGE------------LEKLSGSVSVPGS 67 (204)
T ss_pred EEeEEEEecCCCCccccceeee--eeEEECCCCEEEEECCCCCCHHHHHHHHhCc------------CCCCCCeEEEcCE
Confidence 3567777786542 246765 9999999999999999999999999999999 9999999999983
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHH------HHHH--------------HHHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKE------LAQM--------------LERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~------l~~~--------------~~~~ls~g 233 (441)
+. +.++.+ .++ ..|+.+|+.+... .... +.+. ....||+|
T Consensus 68 i~-------------~~~q~~--~l~-~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G 131 (204)
T cd03250 68 IA-------------YVSQEP--WIQ-NGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGG 131 (204)
T ss_pred EE-------------EEecCc--hhc-cCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHH
Confidence 22 111221 233 3456565544210 0100 0111 12458999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHH-HHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLH-AIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~-li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
++||+++ +|+|| ++++|+...+.+.+ +++.... .+||+++|+ +..... ++++.++
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~-----~~~~~~-~d~i~~l 200 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ-----LQLLPH-ADQIVVL 200 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC-----HHHHhh-CCEEEEE
Confidence 9988765 99999 99999999888877 5665532 489999999 655555 8988877
No 285
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=2.6e-22 Score=214.14 Aligned_cols=198 Identities=16% Similarity=0.241 Sum_probs=141.2
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|++++|+.....++++ +|+++++|++++|+||||||||||+++|+|+ ++|.+|+|.++|...
T Consensus 314 I~~~~v~~~y~~~~~~~l~~--i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~------------~~p~~G~i~~~g~~~ 379 (569)
T PRK10789 314 LDVNIRQFTYPQTDHPALEN--VNFTLKPGQMLGICGPTGSGKSTLLSLIQRH------------FDVSEGDIRFHDIPL 379 (569)
T ss_pred EEEEEEEEECCCCCCccccC--eeEEECCCCEEEEECCCCCCHHHHHHHHhcc------------cCCCCCEEEECCEEH
Confidence 55677777776432346765 9999999999999999999999999999999 999999999999755
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHHH---------HHHHH-----------HHHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVKE---------LAQML-----------ERQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~~---------l~~~~-----------~~~ls~g~ 234 (441)
.......++ ..+.+.++..++|. .|+++|+.++.. .+.. ..... ...||+||
T Consensus 380 ~~~~~~~~~--~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq 456 (569)
T PRK10789 380 TKLQLDSWR--SRLAVVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQ 456 (569)
T ss_pred hhCCHHHHH--hheEEEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHH
Confidence 332211222 23444444456665 499999987521 1111 01111 12489999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| ++++|+...+.+.+.++++..+ ++|+++|+ +... +.+|++.++ ++|++
T Consensus 457 ~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~-----~~~~-~~~d~i~~l---~~G~i 527 (569)
T PRK10789 457 KQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHR-----LSAL-TEASEILVM---QHGHI 527 (569)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc-----hhHH-HcCCEEEEE---eCCEE
Confidence 998775 99999 9999999999999999887544 99999999 5433 468999888 88999
Q ss_pred eeCChHHHHHHHHHHHHHHhc
Q 013511 303 VSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 303 v~~~~~~~~~~r~~~~~~yf~ 323 (441)
++.++......+...+++++.
T Consensus 528 ~~~g~~~~l~~~~~~y~~l~~ 548 (569)
T PRK10789 528 AQRGNHDQLAQQSGWYRDMYR 548 (569)
T ss_pred EEecCHHHHHHcCChHHHHHH
Confidence 988874432223334555443
No 286
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.84 E-value=2e-22 Score=186.37 Aligned_cols=155 Identities=18% Similarity=0.242 Sum_probs=115.7
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.....
T Consensus 3 ~~~l~~~~~~~--~~l~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 3 ARNLACSRGER--MLFEG--LSFTLNAGEALQVTGPNGIGKTTLLRILAGL------------LRPDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEECCE--EEEee--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEEccc
Confidence 34556666554 35655 9999999999999999999999999999999 99999999999975432
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------HHH---------HHHHHHHHhccCccceeee-----
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------VKE---------LAQMLERQFNGNAESRAAG----- 240 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------~~~---------l~~~~~~~ls~g~~~r~~~----- 240 (441)
. .. .....+.+.++...+++..|+.+|+.++... +.. ..+.....||+|++||+++
T Consensus 67 ~-~~--~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 143 (198)
T TIGR01189 67 Q-RD--EPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWL 143 (198)
T ss_pred c-hH--HhhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHh
Confidence 1 11 1122344444545667778999998765321 111 1223345699999988775
Q ss_pred -----EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCc
Q 013511 241 -----MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 241 -----lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~ 275 (441)
+|+|| ++++|...++.+.++++++. ..+||+++|+
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~ 186 (198)
T TIGR01189 144 SRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ 186 (198)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 99999 99999999999999998873 2388999998
No 287
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.84 E-value=7.2e-22 Score=208.13 Aligned_cols=183 Identities=13% Similarity=0.140 Sum_probs=135.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|++++|+++.|+ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl------------~~p~~G~I~~~g 324 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRD--ISFSVCRGEILGFAGLVGSGRTELMNCLFGV------------DKRAGGEIRLNG 324 (510)
T ss_pred CcEEEEeCccccCC----Ccccc--eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CcCCCCeEEECC
Confidence 45899999998753 25655 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccce---EEEecccCccCCHHHHHH--------------------HHHHH----------H
Q 013511 177 CIAATPIELPIDPVEGIPLEMPL---VYFFGHATPSNNVELYKV--------------------LVKEL----------A 223 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~tv~en~~~~~~--------------------~~~~l----------~ 223 (441)
...... ......+..+.+.++. ..+++.+|+.+|+.+... .+.++ .
T Consensus 325 ~~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 403 (510)
T PRK09700 325 KDISPR-SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV 403 (510)
T ss_pred EECCCC-CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc
Confidence 643211 0000011223333332 346777888888764210 01111 1
Q ss_pred HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 224 QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 224 ~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
+.....||+||+||+.+ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +......||+
T Consensus 404 ~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd-----~~~~~~~~d~ 478 (510)
T PRK09700 404 NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE-----LPEIITVCDR 478 (510)
T ss_pred cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHhhCCE
Confidence 22335699999998876 99999 999999999999999988743 389999999 7777788999
Q ss_pred eEEEEecCCCCeeeCC
Q 013511 291 VDVVKLQKSGGVVSRN 306 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~ 306 (441)
+.++ ++|.++...
T Consensus 479 i~~l---~~G~i~~~~ 491 (510)
T PRK09700 479 IAVF---CEGRLTQIL 491 (510)
T ss_pred EEEE---ECCEEEEEe
Confidence 9888 788877543
No 288
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.84 E-value=2.6e-22 Score=211.94 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=139.7
Q ss_pred CCchhHHHHHHHHhh---hhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 97 TPMVSYVNVNAVLEG---RRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~---~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
.+|+++.|+++.|++ ....++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl------------~~p~~G~i~ 342 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDN--VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV------------LEPTSGEVN 342 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEee--EEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEE
Confidence 468999999999953 11246765 9999999999999999999999999999999 899999999
Q ss_pred CC-cee---eeeeccCc-CCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHH--------------HHH
Q 013511 174 IP-GCI---AATPIELP-IDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKE--------------LAQ 224 (441)
Q Consensus 174 ~~-G~~---~~~~~~~~-~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~--------------l~~ 224 (441)
++ |.. ........ ...+..+.+.++...+++.+|+.+|+.+... .+.+ +.+
T Consensus 343 ~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 422 (520)
T TIGR03269 343 VRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILD 422 (520)
T ss_pred EecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhh
Confidence 95 531 11100000 0011224444444457788999999875311 0111 123
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
.....||+||+||+.+ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +..+.+.||+
T Consensus 423 ~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd-----~~~~~~~~d~ 497 (520)
T TIGR03269 423 KYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD-----MDFVLDVCDR 497 (520)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC-----HHHHHHhCCE
Confidence 4456799999998876 99999 999999999999999988742 389999999 7777778999
Q ss_pred eEEEEecCCCCeeeCCh
Q 013511 291 VDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~~ 307 (441)
+.++ ++|.++..++
T Consensus 498 i~~l---~~G~i~~~g~ 511 (520)
T TIGR03269 498 AALM---RDGKIVKIGD 511 (520)
T ss_pred EEEE---ECCEEEEECC
Confidence 9988 7888877654
No 289
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=7.6e-22 Score=216.00 Aligned_cols=185 Identities=22% Similarity=0.290 Sum_probs=148.2
Q ss_pred hhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 100 VSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 100 l~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++|++|+|..++ ..++++ +++++++|+.++||||+||||||..-+|-.+ .||.+|.|.++|.+
T Consensus 988 I~~~~V~F~YPsRP~~~Il~~--l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf------------Ydp~~G~V~IDg~d 1053 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDVPVLNN--LSLSIRAGQTVALVGPSGSGKSTVISLLERF------------YDPDAGKVKIDGVD 1053 (1228)
T ss_pred EEEeeeEeeCCCCCCchhhcC--CcEEecCCCEEEEECCCCCCHHHHHHHHHHh------------cCCCCCeEEECCcc
Confidence 67899999998754 346665 9999999999999999999999999999999 99999999999988
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--HHH------HH----------HH-------HHHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--VKE------LA----------QM-------LERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--~~~------l~----------~~-------~~~~ls~g 233 (441)
+....-+.++.+.+++-|.| .+|. .|++||+.++... ..+ ++ +. ...+||||
T Consensus 1054 ik~lnl~~LR~~i~lVsQEP--~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGG 1130 (1228)
T KOG0055|consen 1054 IKDLNLKWLRKQIGLVSQEP--VLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGG 1130 (1228)
T ss_pred cccCCHHHHHHhcceeccCc--hhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCch
Confidence 76554444555555555555 4555 6999999998211 111 11 11 11359999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ |+||| |+.||-++.+.+.+++++.... |.|++.|. |... +.||.+.|+ ++|.
T Consensus 1131 QKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHR-----LSTI-qnaD~I~Vi---~~G~ 1201 (1228)
T KOG0055|consen 1131 QKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHR-----LSTI-QNADVIAVL---KNGK 1201 (1228)
T ss_pred HHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecc-----hhhh-hcCCEEEEE---ECCE
Confidence 9999886 99999 9999999999999999999876 88888998 6655 589999999 9999
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.++...
T Consensus 1202 VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1202 VVEQGTHDE 1210 (1228)
T ss_pred EEecccHHH
Confidence 999997543
No 290
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.84 E-value=8.4e-22 Score=191.17 Aligned_cols=182 Identities=16% Similarity=0.177 Sum_probs=122.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++.|+++.|++.+ .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..
T Consensus 6 ~l~~~~l~~~~~~~~-~il~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~ 70 (272)
T PRK15056 6 GIVVNDVTVTWRNGH-TALRD--ASFTVPGGSIAALVGVNGSGKSTLFKALMGF------------VRLASGKISILGQP 70 (272)
T ss_pred eEEEEeEEEEecCCc-EEEEe--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEECCEE
Confidence 456778888885322 36665 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH---------------HHHHH---------HHHHHHHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY---------------KVLVK---------ELAQMLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~---------------~~~~~---------~l~~~~~~~ls~g~ 234 (441)
.... ......++.++.+...+....++.+|+.+. ..... ...+.....||+|+
T Consensus 71 i~~~---~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~ 147 (272)
T PRK15056 71 TRQA---LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQ 147 (272)
T ss_pred hHHh---hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHH
Confidence 3210 000011222222211111112333332210 00111 11223345699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ +......|+++.++ +|+
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~-----~~~~~~~~d~v~~~----~G~ 218 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN-----LGSVTEFCDYTVMV----KGT 218 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE----CCE
Confidence 988765 99999 999999999999999998853 389999999 77666778987433 577
Q ss_pred eeeCCh
Q 013511 302 VVSRNS 307 (441)
Q Consensus 302 vv~~~~ 307 (441)
++..+.
T Consensus 219 i~~~g~ 224 (272)
T PRK15056 219 VLASGP 224 (272)
T ss_pred EEeecC
Confidence 776654
No 291
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.84 E-value=6.6e-22 Score=189.33 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=125.8
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++. .++++ +||++.+|++++|+||||||||||+++|+|+ ++ .+|+|.++|.....
T Consensus 3 ~~~l~~~------~~l~~--vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl------------~~-~~G~i~~~g~~i~~ 61 (248)
T PRK03695 3 LNDVAVS------TRLGP--LSAEVRAGEILHLVGPNGAGKSTLLARMAGL------------LP-GSGSIQFAGQPLEA 61 (248)
T ss_pred ccccchh------ceecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CC-CCeEEEECCEecCc
Confidence 4566664 14554 9999999999999999999999999999998 65 48999999975422
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----------HHHHH---------HHHHHHHhccCcccee----
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------LVKEL---------AQMLERQFNGNAESRA---- 238 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------~~~~l---------~~~~~~~ls~g~~~r~---- 238 (441)
....... ..+.+.++...++...|+.+|+.++.. .+.++ .+.....||+|++||+
T Consensus 62 ~~~~~~~--~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~ 139 (248)
T PRK03695 62 WSAAELA--RHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAA 139 (248)
T ss_pred CCHHHHh--hheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHH
Confidence 1111111 123333333345566788888776411 11111 1223345899988653
Q ss_pred -------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 239 -------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 239 -------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
.++|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.||++.++ +.|.+
T Consensus 140 al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~-----~~~~~~~~d~i~~l---~~G~i 211 (248)
T PRK03695 140 VVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD-----LNHTLRHADRVWLL---KQGKL 211 (248)
T ss_pred HHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHHHHhCCEEEEE---ECCEE
Confidence 4799999 999999999999999998853 399999999 77777789999999 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
+..+.
T Consensus 212 ~~~g~ 216 (248)
T PRK03695 212 LASGR 216 (248)
T ss_pred EEECC
Confidence 87665
No 292
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.83 E-value=4.7e-22 Score=210.00 Aligned_cols=183 Identities=13% Similarity=0.116 Sum_probs=130.4
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec--cCCCCcccCCc--
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL--DIGQGAITIPG-- 176 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl--dp~~G~i~~~G-- 176 (441)
++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ + .|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl------------~~~~p~~G~i~~~~~~ 65 (520)
T TIGR03269 2 EVKNLTKKFDGK--EVLKN--ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM------------DQYEPTSGRIIYHVAL 65 (520)
T ss_pred EEEEEEEEECCe--Eeeec--eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc------------ccCCCCceEEEEeccc
Confidence 346777777653 46665 9999999999999999999999999999998 6 58999998862
Q ss_pred ---------------------eeeee----ecc--C-c-CCCCCCCCcccce-EEEecccCccCCHHHHHHH--------
Q 013511 177 ---------------------CIAAT----PIE--L-P-IDPVEGIPLEMPL-VYFFGHATPSNNVELYKVL-------- 218 (441)
Q Consensus 177 ---------------------~~~~~----~~~--~-~-~~~~~~~~~~~~~-~~~~g~~tv~en~~~~~~~-------- 218 (441)
..... ... . . ...+..+.+.++. ..+++.+|+.+|+.+....
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~ 145 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEA 145 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHH
Confidence 11000 000 0 0 0011223333332 3567778999998764221
Q ss_pred ---HHH---------HHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEe
Q 013511 219 ---VKE---------LAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVL 272 (441)
Q Consensus 219 ---~~~---------l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi 272 (441)
+.+ +.+.....||+||+||+.+ +|+|| +++||+..++.+.++++++.. .+||++
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 111 1233345799999999876 99999 999999999999999988732 389999
Q ss_pred CCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 273 GQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 273 ~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+ +....+.||++.++ ++|.++..+.
T Consensus 226 tHd-----~~~~~~~~d~i~~l---~~G~i~~~g~ 252 (520)
T TIGR03269 226 SHW-----PEVIEDLSDKAIWL---ENGEIKEEGT 252 (520)
T ss_pred eCC-----HHHHHHhcCEEEEE---eCCEEeeecC
Confidence 999 77776789999888 7888876543
No 293
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.83 E-value=6.8e-22 Score=211.39 Aligned_cols=198 Identities=20% Similarity=0.257 Sum_probs=142.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|+++.|++.+ .++++ +++++++|++++|+||||||||||+++|+|+ .+|.+|+|.++|..
T Consensus 334 ~i~~~~v~~~y~~~~-~~l~~--i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 334 AVEFRHITFEFANSS-QGVFD--VSFEAKAGQTVAIVGPTGAGKTTLINLLQRV------------YDPTVGQILIDGID 398 (585)
T ss_pred eEEEEEEEEECCCCC-ccccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHccC------------CCCCCCEEEECCEE
Confidence 466788888886532 35655 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHH---------HHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVK---------ELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~---------~l~~~~-----------~~~ls~g 233 (441)
........++ ..+.+.++..++|. .|+++|+.++.. .+. +..... ...||+|
T Consensus 399 ~~~~~~~~~~--~~i~~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 399 INTVTRESLR--KSIATVFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred hhhCCHHHHH--hheEEEccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 5332211222 23444455455665 699999987521 111 111111 1248999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| ++++|....+.+.+.++++..+ ++|+++|+ +... ..+|++.++ ++|+
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~-----~~~~-~~~d~i~~l---~~G~ 546 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHR-----LSTV-RNADLVLFL---DQGR 546 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcC-----hHHH-HcCCEEEEE---ECCE
Confidence 9998776 99999 9999999999999999887554 99999999 5444 458999888 8899
Q ss_pred eeeCChHHHHHHHHHHHHHHhc
Q 013511 302 VVSRNSKVRQKARSYRIREYFY 323 (441)
Q Consensus 302 vv~~~~~~~~~~r~~~~~~yf~ 323 (441)
+++.++......+...+++.+.
T Consensus 547 i~~~g~~~~l~~~~~~y~~l~~ 568 (585)
T TIGR01192 547 LIEKGSFQELIQKDGRFYKLLR 568 (585)
T ss_pred EEEECCHHHHHHCCChHHHHHH
Confidence 9888764432223334555443
No 294
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.3e-21 Score=193.85 Aligned_cols=189 Identities=20% Similarity=0.317 Sum_probs=144.9
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-+++.|+++.|+..+ .++++ +||++.+|+.++++||+|+||||++|+|..+ .|..+|.|.++|++
T Consensus 537 ~i~fsnvtF~Y~p~k-~vl~d--isF~v~pGktvAlVG~SGaGKSTimRlLfRf------------fdv~sGsI~iDgqd 601 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGK-PVLSD--ISFTVQPGKTVALVGPSGAGKSTIMRLLFRF------------FDVNSGSITIDGQD 601 (790)
T ss_pred eEEEEEeEEecCCCC-ceeec--ceEEecCCcEEEEECCCCCchhHHHHHHHHH------------hhccCceEEEcCch
Confidence 367889999998865 56765 9999999999999999999999999999999 99999999999998
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH----------HH-HHHHH-------HHH-------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK----------VL-VKELA-------QML-------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~----------~~-~~~l~-------~~~-------~~~ls~g 233 (441)
+.......++...|++ +++.-+|.+ |+..|+.+.. .. ..++. +.+ .-+||||
T Consensus 602 Irnvt~~SLRs~IGVV--PQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGG 678 (790)
T KOG0056|consen 602 IRNVTQSSLRSSIGVV--PQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGG 678 (790)
T ss_pred HHHHHHHHHHHhcCcc--cCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCc
Confidence 7554444555555554 445556664 6777776642 10 11111 111 2359999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
++||+++ +++|| ++.||-...+.+...+.++..+ +-|++.|. |.... .+|-+.++ ++|.
T Consensus 679 EKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHR-----LSTiv-nAD~ILvi---~~G~ 749 (790)
T KOG0056|consen 679 EKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHR-----LSTIV-NADLILVI---SNGR 749 (790)
T ss_pred chhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeee-----ehhee-cccEEEEE---eCCe
Confidence 9999876 89999 9999998888999999998765 66666788 66553 67888888 9999
Q ss_pred eeeCChHHHHHHH
Q 013511 302 VVSRNSKVRQKAR 314 (441)
Q Consensus 302 vv~~~~~~~~~~r 314 (441)
++++++.+....|
T Consensus 750 IvErG~HeeLl~r 762 (790)
T KOG0056|consen 750 IVERGRHEELLKR 762 (790)
T ss_pred EeecCcHHHHHhc
Confidence 9999986654444
No 295
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.5e-21 Score=204.97 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=125.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|..
T Consensus 1 ml~i~~ls~~~~~~--~il~~--vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl------------~~p~~G~i~~~~~~ 64 (530)
T PRK15064 1 MLSTANITMQFGAK--PLFEN--ISVKFGGGNRYGLIGANGCGKSTFMKILGGD------------LEPSAGNVSLDPNE 64 (530)
T ss_pred CEEEEEEEEEeCCc--EeEeC--CEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecCCC
Confidence 45677888888764 46665 9999999999999999999999999999999 89999999987731
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----------------------------------------
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----------------------------------------- 217 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----------------------------------------- 217 (441)
..++. ++...++...|+.+|+.+...
T Consensus 65 -----------~i~~~--~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (530)
T PRK15064 65 -----------RLGKL--RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTA 131 (530)
T ss_pred -----------EEEEE--eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhH
Confidence 01122 222234555666666543210
Q ss_pred --HHHHH----------HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCC
Q 013511 218 --LVKEL----------AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQ 274 (441)
Q Consensus 218 --~~~~l----------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h 274 (441)
.+.++ .+.....||+||+||+.+ +|+|| +++||+.+++.+.+++++. ..+||+++|
T Consensus 132 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-~~tiiivsH 210 (530)
T PRK15064 132 EARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER-NSTMIIISH 210 (530)
T ss_pred HHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 01111 112346799999998775 99999 9999999999999999864 348999999
Q ss_pred chhhHHHHHHhcCCCCeEEEEecCCCCee-eCC
Q 013511 275 EKLFSMLRDVLKNRPNVDVVKLQKSGGVV-SRN 306 (441)
Q Consensus 275 ~~l~~~l~~~~~~~~~v~vl~l~~~g~vv-~~~ 306 (441)
+ +....+.||++.++ ++|.++ ..+
T Consensus 211 d-----~~~~~~~~d~i~~l---~~g~i~~~~g 235 (530)
T PRK15064 211 D-----RHFLNSVCTHMADL---DYGELRVYPG 235 (530)
T ss_pred C-----HHHHHhhcceEEEE---eCCEEEEecC
Confidence 9 77666789999988 788874 444
No 296
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=2.1e-21 Score=206.29 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=129.5
Q ss_pred CchhHHHHHHHHh-hhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 98 PMVSYVNVNAVLE-GRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 98 ~ml~~~nl~~~~~-~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.|+++.|+++.|+ ++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~~~--~il~~--is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~------------~~p~~G~i~~~~ 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKK--EILKD--ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV------------DKEFNGEARPAP 66 (552)
T ss_pred EEEEEeeEEEecCCCC--eeecC--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecC
Confidence 3678899999997 43 46765 9999999999999999999999999999999 899999998765
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH------------------H------------------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV------------------K------------------ 220 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~------------------~------------------ 220 (441)
. ..+.+.++...++.++|+.+|+.+..... .
T Consensus 67 ~-------------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (552)
T TIGR03719 67 G-------------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDA 133 (552)
T ss_pred C-------------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence 1 11233333334667788888887532100 0
Q ss_pred --------H---H--------HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEE
Q 013511 221 --------E---L--------AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVL 270 (441)
Q Consensus 221 --------~---l--------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vi 270 (441)
+ + .+.....||+||+||+.+ +|+|| +++||+..++.+.++|++++ .+||
T Consensus 134 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~-~tvI 212 (552)
T TIGR03719 134 ADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP-GTVV 212 (552)
T ss_pred cCcchhHHHHHHHHhhCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC-CeEE
Confidence 0 0 012335699999998775 99999 99999999999999999986 4899
Q ss_pred EeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 271 VLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 271 vi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++|+ +......||++.++ ++|.++
T Consensus 213 iisHd-----~~~~~~~~d~v~~l---~~g~i~ 237 (552)
T TIGR03719 213 AVTHD-----RYFLDNVAGWILEL---DRGRGI 237 (552)
T ss_pred EEeCC-----HHHHHhhcCeEEEE---ECCEEE
Confidence 99999 76666778999888 777765
No 297
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.83 E-value=9.6e-21 Score=182.69 Aligned_cols=156 Identities=19% Similarity=0.224 Sum_probs=116.3
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|.......
T Consensus 38 ~il~~--is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl------------~~p~~G~I~~~g~~~~~~~----------- 92 (264)
T PRK13546 38 FALDD--ISLKAYEGDVIGLVGINGSGKSTLSNIIGGS------------LSPTVGKVDRNGEVSVIAI----------- 92 (264)
T ss_pred EEEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCceEEEECCEEeEEec-----------
Confidence 45655 9999999999999999999999999999999 9999999999995321100
Q ss_pred cccceEEEecccCccCCHHHHHHH-----------HH---------HHHHHHHHHhccCccceeee----------EEEe
Q 013511 195 LEMPLVYFFGHATPSNNVELYKVL-----------VK---------ELAQMLERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 195 ~~~~~~~~~g~~tv~en~~~~~~~-----------~~---------~l~~~~~~~ls~g~~~r~~~----------lIlD 244 (441)
. ..+++.+|+.+|+.+.... +. .+.+.....||+||+||+++ +|+|
T Consensus 93 --~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD 168 (264)
T PRK13546 93 --S--AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID 168 (264)
T ss_pred --c--cCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 0 1123345666665432110 01 11122335699999988765 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 245 T-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
| ++++|+..++.+.+++.++.. .+||+++|+ +......|+++.++ ++|.++..++
T Consensus 169 EPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~-----~~~i~~~~d~i~~l---~~G~i~~~g~ 226 (264)
T PRK13546 169 EALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN-----LGQVRQFCTKIAWI---EGGKLKDYGE 226 (264)
T ss_pred CccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHHHcCEEEEE---ECCEEEEeCC
Confidence 9 899999999999999988742 389999999 66666678999888 8888887765
No 298
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=4.8e-22 Score=211.08 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=137.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++....++++ +|+++++|++++|+||||||||||+++|+|+ ++|.+|+|.++|..
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~--~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~ 381 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRG--ISFRLQAGEALAIIGPSGSGKSTLARLIVGI------------WPPTSGSVRLDGAD 381 (544)
T ss_pred eEEEEEEEEEcCCCCcccccc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEe
Confidence 466778888886433346765 9999999999999999999999999999999 99999999999975
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH---------HHHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV---------KELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~---------~~l~~~~-----------~~~ls~g 233 (441)
........+ +..+.+.++..++|.. |+++|+.++.. .+ .++.+.+ ...||+|
T Consensus 382 i~~~~~~~~--~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgG 458 (544)
T TIGR01842 382 LKQWDRETF--GKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGG 458 (544)
T ss_pred hhhCCHHHH--hhheEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHH
Confidence 533221122 2334455555566654 89999875421 11 1111111 1348999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
|+||+++ +|+|| ++++|+...+.+.+.++++. ..++|+++|+ +.. .+.+|++.++ ++|
T Consensus 459 q~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~-----~~~-~~~~d~i~~l---~~G 529 (544)
T TIGR01842 459 QRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR-----PSL-LGCVDKILVL---QDG 529 (544)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC-----HHH-HHhCCEEEEE---ECC
Confidence 9998776 99999 99999999999999998874 3499999999 543 3568999888 889
Q ss_pred CeeeCChH
Q 013511 301 GVVSRNSK 308 (441)
Q Consensus 301 ~vv~~~~~ 308 (441)
++++.++.
T Consensus 530 ~i~~~g~~ 537 (544)
T TIGR01842 530 RIARFGER 537 (544)
T ss_pred EEEeeCCH
Confidence 99888763
No 299
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.83 E-value=6.5e-22 Score=211.55 Aligned_cols=184 Identities=21% Similarity=0.320 Sum_probs=135.2
Q ss_pred hhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 100 VSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 100 l~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++|++++|+... ..++++ ++|++++|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 338 i~~~~v~f~y~~~~~~~iL~~--inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl------------~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 338 IEFEQVNFAYPARPDQPALDG--LNLTVRPGETVALVGPSGAGKSTLFQLLLRF------------YDPQSGRILLDGVD 403 (576)
T ss_pred EEEEEEEEECCCCCCCccccc--eeEEecCCCEEEEECCCCCCHHHHHHHHHhc------------cCCCCCEEEECCEE
Confidence 56778888886422 246665 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHH---------HHHHHH-----------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVK---------ELAQML-----------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~---------~l~~~~-----------~~~ls~g 233 (441)
+.......++ ..+.+.++..++| +.|++||+.++.. .+. ++.+.. ...||+|
T Consensus 404 i~~~~~~~~~--~~i~~~~Q~~~lf-~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgG 480 (576)
T TIGR02204 404 LRQLDPAELR--ARMALVPQDPVLF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGG 480 (576)
T ss_pred HHhcCHHHHH--HhceEEccCCccc-cccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHH
Confidence 5332222222 2344444544555 4589999887421 111 111111 1248999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
|+||+++ +|+|| ++++|+...+.+.+.++.... .++|+++|+ +... +.+|++.++ ++|.
T Consensus 481 q~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~-----~~~~-~~~d~vi~l---~~g~ 551 (576)
T TIGR02204 481 QRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHR-----LATV-LKADRIVVM---DQGR 551 (576)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecc-----hHHH-HhCCEEEEE---ECCE
Confidence 9998765 99999 999999999999999988754 499999999 4333 468999888 8899
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
+++.++..
T Consensus 552 ~~~~g~~~ 559 (576)
T TIGR02204 552 IVAQGTHA 559 (576)
T ss_pred EEeeecHH
Confidence 99887643
No 300
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=6.9e-22 Score=209.16 Aligned_cols=173 Identities=15% Similarity=0.178 Sum_probs=131.4
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 318 ~~l~~~~l~~~~~~~--~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~------------~~p~~G~i~~~~~ 381 (530)
T PRK15064 318 NALEVENLTKGFDNG--PLFKN--LNLLLEAGERLAIIGENGVGKTTLLRTLVGE------------LEPDSGTVKWSEN 381 (530)
T ss_pred ceEEEEeeEEeeCCc--eeecC--cEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCc
Confidence 589999999999764 36665 9999999999999999999999999999999 8999999998873
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHH----------HHHHHHHHHhccCccceeee-
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVK----------ELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~----------~l~~~~~~~ls~g~~~r~~~- 240 (441)
.. .++.++.+...+++.+|+.+|+.++. ..+. ...+.....||+||+||+.+
T Consensus 382 ~~-----------i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 382 AN-----------IGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred eE-----------EEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 11 12222222112344566666654321 0111 12234456799999998775
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee-eCC
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV-SRN 306 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv-~~~ 306 (441)
+|+|| +++||+..++.+.+++++++ .+||++||+ +......|+++.++ ++|+++ ..+
T Consensus 451 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~tvi~vsHd-----~~~~~~~~d~i~~l---~~g~i~~~~g 518 (530)
T PRK15064 451 KLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYE-GTLIFVSHD-----REFVSSLATRIIEI---TPDGVVDFSG 518 (530)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCC-CEEEEEeCC-----HHHHHHhCCEEEEE---ECCeEEEcCC
Confidence 99999 99999999999999999985 489999999 77776789999888 788876 444
No 301
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.83 E-value=5.7e-21 Score=182.46 Aligned_cols=141 Identities=14% Similarity=0.161 Sum_probs=106.0
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEE
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYF 202 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (441)
++++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..+ .+.++...+
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~------------~~p~~G~i~~~g~~i--------------~~~~q~~~~ 72 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGV------------LKPDEGDIEIELDTV--------------SYKPQYIKA 72 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCCeEEECCceE--------------EEecccccC
Confidence 455678999999999999999999999999 999999999988422 111221222
Q ss_pred ecccCccCCHHHHHH-----------HH-----HHHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHH
Q 013511 203 FGHATPSNNVELYKV-----------LV-----KELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYE 255 (441)
Q Consensus 203 ~g~~tv~en~~~~~~-----------~~-----~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~ 255 (441)
+...|+.+|+.++.. .+ ..+.+.....||+|++||+++ +|+|| +++||+..++
T Consensus 73 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~ 152 (246)
T cd03237 73 DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRL 152 (246)
T ss_pred CCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 344567666643211 01 112234456799999998875 99999 9999999999
Q ss_pred HHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 256 LLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 256 ~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.+.++|+++. ..+||+++|+ +......||++.++
T Consensus 153 ~l~~~l~~~~~~~~~tiiivsHd-----~~~~~~~~d~i~~l 189 (246)
T cd03237 153 MASKVIRRFAENNEKTAFVVEHD-----IIMIDYLADRLIVF 189 (246)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 9999999874 3489999999 77666789998887
No 302
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.83 E-value=3.9e-22 Score=211.17 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=122.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++++|++.+ .++++ +||++++|++++|+||+|||||||+++|+|+ .+|++|+|.++|.+
T Consensus 334 ~I~~~~vsf~Y~~~~-~vL~~--isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~------------~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 334 TLELRDLSFGYPGSP-PVLDG--VSLDLPPGERVAILGPSGSGKSTLLMLLTGL------------LDPLQGEVTLDGVS 398 (529)
T ss_pred eEEEEEEEEecCCCC-ceeec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEE
Confidence 367889999997543 46766 9999999999999999999999999999999 99999999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HH-------------HHHHHHH-------HHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LV-------------KELAQML-------ERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~-------------~~l~~~~-------~~~ls~g 233 (441)
+... ...++.. +.+.+|..++|. -|++||+.++.. .+ .++.+.+ ...||||
T Consensus 399 i~~~-~~~lr~~--i~~V~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 399 VSSL-QDELRRR--ISVFAQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred hhhH-HHHHHhh--eEEEccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 7554 4334333 444455555555 599999988521 11 1111111 1349999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCc
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQE 275 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~ 275 (441)
|+||+++ +|+|| |+.+|....+.+.+.+++...+ |+|+++|+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 9999876 99999 9999999999999999887554 99999996
No 303
>PLN03130 ABC transporter C family member; Provisional
Probab=99.83 E-value=8.8e-22 Score=229.48 Aligned_cols=185 Identities=17% Similarity=0.214 Sum_probs=142.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|.+....++++ +||++++|++++|+|++|||||||+++|.++ ++|.+|+|.++|.+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~--is~~I~~GekVaIVGrSGSGKSTLl~lL~rl------------~~p~~G~I~IDG~d 1302 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHG--LSFEISPSEKVGIVGRTGAGKSSMLNALFRI------------VELERGRILIDGCD 1302 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCc------------CCCCCceEEECCEe
Confidence 467788888886543357876 9999999999999999999999999999999 99999999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHH---------HHHHHH-----------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVK---------ELAQML-----------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~---------~l~~~~-----------~~~ls~g~ 234 (441)
+.....+.++...++. +|...+|. -|+++|+..+.. .+. +..... ...||+||
T Consensus 1303 I~~i~l~~LR~~IsiV--pQdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQ 1379 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGII--PQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQ 1379 (1622)
T ss_pred cccCCHHHHHhccEEE--CCCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHH
Confidence 7544333444444444 44445665 499999976521 111 111111 12599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+.+|....+.+.+.|++... .|+|+++|. +.... .+|+|.|+ ++|++
T Consensus 1380 rQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHR-----L~tI~-~~DrIlVL---d~G~I 1450 (1622)
T PLN03130 1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR-----LNTII-DCDRILVL---DAGRV 1450 (1622)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCC-----hHHHH-hCCEEEEE---ECCEE
Confidence 998765 99999 999999999999999987654 499999999 76654 58999999 89999
Q ss_pred eeCChHH
Q 013511 303 VSRNSKV 309 (441)
Q Consensus 303 v~~~~~~ 309 (441)
++.+++.
T Consensus 1451 vE~Gt~~ 1457 (1622)
T PLN03130 1451 VEFDTPE 1457 (1622)
T ss_pred EEeCCHH
Confidence 9988644
No 304
>PLN03232 ABC transporter C family member; Provisional
Probab=99.83 E-value=6.9e-22 Score=229.93 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=142.0
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|+.....++++ +||++++|++++|+|++|||||||+++|.++ ++|.+|+|.++|.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~--isl~I~~GekvaIVG~SGSGKSTL~~lL~rl------------~~p~~G~I~IdG~d 1299 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHG--LSFFVSPSEKVGVVGRTGAGKSSMLNALFRI------------VELEKGRIMIDDCD 1299 (1495)
T ss_pred cEEEEEEEEEECCCCCccccc--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CcCCCceEEECCEE
Confidence 367888999995443357866 9999999999999999999999999999999 99999999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHH---------HHHHHH-----------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVK---------ELAQML-----------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~---------~l~~~~-----------~~~ls~g~ 234 (441)
+.......++.. +.+.+|..++|.. |+++|+.++.. .+. ++.+.. ...||+||
T Consensus 1300 i~~i~~~~lR~~--i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1376 (1495)
T PLN03232 1300 VAKFGLTDLRRV--LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQ 1376 (1495)
T ss_pred hhhCCHHHHHhh--cEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHH
Confidence 654333333333 4444445566664 99999976421 111 111111 12599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+.+|....+.+.+.|++... .|+|+++|. +... ..+|+|.++ ++|++
T Consensus 1377 rQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHR-----l~ti-~~~DrIlVL---~~G~i 1447 (1495)
T PLN03232 1377 RQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHR-----LNTI-IDCDKILVL---SSGQV 1447 (1495)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC-----HHHH-HhCCEEEEE---ECCEE
Confidence 998765 99999 999999999999999988744 499999999 6555 458999999 89999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
++.++...
T Consensus 1448 vE~Gt~~e 1455 (1495)
T PLN03232 1448 LEYDSPQE 1455 (1495)
T ss_pred EEECCHHH
Confidence 99887543
No 305
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.1e-20 Score=174.40 Aligned_cols=175 Identities=15% Similarity=0.195 Sum_probs=129.9
Q ss_pred chhHHHHHHHH-hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVL-EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~-~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+..+.++.+.+ ......+|++ +||++.+|++++|+|+||||||||+|+|+|. +.|++|++.+.|.
T Consensus 24 ~~~~~~~~~~~~~~~~~~aL~d--isf~i~~Ge~vGiiG~NGaGKSTLlkliaGi------------~~Pt~G~v~v~G~ 89 (249)
T COG1134 24 KKRLKGLAKGGRKVAEFWALKD--ISFEIYKGERVGIIGHNGAGKSTLLKLIAGI------------YKPTSGKVKVTGK 89 (249)
T ss_pred HHHHHHHhcCCCCcceEEEecC--ceEEEeCCCEEEEECCCCCcHHHHHHHHhCc------------cCCCCceEEEcce
Confidence 44455554333 2233467876 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH--------------------HHHHHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV--------------------KELAQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~--------------------~~l~~~~~~~ls~g~~~r 237 (441)
++. .+. .+.+ |-+.+|.+||+.+....+ .++.+...+.+|.|++.|
T Consensus 90 v~~-----li~--lg~G-------f~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aR 155 (249)
T COG1134 90 VAP-----LIE--LGAG-------FDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYAR 155 (249)
T ss_pred Eeh-----hhh--cccC-------CCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHH
Confidence 642 111 2333 445678899998765432 112233345678888766
Q ss_pred ee----------eEEEeC-CCCCCchhHHHHHHHHHHc-CC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AA----------GMVINT-MGWIEGVGYELLLHAIDTF-KA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~----------~lIlDE-~~~lD~~~~~~l~~li~~~-~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
.+ +||+|| .+.-|..-++.-.+.++++ +. .+||+++|+ +..+.+.||++..+ +.|.+..
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd-----~~~I~~~Cd~~i~l---~~G~i~~ 227 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD-----LGAIKQYCDRAIWL---EHGQIRM 227 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECC-----HHHHHHhcCeeEEE---eCCEEEE
Confidence 54 499999 8888887666666666666 33 489999999 88888899999999 9999988
Q ss_pred CChHH
Q 013511 305 RNSKV 309 (441)
Q Consensus 305 ~~~~~ 309 (441)
.++..
T Consensus 228 ~G~~~ 232 (249)
T COG1134 228 EGSPE 232 (249)
T ss_pred cCCHH
Confidence 87643
No 306
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.6e-21 Score=174.25 Aligned_cols=201 Identities=17% Similarity=0.263 Sum_probs=138.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.|+++.|+|...+++ ..++++ +++++++||+.+|+||||||||||.++|+|. | +..+++|+|.++|.
T Consensus 2 ~~L~I~dLhv~v~~~-keILkg--vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~-------p---~Y~Vt~G~I~~~Ge 68 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKG--VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-------P---KYEVTEGEILFDGE 68 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcC--cceeEcCCcEEEEECCCCCCHHHHHHHHhCC-------C---CceEecceEEECCc
Confidence 578888998888874 246765 9999999999999999999999999999997 1 14678999999999
Q ss_pred eeeeeccCcCCCCCCC--CcccceEEEecccCccCCHHHHHHH--------------HHHHH-----------HHHHHHh
Q 013511 178 IAATPIELPIDPVEGI--PLEMPLVYFFGHATPSNNVELYKVL--------------VKELA-----------QMLERQF 230 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~-----------~~~~~~l 230 (441)
++....... +.+.|+ .||.| .=++..+..+.+...... +++.+ ..+...+
T Consensus 69 dI~~l~~~E-RAr~GifLafQ~P--~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GF 145 (251)
T COG0396 69 DILELSPDE-RARAGIFLAFQYP--VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGF 145 (251)
T ss_pred ccccCCHhH-HHhcCCEEeecCC--ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCc
Confidence 875433221 223343 44544 334445544433322111 11111 1112238
Q ss_pred ccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCc-hhhHHHHHHhcCCCCeEEEEe
Q 013511 231 NGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQE-KLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 231 s~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~-~l~~~l~~~~~~~~~v~vl~l 296 (441)
|||++.|..+ .|+|| .++||..+.+.+.+.+++++.. .++++||. +++..+ ..|+|.|+
T Consensus 146 SGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i-----~pD~vhvl-- 218 (251)
T COG0396 146 SGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI-----KPDKVHVL-- 218 (251)
T ss_pred CcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc-----CCCEEEEE--
Confidence 9999877544 99999 9999999999999999999754 78888887 332222 35889999
Q ss_pred cCCCCeeeCChHHH-HHHHHHHHHHHh
Q 013511 297 QKSGGVVSRNSKVR-QKARSYRIREYF 322 (441)
Q Consensus 297 ~~~g~vv~~~~~~~-~~~r~~~~~~yf 322 (441)
.+|+++..+.... .......+..++
T Consensus 219 -~~GrIv~sG~~el~~~le~~gy~~~~ 244 (251)
T COG0396 219 -YDGRIVKSGDPELAEELEEKGYDWLK 244 (251)
T ss_pred -ECCEEEecCCHHHHHHHHHhchHHhh
Confidence 8999998876533 344445555444
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=6.2e-21 Score=172.67 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=99.5
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
|.|+++.|++. .++++ ++++++|++++|+||||||||||+|+|+|+ +.|++|+|.++|....
T Consensus 3 ~~~l~~~~~~~--~~l~~---~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g~~i~- 64 (177)
T cd03222 3 YPDCVKRYGVF--FLLVE---LGVVKEGEVIGIVGPNGTGKTTAVKILAGQ------------LIPNGDNDEWDGITPV- 64 (177)
T ss_pred CCCeEEEECCE--EEEcc---CcEECCCCEEEEECCCCChHHHHHHHHHcC------------CCCCCcEEEECCEEEE-
Confidence 35777778765 34543 378999999999999999999999999999 9999999999985321
Q ss_pred eccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceee----------eEEEeC-CCCCC
Q 013511 182 PIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAA----------GMVINT-MGWIE 250 (441)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~----------~lIlDE-~~~lD 250 (441)
+.++... ||+||+||++ ++++|| ++++|
T Consensus 65 -------------~~~q~~~----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 65 -------------YKPQYID----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred -------------EEcccCC----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 1111000 5666655544 499999 99999
Q ss_pred chhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 251 GVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 251 ~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+..++.+.+.++++.. .+|++++|+ +....+.|+++.++
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~-----~~~~~~~~d~i~~l 145 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHD-----LAVLDYLSDRIHVF 145 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECC-----HHHHHHhCCEEEEE
Confidence 9999999999988742 489999999 76666678998777
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.82 E-value=2.7e-21 Score=203.31 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=134.2
Q ss_pred CCchhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-CCCcccC
Q 013511 97 TPMVSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-GQGAITI 174 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-~~G~i~~ 174 (441)
.+|+++.|+++.|+.. ...++++ +||++.+|++++|+||||||||||+|+|+|+ +.| .+|+|.+
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~--is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~------------~~p~~~G~i~~ 320 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDD--VSFSLRRGEILGVAGLVGAGRTELVQALFGA------------YPGKFEGNVFI 320 (500)
T ss_pred CceEEEeCCccccccccccccccc--ceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC------------CCCCCCeEEEE
Confidence 3478999999988321 1246765 9999999999999999999999999999999 885 7999999
Q ss_pred Cceeeeeecc-CcCCCCCCCCcccce-EEEecccCccCCHHHHHH----------------HHHHHH----------HHH
Q 013511 175 PGCIAATPIE-LPIDPVEGIPLEMPL-VYFFGHATPSNNVELYKV----------------LVKELA----------QML 226 (441)
Q Consensus 175 ~G~~~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~tv~en~~~~~~----------------~~~~l~----------~~~ 226 (441)
+|........ .......++.++.+. ..+++.+|+.+|+.+... .+.++. +..
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 400 (500)
T TIGR02633 321 NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP 400 (500)
T ss_pred CCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc
Confidence 9975421100 011122233333321 136777888887755210 011111 122
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
...||+||+||+.+ +|+|| +++||+..++.+.+++++++. .+||+++|+ +....+.||++.+
T Consensus 401 ~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd-----~~~~~~~~d~v~~ 475 (500)
T TIGR02633 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSE-----LAEVLGLSDRVLV 475 (500)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEE
Confidence 34699999998776 99999 999999999999999988753 389999999 8777788999998
Q ss_pred EEecCCCCeee
Q 013511 294 VKLQKSGGVVS 304 (441)
Q Consensus 294 l~l~~~g~vv~ 304 (441)
+ ++|.++.
T Consensus 476 l---~~G~i~~ 483 (500)
T TIGR02633 476 I---GEGKLKG 483 (500)
T ss_pred E---ECCEEEE
Confidence 8 7787764
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.82 E-value=3.5e-21 Score=180.68 Aligned_cols=171 Identities=11% Similarity=0.121 Sum_probs=120.0
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT 181 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~ 181 (441)
+.|+++.|++.+ .++++ +||++.+|++++|+||||||||||+++|+|+ ++|++|+|.++|.....
T Consensus 3 ~~~~~~~~~~~~-~il~~--vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~ 67 (218)
T cd03290 3 VTNGYFSWGSGL-ATLSN--INIRIPTGQLTMIVGQVGCGKSSLLLAILGE------------MQTLEGKVHWSNKNESE 67 (218)
T ss_pred eeeeEEecCCCC-cceee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc------------CCCCCCeEEECCccccc
Confidence 356677776442 46665 9999999999999999999999999999999 89999999999975422
Q ss_pred eccC--cCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHHHHH--------------------HHHHHhccCcc
Q 013511 182 PIEL--PIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKELAQ--------------------MLERQFNGNAE 235 (441)
Q Consensus 182 ~~~~--~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~l~~--------------------~~~~~ls~g~~ 235 (441)
.... ....+..+.+.++...++ ..|+.+|+.+... ......+ .....||+|++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 146 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQR 146 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHH
Confidence 1100 001123344444444555 5689898876321 1111111 11246899999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHH--HHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLH--AIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~--li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
||+++ +|+|| ++++|+..++.+.+ +++.++. .++|+++|+ +... ..+|++.++
T Consensus 147 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~-----~~~~-~~~d~i~~l 214 (218)
T cd03290 147 QRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHK-----LQYL-PHADWIIAM 214 (218)
T ss_pred HHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCC-----hHHH-hhCCEEEEe
Confidence 88775 99999 99999999888877 6666643 389999999 5544 358888777
No 310
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.82 E-value=2.6e-21 Score=177.77 Aligned_cols=144 Identities=20% Similarity=0.256 Sum_probs=105.6
Q ss_pred hccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcC-CCCCCCC
Q 013511 116 AKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-DPVEGIP 194 (441)
Q Consensus 116 ~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~-~~~~~~~ 194 (441)
++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|+|.++|..... ..... .....+.
T Consensus 7 il~~--vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~------------~~~~~G~i~~~g~~~~~-~~~~~~~~~~~i~ 71 (190)
T TIGR01166 7 VLKG--LNFAAERGEVLALLGANGAGKSTLLLHLNGL------------LRPQSGAVLIDGEPLDY-SRKGLLERRQRVG 71 (190)
T ss_pred eecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceeEEECCEEccc-cccchHHHHhhEE
Confidence 5654 9999999999999999999999999999999 99999999999975421 11111 1122333
Q ss_pred cccceE--EEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccCccceeee----------EE
Q 013511 195 LEMPLV--YFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGNAESRAAG----------MV 242 (441)
Q Consensus 195 ~~~~~~--~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g~~~r~~~----------lI 242 (441)
+.++.. .++ ..|+.+|+.+.... +.. ..+.....||+|++||+++ +|
T Consensus 72 ~~~q~~~~~~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 72 LVFQDPDDQLF-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred EEecChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 333332 234 46899998764210 111 1233445699999998775 99
Q ss_pred EeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCc
Q 013511 243 INT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQE 275 (441)
Q Consensus 243 lDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~ 275 (441)
+|| ++++|+..++.+.+++++++. .+||+++|+
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 999 999999999999999998753 389999998
No 311
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.82 E-value=1.6e-21 Score=227.19 Aligned_cols=186 Identities=18% Similarity=0.138 Sum_probs=142.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++++|......++++ +||++++|++++|||++|||||||+++|.++ ++|.+|+|.++|.+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~--is~~I~~GekiaIVGrTGsGKSTL~~lL~rl------------~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRH--INVTIHGGEKVGIVGRTGAGKSSLTLGLFRI------------NESAEGEIIIDGLN 1349 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------ccCCCCeEEECCEE
Confidence 366788888886543357876 9999999999999999999999999999999 99999999999988
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHH---------HHHHHH-----------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVK---------ELAQML-----------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~---------~l~~~~-----------~~~ls~g~ 234 (441)
+.......++...++. +|...+|.. |+++|+..+.. .+. +..... ...||+||
T Consensus 1350 I~~i~~~~LR~~i~iV--pQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITII--PQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred ccccCHHHHHhcCeEE--CCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 7554434444444444 444466664 99999974311 111 111111 12489999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+.+|......+.+.|++... .|||+++|. +... ..+|+|.|+ ++|++
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHR-----l~ti-~~~DrIlVl---d~G~I 1497 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR-----LNTI-MDYTRVIVL---DKGEV 1497 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHH-HhCCEEEEE---ECCEE
Confidence 998775 99999 999999999999999987644 499999999 6554 468999999 89999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
++.++...
T Consensus 1498 vE~G~~~e 1505 (1522)
T TIGR00957 1498 AEFGAPSN 1505 (1522)
T ss_pred EEECCHHH
Confidence 99987554
No 312
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.82 E-value=2.2e-21 Score=224.20 Aligned_cols=197 Identities=17% Similarity=0.262 Sum_probs=143.8
Q ss_pred hhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-----------
Q 013511 100 VSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI----------- 167 (441)
Q Consensus 100 l~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp----------- 167 (441)
++++|++++|..+ ...++++ +||++++|++++|+||+|||||||+++|+++ +||
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~--lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~------------ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKD--LTFSCDSKKTTAIVGETGSGKSTVMSLLMRF------------YDLKNDHHIVFKNE 1231 (1466)
T ss_pred EEEEEEEEECCCCCCCccccC--eeEEEcCCCEEEEECCCCCCHHHHHHHHHHh------------CCCccccccccccc
Confidence 6778999999643 2257766 9999999999999999999999999999999 887
Q ss_pred -------------------------------------------CCCcccCCceeeeeeccCcCCCCCCCCcccceEEEec
Q 013511 168 -------------------------------------------GQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG 204 (441)
Q Consensus 168 -------------------------------------------~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g 204 (441)
.+|+|.++|.++.......++...+ +.+|..++|
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~--~V~Qep~LF- 1308 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFS--IVSQEPMLF- 1308 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhcc--EeCCCCccc-
Confidence 6999999998765443333443344 444444565
Q ss_pred ccCccCCHHHHHH-----HHH---------HHHHHH-----------HHHhccCccceeee----------EEEeC-CCC
Q 013511 205 HATPSNNVELYKV-----LVK---------ELAQML-----------ERQFNGNAESRAAG----------MVINT-MGW 248 (441)
Q Consensus 205 ~~tv~en~~~~~~-----~~~---------~l~~~~-----------~~~ls~g~~~r~~~----------lIlDE-~~~ 248 (441)
+.|++||+.++.. .+. ++...+ ...|||||+||+++ ||+|| |+.
T Consensus 1309 ~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa 1388 (1466)
T PTZ00265 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388 (1466)
T ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 5799999988732 111 111111 12499999999876 99999 999
Q ss_pred CCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC----CCee-eCChHHHHHH-HHHHHH
Q 013511 249 IEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS----GGVV-SRNSKVRQKA-RSYRIR 319 (441)
Q Consensus 249 lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~----g~vv-~~~~~~~~~~-r~~~~~ 319 (441)
||....+.+.+.|++.. ..|+|+++|. +... +.||++.++ ++ |+++ +.++...... +...+.
T Consensus 1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHR-----lsti-~~aD~Ivvl---~~~~~~G~iv~e~Gth~eLl~~~~g~Y~ 1459 (1466)
T PTZ00265 1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHR-----IASI-KRSDKIVVF---NNPDRTGSFVQAHGTHEELLSVQDGVYK 1459 (1466)
T ss_pred cCHHHHHHHHHHHHHHhccCCCEEEEEech-----HHHH-HhCCEEEEE---eCCCCCCCEEEEecCHHHHHhcCCChHH
Confidence 99999999999999873 3499999999 6444 578999998 66 7744 6776443222 233444
Q ss_pred HHh
Q 013511 320 EYF 322 (441)
Q Consensus 320 ~yf 322 (441)
+++
T Consensus 1460 ~l~ 1462 (1466)
T PTZ00265 1460 KYV 1462 (1466)
T ss_pred HHH
Confidence 443
No 313
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.82 E-value=5.5e-22 Score=210.03 Aligned_cols=172 Identities=22% Similarity=0.337 Sum_probs=128.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++.+..++++ +|+++++|++++|+||||||||||+|+|+|+ .+|.+|+|.++|..
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~--i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~------------~~~~~G~I~~~g~~ 385 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRP--VSFTVPPGERVALVGPSGAGKSTLLNLLLGF------------VDPTEGSIAVNGVP 385 (529)
T ss_pred eEEEEEEEEECCCCCcccccc--eeEEECCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCEe
Confidence 366788888887643346765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-----HHH---------HHHHH-----------HHHHhccC
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-----LVK---------ELAQM-----------LERQFNGN 233 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-----~~~---------~l~~~-----------~~~~ls~g 233 (441)
........++ ..+.+.++..++|. .|++||+.++.. .+. ++.+. ....||+|
T Consensus 386 i~~~~~~~lr--~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 386 LADADADSWR--DQIAWVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred hhhCCHHHHH--hheEEEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 5433222222 23445555556665 599999987421 111 11111 12359999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
|+||+++ +|+|| ++.+|+...+.+.+.++++..+ ++|+++|+ +... +.+|++.+
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~-----~~~~-~~~d~i~~ 528 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHR-----LALA-ERADRIVV 528 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecC-----HHHH-HhCCEEEe
Confidence 9998776 99999 9999999999999999988554 99999999 5443 46788765
No 314
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.82 E-value=4.9e-21 Score=186.21 Aligned_cols=185 Identities=15% Similarity=0.251 Sum_probs=125.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+.+++.|+++. .. .++++ +||++.+|++++|+|+||||||||+++|+|+ ++|.+|+|.++|
T Consensus 37 ~~~l~i~nls~~--~~--~vL~~--vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl------------~~p~~G~I~i~g 98 (282)
T cd03291 37 DNNLFFSNLCLV--GA--PVLKN--INLKIEKGEMLAITGSTGSGKTSLLMLILGE------------LEPSEGKIKHSG 98 (282)
T ss_pred CCeEEEEEEEEe--cc--cceee--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECC
Confidence 345777787764 22 36665 9999999999999999999999999999999 999999999988
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH--------HHH-----HHHHHH-----------HHHhcc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------LVK-----ELAQML-----------ERQFNG 232 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------~~~-----~l~~~~-----------~~~ls~ 232 (441)
.+.. .++...++. .|+.+|+.+... ... ...+.. ...||+
T Consensus 99 ~i~y---------------v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSg 162 (282)
T cd03291 99 RISF---------------SSQFSWIMP-GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSG 162 (282)
T ss_pred EEEE---------------EeCcccccc-cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCH
Confidence 4321 112222333 366666544210 001 111111 136899
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHHHHH-HHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELLLHA-IDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~l-i~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
|++||+.+ +|+|| ++++|+..++.+.+. ++.+.. .+||+++|+ +... ..|+++.++ ++
T Consensus 163 Gq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~-----~~~~-~~~d~i~~l---~~ 233 (282)
T cd03291 163 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSK-----MEHL-KKADKILIL---HE 233 (282)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC-----hHHH-HhCCEEEEE---EC
Confidence 99988765 99999 999999998888764 455433 488999999 4443 358999888 88
Q ss_pred CCeeeCChHHHHHHHHHHHHHHhcC
Q 013511 300 GGVVSRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 300 g~vv~~~~~~~~~~r~~~~~~yf~g 324 (441)
|.++..+.......+...+.++|++
T Consensus 234 G~i~~~g~~~~~~~~~~~~~~~~~~ 258 (282)
T cd03291 234 GSSYFYGTFSELQSLRPDFSSKLMG 258 (282)
T ss_pred CEEEEECCHHHHHhcchHHHHHHhc
Confidence 8888776533222122345555655
No 315
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=1.2e-21 Score=180.69 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=111.8
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
++++|+++.|++. .+.+ +||++.+|++++|+|+||||||||+|+|+|+ ++|.+|+|.++|...
T Consensus 2 l~~~~l~~~~~~~---~l~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~i 64 (195)
T PRK13541 2 LSLHQLQFNIEQK---NLFD--LSITFLPSAITYIKGANGCGKSSLLRMIAGI------------MQPSSGNIYYKNCNI 64 (195)
T ss_pred eEEEEeeEEECCc---EEEE--EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC------------CCCCCcEEEECCccc
Confidence 4566777777543 2332 8999999999999999999999999999999 999999999999643
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------HH---------HHHHHHHHHhccCccceeee----
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------VK---------ELAQMLERQFNGNAESRAAG---- 240 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------~~---------~l~~~~~~~ls~g~~~r~~~---- 240 (441)
... . ...+.+..+...++...|+.+|+.+.... +. ...+.....||+|++||+++
T Consensus 65 ~~~-----~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al 138 (195)
T PRK13541 65 NNI-----A-KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLI 138 (195)
T ss_pred Chh-----h-hhhEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHH
Confidence 211 0 11122223333456678999998764321 11 11233445699999988765
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcC--CCEEEEeCCc
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~--~~~Vivi~h~ 275 (441)
+|+|| ++++|+..++.+.++++... ..+|++++|+
T Consensus 139 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 182 (195)
T PRK13541 139 ACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHL 182 (195)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999 99999999999999997542 2489999998
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.81 E-value=4.7e-21 Score=168.21 Aligned_cols=126 Identities=17% Similarity=0.240 Sum_probs=98.1
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATP 182 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~ 182 (441)
.|+++.|++. .++++ ++|++.+|++++|+||||||||||+++|+|+ ++|.+|+|.++|..
T Consensus 4 ~~l~~~~~~~--~~l~~--~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~------------~~~~~G~i~~~~~~---- 63 (144)
T cd03221 4 ENLSKTYGGK--LLLKD--ISLTINPGDRIGLVGRNGAGKSTLLKLIAGE------------LEPDEGIVTWGSTV---- 63 (144)
T ss_pred EEEEEEECCc--eEEEe--eEEEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCceEEEECCeE----
Confidence 4455555443 35655 8999999999999999999999999999999 99999999998841
Q ss_pred ccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCcccee----------eeEEEeC-CCCCCc
Q 013511 183 IELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRA----------AGMVINT-MGWIEG 251 (441)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~----------~~lIlDE-~~~lD~ 251 (441)
.+.+.++ ||+|++||+ .++|+|| ++++|+
T Consensus 64 ---------~i~~~~~-------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 64 ---------KIGYFEQ-------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred ---------EEEEEcc-------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 1111111 444444333 4699999 999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 252 VGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 252 ~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
..++.+.+++++++ .+|++++|+ +....+.||++.++
T Consensus 104 ~~~~~l~~~l~~~~-~til~~th~-----~~~~~~~~d~v~~l 140 (144)
T cd03221 104 ESIEALEEALKEYP-GTVILVSHD-----RYFLDQVATKIIEL 140 (144)
T ss_pred HHHHHHHHHHHHcC-CEEEEEECC-----HHHHHHhCCEEEEE
Confidence 99999999999885 488999999 77666778998888
No 317
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.81 E-value=4.8e-21 Score=201.39 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=133.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 255 ~~~l~~~~l~~-------~~l~~--vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~------------~~p~~G~I~~~g 313 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVND--VSFTLRKGEILGVSGLMGAGRTELMKVLYGA------------LPRTSGYVTLDG 313 (501)
T ss_pred CcEEEEeCccc-------CCccc--ceEEEcCCcEEEEecCCCCCHHHHHHHHhCC------------CCCCceEEEECC
Confidence 35777888874 24554 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccceE---EEecccCccCCHHHHHH-----------------HHHHH----------HHHH
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLV---YFFGHATPSNNVELYKV-----------------LVKEL----------AQML 226 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~tv~en~~~~~~-----------------~~~~l----------~~~~ 226 (441)
.......... ..+.++.+.++.. .+++.+|+.+|+.+... .+.++ .+..
T Consensus 314 ~~i~~~~~~~-~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 392 (501)
T PRK10762 314 HEVVTRSPQD-GLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA 392 (501)
T ss_pred EECCCCCHHH-HHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc
Confidence 6542110000 0112344444432 35677889888865210 01111 1233
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
...||+||+||+.+ +|+|| +++||+..++.+.++++++.. .+||+++|+ +....+.||++.+
T Consensus 393 ~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd-----~~~~~~~~d~v~~ 467 (501)
T PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE-----MPEVLGMSDRILV 467 (501)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCC-----HHHHHhhCCEEEE
Confidence 45699999998775 99999 999999999999999999854 389999999 7777788999999
Q ss_pred EEecCCCCeeeCCh
Q 013511 294 VKLQKSGGVVSRNS 307 (441)
Q Consensus 294 l~l~~~g~vv~~~~ 307 (441)
+ ++|.++..+.
T Consensus 468 l---~~G~i~~~~~ 478 (501)
T PRK10762 468 M---HEGRISGEFT 478 (501)
T ss_pred E---ECCEEEEEec
Confidence 9 7888775543
No 318
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.81 E-value=2.6e-21 Score=178.33 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=134.4
Q ss_pred CCCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 95 DETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 95 ~~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
...++++++|++..|+++ .++++ +|.++++|+..+|+||||||||||+++++++ ..|++|.+.+
T Consensus 27 ~~~~li~l~~v~v~r~gk--~iL~~--isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~------------~~pssg~~~~ 90 (257)
T COG1119 27 INEPLIELKNVSVRRNGK--KILGD--LSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE------------HPPSSGDVTL 90 (257)
T ss_pred CCcceEEecceEEEECCE--eeccc--cceeecCCCcEEEECCCCCCHHHHHHHHhcc------------cCCCCCceee
Confidence 445679999999999998 46655 9999999999999999999999999999999 9999999999
Q ss_pred Cceeeeeecc-CcCCCCCCCCc--------------ccceEEEecccCccCC----HHHH-----HH--HHHHHHHHHHH
Q 013511 175 PGCIAATPIE-LPIDPVEGIPL--------------EMPLVYFFGHATPSNN----VELY-----KV--LVKELAQMLER 228 (441)
Q Consensus 175 ~G~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~g~~tv~en----~~~~-----~~--~~~~l~~~~~~ 228 (441)
.|........ ..++...|++. ..-.+.+|....+..+ ..+- .. ...+++++...
T Consensus 91 ~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~ 170 (257)
T COG1119 91 LGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG 170 (257)
T ss_pred eeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh
Confidence 8875432211 22223333221 1112344444444331 0000 00 13446677778
Q ss_pred HhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC----EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 229 QFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN----VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 229 ~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~----~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
.||.|+++|+-+ +|+|| +.++|..+++.+.+.+.++..+ ++|++||. .+++....+++..
T Consensus 171 ~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh-----~eEi~~~~th~ll 245 (257)
T COG1119 171 SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH-----AEEIPPCFTHRLL 245 (257)
T ss_pred hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcc-----hhhcccccceEEE
Confidence 899999987654 99999 9999999999999998887543 77888887 6666655677666
Q ss_pred EEecCCCCeeeCC
Q 013511 294 VKLQKSGGVVSRN 306 (441)
Q Consensus 294 l~l~~~g~vv~~~ 306 (441)
+ ++|+++..+
T Consensus 246 l---~~g~v~~~g 255 (257)
T COG1119 246 L---KEGEVVAQG 255 (257)
T ss_pred e---eCCceeecc
Confidence 6 888887544
No 319
>PTZ00243 ABC transporter; Provisional
Probab=99.81 E-value=2.4e-21 Score=225.49 Aligned_cols=186 Identities=16% Similarity=0.135 Sum_probs=141.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++++|.+....++++ +||++++|++++|+|++|||||||+++|.++ ++|.+|+|.++|.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~--vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl------------~~p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRG--VSFRIAPREKVGIVGRTGSGKSTLLLTFMRM------------VEVCGGEIRVNGRE 1373 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeec--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEECCEE
Confidence 366788888886644457876 9999999999999999999999999999999 99999999999988
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHH------HHHH-------H-------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKE------LAQM-------L-------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~------l~~~-------~-------~~~ls~g~ 234 (441)
+.....+.++.. +.+.+|...+|. -|+++|+..+.. .+.+ +.+. + ...||+||
T Consensus 1374 i~~i~l~~LR~~--I~iVpQdp~LF~-gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQ 1450 (1560)
T PTZ00243 1374 IGAYGLRELRRQ--FSMIPQDPVLFD-GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQ 1450 (1560)
T ss_pred cccCCHHHHHhc--ceEECCCCcccc-ccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHH
Confidence 755433344433 444444446665 499999976421 1111 0011 1 13589999
Q ss_pred cceee-----------eEEEeC-CCCCCchhHHHHHHHHHHcC-CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAA-----------GMVINT-MGWIEGVGYELLLHAIDTFK-ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~-----------~lIlDE-~~~lD~~~~~~l~~li~~~~-~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||++ +||+|| |+.+|....+.+.+.|++.. ..|||+++|. +... ..+|+|.++ ++|+
T Consensus 1451 rQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHR-----l~ti-~~~DrIlVL---d~G~ 1521 (1560)
T PTZ00243 1451 RQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHR-----LHTV-AQYDKIIVM---DHGA 1521 (1560)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEecc-----HHHH-HhCCEEEEE---ECCE
Confidence 98654 499999 99999999999999998764 4599999999 6544 468999999 8999
Q ss_pred eeeCChHHH
Q 013511 302 VVSRNSKVR 310 (441)
Q Consensus 302 vv~~~~~~~ 310 (441)
+++.++...
T Consensus 1522 VvE~Gt~~e 1530 (1560)
T PTZ00243 1522 VAEMGSPRE 1530 (1560)
T ss_pred EEEECCHHH
Confidence 999887443
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.81 E-value=4e-21 Score=204.29 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+++
T Consensus 322 ~~~l~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~------------~~p~~G~i~~~~ 385 (556)
T PRK11819 322 DKVIEAENLSKSFGDR--LLIDD--LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ------------EQPDSGTIKIGE 385 (556)
T ss_pred CeEEEEEeEEEEECCe--eeecc--eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECC
Confidence 4589999999999764 46765 9999999999999999999999999999999 999999998744
Q ss_pred eeeeeeccCcCCCCCCCCcccceE-EEecccCccCCHHHHHH-------------HHHH------HHHHHHHHhccCccc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLV-YFFGHATPSNNVELYKV-------------LVKE------LAQMLERQFNGNAES 236 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~tv~en~~~~~~-------------~~~~------l~~~~~~~ls~g~~~ 236 (441)
.. .+.+.++.. .+++.+|+.+|+.+... .++. ..+.....||+|++|
T Consensus 386 ~~-------------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 452 (556)
T PRK11819 386 TV-------------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERN 452 (556)
T ss_pred ce-------------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHH
Confidence 21 122222221 45666777777765311 1111 123345679999999
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC-CCee
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS-GGVV 303 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~-g~vv 303 (441)
|+.+ +|+|| +++||+.+++.+.++|+++.. +||++||+ +......||++.++ ++ |.+.
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vtHd-----~~~~~~~~d~i~~l---~~~g~~~ 522 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPG-CAVVISHD-----RWFLDRIATHILAF---EGDSQVE 522 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECC-----HHHHHHhCCEEEEE---ECCCeEE
Confidence 8775 99999 999999999999999999864 78899999 77777789998877 54 5554
No 321
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.81 E-value=8.4e-21 Score=184.91 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=132.9
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccC---cCCCCCCCCccc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIEL---PIDPVEGIPLEM 197 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~---~~~~~~~~~~~~ 197 (441)
++|++.++|+.++|+|.+|||||||-+.|.++ +. .+|+|.+.|+.+.....+ |++.+..++||.
T Consensus 305 ~isl~L~~gqTlGlVGESGSGKsTlG~allrL------------~~-s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQD 371 (534)
T COG4172 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRL------------IP-SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQD 371 (534)
T ss_pred cceeEecCCCeEEEEecCCCCcchHHHHHHhh------------cC-cCceEEECCccccccChhhhhhhhhhceEEEeC
Confidence 49999999999999999999999999999997 55 459999999987554433 555667788898
Q ss_pred ceEEEecccCccCCHHHHHHH--------------HH---------HHHHHHHHHhccCccceeee----------EEEe
Q 013511 198 PLVYFFGHATPSNNVELYKVL--------------VK---------ELAQMLERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 198 ~~~~~~g~~tv~en~~~~~~~--------------~~---------~l~~~~~~~ls~g~~~r~~~----------lIlD 244 (441)
|...+-+.+|+.+-+.-++.. .. ...++++.++||||+||+++ +++|
T Consensus 372 PygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LD 451 (534)
T COG4172 372 PYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451 (534)
T ss_pred CCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEec
Confidence 855555555554433333221 11 12356778899999999887 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHH
Q 013511 245 T-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~ 309 (441)
| |+.||-.-+..+.+++++++.+ .-++++|| |.-+-.+|++|.|| ++|.+|+.++..
T Consensus 452 EPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD-----L~VvrAl~~~viVm---~~GkiVE~G~~~ 512 (534)
T COG4172 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD-----LAVVRALCHRVIVM---RDGKIVEQGPTE 512 (534)
T ss_pred CCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc-----HHHHHHhhceEEEE---eCCEEeeeCCHH
Confidence 9 9999998889999999998754 67788999 88887899999999 999999998743
No 322
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.6e-21 Score=168.65 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=118.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|++.+|++..-+... .+. +++|++.+|+.+-|.||||||||||+|+|+|+ +.|++|+|.+.|..
T Consensus 2 ~L~a~~L~~~R~e~~--lf~--~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL------------l~p~~G~v~~~~~~ 65 (209)
T COG4133 2 MLEAENLSCERGERT--LFS--DLSFTLNAGEALQITGPNGAGKTTLLRILAGL------------LRPDAGEVYWQGEP 65 (209)
T ss_pred cchhhhhhhccCcce--eec--ceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc------------cCCCCCeEEecCCC
Confidence 566778877776653 343 49999999999999999999999999999999 99999999999864
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHH-----------------HHHHHHHHhccCccceeee-
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKE-----------------LAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~-----------------l~~~~~~~ls~g~~~r~~~- 240 (441)
+....+.. .....|.-.....=..+|+.||+.||...... +.+.....||.||++|+++
T Consensus 66 i~~~~~~~---~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlA 142 (209)
T COG4133 66 IQNVRESY---HQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALA 142 (209)
T ss_pred CccchhhH---HHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHH
Confidence 43222110 11111111122345568999999999775321 1233446799999998876
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCch
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEK 276 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~ 276 (441)
+|+|| ++.+|..+...+..++...... .|+..||..
T Consensus 143 rL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 143 RLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 99999 9999999999999999886544 788888873
No 323
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.81 E-value=6.4e-21 Score=189.39 Aligned_cols=150 Identities=18% Similarity=0.313 Sum_probs=116.9
Q ss_pred EECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHH
Q 013511 134 VVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVE 213 (441)
Q Consensus 134 IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~ 213 (441)
|+||||||||||+|+|+|+ ++|++|+|.++|...... .+ ....+.+.++...+|+++|+.+|+.
T Consensus 1 l~G~nGsGKSTLl~~iaGl------------~~p~~G~I~i~g~~i~~~--~~--~~~~i~~v~q~~~l~~~~tv~enl~ 64 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF------------EQPDSGSIMLDGEDVTNV--PP--HLRHINMVFQSYALFPHMTVEENVA 64 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC------------CCCCceEEEECCEECCCC--CH--HHCCEEEEecCccccCCCcHHHHHH
Confidence 6899999999999999999 999999999999754211 11 1233445555557889999999998
Q ss_pred HHHHH-----------HHHH---------HHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHH
Q 013511 214 LYKVL-----------VKEL---------AQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAID 262 (441)
Q Consensus 214 ~~~~~-----------~~~l---------~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~ 262 (441)
+.... +.++ .++....||+||+||+++ +|+|| +++||+..++.+.++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~ 144 (325)
T TIGR01187 65 FGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELK 144 (325)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 75321 1111 233446799999999876 99999 99999999999999998
Q ss_pred HcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 263 TFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 263 ~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
++.. .+||++||+ +..+.+.||++.++ ++|.++..++
T Consensus 145 ~l~~~~g~tiiivTHd-----~~e~~~~~d~i~vl---~~G~i~~~g~ 184 (325)
T TIGR01187 145 TIQEQLGITFVFVTHD-----QEEAMTMSDRIAIM---RKGKIAQIGT 184 (325)
T ss_pred HHHHhcCCEEEEEeCC-----HHHHHHhCCEEEEE---ECCEEEEEcC
Confidence 8742 389999999 87777889999999 8899887665
No 324
>PRK13409 putative ATPase RIL; Provisional
Probab=99.81 E-value=5.8e-21 Score=203.23 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=124.3
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++. .+++ +++++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++-
T Consensus 338 ~~~l~~~~ls~~~~~~---~l~~--~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl------------~~p~~G~I~~~~ 400 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF---SLEV--EGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV------------LKPDEGEVDPEL 400 (590)
T ss_pred ceEEEEcceEEEECCE---EEEe--cceEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCceEEEEee
Confidence 4689999999988763 3544 8999999999999999999999999999999 999999997641
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH---------------HHHHHHHHHHHhccCccceeee-
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL---------------VKELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------~~~l~~~~~~~ls~g~~~r~~~- 240 (441)
.+.+.++...++...|+.+|+.+.... +..+.+.....||+||+||+++
T Consensus 401 ---------------~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiA 465 (590)
T PRK13409 401 ---------------KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA 465 (590)
T ss_pred ---------------eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHH
Confidence 112222222334567888777653211 1122344456799999999876
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+|+|| +++||...+..+.++|+++. ..+||+++|| +..+...||++.++
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD-----~~~~~~~aDrvivl 527 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD-----IYMIDYISDRLMVF 527 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 99999 99999999999999999984 2489999999 77777789998888
No 325
>PLN03211 ABC transporter G-25; Provisional
Probab=99.81 E-value=2.2e-20 Score=201.22 Aligned_cols=177 Identities=16% Similarity=0.183 Sum_probs=135.5
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC--CCcccCCceee
Q 013511 102 YVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG--QGAITIPGCIA 179 (441)
Q Consensus 102 ~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~--~G~i~~~G~~~ 179 (441)
..|+++.|+++ .++++ +|+++++|++++|+||||||||||+++|+|. ++|+ +|+|.++|...
T Consensus 71 ~~~l~~~~~~~--~iL~~--vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~------------~~~~~~sG~I~inG~~~ 134 (659)
T PLN03211 71 ISDETRQIQER--TILNG--VTGMASPGEILAVLGPSGSGKSTLLNALAGR------------IQGNNFTGTILANNRKP 134 (659)
T ss_pred cccccccCCCC--eeeeC--CEEEEECCEEEEEECCCCCCHHHHHHHHhCC------------CCCCceeEEEEECCEEC
Confidence 45677888764 46765 9999999999999999999999999999999 7875 89999999753
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHHH--------------HHHHhc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQM--------------LERQFN 231 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~~--------------~~~~ls 231 (441)
. .... ..+.+..+...+++.+|++||+.+.... +.++.+. ....||
T Consensus 135 ~----~~~~--~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 208 (659)
T PLN03211 135 T----KQIL--KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS 208 (659)
T ss_pred c----hhhc--cceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcC
Confidence 2 1111 2345555566788899999999875311 1111111 113489
Q ss_pred cCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHH-HHhcCCCCeEEEEec
Q 013511 232 GNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLR-DVLKNRPNVDVVKLQ 297 (441)
Q Consensus 232 ~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~-~~~~~~~~v~vl~l~ 297 (441)
+||+||+++ +++|| +++||...+..+.++++++.. .+||+++|+ +. +..+.+|++.++
T Consensus 209 gGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~-----~~~~i~~~~D~iilL--- 280 (659)
T PLN03211 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQ-----PSSRVYQMFDSVLVL--- 280 (659)
T ss_pred hhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecC-----CCHHHHHhhceEEEe---
Confidence 999999876 99999 999999999999999998753 489999998 54 345678999888
Q ss_pred CCCCeeeCChH
Q 013511 298 KSGGVVSRNSK 308 (441)
Q Consensus 298 ~~g~vv~~~~~ 308 (441)
++|+++..++.
T Consensus 281 ~~G~iv~~G~~ 291 (659)
T PLN03211 281 SEGRCLFFGKG 291 (659)
T ss_pred cCCcEEEECCH
Confidence 88999888763
No 326
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.81 E-value=2e-20 Score=176.21 Aligned_cols=156 Identities=17% Similarity=0.247 Sum_probs=112.6
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEe
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFF 203 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
|++++|++++|+|+||||||||+|+|+|+ ++|++|+|.++|..... . ...+.+.++...++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~------------~~~~~G~i~~~g~~~~~-----~--~~~i~~v~q~~~~~ 61 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGL------------IPPAKGTVKVAGASPGK-----G--WRHIGYVPQRHEFA 61 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCccchH-----h--hCcEEEeccccccc
Confidence 45789999999999999999999999999 99999999999964311 1 12233333322222
Q ss_pred --cccCccCCHHHHH---------------HHHHHH---------HHHHHHHhccCccceeee----------EEEeC-C
Q 013511 204 --GHATPSNNVELYK---------------VLVKEL---------AQMLERQFNGNAESRAAG----------MVINT-M 246 (441)
Q Consensus 204 --g~~tv~en~~~~~---------------~~~~~l---------~~~~~~~ls~g~~~r~~~----------lIlDE-~ 246 (441)
...|+.+|+.++. ..+..+ .+.....||+|++||+++ +|+|| +
T Consensus 62 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~ 141 (223)
T TIGR03771 62 WDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPF 141 (223)
T ss_pred CCCCccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2356766654321 011111 123345699999988765 99999 9
Q ss_pred CCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 247 GWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 247 ~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+++|+..++.+.++++++.. .+||+++|+ +....+.||++.++ + |.++..+.
T Consensus 142 ~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~-----~~~~~~~~d~i~~l---~-G~i~~~~~ 195 (223)
T TIGR03771 142 TGLDMPTQELLTELFIELAGAGTAILMTTHD-----LAQAMATCDRVVLL---N-GRVIADGT 195 (223)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHhCCEEEEE---C-CEEEeecC
Confidence 99999999999999998753 389999999 77777788998765 3 77776654
No 327
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.9e-20 Score=160.37 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=134.6
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
..|.+++.++++.|+... .-+ ++||++.+||+.+|+|.+|||||||+++|++. +.|++|++.+.
T Consensus 3 ~~PLL~V~~lsk~Yg~~~--gc~--~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r------------l~p~~G~v~Y~ 66 (258)
T COG4107 3 DKPLLSVSGLSKLYGPGK--GCR--DVSFDLYPGEVLGIVGESGSGKTTLLKCISGR------------LTPDAGTVTYR 66 (258)
T ss_pred CCcceeehhhhhhhCCCc--Ccc--ccceeecCCcEEEEEecCCCcHHhHHHHHhcc------------cCCCCCeEEEE
Confidence 357889999999999863 333 49999999999999999999999999999999 99999999874
Q ss_pred ce---ee--eeecc----CcCCCCCCCCcccceEEEecccCccCCHHH-----HHHH---H----HHHH----------H
Q 013511 176 GC---IA--ATPIE----LPIDPVEGIPLEMPLVYFFGHATPSNNVEL-----YKVL---V----KELA----------Q 224 (441)
Q Consensus 176 G~---~~--~~~~~----~~~~~~~~~~~~~~~~~~~g~~tv~en~~~-----~~~~---~----~~l~----------~ 224 (441)
-. .. ....+ ...+..-+++.|+|.-.+-...|...|+-- +.+. + .++. +
T Consensus 67 ~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiD 146 (258)
T COG4107 67 MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRID 146 (258)
T ss_pred cCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCccccc
Confidence 32 11 11111 112233456667776555555555556521 1111 1 1111 2
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCC
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
..+..+|+|++||..+ +++|| ++++|..-+..++++++.+-.+ .++++||| +.-+--++++
T Consensus 147 D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHD-----l~VarLla~r 221 (258)
T COG4107 147 DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHD-----LAVARLLADR 221 (258)
T ss_pred CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEech-----hHHHHHhhhc
Confidence 2345689999988655 89999 9999998888888888887544 77888999 6655457889
Q ss_pred eEEEEecCCCCeeeCCh
Q 013511 291 VDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~~~g~vv~~~~ 307 (441)
..+| +.|.+++.+-
T Consensus 222 lmvm---k~g~vve~GL 235 (258)
T COG4107 222 LMVM---KQGQVVESGL 235 (258)
T ss_pred ceee---cCCCEecccc
Confidence 8899 9999998764
No 328
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.80 E-value=1.3e-20 Score=180.89 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=112.9
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc---------
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT--------- 173 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~--------- 173 (441)
.|++++|+... .++++ +++ +.+|++++|+||||||||||+|+|+|+ ++|++|+|.
T Consensus 4 ~~~~~~y~~~~-~~l~~--i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl------------~~p~~G~I~~~~~~~~~~ 67 (255)
T cd03236 4 DEPVHRYGPNS-FKLHR--LPV-PREGQVLGLVGPNGIGKSTALKILAGK------------LKPNLGKFDDPPDWDEIL 67 (255)
T ss_pred cCcceeecCcc-hhhhc--CCC-CCCCCEEEEECCCCCCHHHHHHHHhCC------------cCCCCceEeeccccchhh
Confidence 36778886532 36655 884 999999999999999999999999999 999999996
Q ss_pred --CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------HHHHH---------HHHHHHHHhccCccc
Q 013511 174 --IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------VLVKE---------LAQMLERQFNGNAES 236 (441)
Q Consensus 174 --~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------~~~~~---------l~~~~~~~ls~g~~~ 236 (441)
++|................+.+..+...+++. ++.+++.... ....+ ..+.....||+|++|
T Consensus 68 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 146 (255)
T cd03236 68 DEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQ 146 (255)
T ss_pred hhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 55654321111000001111121222222331 3333332211 11111 123344569999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
|+++ +|+|| ++++|+..++.+.+++++++. .+||+++|+ +....+.||++.++
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd-----~~~~~~~ad~i~~l 212 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHD-----LAVLDYLSDYIHCL 212 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECC-----HHHHHHhCCEEEEE
Confidence 8765 99999 999999999999999988753 489999999 77666678998888
No 329
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.80 E-value=8.2e-21 Score=204.77 Aligned_cols=173 Identities=18% Similarity=0.234 Sum_probs=129.6
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+ |
T Consensus 317 ~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~------------~~p~~G~i~~-~ 379 (635)
T PRK11147 317 KIVFEMENVNYQIDGK--QLVKD--FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ------------LQADSGRIHC-G 379 (635)
T ss_pred CceEEEeeeEEEECCe--EEEcC--cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCcEEEE-C
Confidence 4578999999999764 36655 9999999999999999999999999999999 9999999987 4
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------HHH----------HHHHHHHHHhccCccce
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV---------LVK----------ELAQMLERQFNGNAESR 237 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~---------~~~----------~l~~~~~~~ls~g~~~r 237 (441)
... ..++..+.+ ..+++++|+.+|+.+... .+. ...+.....||+|++||
T Consensus 380 ~~~----------~i~y~~q~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqR 448 (635)
T PRK11147 380 TKL----------EVAYFDQHR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNR 448 (635)
T ss_pred CCc----------EEEEEeCcc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHH
Confidence 211 111222211 235666777777654210 011 11233456799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecC-CCCeeeC
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQK-SGGVVSR 305 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~-~g~vv~~ 305 (441)
+.+ ||+|| |++||+..++.+.++++++.. +||++||+ +......|+++.++ + +|.+...
T Consensus 449 l~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~-tvi~vSHd-----~~~~~~~~d~i~~l---~~~g~i~~~ 519 (635)
T PRK11147 449 LLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQG-TVLLVSHD-----RQFVDNTVTECWIF---EGNGKIGRY 519 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCC-eEEEEECC-----HHHHHHhcCEEEEE---eCCCeEEEc
Confidence 765 99999 999999999999999999854 89999999 55555678998877 6 6777664
Q ss_pred C
Q 013511 306 N 306 (441)
Q Consensus 306 ~ 306 (441)
.
T Consensus 520 ~ 520 (635)
T PRK11147 520 V 520 (635)
T ss_pred c
Confidence 3
No 330
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.80 E-value=8.8e-21 Score=201.59 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=128.2
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.+.+
T Consensus 320 ~~~l~~~~l~~~~~~~--~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~------------~~p~~G~i~~~~ 383 (552)
T TIGR03719 320 DKVIEAENLSKGFGDK--LLIDD--LSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ------------EQPDSGTIKIGE 383 (552)
T ss_pred CeEEEEeeEEEEECCe--eeecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCeEEEECC
Confidence 4689999999999764 46765 9999999999999999999999999999999 999999998744
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH-------------HHHH------HHHHHHHHhccCccce
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV-------------LVKE------LAQMLERQFNGNAESR 237 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~-------------~~~~------l~~~~~~~ls~g~~~r 237 (441)
.. ..++.++.+ ..+++.+|+.+|+.++.. .+.. ..+.....||+|++||
T Consensus 384 ~~-----------~i~~v~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr 451 (552)
T TIGR03719 384 TV-----------KLAYVDQSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR 451 (552)
T ss_pred ce-----------EEEEEeCCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHH
Confidence 21 112222221 124556677777655311 1111 1223456799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC-CCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS-GGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~-g~vv 303 (441)
+.+ +|+|| +++||+.+++.+.++|+++.. +||++||+ +....+.|+++.++ +. |.+.
T Consensus 452 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~viivsHd-----~~~~~~~~d~i~~l---~~~~~~~ 520 (552)
T TIGR03719 452 VHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG-CAVVISHD-----RWFLDRIATHILAF---EGDSHVE 520 (552)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCC-eEEEEeCC-----HHHHHHhCCEEEEE---ECCCeEE
Confidence 775 99999 999999999999999999864 78999999 77666789998887 54 4554
No 331
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.80 E-value=4.9e-21 Score=206.72 Aligned_cols=186 Identities=18% Similarity=0.233 Sum_probs=136.3
Q ss_pred CchhHHHHHHHHhhhh--hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 98 PMVSYVNVNAVLEGRR--NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~--~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
+|++++|+++.|+... ..++++ +||++.+|++++|+||||||||||+|+|+|+ ++|++|++.++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~--vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl------------~~~~~G~i~~~ 68 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKG--ISLDIYAGEMVAIVGASGSGKSTLMNILGCL------------DKPTSGTYRVA 68 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC------------CCCCCeEEEEC
Confidence 4788889999885321 246765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCC--CCCCCCcccceEEEecccCccCCHHHHHHH-----------HHH---------HHHHHHHHhccC
Q 013511 176 GCIAATPIELPID--PVEGIPLEMPLVYFFGHATPSNNVELYKVL-----------VKE---------LAQMLERQFNGN 233 (441)
Q Consensus 176 G~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-----------~~~---------l~~~~~~~ls~g 233 (441)
|............ .+..+.+.++...+|++.|+.+|+.+.... ..+ ..+.....||+|
T Consensus 69 g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~G 148 (648)
T PRK10535 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGG 148 (648)
T ss_pred CEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHH
Confidence 9754322111110 112344444445788889999998763211 111 112233568999
Q ss_pred ccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
|+||+.+ +|+|| ++++|...++.+.+++++++. .++++++|+ ++.. ..||++.++ ++|
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~-----~~~~-~~~d~i~~l---~~G 219 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD-----PQVA-AQAERVIEI---RDG 219 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC-----HHHH-HhCCEEEEE---ECC
Confidence 9988765 99999 999999999999999998853 389999999 5444 358998888 677
Q ss_pred CeeeCC
Q 013511 301 GVVSRN 306 (441)
Q Consensus 301 ~vv~~~ 306 (441)
.+++.+
T Consensus 220 ~i~~~g 225 (648)
T PRK10535 220 EIVRNP 225 (648)
T ss_pred EEEeec
Confidence 776544
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.8e-21 Score=204.27 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=124.1
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.+.+
T Consensus 310 ~~~l~~~~l~~~y~~~--~il~~--isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~------------~~p~~G~i~~~~ 373 (638)
T PRK10636 310 NPLLKMEKVSAGYGDR--IILDS--IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE------------LAPVSGEIGLAK 373 (638)
T ss_pred CceEEEEeeEEEeCCe--eeecc--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEEECC
Confidence 4588999999999764 46665 9999999999999999999999999999999 999999998864
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHH---------HHHHHH------HHHHHHHHHhccCccceeee-
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVEL---------YKVLVK------ELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~---------~~~~~~------~l~~~~~~~ls~g~~~r~~~- 240 (441)
....... ++.+...+....++.+++.. ....+. ...+.....||+|++||+.+
T Consensus 374 ~~~igy~-----------~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 374 GIKLGYF-----------AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred CEEEEEe-----------cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 2111111 11110111122233222210 001111 12234557799999998876
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
||+|| |++||+..++.+.++|+++.. +||+++|| +....+.|+++.++ .+|.++
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~g-tvi~vSHd-----~~~~~~~~d~i~~l---~~G~i~ 506 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEG-ALVVVSHD-----RHLLRSTTDDLYLV---HDGKVE 506 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCC-eEEEEeCC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 99999 999999999999999999954 89999999 66666679999888 788876
No 333
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=1.3e-19 Score=168.86 Aligned_cols=170 Identities=15% Similarity=0.159 Sum_probs=121.9
Q ss_pred hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCC
Q 013511 114 NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGI 193 (441)
Q Consensus 114 ~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~ 193 (441)
..+.++ +||++.+|++++++|+|||||||++|+|.|+ +-|++|.|.++|.+-....+ ..-...++
T Consensus 37 ~~AVqd--isf~IP~G~ivgflGaNGAGKSTtLKmLTGl------------l~p~~G~v~V~G~~Pf~~~~-~~~~~~~~ 101 (325)
T COG4586 37 IEAVQD--ISFEIPKGEIVGFLGANGAGKSTTLKMLTGL------------LLPTSGKVRVNGKDPFRRRE-EYLRSIGL 101 (325)
T ss_pred hhhhhe--eeeecCCCcEEEEEcCCCCcchhhHHHHhCc------------cccCCCeEEecCcCcchhHH-HHHHHHHH
Confidence 346655 9999999999999999999999999999999 99999999999964211000 00011122
Q ss_pred CcccceEEEecccCccCCHHHHHH-----------HH---------HHHHHHHHHHhccCccceeee----------EEE
Q 013511 194 PLEMPLVYFFGHATPSNNVELYKV-----------LV---------KELAQMLERQFNGNAESRAAG----------MVI 243 (441)
Q Consensus 194 ~~~~~~~~~~g~~tv~en~~~~~~-----------~~---------~~l~~~~~~~ls~g~~~r~~~----------lIl 243 (441)
.+. +...+..++.+.+.+..... .+ +...+...++||-||+.|+.+ +++
T Consensus 102 v~g-qk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfL 180 (325)
T COG4586 102 VMG-QKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFL 180 (325)
T ss_pred Hhh-hhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 211 11122233334443322111 11 112234457799999876554 999
Q ss_pred eC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 244 NT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 244 DE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
|| |=+||...+..+.+.+++.+.. +|+..||+ +.+..+.|++|..+ +.|+++..++
T Consensus 181 DEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~-----~~di~~lc~rv~~I---~~Gqlv~dg~ 240 (325)
T COG4586 181 DEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHI-----FDDIATLCDRVLLI---DQGQLVFDGT 240 (325)
T ss_pred cCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecc-----hhhHHHhhhheEEe---eCCcEeeccc
Confidence 99 9999999999999999998753 99999999 99999999999998 9999998876
No 334
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.3e-20 Score=196.31 Aligned_cols=180 Identities=14% Similarity=0.127 Sum_probs=129.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++.|++.. .++++ +||++.+|++++|+||||||||||+|+|+|+ ++|.+|+|.++|..
T Consensus 257 ~l~~~~~~~~------~~l~~--isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~------------~~p~~G~i~~~g~~ 316 (501)
T PRK11288 257 RLRLDGLKGP------GLREP--ISFSVRAGEIVGLFGLVGAGRSELMKLLYGA------------TRRTAGQVYLDGKP 316 (501)
T ss_pred EEEEeccccC------Ccccc--eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC------------CcCCCceEEECCEE
Confidence 5666677521 25554 9999999999999999999999999999999 89999999999974
Q ss_pred eeeecc-CcCCCCCCCCcccce-EEEecccCccCCHHHHHH-----------------HHHHHH----------HHHHHH
Q 013511 179 AATPIE-LPIDPVEGIPLEMPL-VYFFGHATPSNNVELYKV-----------------LVKELA----------QMLERQ 229 (441)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~-~~~~g~~tv~en~~~~~~-----------------~~~~l~----------~~~~~~ 229 (441)
...... .......++.++.+. ..+++..|+.+|+.+... .+.++. +.....
T Consensus 317 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 396 (501)
T PRK11288 317 IDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN 396 (501)
T ss_pred CCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc
Confidence 321100 001112223333321 136677888888654210 111111 223356
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
||+||+||+.+ +|+|| |++||+..++.+.++|+++.. .+||+++|| +....+.||++.++
T Consensus 397 LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd-----~~~~~~~~d~i~~l-- 469 (501)
T PRK11288 397 LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSD-----LPEVLGVADRIVVM-- 469 (501)
T ss_pred CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHhhCCEEEEE--
Confidence 99999998775 99999 999999999999999988754 399999999 88888889999998
Q ss_pred cCCCCeeeCC
Q 013511 297 QKSGGVVSRN 306 (441)
Q Consensus 297 ~~~g~vv~~~ 306 (441)
++|.++..+
T Consensus 470 -~~g~i~~~~ 478 (501)
T PRK11288 470 -REGRIAGEL 478 (501)
T ss_pred -ECCEEEEEE
Confidence 788877554
No 335
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.79 E-value=7.2e-21 Score=199.60 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=127.8
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC-CCCcccC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI-GQGAITI 174 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp-~~G~i~~ 174 (441)
..+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ ..+ .+|+|.+
T Consensus 257 ~~~~l~~~~l~~~~~~~--~il~~--vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~------------~~~~~~G~i~~ 320 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDR--PILHN--LSWQVNPGEHWQIVGPNGAGKSTLLSLITGD------------HPQGYSNDLTL 320 (490)
T ss_pred CCceEEEeceEEEECCe--eEEee--ceEEEcCCCEEEEECCCCCCHHHHHHHHcCC------------CCcccCCeEEE
Confidence 45689999999999764 36765 9999999999999999999999999999998 665 6899999
Q ss_pred CceeeeeeccCcCCCCCCCCcccceEEE-ec-ccCccCCHHHH---------------HHHHH---------H-HHHHHH
Q 013511 175 PGCIAATPIELPIDPVEGIPLEMPLVYF-FG-HATPSNNVELY---------------KVLVK---------E-LAQMLE 227 (441)
Q Consensus 175 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~~tv~en~~~~---------------~~~~~---------~-l~~~~~ 227 (441)
+|...... ......+..+.+.++...+ +. ..++.+++.+. ...+. . ..+...
T Consensus 321 ~g~~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 399 (490)
T PRK10938 321 FGRRRGSG-ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF 399 (490)
T ss_pred ecccCCCC-CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch
Confidence 99642110 0000011223332222111 11 12333332110 00111 1 223445
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhc-CCCCeE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLK-NRPNVD 292 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~-~~~~v~ 292 (441)
..||+||+||+++ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +..+.+ .++++.
T Consensus 400 ~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd-----~~~~~~~~~d~v~ 474 (490)
T PRK10938 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHH-----AEDAPACITHRLE 474 (490)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecc-----hhhhhhhhheeEE
Confidence 7899999999875 99999 999999999999999998853 268999999 666655 478988
Q ss_pred EEEecCCCCeeeC
Q 013511 293 VVKLQKSGGVVSR 305 (441)
Q Consensus 293 vl~l~~~g~vv~~ 305 (441)
++ ++|.++..
T Consensus 475 ~l---~~G~i~~~ 484 (490)
T PRK10938 475 FV---PDGDIYRY 484 (490)
T ss_pred Ee---cCCceEEe
Confidence 88 88887653
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.6e-21 Score=199.47 Aligned_cols=181 Identities=12% Similarity=0.149 Sum_probs=127.7
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.++++++|+++.+ . .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|
T Consensus 248 ~~~i~~~~l~~~~--~--~~l~~--vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl------------~~p~~G~i~~~g 309 (491)
T PRK10982 248 EVILEVRNLTSLR--Q--PSIRD--VSFDLHKGEILGIAGLVGAKRTDIVETLFGI------------REKSAGTITLHG 309 (491)
T ss_pred CcEEEEeCccccc--C--cccce--eeEEEeCCcEEEEecCCCCCHHHHHHHHcCC------------CcCCccEEEECC
Confidence 4578899998863 1 36665 9999999999999999999999999999999 899999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccce---EEEecccCccCC-----HHHHH----------------HHHHH------HHHHH
Q 013511 177 CIAATPIELPIDPVEGIPLEMPL---VYFFGHATPSNN-----VELYK----------------VLVKE------LAQML 226 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~tv~en-----~~~~~----------------~~~~~------l~~~~ 226 (441)
.......... ....++.+.++. ..+|...++.+| +.++. ..++. ..+..
T Consensus 310 ~~i~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 310 KKINNHNANE-AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred EECCCCCHHH-HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc
Confidence 6542111000 001223222221 123444444332 22110 00111 11334
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
...||+||+||+.+ +|+|| |+++|+..++.+.++++++.. .+||+++|+ +....+.||++.+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd-----~~~~~~~~d~v~~ 463 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE-----MPELLGITDRILV 463 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCC-----hHHHHhhCCEEEE
Confidence 45799999998775 99999 999999999999999988743 399999999 7777788999988
Q ss_pred EEecCCCCeee
Q 013511 294 VKLQKSGGVVS 304 (441)
Q Consensus 294 l~l~~~g~vv~ 304 (441)
+ ++|.++.
T Consensus 464 l---~~g~i~~ 471 (491)
T PRK10982 464 M---SNGLVAG 471 (491)
T ss_pred E---ECCEEEE
Confidence 8 7888774
No 337
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.79 E-value=1.1e-20 Score=200.85 Aligned_cols=182 Identities=12% Similarity=0.131 Sum_probs=127.8
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|++.. .++++ +|+++++|++++|+||||||||||+++|+|+ .+|.+|+|.++|..
T Consensus 322 ~i~~~~v~f~y~~~~-~~l~~--i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~------------~~~~~G~i~~~g~~ 386 (547)
T PRK10522 322 TLELRNVTFAYQDNG-FSVGP--INLTIKRGELLFLIGGNGSGKSTLAMLLTGL------------YQPQSGEILLDGKP 386 (547)
T ss_pred eEEEEEEEEEeCCCC-eEEec--ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCeEEEECCEE
Confidence 366778888886432 46765 9999999999999999999999999999999 99999999999976
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCH-HHHHH----HHHHH--HHHH--------HHHhccCccceeee---
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNV-ELYKV----LVKEL--AQML--------ERQFNGNAESRAAG--- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~-~~~~~----~~~~l--~~~~--------~~~ls~g~~~r~~~--- 240 (441)
........++ ..+.+.++..++|. .|+.+|- ..-.. .++.+ .... ...||+||+||+++
T Consensus 387 ~~~~~~~~~~--~~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARa 463 (547)
T PRK10522 387 VTAEQPEDYR--KLFSAVFTDFHLFD-QLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLA 463 (547)
T ss_pred CCCCCHHHHh--hheEEEecChhHHH-HhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHH
Confidence 5322111222 23444444445554 3566651 11111 11111 0111 13699999998775
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHc-C--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTF-K--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~-~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| ++++|+...+.+.+.+.+. + ..++|+++|+ +.. .+.+|++.++ ++|++++.+.
T Consensus 464 l~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~-----~~~-~~~~d~i~~l---~~G~i~e~~~ 532 (547)
T PRK10522 464 LAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD-----DHY-FIHADRLLEM---RNGQLSELTG 532 (547)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEec-----hHH-HHhCCEEEEE---ECCEEEEecC
Confidence 99999 9999999988887777543 2 3489999998 433 3568999888 8899887754
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.79 E-value=2.1e-20 Score=217.33 Aligned_cols=185 Identities=16% Similarity=0.188 Sum_probs=139.1
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|++++|......++++ +||++++|++++|+|++|||||||+++|+|+ .+ .+|+|.++|.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~--is~~I~~GekvaIvGrSGsGKSTLl~lL~rl------------~~-~~G~I~IdG~d 1281 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQD--LSFSVEGGQRVGLLGRTGSGKSTLLSALLRL------------LS-TEGEIQIDGVS 1281 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeec--cEEEEcCCCEEEEECCCCCCHHHHHHHHhhh------------cC-CCcEEEECCEE
Confidence 366788888886543467876 9999999999999999999999999999999 76 78999999987
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHH---------HHHHH-----------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKE---------LAQML-----------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~---------l~~~~-----------~~~ls~g~ 234 (441)
+.......++.. +.+.+|...+|. -|+++|+..+.. .+.+ ..... ...||+||
T Consensus 1282 i~~i~~~~lR~~--is~IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQ 1358 (1490)
T TIGR01271 1282 WNSVTLQTWRKA--FGVIPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGH 1358 (1490)
T ss_pred cccCCHHHHHhc--eEEEeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHH
Confidence 654333333333 444445556666 499999975421 1110 11111 01489999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +|+|| |+++|......+.+.|++... .|||+++|. +... ..+|+|.++ ++|.+
T Consensus 1359 rQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHR-----l~ti-~~~DrIlvL---~~G~i 1429 (1490)
T TIGR01271 1359 KQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR-----VEAL-LECQQFLVI---EGSSV 1429 (1490)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC-----HHHH-HhCCEEEEE---ECCEE
Confidence 998765 99999 999999999999999988654 499999999 6555 468999999 89999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
++.+.+..
T Consensus 1430 vE~g~p~~ 1437 (1490)
T TIGR01271 1430 KQYDSIQK 1437 (1490)
T ss_pred EEeCCHHH
Confidence 99887543
No 339
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.78 E-value=7.3e-20 Score=197.40 Aligned_cols=182 Identities=16% Similarity=0.196 Sum_probs=124.7
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
+|+++.|+++.|++. .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|++|+|.++|.
T Consensus 2 ~~l~i~~ls~~~~~~--~il~~--is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~------------~~p~~G~I~~~~~ 65 (635)
T PRK11147 2 SLISIHGAWLSFSDA--PLLDN--AELHIEDNERVCLVGRNGAGKSTLMKILNGE------------VLLDDGRIIYEQD 65 (635)
T ss_pred cEEEEeeEEEEeCCc--eeEeC--cEEEECCCCEEEEECCCCCCHHHHHHHHcCC------------CCCCCeEEEeCCC
Confidence 468889999999764 46665 9999999999999999999999999999999 9999999999874
Q ss_pred eeeeecc-CcCCCCCCCCcccceEE---Ee-------------cccCccCCHHHHHHH---------------HHHHH--
Q 013511 178 IAATPIE-LPIDPVEGIPLEMPLVY---FF-------------GHATPSNNVELYKVL---------------VKELA-- 223 (441)
Q Consensus 178 ~~~~~~~-~~~~~~~~~~~~~~~~~---~~-------------g~~tv~en~~~~~~~---------------~~~l~-- 223 (441)
....... .+.....+..++..... ++ ...+..+|+..+... +..+.
T Consensus 66 ~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 66 LIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred CEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 3211111 11111111111110000 00 000112233222111 11111
Q ss_pred -----HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcC
Q 013511 224 -----QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKN 287 (441)
Q Consensus 224 -----~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~ 287 (441)
+.....||+|++||+++ ||+|| |++||+.+++.+.+++++++ .+||+++|+ .......
T Consensus 146 lgl~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd-----~~~l~~~ 219 (635)
T PRK11147 146 LGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHD-----RSFIRNM 219 (635)
T ss_pred CCCCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCC-----HHHHHHh
Confidence 22346799999998876 99999 99999999999999999986 489999999 5555567
Q ss_pred CCCeEEEEecCCCCeee
Q 013511 288 RPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 288 ~~~v~vl~l~~~g~vv~ 304 (441)
|+++.++ ++|.++.
T Consensus 220 ~d~i~~L---~~G~i~~ 233 (635)
T PRK11147 220 ATRIVDL---DRGKLVS 233 (635)
T ss_pred cCeEEEE---ECCEEEE
Confidence 8998888 7787764
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.78 E-value=3.5e-20 Score=214.32 Aligned_cols=173 Identities=15% Similarity=0.212 Sum_probs=128.4
Q ss_pred chhHHHHHHHHhhhh-hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC-Cc
Q 013511 99 MVSYVNVNAVLEGRR-NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI-PG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~-~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~-~G 176 (441)
.++++|+++.|+... ..++++ +||++++|++++|+||||||||||+++|+|+ ++|.+|+|.+ +|
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~--isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl------------~~p~~G~I~i~~g 447 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKD--LNFTLTEGKTYAFVGESGCGKSTILKLIERL------------YDPTEGDIIINDS 447 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceecc--ceEEEcCCCEEEEECCCCCCHHHHHHHHHHh------------ccCCCCeEEEeCC
Confidence 367789999997532 247766 9999999999999999999999999999999 9999999999 45
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH---------------------------------------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV--------------------------------------- 217 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~--------------------------------------- 217 (441)
..+.......+ +..+.+.+|...+|. .|+++|+.++..
T Consensus 448 ~~i~~~~~~~l--r~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 448 HNLKDINLKWW--RSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred cchhhCCHHHH--HHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 54322111112 233444455556675 599999987420
Q ss_pred -----------------------HHHH---------HHHH-----------HHHHhccCccceeee----------EEEe
Q 013511 218 -----------------------LVKE---------LAQM-----------LERQFNGNAESRAAG----------MVIN 244 (441)
Q Consensus 218 -----------------------~~~~---------l~~~-----------~~~~ls~g~~~r~~~----------lIlD 244 (441)
.+.+ +... ....||+||+||+++ ||+|
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLD 604 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILD 604 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 0000 0000 113599999999876 9999
Q ss_pred C-CCCCCchhHHHHHHHHHHcC---CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 245 T-MGWIEGVGYELLLHAIDTFK---ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 245 E-~~~lD~~~~~~l~~li~~~~---~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
| |++||+...+.+.+.++++. ..++|+++|+ +... +.||++.++
T Consensus 605 EpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHr-----ls~i-~~aD~Iivl 652 (1466)
T PTZ00265 605 EATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR-----LSTI-RYANTIFVL 652 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCC-----HHHH-HhCCEEEEE
Confidence 9 99999999999999999884 3499999999 6554 579999888
No 341
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.78 E-value=3e-20 Score=197.67 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=126.6
Q ss_pred chhHHHHHHHHhhh---hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 99 MVSYVNVNAVLEGR---RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~---~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
.++++|+++.|++. +..++++ +||++++|++++|+||||||||||+++|+|+ .+|++|+|.++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~--vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~------------~~p~~G~i~~~ 402 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGP--IDLRIAQGDIVFIVGENGCGKSTLAKLFCGL------------YIPQEGEILLD 402 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceecc--ceEEEcCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCCcEEEEC
Confidence 36677888888653 2246765 9999999999999999999999999999999 99999999999
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHH--HHHHHHHHHHH---------H------HHHhccCcccee
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVEL--YKVLVKELAQM---------L------ERQFNGNAESRA 238 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~--~~~~~~~l~~~---------~------~~~ls~g~~~r~ 238 (441)
|..+.......++. .+.+.++..++|. .|+.+|..- ....+.+..+. . ...||+||+||+
T Consensus 403 g~~i~~~~~~~~~~--~i~~v~q~~~lf~-~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl 479 (555)
T TIGR01194 403 GAAVSADSRDDYRD--LFSAIFADFHLFD-DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL 479 (555)
T ss_pred CEECCCCCHHHHHh--hCcEEccChhhhh-hhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence 97653322222222 2344444445554 366666421 11111111111 1 135999999998
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHH-HHc--CCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAI-DTF--KANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li-~~~--~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
++ +|+|| ++++|+...+.+.+.+ +.+ +..++|+++|+ +.. .+.+|++.++ ++|++++
T Consensus 480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~-----~~~-~~~~d~i~~l---~~G~i~~ 550 (555)
T TIGR01194 480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD-----DQY-FELADQIIKL---AAGCIVK 550 (555)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc-----HHH-HHhCCEEEEE---ECCEEEE
Confidence 76 99999 9999999988887644 433 23599999998 543 3578999998 7888765
Q ss_pred C
Q 013511 305 R 305 (441)
Q Consensus 305 ~ 305 (441)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 3
No 342
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.78 E-value=7.3e-20 Score=178.39 Aligned_cols=233 Identities=16% Similarity=0.181 Sum_probs=165.2
Q ss_pred CCCchhHHHHHHHHhhh--hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 96 ETPMVSYVNVNAVLEGR--RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~--~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
+.+.+++.|++..|... ...++++ +||++.+||.++++|.+|||||-.++.+++++.+.+ .--.+|+|.
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~--isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~-------~~~~sg~i~ 73 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKG--ISFDIEAGETLALVGESGSGKSVTALSILGLLPSPA-------AAHPSGSIL 73 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeecc--ceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCc-------ccCccceeE
Confidence 35677888888877532 2345655 999999999999999999999999999999832111 111368999
Q ss_pred CCceeeeeeccCcCC----CCCCCCcccceEEEecccCccCCHHHHHHH------------------------HHHHHHH
Q 013511 174 IPGCIAATPIELPID----PVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------------VKELAQM 225 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------------~~~l~~~ 225 (441)
++|........+.++ .+.++.||.|...+-+-.|+...+.-..+. -+...+.
T Consensus 74 f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~ 153 (534)
T COG4172 74 FDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDA 153 (534)
T ss_pred EcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhh
Confidence 999877655443332 245678888887777766665544322211 0122356
Q ss_pred HHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCe
Q 013511 226 LERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNV 291 (441)
Q Consensus 226 ~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v 291 (441)
++.+|||||+||+.+ ||.|| |..||..-+..+++++++++.. .++++||| |.-.-+.+|+|
T Consensus 154 yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHD-----L~iVr~~ADrV 228 (534)
T COG4172 154 YPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHD-----LGIVRKFADRV 228 (534)
T ss_pred CCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEecc-----HHHHHHhhhhE
Confidence 778899999999876 99999 9999998899999999999765 88999999 88777889999
Q ss_pred EEEEecCCCCeeeCChHH--HHHHHHHHHHHHhcCCCC----CCCc-eeEEeecCceEEEE
Q 013511 292 DVVKLQKSGGVVSRNSKV--RQKARSYRIREYFYGLTN----DLSP-HANVANFSDFLVYR 345 (441)
Q Consensus 292 ~vl~l~~~g~vv~~~~~~--~~~~r~~~~~~yf~g~~~----~l~p-~~~~~~~~~l~~~~ 345 (441)
.|| ..|.+++.+... ....++...+......+. ++.+ ....+.-++++++.
T Consensus 229 ~VM---~~G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f 286 (534)
T COG4172 229 YVM---QHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWF 286 (534)
T ss_pred EEE---eccEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEE
Confidence 999 999999988633 233344444555543322 2222 12345667787765
No 343
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.78 E-value=1.4e-19 Score=190.57 Aligned_cols=180 Identities=13% Similarity=0.180 Sum_probs=130.8
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.++|
T Consensus 266 ~~~l~~~~l~~-------~~l~~--isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl------------~~p~~G~i~~~g 324 (510)
T PRK15439 266 APVLTVEDLTG-------EGFRN--ISLEVRAGEILGLAGVVGAGRTELAETLYGL------------RPARGGRIMLNG 324 (510)
T ss_pred CceEEEeCCCC-------CCccc--eeEEEcCCcEEEEECCCCCCHHHHHHHHcCC------------CCCCCcEEEECC
Confidence 45888888873 13554 9999999999999999999999999999999 999999999999
Q ss_pred eeeeeeccCcCCCCCCCCcccce---EEEecccCccCCHHHHH----------H----HHHHH----------HHHHHHH
Q 013511 177 CIAATPIELPIDPVEGIPLEMPL---VYFFGHATPSNNVELYK----------V----LVKEL----------AQMLERQ 229 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~tv~en~~~~~----------~----~~~~l----------~~~~~~~ 229 (441)
.......... ..+.++.+.++. ..+++..|+.+|+.... . .+.++ .+.....
T Consensus 325 ~~i~~~~~~~-~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 403 (510)
T PRK15439 325 KEINALSTAQ-RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART 403 (510)
T ss_pred EECCCCCHHH-HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcccc
Confidence 7442110000 011233333332 23566777777763210 0 01111 1233456
Q ss_pred hccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 230 FNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 230 ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
||+||+||+.+ ||+|| +++||+..++.+.++|+++.. .+||+++|+ +..+.+.||++.++
T Consensus 404 LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd-----~~~i~~~~d~i~~l-- 476 (510)
T PRK15439 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD-----LEEIEQMADRVLVM-- 476 (510)
T ss_pred CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCC-----HHHHHHhCCEEEEE--
Confidence 99999998775 99999 999999999999999998743 489999999 77777889999998
Q ss_pred cCCCCeeeCC
Q 013511 297 QKSGGVVSRN 306 (441)
Q Consensus 297 ~~~g~vv~~~ 306 (441)
++|.++..+
T Consensus 477 -~~G~i~~~~ 485 (510)
T PRK15439 477 -HQGEISGAL 485 (510)
T ss_pred -ECCEEEEEE
Confidence 788887544
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=4.3e-20 Score=198.93 Aligned_cols=181 Identities=13% Similarity=0.141 Sum_probs=122.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
|+++.|+++.|+++ .++++ +||++.+|++++|+||||||||||+|+|+|. +.|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g~~--~~l~~--vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~------------~~pd~G~I~~~~~~ 64 (638)
T PRK10636 1 MIVFSSLQIRRGVR--VLLDN--ATATINPGQKVGLVGKNGCGKSTLLALLKNE------------ISADGGSYTFPGNW 64 (638)
T ss_pred CEEEEEEEEEeCCc--eeecC--cEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEecCCC
Confidence 46678899999875 46665 9999999999999999999999999999999 99999999998853
Q ss_pred eeeeccC-c-CCCCCCCCcccceEEEecccCcc-------CCHHHHH---------------HHHH----------HHHH
Q 013511 179 AATPIEL-P-IDPVEGIPLEMPLVYFFGHATPS-------NNVELYK---------------VLVK----------ELAQ 224 (441)
Q Consensus 179 ~~~~~~~-~-~~~~~~~~~~~~~~~~~g~~tv~-------en~~~~~---------------~~~~----------~l~~ 224 (441)
....... . ......+.+..+....+..++.. ++...+. ..+. ...+
T Consensus 65 ~i~~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~ 144 (638)
T PRK10636 65 QLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLE 144 (638)
T ss_pred EEEEEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhc
Confidence 2111111 1 10011111111100111111110 0000000 0111 1123
Q ss_pred HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 225 MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 225 ~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
.....||+|++||+.+ ||+|| |++||+.+.+.+.+.+++++ .+||+++|+ .....+.|+++.+
T Consensus 145 ~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~-~tviivsHd-----~~~l~~~~d~i~~ 218 (638)
T PRK10636 145 RPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ-GTLILISHD-----RDFLDPIVDKIIH 218 (638)
T ss_pred CchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCC-CeEEEEeCC-----HHHHHHhcCEEEE
Confidence 3456799999998775 99999 99999999999999999985 488899999 6666667899888
Q ss_pred EEecCCCCeee
Q 013511 294 VKLQKSGGVVS 304 (441)
Q Consensus 294 l~l~~~g~vv~ 304 (441)
+ ++|.++.
T Consensus 219 L---~~G~i~~ 226 (638)
T PRK10636 219 I---EQQSLFE 226 (638)
T ss_pred E---eCCEEEE
Confidence 8 7787753
No 345
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.77 E-value=7.6e-20 Score=183.00 Aligned_cols=181 Identities=21% Similarity=0.257 Sum_probs=134.7
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeee
Q 013511 101 SYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAA 180 (441)
Q Consensus 101 ~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~ 180 (441)
.++++.+.=.+.+..++++ +||++.+|+.++||||+|||||||.|+|.|. ..|..|.|.+||....
T Consensus 336 ~Ve~l~~~PPg~~~pil~~--isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~------------w~p~~G~VRLDga~l~ 401 (580)
T COG4618 336 SVERLTAAPPGQKKPILKG--ISFALQAGEALGIIGPSGSGKSTLARLLVGI------------WPPTSGSVRLDGADLR 401 (580)
T ss_pred eEeeeeecCCCCCCcceec--ceeEecCCceEEEECCCCccHHHHHHHHHcc------------cccCCCcEEecchhhh
Confidence 3344433323333345654 9999999999999999999999999999999 9999999999997664
Q ss_pred eeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------HH--------HHHH----HHH-------HHhccCcc
Q 013511 181 TPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------VK--------ELAQ----MLE-------RQFNGNAE 235 (441)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------~~--------~l~~----~~~-------~~ls~g~~ 235 (441)
.+..+.+- +.++|.+|...+|.. |+.||+..+... ++ ++.- .|. ..||+||+
T Consensus 402 qWd~e~lG--~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 402 QWDREQLG--RHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred cCCHHHhc--cccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 44433333 345666777777775 899999876521 11 1111 111 23999999
Q ss_pred ceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 236 SRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 236 ~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||+.+ +++|| .+.||..+..-+.+.|.+.+.. ++|+++|. ...+..+|++.++ ++|.+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHR------Ps~L~~~Dkilvl---~~G~~ 549 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR------PSALASVDKILVL---QDGRI 549 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecC------HHHHhhcceeeee---cCChH
Confidence 99876 99999 7889999999999999888765 88889998 3344577999999 88888
Q ss_pred eeCCh
Q 013511 303 VSRNS 307 (441)
Q Consensus 303 v~~~~ 307 (441)
...++
T Consensus 550 ~~FG~ 554 (580)
T COG4618 550 AAFGP 554 (580)
T ss_pred HhcCC
Confidence 77765
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.3e-20 Score=164.36 Aligned_cols=137 Identities=23% Similarity=0.231 Sum_probs=98.7
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeec
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPI 183 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~ 183 (441)
|+++.|.+. .++++ +++++.+|++++|+|+||||||||+++|+|. ++|.+|+++++|.......
T Consensus 4 ~~~~~~~~~--~~l~~--~~~~i~~g~~~~i~G~nGsGKStll~~l~g~------------~~~~~G~i~~~~~~~~~~~ 67 (157)
T cd00267 4 NLSFRYGGR--TALDN--VSLTLKAGEIVALVGPNGSGKSTLLRAIAGL------------LKPTSGEILIDGKDIAKLP 67 (157)
T ss_pred EEEEEeCCe--eeEee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCccEEEECCEEcccCC
Confidence 344444433 35554 8999999999999999999999999999999 8999999999996432110
Q ss_pred cCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCcccee----------eeEEEeC-CCCCCch
Q 013511 184 ELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRA----------AGMVINT-MGWIEGV 252 (441)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~----------~~lIlDE-~~~lD~~ 252 (441)
... ....+.+.++ ||+|+++|+ .++++|| ++++|..
T Consensus 68 ~~~--~~~~i~~~~q-------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~ 114 (157)
T cd00267 68 LEE--LRRRIGYVPQ-------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA 114 (157)
T ss_pred HHH--HHhceEEEee-------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 100 0111111111 444444443 4599999 9999999
Q ss_pred hHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 253 GYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 253 ~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.+..+.++++++.. .++++++|+ +......|+++.++
T Consensus 115 ~~~~l~~~l~~~~~~~~tii~~sh~-----~~~~~~~~d~i~~l 153 (157)
T cd00267 115 SRERLLELLRELAEEGRTVIIVTHD-----PELAELAADRVIVL 153 (157)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 99999999988754 389999999 66666667888777
No 347
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.77 E-value=1.9e-19 Score=193.55 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=127.3
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccCCceeeeeeccCcCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITIPGCIAATPIELPIDPVE 191 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~~G~~~~~~~~~~~~~~~ 191 (441)
.++++ +|+++++|++++|+||||||||||+++|+|. .+++ +|+|.++|..... ... +.
T Consensus 39 ~iL~~--vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~------------~~~~~~~~G~i~~~g~~~~~---~~~--~~ 99 (617)
T TIGR00955 39 HLLKN--VSGVAKPGELLAVMGSSGAGKTTLMNALAFR------------SPKGVKGSGSVLLNGMPIDA---KEM--RA 99 (617)
T ss_pred ccccC--CEEEEeCCeEEEEECCCCCCHHHHHHHHhCC------------CCCCCcceeEEEECCEECCH---HHH--hh
Confidence 46665 9999999999999999999999999999998 7775 7999999975421 112 22
Q ss_pred CCCcccceEEEecccCccCCHHHHHHH--------------HHHHHH---------HHH------HHhccCccceeee--
Q 013511 192 GIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQ---------MLE------RQFNGNAESRAAG-- 240 (441)
Q Consensus 192 ~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~---------~~~------~~ls~g~~~r~~~-- 240 (441)
.+.+..+...+++.+|++||+.+.... +.++.+ ... ..+|+||+||+++
T Consensus 100 ~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~ 179 (617)
T TIGR00955 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFAS 179 (617)
T ss_pred hceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHH
Confidence 344445555788999999999875421 111111 111 2499999999876
Q ss_pred --------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHH-HHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 --------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLR-DVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 --------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~-~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+++|| +++||......+.+.++++.. .+||+++|+ .. +..+.+|++.++ ++|+++..++.
T Consensus 180 aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq-----~~~~i~~~~D~i~ll---~~G~~v~~G~~ 251 (617)
T TIGR00955 180 ELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQ-----PSSELFELFDKIILM---AEGRVAYLGSP 251 (617)
T ss_pred HHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCC-----CCHHHHHHhceEEEe---eCCeEEEECCH
Confidence 99999 999999999999999998853 388888898 42 445678999888 88999988864
No 348
>PRK13409 putative ATPase RIL; Provisional
Probab=99.77 E-value=8e-20 Score=194.50 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=119.0
Q ss_pred HHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc----------
Q 013511 104 NVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT---------- 173 (441)
Q Consensus 104 nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~---------- 173 (441)
+++++|++. ..++.+ ++ .+.+|++++|+||||||||||+|+|+|+ +.|+.|+|.
T Consensus 78 ~~~~~yg~~-~~~L~~--l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~------------l~p~~G~i~~~~~~~~~~~ 141 (590)
T PRK13409 78 EPVHRYGVN-GFKLYG--LP-IPKEGKVTGILGPNGIGKTTAVKILSGE------------LIPNLGDYEEEPSWDEVLK 141 (590)
T ss_pred CceEEecCC-ceeEec--CC-cCCCCCEEEEECCCCCCHHHHHHHHhCC------------ccCCCccccCCCcHHHHHH
Confidence 477788753 246765 88 7999999999999999999999999999 999999997
Q ss_pred -CCceeeeeeccCcCCCCCCCCcccceEEEec---ccCccCCHHHHHH--HHHH---------HHHHHHHHhccCcccee
Q 013511 174 -IPGCIAATPIELPIDPVEGIPLEMPLVYFFG---HATPSNNVELYKV--LVKE---------LAQMLERQFNGNAESRA 238 (441)
Q Consensus 174 -~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~tv~en~~~~~~--~~~~---------l~~~~~~~ls~g~~~r~ 238 (441)
+.|................+.+..+....++ ..|+.+++..... .+.+ ..++....||+||+||+
T Consensus 142 ~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv 221 (590)
T PRK13409 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRV 221 (590)
T ss_pred HhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 7776542211100000111111111111111 1277777654321 1111 23444567999999987
Q ss_pred ee----------EEEeC-CCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 239 AG----------MVINT-MGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 239 ~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
++ +|+|| +++||+..++.+.++|+++.. .+||+++|+ +......+|++.++
T Consensus 222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd-----~~~l~~~~D~v~vl 284 (590)
T PRK13409 222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHD-----LAVLDYLADNVHIA 284 (590)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHhCCEEEEE
Confidence 76 99999 999999999999999998843 489999999 77777789999887
No 349
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-19 Score=177.45 Aligned_cols=184 Identities=21% Similarity=0.345 Sum_probs=141.6
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+.+.|+++.|+..+ ..+++ +||++..|+.++++|++|+||||++|+|..+ +|+.+|.|+++|+++
T Consensus 263 v~F~~V~F~y~~~r-~iL~~--isf~i~~g~tvAiVg~SG~gKsTI~rllfRF------------yD~~sG~I~id~qdi 327 (497)
T COG5265 263 VAFINVSFAYDPRR-PILNG--ISFTIPLGKTVAIVGESGAGKSTILRLLFRF------------YDVNSGSITIDGQDI 327 (497)
T ss_pred EEEEEEEeeccccc-hhhcC--ccccccCccEEEEEeCCCCcHHHHHHHHHHH------------hCCcCceEEEcchhH
Confidence 44678899998876 45654 9999999999999999999999999999999 999999999999887
Q ss_pred eeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH------------------HHHHHHHH-------HHHhccCc
Q 013511 180 ATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL------------------VKELAQML-------ERQFNGNA 234 (441)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~------------------~~~l~~~~-------~~~ls~g~ 234 (441)
.......++...++ .+++.-+|.+ |...|+.+.... +..+.+.+ .-++|+|+
T Consensus 328 r~vtq~slR~aIg~--VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 328 RDVTQQSLRRAIGI--VPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHhHHHHHHHHhCc--Ccccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 65555444443444 4555556664 666677664321 11111111 12489999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+||+++ +++|| |+.||-...+.+...+++...+ +-+++.|. |.... .+|.+.|+ ++|.+
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahr-----lsti~-~adeiivl---~~g~i 475 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHR-----LSTII-DADEIIVL---DNGRI 475 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeeh-----hhhcc-CCceEEEe---eCCEE
Confidence 999876 99999 9999998888999999888765 77788898 76654 67999999 99999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
+++++...
T Consensus 476 ~erg~h~~ 483 (497)
T COG5265 476 VERGTHEE 483 (497)
T ss_pred EecCcHHH
Confidence 99998554
No 350
>PLN03073 ABC transporter F family; Provisional
Probab=99.75 E-value=2.3e-19 Score=194.40 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=122.1
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+++++.|+++.|++.+ .++++ +||++.+|++++|+||||||||||+|+|+|+ +.|.+|+|.+.+
T Consensus 506 ~~~L~~~~ls~~y~~~~-~il~~--vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl------------l~p~~G~I~~~~ 570 (718)
T PLN03073 506 PPIISFSDASFGYPGGP-LLFKN--LNFGIDLDSRIAMVGPNGIGKSTILKLISGE------------LQPSSGTVFRSA 570 (718)
T ss_pred CceEEEEeeEEEeCCCC-eeEec--cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CCCCCceEEECC
Confidence 36899999999996432 36665 9999999999999999999999999999999 999999998765
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH-------------HHHHH------HHHHHHHHHhccCccce
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY-------------KVLVK------ELAQMLERQFNGNAESR 237 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~-------------~~~~~------~l~~~~~~~ls~g~~~r 237 (441)
..... +.++.+ +..+++.+|..++ ...+. .+.+.....||+||+||
T Consensus 571 ~~~ig-----------yv~Q~~----~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 571 KVRMA-----------VFSQHH----VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred ceeEE-----------EEeccc----cccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 32111 111110 1112222222111 11111 12233446799999998
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ ||+|| |++||+...+.+.+.+.+++ .+||+++|+ +......|+++.++ .+|.++
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~-gtvIivSHd-----~~~i~~~~drv~~l---~~G~i~ 703 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQ-GGVLMVSHD-----EHLISGSVDELWVV---SEGKVT 703 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcC-CEEEEEECC-----HHHHHHhCCEEEEE---ECCEEE
Confidence 876 99999 99999999999999998875 489999999 66666779999888 788876
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.75 E-value=8e-19 Score=182.84 Aligned_cols=150 Identities=18% Similarity=0.193 Sum_probs=107.8
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+.|+.+.|+++.|+.+ ..+++ +++++.+|++++|||+||||||||+|+|+|. +.|++|+|..++
T Consensus 1 m~~i~~~~ls~~~g~~--~l~~~--~~l~~~~G~riGLvG~NGaGKSTLLkilaG~------------~~~~~G~i~~~~ 64 (530)
T COG0488 1 MSMITLENLSLAYGDR--PLLEN--VSLTLNPGERIGLVGRNGAGKSTLLKILAGE------------LEPDSGEVTRPK 64 (530)
T ss_pred CceEEEeeeEEeeCCc--eeecC--CcceeCCCCEEEEECCCCCCHHHHHHHHcCC------------CcCCCCeEeecC
Confidence 3577889999999776 35554 9999999999999999999999999999999 999999998877
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------------------------------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------------------------------- 218 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------------------------------- 218 (441)
..-..... |...+....|+.+.+......
T Consensus 65 ~~~v~~l~-------------Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (530)
T COG0488 65 GLRVGYLS-------------QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTL 131 (530)
T ss_pred CceEEEeC-------------CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccch
Confidence 32111111 111222222333322111000
Q ss_pred ---HHHHH--------HHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCch
Q 013511 219 ---VKELA--------QMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEK 276 (441)
Q Consensus 219 ---~~~l~--------~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~ 276 (441)
+..+. +.....||||++.|+.+ |+||| |+.||-.+...|.+.++.++. ++|+++||+
T Consensus 132 e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR 210 (530)
T COG0488 132 EARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDR 210 (530)
T ss_pred HHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 00000 23345699999977664 99999 999999999999999999887 888899994
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.75 E-value=9.2e-20 Score=210.47 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=139.6
Q ss_pred chhHHHHHHHHhh--hhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc---CCCCccc
Q 013511 99 MVSYVNVNAVLEG--RRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD---IGQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~~~--~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld---p~~G~i~ 173 (441)
+++++|+++.|+. .+..++++ +|+++++|++++|+||||||||||+++|+|+ .+ |.+|+|.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~--vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~------------~~~g~~~~G~I~ 824 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNN--VDGWVKPGTLTALMGASGAGKTTLLNVLAER------------VTTGVITGGDRL 824 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeC--CEEEEECCEEEEEECCCCCCHHHHHHHHhCC------------CCCCCcceeEEE
Confidence 5678888887742 12356766 9999999999999999999999999999998 76 6789999
Q ss_pred CCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH--------------HHHHHH---------HHHH--
Q 013511 174 IPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELAQ---------MLER-- 228 (441)
Q Consensus 174 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~~---------~~~~-- 228 (441)
++|.... .... ..+.+..+...+++.+|++||+.+.... +.++.+ ....
T Consensus 825 i~G~~~~----~~~~--~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~ 898 (1394)
T TIGR00956 825 VNGRPLD----SSFQ--RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP 898 (1394)
T ss_pred ECCEECC----hhhh--cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC
Confidence 9997542 1222 2233444434578889999999875321 111111 1111
Q ss_pred --HhccCccceee-----------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHH-HhcCCCCe
Q 013511 229 --QFNGNAESRAA-----------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRD-VLKNRPNV 291 (441)
Q Consensus 229 --~ls~g~~~r~~-----------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~-~~~~~~~v 291 (441)
.||+||+||++ ++++|| +++||......+.++++++.. .+||+++|+ +.. ..+.+|++
T Consensus 899 ~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~-----~~~~~~~~~D~v 973 (1394)
T TIGR00956 899 GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQ-----PSAILFEEFDRL 973 (1394)
T ss_pred CCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-----CCHHHHHhcCEE
Confidence 48999998864 489999 999999999999999998843 389999998 443 23457998
Q ss_pred EEEEecCCC-CeeeCChHHHHHHHHHHHHHHhcC
Q 013511 292 DVVKLQKSG-GVVSRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 292 ~vl~l~~~g-~vv~~~~~~~~~~r~~~~~~yf~g 324 (441)
.++ ++| +++..++... ....+.+||..
T Consensus 974 l~L---~~GG~iv~~G~~~~---~~~~~~~yf~~ 1001 (1394)
T TIGR00956 974 LLL---QKGGQTVYFGDLGE---NSHTIINYFEK 1001 (1394)
T ss_pred EEE---cCCCEEEEECCccc---ccchHHHHHHh
Confidence 888 666 7887775321 22345678864
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.75 E-value=4e-19 Score=192.15 Aligned_cols=161 Identities=14% Similarity=0.124 Sum_probs=118.8
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++++|+++.|++.+ .++++ +||++++|++++|+||||||||||+|+|+|+ .+|.+|++.+++.
T Consensus 450 ~~i~~~nv~~~~~~~~-~il~~--isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl------------~~~~~G~i~~~~~ 514 (659)
T TIGR00954 450 NGIKFENIPLVTPNGD-VLIES--LSFEVPSGNHLLICGPNGCGKSSLFRILGEL------------WPVYGGRLTKPAK 514 (659)
T ss_pred CeEEEEeeEEECCCCC-eeeec--ceEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCCeEeecCC
Confidence 4678889998885332 46765 9999999999999999999999999999999 8999999887641
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH------------HHHHH---------HHHHH---------H
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK------------VLVKE---------LAQML---------E 227 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~------------~~~~~---------l~~~~---------~ 227 (441)
..+.+.++..+++.. |+++|+.+.. ..+.+ +.+.. .
T Consensus 515 -------------~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~ 580 (659)
T TIGR00954 515 -------------GKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWM 580 (659)
T ss_pred -------------CcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccc
Confidence 122333333345554 7888876521 11111 11111 1
Q ss_pred HHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 228 RQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 228 ~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
..||+||+||+++ +|+|| +++||+...+.+.+.+++. ..++|+++|+ +... +.+|++.++
T Consensus 581 ~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~-~~tvI~isH~-----~~~~-~~~d~il~l 651 (659)
T TIGR00954 581 DVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF-GITLFSVSHR-----KSLW-KYHEYLLYM 651 (659)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-CCEEEEEeCc-----hHHH-HhCCEEEEE
Confidence 4699999998876 99999 9999999999999999886 3588999999 5443 568998777
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.72 E-value=6.9e-18 Score=194.70 Aligned_cols=178 Identities=15% Similarity=0.166 Sum_probs=132.9
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccCCceeeeeeccCcCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITIPGCIAATPIELPIDPVE 191 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~~G~~~~~~~~~~~~~~~ 191 (441)
.++++ +|+.+++|++++|+||||||||||+|+|+|. ++|+ +|+|.++|...... ..+.
T Consensus 179 ~IL~~--vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~------------l~~~~~~~G~I~~nG~~~~~~-----~~~~ 239 (1470)
T PLN03140 179 TILKD--ASGIIKPSRMTLLLGPPSSGKTTLLLALAGK------------LDPSLKVSGEITYNGYRLNEF-----VPRK 239 (1470)
T ss_pred eeccC--CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC------------CCCCCcceeEEEECCEechhh-----cccc
Confidence 46665 9999999999999999999999999999999 8888 89999999754221 1123
Q ss_pred CCCcccceEEEecccCccCCHHHHHHHH---------------------------------------------HHHHH--
Q 013511 192 GIPLEMPLVYFFGHATPSNNVELYKVLV---------------------------------------------KELAQ-- 224 (441)
Q Consensus 192 ~~~~~~~~~~~~g~~tv~en~~~~~~~~---------------------------------------------~~l~~-- 224 (441)
.+.+..+...+++.+|++||+.+..+.. +.+.+
T Consensus 240 ~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l 319 (1470)
T PLN03140 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL 319 (1470)
T ss_pred eeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc
Confidence 3455555557889999999998754310 00110
Q ss_pred ------------HHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhh
Q 013511 225 ------------MLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLF 278 (441)
Q Consensus 225 ------------~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~ 278 (441)
...+.+|+||+||+++ +++|| +++||......+.+.++++.. .+||+++|+.
T Consensus 320 GL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp-- 397 (1470)
T PLN03140 320 GLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP-- 397 (1470)
T ss_pred CCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC--
Confidence 1113589999999886 99999 999999999999999998842 3888888762
Q ss_pred HHHHHHhcCCCCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHhcCC
Q 013511 279 SMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYFYGL 325 (441)
Q Consensus 279 ~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf~g~ 325 (441)
..+....+|++.++ ..|.++..++.. ...+||...
T Consensus 398 --~~~i~~lfD~vilL---~~G~ivy~G~~~-------~~~~yF~~l 432 (1470)
T PLN03140 398 --APETFDLFDDIILL---SEGQIVYQGPRD-------HILEFFESC 432 (1470)
T ss_pred --CHHHHHHhheEEEe---eCceEEEeCCHH-------HHHHHHHHc
Confidence 13445578999888 889999887632 235677653
No 355
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.71 E-value=2.6e-18 Score=190.91 Aligned_cols=188 Identities=15% Similarity=0.180 Sum_probs=152.0
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
..+.+.|+.+.|+.++. |.++ +++.+++||+.++.|+|||||||++++|.|. ..|+.|++.++|.
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~--ls~~V~~gecfgLLG~NGAGKtT~f~mltG~------------~~~t~G~a~i~g~ 627 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRG--LSFAVPPGECFGLLGVNGAGKTTTFKMLTGE------------TKPTSGEALIKGH 627 (885)
T ss_pred ceEEEcceeeeecchhh-hhcc--eEEEecCCceEEEecCCCCCchhhHHHHhCC------------ccCCcceEEEecC
Confidence 45667889999988764 6655 9999999999999999999999999999999 9999999999997
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHH-----------HHH---------HHHHHHHhccCccce
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLV-----------KEL---------AQMLERQFNGNAESR 237 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~-----------~~l---------~~~~~~~ls~g~~~r 237 (441)
.+..... .......+++.+|...++..+|.+|++.+|.+.- +.+ ++.....+|+|+++|
T Consensus 628 ~i~~~~~-~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRk 706 (885)
T KOG0059|consen 628 DITVSTD-FQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRR 706 (885)
T ss_pred ccccccc-hhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhh
Confidence 6543222 1113345666677778899999999999987541 111 223345689999988
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
.+. +++|| ++++||.+++.+++++.+.+.+ .||.++|. ++++..+|+|+.++ -+|+..-
T Consensus 707 Ls~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHs-----MeE~EaLCtR~aIm---v~G~l~c 778 (885)
T KOG0059|consen 707 LSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHS-----MEEAEALCTRTAIM---VIGQLRC 778 (885)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCC-----HHHHHHHhhhhhee---ecCeeEE
Confidence 664 89999 9999999999999999998754 89999999 99999999999999 8898887
Q ss_pred CChHH
Q 013511 305 RNSKV 309 (441)
Q Consensus 305 ~~~~~ 309 (441)
-+..+
T Consensus 779 iGs~q 783 (885)
T KOG0059|consen 779 IGSPQ 783 (885)
T ss_pred ecChH
Confidence 67544
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.71 E-value=8e-18 Score=194.54 Aligned_cols=179 Identities=17% Similarity=0.107 Sum_probs=131.0
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec----cCCCCcccCCceeeeeeccCcCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL----DIGQGAITIPGCIAATPIELPIDPV 190 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl----dp~~G~i~~~G~~~~~~~~~~~~~~ 190 (441)
.++++ +|+.+++|++++|+||||||||||+|+|+|+ . .|.+|+|.++|....... .. .+
T Consensus 75 ~iL~~--vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~------------~~~~~~~~~G~I~~~G~~~~~~~-~~--~r 137 (1394)
T TIGR00956 75 DILKP--MDGLIKPGELTVVLGRPGSGCSTLLKTIASN------------TDGFHIGVEGVITYDGITPEEIK-KH--YR 137 (1394)
T ss_pred eeeeC--CEEEEECCEEEEEECCCCCCHHHHHHHHhCC------------CCCCCCCceeEEEECCEehHHHH-hh--cC
Confidence 46655 9999999999999999999999999999998 5 468999999997542111 11 12
Q ss_pred CCCCcccceEEEecccCccCCHHHHHHH---------------H----HHHHHH--------------HHHHhccCccce
Q 013511 191 EGIPLEMPLVYFFGHATPSNNVELYKVL---------------V----KELAQM--------------LERQFNGNAESR 237 (441)
Q Consensus 191 ~~~~~~~~~~~~~g~~tv~en~~~~~~~---------------~----~~l~~~--------------~~~~ls~g~~~r 237 (441)
..+.+..+...+++.+|++||+.+.... . +.+.+. ....+|+||+||
T Consensus 138 ~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR 217 (1394)
T TIGR00956 138 GDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR 217 (1394)
T ss_pred ceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH
Confidence 2344555555688999999999875321 0 111110 012489999999
Q ss_pred eee----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 238 AAG----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 238 ~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+++ +++|| +++||......+.++|+++.. .+||+++|+. .....+.+|++.++ ++|+++
T Consensus 218 vsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~----~~~i~~l~D~v~~L---~~G~iv 290 (1394)
T TIGR00956 218 VSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC----SQDAYELFDKVIVL---YEGYQI 290 (1394)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC----CHHHHHhhceEEEE---eCCeEE
Confidence 876 99999 999999999999999998753 3788888871 13455678999998 889988
Q ss_pred eCChHHHHHHHHHHHHHHhcC
Q 013511 304 SRNSKVRQKARSYRIREYFYG 324 (441)
Q Consensus 304 ~~~~~~~~~~r~~~~~~yf~g 324 (441)
..++.. ...+||..
T Consensus 291 ~~G~~~-------~~~~yF~~ 304 (1394)
T TIGR00956 291 YFGPAD-------KAKQYFEK 304 (1394)
T ss_pred EECCHH-------HHHHHHHH
Confidence 877532 34567754
No 357
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=1.9e-18 Score=199.23 Aligned_cols=181 Identities=15% Similarity=0.155 Sum_probs=130.8
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC--CCCcccCCceeeeeeccCcCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI--GQGAITIPGCIAATPIELPIDPVEG 192 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp--~~G~i~~~G~~~~~~~~~~~~~~~~ 192 (441)
.++++ +|+.+++|++++|+||||||||||+++|+|. .++ .+|+|.++|.... .... +..
T Consensus 894 ~iL~~--vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~------------~~~g~~~G~I~inG~~~~---~~~~--~~~ 954 (1470)
T PLN03140 894 QLLRE--VTGAFRPGVLTALMGVSGAGKTTLMDVLAGR------------KTGGYIEGDIRISGFPKK---QETF--ARI 954 (1470)
T ss_pred eEeeC--cEEEEECCeEEEEECCCCCCHHHHHHHHcCC------------CCCCcccceEEECCccCC---hHHh--hhh
Confidence 46765 9999999999999999999999999999998 553 5799999996421 1111 122
Q ss_pred CCcccceEEEecccCccCCHHHHHHH--------------HHHHH---------HHHH-----HHhccCccceeee----
Q 013511 193 IPLEMPLVYFFGHATPSNNVELYKVL--------------VKELA---------QMLE-----RQFNGNAESRAAG---- 240 (441)
Q Consensus 193 ~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~---------~~~~-----~~ls~g~~~r~~~---- 240 (441)
+++..+...+++.+|++||+.+.... ++++. +... ..||+||+||+++
T Consensus 955 igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL 1034 (1470)
T PLN03140 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVEL 1034 (1470)
T ss_pred eEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHH
Confidence 34444444678899999999875321 11111 1111 3589999998876
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHH-HHhcCCCCeEEEEecCC-CCeeeCChHH
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLR-DVLKNRPNVDVVKLQKS-GGVVSRNSKV 309 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~-~~~~~~~~v~vl~l~~~-g~vv~~~~~~ 309 (441)
+++|| |++||......+.++++++.. .+||+++|+ .. .....+|++.++ +. |+++..++..
T Consensus 1035 ~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq-----~~~~i~~~~D~vllL---~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1035 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ-----PSIDIFEAFDELLLM---KRGGQVIYSGPLG 1106 (1470)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC-----CCHHHHHhCCEEEEE---cCCCEEEEECCcc
Confidence 99999 999999999999999999853 389999998 43 234567998887 65 6777777533
Q ss_pred HHHHHHHHHHHHhcCC
Q 013511 310 RQKARSYRIREYFYGL 325 (441)
Q Consensus 310 ~~~~r~~~~~~yf~g~ 325 (441)
. +.....+||...
T Consensus 1107 ~---~~~~~~~yF~~~ 1119 (1470)
T PLN03140 1107 R---NSHKIIEYFEAI 1119 (1470)
T ss_pred c---ccccHHHHHHhc
Confidence 2 334567888763
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.70 E-value=3.2e-18 Score=199.79 Aligned_cols=171 Identities=15% Similarity=0.183 Sum_probs=125.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++++|+++.|++....++++ ++|++++|++++|+||||||||||+++|+|. ++|.+|+|.++|.+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~--isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~------------~~~~~G~i~~~g~i 701 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNG--ITFSIPEGALVAVVGQVGCGKSSLLSALLAE------------MDKVEGHVHMKGSV 701 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeee--eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC------------CccCCcEEEECCEE
Confidence 466777888886433346765 9999999999999999999999999999999 99999999998843
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHH----HHHH------HHH--------------HHHHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKV----LVKE------LAQ--------------MLERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~----~~~~------l~~--------------~~~~~ls~g~ 234 (441)
. +..|.| .++ +.|++||+.++.. ...+ +.+ .....|||||
T Consensus 702 ~-------------yv~Q~~--~l~-~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQ 765 (1522)
T TIGR00957 702 A-------------YVPQQA--WIQ-NDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765 (1522)
T ss_pred E-------------EEcCCc--ccc-CCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHH
Confidence 2 222222 333 4688888876421 1111 011 1123599999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHH---c-CCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDT---F-KANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~---~-~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
+||+++ +|+|| +++||+...+.+.+.+.. + +..++|++||+ +... ..+|++.++ ++
T Consensus 766 kqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~-----~~~l-~~~D~ii~l---~~ 836 (1522)
T TIGR00957 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHG-----ISYL-PQVDVIIVM---SG 836 (1522)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCC-----hhhh-hhCCEEEEe---cC
Confidence 999876 99999 999999988888877753 2 33489999999 5443 348999888 88
Q ss_pred CCeeeCChH
Q 013511 300 GGVVSRNSK 308 (441)
Q Consensus 300 g~vv~~~~~ 308 (441)
|.+++.++.
T Consensus 837 G~i~~~g~~ 845 (1522)
T TIGR00957 837 GKISEMGSY 845 (1522)
T ss_pred CeEEeeCCH
Confidence 998887763
No 359
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=4.1e-18 Score=190.86 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=145.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-++++|++.+|...-..++++ +|+++++||+|+|||.+|||||||+.+|..+ ..|.+|+|.+||.+
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~--is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl------------~e~~~G~I~IDgvd 1203 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKG--ISFTIKPGEKVGIVGRTGAGKSSLILALFRL------------VEPAEGEILIDGVD 1203 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcC--ceEEEcCCceEEEeCCCCCCHHHHHHHHHHh------------cCccCCeEEEcCee
Confidence 477888999998776678876 9999999999999999999999999999999 99999999999998
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------HHHHHHHHH-----------HHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------VKELAQMLE-----------RQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------~~~l~~~~~-----------~~ls~g~ 234 (441)
+....-+.++.+.++..|.| .+|. -|++.|++-+... +++.....+ ..+|.||
T Consensus 1204 I~~igL~dLRsrlsIIPQdP--vLFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1204 ISKIGLHDLRSRLSIIPQDP--VLFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred cccccHHHHHhcCeeeCCCC--ceec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 86654455666666666666 3444 4899998644221 111111111 2367788
Q ss_pred ccee----------eeEEEeC-CCCCCchhHHHHHHHHHH-cCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCe
Q 013511 235 ESRA----------AGMVINT-MGWIEGVGYELLLHAIDT-FKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 235 ~~r~----------~~lIlDE-~~~lD~~~~~~l~~li~~-~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
||-+ .++++|| |+.+|+..-..+.+.|++ |+..||+.+.|. +..+. .+|+|.|+ +.|.+
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR-----l~TVm-d~DrVlVl---d~G~v 1351 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR-----LNTVM-DSDRVLVL---DAGRV 1351 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec-----cchhh-hcCeEEEe---eCCeE
Confidence 8644 4599999 999999988889888876 565699999999 77775 68999999 99999
Q ss_pred eeCChHHH
Q 013511 303 VSRNSKVR 310 (441)
Q Consensus 303 v~~~~~~~ 310 (441)
++.|++..
T Consensus 1352 ~EfdsP~~ 1359 (1381)
T KOG0054|consen 1352 VEFDSPAE 1359 (1381)
T ss_pred eecCChHH
Confidence 99998654
No 360
>PLN03130 ABC transporter C family member; Provisional
Probab=99.70 E-value=7.2e-18 Score=196.94 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=124.3
Q ss_pred chhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC-CcccCCc
Q 013511 99 MVSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ-GAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~-G~i~~~G 176 (441)
.++++|+++.|+.. ...++++ +++++++|+.++|+||+|||||||+++|+|. ++|.+ |+|.+.|
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~--inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~------------~~~~~GG~I~l~~ 679 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSN--INLDVPVGSLVAIVGSTGEGKTSLISAMLGE------------LPPRSDASVVIRG 679 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeec--eeEEecCCCEEEEECCCCCCHHHHHHHHHHh------------hccCCCceEEEcC
Confidence 35667777777642 1245765 9999999999999999999999999999999 99999 8987554
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----HHH------H---HHHH-----------HHHhcc
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----VKE------L---AQML-----------ERQFNG 232 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----~~~------l---~~~~-----------~~~ls~ 232 (441)
. +.+..|...+| +.|++||+.++... +.+ + .+.+ ...|||
T Consensus 680 ~---------------Iayv~Q~p~Lf-ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSG 743 (1622)
T PLN03130 680 T---------------VAYVPQVSWIF-NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISG 743 (1622)
T ss_pred e---------------EEEEcCccccC-CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCH
Confidence 3 23334433444 46999999875321 111 1 1111 124999
Q ss_pred Cccceeee----------EEEeC-CCCCCchhHHHH-HHHHHHc-CCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCC
Q 013511 233 NAESRAAG----------MVINT-MGWIEGVGYELL-LHAIDTF-KANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKS 299 (441)
Q Consensus 233 g~~~r~~~----------lIlDE-~~~lD~~~~~~l-~~li~~~-~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~ 299 (441)
||+||+++ +|+|| ++++|....+.+ .++++.. +..++|++||. +.. +..+|+|.++ ++
T Consensus 744 GQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~-----l~~-l~~aD~Ii~L---~~ 814 (1622)
T PLN03130 744 GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ-----LHF-LSQVDRIILV---HE 814 (1622)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECC-----HhH-HHhCCEEEEE---eC
Confidence 99999876 99999 999998765544 5666654 44589999999 533 3568999888 89
Q ss_pred CCeeeCChHH
Q 013511 300 GGVVSRNSKV 309 (441)
Q Consensus 300 g~vv~~~~~~ 309 (441)
|.+++.++..
T Consensus 815 G~i~e~Gt~~ 824 (1622)
T PLN03130 815 GMIKEEGTYE 824 (1622)
T ss_pred CEEEEeCCHH
Confidence 9999888643
No 361
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.6e-18 Score=147.95 Aligned_cols=156 Identities=16% Similarity=0.192 Sum_probs=109.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---CCcccCC
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---QGAITIP 175 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---~G~i~~~ 175 (441)
|+.++|++...++.. .+.+ +++++.+||++-++||+|||||||+..+.|. +++. +|++.++
T Consensus 2 ~l~l~nvsl~l~g~c--LLa~--~n~Tia~GeivtlMGPSGcGKSTLls~~~G~------------La~~F~~~G~~~l~ 65 (213)
T COG4136 2 MLCLKNVSLRLPGSC--LLAN--VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGA------------LAGQFSCTGELWLN 65 (213)
T ss_pred ceeeeeeeecCCCce--EEEe--eeEEecCCcEEEEECCCCccHHHHHHHHHhh------------cccCcceeeEEEEC
Confidence 445667776666653 3333 8999999999999999999999999999999 7764 6888888
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH-------------------HHHHHHHHHHHhccCccc
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL-------------------VKELAQMLERQFNGNAES 236 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~-------------------~~~l~~~~~~~ls~g~~~ 236 (441)
++........ ....|+.||. ..+|+++++.+|+.|.... +..+..+.+..+||||+.
T Consensus 66 ~~~l~~lPa~--qRq~GiLFQD--~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrA 141 (213)
T COG4136 66 EQRLDMLPAA--QRQIGILFQD--ALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRA 141 (213)
T ss_pred Ceeccccchh--hhheeeeecc--cccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHH
Confidence 8765332211 1234555554 4689999999998764210 122334556789999998
Q ss_pred eeee----------EEEeC-CCCCCchhHHHH----HHHHHHcCCCEEEEeCCc
Q 013511 237 RAAG----------MVINT-MGWIEGVGYELL----LHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 237 r~~~----------lIlDE-~~~lD~~~~~~l----~~li~~~~~~~Vivi~h~ 275 (441)
|+++ +++|| ++.+|..-++.. ..-+++...-+ +.+|||
T Consensus 142 RvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPt-v~VTHD 194 (213)
T COG4136 142 RVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPT-VQVTHD 194 (213)
T ss_pred HHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCe-EEEecc
Confidence 8876 99999 899997654444 44444444434 455788
No 362
>PLN03232 ABC transporter C family member; Provisional
Probab=99.69 E-value=7.3e-18 Score=196.49 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=122.6
Q ss_pred hhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 100 VSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 100 l~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
++++|+++.|+.. ...++++ +||++++|+.++|+||+|||||||+++|+|. ++|.+|.+.
T Consensus 615 I~~~~vsF~y~~~~~~~vL~~--inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~------------~~~~~G~i~----- 675 (1495)
T PLN03232 615 ISIKNGYFSWDSKTSKPTLSD--INLEIPVGSLVAIVGGTGEGKTSLISAMLGE------------LSHAETSSV----- 675 (1495)
T ss_pred EEEEeeEEEcCCCCCCceeee--eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC------------CcccCCCEE-----
Confidence 5567777777642 1246765 9999999999999999999999999999999 999988652
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHH----HHH------HHH---HH-----------HHHhccCc
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVL----VKE------LAQ---ML-----------ERQFNGNA 234 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~----~~~------l~~---~~-----------~~~ls~g~ 234 (441)
. .+..+.+..|...+|. .|++||+.++... +.+ +.+ .. ...|||||
T Consensus 676 ---~------~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ---V------IRGSVAYVPQVSWIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ---E------ecCcEEEEcCcccccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 0 1122344444445554 6999999875321 111 111 11 12499999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHH-HHHHHHc-CCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCC
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELL-LHAIDTF-KANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGG 301 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l-~~li~~~-~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~ 301 (441)
+||+++ +|+|| +++||....+.+ .++++.. +..++|++||+ +.. ...+|++.++ ++|.
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~-----~~~-l~~aD~Ii~L---~~G~ 816 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ-----LHF-LPLMDRIILV---SEGM 816 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECC-----hhh-HHhCCEEEEE---eCCE
Confidence 999876 99999 999998876555 4556654 34589999998 543 3568999888 8999
Q ss_pred eeeCChHH
Q 013511 302 VVSRNSKV 309 (441)
Q Consensus 302 vv~~~~~~ 309 (441)
+++.++..
T Consensus 817 i~~~Gt~~ 824 (1495)
T PLN03232 817 IKEEGTFA 824 (1495)
T ss_pred EEEecCHH
Confidence 99888643
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=5.3e-17 Score=169.28 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=114.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.++++++|+++.|++.+ ..+++ +||.+.+|++++|+||||+|||||+|+|+|. +.|.+|.|.+.-
T Consensus 319 ~~vl~~~~~~~~y~~~~-~l~~~--~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~------------~~~~~G~v~~g~ 383 (530)
T COG0488 319 KLVLEFENVSKGYDGGR-LLLKD--LSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE------------LGPLSGTVKVGE 383 (530)
T ss_pred CeeEEEeccccccCCCc-eeecC--ceEEecCCCEEEEECCCCCCHHHHHHHHhhh------------cccCCceEEeCC
Confidence 34678899999997652 45544 9999999999999999999999999999999 889999887644
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHH---------HHHHH------HHHHHHHHHhccCccceeee-
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELY---------KVLVK------ELAQMLERQFNGNAESRAAG- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~---------~~~~~------~l~~~~~~~ls~g~~~r~~~- 240 (441)
.+...+..... ..+.+..|+.+++.-+ +..+. +........|||||+.|+.+
T Consensus 384 ~v~igyf~Q~~------------~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 384 TVKIGYFDQHR------------DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred ceEEEEEEehh------------hhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 33222222111 0111223333333221 11111 12234456799999977654
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
||+|| |+.||..+++.|.++|..+.. +||+++||+. -.-+.++++.++
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~G-tvl~VSHDr~-----Fl~~va~~i~~~ 509 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEG-TVLLVSHDRY-----FLDRVATRIWLV 509 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCC-eEEEEeCCHH-----HHHhhcceEEEE
Confidence 99999 999999999999999999975 6777789843 222346776666
No 364
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.67 E-value=4.1e-17 Score=147.58 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=89.1
Q ss_pred hhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCC
Q 013511 114 NHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGI 193 (441)
Q Consensus 114 ~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~ 193 (441)
..++++ +||++.+|++++|+||||||||||+|+|.+ .+|++.+.|..... ....+
T Consensus 8 ~~~l~~--isl~i~~G~~~~l~G~nG~GKSTLl~~il~----------------~~G~v~~~~~~~~~-------~~~~~ 62 (176)
T cd03238 8 VHNLQN--LDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----------------ASGKARLISFLPKF-------SRNKL 62 (176)
T ss_pred eeeecc--eEEEEcCCCEEEEECCCCCCHHHHHHHHhh----------------cCCcEEECCccccc-------ccccE
Confidence 356655 999999999999999999999999998843 26777665532100 00111
Q ss_pred CcccceEEEecccCccCCHHHHHHH-HHH-HHHHHHHHhccCccce------------eeeEEEeC-CCCCCchhHHHHH
Q 013511 194 PLEMPLVYFFGHATPSNNVELYKVL-VKE-LAQMLERQFNGNAESR------------AAGMVINT-MGWIEGVGYELLL 258 (441)
Q Consensus 194 ~~~~~~~~~~g~~tv~en~~~~~~~-~~~-l~~~~~~~ls~g~~~r------------~~~lIlDE-~~~lD~~~~~~l~ 258 (441)
.+ ++. ..+.... +.. ..+.....||+|++|| ..++|+|| ++++|+..++.+.
T Consensus 63 ~~-------~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 63 IF-------IDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred EE-------EhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 11 111 0110000 000 0122334566666654 34699999 9999999999999
Q ss_pred HHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 259 HAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 259 ~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+.++++. ..+||+++|+ +... +.+|++.++
T Consensus 130 ~~l~~~~~~g~tvIivSH~-----~~~~-~~~d~i~~l 161 (176)
T cd03238 130 EVIKGLIDLGNTVILIEHN-----LDVL-SSADWIIDF 161 (176)
T ss_pred HHHHHHHhCCCEEEEEeCC-----HHHH-HhCCEEEEE
Confidence 9998874 3489999999 5443 468998777
No 365
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.67 E-value=4.8e-17 Score=189.49 Aligned_cols=155 Identities=16% Similarity=0.250 Sum_probs=115.1
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++++ ++|++++|++++|+||||||||||+++|+|. ++|.+|+|.++|.+.
T Consensus 440 ~~l~~--i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~------------~~~~~G~i~~~g~ia--------------- 490 (1490)
T TIGR01271 440 PVLKN--ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE------------LEPSEGKIKHSGRIS--------------- 490 (1490)
T ss_pred cceee--eEEEECCCCEEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEEE---------------
Confidence 35655 9999999999999999999999999999999 999999999988422
Q ss_pred cccceEEEecccCccCCHHHHHH--------HHH--HHHHHH--------------HHHhccCccceeee----------
Q 013511 195 LEMPLVYFFGHATPSNNVELYKV--------LVK--ELAQML--------------ERQFNGNAESRAAG---------- 240 (441)
Q Consensus 195 ~~~~~~~~~g~~tv~en~~~~~~--------~~~--~l~~~~--------------~~~ls~g~~~r~~~---------- 240 (441)
+..+...+|+ .|++||+.++.. .++ .+.+.+ ...||+||+||+++
T Consensus 491 yv~Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i 569 (1490)
T TIGR01271 491 FSPQTSWIMP-GTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL 569 (1490)
T ss_pred EEeCCCccCC-ccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 2222223444 488888876421 111 111111 13599999999876
Q ss_pred EEEeC-CCCCCchhHHHHHH-HHHHcC-CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 MVINT-MGWIEGVGYELLLH-AIDTFK-ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 lIlDE-~~~lD~~~~~~l~~-li~~~~-~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+|+|| +++||....+.+.+ ++..+. ..++|++||+ +... ..||++.++ ++|.++..++.
T Consensus 570 llLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~-----~~~~-~~ad~ii~l---~~g~i~~~g~~ 631 (1490)
T TIGR01271 570 YLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK-----LEHL-KKADKILLL---HEGVCYFYGTF 631 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC-----hHHH-HhCCEEEEE---ECCEEEEEcCH
Confidence 99999 99999999888876 455543 3499999999 5544 358999888 78888877663
No 366
>PLN03073 ABC transporter F family; Provisional
Probab=99.66 E-value=9.1e-18 Score=182.06 Aligned_cols=186 Identities=13% Similarity=0.107 Sum_probs=117.1
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
...++++.|+++.|++. .++++ +||++.+|++++|+|+||||||||+|+|+|.. ++..|.+|+|.+.
T Consensus 174 ~~~~I~i~nls~~y~~~--~ll~~--isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~---------~~g~p~~g~I~~~ 240 (718)
T PLN03073 174 AIKDIHMENFSISVGGR--DLIVD--ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA---------IDGIPKNCQILHV 240 (718)
T ss_pred CceeEEEceEEEEeCCC--EEEEC--CEEEECCCCEEEEECCCCCCHHHHHHHHcCCC---------CCCCCCCCEEEEE
Confidence 44579999999999865 36765 99999999999999999999999999999861 0113556666532
Q ss_pred ceeeeeec--------cCcC------CCCCCCCcccceEEEe-------c--ccC-ccCCH-HHHHHHH-----------
Q 013511 176 GCIAATPI--------ELPI------DPVEGIPLEMPLVYFF-------G--HAT-PSNNV-ELYKVLV----------- 219 (441)
Q Consensus 176 G~~~~~~~--------~~~~------~~~~~~~~~~~~~~~~-------g--~~t-v~en~-~~~~~~~----------- 219 (441)
++...... .... ....++.++.+...+. + ... ..+.+ .......
T Consensus 241 ~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 241 EQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred eccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 22110000 0000 0001111111100000 0 000 00100 0000000
Q ss_pred --------------HHHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCC
Q 013511 220 --------------KELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQ 274 (441)
Q Consensus 220 --------------~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h 274 (441)
....+.....||+|++||+.+ +|+|| +++||+.+.+.+.+.++++. .+||+++|
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~-~tviivsH 399 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP-KTFIVVSH 399 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcC-CEEEEEEC
Confidence 011233456799999998776 99999 99999999999999999984 48888999
Q ss_pred chhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 275 EKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 275 ~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+ +......|+++.++ ++|.+.
T Consensus 400 d-----~~~l~~~~d~i~~l---~~g~i~ 420 (718)
T PLN03073 400 A-----REFLNTVVTDILHL---HGQKLV 420 (718)
T ss_pred C-----HHHHHHhCCEEEEE---ECCEEE
Confidence 9 66666678999888 677775
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=3.6e-17 Score=142.53 Aligned_cols=177 Identities=16% Similarity=0.166 Sum_probs=114.4
Q ss_pred chhHHHHHHHH-----hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCccc
Q 013511 99 MVSYVNVNAVL-----EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAIT 173 (441)
Q Consensus 99 ml~~~nl~~~~-----~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~ 173 (441)
++.+.|++|.| ++.+..++++ +||+++.||++++-||+|||||||+|+|.+- .-|++|+|.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~--vslsV~aGECvvL~G~SG~GKStllr~LYaN------------Y~~d~G~I~ 69 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRN--VSLSVNAGECVVLHGPSGSGKSTLLRSLYAN------------YLPDEGQIL 69 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeec--eeEEecCccEEEeeCCCCCcHHHHHHHHHhc------------cCCCCceEE
Confidence 45667777776 3333445655 9999999999999999999999999999887 899999998
Q ss_pred CCceeee-eecc-Cc---CC-CCCCCCcccceEEEecccCccCCHHHHH-----------HHH----------HHHHHHH
Q 013511 174 IPGCIAA-TPIE-LP---ID-PVEGIPLEMPLVYFFGHATPSNNVELYK-----------VLV----------KELAQML 226 (441)
Q Consensus 174 ~~G~~~~-~~~~-~~---~~-~~~~~~~~~~~~~~~g~~tv~en~~~~~-----------~~~----------~~l~~~~ 226 (441)
+...... .... .+ +. .+..+++..+.....+..+..|-+.-.. ... ++|..-.
T Consensus 70 v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La 149 (235)
T COG4778 70 VRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA 149 (235)
T ss_pred EEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC
Confidence 7332110 0000 11 01 1123444444334455444433322111 001 1222333
Q ss_pred HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEE
Q 013511 227 ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDV 293 (441)
Q Consensus 227 ~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~v 293 (441)
+..+|||++||+.+ +++|| |+.||..++..+.++|.+-+.. .++=+-||+. . ....+||+.-
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee---v--re~vadR~~~ 224 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE---V--REAVADRLLD 224 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH---H--HHHHhhheee
Confidence 44589999999886 99999 9999999999999999988754 6776778833 2 2235677554
Q ss_pred E
Q 013511 294 V 294 (441)
Q Consensus 294 l 294 (441)
+
T Consensus 225 ~ 225 (235)
T COG4778 225 V 225 (235)
T ss_pred c
Confidence 4
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.62 E-value=5.9e-16 Score=142.95 Aligned_cols=154 Identities=13% Similarity=0.117 Sum_probs=100.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC---------CCcccCCceeeeeeccCcCCCCCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG---------QGAITIPGCIAATPIELPIDPVEG 192 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~---------~G~i~~~G~~~~~~~~~~~~~~~~ 192 (441)
+++++.+| +++|+||||||||||+++|+++ +.+. .|++.+.|..... .......+
T Consensus 16 ~~l~~~~g-~~~i~G~nGsGKStll~al~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~ 79 (197)
T cd03278 16 TTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV------------LGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVT 79 (197)
T ss_pred eeeecCCC-cEEEECCCCCCHHHHHHHHHHH------------hccccchhhcccCHHHHhccCCCCCC---CCceEEEE
Confidence 67788999 9999999999999999999998 4333 2345555543211 11112234
Q ss_pred CCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhccCcccee--------------eeEEEeC-CCCCCchhHHHH
Q 013511 193 IPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRA--------------AGMVINT-MGWIEGVGYELL 257 (441)
Q Consensus 193 ~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l 257 (441)
+.++.+..+ |+.. ..+.+.-.... ....+.....||+|++||+ .++++|| ++++|+...+.+
T Consensus 80 ~vfq~~~~~-~~~~-~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l 156 (197)
T cd03278 80 LTFDNSDGR-YSII-SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERF 156 (197)
T ss_pred EEEEcCCCc-eeEE-ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHH
Confidence 555544333 2211 11222211111 2333455677888888754 3599999 999999999999
Q ss_pred HHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 258 LHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 258 ~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
.++++++... +||+++|+ +... +.+|++..+...++|
T Consensus 157 ~~~l~~~~~~~tiIiitH~-----~~~~-~~~d~v~~~~~~~~~ 194 (197)
T cd03278 157 ARLLKEFSKETQFIVITHR-----KGTM-EAADRLYGVTMQESG 194 (197)
T ss_pred HHHHHHhccCCEEEEEECC-----HHHH-hhcceEEEEEeccCC
Confidence 9999998644 88899999 4433 468998877654444
No 369
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.61 E-value=4.6e-17 Score=158.48 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=117.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-+++.|+.++|.... ..+ ..+++++++||+|.|+|.||||||||+++|.|+ ..|++|+|.++|..
T Consensus 322 ~lelrnvrfay~~~~-Fhv--gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL------------~~PqsG~I~ldg~p 386 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHV--GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL------------YQPQSGEILLDGKP 386 (546)
T ss_pred ceeeeeeeeccCccc-cee--cceeeEEecCcEEEEECCCCCcHHHHHHHHhcc------------cCCCCCceeECCcc
Confidence 467788888887653 233 348999999999999999999999999999999 99999999999965
Q ss_pred eeeeccCcCCCCCCCCcccceEEEecccCccC------CHHHHHHHHHHHHH--------HHHHHhccCccceeee----
Q 013511 179 AATPIELPIDPVEGIPLEMPLVYFFGHATPSN------NVELYKVLVKELAQ--------MLERQFNGNAESRAAG---- 240 (441)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~e------n~~~~~~~~~~l~~--------~~~~~ls~g~~~r~~~---- 240 (441)
......+.. +.-+.-.+.+.++|+.+=-.| ++..|...++ ++. -...+||.||++|.+.
T Consensus 387 V~~e~ledY--R~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLe-l~~ktsl~d~~fs~~kLStGQkKRlAll~Al 463 (546)
T COG4615 387 VSAEQLEDY--RKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE-LAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463 (546)
T ss_pred CCCCCHHHH--HHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHH-HhhhhcccCCcccccccccchHHHHHHHHHH
Confidence 422111111 111222233334444332222 3444444322 111 1224689999988764
Q ss_pred ------EEEeC-CCCCCchhHHHH-HHHHHHcC--CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHHH
Q 013511 241 ------MVINT-MGWIEGVGYELL-LHAIDTFK--ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVR 310 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l-~~li~~~~--~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~ 310 (441)
+++|| -+--||.-++.+ ..++-.++ ..||+.++||+-|-.. +||..-+ .+|++++...+.+
T Consensus 464 lEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~------ADrll~~---~~G~~~e~tge~~ 534 (546)
T COG4615 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH------ADRLLEM---RNGQLSELTGEER 534 (546)
T ss_pred HhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh------HHHHHHH---hcCceeecccccc
Confidence 99999 888898755433 33333333 2488888998543333 3443344 7888887765443
No 370
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.59 E-value=1.1e-15 Score=133.99 Aligned_cols=176 Identities=15% Similarity=0.206 Sum_probs=117.6
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCC-------CCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVE-------GIP 194 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~-------~~~ 194 (441)
+|.++..|+++=+|||||||||||+..|+|+ -|.+|+|.+.|..........+...+ .-.
T Consensus 18 lS~qv~aGe~~HliGPNGaGKSTLLA~lAGm-------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~ 84 (248)
T COG4138 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPP 84 (248)
T ss_pred cccccccceEEEEECCCCccHHHHHHHHhCC-------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCc
Confidence 6788999999999999999999999999995 78999999999765333222221111 112
Q ss_pred cccceEEEecccCccC-------CHHHHHHH--HHHHHHHHHHHhccCccceeee-----------------EEEeC-CC
Q 013511 195 LEMPLVYFFGHATPSN-------NVELYKVL--VKELAQMLERQFNGNAESRAAG-----------------MVINT-MG 247 (441)
Q Consensus 195 ~~~~~~~~~g~~tv~e-------n~~~~~~~--~~~l~~~~~~~ls~g~~~r~~~-----------------lIlDE-~~ 247 (441)
|..| .|-+++... .+...... +.+-..+....||||+-||+.+ +++|| .+
T Consensus 85 f~mp---V~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~ 161 (248)
T COG4138 85 FAMP---VWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN 161 (248)
T ss_pred chhh---hhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence 2222 111122111 11110000 1111234456799999988765 89999 89
Q ss_pred CCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHHHHHHHHHHHHHHh
Q 013511 248 WIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKVRQKARSYRIREYF 322 (441)
Q Consensus 248 ~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~~~~~r~~~~~~yf 322 (441)
.+|......+-.++.++... +||+.+|| ++..++.++++-++ +.|.+...++.+. -++..-+.+.|
T Consensus 162 ~LDvAQ~~aLdrll~~~c~~G~~vims~HD-----LNhTLrhA~~~wLL---~rG~l~~~G~~~e-Vlt~~vL~q~f 229 (248)
T COG4138 162 SLDVAQQSALDRLLSALCQQGLAIVMSSHD-----LNHTLRHAHRAWLL---KRGKLLASGRREE-VLTPPVLAQAY 229 (248)
T ss_pred chhHHHHHHHHHHHHHHHhCCcEEEEeccc-----hhhHHHHHHHHHHH---hcCeEEeecchhh-hcChHHHHHHh
Confidence 99998888888888888755 89999999 88888888998887 7888777665332 23444444444
No 371
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=8.6e-16 Score=164.14 Aligned_cols=168 Identities=16% Similarity=0.187 Sum_probs=122.0
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC---CCCcccCCceeeeeeccCcCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI---GQGAITIPGCIAATPIELPIDPVE 191 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp---~~G~i~~~G~~~~~~~~~~~~~~~ 191 (441)
..+++ ++..+++|++.+|+||+|||||||+++|+|. .+. .+|+|.++|... ..+.. +.
T Consensus 44 ~iL~~--vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr------------~~~~~~~~G~ilvNG~~~---~~~~~--~~ 104 (613)
T KOG0061|consen 44 TILKG--VSGTAKPGELLAIMGPSGSGKTTLLNALAGR------------LNGGLKLSGEILLNGRPR---DSRSF--RK 104 (613)
T ss_pred eeeeC--cEEEEecCeEEEEECCCCCCHHHHHHHHhcc------------ccCCCcceEEEEECCccC---chhhh--hh
Confidence 45654 9999999999999999999999999999999 554 479999999422 11112 22
Q ss_pred CCCcccceEEEecccCccCCHHHHHHH--------------HHHHH---------HHHH-----HHhccCccceeee---
Q 013511 192 GIPLEMPLVYFFGHATPSNNVELYKVL--------------VKELA---------QMLE-----RQFNGNAESRAAG--- 240 (441)
Q Consensus 192 ~~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~~l~---------~~~~-----~~ls~g~~~r~~~--- 240 (441)
-.++..|+..+++++||+|++.+.... ++++. +... +.+|+||++|+++
T Consensus 105 ~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~E 184 (613)
T KOG0061|consen 105 ISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALE 184 (613)
T ss_pred eeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHH
Confidence 345566667899999999999886543 11111 1111 2489999999886
Q ss_pred -------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 -------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 -------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+++|| |++||......+.++++++..+ +||++=|..- .+.++.-|++.++ ..|.++..++.
T Consensus 185 ll~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs----s~lf~lFD~l~lL---s~G~~vy~G~~ 255 (613)
T KOG0061|consen 185 LLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS----SELFELFDKLLLL---SEGEVVYSGSP 255 (613)
T ss_pred HHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc----HHHHHHHhHhhhh---cCCcEEEecCH
Confidence 99999 9999999999999999988654 6666555521 1222334666677 78888888864
No 372
>PTZ00243 ABC transporter; Provisional
Probab=99.57 E-value=1.5e-15 Score=177.28 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=110.0
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIP 194 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~ 194 (441)
.++++ +||++.+|++++|+||||||||||+++|+|. ++|.+|+|.+.+.+ ++.
T Consensus 674 ~iL~~--isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~------------~~~~~G~i~~~~~i-------------~yv 726 (1560)
T PTZ00243 674 VLLRD--VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ------------FEISEGRVWAERSI-------------AYV 726 (1560)
T ss_pred eeEee--eEEEECCCCEEEEECCCCCcHHHHHHHHhcC------------CCCCCcEEEECCeE-------------EEE
Confidence 36655 9999999999999999999999999999999 99999998754321 222
Q ss_pred cccceEEEecccCccCCHHHHHH--------HHH-----HHHHH-----------HHHHhccCccceeee----------
Q 013511 195 LEMPLVYFFGHATPSNNVELYKV--------LVK-----ELAQM-----------LERQFNGNAESRAAG---------- 240 (441)
Q Consensus 195 ~~~~~~~~~g~~tv~en~~~~~~--------~~~-----~l~~~-----------~~~~ls~g~~~r~~~---------- 240 (441)
.|.+ .++ ..|++||+.++.. .++ +..+. ....||+||+||+++
T Consensus 727 ~Q~~--~l~-~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i 803 (1560)
T PTZ00243 727 PQQA--WIM-NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV 803 (1560)
T ss_pred eCCC--ccC-CCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2333 333 4588888876421 011 00111 123489999998876
Q ss_pred EEEeC-CCCCCchhHHHHHH-HH-HHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCCh
Q 013511 241 MVINT-MGWIEGVGYELLLH-AI-DTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNS 307 (441)
Q Consensus 241 lIlDE-~~~lD~~~~~~l~~-li-~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~ 307 (441)
+|+|| +++||+...+.+.+ ++ ...+..++|++||+ +... ..+|++.++ ++|.++..+.
T Consensus 804 llLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~-----~~~~-~~ad~ii~l---~~G~i~~~G~ 864 (1560)
T PTZ00243 804 YLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ-----VHVV-PRADYVVAL---GDGRVEFSGS 864 (1560)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCC-----HHHH-HhCCEEEEE---ECCEEEEecC
Confidence 99999 99999987666654 33 33344589999999 4443 468999998 8888887765
No 373
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=5e-15 Score=166.33 Aligned_cols=172 Identities=18% Similarity=0.282 Sum_probs=124.4
Q ss_pred chhHHHHHHHHhhh-hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 99 MVSYVNVNAVLEGR-RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 99 ml~~~nl~~~~~~~-~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++.|.++.++.. ....+++ ++|++++|+.++|||+.|||||||+..|+|- +...+|.+.++|.
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~d--In~~i~~G~lvaVvG~vGsGKSSLL~AiLGE------------m~~~sG~v~v~gs 583 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKD--INFEIKKGQLVAVVGPVGSGKSSLLSAILGE------------MPKLSGSVAVNGS 583 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccc--eeEEecCCCEEEEECCCCCCHHHHHHHHhcC------------cccccceEEEcCe
Confidence 34445555555441 1125554 9999999999999999999999999999999 9999999999996
Q ss_pred eeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHHHHHHHHHHH------------------------HHHHhccC
Q 013511 178 IAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYKVLVKELAQM------------------------LERQFNGN 233 (441)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~------------------------~~~~ls~g 233 (441)
.+ +..|.| +..+-|++||+.|+...-++..+. ..-.||||
T Consensus 584 ia-------------Yv~Q~p---WI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGG 647 (1381)
T KOG0054|consen 584 VA-------------YVPQQP---WIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGG 647 (1381)
T ss_pred EE-------------Eecccc---HhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHh
Confidence 32 112222 555679999998764322111111 11239999
Q ss_pred ccceeee----------EEEeC-CCCCCch-hHHHHHHHHHHcC-CCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 234 AESRAAG----------MVINT-MGWIEGV-GYELLLHAIDTFK-ANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 234 ~~~r~~~----------lIlDE-~~~lD~~-~~~~l~~li~~~~-~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
||||+++ +++|- .+.+|.. ++..+.+.|+.+- ..++|.+||. +. .+..+|.|.++ ++|
T Consensus 648 QKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHq-----l~-~L~~ad~Iivl---~~G 718 (1381)
T KOG0054|consen 648 QKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQ-----LQ-FLPHADQIIVL---KDG 718 (1381)
T ss_pred HHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCc-----hh-hhhhCCEEEEe---cCC
Confidence 9998876 99999 8999975 5666677776654 3599999997 43 23567999999 999
Q ss_pred CeeeCChHH
Q 013511 301 GVVSRNSKV 309 (441)
Q Consensus 301 ~vv~~~~~~ 309 (441)
.+.+.|+-+
T Consensus 719 ~I~~~Gty~ 727 (1381)
T KOG0054|consen 719 KIVESGTYE 727 (1381)
T ss_pred eEecccCHH
Confidence 999988743
No 374
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.54 E-value=3e-15 Score=141.31 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=50.8
Q ss_pred HHHHhccCcccee------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 226 LERQFNGNAESRA------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 226 ~~~~ls~g~~~r~------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
....||+|++||+ .++|+|| ++++|+..++.+.+++++++. .+||+++|+ +... +.||+
T Consensus 134 ~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~-----~~~~-~~~d~ 207 (226)
T cd03270 134 SAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD-----EDTI-RAADH 207 (226)
T ss_pred ccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC-----HHHH-HhCCE
Confidence 4456899998874 3799999 999999999999999988743 389999999 5544 47899
Q ss_pred eEEE
Q 013511 291 VDVV 294 (441)
Q Consensus 291 v~vl 294 (441)
+.++
T Consensus 208 i~~l 211 (226)
T cd03270 208 VIDI 211 (226)
T ss_pred EEEe
Confidence 8877
No 375
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.51 E-value=1.3e-14 Score=151.16 Aligned_cols=166 Identities=19% Similarity=0.292 Sum_probs=110.4
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC-
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP- 175 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~- 175 (441)
..+++++|++..-++.+ ..+++ .++++++|+.++|.|+||||||||+|+|+|+ .+-++|.|..|
T Consensus 390 ~~~i~~~nl~l~~p~~~-~ll~~--l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL------------WP~g~G~I~~P~ 454 (604)
T COG4178 390 DHGITLENLSLRTPDGQ-TLLSE--LNFEVRPGERLLITGESGAGKTSLLRALAGL------------WPWGSGRISMPA 454 (604)
T ss_pred cceeEEeeeeEECCCCC-eeecc--ceeeeCCCCEEEEECCCCCCHHHHHHHHhcc------------CccCCCceecCC
Confidence 45667777776666544 33443 8999999999999999999999999999999 99999999888
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCc-cCCHHHHH----HHHHHHHHH------HHHHhccCccceeee----
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATP-SNNVELYK----VLVKELAQM------LERQFNGNAESRAAG---- 240 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv-~en~~~~~----~~~~~l~~~------~~~~ls~g~~~r~~~---- 240 (441)
++.+.-..++|.-.. | .+... -.||.... ...-.+-. -.+.++.++ ..+.||+|++||++.
T Consensus 455 ~~~~lflpQ~PY~p~-G-tLre~--l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 455 DSALLFLPQRPYLPQ-G-TLREA--LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred CCceEEecCCCCCCC-c-cHHHH--HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 433333333332111 1 11111 11222111 11111111 112333333 346799999998775
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHH
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSML 281 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l 281 (441)
++||| |+++|+.....+.+++++--++ +||-++|......+
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNF 579 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHH
Confidence 99999 9999999999999999986565 88889998544433
No 376
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.47 E-value=3.7e-14 Score=132.67 Aligned_cols=72 Identities=15% Similarity=0.198 Sum_probs=55.1
Q ss_pred HHHHHHHhccCcccee--------------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhH
Q 013511 223 AQMLERQFNGNAESRA--------------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFS 279 (441)
Q Consensus 223 ~~~~~~~ls~g~~~r~--------------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~ 279 (441)
.+.....+|+|++||+ .++|+|| ++++|+...+.+.+++++++. .+||+++|+
T Consensus 117 l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~---- 192 (213)
T cd03279 117 LARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHV---- 192 (213)
T ss_pred hcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECc----
Confidence 3444456777777653 3599999 999999999999999998864 389999999
Q ss_pred HHHHHhcCCCCeEEEEecCCCCe
Q 013511 280 MLRDVLKNRPNVDVVKLQKSGGV 302 (441)
Q Consensus 280 ~l~~~~~~~~~v~vl~l~~~g~v 302 (441)
+......++++.++ +.|++
T Consensus 193 -~~~~~~~~~~i~~~---~~~~~ 211 (213)
T cd03279 193 -EELKERIPQRLEVI---KTPGG 211 (213)
T ss_pred -hHHHHhhCcEEEEE---ecCCC
Confidence 65555678888888 66654
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.46 E-value=4.9e-16 Score=134.68 Aligned_cols=110 Identities=23% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
++++++.+|++++|+|+||||||||+++|+|. ..|.+|.|.++|..+........ ...+.+..+..
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~------------~~~~~G~i~~~~~~~~~~~~~~~--~~~i~~~~~~~ 68 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL------------LPPDSGSILINGKDISDIDIEEL--RRRIGYVPQDP 68 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS------------SHESEEEEEETTEEGTTSHHHHH--HHTEEEEESSH
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccc------------ccccccccccccccccccccccc--ccccccccccc
Confidence 37889999999999999999999999999999 99999999999975533111111 12333444445
Q ss_pred EEecccCccCCHHHHHHHHHHHHH---------HHH----HHhccCccceeee----------EEEeCC
Q 013511 201 YFFGHATPSNNVELYKVLVKELAQ---------MLE----RQFNGNAESRAAG----------MVINTM 246 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~~~~~~l~~---------~~~----~~ls~g~~~r~~~----------lIlDE~ 246 (441)
.++...|+.+|. ....+.++.+ ... ..||+|++||+.+ +|+||+
T Consensus 69 ~~~~~~tv~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 69 QLFPGLTVRENE--SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp CHHTTSBHHHHH--HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred cccccccccccc--ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 677778888772 1112222211 222 5688898887765 999994
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.42 E-value=8e-14 Score=132.90 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=50.6
Q ss_pred HHHHhccCccce--------------eeeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCC
Q 013511 226 LERQFNGNAESR--------------AAGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 226 ~~~~ls~g~~~r--------------~~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
....+|+|++|| ..++|+|| ++++|+...+.+.+.++++... +|++++|. . ...+.||
T Consensus 155 ~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-----~-~~~~~~d 228 (243)
T cd03272 155 EMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-----P-ELLEVAD 228 (243)
T ss_pred cccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-----H-HHHhhCC
Confidence 345688887754 24699999 9999999999999999998544 77777777 2 2346789
Q ss_pred CeEEEEecC
Q 013511 290 NVDVVKLQK 298 (441)
Q Consensus 290 ~v~vl~l~~ 298 (441)
++.++....
T Consensus 229 ~i~~l~~~~ 237 (243)
T cd03272 229 KFYGVKFRN 237 (243)
T ss_pred EEEEEEEEC
Confidence 998886643
No 379
>KOG2750 consensus Uncharacterized conserved protein similar to ATP/GTP-binding protein [General function prediction only]
Probab=99.42 E-value=2.2e-12 Score=130.64 Aligned_cols=141 Identities=30% Similarity=0.444 Sum_probs=95.6
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcC-CccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCc--ccceEEEec
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLG-WKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPL--EMPLVYFFG 204 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g-~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~g 204 (441)
--++++++|+.||||||++|.+.+..+..+ ..+++.|.|++|.++.++|+++...+..++......-. ..-+.++.+
T Consensus 206 ~~p~im~~g~kgsgKSt~~r~~i~~~l~~~y~~v~~l~~d~gq~e~sp~g~is~~~lssPi~~~v~~~ql~~~~l~~~~~ 285 (587)
T KOG2750|consen 206 YQPRIMVIGGKGSGKSTFVRKLINEFLQDIYDHVFSLDCDEGQPEYSPPGCISLTKLSSPIDLKVHLCQLSNTLLQFYAG 285 (587)
T ss_pred cCceeEEeccCCcccchHHHHHHHHHHHhhheEEEEEeccCCCceecCccccccccccCccccchhhhhhchhhhhhhcc
Confidence 347899999999999999999999976665 56777899999999999999887777766654321110 111112333
Q ss_pred ccCccCCHHHHHHHHHHHHHHHHHHhccCcc--ceeeeEEEeCCCCCCchhHHHHHHHHHHcCCCEEEEeCCc
Q 013511 205 HATPSNNVELYKVLVKELAQMLERQFNGNAE--SRAAGMVINTMGWIEGVGYELLLHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 205 ~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~--~r~~~lIlDE~~~lD~~~~~~l~~li~~~~~~~Vivi~h~ 275 (441)
. ..|.+.+..+.+.+......-+. .-...+|+|.+||+.+.+.+.+..+++..+++++|-++.+
T Consensus 286 s-------d~~~~~v~~l~~~~~~~f~~se~~~~~~~~~IIn~pGwi~g~gaell~~I~Ri~qPt~~V~~~~s 351 (587)
T KOG2750|consen 286 S-------DHYQREVTSLFNCYQRLFDHSEEQPKFFGPLIINLPGWIKGFGAELLNHIIRIYQPTHFVEIEIS 351 (587)
T ss_pred c-------hhhhhhhhhHHHHHHHhccchhhcccccCceEEecCCccccccHHHHHhHHhhcChhheeehhhh
Confidence 1 23333344444433332211111 1223489999999999999999999999888877766543
No 380
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1e-13 Score=136.56 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=101.1
Q ss_pred CCCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 96 ETPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 96 ~~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
..|++-+.+++|.|.++... .. .++|-|.-..+++|+||||.|||||+++|.|- ++|..|+..-+
T Consensus 583 ~PPvLGlH~VtFgy~gqkpL-Fk--kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk------------l~P~~GE~RKn 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPL-FK--KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK------------LDPNDGELRKN 647 (807)
T ss_pred CCCeeecccccccCCCCCch-hh--cccccccccceeEEECCCCccHHHHHHHHhcC------------CCCCcchhhcc
Confidence 35678899999999665432 33 27888888899999999999999999999999 99999987544
Q ss_pred ceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHH-----HHHHHHHHH--------H-HHHHHhccCccceeee-
Q 013511 176 GCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVEL-----YKVLVKELA--------Q-MLERQFNGNAESRAAG- 240 (441)
Q Consensus 176 G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~-----~~~~~~~l~--------~-~~~~~ls~g~~~r~~~- 240 (441)
-.. +.|+.-+.....+-+..|+.+.+.. |...-+.|. . -....|||||+.|+.+
T Consensus 648 hrL-----------~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 648 HRL-----------RIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred cee-----------eeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 321 1121111111112222333322211 000111110 0 0113489999988765
Q ss_pred ---------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCc
Q 013511 241 ---------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 241 ---------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~ 275 (441)
||+|| ++.||..+.+.|.+.|.+++..+ |+++||
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgV-i~VsHD 760 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGV-IMVSHD 760 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcE-EEEecc
Confidence 99999 99999999999999999998655 455666
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.42 E-value=2.3e-13 Score=135.12 Aligned_cols=168 Identities=15% Similarity=0.216 Sum_probs=108.9
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
..+.+|-++.+.|++.+..+-. =++..||+++++||||-|||||+++|+|. +.|++|. ..+=
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~-----G~i~~gEvigilGpNgiGKTTFvk~LAG~------------ikPdeg~-~~~~ 401 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEE-----GEIYDGEVIGILGPNGIGKTTFVKLLAGV------------IKPDEGS-EEDL 401 (591)
T ss_pred ceeeecchheeecCceEEEecC-----CeeecceEEEEECCCCcchHHHHHHHhcc------------ccCCCCC-Cccc
Confidence 5578889999999986533322 24688999999999999999999999999 9999997 2111
Q ss_pred eeeeeeccCcCCCC-CCCCcccceEEEecccCcc--CCHHHHHH-----HHHHHHHHHHHHhccCccceeee--------
Q 013511 177 CIAATPIELPIDPV-EGIPLEMPLVYFFGHATPS--NNVELYKV-----LVKELAQMLERQFNGNAESRAAG-------- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~tv~--en~~~~~~-----~~~~l~~~~~~~ls~g~~~r~~~-------- 240 (441)
.++..+ .-+... .+-+. .++...+.. .+-.+... .+..+.++....||||+.||+++
T Consensus 402 ~vSyKP--QyI~~~~~gtV~-----~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 402 KVSYKP--QYISPDYDGTVE-----DLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred eEeecc--eeecCCCCCcHH-----HHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 122111 001100 01000 001000000 00001111 24566677778899999999876
Q ss_pred --EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 241 --MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 241 --lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
.+||| .+.||...+-.....|+++-. .+.+++.||-. -.--++|++.|+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~-----~~dyvsDr~ivF 529 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY-----MIDYVSDRLIVF 529 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEeccee-----hhhhhhceEEEE
Confidence 99999 788999888888888888743 38888999933 222367888877
No 382
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.41 E-value=1.8e-13 Score=131.27 Aligned_cols=166 Identities=16% Similarity=0.071 Sum_probs=100.0
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHc--C------------------CccEEEeccCCCCccc-CCceee
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL--G------------------WKPTFVDLDIGQGAIT-IPGCIA 179 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~--g------------------~~~~~vDldp~~G~i~-~~G~~~ 179 (441)
++++++..|..++|+|++|||||||++.+.--+++. + .++++||-.|=..+-. .|.+-.
T Consensus 13 ~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ty~ 92 (261)
T cd03271 13 NIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPATYT 92 (261)
T ss_pred CceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHHHHH
Confidence 489999999999999999999999998664322221 1 2245555544322110 000000
Q ss_pred eeeccCcCC-----------CC---CCCCcccceEEEecccCccCCHHHHHHHH--H------------H-HHHHHHHHh
Q 013511 180 ATPIELPID-----------PV---EGIPLEMPLVYFFGHATPSNNVELYKVLV--K------------E-LAQMLERQF 230 (441)
Q Consensus 180 ~~~~~~~~~-----------~~---~~~~~~~~~~~~~g~~tv~en~~~~~~~~--~------------~-l~~~~~~~l 230 (441)
.+-+.++ .. ..+.+.......+..+|+.|++.++.... . . ..+.....|
T Consensus 93 --~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~L 170 (261)
T cd03271 93 --GVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTL 170 (261)
T ss_pred --HHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccC
Confidence 0000000 00 00111122223456788888888764321 0 1 112334568
Q ss_pred ccCcccee-------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 231 NGNAESRA-------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 231 s~g~~~r~-------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
|+|++||+ .++|+|| +++||+...+.+.++++++.. .+||+++|+ +... +.+|++.++
T Consensus 171 SgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~-----~~~i-~~aD~ii~L 244 (261)
T cd03271 171 SGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN-----LDVI-KCADWIIDL 244 (261)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHH-HhCCEEEEe
Confidence 99988764 3599999 999999999999999998753 489999999 5444 357876665
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.41 E-value=2e-13 Score=138.06 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.|.+.+.|+++.|.+.. ...++ ++|-+..+.++++|||||+|||||+|++.|. +.|..|.+...-
T Consensus 387 ~pvi~~~nv~F~y~~~~-~iy~~--l~fgid~~srvAlVGPNG~GKsTLlKl~~gd------------l~p~~G~vs~~~ 451 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP-MIYKK--LNFGIDLDSRVALVGPNGAGKSTLLKLITGD------------LQPTIGMVSRHS 451 (614)
T ss_pred CCeEEEeccccCCCCcc-hhhhh--hhcccCcccceeEecCCCCchhhhHHHHhhc------------cccccccccccc
Confidence 56778899999998764 34443 8899999999999999999999999999999 999999986532
Q ss_pred eeeeeeccCcCCCCCCCCcccceEEEecccCccCC----------HHHHHHHHH------HHHHHHHHHhccCccceeee
Q 013511 177 CIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNN----------VELYKVLVK------ELAQMLERQFNGNAESRAAG 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en----------~~~~~~~~~------~l~~~~~~~ls~g~~~r~~~ 240 (441)
........ .....+. --+.++.++ ....+..+. +........||.|++.|+..
T Consensus 452 H~~~~~y~------Qh~~e~l-----dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 452 HNKLPRYN------QHLAEQL-----DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred cccchhhh------hhhHhhc-----CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 11100000 0000000 001111111 111111221 12234456799999988764
Q ss_pred ----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCc-hhhHHHHHH
Q 013511 241 ----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQE-KLFSMLRDV 284 (441)
Q Consensus 241 ----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~-~l~~~l~~~ 284 (441)
|+||| |++||....+.+.+.|.++.. .||+++|| ++.+.+.+-
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~G-gvv~vSHDfrlI~qVaeE 575 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPG-GVVLVSHDFRLISQVAEE 575 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCC-ceeeeechhhHHHHHHHH
Confidence 99999 999999999999999999865 55666787 555555443
No 384
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=2.1e-13 Score=150.50 Aligned_cols=181 Identities=16% Similarity=0.222 Sum_probs=125.5
Q ss_pred hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC--CCcccCCceeeeeeccCcCCCCCC
Q 013511 115 HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG--QGAITIPGCIAATPIELPIDPVEG 192 (441)
Q Consensus 115 ~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~--~G~i~~~G~~~~~~~~~~~~~~~~ 192 (441)
..|++ |+=-+++|-.++++|+||||||||+++|+|. ..-+ +|+|.++|... .+....+..|
T Consensus 805 qLL~~--V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R------------~t~G~I~Gdi~i~G~p~---~q~tF~R~~G 867 (1391)
T KOG0065|consen 805 QLLNN--VSGAFKPGVLTALMGESGAGKTTLLDVLAGR------------KTGGYIEGDILISGFPK---DQETFARVSG 867 (1391)
T ss_pred Ehhhc--CceEecCCceeehhcCCCCchHHHHHHHhcC------------cccceEEeEEEECCeeC---chhhhccccc
Confidence 45654 8878899999999999999999999999998 4333 68999999632 1134444455
Q ss_pred CCcccceEEEecccCccCCHHHHHHH--------------HH---------HHHHHHHHH----hccCccceeee-----
Q 013511 193 IPLEMPLVYFFGHATPSNNVELYKVL--------------VK---------ELAQMLERQ----FNGNAESRAAG----- 240 (441)
Q Consensus 193 ~~~~~~~~~~~g~~tv~en~~~~~~~--------------~~---------~l~~~~~~~----ls~g~~~r~~~----- 240 (441)
+.-|.+ .+.+..||+|-+.+...+ ++ .+++.+... ||..||+|..+
T Consensus 868 YvqQ~D--iH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELv 945 (1391)
T KOG0065|consen 868 YVEQQD--IHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELV 945 (1391)
T ss_pred eeeccc--ccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEe
Confidence 544443 567999999998875432 11 222333332 77778877665
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCch---hhHHHHHHhcCCCCeEEEEecCCCCeeeCChH
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEK---LFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSK 308 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~---l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~ 308 (441)
+++|| |++||......++++++++..+ +|+++=|.. +++.. |++.++ .+.|+.+..|+-
T Consensus 946 A~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~F-------D~LLLL--krGGqtVY~G~l 1016 (1391)
T KOG0065|consen 946 ANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAF-------DELLLL--KRGGQTVYFGPL 1016 (1391)
T ss_pred cCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHH-------hHHHHH--hcCCeEEEecCc
Confidence 89999 9999999999999999998754 888776652 33333 554344 467778877763
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 013511 309 VRQKARSYRIREYFYGLT 326 (441)
Q Consensus 309 ~~~~~r~~~~~~yf~g~~ 326 (441)
-. ....+-+||..-.
T Consensus 1017 G~---~s~~li~YFes~~ 1031 (1391)
T KOG0065|consen 1017 GE---NSSKLIEYFESIG 1031 (1391)
T ss_pred cc---ccHHHHHHHHhcC
Confidence 22 3445678998643
No 385
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=3.2e-13 Score=138.12 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=125.6
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcC-CCCCCCCcccce
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPI-DPVEGIPLEMPL 199 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~-~~~~~~~~~~~~ 199 (441)
++||++.+||+++|.|--|||+|-|+++|.|+ -.+.+|+|.++|....... +. ....++.|.+.+
T Consensus 277 dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~------------~~~~~G~i~l~G~~v~~~s--p~~Ai~~Gi~~v~ED 342 (500)
T COG1129 277 DVSFTVRAGEILGIAGLVGAGRTELARALFGA------------RPASSGEILLDGKPVRIRS--PRDAIKAGIAYVPED 342 (500)
T ss_pred CceeEEeCCcEEEEeccccCCHHHHHHHHhCC------------CcCCCceEEECCEEccCCC--HHHHHHcCCEeCCcc
Confidence 49999999999999999999999999999998 7788999999998653221 11 123355554332
Q ss_pred ---EEEecccCccCCHHHHH-HH------H-----HHHHH--------------HHHHHhccCccceeee----------
Q 013511 200 ---VYFFGHATPSNNVELYK-VL------V-----KELAQ--------------MLERQFNGNAESRAAG---------- 240 (441)
Q Consensus 200 ---~~~~g~~tv~en~~~~~-~~------~-----~~l~~--------------~~~~~ls~g~~~r~~~---------- 240 (441)
..++..+++.+|+.+.. .. + ...++ .....||||.||++.+
T Consensus 343 Rk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~v 422 (500)
T COG1129 343 RKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422 (500)
T ss_pred cccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCE
Confidence 35677888999987651 11 0 11111 2224599999998765
Q ss_pred EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 241 MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 241 lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
||+|| |-++|.-.+..+.++|+++..+ .||+++++ |.+.+..||||.|| +.|+++.
T Consensus 423 LilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSE-----lpEll~~~DRIlVm---~~Gri~~ 481 (500)
T COG1129 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSE-----LPELLGLSDRILVM---REGRIVG 481 (500)
T ss_pred EEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCC-----hHHHHhhCCEEEEE---ECCEEEE
Confidence 99999 9999999999999999999765 89999999 99999999999999 8888775
No 386
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.40 E-value=3.8e-13 Score=124.95 Aligned_cols=153 Identities=13% Similarity=0.048 Sum_probs=92.5
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccc---eE
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMP---LV 200 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~---~~ 200 (441)
+++.+| +++|+||||||||||+++|...+. |. ..|+.|.+..+...... .......++.++.+ ..
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~--G~------~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~ 85 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALT--GE------LPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKY 85 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHc--CC------CCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEE
Confidence 344566 999999999999999999963310 00 44444433211100000 00011112222222 11
Q ss_pred EEecccCccCCHHHHH-HHHHHHHHHHHHHhccCcccee----------------eeEEEeC-CCCCCchhHH-HHHHHH
Q 013511 201 YFFGHATPSNNVELYK-VLVKELAQMLERQFNGNAESRA----------------AGMVINT-MGWIEGVGYE-LLLHAI 261 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~-~~~~~l~~~~~~~ls~g~~~r~----------------~~lIlDE-~~~lD~~~~~-~l~~li 261 (441)
.....+++.+|+.+.. ..+..+.+.....||+|+++++ .++++|| ++.+|+..++ .+.+++
T Consensus 86 ~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l 165 (204)
T cd03240 86 TITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEII 165 (204)
T ss_pred EEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHH
Confidence 2234457777775432 1234445666678999999852 3499999 9999999998 999999
Q ss_pred HHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 262 DTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 262 ~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
++++. .+||+++|+ .... ..+|++..+
T Consensus 166 ~~~~~~~~~~iiiitH~-----~~~~-~~~d~i~~l 195 (204)
T cd03240 166 EERKSQKNFQLIVITHD-----EELV-DAADHIYRV 195 (204)
T ss_pred HHHHhccCCEEEEEEec-----HHHH-hhCCEEEEE
Confidence 88864 288999998 3332 357876655
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.35 E-value=7e-12 Score=115.92 Aligned_cols=124 Identities=12% Similarity=0.120 Sum_probs=75.6
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEe
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFF 203 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (441)
+++..|++++|+||||||||||+|+|++.. - +...|+.... ..+.++ ...+|
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~------------~-----l~~~G~~v~a---------~~~~~q--~~~l~ 71 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNV------------I-----LAQAGAPVCA---------SSFELP--PVKIF 71 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHH------------H-----HHHcCCEEec---------CccCcc--cceEE
Confidence 334668999999999999999999999872 1 2233432211 113333 24578
Q ss_pred cccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHH-HHHHHHcCC--CEEEEeCCc
Q 013511 204 GHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELL-LHAIDTFKA--NVVLVLGQE 275 (441)
Q Consensus 204 g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l-~~li~~~~~--~~Vivi~h~ 275 (441)
.++++.||+.+.......-..+...-+..-...+..++|+|| ++++|+.....+ ..+++.+.. .++|+++|+
T Consensus 72 ~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~ 147 (199)
T cd03283 72 TSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHD 147 (199)
T ss_pred EeccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCc
Confidence 888999988654321110011111112111113457899999 899999876544 445665532 388889998
No 388
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.28 E-value=6.8e-13 Score=119.31 Aligned_cols=183 Identities=14% Similarity=0.122 Sum_probs=112.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC-------CCc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG-------QGA 171 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~-------~G~ 171 (441)
.+++.++.+.|..... ..- ++++++..|.+.+++|.||||||||+|+|+|...-.+..+.+.+.+|- +|.
T Consensus 13 aievsgl~f~y~~~dP-~~~--Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDP-IFF--DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred eEEEeccEEecccCCc-eEE--EEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 3556677777766542 232 378899999999999999999999999999985554544444444442 233
Q ss_pred ccCCceeeeeeccCcCCCCCCCCcccceEEEecccCccCCHHHHH-----HHHHHHHH-------HHHHHhccCccceee
Q 013511 172 ITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHATPSNNVELYK-----VLVKELAQ-------MLERQFNGNAESRAA 239 (441)
Q Consensus 172 i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~tv~en~~~~~-----~~~~~l~~-------~~~~~ls~g~~~r~~ 239 (441)
..+-|.. .... .++.-..| +.+++++...+ +.. ..-+.|.+ -...++|.||++|+.
T Consensus 90 l~YLGge---W~~~-----~~~agevp---lq~D~sae~mi-fgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQ 157 (291)
T KOG2355|consen 90 LSYLGGE---WSKT-----VGIAGEVP---LQGDISAEHMI-FGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQ 157 (291)
T ss_pred eeEeccc---cccc-----cccccccc---ccccccHHHHH-hhccCCChhHhhhhhhheeccceEEEeeccccchhhhH
Confidence 3332211 1110 11111111 22334433211 110 00111111 112468899998876
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeee
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVS 304 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~ 304 (441)
+ +++|| |--||...+..+++.+++-.. .+||..||- ++-...-+..+..+ ++|.++.
T Consensus 158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI-----FDGLe~Wpthl~yi---~~Gkl~~ 228 (291)
T KOG2355|consen 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI-----FDGLETWPTHLVYI---KSGKLVD 228 (291)
T ss_pred HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee-----ccchhhcchhEEEe---cCCeeee
Confidence 5 99999 999999999999998887543 399999997 44444456777777 7887765
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.25 E-value=2.4e-12 Score=123.52 Aligned_cols=65 Identities=9% Similarity=0.080 Sum_probs=48.9
Q ss_pred HHHHhccCcccee--------------eeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCC
Q 013511 226 LERQFNGNAESRA--------------AGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRP 289 (441)
Q Consensus 226 ~~~~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~ 289 (441)
....||+|++||+ .++|+|| ++++|+...+.+.++++++... +||+++|.. +..+.||
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~------~~~~~~d 236 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKE------GMFNNAN 236 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCH------HHHHhCC
Confidence 3456788887642 4599999 9999999999999999987654 789999982 2234578
Q ss_pred CeEEEEe
Q 013511 290 NVDVVKL 296 (441)
Q Consensus 290 ~v~vl~l 296 (441)
++.-++.
T Consensus 237 ~v~~~~~ 243 (251)
T cd03273 237 VLFRTRF 243 (251)
T ss_pred EEEEEEe
Confidence 8766654
No 390
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.23 E-value=2.3e-12 Score=120.33 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=41.8
Q ss_pred eeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEe
Q 013511 239 AGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKL 296 (441)
Q Consensus 239 ~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l 296 (441)
.++++|| ++++|+..++.+.+.+++++.. ++|+++|+. ...+.||++.++..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~------~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN------NMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH------HHHHhCCEEEEEEe
Confidence 5799999 9999999999999999998654 777777872 23457899888744
No 391
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.21 E-value=3.9e-11 Score=122.54 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=101.1
Q ss_pred CchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 98 PMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 98 ~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.++++++++..-........+ ++||++.+|.-++|+||||||||+|+|.|+|+ .+..+|.+..|..
T Consensus 432 n~i~~e~v~l~tPt~g~~lie--~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL------------Wp~~~G~l~k~~~ 497 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIE--NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL------------WPSTGGKLTKPTD 497 (659)
T ss_pred ceEEeeeeeecCCCCCceeee--eeeeEecCCCeEEEECCCCCchhHHHHHHhcc------------cccCCCeEEeccc
Confidence 466666666555442223343 38999999999999999999999999999999 8889999987664
Q ss_pred e----eeeeccCcCCCCCCCCcccc----eEEEecccCccCCHHH--HHH--HHHHHHH-----------HHHHHhccCc
Q 013511 178 I----AATPIELPIDPVEGIPLEMP----LVYFFGHATPSNNVEL--YKV--LVKELAQ-----------MLERQFNGNA 234 (441)
Q Consensus 178 ~----~~~~~~~~~~~~~~~~~~~~----~~~~~g~~tv~en~~~--~~~--~~~~l~~-----------~~~~~ls~g~ 234 (441)
- ..-..++|.-. .| ....| .....+......+..+ ++. .+.++.+ .....||+|+
T Consensus 498 ~~~~~lfflPQrPYmt-~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 498 GGPKDLFFLPQRPYMT-LG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred CCCCceEEecCCCCcc-cc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHH
Confidence 3 11112222110 01 01111 1111122112222221 111 1222221 2335699999
Q ss_pred cceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCch
Q 013511 235 ESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEK 276 (441)
Q Consensus 235 ~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~ 276 (441)
+||.+. .|+|| |++++......+.+.+++.+. |.|-++|.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~gi-T~iSVgHRk 627 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGI-TFISVGHRK 627 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCC-eEEEeccHH
Confidence 999875 89999 999998888888888988776 566678874
No 392
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.21 E-value=4.6e-12 Score=114.30 Aligned_cols=177 Identities=12% Similarity=0.166 Sum_probs=120.4
Q ss_pred hhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccC----cCC
Q 013511 113 RNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIEL----PID 188 (441)
Q Consensus 113 ~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~----~~~ 188 (441)
+.++.+. +|++..+||+-+++|.+|||||-..|.|+|. .+..|++. .-.+.++..+......+ .+.
T Consensus 19 ~vK~VD~--v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v-~kdnW~vT-------ADR~Rf~~idLL~L~Pr~RRk~ig 88 (330)
T COG4170 19 WVKAVDR--VSMTLNEGEIRGLVGESGSGKSLIAKAICGV-NKDNWRVT-------ADRMRFDDIDLLRLSPRERRKLVG 88 (330)
T ss_pred ceEeeee--eeeeeccceeeeeeccCCCchhHHHHHHhcc-cccceEEE-------hhhcccccchhhcCChHHhhhhhc
Confidence 3455655 9999999999999999999999999999997 34444432 22344444433222111 122
Q ss_pred CCCCCCcccceEEEecccCccC----CHHH-------HHH-------H-----------HHHHHHHHHHHhccCccceee
Q 013511 189 PVEGIPLEMPLVYFFGHATPSN----NVEL-------YKV-------L-----------VKELAQMLERQFNGNAESRAA 239 (441)
Q Consensus 189 ~~~~~~~~~~~~~~~g~~tv~e----n~~~-------~~~-------~-----------~~~l~~~~~~~ls~g~~~r~~ 239 (441)
....+.||.|...+-++.++.. |+.. +.+ . .+++...++.+|-.|+-|++.
T Consensus 89 ~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVM 168 (330)
T COG4170 89 HNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVM 168 (330)
T ss_pred cchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeee
Confidence 3345677777766655544432 1111 000 0 133445666778888888776
Q ss_pred e----------EEEeC-CCCCCchhHHHHHHHHHHcCCC---EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 240 G----------MVINT-MGWIEGVGYELLLHAIDTFKAN---VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 240 ~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~---~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
+ +|.|| ++.+++..+..+..++.+++.+ +|+.++|| +...-+-||++.|+ .-|.-++.
T Consensus 169 IA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D-----l~~is~W~d~i~Vl---YCGQ~~ES 240 (330)
T COG4170 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD-----LQMISQWADKINVL---YCGQTVES 240 (330)
T ss_pred eehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc-----HHHHHHHhhheEEE---Eecccccc
Confidence 5 88999 9999999999999999988753 89999999 77777789999999 66666665
Q ss_pred Ch
Q 013511 306 NS 307 (441)
Q Consensus 306 ~~ 307 (441)
.+
T Consensus 241 a~ 242 (330)
T COG4170 241 AP 242 (330)
T ss_pred cc
Confidence 54
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.21 E-value=8.4e-12 Score=126.49 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=99.7
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
-+.+.|+++.|.+. ..+++ +.|++.+|++++|+|+|||||||++++|.+- ..|..-.+.+
T Consensus 75 dvk~~sls~s~~g~--~l~kd--~~~El~~g~rygLiG~nG~Gkst~L~~i~~~------------e~P~p~~~d~---- 134 (614)
T KOG0927|consen 75 DVKIESLSLSFHGV--ELIKD--VTLELNRGRRYGLIGPNGSGKSTFLRAIAGR------------EVPIPEHIDF---- 134 (614)
T ss_pred cceeeeeeeccCCc--eeeee--eeEEecCCceEEEEcCCCCcHhHHHHHHhcC------------CCCCCcccch----
Confidence 46778888888876 34544 8999999999999999999999999999998 5553333211
Q ss_pred eeeeccCcCCCCCC------CCcccc----eEEEeccc--CccC-C----HHHHHHH---------------------HH
Q 013511 179 AATPIELPIDPVEG------IPLEMP----LVYFFGHA--TPSN-N----VELYKVL---------------------VK 220 (441)
Q Consensus 179 ~~~~~~~~~~~~~~------~~~~~~----~~~~~g~~--tv~e-n----~~~~~~~---------------------~~ 220 (441)
. ..++.+..... +..... ..++...+ +..+ + ...|.+. ..
T Consensus 135 -y-~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~ 212 (614)
T KOG0927|consen 135 -Y-LLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLS 212 (614)
T ss_pred -h-hhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCH
Confidence 0 11111110000 000000 00000000 0000 0 0011110 12
Q ss_pred HHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCc-hhhHHHHHHhcCC
Q 013511 221 ELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQE-KLFSMLRDVLKNR 288 (441)
Q Consensus 221 ~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~-~l~~~l~~~~~~~ 288 (441)
.+..+....+|+|.+.|+++ |+||| |++||......|.+.+..+..-++|+++|. .+.. ..|
T Consensus 213 ~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln------~vC 286 (614)
T KOG0927|consen 213 EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLN------GVC 286 (614)
T ss_pred hHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhh------hHh
Confidence 33445556689998866554 99999 999999999999999999875456667777 2222 246
Q ss_pred CCeEEE
Q 013511 289 PNVDVV 294 (441)
Q Consensus 289 ~~v~vl 294 (441)
.+|.-+
T Consensus 287 T~Ii~l 292 (614)
T KOG0927|consen 287 TNIIHL 292 (614)
T ss_pred hhhhee
Confidence 665555
No 394
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.20 E-value=5e-11 Score=117.38 Aligned_cols=163 Identities=16% Similarity=0.212 Sum_probs=98.0
Q ss_pred hHHHHHHHHhhhhh----hhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 101 SYVNVNAVLEGRRN----HAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 101 ~~~nl~~~~~~~~~----~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
++..+..+|+.... .++++ ++|++++|++++|+|++||||||++|+|+|.+...+... ..|++|.+.+|-
T Consensus 379 e~~~IleSFGv~~r~ieryvlr~--vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~----y~p~sg~v~vp~ 452 (593)
T COG2401 379 EFQDILESFGVRQRVIERYVLRN--LNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEK----YRPDSGKVEVPK 452 (593)
T ss_pred HHHHHHHHhcchheeeeeeeeec--eeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccc----cCCCCCceeccc
Confidence 46677777765321 24555 999999999999999999999999999999977665321 478999998876
Q ss_pred eeeeeeccCcCCCCC-CCCcccceEEEecccCccC-CHHHH--HHH-H--HHHHHHHHHHhccCccceeee---------
Q 013511 177 CIAATPIELPIDPVE-GIPLEMPLVYFFGHATPSN-NVELY--KVL-V--KELAQMLERQFNGNAESRAAG--------- 240 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~tv~e-n~~~~--~~~-~--~~l~~~~~~~ls~g~~~r~~~--------- 240 (441)
.-.+......+.... +..++.+ +.+.+ .| |.+.. .+. + .-+..+...+||.||+.|..+
T Consensus 453 nt~~a~iPge~Ep~f~~~tileh----l~s~t-GD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn 527 (593)
T COG2401 453 NTVSALIPGEYEPEFGEVTILEH----LRSKT-GDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPN 527 (593)
T ss_pred cchhhccCcccccccCchhHHHH----Hhhcc-CchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCC
Confidence 432222221111111 1112211 22211 22 22211 110 0 112234456788888866544
Q ss_pred -EEEeC-CCCCCchhHHHHHHHHHHc----CCCEEEEeCCc
Q 013511 241 -MVINT-MGWIEGVGYELLLHAIDTF----KANVVLVLGQE 275 (441)
Q Consensus 241 -lIlDE-~~~lD~~~~~~l~~li~~~----~~~~Vivi~h~ 275 (441)
+++|| .+.||+.....+..-|.++ .. +++++||.
T Consensus 528 ~~~iDEF~AhLD~~TA~rVArkiselaRe~gi-TlivvThr 567 (593)
T COG2401 528 VLLIDEFAAHLDELTAVRVARKISELAREAGI-TLIVVTHR 567 (593)
T ss_pred cEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCC-eEEEEecC
Confidence 99999 8999998765555444444 44 55555665
No 395
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.13 E-value=4.6e-11 Score=120.43 Aligned_cols=187 Identities=13% Similarity=0.153 Sum_probs=133.5
Q ss_pred CCchhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 97 TPMVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 97 ~~ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.+.+++++++..-+.. ..++++ +||++..||+++|.|-.|-|-+-|+..|+|+ ..+.+|+|.++|
T Consensus 255 ~~vL~V~~L~v~~~~~-~~~v~~--vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl------------r~~~~G~I~l~G 319 (501)
T COG3845 255 EVVLEVEDLSVKDRRG-VTAVKD--VSFEVRAGEIVGIAGVAGNGQSELVEAISGL------------RKPASGRILLNG 319 (501)
T ss_pred CeEEEEeeeEeecCCC-Cceeee--eeeEEecCcEEEEEecCCCCHHHHHHHHhCC------------CccCCceEEECC
Confidence 3466677766543321 234544 9999999999999999999999999999998 778889999999
Q ss_pred eeeeeeccCcCCCCCCCCcccce---EEEecccCccCCHHHHHHH--------------HHHHHHHH-------------
Q 013511 177 CIAATPIELPIDPVEGIPLEMPL---VYFFGHATPSNNVELYKVL--------------VKELAQML------------- 226 (441)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~tv~en~~~~~~~--------------~~~l~~~~------------- 226 (441)
+..............++.+.+.+ ..+...+|+.+|..+.... +.+++...
T Consensus 320 ~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~ 399 (501)
T COG3845 320 KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA 399 (501)
T ss_pred EeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc
Confidence 87511111111123455544332 2456677888887664321 22222222
Q ss_pred -HHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 227 -ERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 227 -~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
...||||.+|++-+ ||+.. |-+||....+.+.+.|.+.+.. .|++++.| |++.+.+||++.
T Consensus 400 ~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d-----LDEil~lsDrIa 474 (501)
T COG3845 400 PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED-----LDEILELSDRIA 474 (501)
T ss_pred chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh-----HHHHHHhhheee
Confidence 24599999887643 88888 8889998899998888887654 89999999 999999999999
Q ss_pred EEEecCCCCeeeCC
Q 013511 293 VVKLQKSGGVVSRN 306 (441)
Q Consensus 293 vl~l~~~g~vv~~~ 306 (441)
|| ..|.++...
T Consensus 475 Vi---~~Gri~~~~ 485 (501)
T COG3845 475 VI---YEGRIVGIV 485 (501)
T ss_pred ee---eCCceeccc
Confidence 99 888876543
No 396
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=1.5e-10 Score=110.80 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=49.1
Q ss_pred HHhccCcccee--------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 228 RQFNGNAESRA--------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 228 ~~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
..||+|+++|+ .++|+|| ++++|+..++.+.++|+++.. .+||+++|+ ... .+.+|+
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~-----~~~-~~~~d~ 227 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK-----EEF-FSKADA 227 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC-----HHH-HhhCCe
Confidence 56788877643 4699999 999999999999999999864 388999998 322 356899
Q ss_pred eEEEEe
Q 013511 291 VDVVKL 296 (441)
Q Consensus 291 v~vl~l 296 (441)
+.++.-
T Consensus 228 i~~~~~ 233 (247)
T cd03275 228 LVGVYR 233 (247)
T ss_pred EEEEEe
Confidence 877743
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.11 E-value=2.3e-10 Score=106.01 Aligned_cols=143 Identities=14% Similarity=0.172 Sum_probs=78.7
Q ss_pred CCCCCCCCC-EEEEECCCCCChhHHHHHHH-HHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccce
Q 013511 122 KDSDASQGP-RVIVVGPTDSGKSTLSRMLL-SWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPL 199 (441)
Q Consensus 122 vsl~i~~G~-~v~IvGpnGsGKSTLlr~L~-g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~ 199 (441)
+++++..|+ +++|+||||||||||+|+|+ +. +-+..|.. +|.. .. ..+++..+.
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~------------~~~~~G~~-vp~~-------~~----~~~~~~~~~ 75 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLGLLT------------LMAQSGLP-IPAA-------EG----SSLPVFENI 75 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHHHHH------------HHHHcCCC-cccc-------cc----ccCcCccEE
Confidence 688889995 69999999999999999998 32 22222211 1110 00 001111111
Q ss_pred EEEec-ccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHHH-HHHHHcCC--CEEEEeCC
Q 013511 200 VYFFG-HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELLL-HAIDTFKA--NVVLVLGQ 274 (441)
Q Consensus 200 ~~~~g-~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l~-~li~~~~~--~~Vivi~h 274 (441)
...++ ..++.+++..+...+.++.... ..+ .+..++++|| ++++|+.....+. .+++.+.. .+++++||
T Consensus 76 ~~~lg~~~~l~~~~s~fs~g~~~~~~i~-~~~-----~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH 149 (200)
T cd03280 76 FADIGDEQSIEQSLSTFSSHMKNIARIL-QHA-----DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTH 149 (200)
T ss_pred EEecCchhhhhcCcchHHHHHHHHHHHH-HhC-----CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 11222 1223333333333333332221 112 2346899999 9999998877664 46666542 38889999
Q ss_pred chhhHHHHHHhcCCCCeEEEEecCCCCee
Q 013511 275 EKLFSMLRDVLKNRPNVDVVKLQKSGGVV 303 (441)
Q Consensus 275 ~~l~~~l~~~~~~~~~v~vl~l~~~g~vv 303 (441)
+.. + .+.++++.++ ++|.+.
T Consensus 150 ~~~---l---~~~~d~~~~l---~~g~l~ 169 (200)
T cd03280 150 YGE---L---KAYAYKREGV---ENASME 169 (200)
T ss_pred HHH---H---HHHHhcCCCe---EEEEEE
Confidence 832 2 2345666566 455554
No 398
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.11 E-value=1.5e-10 Score=134.04 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+||+||+. ++|+|| +++||+...+.+.++++++.. .+||+++|+ +... +.+|+
T Consensus 807 ~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd-----l~~i-~~aDr 880 (1809)
T PRK00635 807 LSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN-----MHVV-KVADY 880 (1809)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC-----HHHH-HhCCE
Confidence 3458999987754 499999 999999999999999998853 389999999 6655 67899
Q ss_pred eEEEEec---CCCCeeeCCh
Q 013511 291 VDVVKLQ---KSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~---~~g~vv~~~~ 307 (441)
+.++.-. ..|.++..++
T Consensus 881 Vi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 881 VLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred EEEEccCCCCCCCEEEEeCC
Confidence 8877210 1466666654
No 399
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.10 E-value=3.1e-11 Score=111.54 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=51.4
Q ss_pred HHHHhccCcccee--------------eeEEEeC-CCCCCchhHHHHHHHHHHcC-C----CEEEEeCCchhhHHHHHHh
Q 013511 226 LERQFNGNAESRA--------------AGMVINT-MGWIEGVGYELLLHAIDTFK-A----NVVLVLGQEKLFSMLRDVL 285 (441)
Q Consensus 226 ~~~~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l~~li~~~~-~----~~Vivi~h~~l~~~l~~~~ 285 (441)
....||+|+++|+ .++|+|| ++++|......+.+++++.. . .+|++++|+ +..+.
T Consensus 106 ~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~-----~~~i~ 180 (198)
T cd03276 106 DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQD-----ISGLA 180 (198)
T ss_pred cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCc-----ccccc
Confidence 4456788887643 3499999 99999999998888887752 2 278889999 77665
Q ss_pred cCCCCeEEEEecCC
Q 013511 286 KNRPNVDVVKLQKS 299 (441)
Q Consensus 286 ~~~~~v~vl~l~~~ 299 (441)
.. |+|.|++..++
T Consensus 181 ~~-d~v~~~~~~~~ 193 (198)
T cd03276 181 SS-DDVKVFRMKDP 193 (198)
T ss_pred cc-cceeEEEecCC
Confidence 44 89999976443
No 400
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.09 E-value=1.5e-10 Score=128.36 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=56.2
Q ss_pred HHHhccCcccee-------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRA-------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~-------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+|++||+ .++|+|| +++||+...+.+.++++++.. .+||+++|+ +... ..+|+
T Consensus 828 ~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~-----~~~i-~~aD~ 901 (943)
T PRK00349 828 ATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHN-----LDVI-KTADW 901 (943)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC-----HHHH-HhCCE
Confidence 355899998764 4699999 999999999999999998853 499999999 5544 46888
Q ss_pred eEEEEec---CCCCeeeCCh
Q 013511 291 VDVVKLQ---KSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l~---~~g~vv~~~~ 307 (441)
+.++.-. +.|.++..++
T Consensus 902 ii~Lgp~~G~~~G~Iv~~Gt 921 (943)
T PRK00349 902 IIDLGPEGGDGGGEIVATGT 921 (943)
T ss_pred EEEecCCcCCCCCEEEEeCC
Confidence 7666100 3567777665
No 401
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=8.8e-12 Score=125.65 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=89.7
Q ss_pred hhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 100 VSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 100 l~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
+...+.+.+|+++. .+. +.++++..|.++++||+||+|||||+|+|++..+ +.-|.+-++ -|+..
T Consensus 81 i~~~~fdLa~G~k~--LL~--~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v---------~~f~veqE~--~g~~t 145 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKI--LLN--KANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV---------SGFHVEQEV--RGDDT 145 (582)
T ss_pred eeeeeeeeeecchh--hhc--CCceeeecccccceeCCCCCcHHHHHHHHHhcCc---------CccCchhhe--eccch
Confidence 44567777888774 443 3788999999999999999999999999999411 111211111 11110
Q ss_pred eeeccCcCCCC---CCCCcccceEEEecccCcc-CCHHHHHHH------HHHHHHHHHHHhccCcc----------ceee
Q 013511 180 ATPIELPIDPV---EGIPLEMPLVYFFGHATPS-NNVELYKVL------VKELAQMLERQFNGNAE----------SRAA 239 (441)
Q Consensus 180 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~tv~-en~~~~~~~------~~~l~~~~~~~ls~g~~----------~r~~ 239 (441)
.... ..+... ..+..... . +... +-...+... ..++.......||||=+ ++..
T Consensus 146 ~~~~-~~l~~D~~~~dfl~~e~--~----l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pD 218 (582)
T KOG0062|consen 146 EALQ-SVLESDTERLDFLAEEK--E----LLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPD 218 (582)
T ss_pred HHHh-hhhhccHHHHHHHHhhh--h----hhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCC
Confidence 0000 000000 00000000 0 0000 001111111 12233344455777654 3455
Q ss_pred eEEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCch-hhHHH
Q 013511 240 GMVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEK-LFSML 281 (441)
Q Consensus 240 ~lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~-l~~~l 281 (441)
+|+||| |+.||..+...|...+.... .|+++++||+ +++..
T Consensus 219 lLLLDEPTNhLDv~av~WLe~yL~t~~-~T~liVSHDr~FLn~V 261 (582)
T KOG0062|consen 219 LLLLDEPTNHLDVVAVAWLENYLQTWK-ITSLIVSHDRNFLNTV 261 (582)
T ss_pred EEeecCCcccchhHHHHHHHHHHhhCC-ceEEEEeccHHHHHHH
Confidence 699999 89999999999999999987 6778888884 44433
No 402
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.07 E-value=1.4e-09 Score=100.80 Aligned_cols=125 Identities=17% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEE
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVY 201 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (441)
.++++..|++++|+||||||||||+|+|++.. +-...|... |+.. ..+++......
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~-----------~~~~~g~~~-~~~~------------~~i~~~dqi~~ 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAV-----------LLAQIGCFV-PAES------------ASIPLVDRIFT 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHH-----------HHHHcCCCc-cccc------------cccCCcCEEEE
Confidence 45667789999999999999999999999652 212223221 2210 01111111111
Q ss_pred Ee-cccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHH-HHHHHHcC--CCEEEEeCCch
Q 013511 202 FF-GHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELL-LHAIDTFK--ANVVLVLGQEK 276 (441)
Q Consensus 202 ~~-g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l-~~li~~~~--~~~Vivi~h~~ 276 (441)
.+ ...++.++...+...+.++.... ... ....++|+|| ++++|+.....+ ..+++.+. ..++|++||+.
T Consensus 78 ~~~~~d~i~~~~s~~~~e~~~l~~i~-~~~-----~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 78 RIGAEDSISDGRSTFMAELLELKEIL-SLA-----TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred EecCcccccCCceeHHHHHHHHHHHH-Hhc-----cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 11 12233333333333333332221 111 1346899999 899999766544 44555543 23888899983
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.06 E-value=2.9e-10 Score=113.36 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=91.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC-Cc----------eeeeeeccCcCCCCCCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI-PG----------CIAATPIELPIDPVEGIP 194 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~-~G----------~~~~~~~~~~~~~~~~~~ 194 (441)
..+|.+++|+|+||-||||.+|+|+|. +.|.=|+.-= |+ +.................
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGe------------l~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v 164 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGE------------LKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAV 164 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCc------------cccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCccee
Confidence 478999999999999999999999999 7887665421 11 100000000000000011
Q ss_pred cccceEEEecc---cCccCCHHH------HHHH-----HHHHHHHHHHHhccCccceeee----------EEEeC-CCCC
Q 013511 195 LEMPLVYFFGH---ATPSNNVEL------YKVL-----VKELAQMLERQFNGNAESRAAG----------MVINT-MGWI 249 (441)
Q Consensus 195 ~~~~~~~~~g~---~tv~en~~~------~~~~-----~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~l 249 (441)
..+|..-+.+. -++.+-+.- +... +..+.++-...||||+.||+++ .++|| ++||
T Consensus 165 ~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyL 244 (591)
T COG1245 165 HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYL 244 (591)
T ss_pred cchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccc
Confidence 11110000000 011111110 0011 2234455667899999999876 99999 9999
Q ss_pred CchhHHHHHHHHHHcCCC--EEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 250 EGVGYELLLHAIDTFKAN--VVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 250 D~~~~~~l~~li~~~~~~--~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
|...+-...++|+++..+ .|+|+.|| |.-.--++|-|.|+
T Consensus 245 Di~qRl~~ar~Irel~~~~k~ViVVEHD-----LavLD~lsD~vhI~ 286 (591)
T COG1245 245 DIRQRLNAARVIRELAEDGKYVIVVEHD-----LAVLDYLSDFVHIL 286 (591)
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEech-----HHHHHHhhheeEEE
Confidence 998888888899998763 99999999 55443456777666
No 404
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.8e-10 Score=116.40 Aligned_cols=180 Identities=18% Similarity=0.144 Sum_probs=107.4
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.+++.++.+.|.......+.+ +++..+.-.+++++|+||+||||++|++.+- +.|..|.+.+.+..
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~--~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~------------l~~~rgi~~~~~r~ 427 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQ--LGLDRESDSRISRVGENGDGKSTLLKILKGD------------LTPTRGIVGRHPRL 427 (582)
T ss_pred eeEEEeeeccCCCcchhhhhc--cCCccchhhhhheeccCchhHHHHHHHHhcc------------CCcccceeeecccc
Confidence 334444444444332122322 6666778889999999999999999999998 88888877665432
Q ss_pred eeee-ccCcCCCCCCC-CcccceEEEecccCccCCHHHHHHHH------HHHHHHHHHHhccCccceeee----------
Q 013511 179 AATP-IELPIDPVEGI-PLEMPLVYFFGHATPSNNVELYKVLV------KELAQMLERQFNGNAESRAAG---------- 240 (441)
Q Consensus 179 ~~~~-~~~~~~~~~~~-~~~~~~~~~~g~~tv~en~~~~~~~~------~~l~~~~~~~ls~g~~~r~~~---------- 240 (441)
-... .+...+...-. .-..-....|+..+.++ +++.+ ..++..-...|||||+.|+.+
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee----~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Phl 503 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEE----IRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHL 503 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHH----HHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcE
Confidence 1110 00000000000 00000001111111111 11111 123333345699999987765
Q ss_pred EEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeC
Q 013511 241 MVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSR 305 (441)
Q Consensus 241 lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~ 305 (441)
||||| |+.||-.+.+-|...|+.|+. -||+++|+ .+-.-..|+.+-++ ++|.+...
T Consensus 504 LVLDEPTNhLD~dsl~AL~~Al~~F~G-GVv~VSHd-----~~fi~~~c~E~Wvv---e~g~vt~i 560 (582)
T KOG0062|consen 504 LVLDEPTNHLDRDSLGALAKALKNFNG-GVVLVSHD-----EEFISSLCKELWVV---EDGKVTPI 560 (582)
T ss_pred EEecCCCccccHHHHHHHHHHHHhcCC-cEEEEECc-----HHHHhhcCceeEEE---cCCcEEee
Confidence 99999 999999999999999999986 45566787 33333468888888 88887654
No 405
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.05 E-value=2.1e-10 Score=107.23 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=49.5
Q ss_pred HHHHhccCcccee--------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC----CEEEEeCCchhhHHHHHHhc
Q 013511 226 LERQFNGNAESRA--------------AGMVINT-MGWIEGVGYELLLHAIDTFKA----NVVLVLGQEKLFSMLRDVLK 286 (441)
Q Consensus 226 ~~~~ls~g~~~r~--------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~----~~Vivi~h~~l~~~l~~~~~ 286 (441)
....||+|++|+. .++|+|| ++++|+.....+.+++.++.. .++++++|+ +....+
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~-----~~~~~~ 197 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK-----LLPGLN 197 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh-----hccCCc
Confidence 3456777777643 3599999 999999999999999988743 268889998 666666
Q ss_pred CCCCeEEEEe
Q 013511 287 NRPNVDVVKL 296 (441)
Q Consensus 287 ~~~~v~vl~l 296 (441)
.++++.++.+
T Consensus 198 ~~~~~~v~~l 207 (213)
T cd03277 198 YHEKMTVLCV 207 (213)
T ss_pred ccCceEEEEE
Confidence 7776666544
No 406
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=5.3e-10 Score=123.85 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=55.0
Q ss_pred HHHhccCcccee-------------eeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCC
Q 013511 227 ERQFNGNAESRA-------------AGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPN 290 (441)
Q Consensus 227 ~~~ls~g~~~r~-------------~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~ 290 (441)
...||+|++||+ .++|+|| +++||+...+.+.++++++.. .+||+++|+ +... +.+|+
T Consensus 826 ~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~-----~~~i-~~aD~ 899 (924)
T TIGR00630 826 ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN-----LDVI-KTADY 899 (924)
T ss_pred cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC-----HHHH-HhCCE
Confidence 355888988765 3599999 999999999999999998853 499999999 5544 45888
Q ss_pred eEEEEe---cCCCCeeeCCh
Q 013511 291 VDVVKL---QKSGGVVSRNS 307 (441)
Q Consensus 291 v~vl~l---~~~g~vv~~~~ 307 (441)
+.++.- .+.|.++..++
T Consensus 900 ii~Lgp~~G~~gG~iv~~G~ 919 (924)
T TIGR00630 900 IIDLGPEGGDGGGTIVASGT 919 (924)
T ss_pred EEEecCCccCCCCEEEEeCC
Confidence 766610 02556665554
No 407
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.95 E-value=3.4e-09 Score=102.21 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=81.2
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeecc-CcCCCCCCCCcccceEEEecccCc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIE-LPIDPVEGIPLEMPLVYFFGHATP 208 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~tv 208 (441)
.-++|+||||||||||+++|++. +.|++|++.++|........ ..+... +... |....+..+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~------------~~~~~G~i~~~g~~v~~~d~~~ei~~~--~~~~-~q~~~~~r~~v 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI------------LSTGISQLGLRGKKVGIVDERSEIAGC--VNGV-PQHDVGIRTDV 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc------------cCCCCceEEECCEEeecchhHHHHHHH--hccc-ccccccccccc
Confidence 57899999999999999999999 99999999999987642211 111111 1111 22234556777
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeCCCCCCchhHHHHHHHHHHcCC-CEEEEeCCchhhHHHHH----
Q 013511 209 SNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINTMGWIEGVGYELLLHAIDTFKA-NVVLVLGQEKLFSMLRD---- 283 (441)
Q Consensus 209 ~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE~~~lD~~~~~~l~~li~~~~~-~~Vivi~h~~l~~~l~~---- 283 (441)
.+|..-.. .+ .... .+ ....++|+||++ ..+.+..+++.++. .++++++|+....++.+
T Consensus 177 ~~~~~k~~-~~---~~~i---~~----~~P~villDE~~-----~~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~ 240 (270)
T TIGR02858 177 LDGCPKAE-GM---MMLI---RS----MSPDVIVVDEIG-----REEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVF 240 (270)
T ss_pred cccchHHH-HH---HHHH---Hh----CCCCEEEEeCCC-----cHHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHH
Confidence 77643321 11 1111 11 134589999954 23445555555543 38888899754433321
Q ss_pred --H--hcCCCCeEEE
Q 013511 284 --V--LKNRPNVDVV 294 (441)
Q Consensus 284 --~--~~~~~~v~vl 294 (441)
. ...++++.++
T Consensus 241 ~~l~~~~~~~r~i~L 255 (270)
T TIGR02858 241 KELIENEAFERYVVL 255 (270)
T ss_pred HHHHhcCceEEEEEE
Confidence 1 2456888777
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.95 E-value=9.3e-10 Score=111.37 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=87.8
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee-eccCcCCCCCCCC-cccc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT-PIELPIDPVEGIP-LEMP 198 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~-~~~~~~~~~~~~~-~~~~ 198 (441)
.++|.+++|--++|+||||||||+|.|+|.|+ .+..+|.+..|-..--- ..++|. .+.+ +..|
T Consensus 500 ~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL------------WPvy~g~L~~P~~~~mFYIPQRPY---ms~gtlRDQ 564 (728)
T KOG0064|consen 500 KLTFQIEPGMHLLITGPNGCGKSSLFRILGGL------------WPVYNGLLSIPRPNNIFYIPQRPY---MSGGTLRDQ 564 (728)
T ss_pred ceeEEecCCceEEEECCCCccHHHHHHHHhcc------------CcccCCeeecCCCcceEeccCCCc---cCcCcccce
Confidence 37899999999999999999999999999999 78778877765532111 111111 1100 1111
Q ss_pred eEEEecccCccCCHH---------HHHHH--HHHHH---------HHHHHHhccCccceeee----------EEEeC-CC
Q 013511 199 LVYFFGHATPSNNVE---------LYKVL--VKELA---------QMLERQFNGNAESRAAG----------MVINT-MG 247 (441)
Q Consensus 199 ~~~~~g~~tv~en~~---------~~~~~--~~~l~---------~~~~~~ls~g~~~r~~~----------lIlDE-~~ 247 (441)
-.|++ |..+.-. -.+.. +..++ ......||+|++||... .++|| |+
T Consensus 565 --IIYPd-S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 565 --IIYPD-SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred --eecCC-cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 22332 1111000 00000 11111 12335699999999875 89999 89
Q ss_pred CCCchhHHHHHHHHHHcCCCEEEEeCCc-hhhHHHH
Q 013511 248 WIEGVGYELLLHAIDTFKANVVLVLGQE-KLFSMLR 282 (441)
Q Consensus 248 ~lD~~~~~~l~~li~~~~~~~Vivi~h~-~l~~~l~ 282 (441)
.+.+.....+.++++.+..+. +-++|. .++..-.
T Consensus 642 AvsidvE~~i~~~ak~~gi~l-lsithrpslwk~h~ 676 (728)
T KOG0064|consen 642 AVSIDVEGKIFQAAKDAGISL-LSITHRPSLWKYHT 676 (728)
T ss_pred ccccchHHHHHHHHHhcCceE-EEeecCccHHHHHH
Confidence 988877788889999887754 444555 5555433
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=3.4e-09 Score=117.79 Aligned_cols=164 Identities=16% Similarity=0.197 Sum_probs=116.6
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC---CCCcccCCceeeeeeccCcCCCCCCCCccc
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI---GQGAITIPGCIAATPIELPIDPVEGIPLEM 197 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp---~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~ 197 (441)
+++.-+++|+.++++||.|||||||++.|+|- ++- .+|+|+++|........ +....+..
T Consensus 133 ~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~------------~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~ 195 (1391)
T KOG0065|consen 133 DISGIIKPGEMTLVLGPPGSGKTTLLKALAGK------------LDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNS 195 (1391)
T ss_pred CcceeEcCCceEEEecCCCCchHHHHHHHhCC------------CcccccCCCceeECCCccccccc-----CceEEecc
Confidence 48999999999999999999999999999997 332 35689999964432221 33345555
Q ss_pred ceEEEecccCccCCHHHHHHHH------------HH---HH------------------HHHHHHhccCccceeee----
Q 013511 198 PLVYFFGHATPSNNVELYKVLV------------KE---LA------------------QMLERQFNGNAESRAAG---- 240 (441)
Q Consensus 198 ~~~~~~g~~tv~en~~~~~~~~------------~~---l~------------------~~~~~~ls~g~~~r~~~---- 240 (441)
+.-.+++++|+++-++|..++- +. .. +...+..||||+.|+++
T Consensus 196 e~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~ 275 (1391)
T KOG0065|consen 196 EQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275 (1391)
T ss_pred ccccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee
Confidence 5567899999999998865430 00 11 12223489999999886
Q ss_pred ------EEEeC-CCCCCchhHHHHHHHHHHcCC---CEEEE-eCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCChHH
Q 013511 241 ------MVINT-MGWIEGVGYELLLHAIDTFKA---NVVLV-LGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRNSKV 309 (441)
Q Consensus 241 ------lIlDE-~~~lD~~~~~~l~~li~~~~~---~~Viv-i~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~~~~ 309 (441)
+..|| +.+||....-++.+.++.+.. .+.++ +.+. -.+.+.+-|.|.++ ..|..+..++..
T Consensus 276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~-----s~~~~~lFD~v~lL---~eG~~iy~Gp~d 347 (1391)
T KOG0065|consen 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQP-----SPEIYDLFDDVILL---SEGYQIYQGPRD 347 (1391)
T ss_pred ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccC-----ChHHHHhhhheeee---eccceEEeccHH
Confidence 88999 999999877777777766532 24333 4443 34445556888888 899999888643
No 410
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.90 E-value=1.2e-08 Score=95.57 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
+++++..+ ++++|+||||||||||+|++++..+ ....|. .+|.. ...+.+. .
T Consensus 23 ~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~-----------l~~~g~-~vp~~------------~~~i~~~---~ 74 (216)
T cd03284 23 DTELDPER-QILLITGPNMAGKSTYLRQVALIAL-----------LAQIGS-FVPAS------------KAEIGVV---D 74 (216)
T ss_pred eEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH-----------HhccCC-eeccc------------cceecce---e
Confidence 46776665 8999999999999999999998621 111121 11110 0112222 2
Q ss_pred EEecccCccCCHHHHHHH----HHHHHHHHHHHhccCccceeeeEEEeC----CCCCCchhH-HHHHHHHHHcCCCEEEE
Q 013511 201 YFFGHATPSNNVELYKVL----VKELAQMLERQFNGNAESRAAGMVINT----MGWIEGVGY-ELLLHAIDTFKANVVLV 271 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~~~----~~~l~~~~~~~ls~g~~~r~~~lIlDE----~~~lD~~~~-~~l~~li~~~~~~~Viv 271 (441)
.+|.+++..+|+...... +.++..... + . ...+++|+|| ++++|+... ..+.+.+.+....++|+
T Consensus 75 ~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~-~-~----~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~ 148 (216)
T cd03284 75 RIFTRIGASDDLAGGRSTFMVEMVETANILN-N-A----TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLF 148 (216)
T ss_pred eEeccCCchhhhccCcchHHHHHHHHHHHHH-h-C----CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEE
Confidence 356778888877654322 122222111 1 1 2346899999 445665432 33444444432347888
Q ss_pred eCCchhhHHH
Q 013511 272 LGQEKLFSML 281 (441)
Q Consensus 272 i~h~~l~~~l 281 (441)
+||+.....+
T Consensus 149 ~TH~~~l~~l 158 (216)
T cd03284 149 ATHYHELTEL 158 (216)
T ss_pred EeCcHHHHHH
Confidence 8998543333
No 411
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.86 E-value=5.1e-09 Score=91.25 Aligned_cols=48 Identities=42% Similarity=0.601 Sum_probs=42.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccE-EEeccCCCCcccCCce
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPT-FVDLDIGQGAITIPGC 177 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~-~vDldp~~G~i~~~G~ 177 (441)
++++|+|++|||||||++.|++++.++|++|. +.|.+++++++..||+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCc
Confidence 58999999999999999999999999999998 7899999999999999
No 412
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.84 E-value=3.1e-08 Score=91.90 Aligned_cols=34 Identities=26% Similarity=0.230 Sum_probs=31.2
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAA 154 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~ 154 (441)
+++++...|++++|.||||+||||++|++++..+
T Consensus 21 ~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~ 54 (204)
T cd03282 21 DIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI 54 (204)
T ss_pred eeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4888899999999999999999999999998854
No 413
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.84 E-value=1.1e-08 Score=91.57 Aligned_cols=52 Identities=10% Similarity=-0.019 Sum_probs=38.0
Q ss_pred eeeeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 237 RAAGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 237 r~~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+..++|+|| +.++|+.....+.+.+.++.. .+++++||+. ... ..+|++..+
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~-----~~~-~~~d~~~~l 153 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP-----ELA-ELADKLIHI 153 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-----HHH-HhhhhEEEE
Confidence 456899999 999999988888887776633 3888999983 222 235776666
No 414
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.83 E-value=2.6e-08 Score=93.18 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=66.4
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccce-EEEecccCc
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPL-VYFFGHATP 208 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~tv 208 (441)
.+++|.||||+|||||+|.++..+. + ...|.+.+..... +.+..+. ..+-...++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~----------l-a~~G~~v~a~~~~-------------~~~~d~i~~~l~~~~si 85 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVF----------L-AHIGSFVPADSAT-------------IGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH----------H-HhCCCeeEcCCcE-------------EeeeeeeeeeeCCccCh
Confidence 7899999999999999999985421 2 3334432211100 0111111 112223355
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCch-hHHHHHHHHHHcCC-----CEEEEeCCc
Q 013511 209 SNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGV-GYELLLHAIDTFKA-----NVVLVLGQE 275 (441)
Q Consensus 209 ~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~-~~~~l~~li~~~~~-----~~Vivi~h~ 275 (441)
.++...+...+.++..... +.. ..+++|+|| +.++|+. +...+..+++.+.. ..+|++||+
T Consensus 86 ~~~~S~f~~el~~l~~~l~--~~~----~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~ 153 (213)
T cd03281 86 SSGQSAFMIDLYQVSKALR--LAT----RRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHF 153 (213)
T ss_pred hhccchHHHHHHHHHHHHH--hCC----CCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCh
Confidence 5555555555555443322 222 246899999 8999985 45555566666531 278889998
No 415
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.78 E-value=6.2e-08 Score=90.98 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=75.6
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccce-
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPL- 199 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~- 199 (441)
++++.+.+|++++|.||||+||||++|++++.. +-+..|.+. |+.... +.+....
T Consensus 23 ~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~-----------~la~~G~~v-~a~~~~------------~~~~~~i~ 78 (222)
T cd03287 23 DIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT-----------IMAQIGSFV-PASSAT------------LSIFDSVL 78 (222)
T ss_pred eEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH-----------HHHhCCCEE-EcCceE------------EeccceEE
Confidence 488888999999999999999999999999953 445556543 332110 1111111
Q ss_pred EEEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchh-HHHHHHHHHHcC---CCEEEEeCC
Q 013511 200 VYFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVG-YELLLHAIDTFK---ANVVLVLGQ 274 (441)
Q Consensus 200 ~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~-~~~l~~li~~~~---~~~Vivi~h 274 (441)
..+-..-++.++...+...+.++...+.. . ...+++|+|| ..+.++.. ......+++.+. ..++|++||
T Consensus 79 ~~~~~~d~~~~~~StF~~e~~~~~~il~~-~-----~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH 152 (222)
T cd03287 79 TRMGASDSIQHGMSTFMVELSETSHILSN-C-----TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTH 152 (222)
T ss_pred EEecCccccccccchHHHHHHHHHHHHHh-C-----CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcc
Confidence 11112224445555555555555443321 1 1247899999 55665432 222233444432 348888999
Q ss_pred chhhHHHH
Q 013511 275 EKLFSMLR 282 (441)
Q Consensus 275 ~~l~~~l~ 282 (441)
+.....+.
T Consensus 153 ~~~l~~~~ 160 (222)
T cd03287 153 YPSLGEIL 160 (222)
T ss_pred cHHHHHHH
Confidence 95444443
No 416
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.76 E-value=1.1e-07 Score=86.43 Aligned_cols=52 Identities=10% Similarity=0.051 Sum_probs=40.0
Q ss_pred eeeeEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeEEE
Q 013511 237 RAAGMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVDVV 294 (441)
Q Consensus 237 r~~~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~vl 294 (441)
+..++|+|| ++.+|+...+.+.+.++++.. .++|+++|+ .... ..+|++..+
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~-----~~~~-~~adrvi~i 170 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK-----KEMF-ENADKLIGV 170 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC-----HHHH-hhCCeEEEE
Confidence 346899999 999999999999899888743 388899998 3332 357887665
No 417
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.73 E-value=2.1e-09 Score=88.57 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.7
Q ss_pred hccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHH
Q 013511 116 AKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLL 150 (441)
Q Consensus 116 ~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~ 150 (441)
++++ ++|++.+|++++|+||+|||||||+++|.
T Consensus 4 aL~~--vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 4 SLHG--VLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEe--eEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 5554 89999999999999999999999999965
No 418
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=9.1e-08 Score=98.27 Aligned_cols=156 Identities=20% Similarity=0.226 Sum_probs=92.3
Q ss_pred hccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeee---eccCcCCCCCC
Q 013511 116 AKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAAT---PIELPIDPVEG 192 (441)
Q Consensus 116 ~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~---~~~~~~~~~~~ 192 (441)
+++. + +.+.+|++++|+|+||+|||||+++|+++ .+++.|.|.+.|..... .....+.. .+
T Consensus 148 vid~--l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~------------~~~~~gvI~~~Gerg~ev~e~~~~~l~~-~~ 211 (438)
T PRK07721 148 AIDS--L-LTVGKGQRVGIFAGSGVGKSTLMGMIARN------------TSADLNVIALIGERGREVREFIERDLGP-EG 211 (438)
T ss_pred hhhe--e-eeecCCcEEEEECCCCCCHHHHHHHHhcc------------cCCCeEEEEEEecCCccHHHHHHhhcCh-hh
Confidence 4543 6 88999999999999999999999999999 88999988876543211 11111110 11
Q ss_pred CCcccceEEEecccCccCCHHHHHHHHHHHHHHHHHHhc-cCccceeeeEEEe-----------------C---CCCCCc
Q 013511 193 IPLEMPLVYFFGHATPSNNVELYKVLVKELAQMLERQFN-GNAESRAAGMVIN-----------------T---MGWIEG 251 (441)
Q Consensus 193 ~~~~~~~~~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls-~g~~~r~~~lIlD-----------------E---~~~lD~ 251 (441)
+ .. ...++. + .+....-+......+-...+.+. .|. --++++| | +.++|+
T Consensus 212 l--~r-~v~vv~--~-~~~~~~~r~~~~~~a~~iAEyfr~~g~---~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp 282 (438)
T PRK07721 212 L--KR-SIVVVA--T-SDQPALMRIKGAYTATAIAEYFRDQGL---NVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTP 282 (438)
T ss_pred h--cC-eEEEEE--C-CCCCHHHHHHHHHHHHHHHHHHHHCCC---cEEEEEeChHHHHHHHHHHHHhcCCCCccccCCH
Confidence 0 11 111221 1 12221111111111222222221 122 2245555 6 567899
Q ss_pred hhHHHHHHHHHHcCC----C-----EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 252 VGYELLLHAIDTFKA----N-----VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 252 ~~~~~l~~li~~~~~----~-----~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
.....+.+++++... . +|++.+|+ +.+ ..|+++.++ .+|+++...
T Consensus 283 ~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hd-----m~e--~i~d~v~~i---~dG~Ivls~ 336 (438)
T PRK07721 283 SVFAILPKLLERTGTNASGSITAFYTVLVDGDD-----MNE--PIADTVRGI---LDGHFVLDR 336 (438)
T ss_pred HHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCC-----CCc--hhhhhEEEe---cCEEEEEec
Confidence 888899999988762 2 77888999 654 467888877 777776543
No 419
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.59 E-value=8.5e-07 Score=81.06 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=60.7
Q ss_pred EEEECCCCCChhHHHHHHH-HHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEec-ccCcc
Q 013511 132 VIVVGPTDSGKSTLSRMLL-SWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG-HATPS 209 (441)
Q Consensus 132 v~IvGpnGsGKSTLlr~L~-g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~tv~ 209 (441)
++|.|||++|||||+|.++ +. .-...|... |+... .+.+.......++ ..+..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~------------~la~~G~~v-~a~~~------------~~~~~d~il~~~~~~d~~~ 56 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV------------IMAQIGSFV-PAESA------------ELPVFDRIFTRIGASDSLA 56 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH------------HHHHhCCCe-eehhe------------EecccceEEEEeCCCCchh
Confidence 6799999999999999998 44 222333322 22100 0111111111122 11222
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhH-HHHHHHHHHcC---CCEEEEeCCchh
Q 013511 210 NNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGY-ELLLHAIDTFK---ANVVLVLGQEKL 277 (441)
Q Consensus 210 en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~-~~l~~li~~~~---~~~Vivi~h~~l 277 (441)
++...+...+.++...... . ...+++|+|| +.++|+... .....+++.+. ..+++++||+..
T Consensus 57 ~~~s~fs~~~~~l~~~l~~-~-----~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 57 QGLSTFMVEMKETANILKN-A-----TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred ccccHHHHHHHHHHHHHHh-C-----CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 2332333333343333221 1 1346899999 899999754 44456666553 237888899843
No 420
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.58 E-value=2.1e-08 Score=102.18 Aligned_cols=56 Identities=9% Similarity=0.144 Sum_probs=46.4
Q ss_pred hhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC-cccCCceeeee
Q 013511 110 EGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG-AITIPGCIAAT 181 (441)
Q Consensus 110 ~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G-~i~~~G~~~~~ 181 (441)
+..-..++++ +++++.+|++++||||||||||||+| +++ ..|.+| +|.++|+.+..
T Consensus 15 e~~l~~vL~~--Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l------------~~~~sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 15 QTDLERILVK--FNKELPSSSLLFLCGSSGDGKSEILA--ENK------------RKFSEGYEFFLDATHSFS 71 (504)
T ss_pred HHHHHHHHhC--CceeecCCCEEEEECCCCCCHHHHHh--cCC------------CCCCCCCEEEECCEECCC
Confidence 3333356765 99999999999999999999999999 676 778888 69999987754
No 421
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.56 E-value=2.2e-07 Score=87.47 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=28.7
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++++..++++++|.||||+|||||+|+++-.
T Consensus 22 ~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 22 DVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred eEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence 47888888999999999999999999998754
No 422
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=3.4e-07 Score=89.12 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=44.4
Q ss_pred eeeeEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 237 RAAGMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 237 r~~~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
+..++|+|| ++++|+.....+.++++++... ++|+++|+ +. ....++++.++.-...|
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~-----~~-~~~~~d~~~~l~~~~~~ 251 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHL-----PQ-VAAMADNHFLVEKEVEG 251 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEech-----HH-HHHhcCcEEEEEEecCC
Confidence 345699999 9999999999999999988544 89999999 43 23568888777544343
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.53 E-value=1.6e-07 Score=93.38 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=87.1
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEeccc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFGHA 206 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 206 (441)
...+++..+|.||.|||||+++|+|. +.|++|.= +|-....-.. ..+..+.... ..+ + -+.
T Consensus 365 sdSeiivmlgEngtgkTTfi~mlag~------------~~pd~~~e-~p~lnVSykp-qkispK~~~t-vR~---l-l~~ 425 (592)
T KOG0063|consen 365 SDSEIIVMLGENGTGKTTFIRMLAGR------------LKPDEGGE-IPVLNVSYKP-QKISPKREGT-VRQ---L-LHT 425 (592)
T ss_pred CCceeEEEEccCCcchhHHHHHHhcC------------CCCCccCc-ccccceeccc-cccCccccch-HHH---H-HHH
Confidence 34568999999999999999999998 89987631 1221110111 1111111000 000 0 001
Q ss_pred Cc---cCCHHHHHHH-----HHHHHHHHHHHhccCccceeee----------EEEeC-CCCCCchhHHHHHHHHHHcC--
Q 013511 207 TP---SNNVELYKVL-----VKELAQMLERQFNGNAESRAAG----------MVINT-MGWIEGVGYELLLHAIDTFK-- 265 (441)
Q Consensus 207 tv---~en~~~~~~~-----~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~lD~~~~~~l~~li~~~~-- 265 (441)
.+ ..+..|.... ++++.++-.+.||+|+.||+++ .++|| .+.+|...+..-...++++-
T Consensus 426 kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh 505 (592)
T KOG0063|consen 426 KIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH 505 (592)
T ss_pred HhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh
Confidence 11 1122332222 3445566677899999999875 89999 67789877766666777762
Q ss_pred -CCEEEEeCCchhhHHHHHHhcCCCCeEEEE
Q 013511 266 -ANVVLVLGQEKLFSMLRDVLKNRPNVDVVK 295 (441)
Q Consensus 266 -~~~Vivi~h~~l~~~l~~~~~~~~~v~vl~ 295 (441)
..+-.++.|| +.-+--++|++.+..
T Consensus 506 akktafvVEhd-----fImaTYladrvivf~ 531 (592)
T KOG0063|consen 506 AKKTAFVVEHD-----FIMATYLADRVIVFE 531 (592)
T ss_pred ccchhhhhhhH-----HHHHHhhcceeEEEe
Confidence 2366667888 544444789988873
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.49 E-value=5.1e-07 Score=99.17 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=71.8
Q ss_pred CCCCCCCC-CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceE
Q 013511 122 KDSDASQG-PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLV 200 (441)
Q Consensus 122 vsl~i~~G-~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 200 (441)
+++.+..+ .+++|+||||+|||||+|++++.++ -+..|.. +|-... ..+++..+..
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l-----------~aq~G~~-Vpa~~~-----------~~~~~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL-----------MFQSGIP-IPANEH-----------SEIPYFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH-----------HHHhCCC-ccCCcc-----------ccccchhhee
Confidence 45666666 8999999999999999999999832 2223321 111000 0011111111
Q ss_pred EEec-ccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHH-HHHHHHcC--CCEEEEeCCc
Q 013511 201 YFFG-HATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELL-LHAIDTFK--ANVVLVLGQE 275 (441)
Q Consensus 201 ~~~g-~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l-~~li~~~~--~~~Vivi~h~ 275 (441)
..++ ..++.+++.-+...+.++.... ..+. ..+++|+|| ++++|+.....+ ..+++.+. ..+++++||+
T Consensus 371 ~~i~~~~si~~~LStfS~~m~~~~~il-~~~~-----~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~ 444 (771)
T TIGR01069 371 ADIGDEQSIEQNLSTFSGHMKNISAIL-SKTT-----ENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHY 444 (771)
T ss_pred eecChHhHHhhhhhHHHHHHHHHHHHH-HhcC-----CCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence 1111 2344455444444444333222 1111 247899999 889999776555 45666653 2378889998
Q ss_pred hhh
Q 013511 276 KLF 278 (441)
Q Consensus 276 ~l~ 278 (441)
...
T Consensus 445 ~eL 447 (771)
T TIGR01069 445 KEL 447 (771)
T ss_pred HHH
Confidence 543
No 425
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.49 E-value=1.3e-06 Score=78.11 Aligned_cols=158 Identities=15% Similarity=0.220 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce--eeeeeccCcCCCCCCCCcccceEEEecc
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC--IAATPIELPIDPVEGIPLEMPLVYFFGH 205 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 205 (441)
+-+++.|+|.||||||||+-.|+-. .| .++..|.=-+.|. .+.......+. .......+..+|+..
T Consensus 36 ~apIT~i~GENGsGKSTLLEaiA~~---~~-------~n~aGg~~n~~~~~~~s~s~l~~~~k--~~~~~k~~~g~FlRA 103 (233)
T COG3910 36 RAPITFITGENGSGKSTLLEAIAAG---MG-------FNAAGGGKNFKGELDASHSALVDYAK--LHKRKKPPIGFFLRA 103 (233)
T ss_pred cCceEEEEcCCCccHHHHHHHHHhh---cc-------ccccCCCcCcCcccccccchHHHhHH--HhhcCCCCcceEEeh
Confidence 4589999999999999999988654 22 3443332222221 11011110000 001112334455554
Q ss_pred cCccCCHHHHHHHHHHHHH---HHHHHhccCcc---------ceeeeEEEeC-CCCCCchhHHHHHHHHHHcCCC--EEE
Q 013511 206 ATPSNNVELYKVLVKELAQ---MLERQFNGNAE---------SRAAGMVINT-MGWIEGVGYELLLHAIDTFKAN--VVL 270 (441)
Q Consensus 206 ~tv~en~~~~~~~~~~l~~---~~~~~ls~g~~---------~r~~~lIlDE-~~~lD~~~~~~l~~li~~~~~~--~Vi 270 (441)
.|.. |+.-|......-++ .--.+.|.|+- .+..+.|+|| -+.|.+.-+-.++.++..+... -+|
T Consensus 104 Es~y-n~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~I 182 (233)
T COG3910 104 ESFY-NVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQII 182 (233)
T ss_pred hHHH-HHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence 4433 33222222111000 00122333332 2235699999 7889998888888888887654 677
Q ss_pred EeCCchhhHHHHHHhcCCCCeEEEEecCCCCeeeCC
Q 013511 271 VLGQEKLFSMLRDVLKNRPNVDVVKLQKSGGVVSRN 306 (441)
Q Consensus 271 vi~h~~l~~~l~~~~~~~~~v~vl~l~~~g~vv~~~ 306 (441)
+.||... +--++...|..+..+| +-+++
T Consensus 183 iATHSPi-------LlAiP~A~I~~~~~~g-~~~~~ 210 (233)
T COG3910 183 IATHSPI-------LLAIPGAEIYEISESG-IEERD 210 (233)
T ss_pred EEecChh-------heeCCCcEEEEEecCC-ccccc
Confidence 7788732 1134666677775544 54443
No 426
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.47 E-value=6.8e-07 Score=84.57 Aligned_cols=43 Identities=23% Similarity=0.505 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCCCCChhHHH-HHHHHHHHHcCCccEEEeccCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLS-RMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLl-r~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+.+|++++|.|++|||||||+ +++++. ++.|++++|++.+-+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYVSTQLTT 64 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCH
Confidence 588999999999999999995 777774 5778888888865443
No 427
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.46 E-value=8.4e-07 Score=103.58 Aligned_cols=73 Identities=8% Similarity=0.140 Sum_probs=53.9
Q ss_pred HhccCccceee-------------eEEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 229 QFNGNAESRAA-------------GMVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 229 ~ls~g~~~r~~-------------~lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.||||+.||+. ++|+|| +.+|++...+.|+++++++.. ++||++.|+ ++-. +.||.+
T Consensus 1699 tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~-----~~~i-~~aD~i- 1771 (1809)
T PRK00635 1699 SLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHD-----PALL-KQADYL- 1771 (1809)
T ss_pred ccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCC-----HHHH-HhCCEE-
Confidence 48888887754 499999 999999999999999988853 499999999 5433 457774
Q ss_pred EEEecC-----CCCeeeCChHH
Q 013511 293 VVKLQK-----SGGVVSRNSKV 309 (441)
Q Consensus 293 vl~l~~-----~g~vv~~~~~~ 309 (441)
+-+.. .|.++..+++.
T Consensus 1772 -idlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1772 -IEMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred -EEcCCCcccCCCEEEEEeCHH
Confidence 44433 34567776643
No 428
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.42 E-value=3e-07 Score=86.21 Aligned_cols=55 Identities=5% Similarity=0.177 Sum_probs=37.0
Q ss_pred eEEEeC-CCCCCchhHHHHHHHHHHcCCC-EEEEeCCchhhHHHHHHhcCCCCeEEEEecCCC
Q 013511 240 GMVINT-MGWIEGVGYELLLHAIDTFKAN-VVLVLGQEKLFSMLRDVLKNRPNVDVVKLQKSG 300 (441)
Q Consensus 240 ~lIlDE-~~~lD~~~~~~l~~li~~~~~~-~Vivi~h~~l~~~l~~~~~~~~~v~vl~l~~~g 300 (441)
++|+|| .+.||+..+..+.++|+++..+ -+|++||++ ..+..+++...+...++|
T Consensus 161 ~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~------~~~~~a~~~~~v~~~~~g 217 (220)
T PF02463_consen 161 FLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNP------EMFEDADKLIGVTMVENG 217 (220)
T ss_dssp EEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-H------HHHTT-SEEEEEEECCTT
T ss_pred ccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccc
Confidence 489999 9999999999999999998754 677778882 233455665555443443
No 429
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.41 E-value=2e-06 Score=80.52 Aligned_cols=33 Identities=30% Similarity=0.352 Sum_probs=30.4
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
++++...+|++++|.|||++||||++++++..+
T Consensus 22 di~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 22 DVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred eeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 588888899999999999999999999999874
No 430
>PRK13695 putative NTPase; Provisional
Probab=98.32 E-value=1.2e-05 Score=72.52 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=24.7
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWK 159 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~ 159 (441)
+++|+|++|||||||++.|++.+...|.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 68999999999999999999986555544
No 431
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.30 E-value=1.1e-06 Score=85.30 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=28.6
Q ss_pred eeEEEeC-CCCCCchhHHHHHHHHHHcCCCEEEEeCCc
Q 013511 239 AGMVINT-MGWIEGVGYELLLHAIDTFKANVVLVLGQE 275 (441)
Q Consensus 239 ~~lIlDE-~~~lD~~~~~~l~~li~~~~~~~Vivi~h~ 275 (441)
.++++|| ++.+|+..++.+.+.++++. .+++.++|.
T Consensus 212 ~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~ 248 (270)
T cd03242 212 PVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDL 248 (270)
T ss_pred cEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCc
Confidence 4599999 99999999999999998875 455555444
No 432
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.30 E-value=4.7e-06 Score=73.27 Aligned_cols=38 Identities=39% Similarity=0.508 Sum_probs=34.0
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+++|.|++|+||||+++.+++.+.+.+..++|++.+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 47899999999999999999999888889999888654
No 433
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.25 E-value=6.2e-07 Score=82.01 Aligned_cols=40 Identities=30% Similarity=0.450 Sum_probs=35.6
Q ss_pred CCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 125 DASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 125 ~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.++.|+.++|+||||||||||++.|+++ ++++.|.+.+.+
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~------------i~~~~~~i~ied 60 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAF------------IPPDERIITIED 60 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhh------------cCCCCCEEEECC
Confidence 3578999999999999999999999999 888888887755
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.25 E-value=3.9e-06 Score=89.68 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=55.1
Q ss_pred HhccCccceeee-------------EEEeC-CCCCCchhHHHHHHHHHHcCC--CEEEEeCCchhhHHHHHHhcCCCCeE
Q 013511 229 QFNGNAESRAAG-------------MVINT-MGWIEGVGYELLLHAIDTFKA--NVVLVLGQEKLFSMLRDVLKNRPNVD 292 (441)
Q Consensus 229 ~ls~g~~~r~~~-------------lIlDE-~~~lD~~~~~~l~~li~~~~~--~~Vivi~h~~l~~~l~~~~~~~~~v~ 292 (441)
.||||+.||+.+ .|||| |.+|-....+.|++++.++-. ++|||+.|+ |+ +.+.||.
T Consensus 822 TLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHN-----Ld-VIk~AD~-- 893 (935)
T COG0178 822 TLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHN-----LD-VIKTADW-- 893 (935)
T ss_pred cccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecc-----cc-eEeecCE--
Confidence 489999988765 99999 999988888888888888853 599999999 64 3466776
Q ss_pred EEEecC-----CCCeeeCChHH
Q 013511 293 VVKLQK-----SGGVVSRNSKV 309 (441)
Q Consensus 293 vl~l~~-----~g~vv~~~~~~ 309 (441)
|+-+.. .|.++..+.++
T Consensus 894 IIDLGPeGG~~GG~iva~GTPe 915 (935)
T COG0178 894 IIDLGPEGGDGGGEIVASGTPE 915 (935)
T ss_pred EEEcCCCCCCCCceEEEecCHH
Confidence 444433 34567776644
No 435
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.17 E-value=2.2e-05 Score=74.39 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=38.1
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
+.+|.+++|.|++|||||||+..++--+++.|.+++|++.+-
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 588999999999999999999999877778999999999863
No 436
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.13 E-value=4.4e-06 Score=75.91 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=36.2
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
.++|.||+|+|||||+.-++..+++.|.+++|+..+-+..++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 368999999999999999888888999999999987665443
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.09 E-value=5e-06 Score=82.31 Aligned_cols=43 Identities=23% Similarity=0.119 Sum_probs=39.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.+|.+++++|||||||||+++.|++++...|++|+++|.|+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 5689999999999999999999999998899999999999843
No 438
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=8.2e-05 Score=80.86 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=39.3
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHH-HcC-CccEEEeccCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAA-KLG-WKPTFVDLDIG 168 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g-~~~~~vDldp~ 168 (441)
.++.+.+|.+++++||||+||||++..|+++.. +.| +++.+++.|..
T Consensus 178 ~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 178 EDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred CCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 566667899999999999999999999999874 555 58889888853
No 439
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.01 E-value=9.2e-06 Score=80.03 Aligned_cols=48 Identities=25% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
++....++.+++|+|++|||||||++.|+..+.+.|+++.+++.||.+
T Consensus 27 ~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 27 IMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 777788999999999999999999999999999999999999999875
No 440
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.97 E-value=3e-05 Score=66.24 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAA 154 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~ 154 (441)
..+..+.|.||+|+|||||++.+++...
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3577899999999999999999999843
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.97 E-value=8e-05 Score=76.22 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=37.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
..+++++|++||||||++.-|+.++.+.|++|++|+.|+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 35899999999999999999999988899999999999865
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=1.4e-05 Score=79.89 Aligned_cols=47 Identities=23% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
++.+.+|++++++||+||||||++.-|+..+.+.|+++.+|+.|+..
T Consensus 200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 45568899999999999999999999999988999999999999863
No 443
>PRK04296 thymidine kinase; Provisional
Probab=97.91 E-value=0.00012 Score=67.09 Aligned_cols=35 Identities=23% Similarity=0.095 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
|.++++.||.|+||||++.-++..+...|.+++++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 67899999999999999988888888889999987
No 444
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.89 E-value=2.8e-05 Score=74.31 Aligned_cols=29 Identities=28% Similarity=0.496 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+.+.+|++++|+||+|+|||||++.|++.
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35789999999999999999999999998
No 445
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=3.2e-06 Score=84.40 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=30.9
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHH
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAK 155 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~ 155 (441)
.++.|-.|.+++++||||-|||||+|.|++.++.
T Consensus 283 A~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala 316 (807)
T KOG0066|consen 283 ASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA 316 (807)
T ss_pred cceEEEecceecccCCCCCchHHHHHHHHhhhcc
Confidence 5788889999999999999999999999998653
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.89 E-value=1.9e-05 Score=81.95 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=38.7
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHH-HcC-CccEEEeccC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAA-KLG-WKPTFVDLDI 167 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g-~~~~~vDldp 167 (441)
.++.+.+|.+++++||||+||||++..|+++.. +.| .++.+|+.|+
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 455567899999999999999999999999874 555 4788888886
No 447
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.89 E-value=6.8e-05 Score=82.85 Aligned_cols=120 Identities=13% Similarity=0.203 Sum_probs=62.5
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccceEEEec-ccC
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPLVYFFG-HAT 207 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~t 207 (441)
+.+++|.|||++||||++|+++-.++ -...|. .+|.. .. ..+++......-++ ..+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~-----------maq~G~-~vpa~-------~~----~~i~~~~~i~~~ig~~~s 383 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAAL-----------MAKSGL-PIPAN-------EP----SEIPVFKEIFADIGDEQS 383 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHH-----------HHHhCC-CcccC-------CC----ccccccceEEEecCCccc
Confidence 45789999999999999999976532 111121 11111 00 00111111111112 123
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCchhHHHH-HHHHHHcC--CCEEEEeCCchh
Q 013511 208 PSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGVGYELL-LHAIDTFK--ANVVLVLGQEKL 277 (441)
Q Consensus 208 v~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~~~~~l-~~li~~~~--~~~Vivi~h~~l 277 (441)
+..++.-+...+.++..-. ..+ ...+++|+|| ++++|+.....+ ..+++.+. ..+++++||+..
T Consensus 384 i~~~lStfS~~m~~~~~Il-~~~-----~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRIL-EKA-----DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred hhhchhHHHHHHHHHHHHH-HhC-----CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 3344444443333332221 222 1346899999 889998755444 44555543 238888899843
No 448
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.87 E-value=1.2e-05 Score=76.53 Aligned_cols=39 Identities=33% Similarity=0.566 Sum_probs=29.9
Q ss_pred EECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 134 VVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 134 IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
|+||.||||||+++.+..+....|+++.+||+||..-.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~ 39 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENL 39 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhccc
Confidence 689999999999999999999999999999999986554
No 449
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.86 E-value=1.6e-05 Score=81.89 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 124 SDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 124 l~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
+.+.+|++++|+|+||+|||||+++|+++ .+++.+.+..-|
T Consensus 158 ~~i~~Gq~~~I~G~sG~GKStLl~~I~~~------------~~~~~~vi~~iG 198 (440)
T TIGR01026 158 LTVGKGQRIGIFAGSGVGKSTLLGMIARN------------TEADVNVIALIG 198 (440)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCEEEEEEEe
Confidence 88999999999999999999999999998 777766655444
No 450
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.81 E-value=2.7e-05 Score=68.54 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=36.0
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++++|++||||||+++.|+..+.+.|+++.++|.||++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 378999999999999999999999999999999999854
No 451
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.79 E-value=2.4e-05 Score=57.82 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.|+.++|.|+||||||||+..+.=.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998876
No 452
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.79 E-value=6.2e-05 Score=75.30 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=76.4
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC--Cceeeeeecc---------CcCCCCCCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI--PGCIAATPIE---------LPIDPVEGIP 194 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~--~G~~~~~~~~---------~~~~~~~~~~ 194 (441)
-.+|++.+++|.||-||||-+++|+|. +.|.-|...- +++.+....+ +.+.......
T Consensus 97 prpg~vlglvgtngigkstAlkilagk------------~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~ 164 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGK------------QKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAI 164 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCC------------CCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCc
Confidence 368999999999999999999999999 8887765432 1211111100 0000000000
Q ss_pred cccceEEEecc---cCccCCHHH---------HHH--HHHHHHHHHHHHhccCccceeee----------EEEeC-CCCC
Q 013511 195 LEMPLVYFFGH---ATPSNNVEL---------YKV--LVKELAQMLERQFNGNAESRAAG----------MVINT-MGWI 249 (441)
Q Consensus 195 ~~~~~~~~~g~---~tv~en~~~---------~~~--~~~~l~~~~~~~ls~g~~~r~~~----------lIlDE-~~~l 249 (441)
...+....++. .++.+.+.. +.. .+..+.++-...+|+|+.||.++ .++|| .+.|
T Consensus 165 ~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 165 IKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 00000000000 001111000 000 01223344456689998877654 89999 7889
Q ss_pred CchhHHHHHHHHHHc-CCC-EEEEeCCc
Q 013511 250 EGVGYELLLHAIDTF-KAN-VVLVLGQE 275 (441)
Q Consensus 250 D~~~~~~l~~li~~~-~~~-~Vivi~h~ 275 (441)
|...+......|+.+ +++ .|||+.||
T Consensus 245 DVKQRLkaA~~IRsl~~p~~YiIVVEHD 272 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLINPDRYIIVVEHD 272 (592)
T ss_pred hHHHhhhHHHHHHHhhCCCCeEEEEEee
Confidence 987776667777776 455 88888998
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.78 E-value=3.4e-05 Score=75.30 Aligned_cols=42 Identities=31% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHc-C-CccEEEeccCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKL-G-WKPTFVDLDIG 168 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~-g-~~~~~vDldp~ 168 (441)
.+|.+++++||+|+||||++.-|+.++... | +++.+|+.|+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 467899999999999999999999988765 5 89999999974
No 454
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.77 E-value=3.6e-05 Score=69.45 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
++|++++|+|++||||||+++.|++.+...|+++.++|.|
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 5789999999999999999999999976667777777665
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.77 E-value=3.2e-05 Score=71.55 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=24.9
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.+|++++|+||+|||||||++.|++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999999998
No 456
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.75 E-value=1.3e-05 Score=83.79 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceee
Q 013511 103 VNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIA 179 (441)
Q Consensus 103 ~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~ 179 (441)
.|++..+++. .++++ +++.+..|+.++++||||+|||||++.|.|+ +.|.+|+..+.++.+
T Consensus 188 ~d~~~v~Gq~--~~~~a--l~laa~~G~~llliG~~GsGKTtLak~L~gl------------lpp~~g~e~le~~~i 248 (506)
T PRK09862 188 HDLSDVIGQE--QGKRG--LEITAAGGHNLLLIGPPGTGKTMLASRINGL------------LPDLSNEEALESAAI 248 (506)
T ss_pred cCeEEEECcH--HHHhh--hheeccCCcEEEEECCCCCcHHHHHHHHhcc------------CCCCCCcEEEecchh
Confidence 3555555544 24443 7888899999999999999999999999999 999999988877654
No 457
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.74 E-value=0.0002 Score=67.94 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=64.2
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCcccce-E
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEMPL-V 200 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~~~-~ 200 (441)
+.+.-....++.|.|||.+||||++|.++-..+- ..-|. .+|..... ++..... .
T Consensus 36 i~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~il-----------aq~G~-~VPA~~~~------------i~~~d~I~t 91 (235)
T PF00488_consen 36 IELSNNKSRIIIITGPNMSGKSTFLKQIGLIVIL-----------AQIGC-FVPAESAE------------IPIFDRIFT 91 (235)
T ss_dssp EEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHH-----------HTTT---BSSSEEE------------EE--SEEEE
T ss_pred eecCCCceeEEEEeCCCccchhhHHHHHHHHhhh-----------hhcCc-eeeecccc------------cccccEEEe
Confidence 4443334469999999999999999998766321 11122 12221110 0000000 1
Q ss_pred EEecccCccCCHHHHHHHHHHHHHHHHHHhccCccceeeeEEEeC-CCCCCch-hHHHHHHHHHHcC---CCEEEEeCCc
Q 013511 201 YFFGHATPSNNVELYKVLVKELAQMLERQFNGNAESRAAGMVINT-MGWIEGV-GYELLLHAIDTFK---ANVVLVLGQE 275 (441)
Q Consensus 201 ~~~g~~tv~en~~~~~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~~~lD~~-~~~~l~~li~~~~---~~~Vivi~h~ 275 (441)
.+-..-++.++...+...+.++..-+.. .. .-+++|+|| ..+-++. +......+++.+. ...+++.||.
T Consensus 92 ~~~~~d~~~~~~S~F~~E~~~~~~il~~-~~-----~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~ 165 (235)
T PF00488_consen 92 RIGDDDSIESGLSTFMAEMKRLSSILRN-AT-----EKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHF 165 (235)
T ss_dssp EES---SSTTSSSHHHHHHHHHHHHHHH--------TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-
T ss_pred ecccccccccccccHHHhHHHHHhhhhh-cc-----cceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEecc
Confidence 1112234445555555555555443322 11 236899999 5555553 3333344444443 2267778888
Q ss_pred hhhHHHH
Q 013511 276 KLFSMLR 282 (441)
Q Consensus 276 ~l~~~l~ 282 (441)
..+..+.
T Consensus 166 ~~l~~~~ 172 (235)
T PF00488_consen 166 HELAELL 172 (235)
T ss_dssp GGGGGHH
T ss_pred chhHHHh
Confidence 5544443
No 458
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.73 E-value=4.6e-05 Score=76.61 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=38.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.+.+++|+||+||||||++..|+..+.+.|+++.+++.|+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 346899999999999999999999988899999999999764
No 459
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.73 E-value=4.9e-05 Score=73.73 Aligned_cols=42 Identities=21% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
..++.+++++||+|+||||++.-|+.++.+.|++|+++|.|+
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 355679999999999999999999999889999999999997
No 460
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.73 E-value=3e-05 Score=70.26 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+|++++|+|+||||||||+++|+++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999999998
No 461
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.72 E-value=3.6e-05 Score=72.37 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEECCCCCChhHHHHHHHHH
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+++|.|+||||||||++.|+++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 4899999999999999999998
No 462
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.72 E-value=3.1e-05 Score=71.94 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++|.+++|+||||||||||++.|+++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999999998
No 463
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=97.71 E-value=0.0022 Score=59.53 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=39.2
Q ss_pred CCCCEEEEEC-CCCCChhHHHHHHHHHHHH-cCCccEEEeccCCCCcc
Q 013511 127 SQGPRVIVVG-PTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 127 ~~G~~v~IvG-pnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp~~G~i 172 (441)
..+.+++|+| ..|+||||+.-.|+-.+.+ .|+++++||+|+..+.+
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~ 80 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSL 80 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhh
Confidence 4567899997 5599999999999987775 69999999999988765
No 464
>PRK09183 transposase/IS protein; Provisional
Probab=97.70 E-value=5e-05 Score=73.15 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=36.9
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEe
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVD 164 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vD 164 (441)
+++ +.+|+.++|+||+|+|||+|+..|++.+...|+++.|++
T Consensus 96 ~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 96 LSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 566 789999999999999999999999998877787777765
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.70 E-value=7.8e-05 Score=78.33 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHc-CCccEEEeccCCCCcccCCceeeeeeccCcCCCCCCCCccc----ceE
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL-GWKPTFVDLDIGQGAITIPGCIAATPIELPIDPVEGIPLEM----PLV 200 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~-g~~~~~vDldp~~G~i~~~G~~~~~~~~~~~~~~~~~~~~~----~~~ 200 (441)
+.+|..++|.|++|||||||+..++--.++. |.+++||..+-...++.-+- . . .++.+.. ...
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~-------~-~----~G~~~~~~~~~g~l 85 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNA-------R-S----FGWDLQKLVDEGKL 85 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHH-------H-H----cCCCHHHHhhcCce
Confidence 5789999999999999999999876554555 88999988763332321000 0 0 0111100 000
Q ss_pred EEecccCccCCHHHH--HHHHHHHHHHHHHHhccCccceeeeEEEeC-C---CCCCc--hhHHHHHHHHHHcCC--CEEE
Q 013511 201 YFFGHATPSNNVELY--KVLVKELAQMLERQFNGNAESRAAGMVINT-M---GWIEG--VGYELLLHAIDTFKA--NVVL 270 (441)
Q Consensus 201 ~~~g~~tv~en~~~~--~~~~~~l~~~~~~~ls~g~~~r~~~lIlDE-~---~~lD~--~~~~~l~~li~~~~~--~~Vi 270 (441)
.+. +..+....... ...+..+.+.....++.++++| ++||- . ...+. ..++.+.++++.++. .+++
T Consensus 86 ~~~-~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qR---VvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvL 161 (484)
T TIGR02655 86 FIL-DASPDPEGQDVVGGFDLSALIERINYAIRKYKAKR---VSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTV 161 (484)
T ss_pred EEE-ecCchhccccccccCCHHHHHHHHHHHHHHhCCcE---EEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEE
Confidence 111 11111000000 0013445667777888888875 55673 1 22232 245667777777653 3778
Q ss_pred EeCCchh-hHHHH---HHhcCCCCeEEEE
Q 013511 271 VLGQEKL-FSMLR---DVLKNRPNVDVVK 295 (441)
Q Consensus 271 vi~h~~l-~~~l~---~~~~~~~~v~vl~ 295 (441)
+++|+.. ..... ....++|.|.+++
T Consensus 162 Ltsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 162 MTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred EEecCcccccccccCCceeEeeeeEEEEE
Confidence 7888621 11111 0123678877774
No 466
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.70 E-value=5.5e-05 Score=67.10 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=38.0
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
+++|+|++|||||||++.|+..+...|+++.++.-+.....+..+|.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~~~d~~~~D 48 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNGKD 48 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccccCCCcccc
Confidence 478999999999999999999988889999999876543333333543
No 467
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.69 E-value=3.5e-05 Score=72.85 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGA 171 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~ 171 (441)
.+..+++|.||||||||||++.|++. +.+..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~------------l~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL------------LQQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH------------hhhccCC
Confidence 45679999999999999999999999 6666666
No 468
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00012 Score=73.89 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=39.4
Q ss_pred CCCCCCCCCEEEEECCCCCChhHHHHHHHHHHH-HcC-CccEEEeccCC
Q 013511 122 KDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAA-KLG-WKPTFVDLDIG 168 (441)
Q Consensus 122 vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~-~~g-~~~~~vDldp~ 168 (441)
.++.+.+|.+++++||||+||||++..|++.+. +.| .++.++..|..
T Consensus 130 ~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 130 EDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 556678999999999999999999999999865 456 58888887764
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.66 E-value=6.4e-05 Score=74.69 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQG 170 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G 170 (441)
..-+++|+|++|||||||+..|...+...|+++.++..||.+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 3458999999999999999999999988999999999999753
No 470
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.66 E-value=0.00011 Score=68.51 Aligned_cols=28 Identities=4% Similarity=-0.142 Sum_probs=24.0
Q ss_pred eeeEEEeC-C-----CCCCchhHHHHHHHHHHcC
Q 013511 238 AAGMVINT-M-----GWIEGVGYELLLHAIDTFK 265 (441)
Q Consensus 238 ~~~lIlDE-~-----~~lD~~~~~~l~~li~~~~ 265 (441)
..++++|| + +++|+...+.+.+++++++
T Consensus 171 p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 171 PNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred ccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34689999 8 8999999999999998874
No 471
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.66 E-value=3.2e-05 Score=75.42 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHH
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
.-.+++|.||||||||||+++|.++
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999998
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.66 E-value=4.7e-05 Score=70.13 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=25.7
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
+++|.||+|||||||+++|.++. .+.++.++..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D 34 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD 34 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec
Confidence 47999999999999999999983 23344444443
No 473
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.64 E-value=6.8e-05 Score=69.71 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEecc
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLD 166 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDld 166 (441)
.++.+++|.|++|||||||++.|++.. .+..+.+++.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D 41 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQD 41 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCC
Confidence 567899999999999999999999983 23344444444
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.63 E-value=3.9e-05 Score=70.07 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=22.9
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|++++|+||||||||||+|+|++.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 689999999999999999999987
No 475
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.63 E-value=4.7e-05 Score=64.37 Aligned_cols=25 Identities=44% Similarity=0.708 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCChhHHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
+..++|+||+|+||||+++.|++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 6789999999999999999999983
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.63 E-value=0.00011 Score=75.18 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=49.5
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCcee
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGCI 178 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~~ 178 (441)
.++-..++..|+.. ..+++ ..+.+.+|++++|+|++|+|||||+++|++. ..++.|.|.+-|..
T Consensus 130 ~~~r~~i~~~l~TG-iraID---~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~------------~~~~~gvI~~iGer 193 (432)
T PRK06793 130 AFEREEITDVFETG-IKSID---SMLTIGIGQKIGIFAGSGVGKSTLLGMIAKN------------AKADINVISLVGER 193 (432)
T ss_pred chheechhhccCCC-CEEEe---ccceecCCcEEEEECCCCCChHHHHHHHhcc------------CCCCeEEEEeCCCC
Confidence 35555666666542 23444 3588999999999999999999999999998 88888888776653
No 477
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=0.00025 Score=65.35 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=31.5
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIG 168 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~ 168 (441)
+++++||+|+||||.+-=|+.++...+++|.++-.|..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 68999999999999888888887777999999988854
No 478
>PRK06893 DNA replication initiation factor; Validated
Probab=97.61 E-value=0.00034 Score=66.12 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=32.9
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
.++.+.|.||+|+|||+|++.+++.+.+.+.++.|++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 45678999999999999999999998887777777665
No 479
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.61 E-value=8e-05 Score=68.72 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=25.2
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHH
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWA 153 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a 153 (441)
.+|.+++|+|++|||||||++.|.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999984
No 480
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.61 E-value=1.6e-05 Score=81.60 Aligned_cols=62 Identities=21% Similarity=0.178 Sum_probs=49.3
Q ss_pred chhHHHHHHHHhhhhhhhccCCCCCCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCc
Q 013511 99 MVSYVNVNAVLEGRRNHAKASPSKDSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPG 176 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~~~~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G 176 (441)
.++..++++.|... ..+++. + +.+.+|++++|+||+|||||||+++|+++ .+|+.|.+.+-|
T Consensus 139 ~~~r~~v~~~l~TG-i~aID~--L-~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l------------~~pd~gvv~liG 200 (450)
T PRK06002 139 AMTRARVETGLRTG-VRVIDI--F-TPLCAGQRIGIFAGSGVGKSTLLAMLARA------------DAFDTVVIALVG 200 (450)
T ss_pred CeEeecceEEcCCC-cEEeee--e-ceecCCcEEEEECCCCCCHHHHHHHHhCC------------CCCCeeeeeecc
Confidence 56677777777543 244543 4 37999999999999999999999999998 888888887754
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.60 E-value=0.00011 Score=66.09 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccC
Q 013511 128 QGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDI 167 (441)
Q Consensus 128 ~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp 167 (441)
.-++++|+|++|||||||++.|...+-..|+++..|=.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 4468999999999999999999999666677766664433
No 482
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=9e-05 Score=76.34 Aligned_cols=44 Identities=34% Similarity=0.310 Sum_probs=38.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHH--HcCCccEEEeccCCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAA--KLGWKPTFVDLDIGQ 169 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~--~~g~~~~~vDldp~~ 169 (441)
+.+|.+++++||+|+||||++..|+..+. +.|+++.+||.|+..
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 56688999999999999999999988776 567999999999853
No 483
>PRK13768 GTPase; Provisional
Probab=97.57 E-value=0.00011 Score=70.58 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=38.4
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcc
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAI 172 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i 172 (441)
++.|.|+.||||||++..++..+.+.|+++++||+||+...+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 688999999999999999999988999999999999976554
No 484
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=6.6e-05 Score=72.55 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=38.6
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
.+|++++++|++|+||||+++.|++.+.+.+.++.+++.|+..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3679999999999999999999999988788999999998654
No 485
>PRK06526 transposase; Provisional
Probab=97.56 E-value=0.00046 Score=66.23 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=32.6
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEE
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTF 162 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~ 162 (441)
+..++-+.++||+|+|||+|+..|+..+.+.|+++.|
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4567889999999999999999999998888877766
No 486
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.55 E-value=0.00013 Score=65.84 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEE
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFV 163 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~v 163 (441)
..+|..+.++|++||||||+++.|++.+...+....++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 46789999999999999999999999854333333443
No 487
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.53 E-value=7.1e-05 Score=68.20 Aligned_cols=45 Identities=29% Similarity=0.463 Sum_probs=39.7
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIP 175 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~ 175 (441)
-.+|+||.||||||+|+.|.......|++.-+|++||.+-.+.++
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~ 49 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYP 49 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCc
Confidence 467999999999999999999999999999999999986554433
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.52 E-value=6.7e-05 Score=67.86 Aligned_cols=24 Identities=42% Similarity=0.675 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
|.+++|+||+|||||||++.|++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 679999999999999999999996
No 489
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00015 Score=75.69 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=37.5
Q ss_pred CCCCCEEEEECCCCCChhHHHHHHHHHHHHc--CCccEEEeccCC
Q 013511 126 ASQGPRVIVVGPTDSGKSTLSRMLLSWAAKL--GWKPTFVDLDIG 168 (441)
Q Consensus 126 i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~--g~~~~~vDldp~ 168 (441)
+.+|++++|+||+|+||||++..|+..+.+. ++++.+++.|+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 5789999999999999999999999877665 478999999874
No 490
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.50 E-value=0.0011 Score=63.70 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCChhHHHHHHHHH
Q 013511 129 GPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 129 G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
+..++|+||+|+|||||++.+++.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 348999999999999999999988
No 491
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.49 E-value=0.0016 Score=72.75 Aligned_cols=38 Identities=29% Similarity=0.343 Sum_probs=31.5
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHH-cCCccEEEeccC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAK-LGWKPTFVDLDI 167 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~-~g~~~~~vDldp 167 (441)
.-++|+|++|||||||++.|++...+ .+.+++++|.+-
T Consensus 457 g~~~i~G~tGsGKS~l~~~l~~~~~~~~~~~v~~~D~~~ 495 (818)
T PRK13830 457 GHTLIFGPTGSGKSTLLALIAAQFRRYAGAQIFAFDKGR 495 (818)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccccCCCEEEEECCCC
Confidence 37999999999999999999988777 466777766654
No 492
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.49 E-value=0.00032 Score=66.05 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 127 SQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 127 ~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
..++.+.|.||.|+|||+|++.+++.+.+.++.+.|+|.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 456789999999999999999999997776766666654
No 493
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.49 E-value=4.8e-05 Score=75.24 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 123 DSDASQGPRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 123 sl~i~~G~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
++.+..|..++|+||+|||||||+++|+++ +++..+.+.+
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~------------~~~~~~iv~i 177 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDE------------IPKDERIITI 177 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHcc------------CCccccEEEE
Confidence 345678999999999999999999999999 7777765554
No 494
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.48 E-value=0.00018 Score=64.76 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=35.8
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCC
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQ 169 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~ 169 (441)
+++++|+.|+||||+++.++..+.+.|++++++|.|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 678999999999999999999888889999999999854
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.47 E-value=0.00018 Score=63.96 Aligned_cols=48 Identities=27% Similarity=0.299 Sum_probs=39.1
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccCCce
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITIPGC 177 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~~G~ 177 (441)
.+++|+|++|||||||++.|...+...|+++.++..+.....+-.+|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g~ 49 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPGK 49 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCccc
Confidence 378999999999999999999998888999988887766544434454
No 496
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.46 E-value=0.0011 Score=74.34 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 121 SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 121 ~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
++.+. ..+.+++|.|||.+||||++|.++-.
T Consensus 600 d~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~ 630 (854)
T PRK05399 600 DCDLD-EERRLLLITGPNMAGKSTYMRQVALI 630 (854)
T ss_pred ceeeC-CCCcEEEEECCCCCCcHHHHHHHHHH
Confidence 34444 45678999999999999999998765
No 497
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.46 E-value=0.00018 Score=54.60 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=27.0
Q ss_pred EEEEECCCCCChhHHHHHHHHHHHHcCCccEEEec
Q 013511 131 RVIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDL 165 (441)
Q Consensus 131 ~v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDl 165 (441)
+++|+|++||||||+++.|.... .++++.++|.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 37899999999999999999985 4566666654
No 498
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.43 E-value=3.5e-05 Score=77.71 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=43.8
Q ss_pred chhHHHHHHHHhhhhhhhcc--CC-------CCCCCCCCCCEEEEECCCCCChhHHHHHHHHH
Q 013511 99 MVSYVNVNAVLEGRRNHAKA--SP-------SKDSDASQGPRVIVVGPTDSGKSTLSRMLLSW 152 (441)
Q Consensus 99 ml~~~nl~~~~~~~~~~~l~--~~-------~vsl~i~~G~~v~IvGpnGsGKSTLlr~L~g~ 152 (441)
-+.++|+++.|.+.+ .+++ .+ |+.+.+.+|++++|+||.|+|||||++.|++.
T Consensus 130 ri~Fe~LTf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 130 RVLFENLTPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred CeEEEEeeecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 477889999997654 4553 01 37888999999999999999999999999997
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.42 E-value=0.001 Score=68.42 Aligned_cols=40 Identities=30% Similarity=0.356 Sum_probs=35.6
Q ss_pred CEEEEECCCCCChhHHHHHHHHHHH-HcCCccEEEeccCCC
Q 013511 130 PRVIVVGPTDSGKSTLSRMLLSWAA-KLGWKPTFVDLDIGQ 169 (441)
Q Consensus 130 ~~v~IvGpnGsGKSTLlr~L~g~a~-~~g~~~~~vDldp~~ 169 (441)
.+++++|++||||||++.-|+.++. +.|++|++||.|+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4899999999999999999998865 579999999999854
No 500
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.41 E-value=0.00017 Score=66.89 Aligned_cols=43 Identities=28% Similarity=0.475 Sum_probs=38.1
Q ss_pred EEEECCCCCChhHHHHHHHHHHHHcCCccEEEeccCCCCcccC
Q 013511 132 VIVVGPTDSGKSTLSRMLLSWAAKLGWKPTFVDLDIGQGAITI 174 (441)
Q Consensus 132 v~IvGpnGsGKSTLlr~L~g~a~~~g~~~~~vDldp~~G~i~~ 174 (441)
.+|+||.||||||.|.-+..+.-..|+++..|++||..-.+.+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y 47 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPY 47 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCC
Confidence 3689999999999999999998889999999999998765543
Done!